Query 005499
Match_columns 693
No_of_seqs 908 out of 4384
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 00:25:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005499.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005499hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4162 Predicted calmodulin-b 100.0 1.8E-54 3.9E-59 434.1 55.4 673 17-693 64-796 (799)
2 KOG4626 O-linked N-acetylgluco 100.0 3.1E-45 6.7E-50 357.2 33.2 434 180-687 54-492 (966)
3 TIGR02917 PEP_TPR_lipo putativ 100.0 1.6E-42 3.4E-47 403.4 57.4 604 14-689 252-875 (899)
4 KOG4626 O-linked N-acetylgluco 100.0 6.6E-44 1.4E-48 347.9 38.0 469 52-679 45-518 (966)
5 TIGR02917 PEP_TPR_lipo putativ 100.0 1.8E-42 3.9E-47 402.9 55.2 576 14-683 150-735 (899)
6 PRK11447 cellulose synthase su 100.0 1.8E-39 4E-44 377.1 53.2 579 14-684 53-704 (1157)
7 PRK11447 cellulose synthase su 100.0 2.2E-36 4.7E-41 351.5 56.2 586 14-686 87-749 (1157)
8 KOG2002 TPR-containing nuclear 100.0 6.2E-35 1.4E-39 300.6 42.8 607 21-690 39-755 (1018)
9 PRK09782 bacteriophage N4 rece 100.0 2.1E-32 4.5E-37 303.1 58.5 576 10-689 26-715 (987)
10 PRK09782 bacteriophage N4 rece 100.0 3.9E-33 8.5E-38 308.9 51.2 592 12-685 67-745 (987)
11 KOG2002 TPR-containing nuclear 100.0 6.8E-33 1.5E-37 285.7 40.2 567 16-665 157-764 (1018)
12 TIGR00990 3a0801s09 mitochondr 100.0 3.5E-32 7.6E-37 297.6 48.4 402 175-684 128-575 (615)
13 TIGR00990 3a0801s09 mitochondr 100.0 3.4E-30 7.3E-35 282.0 50.1 437 121-652 126-577 (615)
14 PRK15174 Vi polysaccharide exp 100.0 2E-29 4.2E-34 274.4 40.6 330 278-650 48-385 (656)
15 PRK15174 Vi polysaccharide exp 100.0 5E-29 1.1E-33 271.3 41.6 338 308-689 44-390 (656)
16 PLN03077 Protein ECB2; Provisi 100.0 8.1E-28 1.7E-32 273.8 49.7 543 27-680 125-720 (857)
17 PRK10049 pgaA outer membrane p 100.0 4.8E-28 1E-32 269.5 41.5 396 245-687 27-463 (765)
18 PLN03077 Protein ECB2; Provisi 100.0 1.6E-26 3.4E-31 263.3 47.0 548 23-685 51-623 (857)
19 PRK10049 pgaA outer membrane p 100.0 8.8E-26 1.9E-30 251.4 46.1 367 269-654 80-464 (765)
20 KOG0547 Translocase of outer m 100.0 1.2E-26 2.6E-31 222.1 30.7 382 274-683 117-569 (606)
21 PLN03081 pentatricopeptide (PP 100.0 5.5E-25 1.2E-29 244.6 42.8 463 26-645 90-556 (697)
22 KOG1126 DNA-binding cell divis 99.9 5.4E-26 1.2E-30 227.0 24.9 289 355-685 332-625 (638)
23 PLN03218 maturation of RBCL 1; 99.9 3.3E-22 7.1E-27 223.9 54.2 379 243-680 517-909 (1060)
24 PRK14574 hmsH outer membrane p 99.9 1.2E-22 2.6E-27 221.3 48.7 475 51-654 30-521 (822)
25 KOG1126 DNA-binding cell divis 99.9 2.5E-25 5.4E-30 222.3 24.5 302 273-616 318-626 (638)
26 PLN03218 maturation of RBCL 1; 99.9 6.8E-22 1.5E-26 221.3 53.7 503 41-676 355-872 (1060)
27 PRK14574 hmsH outer membrane p 99.9 2.7E-22 5.8E-27 218.5 48.4 377 274-687 104-520 (822)
28 PLN03081 pentatricopeptide (PP 99.9 5.6E-23 1.2E-27 228.6 44.1 457 125-681 90-558 (697)
29 KOG0547 Translocase of outer m 99.9 1.4E-23 3.1E-28 201.1 32.8 372 238-651 120-571 (606)
30 KOG1155 Anaphase-promoting com 99.9 8.7E-23 1.9E-27 194.7 37.5 298 278-648 233-538 (559)
31 KOG1155 Anaphase-promoting com 99.9 1.4E-22 3.1E-27 193.3 38.6 362 269-681 161-537 (559)
32 KOG2076 RNA polymerase III tra 99.9 4.8E-22 1E-26 204.9 44.0 615 23-685 139-854 (895)
33 KOG1173 Anaphase-promoting com 99.9 1E-22 2.2E-27 199.2 36.1 502 26-626 19-534 (611)
34 KOG2003 TPR repeat-containing 99.9 4.9E-23 1.1E-27 195.3 32.3 285 308-632 421-711 (840)
35 KOG2003 TPR repeat-containing 99.9 6.7E-23 1.5E-27 194.4 31.8 485 131-685 158-694 (840)
36 KOG1173 Anaphase-promoting com 99.9 8.3E-23 1.8E-27 199.9 31.8 411 232-686 48-524 (611)
37 PRK11788 tetratricopeptide rep 99.9 2.2E-22 4.8E-27 209.6 36.5 303 306-678 35-345 (389)
38 KOG0495 HAT repeat protein [RN 99.9 1.8E-20 3.9E-25 185.8 47.2 337 305-686 515-886 (913)
39 KOG0495 HAT repeat protein [RN 99.9 5.2E-20 1.1E-24 182.6 42.5 363 244-660 527-894 (913)
40 PRK11788 tetratricopeptide rep 99.9 2.6E-21 5.6E-26 201.6 34.3 275 382-687 35-318 (389)
41 KOG0548 Molecular co-chaperone 99.9 4.4E-21 9.5E-26 187.4 30.9 378 240-685 9-460 (539)
42 KOG0624 dsRNA-activated protei 99.9 1.1E-20 2.4E-25 173.4 29.4 343 269-657 35-381 (504)
43 KOG1174 Anaphase-promoting com 99.9 2.3E-19 4.9E-24 168.9 36.8 267 382-685 232-505 (564)
44 KOG4162 Predicted calmodulin-b 99.9 1.5E-18 3.2E-23 176.4 45.3 591 36-690 17-759 (799)
45 KOG0624 dsRNA-activated protei 99.9 1.8E-20 3.8E-25 172.1 27.6 328 302-687 34-377 (504)
46 KOG2076 RNA polymerase III tra 99.9 3E-19 6.6E-24 184.5 36.7 360 271-671 136-546 (895)
47 PF13429 TPR_15: Tetratricopep 99.9 8.9E-22 1.9E-26 193.9 13.4 259 386-680 12-277 (280)
48 KOG0548 Molecular co-chaperone 99.9 1.7E-18 3.7E-23 169.5 33.0 383 237-676 40-485 (539)
49 KOG1174 Anaphase-promoting com 99.9 6.2E-17 1.3E-21 152.7 40.5 323 269-665 192-519 (564)
50 TIGR00540 hemY_coli hemY prote 99.8 2.4E-18 5.2E-23 178.2 32.1 249 410-680 135-399 (409)
51 PRK12370 invasion protein regu 99.8 1.4E-18 3E-23 186.8 29.4 244 410-681 278-536 (553)
52 PRK12370 invasion protein regu 99.8 7.8E-19 1.7E-23 188.7 25.6 218 436-680 275-502 (553)
53 KOG1127 TPR repeat-containing 99.8 3.7E-17 8.1E-22 169.9 35.4 564 27-687 566-1182(1238)
54 PRK11189 lipoprotein NlpI; Pro 99.8 3.2E-18 6.9E-23 168.6 25.8 220 436-684 40-269 (296)
55 KOG1127 TPR repeat-containing 99.8 3.9E-17 8.5E-22 169.7 33.6 557 36-679 381-995 (1238)
56 PF13429 TPR_15: Tetratricopep 99.8 9.7E-20 2.1E-24 179.4 13.6 265 308-645 10-276 (280)
57 KOG1129 TPR repeat-containing 99.8 7.3E-18 1.6E-22 154.1 22.8 240 382-687 223-465 (478)
58 PRK10747 putative protoheme IX 99.8 1.1E-16 2.4E-21 164.8 34.2 257 389-681 125-391 (398)
59 COG3063 PilF Tfp pilus assembl 99.8 2.1E-17 4.6E-22 144.7 23.1 205 458-686 36-242 (250)
60 TIGR02521 type_IV_pilW type IV 99.8 1.9E-17 4.1E-22 159.4 25.2 201 458-682 32-234 (234)
61 KOG1125 TPR repeat-containing 99.8 5.1E-19 1.1E-23 174.5 14.2 232 434-683 297-530 (579)
62 TIGR00540 hemY_coli hemY prote 99.8 1.9E-16 4.1E-21 164.1 32.9 296 310-645 88-398 (409)
63 KOG1156 N-terminal acetyltrans 99.8 1E-15 2.2E-20 153.0 35.2 406 247-681 21-512 (700)
64 KOG1125 TPR repeat-containing 99.8 7.7E-18 1.7E-22 166.3 18.5 251 386-672 289-563 (579)
65 PLN02789 farnesyltranstransfer 99.8 1.3E-16 2.8E-21 156.1 27.0 218 410-664 37-268 (320)
66 COG3063 PilF Tfp pilus assembl 99.8 1.2E-16 2.6E-21 140.0 22.7 209 382-653 35-243 (250)
67 KOG1129 TPR repeat-containing 99.8 7.5E-18 1.6E-22 154.0 15.4 241 310-658 227-470 (478)
68 PRK10747 putative protoheme IX 99.8 1.7E-15 3.8E-20 156.0 33.6 209 410-646 170-390 (398)
69 KOG1915 Cell cycle control pro 99.8 2.5E-13 5.5E-18 130.8 45.0 380 268-685 137-541 (677)
70 PRK11189 lipoprotein NlpI; Pro 99.8 2.1E-16 4.5E-21 155.7 24.8 227 410-666 43-286 (296)
71 KOG1915 Cell cycle control pro 99.8 3.2E-13 6.8E-18 130.1 44.5 377 271-681 173-586 (677)
72 KOG1156 N-terminal acetyltrans 99.8 4.7E-15 1E-19 148.3 32.6 335 308-684 9-438 (700)
73 TIGR02521 type_IV_pilW type IV 99.7 4.8E-16 1E-20 149.5 25.2 192 434-648 43-234 (234)
74 KOG2376 Signal recognition par 99.7 1.1E-13 2.4E-18 137.1 38.9 125 24-203 13-139 (652)
75 KOG1840 Kinesin light chain [C 99.7 3.3E-15 7.1E-20 152.4 29.0 229 434-679 211-478 (508)
76 cd05804 StaR_like StaR_like; a 99.7 1.2E-14 2.6E-19 149.3 32.5 309 338-681 2-337 (355)
77 PLN02789 farnesyltranstransfer 99.7 5.5E-16 1.2E-20 151.7 20.8 207 458-686 38-256 (320)
78 KOG0550 Molecular chaperone (D 99.7 3E-16 6.4E-21 148.5 17.5 295 275-649 52-353 (486)
79 KOG0550 Molecular chaperone (D 99.7 2.5E-16 5.4E-21 149.0 16.4 267 383-683 50-353 (486)
80 COG2956 Predicted N-acetylgluc 99.7 1.3E-14 2.8E-19 133.2 26.7 265 387-683 40-314 (389)
81 COG2956 Predicted N-acetylgluc 99.7 7E-14 1.5E-18 128.5 31.0 265 280-615 43-316 (389)
82 KOG3785 Uncharacterized conser 99.7 2.5E-13 5.4E-18 126.1 33.1 461 30-684 29-494 (557)
83 KOG1840 Kinesin light chain [C 99.7 6.6E-14 1.4E-18 142.9 29.2 259 337-645 194-478 (508)
84 TIGR03302 OM_YfiO outer membra 99.6 1.9E-14 4.1E-19 138.1 19.4 187 458-682 34-234 (235)
85 KOG2376 Signal recognition par 99.6 3E-12 6.6E-17 127.1 33.7 409 240-685 19-492 (652)
86 PRK15359 type III secretion sy 99.6 2.9E-14 6.3E-19 123.6 14.8 113 550-664 27-139 (144)
87 PF12569 NARP1: NMDA receptor- 99.6 1.9E-11 4.2E-16 126.8 38.0 282 277-576 9-334 (517)
88 TIGR03302 OM_YfiO outer membra 99.6 1.6E-13 3.5E-18 131.6 20.9 192 423-648 29-234 (235)
89 PRK15359 type III secretion sy 99.6 1.7E-14 3.8E-19 125.0 12.1 116 567-687 13-128 (144)
90 KOG3785 Uncharacterized conser 99.6 3.7E-12 8E-17 118.4 27.5 373 243-676 32-453 (557)
91 cd05804 StaR_like StaR_like; a 99.6 3.2E-12 6.8E-17 131.4 30.3 311 268-610 2-336 (355)
92 PRK10370 formate-dependent nit 99.6 7E-14 1.5E-18 128.0 15.8 124 560-685 52-178 (198)
93 PRK04841 transcriptional regul 99.5 8.3E-11 1.8E-15 136.6 39.8 384 272-686 341-766 (903)
94 KOG3060 Uncharacterized conser 99.5 5.8E-12 1.3E-16 112.2 22.6 176 460-657 55-231 (289)
95 KOG4340 Uncharacterized conser 99.5 2.3E-11 4.9E-16 110.7 26.5 389 244-690 21-453 (459)
96 COG3071 HemY Uncharacterized e 99.5 1.7E-10 3.7E-15 110.0 33.3 222 434-680 165-390 (400)
97 KOG2047 mRNA splicing factor [ 99.5 1.4E-09 3E-14 109.4 40.1 481 129-679 109-614 (835)
98 PRK15179 Vi polysaccharide bio 99.5 2.3E-12 5E-17 138.7 21.3 138 544-683 83-220 (694)
99 KOG1130 Predicted G-alpha GTPa 99.5 2.8E-12 6.1E-17 121.5 19.1 316 243-632 27-372 (639)
100 KOG2047 mRNA splicing factor [ 99.5 1E-08 2.3E-13 103.2 44.5 554 40-680 85-687 (835)
101 COG5010 TadD Flp pilus assembl 99.5 5.2E-12 1.1E-16 114.0 19.1 173 441-639 52-224 (257)
102 TIGR02552 LcrH_SycD type III s 99.5 7.4E-13 1.6E-17 114.8 13.0 117 568-686 4-120 (135)
103 PRK10370 formate-dependent nit 99.5 5.8E-12 1.3E-16 115.3 19.4 153 464-651 23-178 (198)
104 KOG1128 Uncharacterized conser 99.5 8.7E-12 1.9E-16 127.1 21.9 209 434-682 410-618 (777)
105 KOG3060 Uncharacterized conser 99.5 1.2E-10 2.6E-15 104.0 26.1 172 434-628 64-238 (289)
106 KOG4340 Uncharacterized conser 99.4 1.3E-10 2.8E-15 105.9 25.7 299 34-482 21-335 (459)
107 PF12569 NARP1: NMDA receptor- 99.4 1.2E-10 2.6E-15 121.0 29.1 135 547-683 194-337 (517)
108 COG3071 HemY Uncharacterized e 99.4 1.3E-09 2.8E-14 104.1 33.1 292 309-646 87-390 (400)
109 COG5010 TadD Flp pilus assembl 99.4 1.1E-11 2.3E-16 112.0 17.9 176 476-676 52-227 (257)
110 KOG0553 TPR repeat-containing 99.4 3.6E-12 7.8E-17 117.2 14.5 120 547-668 81-200 (304)
111 PRK14720 transcript cleavage f 99.4 9.2E-11 2E-15 127.1 27.0 269 301-688 26-314 (906)
112 PRK04841 transcriptional regul 99.4 6.3E-10 1.4E-14 129.3 35.5 347 275-650 377-764 (903)
113 PRK15179 Vi polysaccharide bio 99.4 2.7E-11 5.9E-16 130.5 21.4 148 482-653 77-224 (694)
114 KOG1130 Predicted G-alpha GTPa 99.4 6.1E-12 1.3E-16 119.3 13.9 275 385-680 20-344 (639)
115 PRK15363 pathogenicity island 99.4 1.1E-11 2.4E-16 104.5 12.2 102 544-647 32-133 (157)
116 KOG0553 TPR repeat-containing 99.4 5.1E-12 1.1E-16 116.2 11.0 103 582-686 82-184 (304)
117 PRK14720 transcript cleavage f 99.3 3E-11 6.5E-16 130.8 18.0 152 452-610 27-178 (906)
118 KOG1128 Uncharacterized conser 99.3 6.2E-10 1.3E-14 113.9 24.9 220 269-525 395-619 (777)
119 TIGR02552 LcrH_SycD type III s 99.3 4.5E-11 9.7E-16 103.5 14.3 113 480-614 6-118 (135)
120 PRK15363 pathogenicity island 99.3 4.1E-11 9E-16 101.1 12.2 111 573-685 26-137 (157)
121 PF04733 Coatomer_E: Coatomer 99.3 3.9E-11 8.4E-16 116.3 11.5 222 434-686 47-271 (290)
122 PF04733 Coatomer_E: Coatomer 99.2 8.2E-10 1.8E-14 107.1 17.9 90 562-652 182-271 (290)
123 COG4783 Putative Zn-dependent 99.2 3.7E-09 8E-14 103.9 21.4 153 453-647 303-455 (484)
124 COG4783 Putative Zn-dependent 99.2 9.5E-10 2.1E-14 108.0 16.1 131 546-678 305-435 (484)
125 PLN03088 SGT1, suppressor of 99.2 5.4E-10 1.2E-14 112.7 14.9 113 550-664 5-117 (356)
126 COG4235 Cytochrome c biogenesi 99.1 1.7E-09 3.8E-14 100.7 15.7 123 563-685 138-261 (287)
127 PF13525 YfiO: Outer membrane 99.1 3.9E-09 8.4E-14 97.7 18.1 172 458-671 6-198 (203)
128 PLN03088 SGT1, suppressor of 99.1 5.3E-10 1.1E-14 112.8 12.4 103 584-688 5-107 (356)
129 PRK10866 outer membrane biogen 99.1 1.2E-08 2.7E-13 96.5 20.2 56 619-676 179-237 (243)
130 PF13525 YfiO: Outer membrane 99.1 8.3E-09 1.8E-13 95.5 18.3 156 434-632 17-195 (203)
131 PRK10866 outer membrane biogen 99.1 2.2E-08 4.7E-13 94.9 21.3 164 458-642 33-237 (243)
132 TIGR02795 tol_pal_ybgF tol-pal 99.1 1.3E-09 2.9E-14 92.0 11.8 103 548-652 3-111 (119)
133 TIGR02795 tol_pal_ybgF tol-pal 99.1 4.1E-09 8.9E-14 88.9 13.5 105 581-687 2-112 (119)
134 PRK02603 photosystem I assembl 99.0 1E-08 2.2E-13 92.5 16.0 121 491-650 33-153 (172)
135 KOG1070 rRNA processing protei 99.0 5.3E-08 1.1E-12 106.5 23.8 210 412-646 1443-1663(1710)
136 PRK02603 photosystem I assembl 99.0 4.4E-09 9.5E-14 94.9 13.2 119 544-684 32-153 (172)
137 cd00189 TPR Tetratricopeptide 99.0 3.2E-09 6.9E-14 85.6 10.8 98 583-682 2-99 (100)
138 CHL00033 ycf3 photosystem I as 99.0 5E-09 1.1E-13 94.2 12.6 120 563-684 15-153 (168)
139 PF09976 TPR_21: Tetratricopep 99.0 2E-08 4.2E-13 87.7 15.5 118 558-678 22-145 (145)
140 CHL00033 ycf3 photosystem I as 99.0 1.4E-08 2.9E-13 91.4 14.4 103 473-592 15-117 (168)
141 PF13414 TPR_11: TPR repeat; P 99.0 2.1E-09 4.7E-14 80.2 7.5 66 547-612 3-69 (69)
142 PF13414 TPR_11: TPR repeat; P 99.0 1.3E-09 2.7E-14 81.5 6.1 66 615-682 3-69 (69)
143 KOG3617 WD40 and TPR repeat-co 98.9 9.2E-07 2E-11 91.8 27.3 224 241-522 736-996 (1416)
144 PF09976 TPR_21: Tetratricopep 98.9 3.8E-08 8.3E-13 85.8 15.3 120 469-608 23-145 (145)
145 PRK10153 DNA-binding transcrip 98.9 2.4E-08 5.2E-13 104.9 16.4 133 551-686 343-488 (517)
146 cd00189 TPR Tetratricopeptide 98.9 8.9E-09 1.9E-13 82.9 10.3 99 549-649 2-100 (100)
147 PF13432 TPR_16: Tetratricopep 98.9 1.6E-09 3.4E-14 79.8 5.0 64 620-685 2-65 (65)
148 KOG3616 Selective LIM binding 98.9 3.7E-05 8E-10 79.3 37.4 313 306-685 648-1029(1636)
149 KOG3617 WD40 and TPR repeat-co 98.9 8.6E-05 1.9E-09 77.8 40.1 375 32-522 737-1174(1416)
150 KOG1070 rRNA processing protei 98.9 4.4E-07 9.6E-12 99.5 25.1 219 439-681 1441-1664(1710)
151 KOG0543 FKBP-type peptidyl-pro 98.9 2.4E-08 5.2E-13 96.5 13.3 134 548-683 209-358 (397)
152 KOG1914 mRNA cleavage and poly 98.9 8.7E-05 1.9E-09 74.3 37.8 403 265-682 13-503 (656)
153 PF13432 TPR_16: Tetratricopep 98.9 8.3E-09 1.8E-13 75.9 7.6 64 552-615 2-65 (65)
154 PRK11906 transcriptional regul 98.9 3.2E-08 7E-13 98.1 13.9 120 563-684 274-405 (458)
155 COG3898 Uncharacterized membra 98.9 1.1E-05 2.3E-10 77.3 29.8 286 279-610 91-392 (531)
156 KOG1941 Acetylcholine receptor 98.9 1.6E-06 3.5E-11 81.8 24.1 322 308-680 8-360 (518)
157 KOG1941 Acetylcholine receptor 98.9 4E-07 8.7E-12 85.8 20.1 315 279-645 13-359 (518)
158 PF12895 Apc3: Anaphase-promot 98.9 3.4E-09 7.5E-14 82.5 5.4 81 594-677 2-84 (84)
159 PF14938 SNAP: Soluble NSF att 98.9 1.9E-07 4.1E-12 91.5 18.7 207 459-682 37-268 (282)
160 PF12895 Apc3: Anaphase-promot 98.9 1.2E-08 2.5E-13 79.5 8.2 83 506-607 2-84 (84)
161 PRK15331 chaperone protein Sic 98.8 1.1E-08 2.3E-13 86.9 8.2 107 542-651 32-138 (165)
162 COG0457 NrfG FOG: TPR repeat [ 98.8 1.5E-06 3.3E-11 83.7 24.7 194 434-649 71-268 (291)
163 COG4235 Cytochrome c biogenesi 98.8 6E-08 1.3E-12 90.6 13.5 121 509-651 138-261 (287)
164 PF14938 SNAP: Soluble NSF att 98.8 1.6E-07 3.5E-12 92.0 17.0 174 496-686 38-231 (282)
165 PRK10803 tol-pal system protei 98.8 6.2E-08 1.3E-12 92.3 13.0 104 547-652 142-252 (263)
166 KOG3081 Vesicle coat complex C 98.8 5.5E-06 1.2E-10 75.4 23.8 179 459-679 110-293 (299)
167 KOG0543 FKBP-type peptidyl-pro 98.8 1.3E-07 2.8E-12 91.5 14.2 101 547-648 257-357 (397)
168 KOG2053 Mitochondrial inherita 98.8 0.0003 6.5E-09 75.0 39.7 230 245-492 21-259 (932)
169 PRK15331 chaperone protein Sic 98.8 1.3E-07 2.7E-12 80.5 12.0 113 570-685 26-138 (165)
170 PRK10803 tol-pal system protei 98.8 1.9E-07 4.2E-12 88.9 14.7 105 580-686 141-252 (263)
171 PRK11906 transcriptional regul 98.8 3.2E-07 6.9E-12 91.2 16.5 163 496-677 258-433 (458)
172 PRK10153 DNA-binding transcrip 98.8 3.7E-07 8.1E-12 96.0 18.1 144 451-616 332-488 (517)
173 COG4105 ComL DNA uptake lipopr 98.8 1.7E-06 3.7E-11 79.1 19.6 156 458-632 35-221 (254)
174 COG3898 Uncharacterized membra 98.7 7.8E-05 1.7E-09 71.6 29.9 288 352-686 94-397 (531)
175 COG0457 NrfG FOG: TPR repeat [ 98.7 1.5E-05 3.3E-10 76.7 26.5 223 436-683 37-268 (291)
176 KOG2053 Mitochondrial inherita 98.7 0.00027 5.9E-09 75.3 36.0 373 283-676 20-498 (932)
177 PF12688 TPR_5: Tetratrico pep 98.7 3.1E-07 6.8E-12 75.4 11.7 96 548-645 2-103 (120)
178 COG4105 ComL DNA uptake lipopr 98.7 7.3E-06 1.6E-10 75.1 21.5 169 434-615 46-238 (254)
179 KOG3081 Vesicle coat complex C 98.7 7E-06 1.5E-10 74.7 20.9 201 458-687 73-278 (299)
180 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 5.2E-07 1.1E-11 90.5 15.3 121 552-677 174-294 (395)
181 COG4700 Uncharacterized protei 98.7 5.5E-06 1.2E-10 70.9 18.9 130 547-679 89-221 (251)
182 PF12688 TPR_5: Tetratrico pep 98.7 5.4E-07 1.2E-11 74.0 12.1 96 582-679 2-103 (120)
183 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 5.8E-07 1.3E-11 90.1 14.3 121 462-607 174-294 (395)
184 COG4785 NlpI Lipoprotein NlpI, 98.6 6.4E-06 1.4E-10 72.3 17.4 91 434-527 77-167 (297)
185 KOG4648 Uncharacterized conser 98.6 1E-07 2.2E-12 89.0 6.4 218 434-685 109-335 (536)
186 PF14559 TPR_19: Tetratricopep 98.6 1.9E-07 4.1E-12 69.4 6.6 63 559-621 3-65 (68)
187 PF14559 TPR_19: Tetratricopep 98.6 1.1E-07 2.5E-12 70.6 5.4 67 592-660 2-68 (68)
188 KOG3616 Selective LIM binding 98.6 0.00094 2E-08 69.4 34.6 154 36-202 745-910 (1636)
189 PF13371 TPR_9: Tetratricopept 98.6 3.5E-07 7.7E-12 69.0 8.1 67 554-620 2-68 (73)
190 KOG4234 TPR repeat-containing 98.5 1E-06 2.2E-11 76.1 10.8 112 548-661 96-212 (271)
191 COG4700 Uncharacterized protei 98.5 2.7E-05 5.8E-10 66.8 19.0 152 469-645 68-221 (251)
192 COG1729 Uncharacterized protei 98.5 2.5E-06 5.4E-11 78.9 13.8 104 550-655 144-253 (262)
193 PF13512 TPR_18: Tetratricopep 98.5 2.8E-06 6.1E-11 70.8 12.1 119 547-686 10-134 (142)
194 COG5107 RNA14 Pre-mRNA 3'-end 98.5 0.0017 3.7E-08 63.8 33.5 401 265-684 35-535 (660)
195 COG1729 Uncharacterized protei 98.5 2.4E-06 5.3E-11 79.0 12.9 108 496-620 144-254 (262)
196 KOG4234 TPR repeat-containing 98.5 8.2E-07 1.8E-11 76.7 9.0 102 583-686 97-203 (271)
197 KOG2300 Uncharacterized conser 98.5 0.0019 4.2E-08 64.1 33.4 205 469-688 287-522 (629)
198 PF13371 TPR_9: Tetratricopept 98.5 6.1E-07 1.3E-11 67.7 7.6 69 588-658 2-70 (73)
199 PF13512 TPR_18: Tetratricopep 98.5 2.8E-06 6.2E-11 70.8 11.6 88 492-596 9-99 (142)
200 COG4785 NlpI Lipoprotein NlpI, 98.5 2.3E-05 5E-10 68.9 17.5 191 308-523 67-267 (297)
201 PF06552 TOM20_plant: Plant sp 98.5 4.9E-07 1.1E-11 77.5 7.0 67 563-629 7-83 (186)
202 KOG4648 Uncharacterized conser 98.4 7.6E-07 1.7E-11 83.3 8.1 104 550-655 100-203 (536)
203 KOG2796 Uncharacterized conser 98.4 5E-05 1.1E-09 68.9 19.1 165 439-625 166-333 (366)
204 KOG1914 mRNA cleavage and poly 98.4 0.004 8.7E-08 62.9 36.8 366 296-680 10-464 (656)
205 PLN03098 LPA1 LOW PSII ACCUMUL 98.4 1.1E-06 2.5E-11 87.2 8.4 70 576-647 70-142 (453)
206 KOG2471 TPR repeat-containing 98.4 0.0012 2.5E-08 65.6 28.4 129 270-433 238-375 (696)
207 KOG2300 Uncharacterized conser 98.3 0.0042 9E-08 61.9 40.4 448 174-675 7-551 (629)
208 KOG2796 Uncharacterized conser 98.3 6.4E-05 1.4E-09 68.2 17.8 147 494-661 178-333 (366)
209 KOG4555 TPR repeat-containing 98.3 1.2E-05 2.5E-10 64.5 11.5 97 550-648 46-146 (175)
210 PF13424 TPR_12: Tetratricopep 98.3 1.6E-06 3.4E-11 66.4 6.2 67 544-610 2-75 (78)
211 PF13424 TPR_12: Tetratricopep 98.3 2.9E-06 6.3E-11 64.9 7.6 74 491-577 3-76 (78)
212 KOG2471 TPR repeat-containing 98.3 0.00046 1E-08 68.3 23.9 128 548-678 510-682 (696)
213 PLN03098 LPA1 LOW PSII ACCUMUL 98.3 3.1E-06 6.7E-11 84.2 8.7 71 541-611 69-142 (453)
214 KOG1258 mRNA processing protei 98.2 0.011 2.4E-07 60.9 35.6 374 258-665 65-489 (577)
215 KOG4555 TPR repeat-containing 98.2 7.4E-05 1.6E-09 60.0 13.3 97 584-682 46-146 (175)
216 PF06552 TOM20_plant: Plant sp 98.2 1.2E-05 2.7E-10 69.1 9.6 90 597-686 7-115 (186)
217 KOG4507 Uncharacterized conser 98.2 0.00034 7.4E-09 70.7 20.8 102 585-688 611-713 (886)
218 KOG4642 Chaperone-dependent E3 98.2 6.4E-06 1.4E-10 73.5 7.3 95 550-646 13-107 (284)
219 PF04184 ST7: ST7 protein; In 98.0 0.0005 1.1E-08 68.9 18.6 180 410-619 185-384 (539)
220 PF07079 DUF1347: Protein of u 98.0 0.019 4E-07 57.1 33.4 125 547-676 379-520 (549)
221 KOG0985 Vesicle coat protein c 98.0 0.015 3.2E-07 63.3 29.9 238 382-671 1104-1374(1666)
222 KOG1586 Protein required for f 98.0 0.00058 1.3E-08 61.1 16.7 182 410-617 31-231 (288)
223 PF13431 TPR_17: Tetratricopep 98.0 7.2E-06 1.6E-10 50.3 3.2 32 640-671 2-33 (34)
224 PF05843 Suf: Suppressor of fo 98.0 6.8E-05 1.5E-09 73.2 11.7 136 548-685 2-141 (280)
225 KOG1586 Protein required for f 98.0 0.00079 1.7E-08 60.3 16.9 134 549-685 76-229 (288)
226 PF13428 TPR_14: Tetratricopep 98.0 1.7E-05 3.6E-10 52.5 4.9 38 584-621 4-41 (44)
227 KOG4642 Chaperone-dependent E3 97.9 3.3E-05 7.2E-10 69.1 7.3 101 584-686 13-113 (284)
228 PF13428 TPR_14: Tetratricopep 97.9 2.5E-05 5.5E-10 51.6 5.0 42 548-589 2-43 (44)
229 PF10345 Cohesin_load: Cohesin 97.9 0.05 1.1E-06 59.9 33.1 313 342-669 59-467 (608)
230 KOG2610 Uncharacterized conser 97.9 0.0011 2.4E-08 62.6 16.9 124 465-606 111-234 (491)
231 KOG2396 HAT (Half-A-TPR) repea 97.8 0.043 9.3E-07 55.3 33.1 408 262-684 95-564 (568)
232 KOG0545 Aryl-hydrocarbon recep 97.8 9.9E-05 2.2E-09 66.3 9.0 106 546-653 177-300 (329)
233 PF07719 TPR_2: Tetratricopept 97.8 3.6E-05 7.9E-10 47.6 4.5 34 651-684 1-34 (34)
234 PF00515 TPR_1: Tetratricopept 97.8 2.7E-05 5.9E-10 48.2 3.9 34 651-684 1-34 (34)
235 PF05843 Suf: Suppressor of fo 97.8 0.00087 1.9E-08 65.5 16.1 136 458-615 2-141 (280)
236 PF04184 ST7: ST7 protein; In 97.8 0.0023 5.1E-08 64.3 18.5 101 583-685 261-380 (539)
237 KOG0530 Protein farnesyltransf 97.8 0.017 3.7E-07 53.1 21.8 215 410-661 43-269 (318)
238 PF13431 TPR_17: Tetratricopep 97.7 3.1E-05 6.7E-10 47.5 3.1 32 570-601 2-33 (34)
239 PF10300 DUF3808: Protein of u 97.7 0.003 6.5E-08 66.4 19.8 178 415-610 179-376 (468)
240 PF02259 FAT: FAT domain; Int 97.7 0.017 3.7E-07 59.2 24.8 135 458-592 147-303 (352)
241 KOG2610 Uncharacterized conser 97.7 0.0033 7.2E-08 59.5 16.6 159 434-615 115-283 (491)
242 KOG1585 Protein required for f 97.7 0.0051 1.1E-07 55.7 17.0 166 458-640 72-250 (308)
243 KOG1585 Protein required for f 97.7 0.011 2.3E-07 53.7 18.7 199 458-674 32-250 (308)
244 KOG0545 Aryl-hydrocarbon recep 97.6 0.00041 8.8E-09 62.5 9.4 102 581-684 178-297 (329)
245 PF00515 TPR_1: Tetratricopept 97.6 0.00014 2.9E-09 45.0 4.3 32 582-613 2-33 (34)
246 COG5107 RNA14 Pre-mRNA 3'-end 97.6 0.1 2.3E-06 51.8 29.1 373 295-680 31-495 (660)
247 PF10345 Cohesin_load: Cohesin 97.6 0.21 4.6E-06 55.0 36.6 378 289-681 38-524 (608)
248 PF07719 TPR_2: Tetratricopept 97.5 0.00021 4.6E-09 44.1 5.0 33 582-614 2-34 (34)
249 COG3118 Thioredoxin domain-con 97.5 0.031 6.8E-07 52.7 21.0 153 458-632 135-289 (304)
250 PF02259 FAT: FAT domain; Int 97.5 0.025 5.3E-07 58.0 23.0 138 544-683 143-341 (352)
251 PF10300 DUF3808: Protein of u 97.5 0.17 3.8E-06 53.4 29.5 182 478-682 178-378 (468)
252 PF07079 DUF1347: Protein of u 97.5 0.13 2.8E-06 51.4 37.5 145 124-284 8-179 (549)
253 COG2909 MalT ATP-dependent tra 97.5 0.25 5.4E-06 53.8 30.4 252 305-608 414-686 (894)
254 COG3118 Thioredoxin domain-con 97.5 0.038 8.3E-07 52.1 20.5 163 308-519 136-298 (304)
255 PF13281 DUF4071: Domain of un 97.5 0.018 4E-07 57.2 19.7 174 492-684 140-338 (374)
256 KOG4507 Uncharacterized conser 97.5 0.012 2.5E-07 60.1 18.1 99 273-374 213-314 (886)
257 KOG0376 Serine-threonine phosp 97.4 0.00014 3E-09 72.5 4.4 132 547-685 4-135 (476)
258 KOG0376 Serine-threonine phosp 97.4 0.00019 4.2E-09 71.4 5.4 100 586-687 9-108 (476)
259 COG2909 MalT ATP-dependent tra 97.4 0.29 6.3E-06 53.4 28.7 301 339-677 344-685 (894)
260 KOG1550 Extracellular protein 97.4 0.092 2E-06 56.8 25.2 83 562-649 454-541 (552)
261 PF13181 TPR_8: Tetratricopept 97.3 0.00041 8.9E-09 42.8 4.2 33 652-684 2-34 (34)
262 PF03704 BTAD: Bacterial trans 97.3 0.0048 1E-07 53.8 12.0 117 548-679 7-124 (146)
263 KOG1258 mRNA processing protei 97.2 0.35 7.5E-06 50.4 28.8 126 544-671 294-420 (577)
264 KOG1550 Extracellular protein 97.2 0.18 3.8E-06 54.7 25.6 294 322-685 228-543 (552)
265 COG2976 Uncharacterized protei 97.2 0.03 6.4E-07 49.3 15.3 117 565-684 70-192 (207)
266 KOG0551 Hsp90 co-chaperone CNS 97.2 0.0074 1.6E-07 57.3 12.4 101 546-648 80-184 (390)
267 PF03704 BTAD: Bacterial trans 97.1 0.0092 2E-07 52.0 12.4 63 581-645 62-124 (146)
268 KOG0530 Protein farnesyltransf 97.1 0.25 5.3E-06 45.8 21.9 225 410-657 60-309 (318)
269 KOG0985 Vesicle coat protein c 97.1 0.74 1.6E-05 50.9 41.2 97 410-523 1065-1163(1666)
270 KOG1308 Hsp70-interacting prot 97.0 0.00033 7.2E-09 66.5 2.1 124 553-679 120-243 (377)
271 KOG0890 Protein kinase of the 97.0 0.82 1.8E-05 55.4 28.9 135 544-680 1667-1833(2382)
272 PF13281 DUF4071: Domain of un 97.0 0.077 1.7E-06 53.0 18.2 169 458-650 142-338 (374)
273 PF13176 TPR_7: Tetratricopept 97.0 0.00085 1.8E-08 41.9 3.0 31 653-683 1-31 (36)
274 COG2976 Uncharacterized protei 96.9 0.055 1.2E-06 47.7 14.5 119 475-613 70-191 (207)
275 PF13181 TPR_8: Tetratricopept 96.9 0.0018 3.8E-08 39.9 4.1 30 583-612 3-32 (34)
276 KOG1308 Hsp70-interacting prot 96.9 0.0011 2.4E-08 63.1 4.5 90 591-682 124-213 (377)
277 COG0790 FOG: TPR repeat, SEL1 96.9 0.25 5.4E-06 48.9 21.6 82 434-522 53-142 (292)
278 PF08424 NRDE-2: NRDE-2, neces 96.8 0.096 2.1E-06 52.3 17.9 159 414-577 6-184 (321)
279 KOG0551 Hsp90 co-chaperone CNS 96.7 0.0073 1.6E-07 57.4 8.1 98 582-681 82-183 (390)
280 PF13174 TPR_6: Tetratricopept 96.7 0.0026 5.6E-08 38.7 3.5 33 652-684 1-33 (33)
281 PF09613 HrpB1_HrpK: Bacterial 96.6 0.16 3.5E-06 43.7 14.9 120 547-671 10-129 (160)
282 PF04910 Tcf25: Transcriptiona 96.6 0.22 4.8E-06 50.3 18.6 100 547-648 103-224 (360)
283 PF04910 Tcf25: Transcriptiona 96.6 0.16 3.4E-06 51.4 17.5 168 410-614 11-226 (360)
284 PF14561 TPR_20: Tetratricopep 96.5 0.05 1.1E-06 42.3 10.6 79 441-520 7-85 (90)
285 PF08424 NRDE-2: NRDE-2, neces 96.5 0.17 3.6E-06 50.6 16.7 146 443-611 6-184 (321)
286 COG0790 FOG: TPR repeat, SEL1 96.4 1.1 2.4E-05 44.2 23.5 161 410-629 58-236 (292)
287 KOG3824 Huntingtin interacting 96.3 0.014 2.9E-07 54.8 7.2 74 551-624 120-193 (472)
288 PF13174 TPR_6: Tetratricopept 96.2 0.0071 1.5E-07 36.7 3.7 31 583-613 2-32 (33)
289 COG4649 Uncharacterized protei 96.2 0.53 1.2E-05 40.7 15.6 144 467-627 68-212 (221)
290 PF08631 SPO22: Meiosis protei 96.2 1.4 3.1E-05 43.1 23.5 129 382-523 35-187 (278)
291 PF13176 TPR_7: Tetratricopept 96.1 0.0099 2.1E-07 37.0 3.9 25 584-608 2-26 (36)
292 KOG2396 HAT (Half-A-TPR) repea 96.1 0.068 1.5E-06 54.0 11.3 92 564-656 88-179 (568)
293 PF14561 TPR_20: Tetratricopep 96.1 0.12 2.5E-06 40.3 10.4 67 566-632 7-75 (90)
294 PF09986 DUF2225: Uncharacteri 95.9 0.18 3.9E-06 46.7 12.9 104 507-623 91-208 (214)
295 KOG2041 WD40 repeat protein [G 95.9 1.1 2.4E-05 47.5 19.0 171 382-606 692-877 (1189)
296 smart00028 TPR Tetratricopepti 95.9 0.012 2.5E-07 35.3 3.4 32 652-683 2-33 (34)
297 PF08631 SPO22: Meiosis protei 95.8 2.1 4.6E-05 41.8 26.9 228 434-679 5-274 (278)
298 PF04781 DUF627: Protein of un 95.8 0.17 3.7E-06 40.3 10.1 67 384-450 35-106 (111)
299 TIGR02561 HrpB1_HrpK type III 95.8 0.45 9.7E-06 40.2 13.1 85 548-632 11-95 (153)
300 PRK10941 hypothetical protein; 95.8 0.11 2.3E-06 49.9 10.9 73 548-620 182-254 (269)
301 KOG0890 Protein kinase of the 95.7 7.8 0.00017 47.7 29.5 107 579-689 1668-1793(2382)
302 PRK10941 hypothetical protein; 95.7 0.13 2.7E-06 49.4 11.1 76 583-660 183-258 (269)
303 PF13041 PPR_2: PPR repeat fam 95.7 0.033 7.3E-07 37.8 5.3 42 176-217 5-46 (50)
304 KOG2041 WD40 repeat protein [G 95.4 0.61 1.3E-05 49.2 15.4 67 448-520 685-761 (1189)
305 PF09613 HrpB1_HrpK: Bacterial 95.4 0.23 4.9E-06 42.8 10.6 85 582-668 11-95 (160)
306 PF14853 Fis1_TPR_C: Fis1 C-te 95.4 0.061 1.3E-06 36.7 5.5 43 307-351 2-44 (53)
307 PF13041 PPR_2: PPR repeat fam 95.3 0.063 1.4E-06 36.4 5.7 45 305-349 2-46 (50)
308 KOG3824 Huntingtin interacting 95.3 0.056 1.2E-06 50.8 6.9 70 588-659 123-192 (472)
309 PF14853 Fis1_TPR_C: Fis1 C-te 95.2 0.13 2.7E-06 35.2 6.7 32 585-616 5-36 (53)
310 smart00028 TPR Tetratricopepti 95.1 0.033 7.2E-07 33.2 3.5 30 583-612 3-32 (34)
311 PF04781 DUF627: Protein of un 95.1 0.23 5E-06 39.6 8.8 46 635-680 62-107 (111)
312 COG3914 Spy Predicted O-linked 94.9 0.41 8.9E-06 49.7 12.4 125 561-686 45-177 (620)
313 PF12968 DUF3856: Domain of Un 94.8 0.64 1.4E-05 37.3 10.5 62 617-680 57-129 (144)
314 KOG1464 COP9 signalosome, subu 94.8 1.6 3.6E-05 40.6 14.7 95 585-681 149-261 (440)
315 PF10602 RPN7: 26S proteasome 94.8 0.19 4E-06 45.1 8.8 62 548-609 37-101 (177)
316 PF13374 TPR_10: Tetratricopep 94.7 0.073 1.6E-06 34.3 4.5 37 123-159 3-39 (42)
317 PF09986 DUF2225: Uncharacteri 94.6 0.19 4E-06 46.6 8.5 29 652-680 166-194 (214)
318 PF12968 DUF3856: Domain of Un 94.6 1.9 4.2E-05 34.7 12.8 101 501-609 17-128 (144)
319 COG5191 Uncharacterized conser 94.6 0.048 1E-06 51.4 4.5 85 570-656 96-181 (435)
320 COG4976 Predicted methyltransf 94.6 0.063 1.4E-06 48.4 5.0 59 556-614 4-62 (287)
321 PRK15180 Vi polysaccharide bio 94.5 0.42 9.1E-06 48.1 10.9 124 470-615 302-425 (831)
322 PRK15180 Vi polysaccharide bio 94.5 0.2 4.3E-06 50.3 8.6 124 559-684 301-424 (831)
323 COG4976 Predicted methyltransf 94.3 0.054 1.2E-06 48.8 4.1 60 590-651 4-63 (287)
324 KOG1310 WD40 repeat protein [G 94.1 0.1 2.3E-06 52.9 6.0 105 544-650 371-478 (758)
325 KOG3783 Uncharacterized conser 94.1 1.4 2.9E-05 45.6 13.8 247 299-578 260-522 (546)
326 KOG3364 Membrane protein invol 94.1 0.36 7.7E-06 39.8 7.9 76 580-657 31-111 (149)
327 KOG3783 Uncharacterized conser 94.0 8.8 0.00019 40.0 20.1 126 281-423 199-333 (546)
328 KOG3364 Membrane protein invol 93.6 1.4 3E-05 36.5 10.4 74 546-619 31-109 (149)
329 PF13374 TPR_10: Tetratricopep 93.6 0.15 3.2E-06 32.8 4.2 30 652-681 3-32 (42)
330 COG5191 Uncharacterized conser 93.5 0.057 1.2E-06 50.9 2.8 84 604-689 96-180 (435)
331 PF07721 TPR_4: Tetratricopept 93.3 0.095 2.1E-06 29.7 2.5 25 56-80 2-26 (26)
332 TIGR02561 HrpB1_HrpK type III 93.2 1.2 2.6E-05 37.8 9.7 83 583-667 12-94 (153)
333 PF10602 RPN7: 26S proteasome 93.1 0.73 1.6E-05 41.3 9.2 102 308-421 38-141 (177)
334 PF04053 Coatomer_WDAD: Coatom 92.9 7.6 0.00017 40.6 17.5 43 559-606 330-372 (443)
335 COG3914 Spy Predicted O-linked 92.9 2.5 5.5E-05 44.2 13.5 134 476-631 50-192 (620)
336 KOG1464 COP9 signalosome, subu 92.8 8.5 0.00019 36.1 17.3 40 410-449 44-92 (440)
337 KOG4814 Uncharacterized conser 92.7 0.86 1.9E-05 47.7 10.0 88 589-678 362-455 (872)
338 PF12854 PPR_1: PPR repeat 92.7 0.3 6.5E-06 29.8 4.3 28 270-297 5-32 (34)
339 PF12854 PPR_1: PPR repeat 92.5 0.3 6.5E-06 29.8 4.1 30 303-332 4-33 (34)
340 KOG4814 Uncharacterized conser 92.5 1 2.2E-05 47.2 10.1 102 495-610 356-457 (872)
341 KOG0128 RNA-binding protein SA 92.4 20 0.00044 39.4 30.7 219 265-502 106-355 (881)
342 PF07720 TPR_3: Tetratricopept 92.3 0.39 8.5E-06 29.7 4.4 34 651-684 1-36 (36)
343 KOG1538 Uncharacterized conser 92.3 5.9 0.00013 41.9 15.2 60 308-368 587-657 (1081)
344 KOG2422 Uncharacterized conser 92.3 8.5 0.00019 40.3 16.2 140 451-612 279-450 (665)
345 KOG2581 26S proteasome regulat 92.2 9.7 0.00021 38.0 15.8 135 467-615 136-281 (493)
346 KOG1310 WD40 repeat protein [G 91.9 0.5 1.1E-05 48.2 7.0 88 595-684 388-478 (758)
347 COG4649 Uncharacterized protei 91.7 8.5 0.00018 33.6 15.5 25 310-334 98-122 (221)
348 PF12862 Apc5: Anaphase-promot 91.4 2.7 5.9E-05 33.0 9.6 65 502-577 7-71 (94)
349 KOG0529 Protein geranylgeranyl 91.4 17 0.00038 36.6 19.6 128 562-690 90-234 (421)
350 KOG2422 Uncharacterized conser 91.3 17 0.00036 38.3 17.0 165 507-682 252-450 (665)
351 COG5159 RPN6 26S proteasome re 91.3 14 0.00029 35.2 18.7 167 309-488 128-316 (421)
352 KOG1839 Uncharacterized protei 91.3 2.1 4.6E-05 49.1 11.8 170 496-680 935-1128(1236)
353 PRK13184 pknD serine/threonine 91.3 33 0.00071 39.5 27.6 95 279-377 482-586 (932)
354 KOG0128 RNA-binding protein SA 90.9 29 0.00063 38.3 25.9 119 435-572 439-559 (881)
355 PF12862 Apc5: Anaphase-promot 90.9 3.7 7.9E-05 32.3 9.9 59 468-526 9-74 (94)
356 PF07721 TPR_4: Tetratricopept 90.2 0.37 8E-06 27.2 2.7 24 652-675 2-25 (26)
357 PF11207 DUF2989: Protein of u 90.2 13 0.00029 33.6 13.5 78 472-567 121-198 (203)
358 TIGR00756 PPR pentatricopeptid 90.0 0.67 1.4E-05 28.0 4.1 33 308-340 2-34 (35)
359 COG2912 Uncharacterized conser 90.0 2.2 4.8E-05 40.4 8.9 72 549-620 183-254 (269)
360 KOG1538 Uncharacterized conser 89.9 30 0.00066 36.9 18.5 179 461-677 636-830 (1081)
361 KOG2581 26S proteasome regulat 89.3 4.3 9.4E-05 40.4 10.5 141 547-689 124-285 (493)
362 PF04053 Coatomer_WDAD: Coatom 89.2 5.7 0.00012 41.5 12.3 92 385-511 298-391 (443)
363 KOG1839 Uncharacterized protei 89.2 2.3 5E-05 48.9 9.9 170 460-645 935-1127(1236)
364 PF04190 DUF410: Protein of un 89.1 22 0.00048 34.2 17.8 40 291-331 76-115 (260)
365 COG2912 Uncharacterized conser 89.1 3.1 6.8E-05 39.4 9.3 74 584-659 184-257 (269)
366 COG1747 Uncharacterized N-term 89.1 31 0.00067 35.9 18.6 65 304-373 97-161 (711)
367 KOG0529 Protein geranylgeranyl 88.9 28 0.00061 35.1 16.7 144 354-505 40-195 (421)
368 TIGR00756 PPR pentatricopeptid 88.8 0.72 1.6E-05 27.9 3.5 30 179-208 5-34 (35)
369 PF10516 SHNi-TPR: SHNi-TPR; 88.7 0.81 1.8E-05 28.6 3.5 31 652-682 2-32 (38)
370 PF07720 TPR_3: Tetratricopept 88.6 1.7 3.7E-05 26.8 4.9 30 583-612 3-34 (36)
371 KOG1463 26S proteasome regulat 88.6 26 0.00056 34.3 19.7 173 461-648 132-318 (411)
372 PRK11619 lytic murein transgly 88.3 47 0.001 36.9 35.7 357 265-677 89-465 (644)
373 COG1747 Uncharacterized N-term 88.2 35 0.00077 35.5 20.9 214 434-686 78-294 (711)
374 PF13812 PPR_3: Pentatricopept 87.7 1.3 2.8E-05 26.6 4.2 33 307-339 2-34 (34)
375 PF15015 NYD-SP12_N: Spermatog 87.4 3.1 6.7E-05 41.5 8.3 91 551-643 180-288 (569)
376 TIGR03504 FimV_Cterm FimV C-te 86.8 0.81 1.7E-05 29.8 2.8 26 310-335 3-28 (44)
377 PF10516 SHNi-TPR: SHNi-TPR; 86.6 1.7 3.7E-05 27.2 4.0 35 123-157 2-36 (38)
378 COG3629 DnrI DNA-binding trans 86.5 3.1 6.8E-05 39.9 7.8 65 580-646 152-216 (280)
379 COG3629 DnrI DNA-binding trans 86.4 4.3 9.4E-05 39.0 8.7 64 458-523 154-217 (280)
380 KOG3807 Predicted membrane pro 85.5 38 0.00082 33.0 19.2 103 410-524 201-306 (556)
381 PF10255 Paf67: RNA polymerase 84.8 6.1 0.00013 40.3 9.3 136 23-185 75-227 (404)
382 PF10373 EST1_DNA_bind: Est1 D 84.4 3.2 7E-05 40.6 7.3 62 566-627 1-62 (278)
383 KOG3807 Predicted membrane pro 84.0 44 0.00096 32.6 17.9 30 549-578 277-306 (556)
384 PF10579 Rapsyn_N: Rapsyn N-te 83.7 4.9 0.00011 29.9 5.9 60 498-574 11-70 (80)
385 TIGR03504 FimV_Cterm FimV C-te 83.1 0.55 1.2E-05 30.6 0.8 25 26-50 2-26 (44)
386 PF12739 TRAPPC-Trs85: ER-Golg 82.7 66 0.0014 33.6 17.6 92 582-683 301-402 (414)
387 PF15015 NYD-SP12_N: Spermatog 82.3 8.8 0.00019 38.5 8.8 55 619-675 232-286 (569)
388 COG4941 Predicted RNA polymera 82.1 44 0.00094 32.8 13.0 93 562-657 311-405 (415)
389 PF10373 EST1_DNA_bind: Est1 D 81.3 3.9 8.5E-05 40.0 6.5 62 600-663 1-62 (278)
390 PF01535 PPR: PPR repeat; Int 81.1 2.2 4.7E-05 24.9 2.9 27 308-334 2-28 (31)
391 PF01535 PPR: PPR repeat; Int 81.0 2 4.4E-05 25.0 2.8 27 178-204 4-30 (31)
392 COG5159 RPN6 26S proteasome re 80.6 55 0.0012 31.3 24.4 171 461-648 129-316 (421)
393 COG3947 Response regulator con 78.9 64 0.0014 31.1 15.9 53 588-642 286-338 (361)
394 PF10579 Rapsyn_N: Rapsyn N-te 78.9 22 0.00047 26.6 7.8 55 554-608 13-70 (80)
395 smart00386 HAT HAT (Half-A-TPR 78.7 5.3 0.00012 23.4 4.2 27 562-588 2-28 (33)
396 PF11817 Foie-gras_1: Foie gra 78.1 6.8 0.00015 37.5 6.8 82 40-148 162-244 (247)
397 PF13812 PPR_3: Pentatricopept 78.0 4.3 9.2E-05 24.2 3.6 28 178-205 5-32 (34)
398 COG5187 RPN7 26S proteasome re 77.2 19 0.00042 34.3 8.9 110 581-692 115-233 (412)
399 COG3947 Response regulator con 76.9 38 0.00083 32.5 10.7 61 548-608 280-340 (361)
400 PF11207 DUF2989: Protein of u 76.2 61 0.0013 29.5 18.5 88 424-513 107-198 (203)
401 PF00244 14-3-3: 14-3-3 protei 76.1 72 0.0016 30.2 15.4 58 277-334 6-65 (236)
402 KOG0276 Vesicle coat complex C 76.1 47 0.001 35.3 12.1 25 549-573 668-692 (794)
403 smart00386 HAT HAT (Half-A-TPR 75.4 6.9 0.00015 22.9 4.1 24 635-658 5-28 (33)
404 PF11817 Foie-gras_1: Foie gra 75.4 34 0.00075 32.7 10.8 61 547-607 178-244 (247)
405 COG4941 Predicted RNA polymera 74.5 92 0.002 30.7 15.7 25 407-431 210-234 (415)
406 PF09670 Cas_Cas02710: CRISPR- 74.1 53 0.0012 33.7 12.3 128 550-680 134-270 (379)
407 PF14863 Alkyl_sulf_dimr: Alky 73.9 1.8 4E-05 36.8 1.5 50 22-71 69-120 (141)
408 COG4455 ImpE Protein of avirul 70.7 30 0.00064 31.7 8.1 62 554-615 8-69 (273)
409 KOG0546 HSP90 co-chaperone CPR 70.6 3.1 6.8E-05 40.7 2.3 110 549-660 224-352 (372)
410 PF10255 Paf67: RNA polymerase 70.2 11 0.00023 38.6 6.1 63 459-523 124-194 (404)
411 KOG4279 Serine/threonine prote 68.5 1.5E+02 0.0032 32.8 13.8 115 379-508 198-335 (1226)
412 PF04348 LppC: LppC putative l 68.2 1.7 3.6E-05 46.8 0.0 98 19-146 20-122 (536)
413 PF04348 LppC: LppC putative l 68.0 1.7 3.7E-05 46.8 0.0 114 444-575 11-126 (536)
414 KOG2062 26S proteasome regulat 67.3 2.1E+02 0.0045 31.7 30.3 243 381-666 396-657 (929)
415 KOG1920 IkappaB kinase complex 67.2 2.6E+02 0.0056 32.9 21.2 25 551-575 1003-1027(1265)
416 KOG0546 HSP90 co-chaperone CPR 67.1 8.1 0.00018 37.9 4.3 83 547-629 275-357 (372)
417 PF09670 Cas_Cas02710: CRISPR- 66.4 1.2E+02 0.0026 31.2 12.9 58 463-522 137-198 (379)
418 PF04097 Nic96: Nup93/Nic96; 64.9 2.3E+02 0.005 31.5 20.3 23 425-447 259-283 (613)
419 PRK11619 lytic murein transgly 63.7 2.5E+02 0.0053 31.4 33.2 117 559-678 253-373 (644)
420 PF09205 DUF1955: Domain of un 63.6 66 0.0014 27.0 8.1 61 276-336 90-150 (161)
421 PRK13184 pknD serine/threonine 63.0 3E+02 0.0065 32.1 33.7 86 287-375 534-623 (932)
422 PF11846 DUF3366: Domain of un 62.6 27 0.00058 31.9 6.8 44 602-648 132-175 (193)
423 PF04190 DUF410: Protein of un 62.2 1.5E+02 0.0033 28.5 23.1 80 382-486 90-170 (260)
424 KOG0687 26S proteasome regulat 61.5 1.1E+02 0.0024 30.1 10.4 26 458-483 105-130 (393)
425 COG4455 ImpE Protein of avirul 61.5 62 0.0013 29.8 8.3 54 434-488 13-66 (273)
426 KOG0686 COP9 signalosome, subu 61.0 55 0.0012 33.1 8.7 98 494-608 151-256 (466)
427 KOG0687 26S proteasome regulat 60.1 1.8E+02 0.0039 28.7 13.7 28 547-574 104-131 (393)
428 PRK12798 chemotaxis protein; R 59.3 2.2E+02 0.0047 29.3 21.6 121 434-573 197-321 (421)
429 COG5536 BET4 Protein prenyltra 58.8 1.5E+02 0.0033 28.4 10.7 125 563-687 90-229 (328)
430 COG5536 BET4 Protein prenyltra 57.9 1.6E+02 0.0035 28.3 10.6 119 544-662 105-238 (328)
431 smart00299 CLH Clathrin heavy 57.9 1.2E+02 0.0025 25.7 14.7 37 468-506 18-54 (140)
432 KOG1463 26S proteasome regulat 57.8 2E+02 0.0044 28.5 21.6 166 434-613 140-319 (411)
433 cd02682 MIT_AAA_Arch MIT: doma 56.8 70 0.0015 23.8 6.7 23 586-608 11-33 (75)
434 PF08311 Mad3_BUB1_I: Mad3/BUB 56.8 1.2E+02 0.0025 25.4 13.2 85 507-608 40-126 (126)
435 cd02680 MIT_calpain7_2 MIT: do 56.6 24 0.00052 26.2 4.2 18 506-523 19-36 (75)
436 PF14863 Alkyl_sulf_dimr: Alky 55.5 43 0.00093 28.6 6.2 49 582-630 71-119 (141)
437 KOG0276 Vesicle coat complex C 55.5 95 0.0021 33.2 9.6 74 437-522 622-695 (794)
438 KOG2114 Vacuolar assembly/sort 55.4 3.5E+02 0.0076 30.5 24.6 63 280-343 342-404 (933)
439 cd02682 MIT_AAA_Arch MIT: doma 54.6 87 0.0019 23.3 7.9 41 123-164 7-47 (75)
440 KOG4014 Uncharacterized conser 52.7 1.7E+02 0.0037 26.1 12.7 190 304-523 32-234 (248)
441 PHA02537 M terminase endonucle 51.2 1.8E+02 0.004 27.2 10.1 38 378-426 165-211 (230)
442 PF09797 NatB_MDM20: N-acetylt 51.2 78 0.0017 32.4 8.7 45 563-607 199-243 (365)
443 KOG2561 Adaptor protein NUB1, 50.4 81 0.0017 32.2 7.9 25 655-679 271-295 (568)
444 cd02680 MIT_calpain7_2 MIT: do 50.1 32 0.00069 25.6 4.0 18 559-576 18-35 (75)
445 PF09797 NatB_MDM20: N-acetylt 49.9 1.5E+02 0.0034 30.2 10.6 44 438-482 199-242 (365)
446 PF04212 MIT: MIT (microtubule 49.1 45 0.00098 24.2 4.8 22 554-575 12-33 (69)
447 KOG4422 Uncharacterized conser 48.2 3.3E+02 0.0072 28.1 34.6 68 304-372 271-342 (625)
448 TIGR02710 CRISPR-associated pr 47.5 3.3E+02 0.0071 27.9 12.2 55 552-606 135-196 (380)
449 KOG4521 Nuclear pore complex, 45.6 4.8E+02 0.01 30.8 13.6 168 458-649 921-1135(1480)
450 PF10952 DUF2753: Protein of u 45.1 1.3E+02 0.0028 24.9 6.9 65 550-614 4-87 (140)
451 PF10037 MRP-S27: Mitochondria 44.8 1.2E+02 0.0026 31.5 8.7 80 275-355 106-186 (429)
452 PF12739 TRAPPC-Trs85: ER-Golg 44.6 3.9E+02 0.0085 27.9 16.7 170 453-648 204-401 (414)
453 COG3107 LppC Putative lipoprot 43.5 4.4E+02 0.0095 28.2 14.7 76 443-520 49-126 (604)
454 smart00671 SEL1 Sel1-like repe 43.5 46 0.001 19.8 3.6 29 652-680 2-34 (36)
455 PF11846 DUF3366: Domain of un 43.0 52 0.0011 29.9 5.4 45 477-524 131-175 (193)
456 PF08238 Sel1: Sel1 repeat; I 42.9 50 0.0011 20.2 3.8 29 652-680 2-37 (39)
457 KOG2114 Vacuolar assembly/sort 42.4 5.6E+02 0.012 29.1 16.2 90 380-482 366-456 (933)
458 PF02184 HAT: HAT (Half-A-TPR) 41.8 64 0.0014 19.4 3.6 16 473-488 3-18 (32)
459 KOG1497 COP9 signalosome, subu 41.7 3.6E+02 0.0077 26.7 10.4 110 57-204 105-214 (399)
460 PF06957 COPI_C: Coatomer (COP 41.5 4.3E+02 0.0093 27.5 13.3 29 124-152 206-234 (422)
461 PF13226 DUF4034: Domain of un 41.2 3.5E+02 0.0075 26.3 11.1 116 500-632 7-150 (277)
462 cd02679 MIT_spastin MIT: domai 41.0 53 0.0011 24.7 4.0 35 472-523 4-38 (79)
463 PF08311 Mad3_BUB1_I: Mad3/BUB 40.0 2.2E+02 0.0048 23.7 12.8 83 436-520 40-126 (126)
464 KOG0292 Vesicle coat complex C 39.9 6.3E+02 0.014 28.9 17.3 103 550-654 994-1121(1202)
465 PF10037 MRP-S27: Mitochondria 38.8 4.8E+02 0.01 27.3 12.6 109 264-374 58-169 (429)
466 COG5187 RPN7 26S proteasome re 38.6 3.8E+02 0.0082 26.0 14.5 29 494-522 116-144 (412)
467 cd02677 MIT_SNX15 MIT: domain 38.6 39 0.00084 25.2 3.0 16 628-645 19-34 (75)
468 KOG4459 Membrane-associated pr 38.5 1.9E+02 0.0041 30.0 8.5 88 583-678 135-222 (471)
469 PF01239 PPTA: Protein prenylt 38.3 83 0.0018 18.3 4.4 26 637-662 3-28 (31)
470 cd02683 MIT_1 MIT: domain cont 38.3 74 0.0016 23.8 4.5 18 558-575 17-34 (77)
471 KOG2063 Vacuolar assembly/sort 37.5 7.1E+02 0.015 28.9 16.7 174 384-575 506-712 (877)
472 smart00299 CLH Clathrin heavy 37.1 2.5E+02 0.0055 23.6 14.1 46 434-481 19-64 (140)
473 PF04212 MIT: MIT (microtubule 34.5 97 0.0021 22.4 4.6 25 585-609 9-33 (69)
474 cd02684 MIT_2 MIT: domain cont 34.1 88 0.0019 23.3 4.3 19 505-523 18-36 (75)
475 KOG0889 Histone acetyltransfer 34.0 1.4E+03 0.03 31.3 27.0 134 547-682 2736-2885(3550)
476 cd02684 MIT_2 MIT: domain cont 33.8 92 0.002 23.2 4.4 17 559-575 18-34 (75)
477 PF07219 HemY_N: HemY protein 33.8 1.8E+02 0.004 23.4 6.6 47 308-356 61-107 (108)
478 KOG4151 Myosin assembly protei 33.5 1.2E+02 0.0026 33.6 6.8 108 500-623 60-169 (748)
479 KOG2063 Vacuolar assembly/sort 33.4 8.2E+02 0.018 28.4 18.4 89 434-522 603-713 (877)
480 COG3014 Uncharacterized protei 33.3 5.1E+02 0.011 25.9 13.0 37 547-583 213-249 (449)
481 PRK12798 chemotaxis protein; R 33.1 5.7E+02 0.012 26.5 23.2 221 281-519 89-321 (421)
482 PF06957 COPI_C: Coatomer (COP 33.1 3.2E+02 0.0068 28.5 9.4 27 309-335 207-233 (422)
483 PRK15490 Vi polysaccharide bio 32.0 2.5E+02 0.0054 30.6 8.7 80 558-641 19-98 (578)
484 KOG2561 Adaptor protein NUB1, 31.9 3.2E+02 0.007 28.2 8.9 27 583-609 269-295 (568)
485 KOG4521 Nuclear pore complex, 31.9 9.5E+02 0.021 28.6 14.1 174 271-452 919-1133(1480)
486 PF02064 MAS20: MAS20 protein 31.4 78 0.0017 26.2 3.9 29 655-683 67-95 (121)
487 KOG1920 IkappaB kinase complex 31.4 9.7E+02 0.021 28.6 24.0 83 463-574 958-1053(1265)
488 PF12921 ATP13: Mitochondrial 31.3 3.1E+02 0.0068 22.9 11.0 65 272-336 2-82 (126)
489 PRK15490 Vi polysaccharide bio 31.2 2.4E+02 0.0052 30.6 8.5 81 592-676 19-99 (578)
490 cd02678 MIT_VPS4 MIT: domain c 31.1 1.1E+02 0.0025 22.6 4.6 18 558-575 17-34 (75)
491 PF04097 Nic96: Nup93/Nic96; 30.9 7.8E+02 0.017 27.4 19.3 27 556-583 514-540 (613)
492 PF00244 14-3-3: 14-3-3 protei 30.9 4.7E+02 0.01 24.8 14.5 46 564-609 143-197 (236)
493 PF12753 Nro1: Nuclear pore co 30.4 61 0.0013 32.8 3.8 43 633-677 334-388 (404)
494 TIGR03362 VI_chp_7 type VI sec 30.3 5.5E+02 0.012 25.4 17.0 51 469-522 111-161 (301)
495 PRK10316 hypothetical protein; 30.1 84 0.0018 28.6 4.2 58 25-82 129-196 (209)
496 cd02656 MIT MIT: domain contai 29.8 82 0.0018 23.3 3.6 19 625-645 16-34 (75)
497 KOG4151 Myosin assembly protei 29.6 1E+02 0.0022 34.2 5.5 104 551-656 57-166 (748)
498 PF13226 DUF4034: Domain of un 28.9 5.1E+02 0.011 25.2 9.5 113 555-667 8-149 (277)
499 PHA02537 M terminase endonucle 28.5 70 0.0015 29.9 3.6 20 560-579 191-210 (230)
500 KOG1497 COP9 signalosome, subu 28.4 5.9E+02 0.013 25.2 16.4 92 547-640 103-208 (399)
No 1
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-54 Score=434.09 Aligned_cols=673 Identities=42% Similarity=0.604 Sum_probs=582.3
Q ss_pred hhcccCcccchhhhhcccCCcCHHHHHHHhhhccCCCHHHHHHHHHHHHhhcCCHHHHHhhhccCCcchhhhhccccchh
Q 005499 17 ELCVNGACMKAAEVEAKLDEGNIQEAESSLREGLSLNFEEARALLGRLEYQRGNVEGALRVFDGIDLHAAIQRLQPSFSE 96 (693)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 96 (693)
-.+-++++.........++.+.+.+|+..+++.++.+..++...+|..-+++|+.+.|+.+|+++............+..
T Consensus 64 ~~~~s~i~~~~~~~~~~~~~~~l~Ea~~il~~glsle~ee~~~~s~~~~~qr~~~e~al~vFe~~~i~~~~~~~e~~i~~ 143 (799)
T KOG4162|consen 64 NFSASGIDNQYSENLPLLDLRLLAEAEAILREGLSLEYEEARALSGRLEYQRGNDEAALRVFEGIDILAITYLQELEIVQ 143 (799)
T ss_pred HHHHhhcccccccccchhhhhhHHHHHHHHhhhcccchhhhhhhhhhHHHhhcCcHHHHHHhcccchhHHHHHHHHHHHh
Confidence 45566888888888999999999999999999999999999999999999999999999999998654443322111111
Q ss_pred hh-----hhhccCCCCCCCccchhhHHHHHHHHHHHHHHHhHhhCChHHHHHHHHHHHHHHHHhhhcCCCChhhhh-hHH
Q 005499 97 KS-----ASKKCRSRSDSHVSVSQHAASLVLEAIYLKAKSLQKLGRLTEAANECKSVLDAVERIFQQGIPDAQVDN-RLQ 170 (693)
Q Consensus 97 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~ 170 (693)
.. ....+..........+.+......++...++..+.+.|++.+|++.++.++++.+...+++.++..+.. .+.
T Consensus 144 ~s~~s~~~~s~~~~a~~p~~~~s~~~~~Le~~l~~lk~k~L~~~~~iqea~e~cr~~L~~ve~~~t~~~~~~~s~~~~l~ 223 (799)
T KOG4162|consen 144 NSNSSLRQRSKASFAIEPSTVMSAHGAILEAELIKLKAKSLKRLGRIQEAAEECRSVLDIVETKATQGSKDTESGALKLQ 223 (799)
T ss_pred ccCccccCCCccccccCCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHH
Confidence 10 000111111222444556666778888889999999999999999999999999999999999865444 889
Q ss_pred HHHHHHHhhhHHHHhhcCCchHHHHHHHHHhcccCCCChhHHHHHHHHHHHHhhhcccccCCCCCcCCCCCcccCCChhH
Q 005499 171 ETVSRAVELLPELWKQVGCDHDALAAYRRAVLSQWNLDNECCARIQKRFAVFLLHSGVEAGPPSLGSQVEGSYAPKNNLE 250 (693)
Q Consensus 171 ~~~~~a~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (693)
+++.++...++.+|...+..++++..|++++..+++.++.+...+...++.+..+++.+.. .....+...++++++.+
T Consensus 224 ~vl~~~~~~~~~Lw~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~ 301 (799)
T KOG4162|consen 224 EVLSRAVELLPILWKKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIE 301 (799)
T ss_pred HHHHHHHHHhHHHhcCCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHH
Confidence 9999999999999999999999999999999999999998888877777766655555422 22234456789999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHCCCcHHHHHHHH
Q 005499 251 EAILLLLILMKKYHLGKIKWDPAVMEHLTYALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDAALNLLR 330 (693)
Q Consensus 251 ~a~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 330 (693)
+++..+....++.......+++.+|+++.+++.++|+++.+.++||+++++.+...+.|+.++.++...|.-..|+.+++
T Consensus 302 d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~ 381 (799)
T KOG4162|consen 302 DAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLR 381 (799)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHH
Confidence 99999999988888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCChHHHhHHHH
Q 005499 331 KSLHKHERPNDLMALLLAAKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQS 410 (693)
Q Consensus 331 ~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~ 410 (693)
+......+|+++..+++.+++|.....+.+++++|..+++........++.+.++..+|.+|..+...+..+++|.....
T Consensus 382 ~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ 461 (799)
T KOG4162|consen 382 ESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHK 461 (799)
T ss_pred hhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHH
Confidence 99996666999999999999999999999999999999999776666778899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCChHHHHHH-----HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 005499 411 EALKSLDGASTFENNNADLFFDL-----EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALD 485 (693)
Q Consensus 411 ~A~~~~~~al~~~p~~~~~~~~l-----~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 485 (693)
++++.++++++.+|+|+.+.+++ .+++.+.|+.+.++++++++.+...+|..++.++...+++.+|+.+.+.++.
T Consensus 462 kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 462 KSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE 541 (799)
T ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999998 8999999999999999997766559999999999999999999999999999
Q ss_pred hcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcc--cc----------c-c--------------
Q 005499 486 ETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLR--CL----------S-Q-------------- 538 (693)
Q Consensus 486 ~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~--~~----------~-~-------------- 538 (693)
..| +|.........+....++.++|+.++...+..+...+.+-..+. .. . +
T Consensus 542 E~~--~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l 619 (799)
T KOG4162|consen 542 EFG--DNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL 619 (799)
T ss_pred Hhh--hhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHH
Confidence 999 88888888999999999999999999999998863332110000 00 0 0
Q ss_pred ----------------------hhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC
Q 005499 539 ----------------------IEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQ 596 (693)
Q Consensus 539 ----------------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 596 (693)
....+......|...+..+...+..++|..++.++-.+.|..+.+|+..|.++..+|+
T Consensus 620 ~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~ 699 (799)
T KOG4162|consen 620 VASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQ 699 (799)
T ss_pred HHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHh
Confidence 0011112356788999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 005499 597 THEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQA 676 (693)
Q Consensus 597 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 676 (693)
+++|.+.|..++.++|+++++...+|.++.+.|+..+.++..++..+++++|.++++|+.+|.++..+|+.++|.++|+.
T Consensus 700 ~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~a 779 (799)
T KOG4162|consen 700 LEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQA 779 (799)
T ss_pred hHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 99999999999999999999999999999999999833444499999999999999999999999999999999999999
Q ss_pred HHhcccCCCCCccccCC
Q 005499 677 ASMLEESDPIESFSSIA 693 (693)
Q Consensus 677 al~l~p~~~~~~~~~i~ 693 (693)
|+++++++|+.||++|+
T Consensus 780 a~qLe~S~PV~pFs~ip 796 (799)
T KOG4162|consen 780 ALQLEESNPVLPFSNIP 796 (799)
T ss_pred HHhhccCCCcccccccC
Confidence 99999999999999985
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-45 Score=357.18 Aligned_cols=434 Identities=17% Similarity=0.131 Sum_probs=392.2
Q ss_pred hHHHHhhcCCchHHHHHHHHHhcccCCCChhHHHHHHHHHHHHhhhcccccCCCCCcCCCCCcccCCChhHHHHHHHHHH
Q 005499 180 LPELWKQVGCDHDALAAYRRAVLSQWNLDNECCARIQKRFAVFLLHSGVEAGPPSLGSQVEGSYAPKNNLEEAILLLLIL 259 (693)
Q Consensus 180 l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 259 (693)
|+--.++.|++.+|.++-...-..++. ... ....+..+|+...+++....-
T Consensus 54 lah~~yq~gd~~~a~~h~nmv~~~d~t----~~~---------------------~llll~ai~~q~~r~d~s~a~---- 104 (966)
T KOG4626|consen 54 LAHRLYQGGDYKQAEKHCNMVGQEDPT----NTE---------------------RLLLLSAIFFQGSRLDKSSAG---- 104 (966)
T ss_pred HHHHHHhccCHHHHHHHHhHhhccCCC----ccc---------------------ceeeehhhhhcccchhhhhhh----
Confidence 344467889999998776555443221 000 011122345555555543321
Q ss_pred HHHHhhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCC
Q 005499 260 MKKYHLGKIKWDPAVMEHLTYALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERP 339 (693)
Q Consensus 260 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p 339 (693)
....++..|.-.+.|..+++++-..|+++.|+..++.+++..|+..+.|.++|.++...|+.+.|..+|.++++ .+|
T Consensus 105 -~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP 181 (966)
T KOG4626|consen 105 -SLLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNP 181 (966)
T ss_pred -hhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCc
Confidence 12344566788899999999999999999999999999999999999999999999999999999999999999 679
Q ss_pred CCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHH
Q 005499 340 NDLMALLLAAKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGA 419 (693)
Q Consensus 340 ~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 419 (693)
+...+..-+|.+.-..|+.. +|...+.+++...| .. +.+|..||.++..+|+. ..|+..|++|
T Consensus 182 ~l~ca~s~lgnLlka~Grl~-ea~~cYlkAi~~qp---~f--AiawsnLg~~f~~~Gei-----------~~aiq~y~eA 244 (966)
T KOG4626|consen 182 DLYCARSDLGNLLKAEGRLE-EAKACYLKAIETQP---CF--AIAWSNLGCVFNAQGEI-----------WLAIQHYEEA 244 (966)
T ss_pred chhhhhcchhHHHHhhcccc-hhHHHHHHHHhhCC---ce--eeeehhcchHHhhcchH-----------HHHHHHHHHh
Confidence 99999999998888899988 99999999999888 55 99999999999999999 9999999999
Q ss_pred HhcCCCChHHHHHH-----HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchH
Q 005499 420 STFENNNADLFFDL-----EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGP 494 (693)
Q Consensus 420 l~~~p~~~~~~~~l-----~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 494 (693)
++++|+..+++.++ ..+.+++|+.+|.+++.+.|++. .++-++|.+|..+|..+-|+..|+++++..| ..+.
T Consensus 245 vkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A-~a~gNla~iYyeqG~ldlAI~~Ykral~~~P--~F~~ 321 (966)
T KOG4626|consen 245 VKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHA-VAHGNLACIYYEQGLLDLAIDTYKRALELQP--NFPD 321 (966)
T ss_pred hcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcch-hhccceEEEEeccccHHHHHHHHHHHHhcCC--CchH
Confidence 99999999999999 88999999999999999999999 9999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 005499 495 ILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKAR 574 (693)
Q Consensus 495 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 574 (693)
++.+++..+-..|+..+|..+|.+++...|.+ +.+.++||.+|..+|.+++|..+|.+++
T Consensus 322 Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~h--------------------adam~NLgni~~E~~~~e~A~~ly~~al 381 (966)
T KOG4626|consen 322 AYNNLANALKDKGSVTEAVDCYNKALRLCPNH--------------------ADAMNNLGNIYREQGKIEEATRLYLKAL 381 (966)
T ss_pred HHhHHHHHHHhccchHHHHHHHHHHHHhCCcc--------------------HHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 99999999999999999999999999998544 7999999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHH
Q 005499 575 ELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAW 654 (693)
Q Consensus 575 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~ 654 (693)
...|+.+.++.++|.+|..+|++++|+.+|++++++.|...+++.++|.+|..+|+.+ .|+.+|.+++.++|...+++
T Consensus 382 ~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~--~A~q~y~rAI~~nPt~AeAh 459 (966)
T KOG4626|consen 382 EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVS--AAIQCYTRAIQINPTFAEAH 459 (966)
T ss_pred hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHH--HHHHHHHHHHhcCcHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcccCCCCC
Q 005499 655 YYLGLVHKDDGRIADAADCFQAASMLEESDPIE 687 (693)
Q Consensus 655 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 687 (693)
.+||.+|...|+..+|+..|+.|+.+.|+.|.+
T Consensus 460 sNLasi~kDsGni~~AI~sY~~aLklkPDfpdA 492 (966)
T KOG4626|consen 460 SNLASIYKDSGNIPEAIQSYRTALKLKPDFPDA 492 (966)
T ss_pred hhHHHHhhccCCcHHHHHHHHHHHccCCCCchh
Confidence 999999999999999999999999999999864
No 3
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.6e-42 Score=403.41 Aligned_cols=604 Identities=17% Similarity=0.108 Sum_probs=395.9
Q ss_pred ccchhcccCcccchhhhhcccCCcCHHHHHHHhhhcc--CCCHHHHHHHHHHHHhhcCCHHHHHhhhccCCcchh-hhhc
Q 005499 14 SARELCVNGACMKAAEVEAKLDEGNIQEAESSLREGL--SLNFEEARALLGRLEYQRGNVEGALRVFDGIDLHAA-IQRL 90 (693)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l--~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~~~~~~~-~~~~ 90 (693)
++.+..|+.+......|..++..|++++|...|++++ .|+...+++.+|.+++.+|++++|+.+|+++..... .+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 331 (899)
T TIGR02917 252 ALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQA 331 (899)
T ss_pred HHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 5567788888888899999999999999999999998 666678888999999999999999999988632110 0000
Q ss_pred cccchhhhhhhccCCCCCCCccchhhHH---HHHHHHHHHHHHHhHhhCChHHHHHHHHHHHHHHHHhhhcCCCChhhhh
Q 005499 91 QPSFSEKSASKKCRSRSDSHVSVSQHAA---SLVLEAIYLKAKSLQKLGRLTEAANECKSVLDAVERIFQQGIPDAQVDN 167 (693)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 167 (693)
...++.. ....+ ..++......... ......++.+|.++.+.|++++|.+.|++++... |...
T Consensus 332 ~~~la~~-~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~--- 397 (899)
T TIGR02917 332 RRLLASI-QLRLG--RVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD--------PENA--- 397 (899)
T ss_pred HHHHHHH-HHHCC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CCCH---
Confidence 0000000 00000 0000000000000 0013466777888888888888888888776521 2221
Q ss_pred hHHHHHHHHHhhhHHHHhhcCCchHHHHHHHHHhcccCCCChhHHHHHH-------HHHHHHhhhcccc--cCCCCCcCC
Q 005499 168 RLQETVSRAVELLPELWKQVGCDHDALAAYRRAVLSQWNLDNECCARIQ-------KRFAVFLLHSGVE--AGPPSLGSQ 238 (693)
Q Consensus 168 ~~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~-------~~~a~~l~~~~~~--~~~~~~~~~ 238 (693)
.++..++.++...|++++|+..|++++...+.........+. ..-+...+..... ...+.....
T Consensus 398 -------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 470 (899)
T TIGR02917 398 -------AARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNL 470 (899)
T ss_pred -------HHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 144456677888888888888888887764322111110000 0000000000000 001111122
Q ss_pred CCCcccCCChhHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHH
Q 005499 239 VEGSYAPKNNLEEAILLLLILMKKYHLGKIKWDPAVMEHLTYALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSA 318 (693)
Q Consensus 239 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~ 318 (693)
++..+...|++++|+..+... +...|.++.++..++..+...|+++.|.+.|++++...|.+...+..++.++..
T Consensus 471 l~~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 545 (899)
T TIGR02917 471 LGAIYLGKGDLAKAREAFEKA-----LSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLR 545 (899)
T ss_pred HHHHHHhCCCHHHHHHHHHHH-----HhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 334455556666665555322 233455555556666666666666666666666665555566666666666666
Q ss_pred CCCcHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcc
Q 005499 319 IGQNDAALNLLRKSLHKHERPNDLMALLLAAKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKV 398 (693)
Q Consensus 319 ~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~ 398 (693)
.|++++|+..+++++. .+|.+...+..++.++...+++. +|+..+++++...| .. ...+..+|.++...|++
T Consensus 546 ~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~~~---~~--~~~~~~l~~~~~~~~~~ 617 (899)
T TIGR02917 546 TGNEEEAVAWLEKAAE--LNPQEIEPALALAQYYLGKGQLK-KALAILNEAADAAP---DS--PEAWLMLGRAQLAAGDL 617 (899)
T ss_pred cCCHHHHHHHHHHHHH--hCccchhHHHHHHHHHHHCCCHH-HHHHHHHHHHHcCC---CC--HHHHHHHHHHHHHcCCH
Confidence 6666666666666655 33555555555666665555555 66666666655444 22 45566666666666666
Q ss_pred cCChHHHhHHHHHHHHHHHHHHhcCCCChHHHHHH-----HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCh
Q 005499 399 SSSDYERSRLQSEALKSLDGASTFENNNADLFFDL-----EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRF 473 (693)
Q Consensus 399 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-----~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~ 473 (693)
++|+..|++++..+|.++.++..+ ..|++++|+..++++++.+|++. .++..++.++...|++
T Consensus 618 -----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~ 685 (899)
T TIGR02917 618 -----------NKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNT-EAQIGLAQLLLAAKRT 685 (899)
T ss_pred -----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCCH
Confidence 666666666666666666555544 56666666666666666666665 6666666666666666
Q ss_pred HHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHH
Q 005499 474 SEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGL 553 (693)
Q Consensus 474 ~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 553 (693)
++|+..++.+....| .....+..+|.++...|++++|+..|++++...| .. ..+..+
T Consensus 686 ~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--------------------~~-~~~~~l 742 (899)
T TIGR02917 686 ESAKKIAKSLQKQHP--KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP--------------------SS-QNAIKL 742 (899)
T ss_pred HHHHHHHHHHHhhCc--CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--------------------Cc-hHHHHH
Confidence 666666666666666 5566666666666666666666666666666543 22 567788
Q ss_pred HHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCh
Q 005499 554 ANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKAL 633 (693)
Q Consensus 554 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l 633 (693)
+.++...|++++|...+++++...|+++.+++.+|.++...|++++|+..|++++..+|+++.++..++.++...|+ .
T Consensus 743 ~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~- 820 (899)
T TIGR02917 743 HRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-P- 820 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-H-
Confidence 88899999999999999999998999999999999999999999999999999999999988899999999999888 7
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCCcc
Q 005499 634 PVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASMLEESDPIESF 689 (693)
Q Consensus 634 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 689 (693)
+|+.++++++...|+++..+..+|.++...|++++|+.+|+++++.+|.++.+.+
T Consensus 821 -~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 875 (899)
T TIGR02917 821 -RALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRY 875 (899)
T ss_pred -HHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Confidence 8999999999999999999999999999999999999999999999888776543
No 4
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=6.6e-44 Score=347.93 Aligned_cols=469 Identities=17% Similarity=0.123 Sum_probs=413.8
Q ss_pred CCHHHHHHHHHHHHhhcCCHHHHHhhhccCCcchhhhhccccchhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHH
Q 005499 52 LNFEEARALLGRLEYQRGNVEGALRVFDGIDLHAAIQRLQPSFSEKSASKKCRSRSDSHVSVSQHAASLVLEAIYLKAKS 131 (693)
Q Consensus 52 ~~~~~a~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 131 (693)
+...+...-|+.-.|+.|+|++|.++.+.+-..+...+. .....+..
T Consensus 45 ~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~---------------------------------~llll~ai 91 (966)
T KOG4626|consen 45 HEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTE---------------------------------RLLLLSAI 91 (966)
T ss_pred CccchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCccc---------------------------------ceeeehhh
Confidence 444556788899999999999999998876433211111 12333455
Q ss_pred hHhhCChHHHHHHHHHHHHHHHHhhhcCCCChhhhhhHHHHHHHHHhhhHHHHhhcCCchHHHHHHHHHhcccCCCChhH
Q 005499 132 LQKLGRLTEAANECKSVLDAVERIFQQGIPDAQVDNRLQETVSRAVELLPELWKQVGCDHDALAAYRRAVLSQWNLDNEC 211 (693)
Q Consensus 132 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 211 (693)
+++..+++.....-...+.. ......++..++.+|...|++++|+..|+.+++..
T Consensus 92 ~~q~~r~d~s~a~~~~a~r~------------------~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~------- 146 (966)
T KOG4626|consen 92 FFQGSRLDKSSAGSLLAIRK------------------NPQGAEAYSNLANILKERGQLQDALALYRAAIELK------- 146 (966)
T ss_pred hhcccchhhhhhhhhhhhhc------------------cchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-------
Confidence 66666777665443222221 12344578888999999999999999999998852
Q ss_pred HHHHHHHHHHHhhhcccccCCCCCcCCCCCcccCCChhHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHhcCCHHHH
Q 005499 212 CARIQKRFAVFLLHSGVEAGPPSLGSQVEGSYAPKNNLEEAILLLLILMKKYHLGKIKWDPAVMEHLTYALSLCSQTSIL 291 (693)
Q Consensus 212 ~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 291 (693)
|+..+.|..++.++...|+.+.|
T Consensus 147 ---------------------------------------------------------p~fida~inla~al~~~~~~~~a 169 (966)
T KOG4626|consen 147 ---------------------------------------------------------PKFIDAYINLAAALVTQGDLELA 169 (966)
T ss_pred ---------------------------------------------------------chhhHHHhhHHHHHHhcCCCccc
Confidence 44556788899999999999999
Q ss_pred HHHHHhhcCCCCCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 005499 292 AKQLEEIMPGVFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLAAKICSEDCHLAAEGIQYARTALS 371 (693)
Q Consensus 292 ~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~ 371 (693)
.++|..+++.+|....+...+|..+-..|+..+|..+|.+++. .+|....+|..+|.+.-.+|+.. .|+..|+++++
T Consensus 170 ~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~--~qp~fAiawsnLg~~f~~~Gei~-~aiq~y~eAvk 246 (966)
T KOG4626|consen 170 VQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIE--TQPCFAIAWSNLGCVFNAQGEIW-LAIQHYEEAVK 246 (966)
T ss_pred HHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHh--hCCceeeeehhcchHHhhcchHH-HHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999 57999999999999988899888 99999999999
Q ss_pred hhcCCCcchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChHHHHHH-----HhCCHHHHHHHHH
Q 005499 372 NAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNADLFFDL-----EQRNLSTALRYAK 446 (693)
Q Consensus 372 ~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-----~~~~~~~A~~~~~ 446 (693)
+.| .. ..+|..||.+|...+.+ ++|+.+|.+|+.+.|++..++.++ .+|..+-|+..|+
T Consensus 247 ldP---~f--~dAYiNLGnV~ke~~~~-----------d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Yk 310 (966)
T KOG4626|consen 247 LDP---NF--LDAYINLGNVYKEARIF-----------DRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYK 310 (966)
T ss_pred CCC---cc--hHHHhhHHHHHHHHhcc-----------hHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHH
Confidence 999 66 99999999999999999 999999999999999999999998 9999999999999
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhh
Q 005499 447 QYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQ 526 (693)
Q Consensus 447 ~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 526 (693)
+++++.|+.+ +++.++|..+...|+..+|..+|++++...| ..+++..++|.++..+|.+++|...|.++++.+|..
T Consensus 311 ral~~~P~F~-~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p--~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~ 387 (966)
T KOG4626|consen 311 RALELQPNFP-DAYNNLANALKDKGSVTEAVDCYNKALRLCP--NHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEF 387 (966)
T ss_pred HHHhcCCCch-HHHhHHHHHHHhccchHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhh
Confidence 9999999999 9999999999999999999999999999999 899999999999999999999999999999998555
Q ss_pred hhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHH
Q 005499 527 RKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYIN 606 (693)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 606 (693)
+.++.+||.+|.++|++++|+.+|++++++.|..++++.++|..|..+|+.+.|+++|.+
T Consensus 388 --------------------aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~r 447 (966)
T KOG4626|consen 388 --------------------AAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTR 447 (966)
T ss_pred --------------------hhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 005499 607 ALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASM 679 (693)
Q Consensus 607 al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 679 (693)
++.++|...+++.+||.+|...|+.. +|+..|++++++.|+.++++.++..++.--.++.+=-..+++..+
T Consensus 448 AI~~nPt~AeAhsNLasi~kDsGni~--~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~s 518 (966)
T KOG4626|consen 448 AIQINPTFAEAHSNLASIYKDSGNIP--EAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLVS 518 (966)
T ss_pred HHhcCcHHHHHHhhHHHHhhccCCcH--HHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHHHHH
Confidence 99999999999999999999999999 999999999999999999999999988877666554444444433
No 5
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.8e-42 Score=402.94 Aligned_cols=576 Identities=15% Similarity=0.060 Sum_probs=313.9
Q ss_pred ccchhcccCcccchhhhhcccCCcCHHHHHHHhhhcc--CCCHHHHHHHHHHHHhhcCCHHHHHhhhccCCcchhhhhcc
Q 005499 14 SARELCVNGACMKAAEVEAKLDEGNIQEAESSLREGL--SLNFEEARALLGRLEYQRGNVEGALRVFDGIDLHAAIQRLQ 91 (693)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l--~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 91 (693)
++.+++|+.+.++...|..++..|++++|+..+++++ +|++..++..+|.+++.+|++++|+..|+++.... |...
T Consensus 150 ~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~--p~~~ 227 (899)
T TIGR02917 150 QALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALR--PNNP 227 (899)
T ss_pred HHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCCH
Confidence 4557888888888889999999999999998888887 67778888888999999999999999888763211 1100
Q ss_pred ccchhhhhhhccCCCCCCCccchhhHHH---HHHHHHHHHHHHhHhhCChHHHHHHHHHHHHHHHHhhhcCCCChhhhhh
Q 005499 92 PSFSEKSASKKCRSRSDSHVSVSQHAAS---LVLEAIYLKAKSLQKLGRLTEAANECKSVLDAVERIFQQGIPDAQVDNR 168 (693)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 168 (693)
..+..........+..+++......... ....+.+.+|.+++..|++++|+..|++++... |...
T Consensus 228 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--------~~~~---- 295 (899)
T TIGR02917 228 AVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSA--------PEYL---- 295 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCch----
Confidence 0000000000000000000000000000 001234445555555555555555555554421 1111
Q ss_pred HHHHHHHHHhhhHHHHhhcCCchHHHHHHHHHhcccCCCChhHHHHHHHHHHHHhhhcccccCCCCCcCCCCCcccCCCh
Q 005499 169 LQETVSRAVELLPELWKQVGCDHDALAAYRRAVLSQWNLDNECCARIQKRFAVFLLHSGVEAGPPSLGSQVEGSYAPKNN 248 (693)
Q Consensus 169 ~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (693)
.++..++.++...|++++|+..|++++...+. .... .. .+...+...|+
T Consensus 296 ------~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~---~~--------------------~la~~~~~~g~ 344 (899)
T TIGR02917 296 ------PALLLAGASEYQLGNLEQAYQYLNQILKYAPN--SHQA---RR--------------------LLASIQLRLGR 344 (899)
T ss_pred ------hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHH---HH--------------------HHHHHHHHCCC
Confidence 12333455566666666666666666654321 1100 00 11123344555
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHCCCcHHHHHH
Q 005499 249 LEEAILLLLILMKKYHLGKIKWDPAVMEHLTYALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDAALNL 328 (693)
Q Consensus 249 ~~~a~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 328 (693)
+++|+..+.. .+...|.++.++..++.++...|+++.|.+.|++++...|++...|+.+|.++...|++++|+..
T Consensus 345 ~~~A~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 419 (899)
T TIGR02917 345 VDEAIATLSP-----ALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIAD 419 (899)
T ss_pred HHHHHHHHHH-----HHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHH
Confidence 6666555422 23344555566666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCChHHHhHH
Q 005499 329 LRKSLHKHERPNDLMALLLAAKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRL 408 (693)
Q Consensus 329 ~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~ 408 (693)
+++++. .+|+.......++..+...+++. +|+..+++.+...| .. +..+..+|.++...|++
T Consensus 420 ~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~~~---~~--~~~~~~l~~~~~~~~~~---------- 481 (899)
T TIGR02917 420 LETAAQ--LDPELGRADLLLILSYLRSGQFD-KALAAAKKLEKKQP---DN--ASLHNLLGAIYLGKGDL---------- 481 (899)
T ss_pred HHHHHh--hCCcchhhHHHHHHHHHhcCCHH-HHHHHHHHHHHhCC---CC--cHHHHHHHHHHHhCCCH----------
Confidence 666665 33555555555555555555555 66666666555444 22 44555666666666666
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHH-----HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005499 409 QSEALKSLDGASTFENNNADLFFDL-----EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAA 483 (693)
Q Consensus 409 ~~~A~~~~~~al~~~p~~~~~~~~l-----~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 483 (693)
++|+..|++++..+|++..++..+ ..|++++|+..+++++...|.+. .++..++.++...|++++|+..++++
T Consensus 482 -~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~ 559 (899)
T TIGR02917 482 -AKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNL-RAILALAGLYLRTGNEEEAVAWLEKA 559 (899)
T ss_pred -HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666666666666655555544 55666666666666666666655 56666666666666666666666666
Q ss_pred HhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCCh
Q 005499 484 LDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHW 563 (693)
Q Consensus 484 l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 563 (693)
+..+| .+...+..++.++...|++++|+..+++++...|.+ ..+|..+|.++...|++
T Consensus 560 ~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--------------------~~~~~~l~~~~~~~~~~ 617 (899)
T TIGR02917 560 AELNP--QEIEPALALAQYYLGKGQLKKALAILNEAADAAPDS--------------------PEAWLMLGRAQLAAGDL 617 (899)
T ss_pred HHhCc--cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC--------------------HHHHHHHHHHHHHcCCH
Confidence 66655 455555566666666666666666666655544322 34455555555555555
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 005499 564 KDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDA 643 (693)
Q Consensus 564 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~a 643 (693)
++|+.+|++++...|.++.++..+|.++...|++++|+..|++++..+|++..++..++.++...|+++ +|+..++.+
T Consensus 618 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~ 695 (899)
T TIGR02917 618 NKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTE--SAKKIAKSL 695 (899)
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHH
Confidence 555555555555555555555555555555555555555555555555554444444454444444444 444444444
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccC
Q 005499 644 LRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASMLEES 683 (693)
Q Consensus 644 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 683 (693)
.+..|.++.++..+|.++...|++++|+..|++++...|+
T Consensus 696 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 735 (899)
T TIGR02917 696 QKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS 735 (899)
T ss_pred HhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC
Confidence 4444444444444444444444444444444444444443
No 6
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.8e-39 Score=377.12 Aligned_cols=579 Identities=16% Similarity=0.052 Sum_probs=298.6
Q ss_pred ccchhcccCcccchhhhhcccCCcCHHHHHHHhhhcc--CCCHHHHH----------------HHHHHHHhhcCCHHHHH
Q 005499 14 SARELCVNGACMKAAEVEAKLDEGNIQEAESSLREGL--SLNFEEAR----------------ALLGRLEYQRGNVEGAL 75 (693)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l--~~~~~~a~----------------~~lg~~~~~~g~~~~A~ 75 (693)
|+..++|+++......++.++..|++++|...+++.+ .|++.+++ +.+|.++...|++++|+
T Consensus 53 kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~ 132 (1157)
T PRK11447 53 RLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEAL 132 (1157)
T ss_pred HHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHH
Confidence 4456677777777777777777777777777777766 45554432 34455666677777777
Q ss_pred hhhccCCcchhhhhccccchhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHhHhhCChHHHHHHHHHHHHHHHHh
Q 005499 76 RVFDGIDLHAAIQRLQPSFSEKSASKKCRSRSDSHVSVSQHAASLVLEAIYLKAKSLQKLGRLTEAANECKSVLDAVERI 155 (693)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~ 155 (693)
..|+++.... +.. . . -+......+....|+.++|++.|++++...
T Consensus 133 ~~~~~~l~~~--p~~------------------------~---~---la~~y~~~~~~~~g~~~~A~~~L~~ll~~~--- 177 (1157)
T PRK11447 133 ASYDKLFNGA--PPE------------------------L---D---LAVEYWRLVAKLPAQRPEAINQLQRLNADY--- 177 (1157)
T ss_pred HHHHHHccCC--CCC------------------------h---H---HHHHHHHHHhhCCccHHHHHHHHHHHHHhC---
Confidence 7776653221 000 0 0 001111222234578888888888776632
Q ss_pred hhcCCCChhhhhhHHHHHHHHHhhhHHHHhhcCCchHHHHHHHHHhcccCCCChhHHHHHHHHHHHHhhhcccccCCCCC
Q 005499 156 FQQGIPDAQVDNRLQETVSRAVELLPELWKQVGCDHDALAAYRRAVLSQWNLDNECCARIQKRFAVFLLHSGVEAGPPSL 235 (693)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~ 235 (693)
|... .+...++.++...|++++|+..|++++.... .......+ ....+ ... ...+..
T Consensus 178 -----P~~~----------~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~--~~~~aa~~---~~~~l-~~~--~~~~~~ 234 (1157)
T PRK11447 178 -----PGNT----------GLRNTLALLLFSSGRRDEGFAVLEQMAKSPA--GRDAAAQL---WYGQI-KDM--PVSDAS 234 (1157)
T ss_pred -----CCCH----------HHHHHHHHHHHccCCHHHHHHHHHHHhhCCC--chHHHHHH---HHHHH-hcc--CCChhh
Confidence 3322 1445677888999999999999999876421 10000000 00000 000 000000
Q ss_pred cC---CCCCcccCCChhHHHHHHHHHHHHHHhhcCCCCcHH-HHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCcHHHHHH
Q 005499 236 GS---QVEGSYAPKNNLEEAILLLLILMKKYHLGKIKWDPA-VMEHLTYALSLCSQTSILAKQLEEIMPGVFLRSDRWNA 311 (693)
Q Consensus 236 ~~---~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~ 311 (693)
.. .....+-.....++|...+.... . .+.++. .....|..+...|+++.|+..|+++++..|++..+++.
T Consensus 235 ~~~l~~~l~~~p~~~~~~~A~~~L~~~~-----~-~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~ 308 (1157)
T PRK11447 235 VAALQKYLQVFSDGDSVAAARSQLAEQQ-----K-QLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGA 308 (1157)
T ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHHH-----H-hccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 00 00000111112333333332110 0 011222 22345667777777777777777777777777777777
Q ss_pred HHHHHHHCCCcHHHHHHHHHHhhccCCCCCHH--------------HHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCC
Q 005499 312 LALCYSAIGQNDAALNLLRKSLHKHERPNDLM--------------ALLLAAKICSEDCHLAAEGIQYARTALSNAQGKD 377 (693)
Q Consensus 312 la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~--------------~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~ 377 (693)
+|.++.+.|++++|+..|+++++ .+|++.. .....+.++...+++. +|+..+++++...|
T Consensus 309 Lg~~~~~~g~~~eA~~~l~~Al~--~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~-eA~~~~~~Al~~~P--- 382 (1157)
T PRK11447 309 LGQAYSQQGDRARAVAQFEKALA--LDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLA-QAERLYQQARQVDN--- 382 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHhCC---
Confidence 77777777777777777777777 3465432 1122355566666666 77777777777766
Q ss_pred cchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChHHHHHH----HhCCHHHHHHHHHHHHHhcC
Q 005499 378 EHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNADLFFDL----EQRNLSTALRYAKQYIDATG 453 (693)
Q Consensus 378 ~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l----~~~~~~~A~~~~~~al~~~p 453 (693)
.. ..++..+|.++...|++ ++|+..|+++++.+|++..++..+ ..+++++|+.+++++....+
T Consensus 383 ~~--~~a~~~Lg~~~~~~g~~-----------~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~ 449 (1157)
T PRK11447 383 TD--SYAVLGLGDVAMARKDY-----------AAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQR 449 (1157)
T ss_pred CC--HHHHHHHHHHHHHCCCH-----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHH
Confidence 33 56677777777777777 777777777777777776655444 33444555554443322111
Q ss_pred CC---------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q 005499 454 GS---------VLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQ 524 (693)
Q Consensus 454 ~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 524 (693)
.. . ..+..+|.++...|++++|+..|+++++.+| +++.+++.++.++...|++++|+..++++++..|
T Consensus 450 ~~~~~~~~~l~~-~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P--~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P 526 (1157)
T PRK11447 450 RSIDDIERSLQN-DRLAQQAEALENQGKWAQAAELQRQRLALDP--GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP 526 (1157)
T ss_pred HHHHHHHHHhhh-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 10 1 2233445555555555555555555555555 4555555555555555555555555555555544
Q ss_pred hhhhhcCCccccc-------------chh--hhcc---------cHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCC
Q 005499 525 AQRKSFGPLRCLS-------------QIE--DDKV---------NEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYS 580 (693)
Q Consensus 525 ~~~~~~~~~~~~~-------------~~~--~~~~---------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 580 (693)
.++.......... ..+ .... ........++..+...|++++|+.+++ ..|.+
T Consensus 527 ~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~----~~p~~ 602 (1157)
T PRK11447 527 NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR----QQPPS 602 (1157)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH----hCCCC
Confidence 4433211000000 000 0000 001112233444444444444444433 24444
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 005499 581 AEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLV 660 (693)
Q Consensus 581 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~ 660 (693)
+..+..+|.++...|++++|+..|+++++.+|+++.++..++.++...|+++ +|++.++++++..|+++.++..+|.+
T Consensus 603 ~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~--eA~~~l~~ll~~~p~~~~~~~~la~~ 680 (1157)
T PRK11447 603 TRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLA--AARAQLAKLPATANDSLNTQRRVALA 680 (1157)
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHhccCCCChHHHHHHHHH
Confidence 4455555555555555555555555555555555555555555555555544 55555555555555555555555555
Q ss_pred HHHcCChHHHHHHHHHHHhcccCC
Q 005499 661 HKDDGRIADAADCFQAASMLEESD 684 (693)
Q Consensus 661 ~~~~g~~~~A~~~~~~al~l~p~~ 684 (693)
+...|++++|+++|++++...|++
T Consensus 681 ~~~~g~~~eA~~~~~~al~~~~~~ 704 (1157)
T PRK11447 681 WAALGDTAAAQRTFNRLIPQAKSQ 704 (1157)
T ss_pred HHhCCCHHHHHHHHHHHhhhCccC
Confidence 555555555555555555444433
No 7
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.2e-36 Score=351.48 Aligned_cols=586 Identities=12% Similarity=0.026 Sum_probs=435.9
Q ss_pred ccchhcccCccc----------------chhhhhcccCCcCHHHHHHHhhhcc--CCCHH-HHHHHHHHHHhhcCCHHHH
Q 005499 14 SARELCVNGACM----------------KAAEVEAKLDEGNIQEAESSLREGL--SLNFE-EARALLGRLEYQRGNVEGA 74 (693)
Q Consensus 14 ~~~~~~~~~~~~----------------~~~~~~~~~~~g~~~~A~~~~~~~l--~~~~~-~a~~~lg~~~~~~g~~~~A 74 (693)
+.++++|+...+ .+..|+.++..|++++|+..|++++ .|.+. -+..++..+....|++++|
T Consensus 87 ~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A 166 (1157)
T PRK11447 87 RLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEA 166 (1157)
T ss_pred HHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHH
Confidence 455778877654 3778889999999999999999999 34333 2333445555567999999
Q ss_pred HhhhccCCcchhhhhccccchhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHhHhhCChHHHHHHHHHHHHHHHH
Q 005499 75 LRVFDGIDLHAAIQRLQPSFSEKSASKKCRSRSDSHVSVSQHAASLVLEAIYLKAKSLQKLGRLTEAANECKSVLDAVER 154 (693)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~ 154 (693)
+..|+++.... |. ..++.+.+|.++...|++++|++.|++++...
T Consensus 167 ~~~L~~ll~~~--P~-------------------------------~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~-- 211 (1157)
T PRK11447 167 INQLQRLNADY--PG-------------------------------NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSP-- 211 (1157)
T ss_pred HHHHHHHHHhC--CC-------------------------------CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC--
Confidence 99999863221 11 02567889999999999999999999886521
Q ss_pred hhhcCCCChhhhhhHHHHHHHHHhhhHHHHhhcCCchHHHHHHHHHhcccCCCChhHHHHHHHHHHHHhhhcccccCCCC
Q 005499 155 IFQQGIPDAQVDNRLQETVSRAVELLPELWKQVGCDHDALAAYRRAVLSQWNLDNECCARIQKRFAVFLLHSGVEAGPPS 234 (693)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~ 234 (693)
+... ....... ......+....++..+...+...+ +..........+.... .....|.
T Consensus 212 ------~~~~---~aa~~~~-------~~l~~~~~~~~~~~~l~~~l~~~p--~~~~~~~A~~~L~~~~----~~~~dp~ 269 (1157)
T PRK11447 212 ------AGRD---AAAQLWY-------GQIKDMPVSDASVAALQKYLQVFS--DGDSVAAARSQLAEQQ----KQLADPA 269 (1157)
T ss_pred ------CchH---HHHHHHH-------HHHhccCCChhhHHHHHHHHHHCC--CchHHHHHHHHHHHHH----HhccCcc
Confidence 0000 0000000 011123444555555555554322 1111110001111100 0000111
Q ss_pred Cc-CCCCCcccCCChhHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCcHH--H---
Q 005499 235 LG-SQVEGSYAPKNNLEEAILLLLILMKKYHLGKIKWDPAVMEHLTYALSLCSQTSILAKQLEEIMPGVFLRSD--R--- 308 (693)
Q Consensus 235 ~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~e~~l~~~~~~~~--~--- 308 (693)
.. ...+..+...|++++|+..+. ..+...|.++.++..++.++.+.|++++|+..|+++++..|++.. .
T Consensus 270 ~~~~~~G~~~~~~g~~~~A~~~l~-----~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ 344 (1157)
T PRK11447 270 FRARAQGLAAVDSGQGGKAIPELQ-----QAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWES 344 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHH-----HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHH
Confidence 10 011334667899999998884 445567999999999999999999999999999999988776532 1
Q ss_pred ---------HHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCcc
Q 005499 309 ---------WNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLAAKICSEDCHLAAEGIQYARTALSNAQGKDEH 379 (693)
Q Consensus 309 ---------~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 379 (693)
...+|.++...|++++|+..|++++. .+|++..++..+|.++...+++. +|+..++++++..| ..
T Consensus 345 ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~--~~P~~~~a~~~Lg~~~~~~g~~~-eA~~~y~~aL~~~p---~~ 418 (1157)
T PRK11447 345 LLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQ--VDNTDSYAVLGLGDVAMARKDYA-AAERYYQQALRMDP---GN 418 (1157)
T ss_pred HHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHhCC---CC
Confidence 23458889999999999999999999 57999999999999999999998 99999999999888 44
Q ss_pred hhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCCh---------HHHHHH-----HhCCHHHHHHHH
Q 005499 380 LKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNA---------DLFFDL-----EQRNLSTALRYA 445 (693)
Q Consensus 380 ~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---------~~~~~l-----~~~~~~~A~~~~ 445 (693)
..++..++.++. .++. ++|+..+++.....+... ..+..+ ..|++++|+..|
T Consensus 419 --~~a~~~L~~l~~-~~~~-----------~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~ 484 (1157)
T PRK11447 419 --TNAVRGLANLYR-QQSP-----------EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQ 484 (1157)
T ss_pred --HHHHHHHHHHHH-hcCH-----------HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 667888888875 4567 888888775433222111 111111 789999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHh
Q 005499 446 KQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQA 525 (693)
Q Consensus 446 ~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 525 (693)
+++++.+|+++ .+++.+|.++...|++++|+..+++++...| .++..++.++..+...+++++|+..++++......
T Consensus 485 ~~Al~~~P~~~-~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P--~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~ 561 (1157)
T PRK11447 485 RQRLALDPGSV-WLTYRLAQDLRQAGQRSQADALMRRLAQQKP--NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWN 561 (1157)
T ss_pred HHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcC
Confidence 99999999998 9999999999999999999999999999999 88999999999999999999999988875321100
Q ss_pred h-----------hhhc---------CCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHH
Q 005499 526 Q-----------RKSF---------GPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLH 585 (693)
Q Consensus 526 ~-----------~~~~---------~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 585 (693)
. ...+ +............|.++..+..+|.++...|++++|+..|+++++..|+++.++.
T Consensus 562 ~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~ 641 (1157)
T PRK11447 562 SNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARL 641 (1157)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 0 0000 0000000122345677788999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCH------HHHHHHHH
Q 005499 586 TEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNR------KAWYYLGL 659 (693)
Q Consensus 586 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~------~~~~~lg~ 659 (693)
.++.++...|++++|+..+++++...|+++.++..+|.++...|+++ +|+..+++++...|+++ .++..+|.
T Consensus 642 ~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~--eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~ 719 (1157)
T PRK11447 642 GLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTA--AAQRTFNRLIPQAKSQPPSMESALVLRDAAR 719 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHH--HHHHHHHHHhhhCccCCcchhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 99999999999876543 45667899
Q ss_pred HHHHcCChHHHHHHHHHHHh---cccCCCC
Q 005499 660 VHKDDGRIADAADCFQAASM---LEESDPI 686 (693)
Q Consensus 660 ~~~~~g~~~~A~~~~~~al~---l~p~~~~ 686 (693)
++...|++++|+..|++|+. +.|..|.
T Consensus 720 ~~~~~G~~~~A~~~y~~Al~~~~~~~~~p~ 749 (1157)
T PRK11447 720 FEAQTGQPQQALETYKDAMVASGITPTRPQ 749 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHhhcCCCCCCCC
Confidence 99999999999999999986 4454443
No 8
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.2e-35 Score=300.62 Aligned_cols=607 Identities=15% Similarity=0.120 Sum_probs=393.0
Q ss_pred cCcccchhhhhcccCCcCHHHHHHHhhhcc--------CCCHHH--HHHHHHHHHhh-----------cCCHHHHHhhhc
Q 005499 21 NGACMKAAEVEAKLDEGNIQEAESSLREGL--------SLNFEE--ARALLGRLEYQ-----------RGNVEGALRVFD 79 (693)
Q Consensus 21 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l--------~~~~~~--a~~~lg~~~~~-----------~g~~~~A~~~~~ 79 (693)
.+-..++..+..|+.+|+.++.+..++.++ ++.... ++..||..+.. ..-+..|..+|+
T Consensus 39 a~le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~ 118 (1018)
T KOG2002|consen 39 APLEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFD 118 (1018)
T ss_pred CchhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhh
Confidence 345567889999999999999999999998 333333 33344433311 124566777787
Q ss_pred cCCcchhhhhccccchhhhhhhccCCCCCCCccchhhHH---HHHHHHHHHHHHHhHhhCChHHHHHHHHHHHHHHHHhh
Q 005499 80 GIDLHAAIQRLQPSFSEKSASKKCRSRSDSHVSVSQHAA---SLVLEAIYLKAKSLQKLGRLTEAANECKSVLDAVERIF 156 (693)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~ 156 (693)
.+..-..........-.-.....+....+++.......+ ...+-+++.+|...+..|+|-.|+.+|+.++.+.+
T Consensus 119 ~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp--- 195 (1018)
T KOG2002|consen 119 LADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINP--- 195 (1018)
T ss_pred HHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCc---
Confidence 653221111111000000000000000111111000000 11234566677899999999999999999888653
Q ss_pred hcCCCChhhhhhHHHHHHHHHhhhHHHHhhcCCchHHHHHHHHHhcccCCCChhHHHHHHHHHHHHhhhcccccCCCCCc
Q 005499 157 QQGIPDAQVDNRLQETVSRAVELLPELWKQVGCDHDALAAYRRAVLSQWNLDNECCARIQKRFAVFLLHSGVEAGPPSLG 236 (693)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~ 236 (693)
...++... ..+.|+.++|+.+.|+..|.++++. ||.+ ......++.+.+.
T Consensus 196 -~~~aD~rI-------------gig~Cf~kl~~~~~a~~a~~ralqL----dp~~-v~alv~L~~~~l~----------- 245 (1018)
T KOG2002|consen 196 -ACKADVRI-------------GIGHCFWKLGMSEKALLAFERALQL----DPTC-VSALVALGEVDLN----------- 245 (1018)
T ss_pred -ccCCCccc-------------hhhhHHHhccchhhHHHHHHHHHhc----Chhh-HHHHHHHHHHHHH-----------
Confidence 33344331 1256888999999999999999995 3322 2222333333211
Q ss_pred CCCCCcccCCChhHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCc---HHHHHHHH
Q 005499 237 SQVEGSYAPKNNLEEAILLLLILMKKYHLGKIKWDPAVMEHLTYALSLCSQTSILAKQLEEIMPGVFLR---SDRWNALA 313 (693)
Q Consensus 237 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~e~~l~~~~~~---~~~~~~la 313 (693)
+-....+..++.++... -...|.+|.+...|+.-++-.|+|+.+....+.++...... .+.+|++|
T Consensus 246 ------~~d~~s~~~~~~ll~~a-----y~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~g 314 (1018)
T KOG2002|consen 246 ------FNDSDSYKKGVQLLQRA-----YKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLG 314 (1018)
T ss_pred ------ccchHHHHHHHHHHHHH-----HhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 11113445555444222 23346677777777777777777777777777776554332 33477777
Q ss_pred HHHHHCCCcHHHHHHHHHHhhccCCCCC-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHH
Q 005499 314 LCYSAIGQNDAALNLLRKSLHKHERPND-LMALLLAAKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCL 392 (693)
Q Consensus 314 ~~~~~~g~~~~A~~~~~~~l~~~~~p~~-~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~ 392 (693)
.+|..+|+|++|...|.++++ .+|++ ..+++.+|.++...++.. .+...|++++...| +. ......||..|
T Consensus 315 Rs~Ha~Gd~ekA~~yY~~s~k--~~~d~~~l~~~GlgQm~i~~~dle-~s~~~fEkv~k~~p---~~--~etm~iLG~Ly 386 (1018)
T KOG2002|consen 315 RSYHAQGDFEKAFKYYMESLK--ADNDNFVLPLVGLGQMYIKRGDLE-ESKFCFEKVLKQLP---NN--YETMKILGCLY 386 (1018)
T ss_pred HHHHhhccHHHHHHHHHHHHc--cCCCCccccccchhHHHHHhchHH-HHHHHHHHHHHhCc---ch--HHHHHHHHhHH
Confidence 777777777777777777777 44665 666677777777777777 77777777777777 44 56667777777
Q ss_pred hhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChHHHHHH---------------------------------------
Q 005499 393 GRHAKVSSSDYERSRLQSEALKSLDGASTFENNNADLFFDL--------------------------------------- 433 (693)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l--------------------------------------- 433 (693)
...+.. ....+.|..++.+++...|.+.++|..+
T Consensus 387 a~~~~~-------~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNva 459 (1018)
T KOG2002|consen 387 AHSAKK-------QEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVA 459 (1018)
T ss_pred Hhhhhh-------hHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHH
Confidence 666411 1112667777777777777776666665
Q ss_pred ----HhCCHHHHHHHHHHHHHh-----cCCC---c-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHH
Q 005499 434 ----EQRNLSTALRYAKQYIDA-----TGGS---V-LKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKA 500 (693)
Q Consensus 434 ----~~~~~~~A~~~~~~al~~-----~p~~---~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 500 (693)
..|++..|...|..++.. +++. . ....+++|.++...++++.|.+.|..++..+| ...+++..+|
T Consensus 460 slhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp--~YId~ylRl~ 537 (1018)
T KOG2002|consen 460 SLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP--GYIDAYLRLG 537 (1018)
T ss_pred HHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc--hhHHHHHHhh
Confidence 445555555555555443 1111 0 01245555555555555555555555555555 4555555555
Q ss_pred HHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccc----------------hhhhcccHHHHHHHHHHHHHh-----
Q 005499 501 KLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQ----------------IEDDKVNEFQVWHGLANLYSG----- 559 (693)
Q Consensus 501 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~la~~~~~----- 559 (693)
.+....++..+|...++.++..+..+++.+...+.+.. .......++-+...||+++++
T Consensus 538 ~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~ 617 (1018)
T KOG2002|consen 538 CMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNP 617 (1018)
T ss_pred HHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccc
Confidence 45555555555555555555555555554433332111 111112446777888887764
Q ss_pred -------CCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCC
Q 005499 560 -------LSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKA 632 (693)
Q Consensus 560 -------~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 632 (693)
.+.+++|+++|.++++.+|.+..+-..+|.++...|++.+|+..|.++.+.-.++.++|.++|.||..+|+|.
T Consensus 618 ~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~ 697 (1018)
T KOG2002|consen 618 SRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYR 697 (1018)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999877788899999999999999999
Q ss_pred hHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCCccc
Q 005499 633 LPVARSLLSDALRIE--PTNRKAWYYLGLVHKDDGRIADAADCFQAASMLEESDPIESFS 690 (693)
Q Consensus 633 l~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 690 (693)
.|+++|+.+++.. .+++.++..||.++...|.+.+|.++..+|+.+.|.+|.+.|.
T Consensus 698 --~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN 755 (1018)
T KOG2002|consen 698 --LAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFN 755 (1018)
T ss_pred --HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhH
Confidence 9999999999854 4578999999999999999999999999999999999998875
No 9
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=2.1e-32 Score=303.12 Aligned_cols=576 Identities=12% Similarity=-0.034 Sum_probs=417.3
Q ss_pred CCCCccchhcccC-----cccchhhhhcccCCcCHHHHHHHhhhcc--CCCHHHHHHHHHHHHhhcCCHHHHHhhhccCC
Q 005499 10 DDGGSARELCVNG-----ACMKAAEVEAKLDEGNIQEAESSLREGL--SLNFEEARALLGRLEYQRGNVEGALRVFDGID 82 (693)
Q Consensus 10 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~A~~~~~~~l--~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~~~ 82 (693)
..|++|-|+.-|+ +..+..+|..+..+|++++|+..|++++ +|++..+++.|+.+|...|++++|+.+++++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv 105 (987)
T PRK09782 26 NIGTSAEELGLSDYRHFVIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQL 105 (987)
T ss_pred hcccccccCCCchHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3466777777665 4567889999999999999999999999 89999999999999999999999999999974
Q ss_pred cchhhhhccccchhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHhHhhCChHHHHHHHHHHHHHHHHhhhc----
Q 005499 83 LHAAIQRLQPSFSEKSASKKCRSRSDSHVSVSQHAASLVLEAIYLKAKSLQKLGRLTEAANECKSVLDAVERIFQQ---- 158 (693)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~---- 158 (693)
... |... ..+..+|.+ +++++|+..|++++...+.....
T Consensus 106 ~ld--P~n~-------------------------------~~~~~La~i----~~~~kA~~~ye~l~~~~P~n~~~~~~l 148 (987)
T PRK09782 106 KRH--PGDA-------------------------------RLERSLAAI----PVEVKSVTTVEELLAQQKACDAVPTLR 148 (987)
T ss_pred hcC--cccH-------------------------------HHHHHHHHh----ccChhHHHHHHHHHHhCCCChhHHHHH
Confidence 221 1110 111112222 77777777777665532111000
Q ss_pred CCC------C-hhhhhhHHHHH----------HHHHhhh-HHHHhhcCCchHHHHHHHHHhcccCCCChhHHHHHHHHHH
Q 005499 159 GIP------D-AQVDNRLQETV----------SRAVELL-PELWKQVGCDHDALAAYRRAVLSQWNLDNECCARIQKRFA 220 (693)
Q Consensus 159 ~~~------~-~~~~~~~~~~~----------~~a~~~l-~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~a 220 (693)
... . ..........+ ...+... ..+|.++|++++|+..++++++.++.. ... ...+.
T Consensus 149 a~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~-~~~----~~~L~ 223 (987)
T PRK09782 149 CRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLS-AAE----RRQWF 223 (987)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCC-HHH----HHHHH
Confidence 000 0 00000000001 0112222 578899999999999999999875422 111 12222
Q ss_pred HHhhhcccccCCCCCcCCCCCcccC-CChhHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 005499 221 VFLLHSGVEAGPPSLGSQVEGSYAP-KNNLEEAILLLLILMKKYHLGKIKWDPAVMEHLTYALSLCSQTSILAKQLEEIM 299 (693)
Q Consensus 221 ~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~e~~l 299 (693)
.. |.. .+. ++++.++. .. ...++.+...++..|...|+.+.|.+.+++.-
T Consensus 224 ~a--------------------y~q~l~~-~~a~al~~-----~~---lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~ 274 (987)
T PRK09782 224 DV--------------------LLAGQLD-DRLLALQS-----QG---IFTDPQSRITYATALAYRGEKARLQHYLIENK 274 (987)
T ss_pred HH--------------------HHHhhCH-HHHHHHhc-----hh---cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 22 222 133 55554421 12 22688899999999999999999999988764
Q ss_pred CCC---CCcHHHH-----------------------------HHHHHHHHHCCCcHHHHHH-------------------
Q 005499 300 PGV---FLRSDRW-----------------------------NALALCYSAIGQNDAALNL------------------- 328 (693)
Q Consensus 300 ~~~---~~~~~~~-----------------------------~~la~~~~~~g~~~~A~~~------------------- 328 (693)
... |.+.... ..++..+.+.++++-+..+
T Consensus 275 ~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 354 (987)
T PRK09782 275 PLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVA 354 (987)
T ss_pred ccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccc
Confidence 332 2222111 1223444455555544433
Q ss_pred ----------HHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcc
Q 005499 329 ----------LRKSLHKHERPNDLMALLLAAKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKV 398 (693)
Q Consensus 329 ----------~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~ 398 (693)
...+.+ ..|.+...+..++....+.|+.. +|...+++++...+. ..........++.+|..++..
T Consensus 355 ~~~~~~~~~~~~~~y~--~~~~~~~~l~q~~~~~~~~~~~~-~a~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~ 429 (987)
T PRK09782 355 TRNKAEALRLARLLYQ--QEPANLTRLDQLTWQLMQNGQSR-EAADLLLQRYPFQGD--ARLSQTLMARLASLLESHPYL 429 (987)
T ss_pred cCchhHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcccHH-HHHHHHHHhcCCCcc--cccCHHHHHHHHHHHHhCCcc
Confidence 333333 23777777788888888888877 999999999886221 111133344788888777653
Q ss_pred cCCh------------H-----HHhHHHHHHHHHHHHHHhcCCC--ChHHHHHH----HhCCHHHHHHHHHHHHHhcCCC
Q 005499 399 SSSD------------Y-----ERSRLQSEALKSLDGASTFENN--NADLFFDL----EQRNLSTALRYAKQYIDATGGS 455 (693)
Q Consensus 399 ~~~~------------~-----~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l----~~~~~~~A~~~~~~al~~~p~~ 455 (693)
.... . .+......+...+.+++...|. ++.+++.+ ..+++.+|+..+.+++...|++
T Consensus 430 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd~ 509 (987)
T PRK09782 430 ATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDA 509 (987)
T ss_pred cchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCch
Confidence 1110 0 0111114466677777777788 88888877 5589999999999999999975
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCccc
Q 005499 456 VLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRC 535 (693)
Q Consensus 456 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 535 (693)
.....+|.++...|++++|+..+++++...| ....+..+|.++...|++++|+.+|+++++..|..
T Consensus 510 --~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p---~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~--------- 575 (987)
T PRK09782 510 --WQHRAVAYQAYQVEDYATALAAWQKISLHDM---SNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGD--------- 575 (987)
T ss_pred --HHHHHHHHHHHHCCCHHHHHHHHHHHhccCC---CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcc---------
Confidence 4466778888899999999999999877766 34567889999999999999999999999886433
Q ss_pred ccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCCh
Q 005499 536 LSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYV 615 (693)
Q Consensus 536 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 615 (693)
...+..++......|++++|+..|++++..+|+ +.++..+|.++.+.|++++|+..|++++.++|+++
T Consensus 576 -----------~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~ 643 (987)
T PRK09782 576 -----------NALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNS 643 (987)
T ss_pred -----------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 455666777777889999999999999999996 89999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCCcc
Q 005499 616 PCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASMLEESDPIESF 689 (693)
Q Consensus 616 ~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 689 (693)
.++.++|.++...|+++ +|+..|+++++.+|+++.+++++|.++...|++++|+.+|+++++++|++..+.+
T Consensus 644 ~a~~nLG~aL~~~G~~e--eAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~ 715 (987)
T PRK09782 644 NYQAALGYALWDSGDIA--QSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITP 715 (987)
T ss_pred HHHHHHHHHHHHCCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhh
Confidence 99999999999999998 9999999999999999999999999999999999999999999999999877654
No 10
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=3.9e-33 Score=308.86 Aligned_cols=592 Identities=9% Similarity=-0.046 Sum_probs=422.4
Q ss_pred CCccchhcccCcccchhhhhcccCCcCHHHHHHHhhhcc--CCCHHHHHHHHHHHHhhcCCHHHHHhhhccCCcchhh-h
Q 005499 12 GGSARELCVNGACMKAAEVEAKLDEGNIQEAESSLREGL--SLNFEEARALLGRLEYQRGNVEGALRVFDGIDLHAAI-Q 88 (693)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l--~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~-~ 88 (693)
..+|.+++|+++..+...++.|+..|++++|+..+++++ +|++...+..||.+ ++|++|+.+|+++...... .
T Consensus 67 l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~n~ 142 (987)
T PRK09782 67 FEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI----PVEVKSVTTVEELLAQQKACD 142 (987)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh----ccChhHHHHHHHHHHhCCCCh
Confidence 346789999999999999999999999999999999999 56555666666666 9999999999997422111 1
Q ss_pred hccccchhh--hhhhccCCCCCCCccchhh--HHHHH--H-HHHHHHHHHhHhhCChHHHHHHHHHHHHHHHHhhhcCCC
Q 005499 89 RLQPSFSEK--SASKKCRSRSDSHVSVSQH--AASLV--L-EAIYLKAKSLQKLGRLTEAANECKSVLDAVERIFQQGIP 161 (693)
Q Consensus 89 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~--~-~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 161 (693)
+....++.. ..+.......++... ... ..... . .....++.+|.++|++++|+..++++++. .+
T Consensus 143 ~~~~~la~~~~~~~~l~y~q~eqAl~-AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~--------~p 213 (987)
T PRK09782 143 AVPTLRCRSEVGQNALRLAQLPVARA-QLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQ--------NT 213 (987)
T ss_pred hHHHHHHHHhhccchhhhhhHHHHHH-HHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhc--------CC
Confidence 111111111 000000000000000 000 00001 1 24555689999999999999999888663 22
Q ss_pred ChhhhhhHHHHHHHHHhhhHHHHhh-cCCchHHHHHHHHHhcccCCCChhHHHHH--------HHHHHHHhhhcccc--c
Q 005499 162 DAQVDNRLQETVSRAVELLPELWKQ-VGCDHDALAAYRRAVLSQWNLDNECCARI--------QKRFAVFLLHSGVE--A 230 (693)
Q Consensus 162 ~~~~~~~~~~~~~~a~~~l~~~~~~-~g~~~~A~~~~~~~l~~~~~~~~~~~~~~--------~~~~a~~l~~~~~~--~ 230 (693)
... +....|+.+|.+ +++ ++|+..|+..+.. ++.....+ ....+...++.... .
T Consensus 214 l~~----------~~~~~L~~ay~q~l~~-~~a~al~~~~lk~----d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~ 278 (987)
T PRK09782 214 LSA----------AERRQWFDVLLAGQLD-DRLLALQSQGIFT----DPQSRITYATALAYRGEKARLQHYLIENKPLFT 278 (987)
T ss_pred CCH----------HHHHHHHHHHHHhhCH-HHHHHHhchhccc----CHHHHHHHHHHHHHCCCHHHHHHHHHhCccccc
Confidence 222 245567788988 577 8888887764441 22211111 11112222221111 0
Q ss_pred CCCCCcC------------CC--------------------CCcccCCChhHHHHHHHHHHHHHHhhcCCCCcHHHHHHH
Q 005499 231 GPPSLGS------------QV--------------------EGSYAPKNNLEEAILLLLILMKKYHLGKIKWDPAVMEHL 278 (693)
Q Consensus 231 ~~~~~~~------------~~--------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~~l 278 (693)
..|.... .. ...+..++.+.- ...++...|.++. ..+
T Consensus 279 ~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~--~~~ 347 (987)
T PRK09782 279 TDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDA---------AQKLLATLPANEM--LEE 347 (987)
T ss_pred CCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHH---------HHHHhcCCCcchH--HHH
Confidence 0111000 00 011111222221 1223333444442 233
Q ss_pred HHHHH-hcCCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHh
Q 005499 279 TYALS-LCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPND---LMALLLAAKICSE 354 (693)
Q Consensus 279 ~~~~~-~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~---~~~~~~~a~~~~~ 354 (693)
..+.. ..+.+.++....+...+..|.+.....+++....+.|++++|..+|+.+.... ++. ......++.++..
T Consensus 348 r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~ 425 (987)
T PRK09782 348 RYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQ--GDARLSQTLMARLASLLES 425 (987)
T ss_pred HHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCC--cccccCHHHHHHHHHHHHh
Confidence 33333 34777888888888888888899999999999999999999999999998832 221 2222245555554
Q ss_pred cCC-------------------------cHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCChHHHhHHH
Q 005499 355 DCH-------------------------LAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQ 409 (693)
Q Consensus 355 ~~~-------------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~ 409 (693)
+.. .. ++...+..+....+..+....+.++..+|.++.. ++.
T Consensus 426 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~----------- 492 (987)
T PRK09782 426 HPYLATPAKVAILSKPLPLAEQRQWQSQLP-GIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLP----------- 492 (987)
T ss_pred CCcccchHHHHHhccccccchhHHHHhhhh-hhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCc-----------
Confidence 433 11 1122222333333322241138899999999987 788
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHH-----HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005499 410 SEALKSLDGASTFENNNADLFFDL-----EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAAL 484 (693)
Q Consensus 410 ~~A~~~~~~al~~~p~~~~~~~~l-----~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 484 (693)
.+|+..|.+++...|++.. ...+ ..|++++|+..|++++...|.+ ..+..+|.++...|++++|+..+++++
T Consensus 493 ~eAi~a~~~Al~~~Pd~~~-~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~--~a~~~la~all~~Gd~~eA~~~l~qAL 569 (987)
T PRK09782 493 GVALYAWLQAEQRQPDAWQ-HRAVAYQAYQVEDYATALAAWQKISLHDMSN--EDLLAAANTAQAAGNGAARDRWLQQAE 569 (987)
T ss_pred HHHHHHHHHHHHhCCchHH-HHHHHHHHHHCCCHHHHHHHHHHHhccCCCc--HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999999997653 2222 7999999999999988775654 668899999999999999999999999
Q ss_pred hhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChH
Q 005499 485 DETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWK 564 (693)
Q Consensus 485 ~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 564 (693)
...| .....+..++......|++++|+..|+++++..| . ..++..+|.++.+.|+++
T Consensus 570 ~l~P--~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P--------------------~-~~a~~~LA~~l~~lG~~d 626 (987)
T PRK09782 570 QRGL--GDNALYWWLHAQRYIPGQPELALNDLTRSLNIAP--------------------S-ANAYVARATIYRQRHNVP 626 (987)
T ss_pred hcCC--ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--------------------C-HHHHHHHHHHHHHCCCHH
Confidence 9999 6777776666667777999999999999999974 2 578999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 005499 565 DVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDAL 644 (693)
Q Consensus 565 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al 644 (693)
+|+..|++++.++|+++.++.++|.++...|++++|+..|+++++.+|+++.++.++|.++..+|+++ +|+..|++++
T Consensus 627 eA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~--eA~~~l~~Al 704 (987)
T PRK09782 627 AAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMA--ATQHYARLVI 704 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCC
Q 005499 645 RIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASMLEESDP 685 (693)
Q Consensus 645 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 685 (693)
+++|++..+....|++.....+++.|.+.++++..++|+..
T Consensus 705 ~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 705 DDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred hcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 99999999999999999999999999999999999998875
No 11
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.8e-33 Score=285.66 Aligned_cols=567 Identities=14% Similarity=0.091 Sum_probs=451.9
Q ss_pred chhcccCcccchhhhhcccCCcCHHHHHHHhhhcc--CC-CHHHHHHHHHHHHhhcCCHHHHHhhhccCC-cchhhhhcc
Q 005499 16 RELCVNGACMKAAEVEAKLDEGNIQEAESSLREGL--SL-NFEEARALLGRLEYQRGNVEGALRVFDGID-LHAAIQRLQ 91 (693)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l--~~-~~~~a~~~lg~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~ 91 (693)
...+|++|-+.+++|...|..|+|..|...|++++ .| ..++.+..+|.++.++|+.+.|+.-|+++. .++......
T Consensus 157 l~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~al 236 (1018)
T KOG2002|consen 157 LKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSAL 236 (1018)
T ss_pred HhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHH
Confidence 46789999999999999999999999999999988 33 347888999999999999999999999973 332111111
Q ss_pred ccchhhhhhhccCCCCCCCccch---hhHHH---HHHHHHHHHHHHhHhhCChHHHHHHHHHHHHHHHHhhhcCCCChhh
Q 005499 92 PSFSEKSASKKCRSRSDSHVSVS---QHAAS---LVLEAIYLKAKSLQKLGRLTEAANECKSVLDAVERIFQQGIPDAQV 165 (693)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 165 (693)
..++. ....-...+...... ..+.. ..+.++..++.-++-.|+|..+......++...
T Consensus 237 v~L~~---~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t------------- 300 (1018)
T KOG2002|consen 237 VALGE---VDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT------------- 300 (1018)
T ss_pred HHHHH---HHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh-------------
Confidence 11111 111000000000000 00000 124677788888888999999998877765532
Q ss_pred hhhHHHHHHHHHhhhHHHHhhcCCchHHHHHHHHHhcccCCCChhHHHHHHHHHHHHhhhcccccCCCCCcCCCCCcccC
Q 005499 166 DNRLQETVSRAVELLPELWKQVGCDHDALAAYRRAVLSQWNLDNECCARIQKRFAVFLLHSGVEAGPPSLGSQVEGSYAP 245 (693)
Q Consensus 166 ~~~~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 245 (693)
....+...+++.+|..|..+|++++|...|.+++...++ ... ....-++++|+.
T Consensus 301 --~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d--~~~----------------------l~~~GlgQm~i~ 354 (1018)
T KOG2002|consen 301 --ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADND--NFV----------------------LPLVGLGQMYIK 354 (1018)
T ss_pred --hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCC--Ccc----------------------ccccchhHHHHH
Confidence 112245567888999999999999999999999986331 111 112345678999
Q ss_pred CChhHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHhcC----CHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHCCC
Q 005499 246 KNNLEEAILLLLILMKKYHLGKIKWDPAVMEHLTYALSLCS----QTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQ 321 (693)
Q Consensus 246 ~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g----~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~ 321 (693)
.|.+++++..| ..++...|+..+++..||..|...+ ..+.|..++.+++...|.+.++|..+|..+....-
T Consensus 355 ~~dle~s~~~f-----Ekv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~ 429 (1018)
T KOG2002|consen 355 RGDLEESKFCF-----EKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDP 429 (1018)
T ss_pred hchHHHHHHHH-----HHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcCh
Confidence 99999999877 5667788999999999999998886 57889999999999999999999999999887665
Q ss_pred cHHHHHHHHHHhhcc---CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhc---CCCc--chhHhHHHHHHHHHh
Q 005499 322 NDAALNLLRKSLHKH---ERPNDLMALLLAAKICSEDCHLAAEGIQYARTALSNAQ---GKDE--HLKGVGLRMLGLCLG 393 (693)
Q Consensus 322 ~~~A~~~~~~~l~~~---~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~---~~~~--~~~~~~~~~lg~~~~ 393 (693)
+.. +..|..++..- ..+--+..+..+|..++..|.+. +|...+.+++.... ..+. .......++++.++-
T Consensus 430 ~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~-~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E 507 (1018)
T KOG2002|consen 430 WAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIE-KALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLE 507 (1018)
T ss_pred HHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChH-HHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHH
Confidence 555 99998887421 23445677888898999999999 99999999998721 1111 122446889999999
Q ss_pred hhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChHHHHHH-----HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 005499 394 RHAKVSSSDYERSRLQSEALKSLDGASTFENNNADLFFDL-----EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLS 468 (693)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-----~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~ 468 (693)
..+++ +.|.+.|...++..|...+++..+ ..++..+|..++..++..+..++ .+|..+|.++.
T Consensus 508 ~l~~~-----------~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np-~arsl~G~~~l 575 (1018)
T KOG2002|consen 508 ELHDT-----------EVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNP-NARSLLGNLHL 575 (1018)
T ss_pred hhhhh-----------hHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCc-HHHHHHHHHHH
Confidence 99999 999999999999999999998888 67899999999999999999999 99999999999
Q ss_pred HcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHh------------CChhHHHHHHHHHHHHHHhhhhhcCCcccc
Q 005499 469 AQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQ------------ALPMDAIETYRYLLALVQAQRKSFGPLRCL 536 (693)
Q Consensus 469 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~------------g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 536 (693)
....+..|.+-|+..+.......++.+...+|+++... +.+++|++.|.+++..+
T Consensus 576 ~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d------------- 642 (1018)
T KOG2002|consen 576 KKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND------------- 642 (1018)
T ss_pred hhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-------------
Confidence 99999999998888877544324677788888877643 35667788888888776
Q ss_pred cchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCC
Q 005499 537 SQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIE--PSY 614 (693)
Q Consensus 537 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~ 614 (693)
|.+..+-+.+|.++...|++.+|+.+|.++.+...++.++|.++|.||..+|+|..|++.|+.+++.. .++
T Consensus 643 -------pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~ 715 (1018)
T KOG2002|consen 643 -------PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNR 715 (1018)
T ss_pred -------cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 55578889999999999999999999999998877889999999999999999999999999999864 356
Q ss_pred hhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 005499 615 VPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDG 665 (693)
Q Consensus 615 ~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 665 (693)
+.++..||.++++.|.+. +|.+.+.+++...|.++.+.+++|.+..+.+
T Consensus 716 ~~vl~~Lara~y~~~~~~--eak~~ll~a~~~~p~~~~v~FN~a~v~kkla 764 (1018)
T KOG2002|consen 716 SEVLHYLARAWYEAGKLQ--EAKEALLKARHLAPSNTSVKFNLALVLKKLA 764 (1018)
T ss_pred HHHHHHHHHHHHHhhhHH--HHHHHHHHHHHhCCccchHHhHHHHHHHHHH
Confidence 789999999999999988 9999999999999999999999998877653
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=3.5e-32 Score=297.56 Aligned_cols=402 Identities=15% Similarity=0.045 Sum_probs=318.8
Q ss_pred HHHhhhHHHHhhcCCchHHHHHHHHHhcccCCCChhHHHHHHHHHHHHhhhcccccCCCCCcCCCCCcccCCChhHHHHH
Q 005499 175 RAVELLPELWKQVGCDHDALAAYRRAVLSQWNLDNECCARIQKRFAVFLLHSGVEAGPPSLGSQVEGSYAPKNNLEEAIL 254 (693)
Q Consensus 175 ~a~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 254 (693)
..+...|..+++.|++++|+..|++++...
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~-------------------------------------------------- 157 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIECK-------------------------------------------------- 157 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------------------------------------------
Confidence 356667888888889999988888887641
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhh
Q 005499 255 LLLILMKKYHLGKIKWDPAVMEHLTYALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDAALNLLRKSLH 334 (693)
Q Consensus 255 ~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 334 (693)
| ++..+..++.+|...|+++.|++.+++++...|+...+|+.+|.++...|++++|+..|..+..
T Consensus 158 --------------p-~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~ 222 (615)
T TIGR00990 158 --------------P-DPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCI 222 (615)
T ss_pred --------------C-chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 2345677888888999999999999999999888899999999999999999999988887766
Q ss_pred ccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCcc----------------------------hhHhHHH
Q 005499 335 KHERPNDLMALLLAAKICSEDCHLAAEGIQYARTALSNAQGKDEH----------------------------LKGVGLR 386 (693)
Q Consensus 335 ~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~----------------------------~~~~~~~ 386 (693)
. ++.+............. ..+...+...+...|..... .....+.
T Consensus 223 ~--~~~~~~~~~~~~~~~l~-----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (615)
T TIGR00990 223 I--DGFRNEQSAQAVERLLK-----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQL 295 (615)
T ss_pred h--CCCccHHHHHHHHHHHH-----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchH
Confidence 3 23322211111100000 12333333333333311100 0011222
Q ss_pred HHHHHHh---hhhcccCChHHHhHHHHHHHHHHHHHHhcC---CCChHHHHHH-----HhCCHHHHHHHHHHHHHhcCCC
Q 005499 387 MLGLCLG---RHAKVSSSDYERSRLQSEALKSLDGASTFE---NNNADLFFDL-----EQRNLSTALRYAKQYIDATGGS 455 (693)
Q Consensus 387 ~lg~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l-----~~~~~~~A~~~~~~al~~~p~~ 455 (693)
.+|..+. ..+.+ ++|+..|++++..+ |....++..+ ..|++++|+..++++++++|..
T Consensus 296 ~l~~~~~e~~~~~~y-----------~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~ 364 (615)
T TIGR00990 296 QLGLKSPESKADESY-----------EEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRV 364 (615)
T ss_pred HHHHHHHHhhhhhhH-----------HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 2222221 12344 89999999999764 5555566555 7899999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCccc
Q 005499 456 VLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRC 535 (693)
Q Consensus 456 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 535 (693)
. .+|..+|.++...|++++|+..++++++.+| +++.+++.+|.++...|++++|+..|++++..+|.+
T Consensus 365 ~-~~~~~la~~~~~~g~~~eA~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~--------- 432 (615)
T TIGR00990 365 T-QSYIKRASMNLELGDPDKAEEDFDKALKLNS--EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF--------- 432 (615)
T ss_pred H-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC---------
Confidence 8 9999999999999999999999999999999 899999999999999999999999999999998544
Q ss_pred ccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCCh
Q 005499 536 LSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYV 615 (693)
Q Consensus 536 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 615 (693)
..++..+|.++...|++++|+..|++++...|+++.++..+|.++...|++++|+..|++++.+.|.+.
T Consensus 433 -----------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~ 501 (615)
T TIGR00990 433 -----------IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETK 501 (615)
T ss_pred -----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccc
Confidence 688999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred hHH------HHHHHHH-HHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCC
Q 005499 616 PCK------VLVGSLF-SKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASMLEESD 684 (693)
Q Consensus 616 ~~~------~~la~~~-~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 684 (693)
..+ ...+.++ ...|+++ +|+.+++++++++|++..++..+|.++...|++++|+.+|++++++.++.
T Consensus 502 ~~~~~~~~l~~~a~~~~~~~~~~~--eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 502 PMYMNVLPLINKALALFQWKQDFI--EAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred cccccHHHHHHHHHHHHHHhhhHH--HHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 322 2333333 3468888 99999999999999999999999999999999999999999999987763
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=3.4e-30 Score=281.95 Aligned_cols=437 Identities=13% Similarity=0.041 Sum_probs=332.2
Q ss_pred HHHHHHHHHHHhHhhCChHHHHHHHHHHHHHHHHhhhcCCCChhhhhhHHHHHHHHHhhhHHHHhhcCCchHHHHHHHHH
Q 005499 121 VLEAIYLKAKSLQKLGRLTEAANECKSVLDAVERIFQQGIPDAQVDNRLQETVSRAVELLPELWKQVGCDHDALAAYRRA 200 (693)
Q Consensus 121 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~~ 200 (693)
.+..+..+|..+++.|+|++|+..|.+++... |+.. .+..++.+|.++|++++|+..+.++
T Consensus 126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~--------p~~~-----------~~~n~a~~~~~l~~~~~Ai~~~~~a 186 (615)
T TIGR00990 126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIECK--------PDPV-----------YYSNRAACHNALGDWEKVVEDTTAA 186 (615)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CchH-----------HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45678889999999999999999999988742 2211 4566788999999999999999999
Q ss_pred hcccCCCChhHHHHHHHHHHHHhhhcccccCCCCCcCCCCCcccCCChhHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 005499 201 VLSQWNLDNECCARIQKRFAVFLLHSGVEAGPPSLGSQVEGSYAPKNNLEEAILLLLILMKKYHLGKIKWDPAVMEHLTY 280 (693)
Q Consensus 201 l~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~~l~~ 280 (693)
+...|. . .... ... +..|...|++++|+..+..... ..+.+......+..
T Consensus 187 l~l~p~--~--~~a~-~~~--------------------a~a~~~lg~~~eA~~~~~~~~~-----~~~~~~~~~~~~~~ 236 (615)
T TIGR00990 187 LELDPD--Y--SKAL-NRR--------------------ANAYDGLGKYADALLDLTASCI-----IDGFRNEQSAQAVE 236 (615)
T ss_pred HHcCCC--C--HHHH-HHH--------------------HHHHHHcCCHHHHHHHHHHHHH-----hCCCccHHHHHHHH
Confidence 986432 1 1111 111 1235567888888876532211 11222221111111
Q ss_pred HHHhcCCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHh---cCC
Q 005499 281 ALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLAAKICSE---DCH 357 (693)
Q Consensus 281 ~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~---~~~ 357 (693)
.+.. ..+.......++..+.+...|..++..+ ...+...+...+..... .+|.....+..++..... .+.
T Consensus 237 ~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~ 309 (615)
T TIGR00990 237 RLLK----KFAESKAKEILETKPENLPSVTFVGNYL-QSFRPKPRPAGLEDSNE--LDEETGNGQLQLGLKSPESKADES 309 (615)
T ss_pred HHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHH-HHccCCcchhhhhcccc--cccccccchHHHHHHHHHhhhhhh
Confidence 1111 2344445555666666666666666544 33333344444444444 345544444444433222 234
Q ss_pred cHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChHHHHHH----
Q 005499 358 LAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNADLFFDL---- 433 (693)
Q Consensus 358 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l---- 433 (693)
+. +|+..+++++...+..+.. ..++..+|.++...|++ ++|+..|++++.++|.+...+..+
T Consensus 310 y~-~A~~~~~~al~~~~~~~~~--a~a~~~lg~~~~~~g~~-----------~eA~~~~~kal~l~P~~~~~~~~la~~~ 375 (615)
T TIGR00990 310 YE-EAARAFEKALDLGKLGEKE--AIALNLRGTFKCLKGKH-----------LEALADLSKSIELDPRVTQSYIKRASMN 375 (615)
T ss_pred HH-HHHHHHHHHHhcCCCChhh--HHHHHHHHHHHHHcCCH-----------HHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 55 9999999999865322233 78899999999999999 999999999999999999888777
Q ss_pred -HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHH
Q 005499 434 -EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDA 512 (693)
Q Consensus 434 -~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A 512 (693)
..|++++|+..|+++++.+|+++ .++..+|.++...|++++|+..|+++++.+| ++...+..+|.++..+|++++|
T Consensus 376 ~~~g~~~eA~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P--~~~~~~~~la~~~~~~g~~~eA 452 (615)
T TIGR00990 376 LELGDPDKAEEDFDKALKLNSEDP-DIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP--DFIFSHIQLGVTQYKEGSIASS 452 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc--cCHHHHHHHHHHHHHCCCHHHH
Confidence 88999999999999999999999 9999999999999999999999999999999 8999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHH------HHH
Q 005499 513 IETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEM------LHT 586 (693)
Q Consensus 513 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~------~~~ 586 (693)
+..|++++...|.+ +.++..+|.++...|++++|+..|++++.+.|..... +..
T Consensus 453 ~~~~~~al~~~P~~--------------------~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 453 MATFRRCKKNFPEA--------------------PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLIN 512 (615)
T ss_pred HHHHHHHHHhCCCC--------------------hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHH
Confidence 99999999987544 6899999999999999999999999999998875332 223
Q ss_pred HHH-HHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHH
Q 005499 587 EGV-MHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRK 652 (693)
Q Consensus 587 lg~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~ 652 (693)
.+. ++...|++++|+..+++++.++|++..++..+|.++.+.|+++ +|+.+|++++++.+...+
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~--eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVD--EALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHH--HHHHHHHHHHHHhccHHH
Confidence 333 3445799999999999999999999999999999999999999 999999999999887554
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=2e-29 Score=274.45 Aligned_cols=330 Identities=13% Similarity=0.034 Sum_probs=188.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCC
Q 005499 278 LTYALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLAAKICSEDCH 357 (693)
Q Consensus 278 l~~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~ 357 (693)
.+..+.+.|++..|...++..+...|.+.+.++.+|.+....|++++|+..|++++. .+|+++.++..++.++...++
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~--~~P~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLA--VNVCQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCC
Confidence 344455556666666666666665566666666666666666666666666666665 346666666666655555555
Q ss_pred cHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChHHHHHH----
Q 005499 358 LAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNADLFFDL---- 433 (693)
Q Consensus 358 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l---- 433 (693)
+. +|+..+++++...| .. ..++..+|.++...|++ ++|+..+++++...|+++..+..+
T Consensus 126 ~~-~Ai~~l~~Al~l~P---~~--~~a~~~la~~l~~~g~~-----------~eA~~~~~~~~~~~P~~~~a~~~~~~l~ 188 (656)
T PRK15174 126 YA-TVADLAEQAWLAFS---GN--SQIFALHLRTLVLMDKE-----------LQAISLARTQAQEVPPRGDMIATCLSFL 188 (656)
T ss_pred HH-HHHHHHHHHHHhCC---Cc--HHHHHHHHHHHHHCCCh-----------HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 55 56666666666555 33 44555556666666666 666666665555555555444332
Q ss_pred HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhH--
Q 005499 434 EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMD-- 511 (693)
Q Consensus 434 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~-- 511 (693)
..|++++|+..++++++..|.........++.++...|++++|+..+++++...| ++..++..+|.++...|++++
T Consensus 189 ~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p--~~~~~~~~Lg~~l~~~G~~~eA~ 266 (656)
T PRK15174 189 NKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL--DGAALRRSLGLAYYQSGRSREAK 266 (656)
T ss_pred HcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCchhhH
Confidence 5555666666655555554422213333445555555666666666666665555 555555556666666665553
Q ss_pred --HHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 005499 512 --AIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGV 589 (693)
Q Consensus 512 --A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 589 (693)
|+..|+++++.. |.+..++..+|.++...|++++|+..+++++..+|+++.++..+|.
T Consensus 267 ~~A~~~~~~Al~l~--------------------P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~ 326 (656)
T PRK15174 267 LQAAEHWRHALQFN--------------------SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHHHhhC--------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 555555555554 4455555556666666666666666666666556655555555666
Q ss_pred HHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCC
Q 005499 590 MHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTN 650 (693)
Q Consensus 590 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~ 650 (693)
++...|++++|+..|++++..+|++...+..+|.++...|+++ +|+..|+++++..|++
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~d--eA~~~l~~al~~~P~~ 385 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTS--EAESVFEHYIQARASH 385 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHH--HHHHHHHHHHHhChhh
Confidence 6666666666666666655555555544445555555555555 6666666666555554
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.98 E-value=5e-29 Score=271.27 Aligned_cols=338 Identities=14% Similarity=0.047 Sum_probs=288.9
Q ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHH
Q 005499 308 RWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLAAKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRM 387 (693)
Q Consensus 308 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 387 (693)
-....+..+.+.|++.+|+.+++.++. ..|+++.++..++......+++. +|+..+++++...| .+ +.++..
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~--~~p~~~~~l~~l~~~~l~~g~~~-~A~~~l~~~l~~~P---~~--~~a~~~ 115 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVL--TAKNGRDLLRRWVISPLASSQPD-AVLQVVNKLLAVNV---CQ--PEDVLL 115 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHH--hCCCchhHHHHHhhhHhhcCCHH-HHHHHHHHHHHhCC---CC--hHHHHH
Confidence 355667888889999999999999998 45999999999988888888888 99999999999888 55 777899
Q ss_pred HHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChHHHHHH-----HhCCHHHHHHHHHHHHHhcCCCcHHHHHH
Q 005499 388 LGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNADLFFDL-----EQRNLSTALRYAKQYIDATGGSVLKGWKL 462 (693)
Q Consensus 388 lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-----~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 462 (693)
+|.++...|++ ++|+..|++++.++|+++.++..+ ..|++++|+..+++++...|++. .++..
T Consensus 116 la~~l~~~g~~-----------~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~-~a~~~ 183 (656)
T PRK15174 116 VASVLLKSKQY-----------ATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRG-DMIAT 183 (656)
T ss_pred HHHHHHHcCCH-----------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCH-HHHHH
Confidence 99999999999 999999999999999988887776 78999999999999888888887 77666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhh
Q 005499 463 LALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDD 542 (693)
Q Consensus 463 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 542 (693)
++ .+...|++++|+..+++++...|. ........++.++...|++++|+..+++++...|.
T Consensus 184 ~~-~l~~~g~~~eA~~~~~~~l~~~~~-~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~----------------- 244 (656)
T PRK15174 184 CL-SFLNKSRLPEDHDLARALLPFFAL-ERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD----------------- 244 (656)
T ss_pred HH-HHHHcCCHHHHHHHHHHHHhcCCC-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-----------------
Confidence 54 477889999999999998887752 23344456678888899999999999999988744
Q ss_pred cccHHHHHHHHHHHHHhCCChHH----HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHH
Q 005499 543 KVNEFQVWHGLANLYSGLSHWKD----VAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCK 618 (693)
Q Consensus 543 ~~~~~~~~~~la~~~~~~~~~~~----A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 618 (693)
++.++..+|.++...|++++ |+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.++
T Consensus 245 ---~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~ 321 (656)
T PRK15174 245 ---GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVR 321 (656)
T ss_pred ---CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 36888889999999999885 78999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCCcc
Q 005499 619 VLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASMLEESDPIESF 689 (693)
Q Consensus 619 ~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 689 (693)
..+|.++...|+++ +|+..|+++++..|+++..+..+|.++...|++++|+..|+++++.+|+++..+|
T Consensus 322 ~~La~~l~~~G~~~--eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~ 390 (656)
T PRK15174 322 AMYARALRQVGQYT--AASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSF 390 (656)
T ss_pred HHHHHHHHHCCCHH--HHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhH
Confidence 99999999999988 9999999999999988877777888999999999999999999999888775554
No 16
>PLN03077 Protein ECB2; Provisional
Probab=99.97 E-value=8.1e-28 Score=273.81 Aligned_cols=543 Identities=11% Similarity=-0.006 Sum_probs=372.6
Q ss_pred hhhhhcccCCcCHHHHHHHhhhccCCCHHHHHHHHHHHHhhcCCHHHHHhhhccCCcchhhhhccc------cchhhhhh
Q 005499 27 AAEVEAKLDEGNIQEAESSLREGLSLNFEEARALLGRLEYQRGNVEGALRVFDGIDLHAAIQRLQP------SFSEKSAS 100 (693)
Q Consensus 27 ~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------~~~~~~~~ 100 (693)
...-..|...|+++.|...|++...+ +.-+|..|...|.+.|++++|+..|+++...++.|+... .++.....
T Consensus 125 n~li~~~~~~g~~~~A~~~f~~m~~~-d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 125 NAMLSMFVRFGELVHAWYVFGKMPER-DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHHHHHhCCChHHHHHHHhcCCCC-CeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch
Confidence 33445567889999999999988755 355777888999999999999999998754444443221 01100000
Q ss_pred hccCCCCCCCccchhhHHH------HHHHHHHHHHHHhHhhCChHHHHHHHHHHHHHHHHhhhcCCCChhhhhhHHHHHH
Q 005499 101 KKCRSRSDSHVSVSQHAAS------LVLEAIYLKAKSLQKLGRLTEAANECKSVLDAVERIFQQGIPDAQVDNRLQETVS 174 (693)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (693)
..+.. .+... .....+..+..+|.+.|++++|...|+.+.. ++..
T Consensus 204 ~~~~~---------~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----------~d~~---------- 254 (857)
T PLN03077 204 ARGRE---------VHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----------RDCI---------- 254 (857)
T ss_pred hhHHH---------HHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----------CCcc----------
Confidence 00000 00000 0123455666889999999999999877621 3333
Q ss_pred HHHhhhHHHHhhcCCchHHHHHHHHHhcccCCCChhHHHHHHHHHHHHhhhcccccCCCCCcCCCCCcccCCChhHHHHH
Q 005499 175 RAVELLPELWKQVGCDHDALAAYRRAVLSQWNLDNECCARIQKRFAVFLLHSGVEAGPPSLGSQVEGSYAPKNNLEEAIL 254 (693)
Q Consensus 175 ~a~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 254 (693)
.+..+...|.+.|++++|+..|++|...+..||..++..+... ++..++.+.+..
T Consensus 255 -s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a------------------------~~~~g~~~~a~~ 309 (857)
T PLN03077 255 -SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISA------------------------CELLGDERLGRE 309 (857)
T ss_pred -hhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH------------------------HHhcCChHHHHH
Confidence 4555667899999999999999999999999999888776332 223345555555
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhh
Q 005499 255 LLLILMKKYHLGKIKWDPAVMEHLTYALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDAALNLLRKSLH 334 (693)
Q Consensus 255 ~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 334 (693)
++..+.. ...+.+..+++.|...|.++|+++.|.+.|+++.. ++..+|..+...|.+.|++++|+.+|+++..
T Consensus 310 l~~~~~~----~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~ 382 (857)
T PLN03077 310 MHGYVVK----TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQ 382 (857)
T ss_pred HHHHHHH----hCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5433322 22345666777777777777777777777776543 3455677777777777777777777777766
Q ss_pred ccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHH
Q 005499 335 KHERPNDLMALLLAAKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALK 414 (693)
Q Consensus 335 ~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~ 414 (693)
.+..|+......++. .|...++.. +|.+++..+.+.....+ ..++..+...|.+.|+. ++|.+
T Consensus 383 ~g~~Pd~~t~~~ll~-a~~~~g~~~-~a~~l~~~~~~~g~~~~----~~~~n~Li~~y~k~g~~-----------~~A~~ 445 (857)
T PLN03077 383 DNVSPDEITIASVLS-ACACLGDLD-VGVKLHELAERKGLISY----VVVANALIEMYSKCKCI-----------DKALE 445 (857)
T ss_pred hCCCCCceeHHHHHH-HHhccchHH-HHHHHHHHHHHhCCCcc----hHHHHHHHHHHHHcCCH-----------HHHHH
Confidence 555566554444443 444555555 66666666665433211 44555666666666666 66666
Q ss_pred HHHHHHhcCCCChHHHHHH-----HhCCHHHHHHHHHHHHHhc-CCC---------------------------------
Q 005499 415 SLDGASTFENNNADLFFDL-----EQRNLSTALRYAKQYIDAT-GGS--------------------------------- 455 (693)
Q Consensus 415 ~~~~al~~~p~~~~~~~~l-----~~~~~~~A~~~~~~al~~~-p~~--------------------------------- 455 (693)
.|++.... +..+|..+ ..|+.++|+..|++++... |+.
T Consensus 446 vf~~m~~~---d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~ 522 (857)
T PLN03077 446 VFHNIPEK---DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGF 522 (857)
T ss_pred HHHhCCCC---CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCc
Confidence 66654322 22233333 5556666666666654321 211
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCccc
Q 005499 456 VLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRC 535 (693)
Q Consensus 456 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 535 (693)
.......+...|.+.|++++|...|+.. + .+...|..+...+...|+.++|++.|+++.+..
T Consensus 523 ~~~~~naLi~~y~k~G~~~~A~~~f~~~----~--~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g------------ 584 (857)
T PLN03077 523 DGFLPNALLDLYVRCGRMNYAWNQFNSH----E--KDVVSWNILLTGYVAHGKGSMAVELFNRMVESG------------ 584 (857)
T ss_pred cceechHHHHHHHHcCCHHHHHHHHHhc----C--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC------------
Confidence 1123345567888889999999888875 3 477889999999999999999999999988642
Q ss_pred ccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 005499 536 LSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKA--YSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPS 613 (693)
Q Consensus 536 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 613 (693)
. ..+..++..+...+.+.|++++|..+|+.+.+..+ .+...+..+..++.+.|++++|.+.+++. ...|+
T Consensus 585 ------~-~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd 656 (857)
T PLN03077 585 ------V-NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD 656 (857)
T ss_pred ------C-CCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC
Confidence 1 22356777778889999999999999999885432 24567889999999999999999999886 34554
Q ss_pred ChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 005499 614 YVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASML 680 (693)
Q Consensus 614 ~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 680 (693)
...|..|-..+...|+.+ .+....+++++++|+++..+..++++|...|++++|.+..+...+.
T Consensus 657 -~~~~~aLl~ac~~~~~~e--~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 657 -PAVWGALLNACRIHRHVE--LGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred -HHHHHHHHHHHHHcCChH--HHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 567888877888888888 8999999999999999999999999999999999999998877653
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.97 E-value=4.8e-28 Score=269.46 Aligned_cols=396 Identities=13% Similarity=-0.014 Sum_probs=331.1
Q ss_pred CCChhHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHCCCcHH
Q 005499 245 PKNNLEEAILLLLILMKKYHLGKIKWDPAVMEHLTYALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDA 324 (693)
Q Consensus 245 ~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~ 324 (693)
-.|+.++|+..+... ....|....++..++.++...|+++.|++.+++++...|.++..+..++.++...|++++
T Consensus 27 ~~g~~~~A~~~~~~~-----~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~e 101 (765)
T PRK10049 27 WAGQDAEVITVYNRY-----RVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDE 101 (765)
T ss_pred HcCCHHHHHHHHHHH-----HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 357888888766433 223466777899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCChHH
Q 005499 325 ALNLLRKSLHKHERPNDLMALLLAAKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYE 404 (693)
Q Consensus 325 A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~ 404 (693)
|+..+++++. ..|++.. +..++.++...++.. +|+..++++++..| .. ..++..++.++...+..
T Consensus 102 A~~~l~~~l~--~~P~~~~-~~~la~~l~~~g~~~-~Al~~l~~al~~~P---~~--~~~~~~la~~l~~~~~~------ 166 (765)
T PRK10049 102 ALVKAKQLVS--GAPDKAN-LLALAYVYKRAGRHW-DELRAMTQALPRAP---QT--QQYPTEYVQALRNNRLS------ 166 (765)
T ss_pred HHHHHHHHHH--hCCCCHH-HHHHHHHHHHCCCHH-HHHHHHHHHHHhCC---CC--HHHHHHHHHHHHHCCCh------
Confidence 9999999999 5699999 999999999999888 99999999999999 55 77788899999999999
Q ss_pred HhHHHHHHHHHHHHHHhcCCCChH----------HHHHH-----HhCCH---HHHHHHHHHHHHhcCCCcHHH-------
Q 005499 405 RSRLQSEALKSLDGASTFENNNAD----------LFFDL-----EQRNL---STALRYAKQYIDATGGSVLKG------- 459 (693)
Q Consensus 405 ~~~~~~~A~~~~~~al~~~p~~~~----------~~~~l-----~~~~~---~~A~~~~~~al~~~p~~~~~~------- 459 (693)
++|+..++++.. .|.... +...+ ..+++ ++|+..++.+++..|.++ ..
T Consensus 167 -----e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p-~~~~~~~~a 239 (765)
T PRK10049 167 -----APALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNP-DATADYQRA 239 (765)
T ss_pred -----HHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCC-ccchHHHHH
Confidence 999999998776 554211 11111 22345 789999999997654443 22
Q ss_pred HHH-HHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccc
Q 005499 460 WKL-LALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQ 538 (693)
Q Consensus 460 ~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 538 (693)
... ++ .+...|++++|+..|+++++..+. ....+...++.++...|++++|+..|++++...|...
T Consensus 240 ~~d~l~-~Ll~~g~~~eA~~~~~~ll~~~~~-~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~----------- 306 (765)
T PRK10049 240 RIDRLG-ALLARDRYKDVISEYQRLKAEGQI-IPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIA----------- 306 (765)
T ss_pred HHHHHH-HHHHhhhHHHHHHHHHHhhccCCC-CCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCC-----------
Confidence 222 33 346779999999999999988641 1223444469999999999999999999987654331
Q ss_pred hhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCC---------------CHHHHHHHHHHHHHCCChHHHHHH
Q 005499 539 IEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAY---------------SAEMLHTEGVMHEGCGQTHEALRA 603 (693)
Q Consensus 539 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~ 603 (693)
.........++.++...|++++|+..++++....|. ...++..++.++...|++++|+..
T Consensus 307 -----~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~ 381 (765)
T PRK10049 307 -----DLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMR 381 (765)
T ss_pred -----CCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 111356677888899999999999999999988763 235678899999999999999999
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccC
Q 005499 604 YINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASMLEES 683 (693)
Q Consensus 604 ~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 683 (693)
+++++...|.++.++..+|.++...|+++ +|+..++++++++|+++.+++.+|.++...|++++|...++++++..|+
T Consensus 382 l~~al~~~P~n~~l~~~lA~l~~~~g~~~--~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 382 ARELAYNAPGNQGLRIDYASVLQARGWPR--AAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 005499 684 DPIE 687 (693)
Q Consensus 684 ~~~~ 687 (693)
++.+
T Consensus 460 ~~~~ 463 (765)
T PRK10049 460 DPGV 463 (765)
T ss_pred CHHH
Confidence 9864
No 18
>PLN03077 Protein ECB2; Provisional
Probab=99.97 E-value=1.6e-26 Score=263.29 Aligned_cols=548 Identities=11% Similarity=0.001 Sum_probs=392.0
Q ss_pred cccchhhhhcccCCcCHHHHHHHhhhccC---CCHHHHHHHHHHHHhhcCCHHHHHhhhccCCcchhhhhccccchhhhh
Q 005499 23 ACMKAAEVEAKLDEGNIQEAESSLREGLS---LNFEEARALLGRLEYQRGNVEGALRVFDGIDLHAAIQRLQPSFSEKSA 99 (693)
Q Consensus 23 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~---~~~~~a~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (693)
..........+...|++++|...|+.... +.+...+..+...+...+.++.|...+..+...+..+..
T Consensus 51 ~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------- 121 (857)
T PLN03077 51 THDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGV--------- 121 (857)
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCc---------
Confidence 33455667788899999999999998773 334455666677788889999999999875333211110
Q ss_pred hhccCCCCCCCccchhhHHHHHHHHHHHHHHHhHhhCChHHHHHHHHHHHHHHHHhhhcCCCChhhhhhHHHHHHHHHhh
Q 005499 100 SKKCRSRSDSHVSVSQHAASLVLEAIYLKAKSLQKLGRLTEAANECKSVLDAVERIFQQGIPDAQVDNRLQETVSRAVEL 179 (693)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 179 (693)
.....+-..|.+.|+.+.|.+.|+.+.. ++.. ++..
T Consensus 122 -----------------------~~~n~li~~~~~~g~~~~A~~~f~~m~~----------~d~~-----------~~n~ 157 (857)
T PLN03077 122 -----------------------RLGNAMLSMFVRFGELVHAWYVFGKMPE----------RDLF-----------SWNV 157 (857)
T ss_pred -----------------------hHHHHHHHHHHhCCChHHHHHHHhcCCC----------CCee-----------EHHH
Confidence 1234445678899999999988877621 3333 4555
Q ss_pred hHHHHhhcCCchHHHHHHHHHhcccCCCChhHHHHHHH------------HHHHHhhhcccccCCCCCcCCCCCcccCCC
Q 005499 180 LPELWKQVGCDHDALAAYRRAVLSQWNLDNECCARIQK------------RFAVFLLHSGVEAGPPSLGSQVEGSYAPKN 247 (693)
Q Consensus 180 l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~------------~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~ 247 (693)
+...|.+.|++++|+..|++|...+..||..++..+.. +++..+++.+... .+.....+...|++.|
T Consensus 158 li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~n~Li~~y~k~g 236 (857)
T PLN03077 158 LVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFEL-DVDVVNALITMYVKCG 236 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCc-ccchHhHHHHHHhcCC
Confidence 67789999999999999999999898999999877633 2333333333221 1222334556778888
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHHCCCcHHHH
Q 005499 248 NLEEAILLLLILMKKYHLGKIKWDPAVMEHLTYALSLCSQTSILAKQLEEIMPG-VFLRSDRWNALALCYSAIGQNDAAL 326 (693)
Q Consensus 248 ~~~~a~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~e~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~ 326 (693)
.+++|..+|..+ ...+...|+.+...|.+.|++++|.+.|+++... ..++..++..+...+...|+.+.|.
T Consensus 237 ~~~~A~~lf~~m--------~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~ 308 (857)
T PLN03077 237 DVVSARLVFDRM--------PRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGR 308 (857)
T ss_pred CHHHHHHHHhcC--------CCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH
Confidence 888887776432 1235567888888888888888888888877543 2356667777777778888888888
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCChHHHh
Q 005499 327 NLLRKSLHKHERPNDLMALLLAAKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERS 406 (693)
Q Consensus 327 ~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~ 406 (693)
+++..+.+.+..|+ ...+..+...+.+.++.. +|...+++... .. ...|..+...|.+.|++
T Consensus 309 ~l~~~~~~~g~~~d-~~~~n~Li~~y~k~g~~~-~A~~vf~~m~~------~d--~~s~n~li~~~~~~g~~-------- 370 (857)
T PLN03077 309 EMHGYVVKTGFAVD-VSVCNSLIQMYLSLGSWG-EAEKVFSRMET------KD--AVSWTAMISGYEKNGLP-------- 370 (857)
T ss_pred HHHHHHHHhCCccc-hHHHHHHHHHHHhcCCHH-HHHHHHhhCCC------CC--eeeHHHHHHHHHhCCCH--------
Confidence 88888877654454 444455555677777776 78777776532 12 45677888888888888
Q ss_pred HHHHHHHHHHHHHHhc--CCCChHHHHHH----HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q 005499 407 RLQSEALKSLDGASTF--ENNNADLFFDL----EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVT 480 (693)
Q Consensus 407 ~~~~~A~~~~~~al~~--~p~~~~~~~~l----~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~ 480 (693)
++|++.|+++... .|+.......+ ..|+++.|...+..+.+........++..+...|.+.|++++|.++|
T Consensus 371 ---~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf 447 (857)
T PLN03077 371 ---DKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVF 447 (857)
T ss_pred ---HHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888877543 35443322222 67888888888888877655443367777888888888888888888
Q ss_pred HHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhC
Q 005499 481 DAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGL 560 (693)
Q Consensus 481 ~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 560 (693)
+++.+ .+...|..+...+...|+.++|+..|+++.... ..+..++..+..++...
T Consensus 448 ~~m~~-----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~--------------------~pd~~t~~~lL~a~~~~ 502 (857)
T PLN03077 448 HNIPE-----KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTL--------------------KPNSVTLIAALSACARI 502 (857)
T ss_pred HhCCC-----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCC--------------------CCCHhHHHHHHHHHhhh
Confidence 77543 244677788888888888888888888876421 33356677777778888
Q ss_pred CChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHH
Q 005499 561 SHWKDVAICMGKARELK-AYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSL 639 (693)
Q Consensus 561 ~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~ 639 (693)
|+.+.+.+++..+++.. ..+..+...+...|.+.|+.++|...|+.. +.+..+|+.+...|.+.|+.+ +|+++
T Consensus 503 g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~--~A~~l 576 (857)
T PLN03077 503 GALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGS--MAVEL 576 (857)
T ss_pred chHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHH--HHHHH
Confidence 88888888888777653 234445667788999999999999999886 557789999999999999998 99999
Q ss_pred HHHHHhh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCC
Q 005499 640 LSDALRI--EPTNRKAWYYLGLVHKDDGRIADAADCFQAASMLEESDP 685 (693)
Q Consensus 640 ~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 685 (693)
|+++.+. .|+ ..++..+-..+.+.|++++|.++|+...+..+-.|
T Consensus 577 f~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P 623 (857)
T PLN03077 577 FNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP 623 (857)
T ss_pred HHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC
Confidence 9998874 454 45677777889999999999999999885544444
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.96 E-value=8.8e-26 Score=251.40 Aligned_cols=367 Identities=12% Similarity=0.014 Sum_probs=287.4
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHH
Q 005499 269 KWDPAVMEHLTYALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLA 348 (693)
Q Consensus 269 p~~~~~~~~l~~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~ 348 (693)
|.++.++..++.++...|+++.|+..+++++...|++.. |+.+|.++...|++++|+..+++++. ..|++..++..+
T Consensus 80 P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~--~~P~~~~~~~~l 156 (765)
T PRK10049 80 PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALP--RAPQTQQYPTEY 156 (765)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 566777778888899999999999999999999999999 99999999999999999999999999 569999998888
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChH
Q 005499 349 AKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNAD 428 (693)
Q Consensus 349 a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 428 (693)
+.++...+... +|+..++++.. .|.............+.......+. ...++....++|+..++++++..|.++.
T Consensus 157 a~~l~~~~~~e-~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~---~~~~r~~~ad~Al~~~~~ll~~~~~~p~ 231 (765)
T PRK10049 157 VQALRNNRLSA-PALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTR---SEKERYAIADRALAQYDALEALWHDNPD 231 (765)
T ss_pred HHHHHHCCChH-HHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhccccc---ChhHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 88777666555 88888877665 3311000001111112222211111 1112222237789999998865443332
Q ss_pred HH-------H----HH-HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCc----
Q 005499 429 LF-------F----DL-EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQ---- 492 (693)
Q Consensus 429 ~~-------~----~l-~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---- 492 (693)
.. . .+ ..|++++|+..|+++++..|..+..+...++.++...|++++|+..|++++...| .+
T Consensus 232 ~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p--~~~~~~ 309 (765)
T PRK10049 232 ATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPE--TIADLS 309 (765)
T ss_pred cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCC--CCCCCC
Confidence 21 1 11 7799999999999999887554424555679999999999999999999998887 44
Q ss_pred hHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhccc--HHHHHHHHHHHHHhCCChHHHHHHH
Q 005499 493 GPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVN--EFQVWHGLANLYSGLSHWKDVAICM 570 (693)
Q Consensus 493 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~ 570 (693)
......++.++...|++++|+..++++....|.....++.. ...|. ...++..++.++...|++++|+..+
T Consensus 310 ~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~-------~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l 382 (765)
T PRK10049 310 DEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSP-------TSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRA 382 (765)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCC-------CCCCCchHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34567778888999999999999999998876543222110 11233 2467889999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCC
Q 005499 571 GKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTN 650 (693)
Q Consensus 571 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~ 650 (693)
++++...|+++.++..+|.++...|++++|+..+++++.++|++..++..+|.++...|+++ +|+..++++++..|++
T Consensus 383 ~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~--~A~~~~~~ll~~~Pd~ 460 (765)
T PRK10049 383 RELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWR--QMDVLTDDVVAREPQD 460 (765)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHH--HHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999998 9999999999999999
Q ss_pred HHHH
Q 005499 651 RKAW 654 (693)
Q Consensus 651 ~~~~ 654 (693)
+.+.
T Consensus 461 ~~~~ 464 (765)
T PRK10049 461 PGVQ 464 (765)
T ss_pred HHHH
Confidence 8654
No 20
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.2e-26 Score=222.05 Aligned_cols=382 Identities=13% Similarity=0.100 Sum_probs=295.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Q 005499 274 VMEHLTYALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLAAKICS 353 (693)
Q Consensus 274 ~~~~l~~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~ 353 (693)
.+-..|+-+++.|+|++|+++|..++...|+++.-+-+++-||...|+|++.++...++++ ++|+.+.+++..+..+-
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHH
Confidence 4556788889999999999999999999988888888899999999999999999999999 67999999998888887
Q ss_pred hcCCcHHHHHHHH------------------HHHHHhh---------cCCCcchhHhHH---HHHHHHHhhhhcccCChH
Q 005499 354 EDCHLAAEGIQYA------------------RTALSNA---------QGKDEHLKGVGL---RMLGLCLGRHAKVSSSDY 403 (693)
Q Consensus 354 ~~~~~~~~A~~~~------------------~~al~~~---------~~~~~~~~~~~~---~~lg~~~~~~~~~~~~~~ 403 (693)
..|++. +|+.-. ++.+... ........+.+. ...|..............
T Consensus 195 ~lg~~~-eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~ 273 (606)
T KOG0547|consen 195 QLGKFD-EALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKS 273 (606)
T ss_pred hhccHH-HHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCC
Confidence 777776 654322 1221110 000000001111 011111100000000000
Q ss_pred H-HhHHHH---------------HHHHHHHHHHh-----cCCC--C------hHHHHHH-----HhCCHHHHHHHHHHHH
Q 005499 404 E-RSRLQS---------------EALKSLDGAST-----FENN--N------ADLFFDL-----EQRNLSTALRYAKQYI 449 (693)
Q Consensus 404 ~-~~~~~~---------------~A~~~~~~al~-----~~p~--~------~~~~~~l-----~~~~~~~A~~~~~~al 449 (693)
. ...... +|...+.+... ...+ + ..++... ..|++..|...|+.++
T Consensus 274 ~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I 353 (606)
T KOG0547|consen 274 DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAI 353 (606)
T ss_pred ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHH
Confidence 0 111112 22222222221 0111 1 1111111 7899999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhh
Q 005499 450 DATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKS 529 (693)
Q Consensus 450 ~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 529 (693)
.++|.+. ..+..++.+|....+.++-...|+++.+++| .++++|+..|.+..-++++++|+.-|+++++++|.+
T Consensus 354 ~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp--~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~--- 427 (606)
T KOG0547|consen 354 KLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDP--ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPEN--- 427 (606)
T ss_pred hcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCC--CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhh---
Confidence 9999998 8899999999999999999999999999999 899999999999999999999999999999998555
Q ss_pred cCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 005499 530 FGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALL 609 (693)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 609 (693)
+..+..++.+..++++++++...|+.+.+..|..++++...|.++..++++++|++.|.+++.
T Consensus 428 -----------------~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 428 -----------------AYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred -----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 789999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCC------ChhHHHHHHHHHHH-hCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhccc
Q 005499 610 IEPS------YVPCKVLVGSLFSK-LGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASMLEE 682 (693)
Q Consensus 610 ~~p~------~~~~~~~la~~~~~-~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 682 (693)
+.|. ++..+..-|.+..+ .+++. .|+.+++++++++|.+..++..||.+..++|+.++|+++|+++..+..
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~--~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQWKEDIN--QAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred hccccccccccchhhhhhhHhhhchhhhHH--HHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 9998 66667777766655 34545 999999999999999999999999999999999999999999988754
Q ss_pred C
Q 005499 683 S 683 (693)
Q Consensus 683 ~ 683 (693)
+
T Consensus 569 t 569 (606)
T KOG0547|consen 569 T 569 (606)
T ss_pred h
Confidence 3
No 21
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.95 E-value=5.5e-25 Score=244.59 Aligned_cols=463 Identities=12% Similarity=0.044 Sum_probs=328.9
Q ss_pred chhhhhcccCCcCHHHHHHHhhhccC--C--CHHHHHHHHHHHHhhcCCHHHHHhhhccCCcchhhhhccccchhhhhhh
Q 005499 26 KAAEVEAKLDEGNIQEAESSLREGLS--L--NFEEARALLGRLEYQRGNVEGALRVFDGIDLHAAIQRLQPSFSEKSASK 101 (693)
Q Consensus 26 ~~~~~~~~~~~g~~~~A~~~~~~~l~--~--~~~~a~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (693)
.......+...|++++|...|+.+.. + .+..++..+...+.+.++++.|..++..+...++.++.
T Consensus 90 ~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~----------- 158 (697)
T PLN03081 90 LCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQ----------- 158 (697)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcch-----------
Confidence 34445567778999999999988762 1 23456667778888899999999999876544433321
Q ss_pred ccCCCCCCCccchhhHHHHHHHHHHHHHHHhHhhCChHHHHHHHHHHHHHHHHhhhcCCCChhhhhhHHHHHHHHHhhhH
Q 005499 102 KCRSRSDSHVSVSQHAASLVLEAIYLKAKSLQKLGRLTEAANECKSVLDAVERIFQQGIPDAQVDNRLQETVSRAVELLP 181 (693)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~ 181 (693)
..+..+..+|.+.|++++|.+.|+.+.+ |+.. ++..+.
T Consensus 159 ---------------------~~~n~Li~~y~k~g~~~~A~~lf~~m~~----------~~~~-----------t~n~li 196 (697)
T PLN03081 159 ---------------------YMMNRVLLMHVKCGMLIDARRLFDEMPE----------RNLA-----------SWGTII 196 (697)
T ss_pred ---------------------HHHHHHHHHHhcCCCHHHHHHHHhcCCC----------CCee-----------eHHHHH
Confidence 3456667899999999999999987632 3333 455567
Q ss_pred HHHhhcCCchHHHHHHHHHhcccCCCChhHHHHHHHHHHHHhhhcccccCCCCCcCCCCCcccCCChhHHHHHHHHHHHH
Q 005499 182 ELWKQVGCDHDALAAYRRAVLSQWNLDNECCARIQKRFAVFLLHSGVEAGPPSLGSQVEGSYAPKNNLEEAILLLLILMK 261 (693)
Q Consensus 182 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 261 (693)
..|.+.|++++|+..|++|+..++.|+..++..+... +...+..+++..+......
T Consensus 197 ~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a------------------------~~~~~~~~~~~~l~~~~~~ 252 (697)
T PLN03081 197 GGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRA------------------------SAGLGSARAGQQLHCCVLK 252 (697)
T ss_pred HHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHH------------------------HhcCCcHHHHHHHHHHHHH
Confidence 7899999999999999999999888888877665332 2233555566555433322
Q ss_pred HHhhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCC
Q 005499 262 KYHLGKIKWDPAVMEHLTYALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPND 341 (693)
Q Consensus 262 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~ 341 (693)
.....+..+++.|...|.++|+++.|.+.|+++.+ .+..+|..+...|.+.|++++|+.+|+++...+..|+.
T Consensus 253 ----~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~ 325 (697)
T PLN03081 253 ----TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE---KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ 325 (697)
T ss_pred ----hCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 23345778999999999999999999999998754 47789999999999999999999999999887666665
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHh
Q 005499 342 LMALLLAAKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGAST 421 (693)
Q Consensus 342 ~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 421 (693)
. .+..+...|...+... +|.+.+..+++.....+ ...+..+...|.+.|+. ++|...|+++.+
T Consensus 326 ~-t~~~ll~a~~~~g~~~-~a~~i~~~m~~~g~~~d----~~~~~~Li~~y~k~G~~-----------~~A~~vf~~m~~ 388 (697)
T PLN03081 326 F-TFSIMIRIFSRLALLE-HAKQAHAGLIRTGFPLD----IVANTALVDLYSKWGRM-----------EDARNVFDRMPR 388 (697)
T ss_pred H-HHHHHHHHHHhccchH-HHHHHHHHHHHhCCCCC----eeehHHHHHHHHHCCCH-----------HHHHHHHHhCCC
Confidence 4 4555556777788877 89999988888653222 56788889999999999 999999887642
Q ss_pred cCCCChHHHHHHHhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHH
Q 005499 422 FENNNADLFFDLEQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAK 501 (693)
Q Consensus 422 ~~p~~~~~~~~l~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 501 (693)
| +. .+|..+...|.+.|+.++|+++|+++.+.... .+...+..+..
T Consensus 389 -------------------------------~-d~-~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~-Pd~~T~~~ll~ 434 (697)
T PLN03081 389 -------------------------------K-NL-ISWNALIAGYGNHGRGTKAVEMFERMIAEGVA-PNHVTFLAVLS 434 (697)
T ss_pred -------------------------------C-Ce-eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CCHHHHHHHHH
Confidence 1 22 56666777777777777777777776654321 24555666666
Q ss_pred HHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCH
Q 005499 502 LKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSA 581 (693)
Q Consensus 502 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 581 (693)
.+...|..++|.++|+.+.+..+- ..+...|..+..++.+.|++++|.+.++++- ..| +.
T Consensus 435 a~~~~g~~~~a~~~f~~m~~~~g~------------------~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~p-~~ 494 (697)
T PLN03081 435 ACRYSGLSEQGWEIFQSMSENHRI------------------KPRAMHYACMIELLGREGLLDEAYAMIRRAP-FKP-TV 494 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHhcCC------------------CCCccchHhHHHHHHhcCCHHHHHHHHHHCC-CCC-CH
Confidence 667777777777777766654211 1223456666777777777777777666531 222 34
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q 005499 582 EMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALR 645 (693)
Q Consensus 582 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~ 645 (693)
.+|..+...+...|+++.|...+++.+.+.|++...+..+..+|.+.|+++ +|.+.++.+.+
T Consensus 495 ~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~--~A~~v~~~m~~ 556 (697)
T PLN03081 495 NMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQA--EAAKVVETLKR 556 (697)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHH--HHHHHHHHHHH
Confidence 556666666777777777777777777777776666777777777777766 77777766654
No 22
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=5.4e-26 Score=226.99 Aligned_cols=289 Identities=19% Similarity=0.205 Sum_probs=258.0
Q ss_pred cCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCCh---HHHH
Q 005499 355 DCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNA---DLFF 431 (693)
Q Consensus 355 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~ 431 (693)
.-+.. +|+..+.+.-...+ +. .+++..+|..|+..+++ ++|..+|+.+-+..|-.. +++.
T Consensus 332 ~y~~~-~A~~~~~klp~h~~---nt--~wvl~q~GrayFEl~~Y-----------~~a~~~F~~~r~~~p~rv~~meiyS 394 (638)
T KOG1126|consen 332 QYNCR-EALNLFEKLPSHHY---NT--GWVLSQLGRAYFELIEY-----------DQAERIFSLVRRIEPYRVKGMEIYS 394 (638)
T ss_pred HHHHH-HHHHHHHhhHHhcC---Cc--hHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhhccccccchhHHH
Confidence 33444 78888877433333 33 68999999999999999 999999999999988543 3332
Q ss_pred HH--HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCCh
Q 005499 432 DL--EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALP 509 (693)
Q Consensus 432 ~l--~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~ 509 (693)
.. ...+--+--...+..++.+|..+ ++|..+|.+|.-+++++.|+++|++++.++| ....++..+|.=+.....+
T Consensus 395 T~LWHLq~~v~Ls~Laq~Li~~~~~sP-esWca~GNcfSLQkdh~~Aik~f~RAiQldp--~faYayTLlGhE~~~~ee~ 471 (638)
T KOG1126|consen 395 TTLWHLQDEVALSYLAQDLIDTDPNSP-ESWCALGNCFSLQKDHDTAIKCFKRAIQLDP--RFAYAYTLLGHESIATEEF 471 (638)
T ss_pred HHHHHHHhhHHHHHHHHHHHhhCCCCc-HHHHHhcchhhhhhHHHHHHHHHHHhhccCC--ccchhhhhcCChhhhhHHH
Confidence 22 33333333344566778899999 9999999999999999999999999999999 8999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 005499 510 MDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGV 589 (693)
Q Consensus 510 ~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 589 (693)
|.|..+|+.++..+|.+ ..+|+.+|.+|.++++++.|.-.|++|+.++|.+......+|.
T Consensus 472 d~a~~~fr~Al~~~~rh--------------------YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~ 531 (638)
T KOG1126|consen 472 DKAMKSFRKALGVDPRH--------------------YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGR 531 (638)
T ss_pred HhHHHHHHhhhcCCchh--------------------hHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhH
Confidence 99999999999998666 6999999999999999999999999999999999999999999
Q ss_pred HHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHH
Q 005499 590 MHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIAD 669 (693)
Q Consensus 590 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 669 (693)
++.+.|+.++|+..|++|+.++|.++-..+..|.++..+++++ +|+..+++..++-|++..+++.+|.+|...|+.+.
T Consensus 532 ~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~--eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~ 609 (638)
T KOG1126|consen 532 IQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYV--EALQELEELKELVPQESSVFALLGKIYKRLGNTDL 609 (638)
T ss_pred HHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchH--HHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchH
Confidence 9999999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCC
Q 005499 670 AADCFQAASMLEESDP 685 (693)
Q Consensus 670 A~~~~~~al~l~p~~~ 685 (693)
|+..|.-|.+++|.-.
T Consensus 610 Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 610 ALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHhhHHHhcCCCccc
Confidence 9999999999999644
No 23
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.94 E-value=3.3e-22 Score=223.88 Aligned_cols=379 Identities=13% Similarity=0.022 Sum_probs=165.4
Q ss_pred ccCCChhHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhcCC---CCCcHHHHHHHHHHHHHC
Q 005499 243 YAPKNNLEEAILLLLILMKKYHLGKIKWDPAVMEHLTYALSLCSQTSILAKQLEEIMPG---VFLRSDRWNALALCYSAI 319 (693)
Q Consensus 243 ~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~e~~l~~---~~~~~~~~~~la~~~~~~ 319 (693)
|++.|++++|+.++..+... ...++..+|+.+...+++.|+++.|.+.|+++... ..++..+|..+..+|.+.
T Consensus 517 y~k~G~~eeAl~lf~~M~~~----Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~ 592 (1060)
T PLN03218 517 CARAGQVAKAFGAYGIMRSK----NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA 592 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHC
Confidence 34444455554444333221 11233444555555555555555555555444321 122334444455555555
Q ss_pred CCcHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhccc
Q 005499 320 GQNDAALNLLRKSLHKHERPNDLMALLLAAKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVS 399 (693)
Q Consensus 320 g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~ 399 (693)
|++++|.++|+++.+.+..| +...+..+...|.+.++.. +|..++.++....-.. . ...|..+...+...|+.
T Consensus 593 G~ldeA~elf~~M~e~gi~p-~~~tynsLI~ay~k~G~~d-eAl~lf~eM~~~Gv~P--D--~~TynsLI~a~~k~G~~- 665 (1060)
T PLN03218 593 GQVDRAKEVYQMIHEYNIKG-TPEVYTIAVNSCSQKGDWD-FALSIYDDMKKKGVKP--D--EVFFSALVDVAGHAGDL- 665 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHH-HHHHHHHHHHHcCCCC--C--HHHHHHHHHHHHhCCCH-
Confidence 55555555555554432222 2223333333444444444 5555554444432111 1 33444444445555555
Q ss_pred CChHHHhHHHHHHHHHHHHHHhcCC-CChHHHHHH-----HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCh
Q 005499 400 SSDYERSRLQSEALKSLDGASTFEN-NNADLFFDL-----EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRF 473 (693)
Q Consensus 400 ~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l-----~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~ 473 (693)
++|.+.|..+.+... .+..++..+ ..|++++|...|+++...........|..+...|.+.|++
T Consensus 666 ----------eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~ 735 (1060)
T PLN03218 666 ----------DKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQL 735 (1060)
T ss_pred ----------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 555555554443321 112222222 4444444444444443321111113444444444444444
Q ss_pred HHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHH
Q 005499 474 SEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGL 553 (693)
Q Consensus 474 ~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 553 (693)
++|+++|+++....-. .+...+..+...+...|++++|..++.++.+... ..+..++..+
T Consensus 736 eeAlelf~eM~~~Gi~-Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi-------------------~pd~~tynsL 795 (1060)
T PLN03218 736 PKALEVLSEMKRLGLC-PNTITYSILLVASERKDDADVGLDLLSQAKEDGI-------------------KPNLVMCRCI 795 (1060)
T ss_pred HHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-------------------CCCHHHHHHH
Confidence 4444444444332110 1333444444444444444444444444443310 0111222222
Q ss_pred HHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCChhHHHHHHHHHHHhCCC
Q 005499 554 ANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIE--PSYVPCKVLVGSLFSKLGPK 631 (693)
Q Consensus 554 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~ 631 (693)
...+. +++++|....+..+..++. ......+..++|+.+|+++++.. |+. ..+..+-.++...+..
T Consensus 796 Iglc~--~~y~ka~~l~~~v~~f~~g---------~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~-~T~~~vL~cl~~~~~~ 863 (1060)
T PLN03218 796 TGLCL--RRFEKACALGEPVVSFDSG---------RPQIENKWTSWALMVYRETISAGTLPTM-EVLSQVLGCLQLPHDA 863 (1060)
T ss_pred HHHHH--HHHHHHhhhhhhhhhhhcc---------ccccccchHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccccH
Confidence 11111 1233333332222221111 11111223467888999888753 553 3444444566666666
Q ss_pred ChHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhc
Q 005499 632 ALPVARSLLSDALRIEPT--NRKAWYYLGLVHKDDGRI-ADAADCFQAASML 680 (693)
Q Consensus 632 ~l~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~l 680 (693)
. .+..+++... ..|. +...+..+-..+ |++ ++|...|+.+..+
T Consensus 864 ~--~~~~m~~~m~-~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~ 909 (1060)
T PLN03218 864 T--LRNRLIENLG-ISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASL 909 (1060)
T ss_pred H--HHHHHHHHhc-cCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHc
Confidence 6 7777765532 3333 344555554443 443 5899999999884
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.94 E-value=1.2e-22 Score=221.26 Aligned_cols=475 Identities=10% Similarity=-0.038 Sum_probs=345.8
Q ss_pred CCCHHHHHHHHHHHHhhcCCHHHHHhhhccCCcchhhhhccccchhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHH
Q 005499 51 SLNFEEARALLGRLEYQRGNVEGALRVFDGIDLHAAIQRLQPSFSEKSASKKCRSRSDSHVSVSQHAASLVLEAIYLKAK 130 (693)
Q Consensus 51 ~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 130 (693)
.|+.++..+..+.+.+++|+|+.|+..|+++.... |...+ +.+-.+.
T Consensus 30 ~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~-------------------------------av~dll~ 76 (822)
T PRK14574 30 NPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSG-------------------------------QVDDWLQ 76 (822)
T ss_pred CccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchh-------------------------------hHHHHHH
Confidence 67788888999999999999999999998864221 11110 0113344
Q ss_pred HhHhhCChHHHHHHHHHHHHHHHHhhhcCCCChhhhhhHHHHHHHHHhhhHHHHhhcCCchHHHHHHHHHhcccCCCChh
Q 005499 131 SLQKLGRLTEAANECKSVLDAVERIFQQGIPDAQVDNRLQETVSRAVELLPELWKQVGCDHDALAAYRRAVLSQWNLDNE 210 (693)
Q Consensus 131 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 210 (693)
++...|+.++|+..++++++ |.... ..++..++.+|..+|++++|+..|+++++.
T Consensus 77 l~~~~G~~~~A~~~~eka~~----------p~n~~--------~~~llalA~ly~~~gdyd~Aiely~kaL~~------- 131 (822)
T PRK14574 77 IAGWAGRDQEVIDVYERYQS----------SMNIS--------SRGLASAARAYRNEKRWDQALALWQSSLKK------- 131 (822)
T ss_pred HHHHcCCcHHHHHHHHHhcc----------CCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------
Confidence 55566999999988888762 11110 013334466888889999999999888874
Q ss_pred HHHHHHHHHHHHhhhcccccCCCCCcCCCCCcccCCChhHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHhcCCHHH
Q 005499 211 CCARIQKRFAVFLLHSGVEAGPPSLGSQVEGSYAPKNNLEEAILLLLILMKKYHLGKIKWDPAVMEHLTYALSLCSQTSI 290 (693)
Q Consensus 211 ~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 290 (693)
.|.++.++..++..+...++.++
T Consensus 132 ---------------------------------------------------------dP~n~~~l~gLa~~y~~~~q~~e 154 (822)
T PRK14574 132 ---------------------------------------------------------DPTNPDLISGMIMTQADAGRGGV 154 (822)
T ss_pred ---------------------------------------------------------CCCCHHHHHHHHHHHhhcCCHHH
Confidence 25566666677788888899999
Q ss_pred HHHHHHhhcCCCCCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 005499 291 LAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLAAKICSEDCHLAAEGIQYARTAL 370 (693)
Q Consensus 291 a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al 370 (693)
|++.++++.+..|..... ..++..+...++..+|+..+++++. .+|++...+..+..+....+-.. .|.+..++--
T Consensus 155 Al~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~--~~P~n~e~~~~~~~~l~~~~~~~-~a~~l~~~~p 230 (822)
T PRK14574 155 VLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVR--LAPTSEEVLKNHLEILQRNRIVE-PALRLAKENP 230 (822)
T ss_pred HHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcH-HHHHHHHhCc
Confidence 999999998888764333 4455555557777779999999999 56999988888887777777666 6665554422
Q ss_pred HhhcCCCcchhHhHHHHHHHHHhhhhc-ccCChHHHhHHHHHHHHHHHHHHhcCCCCh---HHHHHH---------HhCC
Q 005499 371 SNAQGKDEHLKGVGLRMLGLCLGRHAK-VSSSDYERSRLQSEALKSLDGASTFENNNA---DLFFDL---------EQRN 437 (693)
Q Consensus 371 ~~~~~~~~~~~~~~~~~lg~~~~~~~~-~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l---------~~~~ 437 (693)
.... .....+.....+.-..+.+. ...+..+|....+.|+..+++.+...|..| ..+... ..++
T Consensus 231 ~~f~---~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r 307 (822)
T PRK14574 231 NLVS---AEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQ 307 (822)
T ss_pred cccC---HHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhh
Confidence 2111 00001111111111111121 122335677777999999999887443333 222222 8899
Q ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCC----CCchHHHHHHHHHHHHhCChhHHH
Q 005499 438 LSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTK----WEQGPILRLKAKLKIAQALPMDAI 513 (693)
Q Consensus 438 ~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~l~~~~~~~g~~~~A~ 513 (693)
+.+++..|+.+......-+..+....|..|...++.++|+.+|.+++...|. .........|...+...+++++|.
T Consensus 308 ~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~ 387 (822)
T PRK14574 308 TADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAY 387 (822)
T ss_pred HHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHH
Confidence 9999999999876653333378889999999999999999999999886531 023333567888999999999999
Q ss_pred HHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 005499 514 ETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEG 593 (693)
Q Consensus 514 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 593 (693)
.+++++.+..|.....++.-. ....|+-......++.++...|++.+|.+.+++.+...|.++.++..+|.++..
T Consensus 388 ~~l~~~~~~~p~~~~~~~~~~-----~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~ 462 (822)
T PRK14574 388 QFAVNYSEQTPYQVGVYGLPG-----KEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLA 462 (822)
T ss_pred HHHHHHHhcCCcEEeccCCCC-----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 999999876552111111000 122345567888899999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHH
Q 005499 594 CGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAW 654 (693)
Q Consensus 594 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~ 654 (693)
.|.+.+|...++.+..++|++..+...+|.++..+|++. +|.....++++..|+++.+.
T Consensus 463 Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~--~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 463 RDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWH--QMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred cCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHH--HHHHHHHHHHhhCCCchhHH
Confidence 999999999999999999999999999999999999999 99999999999999998553
No 25
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=2.5e-25 Score=222.27 Aligned_cols=302 Identities=14% Similarity=0.111 Sum_probs=245.5
Q ss_pred HHHHHHHHHHHhcC--CHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHHHH
Q 005499 273 AVMEHLTYALSLCS--QTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLAAK 350 (693)
Q Consensus 273 ~~~~~l~~~~~~~g--~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~ 350 (693)
+++..++..|...- +..+|+..|++.....++..-...++|..|+..++|++|..+|+.+-+ .+|-.+...-....
T Consensus 318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~--~~p~rv~~meiyST 395 (638)
T KOG1126|consen 318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRR--IEPYRVKGMEIYST 395 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccccccchhHHHH
Confidence 35556666665444 456899999996666777776777899999999999999999999988 45876555444444
Q ss_pred HHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChHHH
Q 005499 351 ICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNADLF 430 (693)
Q Consensus 351 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 430 (693)
+.....+.. +---+.+..++.+| .. +.+|..+|.||..++++ +.|+.+|++|++++|...-++
T Consensus 396 ~LWHLq~~v-~Ls~Laq~Li~~~~---~s--PesWca~GNcfSLQkdh-----------~~Aik~f~RAiQldp~faYay 458 (638)
T KOG1126|consen 396 TLWHLQDEV-ALSYLAQDLIDTDP---NS--PESWCALGNCFSLQKDH-----------DTAIKCFKRAIQLDPRFAYAY 458 (638)
T ss_pred HHHHHHhhH-HHHHHHHHHHhhCC---CC--cHHHHHhcchhhhhhHH-----------HHHHHHHHHhhccCCccchhh
Confidence 444333333 33334556666666 44 88899999999999999 999999999999999887666
Q ss_pred HHH-----HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHH
Q 005499 431 FDL-----EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIA 505 (693)
Q Consensus 431 ~~l-----~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 505 (693)
.-+ ....++.|..+|+.++..+|.+. .+|+.+|.+|.++++++.|+-.|++|++++| .+..+...+|.++.+
T Consensus 459 TLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY-nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP--~nsvi~~~~g~~~~~ 535 (638)
T KOG1126|consen 459 TLLGHESIATEEFDKAMKSFRKALGVDPRHY-NAWYGLGTVYLKQEKLEFAEFHFQKAVEINP--SNSVILCHIGRIQHQ 535 (638)
T ss_pred hhcCChhhhhHHHHhHHHHHHhhhcCCchhh-HHHHhhhhheeccchhhHHHHHHHhhhcCCc--cchhHHhhhhHHHHH
Confidence 655 77888899999999999999888 8999999999999999999999999999999 788888888888888
Q ss_pred hCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHH
Q 005499 506 QALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLH 585 (693)
Q Consensus 506 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 585 (693)
.|+.++|+.+|++|+.++|.+ +...+..|.+++..+++++|+..+++..++.|++..+++
T Consensus 536 ~k~~d~AL~~~~~A~~ld~kn--------------------~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~ 595 (638)
T KOG1126|consen 536 LKRKDKALQLYEKAIHLDPKN--------------------PLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFA 595 (638)
T ss_pred hhhhhHHHHHHHHHHhcCCCC--------------------chhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHH
Confidence 899999999999888887544 577888888888888888898888888888888888888
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 005499 586 TEGVMHEGCGQTHEALRAYINALLIEPSYVP 616 (693)
Q Consensus 586 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 616 (693)
.+|.+|.+.|+.+.|+..|.-|..++|.-..
T Consensus 596 llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 596 LLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 8888888888888888888888888887554
No 26
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.94 E-value=6.8e-22 Score=221.34 Aligned_cols=503 Identities=10% Similarity=-0.012 Sum_probs=355.6
Q ss_pred HHHHHhhhccC-CCHHHHHHHHHHHHhhcCCHHHHHhhhccCCcchhhhhccccchhhhhhhccCCCCCCCccchhhHHH
Q 005499 41 EAESSLREGLS-LNFEEARALLGRLEYQRGNVEGALRVFDGIDLHAAIQRLQPSFSEKSASKKCRSRSDSHVSVSQHAAS 119 (693)
Q Consensus 41 ~A~~~~~~~l~-~~~~~a~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (693)
.+....+..++ ..+...+..+=..+.+.|++++|+++|+++...+..+...
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~---------------------------- 406 (1060)
T PLN03218 355 NSLAAYNGGVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDK---------------------------- 406 (1060)
T ss_pred hhHHHhccccCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchH----------------------------
Confidence 33444555552 2333333444455668899999999999875443211100
Q ss_pred HHHHHHHHHHHHhHhhCChHHHHHHHHHHHHHHHHhhhcCCCChhhhhhHHHHHHHHHhhhHHHHhhcCCchHHHHHHHH
Q 005499 120 LVLEAIYLKAKSLQKLGRLTEAANECKSVLDAVERIFQQGIPDAQVDNRLQETVSRAVELLPELWKQVGCDHDALAAYRR 199 (693)
Q Consensus 120 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~ 199 (693)
-.+...-..+.+.|..++|...|+.+.. |+.. .+..+...+++.|++++|...|++
T Consensus 407 ---v~~~~li~~~~~~g~~~eAl~lf~~M~~----------pd~~-----------Tyn~LL~a~~k~g~~e~A~~lf~~ 462 (1060)
T PLN03218 407 ---IYHAKFFKACKKQRAVKEAFRFAKLIRN----------PTLS-----------TFNMLMSVCASSQDIDGALRVLRL 462 (1060)
T ss_pred ---HHHHHHHHHHHHCCCHHHHHHHHHHcCC----------CCHH-----------HHHHHHHHHHhCcCHHHHHHHHHH
Confidence 0112223456778999999988766521 4433 444555678899999999999999
Q ss_pred HhcccCCCChhHHHHHHHHHHHHhhhcccccCCCCCcCCCCCcccCCChhHHHHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 005499 200 AVLSQWNLDNECCARIQKRFAVFLLHSGVEAGPPSLGSQVEGSYAPKNNLEEAILLLLILMKKYHLGKIKWDPAVMEHLT 279 (693)
Q Consensus 200 ~l~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~~l~ 279 (693)
|.+.++.||..++..+. ..|++.|+.++|..++..+... ....+...|+.+.
T Consensus 463 M~~~Gl~pD~~tynsLI------------------------~~y~k~G~vd~A~~vf~eM~~~----Gv~PdvvTynaLI 514 (1060)
T PLN03218 463 VQEAGLKADCKLYTTLI------------------------STCAKSGKVDAMFEVFHEMVNA----GVEANVHTFGALI 514 (1060)
T ss_pred HHHcCCCCCHHHHHHHH------------------------HHHHhCcCHHHHHHHHHHHHHc----CCCCCHHHHHHHH
Confidence 99998888887776652 2577788999999888766432 3356788999999
Q ss_pred HHHHhcCCHHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhh--ccCCCCCHHHHHHHHHHHHhcC
Q 005499 280 YALSLCSQTSILAKQLEEIMPG-VFLRSDRWNALALCYSAIGQNDAALNLLRKSLH--KHERPNDLMALLLAAKICSEDC 356 (693)
Q Consensus 280 ~~~~~~g~~~~a~~~~e~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~~~p~~~~~~~~~a~~~~~~~ 356 (693)
..|++.|++++|.+.|+++... ..++..+|..+...+.+.|++++|..+|.++.. .+..|+. ..+..+...|.+.+
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~-vTynaLI~ay~k~G 593 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH-ITVGALMKACANAG 593 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHCC
Confidence 9999999999999999988643 345778899999999999999999999999975 2234654 44455555777888
Q ss_pred CcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhc--CCCChHHHHHH-
Q 005499 357 HLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTF--ENNNADLFFDL- 433 (693)
Q Consensus 357 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l- 433 (693)
+.. +|.++++.+.+..... . ...|..+...|.+.|+. ++|+..|.++... .|+ ..++..+
T Consensus 594 ~ld-eA~elf~~M~e~gi~p--~--~~tynsLI~ay~k~G~~-----------deAl~lf~eM~~~Gv~PD-~~TynsLI 656 (1060)
T PLN03218 594 QVD-RAKEVYQMIHEYNIKG--T--PEVYTIAVNSCSQKGDW-----------DFALSIYDDMKKKGVKPD-EVFFSALV 656 (1060)
T ss_pred CHH-HHHHHHHHHHHcCCCC--C--hHHHHHHHHHHHhcCCH-----------HHHHHHHHHHHHcCCCCC-HHHHHHHH
Confidence 887 9999999988864322 2 67889999999999999 9999999998865 343 3333333
Q ss_pred ----HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCCh
Q 005499 434 ----EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALP 509 (693)
Q Consensus 434 ----~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~ 509 (693)
..|++++|...+..+.+........++..+...|.+.|++++|..+|+++...... .+...|..+...+.+.|++
T Consensus 657 ~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~-PdvvtyN~LI~gy~k~G~~ 735 (1060)
T PLN03218 657 DVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR-PTVSTMNALITALCEGNQL 735 (1060)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHCCCH
Confidence 78999999999999888653332278888999999999999999999987664321 3677889999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC--CCCHHHHHHH
Q 005499 510 MDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELK--AYSAEMLHTE 587 (693)
Q Consensus 510 ~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l 587 (693)
++|+++|+++.... . ..+..+|..+...+.+.|++++|..++.++.+.. |+ ..++..+
T Consensus 736 eeAlelf~eM~~~G------------------i-~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd-~~tynsL 795 (1060)
T PLN03218 736 PKALEVLSEMKRLG------------------L-CPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPN-LVMCRCI 795 (1060)
T ss_pred HHHHHHHHHHHHcC------------------C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Confidence 99999999887542 1 2335678888889999999999999999988753 33 3333333
Q ss_pred HHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcC
Q 005499 588 GVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRI--EPTNRKAWYYLGLVHKDDG 665 (693)
Q Consensus 588 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g 665 (693)
-.++. +++++|....+..+..++.+.. ...+..+ +|..+|+++++. .|+ ..++..+-.++...+
T Consensus 796 Iglc~--~~y~ka~~l~~~v~~f~~g~~~---------~~n~w~~--~Al~lf~eM~~~Gi~Pd-~~T~~~vL~cl~~~~ 861 (1060)
T PLN03218 796 TGLCL--RRFEKACALGEPVVSFDSGRPQ---------IENKWTS--WALMVYRETISAGTLPT-MEVLSQVLGCLQLPH 861 (1060)
T ss_pred HHHHH--HHHHHHhhhhhhhhhhhccccc---------cccchHH--HHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccc
Confidence 22221 3567776666655554432221 1122334 899999999884 355 445555445666777
Q ss_pred ChHHHHHHHHH
Q 005499 666 RIADAADCFQA 676 (693)
Q Consensus 666 ~~~~A~~~~~~ 676 (693)
....+...++.
T Consensus 862 ~~~~~~~m~~~ 872 (1060)
T PLN03218 862 DATLRNRLIEN 872 (1060)
T ss_pred cHHHHHHHHHH
Confidence 77777666654
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.94 E-value=2.7e-22 Score=218.54 Aligned_cols=377 Identities=10% Similarity=-0.057 Sum_probs=299.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Q 005499 274 VMEHLTYALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLAAKICS 353 (693)
Q Consensus 274 ~~~~l~~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~ 353 (693)
....++..+...|+++.|++.|+++++..|+++.++..++..+...|+.++|+..++++.. .+|.+... ..++.++.
T Consensus 104 ~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~--~dp~~~~~-l~layL~~ 180 (822)
T PRK14574 104 GLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAE--RDPTVQNY-MTLSYLNR 180 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc--cCcchHHH-HHHHHHHH
Confidence 3344467889999999999999999999999999999999999999999999999999999 56886665 55566666
Q ss_pred hcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChHHHHHH
Q 005499 354 EDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNADLFFDL 433 (693)
Q Consensus 354 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 433 (693)
..++.. +|+..++++++..| .. ...+..+..++...|-. ..|.+...+--.........+...
T Consensus 181 ~~~~~~-~AL~~~ekll~~~P---~n--~e~~~~~~~~l~~~~~~-----------~~a~~l~~~~p~~f~~~~~~~l~~ 243 (822)
T PRK14574 181 ATDRNY-DALQASSEAVRLAP---TS--EEVLKNHLEILQRNRIV-----------EPALRLAKENPNLVSAEHYRQLER 243 (822)
T ss_pred hcchHH-HHHHHHHHHHHhCC---CC--HHHHHHHHHHHHHcCCc-----------HHHHHHHHhCccccCHHHHHHHHH
Confidence 667777 79999999999998 44 66677777788888887 777766554221111111111111
Q ss_pred ----------------HhC---CHHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhcC
Q 005499 434 ----------------EQR---NLSTALRYAKQYIDATGGSV------LKGWKLLALVLSAQQRFSEAEVVTDAALDETT 488 (693)
Q Consensus 434 ----------------~~~---~~~~A~~~~~~al~~~p~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 488 (693)
... -.+.|+..+++++...|..+ ..+..-.-.++...|++.+++..|+.+.....
T Consensus 244 ~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~ 323 (822)
T PRK14574 244 DAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGY 323 (822)
T ss_pred HHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCC
Confidence 111 34667888888887544333 12233445567788999999999999776552
Q ss_pred CCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHH
Q 005499 489 KWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAI 568 (693)
Q Consensus 489 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 568 (693)
+ -...+....|..|...+++++|+.+|++++...|... ..+........|..+|...+++++|..
T Consensus 324 ~-~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~--------------~~~~~~~~~~~L~yA~ld~e~~~~A~~ 388 (822)
T PRK14574 324 K-MPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTF--------------RNSDDLLDADDLYYSLNESEQLDKAYQ 388 (822)
T ss_pred C-CCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccccc--------------CCCcchHHHHHHHHHHHhcccHHHHHH
Confidence 1 3456788899999999999999999999987653210 012234445678889999999999999
Q ss_pred HHHHHHhhCC---------------CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCCh
Q 005499 569 CMGKARELKA---------------YSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKAL 633 (693)
Q Consensus 569 ~~~~al~~~p---------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l 633 (693)
++++.....| +-......++.++...|++.+|.+.+++.+...|.++..+..+|.++...|.+.
T Consensus 389 ~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~- 467 (822)
T PRK14574 389 FAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPR- 467 (822)
T ss_pred HHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH-
Confidence 9999987544 224567788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCC
Q 005499 634 PVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASMLEESDPIE 687 (693)
Q Consensus 634 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 687 (693)
+|+..++.+..++|++..+...+|.++..+|++.+|.....++++..|+++.+
T Consensus 468 -~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 468 -KAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred -HHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 99999999999999999999999999999999999999999999999999853
No 28
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.94 E-value=5.6e-23 Score=228.60 Aligned_cols=457 Identities=13% Similarity=-0.024 Sum_probs=371.6
Q ss_pred HHHHHHHhHhhCChHHHHHHHHHHHHHHHHhhhcCC-CChhhhhhHHHHHHHHHhhhHHHHhhcCCchHHHHHHHHHhcc
Q 005499 125 IYLKAKSLQKLGRLTEAANECKSVLDAVERIFQQGI-PDAQVDNRLQETVSRAVELLPELWKQVGCDHDALAAYRRAVLS 203 (693)
Q Consensus 125 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~~l~~ 203 (693)
+......+.+.|++++|.+.|+.+... .+. ++.. .+..+...+.+.++.+.|...+..+...
T Consensus 90 ~~~~i~~l~~~g~~~~Al~~f~~m~~~------~~~~~~~~-----------t~~~ll~a~~~~~~~~~a~~l~~~m~~~ 152 (697)
T PLN03081 90 LCSQIEKLVACGRHREALELFEILEAG------CPFTLPAS-----------TYDALVEACIALKSIRCVKAVYWHVESS 152 (697)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhc------CCCCCCHH-----------HHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 444556788899999999999876431 011 3333 3444556678899999999999999998
Q ss_pred cCCCChhHHHHHHHHHHHHhhhcccccCCCCCcCCCCCcccCCChhHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHH
Q 005499 204 QWNLDNECCARIQKRFAVFLLHSGVEAGPPSLGSQVEGSYAPKNNLEEAILLLLILMKKYHLGKIKWDPAVMEHLTYALS 283 (693)
Q Consensus 204 ~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~ 283 (693)
+..++..+++.+. ..|++.|.+++|..+|..+. ..+...|+.+...|.
T Consensus 153 g~~~~~~~~n~Li------------------------~~y~k~g~~~~A~~lf~~m~--------~~~~~t~n~li~~~~ 200 (697)
T PLN03081 153 GFEPDQYMMNRVL------------------------LMHVKCGMLIDARRLFDEMP--------ERNLASWGTIIGGLV 200 (697)
T ss_pred CCCcchHHHHHHH------------------------HHHhcCCCHHHHHHHHhcCC--------CCCeeeHHHHHHHHH
Confidence 8878877665542 36788899999998885431 246778999999999
Q ss_pred hcCCHHHHHHHHHhhcCCC-CCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHH
Q 005499 284 LCSQTSILAKQLEEIMPGV-FLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLAAKICSEDCHLAAEG 362 (693)
Q Consensus 284 ~~g~~~~a~~~~e~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A 362 (693)
+.|++++|.+.|+++.... .++..++..+..++...|....+..++..+.+.+..|+ ...+..+...+.+.|+.. +|
T Consensus 201 ~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d-~~~~n~Li~~y~k~g~~~-~A 278 (697)
T PLN03081 201 DAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGD-TFVSCALIDMYSKCGDIE-DA 278 (697)
T ss_pred HCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCcc-ceeHHHHHHHHHHCCCHH-HH
Confidence 9999999999999987543 35667888888999999999999999999988765554 445555667788888888 99
Q ss_pred HHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhc--CCCChHHHHHH-----Hh
Q 005499 363 IQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTF--ENNNADLFFDL-----EQ 435 (693)
Q Consensus 363 ~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l-----~~ 435 (693)
...+++... .. ..+|..+...|...|+. ++|++.|+++... .|+ ..++..+ ..
T Consensus 279 ~~vf~~m~~------~~--~vt~n~li~~y~~~g~~-----------~eA~~lf~~M~~~g~~pd-~~t~~~ll~a~~~~ 338 (697)
T PLN03081 279 RCVFDGMPE------KT--TVAWNSMLAGYALHGYS-----------EEALCLYYEMRDSGVSID-QFTFSIMIRIFSRL 338 (697)
T ss_pred HHHHHhCCC------CC--hhHHHHHHHHHHhCCCH-----------HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc
Confidence 988876532 22 67899999999999999 9999999999754 343 3344443 88
Q ss_pred CCHHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHH
Q 005499 436 RNLSTALRYAKQYIDAT-GGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIE 514 (693)
Q Consensus 436 ~~~~~A~~~~~~al~~~-p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~ 514 (693)
|++++|...+..+++.. +.+. .++..+...|.+.|++++|..+|+++.+ | +...|..+...|...|+.++|++
T Consensus 339 g~~~~a~~i~~~m~~~g~~~d~-~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~---d~~t~n~lI~~y~~~G~~~~A~~ 412 (697)
T PLN03081 339 ALLEHAKQAHAGLIRTGFPLDI-VANTALVDLYSKWGRMEDARNVFDRMPR--K---NLISWNALIAGYGNHGRGTKAVE 412 (697)
T ss_pred cchHHHHHHHHHHHHhCCCCCe-eehHHHHHHHHHCCCHHHHHHHHHhCCC--C---CeeeHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999886 4444 7899999999999999999999998754 3 56789999999999999999999
Q ss_pred HHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCC--CHHHHHHHHHHHH
Q 005499 515 TYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAY--SAEMLHTEGVMHE 592 (693)
Q Consensus 515 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~ 592 (693)
.|+++.+.. . ..+..++..+...+...|..++|..+|+.+.+..+- +...+..+..++.
T Consensus 413 lf~~M~~~g------------------~-~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~ 473 (697)
T PLN03081 413 MFERMIAEG------------------V-APNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG 473 (697)
T ss_pred HHHHHHHhC------------------C-CCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH
Confidence 999998753 1 334678899999999999999999999999864332 3457888999999
Q ss_pred HCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 005499 593 GCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAAD 672 (693)
Q Consensus 593 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 672 (693)
+.|++++|.+.++++ ...| +...|..+...+...|+.+ .|...+++.++..|++...+..++.+|...|++++|.+
T Consensus 474 r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~--~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~ 549 (697)
T PLN03081 474 REGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLE--LGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAK 549 (697)
T ss_pred hcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcH--HHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHH
Confidence 999999999998875 2334 3567999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHhcc
Q 005499 673 CFQAASMLE 681 (693)
Q Consensus 673 ~~~~al~l~ 681 (693)
.++...+..
T Consensus 550 v~~~m~~~g 558 (697)
T PLN03081 550 VVETLKRKG 558 (697)
T ss_pred HHHHHHHcC
Confidence 999887653
No 29
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.4e-23 Score=201.13 Aligned_cols=372 Identities=12% Similarity=0.041 Sum_probs=301.7
Q ss_pred CCCCcccCCChhHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHH
Q 005499 238 QVEGSYAPKNNLEEAILLLLILMKKYHLGKIKWDPAVMEHLTYALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYS 317 (693)
Q Consensus 238 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~ 317 (693)
..++-|+..++|++||..+ ...+...|+.|..|...+-+|...|++++.++.-.+++..+|+...+++..+.++-
T Consensus 120 ~~GN~~f~~kkY~eAIkyY-----~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYY-----TQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred hhhhhhhhcccHHHHHHHH-----HHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 3456789999999999987 45567788889999999999999999999999999999999999999999999999
Q ss_pred HCCCcHHHHHHHHHH------------------h------------hccCCCCCHHHHHHHHHHHH--------------
Q 005499 318 AIGQNDAALNLLRKS------------------L------------HKHERPNDLMALLLAAKICS-------------- 353 (693)
Q Consensus 318 ~~g~~~~A~~~~~~~------------------l------------~~~~~p~~~~~~~~~a~~~~-------------- 353 (693)
..|++.+|+.-+.-. + +....|.-+.+.++....-.
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 999999997653221 1 10011222222221111000
Q ss_pred -------------hc---CCcHHHHHHHHHHHHHhhcCC--------CcchhHhHHHHHHHHHhhhhcccCChHHHhHHH
Q 005499 354 -------------ED---CHLAAEGIQYARTALSNAQGK--------DEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQ 409 (693)
Q Consensus 354 -------------~~---~~~~~~A~~~~~~al~~~~~~--------~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~ 409 (693)
.. ..+. .|.+.+.+........ .-...+.++.+.|..++..|+.
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~-~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~----------- 342 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYL-KAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDS----------- 342 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHH-HHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCc-----------
Confidence 00 0111 2333333222211100 0123478889999999999999
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHH-----HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005499 410 SEALKSLDGASTFENNNADLFFDL-----EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAAL 484 (693)
Q Consensus 410 ~~A~~~~~~al~~~p~~~~~~~~l-----~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 484 (693)
-.|...|.+++.++|.+...+..+ ..++.++-...|.++..++|.++ .+|+.+|.+++-++++++|+.-|++++
T Consensus 343 ~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~-dvYyHRgQm~flL~q~e~A~aDF~Kai 421 (606)
T KOG0547|consen 343 LGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENP-DVYYHRGQMRFLLQQYEEAIADFQKAI 421 (606)
T ss_pred hhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCC-chhHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999988765555 78899999999999999999999 999999999999999999999999999
Q ss_pred hhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChH
Q 005499 485 DETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWK 564 (693)
Q Consensus 485 ~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 564 (693)
+++| .+...+..++...+++++++++...|+.+....|.. ++++...|.++..+++++
T Consensus 422 ~L~p--e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~--------------------~Evy~~fAeiLtDqqqFd 479 (606)
T KOG0547|consen 422 SLDP--ENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC--------------------PEVYNLFAEILTDQQQFD 479 (606)
T ss_pred hcCh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--------------------chHHHHHHHHHhhHHhHH
Confidence 9999 899999999999999999999999999999999666 689999999999999999
Q ss_pred HHHHHHHHHHhhCCC------CHHHHHHHHHHHH-HCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHH
Q 005499 565 DVAICMGKARELKAY------SAEMLHTEGVMHE-GCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVAR 637 (693)
Q Consensus 565 ~A~~~~~~al~~~p~------~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~ 637 (693)
+|++.|..++.+.|. ++..+...|.+.. -.+++.+|+.+++++++++|....++..||.+..++|+.+ +|+
T Consensus 480 ~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~--eAi 557 (606)
T KOG0547|consen 480 KAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKID--EAI 557 (606)
T ss_pred HHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHH--HHH
Confidence 999999999999998 5555555554433 4589999999999999999999999999999999999988 999
Q ss_pred HHHHHHHhhCCCCH
Q 005499 638 SLLSDALRIEPTNR 651 (693)
Q Consensus 638 ~~~~~al~~~p~~~ 651 (693)
++|++++.+..+..
T Consensus 558 elFEksa~lArt~~ 571 (606)
T KOG0547|consen 558 ELFEKSAQLARTES 571 (606)
T ss_pred HHHHHHHHHHHhHH
Confidence 99999988765433
No 30
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=8.7e-23 Score=194.67 Aligned_cols=298 Identities=13% Similarity=0.083 Sum_probs=221.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcC
Q 005499 278 LTYALSLCSQTSILAKQLEEIMPG-VFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLAAKICSEDC 356 (693)
Q Consensus 278 l~~~~~~~g~~~~a~~~~e~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~ 356 (693)
++.++-...+.+.+..-.+..... -|...-.-...|.+.+...++++|+..|+.+.+ .+|-...-.-+.+.+.+-..
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~k--nDPYRl~dmdlySN~LYv~~ 310 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRK--NDPYRLDDMDLYSNVLYVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHh--cCCCcchhHHHHhHHHHHHh
Confidence 445555666778888888877766 455566677789999999999999999999999 57987777777776666555
Q ss_pred CcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChHHHHHHHhC
Q 005499 357 HLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNADLFFDLEQR 436 (693)
Q Consensus 357 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 436 (693)
+.. +-.-+.+.+..++. +++.....+|.-|...++. ++|+.+|++|++++|
T Consensus 311 ~~s-kLs~LA~~v~~idK-----yR~ETCCiIaNYYSlr~eH-----------EKAv~YFkRALkLNp------------ 361 (559)
T KOG1155|consen 311 DKS-KLSYLAQNVSNIDK-----YRPETCCIIANYYSLRSEH-----------EKAVMYFKRALKLNP------------ 361 (559)
T ss_pred hhH-HHHHHHHHHHHhcc-----CCccceeeehhHHHHHHhH-----------HHHHHHHHHHHhcCc------------
Confidence 444 33333444444433 4466677777777777777 777777777766654
Q ss_pred CHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHH
Q 005499 437 NLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETY 516 (693)
Q Consensus 437 ~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 516 (693)
... .+|..+|.-|..+++...|++.|++|++.+| .+..+|+.+|+.|..++-+.=|+-+|
T Consensus 362 -----------------~~~-~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p--~DyRAWYGLGQaYeim~Mh~YaLyYf 421 (559)
T KOG1155|consen 362 -----------------KYL-SAWTLMGHEYVEMKNTHAAIESYRRAVDINP--RDYRAWYGLGQAYEIMKMHFYALYYF 421 (559)
T ss_pred -----------------chh-HHHHHhhHHHHHhcccHHHHHHHHHHHhcCc--hhHHHHhhhhHHHHHhcchHHHHHHH
Confidence 454 7788888888888888888888888888888 67788888888888888888888888
Q ss_pred HHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC
Q 005499 517 RYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQ 596 (693)
Q Consensus 517 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 596 (693)
+++...- |.+...|..||.+|.+.++.++|+.+|.+++.....+..++..+|.+|.+.++
T Consensus 422 qkA~~~k--------------------PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d 481 (559)
T KOG1155|consen 422 QKALELK--------------------PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKD 481 (559)
T ss_pred HHHHhcC--------------------CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh
Confidence 8888776 34467888888888888888888888888887777777788888888888888
Q ss_pred hHHHHHHHHHHHh-------hCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCC
Q 005499 597 THEALRAYINALL-------IEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEP 648 (693)
Q Consensus 597 ~~~A~~~~~~al~-------~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p 648 (693)
.++|..+|++.+. ..|+...+...|+.-+.+.++++ +|..+..+++.-++
T Consensus 482 ~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~--~As~Ya~~~~~~~~ 538 (559)
T KOG1155|consen 482 LNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFD--EASYYATLVLKGET 538 (559)
T ss_pred HHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchH--HHHHHHHHHhcCCc
Confidence 8888888888776 34555566677788788888877 88777777766543
No 31
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.4e-22 Score=193.26 Aligned_cols=362 Identities=16% Similarity=0.116 Sum_probs=298.2
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCC--CCHHHHH
Q 005499 269 KWDPAVMEHLTYALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERP--NDLMALL 346 (693)
Q Consensus 269 p~~~~~~~~l~~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p--~~~~~~~ 346 (693)
..|+..++..|.++-..|....|+..|-.++...|-.-.+|..++.+.. -+.......... | .+...-+
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit-------~~e~~~~l~~~l--~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELIT-------DIEILSILVVGL--PSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhc-------hHHHHHHHHhcC--cccchHHHHH
Confidence 3577888899999999999999999999998877777778887766543 234444444322 4 4555556
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHh-hcCCCcchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCC
Q 005499 347 LAAKICSEDCHLAAEGIQYARTALSN-AQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENN 425 (693)
Q Consensus 347 ~~a~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 425 (693)
.+..++....... +++.-....+.. .| .. ...-...|.+...+.++ ++|+..|+...+.+|-
T Consensus 232 F~~~a~~el~q~~-e~~~k~e~l~~~gf~---~~--~~i~~~~A~~~y~~rDf-----------D~a~s~Feei~knDPY 294 (559)
T KOG1155|consen 232 FLKKAYQELHQHE-EALQKKERLSSVGFP---NS--MYIKTQIAAASYNQRDF-----------DQAESVFEEIRKNDPY 294 (559)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhccCC---cc--HHHHHHHHHHHhhhhhH-----------HHHHHHHHHHHhcCCC
Confidence 6666655444333 777777777776 44 33 55566778889999999 9999999999999985
Q ss_pred C---hHHHHHH--HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHH
Q 005499 426 N---ADLFFDL--EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKA 500 (693)
Q Consensus 426 ~---~~~~~~l--~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 500 (693)
. .+.+.+. ..++-.+-.-..+.+..++.-.+ ++...+|+.|...++.++|+.+|+++++++| ....+|..+|
T Consensus 295 Rl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~-ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp--~~~~aWTLmG 371 (559)
T KOG1155|consen 295 RLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRP-ETCCIIANYYSLRSEHEKAVMYFKRALKLNP--KYLSAWTLMG 371 (559)
T ss_pred cchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCc-cceeeehhHHHHHHhHHHHHHHHHHHHhcCc--chhHHHHHhh
Confidence 4 4444444 33333333344455666777777 8888899999999999999999999999999 7899999999
Q ss_pred HHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCC
Q 005499 501 KLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYS 580 (693)
Q Consensus 501 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 580 (693)
.-|..+.+...|++.|+++++++|.+ ..+|+.+|++|..++.+.=|+-+|+++....|++
T Consensus 372 HEyvEmKNt~AAi~sYRrAvdi~p~D--------------------yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnD 431 (559)
T KOG1155|consen 372 HEYVEMKNTHAAIESYRRAVDINPRD--------------------YRAWYGLGQAYEIMKMHFYALYYFQKALELKPND 431 (559)
T ss_pred HHHHHhcccHHHHHHHHHHHhcCchh--------------------HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999655 6999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHh-------hCCCCHHH
Q 005499 581 AEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALR-------IEPTNRKA 653 (693)
Q Consensus 581 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~-------~~p~~~~~ 653 (693)
+..|..+|.||.+.++.++|+++|.+++.....+..++..||.+|.++++.. +|..+|++.++ ..|....+
T Consensus 432 sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~--eAa~~yek~v~~~~~eg~~~~~t~ka 509 (559)
T KOG1155|consen 432 SRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLN--EAAQYYEKYVEVSELEGEIDDETIKA 509 (559)
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHhhcccchHHHHH
Confidence 9999999999999999999999999999998888899999999999999998 99999999998 44555677
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcc
Q 005499 654 WYYLGLVHKDDGRIADAADCFQAASMLE 681 (693)
Q Consensus 654 ~~~lg~~~~~~g~~~~A~~~~~~al~l~ 681 (693)
...|+.-+.+.+++++|-.+..+++.-+
T Consensus 510 ~~fLA~~f~k~~~~~~As~Ya~~~~~~~ 537 (559)
T KOG1155|consen 510 RLFLAEYFKKMKDFDEASYYATLVLKGE 537 (559)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHhcCC
Confidence 7779999999999999999888877653
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.93 E-value=4.8e-22 Score=204.92 Aligned_cols=615 Identities=17% Similarity=0.129 Sum_probs=370.7
Q ss_pred cccchhhhhcccCCcCHHHHHHHhhhcc--CCCHHHHHHHHHHHHhhcCCHHHHHhhhccCCcchhhhhccccchhhhhh
Q 005499 23 ACMKAAEVEAKLDEGNIQEAESSLREGL--SLNFEEARALLGRLEYQRGNVEGALRVFDGIDLHAAIQRLQPSFSEKSAS 100 (693)
Q Consensus 23 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l--~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (693)
+...+++|+..|..|++++|+..+++++ +|.+..+++.||.||-++|+.++++..+-.+- .+.|+.......-+..
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAA--HL~p~d~e~W~~ladl 216 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAA--HLNPKDYELWKRLADL 216 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHH--hcCCCChHHHHHHHHH
Confidence 6667999999999999999999999999 88999999999999999999999998775431 1111111100000000
Q ss_pred hccCCCCCCCccchhhHHH---HHHHHHHHHHHHhHhhCChHHHHHHHHHHHHHHHHhhhcCCCChhhhhhHHHHHHHHH
Q 005499 101 KKCRSRSDSHVSVSQHAAS---LVLEAIYLKAKSLQKLGRLTEAANECKSVLDAVERIFQQGIPDAQVDNRLQETVSRAV 177 (693)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 177 (693)
....+.+.++.--..+++. ...+..+.++..|.+.|+...|+..|.+++...+ |. -.+.+...+
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-------~~------d~er~~d~i 283 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-------PV------DIERIEDLI 283 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-------ch------hHHHHHHHH
Confidence 0000000000000000000 0123444555556666666666666655544211 11 112333444
Q ss_pred hhhHHHHhhcCCchHHHHHHHHHhcccC----CCChhHHHHH-----HHHHHHHhhhcccc----c------------CC
Q 005499 178 ELLPELWKQVGCDHDALAAYRRAVLSQW----NLDNECCARI-----QKRFAVFLLHSGVE----A------------GP 232 (693)
Q Consensus 178 ~~l~~~~~~~g~~~~A~~~~~~~l~~~~----~~~~~~~~~~-----~~~~a~~l~~~~~~----~------------~~ 232 (693)
...+..|...++-+.|++.+..+++... .+|......+ +...+...+...+. . ..
T Consensus 284 ~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~ 363 (895)
T KOG2076|consen 284 RRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREE 363 (895)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccc
Confidence 4445556666666666666666665211 0111111111 11111111111111 0 00
Q ss_pred CCCcC--------C-------CCCcccCCChhHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 005499 233 PSLGS--------Q-------VEGSYAPKNNLEEAILLLLILMKKYHLGKIKWDPAVMEHLTYALSLCSQTSILAKQLEE 297 (693)
Q Consensus 233 ~~~~~--------~-------~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~e~ 297 (693)
+.... . +...-.+..+..+++..+.. .+.+ ....++.++..++.+|...|.+..|+..|..
T Consensus 364 ~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~--~~n~--~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~ 439 (895)
T KOG2076|consen 364 PNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLV--EDNV--WVSDDVDLYLDLADALTNIGKYKEALRLLSP 439 (895)
T ss_pred ccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHH--HhcC--ChhhhHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 00000 0 00111233344444443321 1111 0124667899999999999999999999999
Q ss_pred hcCCCC-CcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCC
Q 005499 298 IMPGVF-LRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLAAKICSEDCHLAAEGIQYARTALSNAQGK 376 (693)
Q Consensus 298 ~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~ 376 (693)
+....+ .+..+|+.+|.||...|.+++|+..|++++. ..|++..+...++.++.+.|+.. +|.+.+.+.+.-++..
T Consensus 440 i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~--~~p~~~D~Ri~Lasl~~~~g~~E-kalEtL~~~~~~D~~~ 516 (895)
T KOG2076|consen 440 ITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLI--LAPDNLDARITLASLYQQLGNHE-KALETLEQIINPDGRN 516 (895)
T ss_pred HhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCchhhhhhHHHHHHhcCCHH-HHHHHHhcccCCCccc
Confidence 987544 4567999999999999999999999999999 67999999999999999999999 9998888866322110
Q ss_pred ----CcchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHh-------cCCCChHHHHHH----HhCCHHHH
Q 005499 377 ----DEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGAST-------FENNNADLFFDL----EQRNLSTA 441 (693)
Q Consensus 377 ----~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-------~~p~~~~~~~~l----~~~~~~~A 441 (693)
...............+...|+. ++=+..-...+. ..|.+....... ..+.+.+-
T Consensus 517 ~e~~a~~~e~ri~~~r~d~l~~~gk~-----------E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~ 585 (895)
T KOG2076|consen 517 AEACAWEPERRILAHRCDILFQVGKR-----------EEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSEL 585 (895)
T ss_pred hhhccccHHHHHHHHHHHHHHHhhhH-----------HHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchh
Confidence 0111244456666777777776 432222222211 112111111000 00111111
Q ss_pred HHHHHHH----------------------HHhcCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCch---
Q 005499 442 LRYAKQY----------------------IDATGGSV---LKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQG--- 493 (693)
Q Consensus 442 ~~~~~~a----------------------l~~~p~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~--- 493 (693)
......+ .....-.. -+.+..+..++.+.+++++|+.++..++....-+...
T Consensus 586 ~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~ 665 (895)
T KOG2076|consen 586 LKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIR 665 (895)
T ss_pred HHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHH
Confidence 1111111 11111111 0233456678889999999999999998754311122
Q ss_pred -HHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHH
Q 005499 494 -PILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGK 572 (693)
Q Consensus 494 -~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 572 (693)
..-+....+.+..+++..|..+.+.++....... .+.....|+..-......++-.-=...+..
T Consensus 666 k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~---------------~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~ 730 (895)
T KOG2076|consen 666 KELQFLGLKASLYARDPGDAFSYLRSVITQFQFYL---------------DVYQLNLWNLDFSYFSKYGQRVCYLRLIMR 730 (895)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhh---------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344455667778999999999999998832221 133356666545555555555555556666
Q ss_pred HHhhCCCC-HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHh--CCCC------hHHHHHHHHHH
Q 005499 573 ARELKAYS-AEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKL--GPKA------LPVARSLLSDA 643 (693)
Q Consensus 573 al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~------l~~A~~~~~~a 643 (693)
++...|++ +......|......+.+.-|+..|-++...+|++|-.-..+|.++..+ ++.- +-+++.++.+.
T Consensus 731 ~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY 810 (895)
T KOG2076|consen 731 LLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRY 810 (895)
T ss_pred HhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 77777777 667777899999999999999999999999999998777777766543 2221 23567777777
Q ss_pred HhhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCC
Q 005499 644 LRIEPT--NRKAWYYLGLVHKDDGRIADAADCFQAASMLEESDP 685 (693)
Q Consensus 644 l~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 685 (693)
.++... ..++.+++|.+|...|-..-|+.+|+++|.+.|-..
T Consensus 811 ~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~ 854 (895)
T KOG2076|consen 811 KELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDV 854 (895)
T ss_pred HHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCcccc
Confidence 665544 678999999999999999999999999999976543
No 33
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1e-22 Score=199.24 Aligned_cols=502 Identities=16% Similarity=0.102 Sum_probs=355.6
Q ss_pred chhhhhcccCCcCHHHHHHHhhhccCC-CHHHHHHHHHHHHhhcCCHHHHHhhhccCCcchhhhhccccchhhhhhhccC
Q 005499 26 KAAEVEAKLDEGNIQEAESSLREGLSL-NFEEARALLGRLEYQRGNVEGALRVFDGIDLHAAIQRLQPSFSEKSASKKCR 104 (693)
Q Consensus 26 ~~~~~~~~~~~g~~~~A~~~~~~~l~~-~~~~a~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (693)
+....+-++.+-.|.-|.=+-+++... +++.--+++|++++-.|+|..|....+.-..+. .
T Consensus 19 ~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~---~--------------- 80 (611)
T KOG1173|consen 19 YRRLVRDALMQHRYKTALFWADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLEK---R--------------- 80 (611)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhh---h---------------
Confidence 344555778888899999999997733 555667899999999999999999887642221 0
Q ss_pred CCCCCCccchhhHHHHHHHHHHHHHHHhHhhCChHHHHHHHHHHHHHH------HHhhhcCCCChhhhh--hHHHHHHHH
Q 005499 105 SRSDSHVSVSQHAASLVLEAIYLKAKSLQKLGRLTEAANECKSVLDAV------ERIFQQGIPDAQVDN--RLQETVSRA 176 (693)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~------~~~~~~~~~~~~~~~--~~~~~~~~a 176 (693)
.+-+.+..+.|+.+..++++|...+.+.-... ++-. .+..+..+.. .....-..-
T Consensus 81 ----------------d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~-~~~l~~n~~~~~~~~~~essi 143 (611)
T KOG1173|consen 81 ----------------DIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDA-ANTLELNSAGEDLMINLESSI 143 (611)
T ss_pred ----------------hHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhh-hceeccCcccccccccchhce
Confidence 12356778899999999999998776330010 0000 0000000000 000011111
Q ss_pred HhhhHHHHhhcCCchHHHHHHHHHhcccCCCChhHHHHHHHHHHHHhhhcccccCCCCCcCCCCCcccCCChhHHHHHHH
Q 005499 177 VELLPELWKQVGCDHDALAAYRRAVLSQWNLDNECCARIQKRFAVFLLHSGVEAGPPSLGSQVEGSYAPKNNLEEAILLL 256 (693)
Q Consensus 177 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 256 (693)
+..-+.+|......++|...|++++.. |..++..+..-....++....+. .+...+. .-.-.+...+-+..+
T Consensus 144 c~lRgk~y~al~n~~~ar~~Y~~Al~~----D~~c~Ea~~~lvs~~mlt~~Ee~---~ll~~l~-~a~~~~ed~e~l~~l 215 (611)
T KOG1173|consen 144 CYLRGKVYVALDNREEARDKYKEALLA----DAKCFEAFEKLVSAHMLTAQEEF---ELLESLD-LAMLTKEDVERLEIL 215 (611)
T ss_pred eeeeeehhhhhccHHHHHHHHHHHHhc----chhhHHHHHHHHHHHhcchhHHH---HHHhccc-HHhhhhhHHHHHHHH
Confidence 223356788888999999999999985 55555554332222221110000 0000000 000000111100000
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhcc
Q 005499 257 LILMKKYHLGKIKWDPAVMEHLTYALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKH 336 (693)
Q Consensus 257 ~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 336 (693)
. +..+.+.-+.. ...+.++ ..+-...++.++....+..++..++|.+..+++..++.
T Consensus 216 y----el~~~k~~n~~--------~~~r~~~---------~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle-- 272 (611)
T KOG1173|consen 216 Y----ELKLCKNRNEE--------SLTRNED---------ESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLE-- 272 (611)
T ss_pred H----Hhhhhhhcccc--------ccccCch---------hhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHh--
Confidence 0 00000000000 0000111 11112235677888899999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHH
Q 005499 337 ERPNDLMALLLAAKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSL 416 (693)
Q Consensus 337 ~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~ 416 (693)
.+|-+...+.+.-..+...++.. +-.....+.++..| .. +..|+.+|.-|...|++ .+|.++|
T Consensus 273 ~dpfh~~~~~~~ia~l~el~~~n-~Lf~lsh~LV~~yP---~~--a~sW~aVg~YYl~i~k~-----------seARry~ 335 (611)
T KOG1173|consen 273 KDPFHLPCLPLHIACLYELGKSN-KLFLLSHKLVDLYP---SK--ALSWFAVGCYYLMIGKY-----------SEARRYF 335 (611)
T ss_pred hCCCCcchHHHHHHHHHHhcccc-hHHHHHHHHHHhCC---CC--CcchhhHHHHHHHhcCc-----------HHHHHHH
Confidence 56888777666555666677666 77788888899888 44 77799999999999999 9999999
Q ss_pred HHHHhcCCCChHHHHHH-----HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCC
Q 005499 417 DGASTFENNNADLFFDL-----EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWE 491 (693)
Q Consensus 417 ~~al~~~p~~~~~~~~l-----~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 491 (693)
.++..++|....+|... ..+.-++|+..|..+-++.|+.. .....+|.-|...+++.-|...|.+++.+.| .
T Consensus 336 SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P--~ 412 (611)
T KOG1173|consen 336 SKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLYLGMEYMRTNNLKLAEKFFKQALAIAP--S 412 (611)
T ss_pred HHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHHHHHHHHHhccHHHHHHHHHHHHhcCC--C
Confidence 99999999999999888 78899999999999999999988 8888899999999999999999999999999 8
Q ss_pred chHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHH
Q 005499 492 QGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMG 571 (693)
Q Consensus 492 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 571 (693)
++-++..+|.+....+.+.+|..+|+.++..-+... ...+.-..++.+||.++.+++.+++|+.+|+
T Consensus 413 Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~-------------~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 413 DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVL-------------NEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcc-------------ccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 999999999999999999999999999996544332 1112235678999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q 005499 572 KARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFS 626 (693)
Q Consensus 572 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 626 (693)
+++...|.++.++..+|.+|..+|+++.|+..|.++|.+.|++..+-..|+.+..
T Consensus 480 ~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 480 KALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999776666665543
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.93 E-value=4.9e-23 Score=195.27 Aligned_cols=285 Identities=15% Similarity=0.056 Sum_probs=240.2
Q ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCC-CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHH
Q 005499 308 RWNALALCYSAIGQNDAALNLLRKSLHKHERPN-DLMALLLAAKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLR 386 (693)
Q Consensus 308 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~-~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 386 (693)
+-...+..+++.|+++.|+++++-.-+.. +.. ...+..+-+.-+++.|+...+|..+...++.... +.+.++.
T Consensus 421 lei~ka~~~lk~~d~~~aieilkv~~~kd-nk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr-----yn~~a~~ 494 (840)
T KOG2003|consen 421 LEINKAGELLKNGDIEGAIEILKVFEKKD-NKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR-----YNAAALT 494 (840)
T ss_pred hhhhHHHHHHhccCHHHHHHHHHHHHhcc-chhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc-----cCHHHhh
Confidence 34567888999999999999998766531 111 2222233333344555555589999999988655 3388888
Q ss_pred HHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChHHHHHH-----HhCCHHHHHHHHHHHHHhcCCCcHHHHH
Q 005499 387 MLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNADLFFDL-----EQRNLSTALRYAKQYIDATGGSVLKGWK 461 (693)
Q Consensus 387 ~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-----~~~~~~~A~~~~~~al~~~p~~~~~~~~ 461 (693)
..|.+-+..|++ ++|.+.|+.++..+....++++++ .+|++++|+.+|-+.-.+--++. ++++
T Consensus 495 nkgn~~f~ngd~-----------dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~-evl~ 562 (840)
T KOG2003|consen 495 NKGNIAFANGDL-----------DKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNA-EVLV 562 (840)
T ss_pred cCCceeeecCcH-----------HHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhH-HHHH
Confidence 999999999999 999999999999888888888888 88999999999999888777787 9999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhh
Q 005499 462 LLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIED 541 (693)
Q Consensus 462 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 541 (693)
.++.+|..+.+..+|++++-++..+-| .++.++..++.+|-+.|+-.+|.+++-......
T Consensus 563 qianiye~led~aqaie~~~q~~slip--~dp~ilskl~dlydqegdksqafq~~ydsyryf------------------ 622 (840)
T KOG2003|consen 563 QIANIYELLEDPAQAIELLMQANSLIP--NDPAILSKLADLYDQEGDKSQAFQCHYDSYRYF------------------ 622 (840)
T ss_pred HHHHHHHHhhCHHHHHHHHHHhcccCC--CCHHHHHHHHHHhhcccchhhhhhhhhhccccc------------------
Confidence 999999999999999999999999999 899999999999999999999998887777776
Q ss_pred hcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHH
Q 005499 542 DKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLV 621 (693)
Q Consensus 542 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 621 (693)
|.+.++.-.+|..|....-+++|+.+|+++.-+.|+.......++.|+.+.|+|.+|...|+...+..|.+.+++..|
T Consensus 623 --p~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkfl 700 (840)
T KOG2003|consen 623 --PCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFL 700 (840)
T ss_pred --CcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHH
Confidence 455788888999999999999999999999999999888888999999999999999999999999999999999988
Q ss_pred HHHHHHhCCCC
Q 005499 622 GSLFSKLGPKA 632 (693)
Q Consensus 622 a~~~~~~g~~~ 632 (693)
..+...+|-.+
T Consensus 701 vri~~dlgl~d 711 (840)
T KOG2003|consen 701 VRIAGDLGLKD 711 (840)
T ss_pred HHHhccccchh
Confidence 88888887543
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.93 E-value=6.7e-23 Score=194.36 Aligned_cols=485 Identities=15% Similarity=0.097 Sum_probs=357.8
Q ss_pred HhHhhCChHHHHHHHHHHHH----HHHHhhhcCCCChhhhhhHHHHHHHHHhhhHHHHhhcCCchHHHHHHHHHhcccCC
Q 005499 131 SLQKLGRLTEAANECKSVLD----AVERIFQQGIPDAQVDNRLQETVSRAVELLPELWKQVGCDHDALAAYRRAVLSQWN 206 (693)
Q Consensus 131 ~~~~~g~~~~A~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 206 (693)
.-...|++.+|...-+.+=. .+....+.+.|.....+ ..-..+..|++-|.....+.+|+..|+-.++...-
T Consensus 158 ian~~~~~k~aldkakdagrker~lvk~req~~~~e~inld----ltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf 233 (840)
T KOG2003|consen 158 IANECGDFKEALDKAKDAGRKERALVKHREQQGLPEMINLD----LTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMF 233 (840)
T ss_pred HHhhhhhHHHHHHHHHhcchhHHHHHHHHHhccchhhcccc----chHHHHHHHHHHhhhhHHHHHHhhhhhhhhccccc
Confidence 34456788887765442211 01111222444433221 11235556677787777888888777766653110
Q ss_pred CChhHHHHHHHHHHHHhhhcccccCCCCCcCCCCCcccCCChhHHHHHHHHHHHHHHhhcCCCC-----cHHHHHHHHHH
Q 005499 207 LDNECCARIQKRFAVFLLHSGVEAGPPSLGSQVEGSYAPKNNLEEAILLLLILMKKYHLGKIKW-----DPAVMEHLTYA 281 (693)
Q Consensus 207 ~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~-----~~~~~~~l~~~ 281 (693)
....-+...++++++++.++.+|+..+... +...|. ...+++.+|..
T Consensus 234 -----------------------~nag~lkmnigni~~kkr~fskaikfyrma-----ldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 234 -----------------------PNAGILKMNIGNIHFKKREFSKAIKFYRMA-----LDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred -----------------------CCCceeeeeecceeeehhhHHHHHHHHHHH-----HhhccccchhhHHHHHhhcCee
Confidence 111223446788999999999999987543 333342 23478889999
Q ss_pred HHhcCCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCC---------CHHHHHHHHHH-
Q 005499 282 LSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPN---------DLMALLLAAKI- 351 (693)
Q Consensus 282 ~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~---------~~~~~~~~a~~- 351 (693)
+.+.|+|+.|+..|+..+...| +..+-+++..|++..|+-++-.+.|.+++.....|+ ++...++--.+
T Consensus 286 fiq~gqy~dainsfdh~m~~~p-n~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~ 364 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEEAP-NFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIK 364 (840)
T ss_pred EEecccchhhHhhHHHHHHhCc-cHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHh
Confidence 9999999999999999998775 456678899999999999999999999987533222 22221111111
Q ss_pred --HH---hcCCcHHHHHHHHHHHHHhh-cCCC-cc------------------hhHhHHHHHHHHHhhhhcccCChHHHh
Q 005499 352 --CS---EDCHLAAEGIQYARTALSNA-QGKD-EH------------------LKGVGLRMLGLCLGRHAKVSSSDYERS 406 (693)
Q Consensus 352 --~~---~~~~~~~~A~~~~~~al~~~-~~~~-~~------------------~~~~~~~~lg~~~~~~~~~~~~~~~~~ 406 (693)
.+ ...+.. .|..+...+.++. |-.. +. +....-...+..+.++|++
T Consensus 365 nd~lk~~ek~~ka-~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~-------- 435 (840)
T KOG2003|consen 365 NDHLKNMEKENKA-DAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDI-------- 435 (840)
T ss_pred hHHHHHHHHhhhh-hHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH--------
Confidence 11 111112 3333333333322 1000 00 0111223345567788888
Q ss_pred HHHHHHHHHHHHHHhcCCCC-------hHHHHHH-HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHH
Q 005499 407 RLQSEALKSLDGASTFENNN-------ADLFFDL-EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEV 478 (693)
Q Consensus 407 ~~~~~A~~~~~~al~~~p~~-------~~~~~~l-~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~ 478 (693)
+.|++.++-.-+.+... ..+++.+ .-.++..|..+...++.++.-++ .++.+.|.+-+..|++++|.+
T Consensus 436 ---~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~-~a~~nkgn~~f~ngd~dka~~ 511 (840)
T KOG2003|consen 436 ---EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNA-AALTNKGNIAFANGDLDKAAE 511 (840)
T ss_pred ---HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCH-HHhhcCCceeeecCcHHHHHH
Confidence 99998887544443322 2222333 34578999999999999999888 999999999999999999999
Q ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHH
Q 005499 479 VTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYS 558 (693)
Q Consensus 479 ~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 558 (693)
.|.+++..+. ....+++++|..+..+|+.++|+++|-++-.+- .++++++..++.+|.
T Consensus 512 ~ykeal~nda--sc~ealfniglt~e~~~~ldeald~f~klh~il--------------------~nn~evl~qianiye 569 (840)
T KOG2003|consen 512 FYKEALNNDA--SCTEALFNIGLTAEALGNLDEALDCFLKLHAIL--------------------LNNAEVLVQIANIYE 569 (840)
T ss_pred HHHHHHcCch--HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH--------------------HhhHHHHHHHHHHHH
Confidence 9999999888 788999999999999999999999999988776 344799999999999
Q ss_pred hCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHH
Q 005499 559 GLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARS 638 (693)
Q Consensus 559 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~ 638 (693)
.+.+..+|++++.++..+-|++|.++..+|.+|-+.|+-.+|.+++-...+..|.+.+..-+||..|....-.+ +|+.
T Consensus 570 ~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~e--kai~ 647 (840)
T KOG2003|consen 570 LLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSE--KAIN 647 (840)
T ss_pred HhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHH--HHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888 9999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCC
Q 005499 639 LLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASMLEESDP 685 (693)
Q Consensus 639 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 685 (693)
+|+++--+.|+...-...++.++.+.|+|..|.+.|+..-...|.+-
T Consensus 648 y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedl 694 (840)
T KOG2003|consen 648 YFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDL 694 (840)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccch
Confidence 99999999999877777889999999999999999999888888763
No 36
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=8.3e-23 Score=199.87 Aligned_cols=411 Identities=16% Similarity=0.058 Sum_probs=314.4
Q ss_pred CCCCcCCCCCcccCCChhHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhh----cCC--CCCc
Q 005499 232 PPSLGSQVEGSYAPKNNLEEAILLLLILMKKYHLGKIKWDPAVMEHLTYALSLCSQTSILAKQLEEI----MPG--VFLR 305 (693)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~e~~----l~~--~~~~ 305 (693)
.|...+-+.++++-.+.++.|.-++... + ....+.......+.++.+..+++.+..++.+. ..+ .+.+
T Consensus 48 dp~d~~~~aq~l~~~~~y~ra~~lit~~--~----le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~ 121 (611)
T KOG1173|consen 48 DPADIYWLAQVLYLGRQYERAAHLITTY--K----LEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKD 121 (611)
T ss_pred ChHHHHHHHHHHHhhhHHHHHHHHHHHh--h----hhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchh
Confidence 3444445556667777777776655322 1 11245566777788888888888888877733 111 1111
Q ss_pred -------------------HHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH----------hcC
Q 005499 306 -------------------SDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLAAKICS----------EDC 356 (693)
Q Consensus 306 -------------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~----------~~~ 356 (693)
...++..|.+|....++++|...|.+++. .++.+..+...+-.... ...
T Consensus 122 ~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~--~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l 199 (611)
T KOG1173|consen 122 AANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALL--ADAKCFEAFEKLVSAHMLTAQEEFELLESL 199 (611)
T ss_pred hhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh--cchhhHHHHHHHHHHHhcchhHHHHHHhcc
Confidence 12355667788888888888888888888 56777665543322111 110
Q ss_pred CcH---HHHHHHHHHHHHh-------------hcCCC---cchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHH
Q 005499 357 HLA---AEGIQYARTALSN-------------AQGKD---EHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLD 417 (693)
Q Consensus 357 ~~~---~~A~~~~~~al~~-------------~~~~~---~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 417 (693)
+.. .+=.+..+...+. .+... .....+...-.+..++..+++ .+....+.
T Consensus 200 ~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f-----------~~c~kit~ 268 (611)
T KOG1173|consen 200 DLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRF-----------KECLKITE 268 (611)
T ss_pred cHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChH-----------HHHHHHhH
Confidence 000 0001111111110 01000 001145556667777788888 99999999
Q ss_pred HHHhcCCCChHHHHHH-----HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCc
Q 005499 418 GASTFENNNADLFFDL-----EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQ 492 (693)
Q Consensus 418 ~al~~~p~~~~~~~~l-----~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 492 (693)
..+..+|-+...+-.. ..|+..+-...-.+..+..|+.+ ..|+.+|..|...|++.+|..+|.++..++| ..
T Consensus 269 ~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a-~sW~aVg~YYl~i~k~seARry~SKat~lD~--~f 345 (611)
T KOG1173|consen 269 ELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKA-LSWFAVGCYYLMIGKYSEARRYFSKATTLDP--TF 345 (611)
T ss_pred HHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCC-cchhhHHHHHHHhcCcHHHHHHHHHHhhcCc--cc
Confidence 9999999876654332 77887777777788899999999 9999999999999999999999999999999 78
Q ss_pred hHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHH
Q 005499 493 GPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGK 572 (693)
Q Consensus 493 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 572 (693)
.++|...|..+...|..++|+.+|..+-+..|.. ....+.+|.-|...++++-|...|.+
T Consensus 346 gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~--------------------hlP~LYlgmey~~t~n~kLAe~Ff~~ 405 (611)
T KOG1173|consen 346 GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC--------------------HLPSLYLGMEYMRTNNLKLAEKFFKQ 405 (611)
T ss_pred cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC--------------------cchHHHHHHHHHHhccHHHHHHHHHH
Confidence 9999999999999999999999999999998655 35667899999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh----CC---CChhHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q 005499 573 ARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLI----EP---SYVPCKVLVGSLFSKLGPKALPVARSLLSDALR 645 (693)
Q Consensus 573 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p---~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~ 645 (693)
|+.+.|.+|.++..+|.+.+..+.|.+|..+|+.++.. .+ .-.+.+.+||.++.++++++ +|+..+++++.
T Consensus 406 A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~--eAI~~~q~aL~ 483 (611)
T KOG1173|consen 406 ALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE--EAIDYYQKALL 483 (611)
T ss_pred HHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH--HHHHHHHHHHH
Confidence 99999999999999999999999999999999999943 22 23467999999999999999 99999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCC
Q 005499 646 IEPTNRKAWYYLGLVHKDDGRIADAADCFQAASMLEESDPI 686 (693)
Q Consensus 646 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 686 (693)
+.|.++.++..+|.+|..+|+++.|+++|.+++-++|++..
T Consensus 484 l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 484 LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHH
Confidence 99999999999999999999999999999999999999843
No 37
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=2.2e-22 Score=209.58 Aligned_cols=303 Identities=15% Similarity=0.090 Sum_probs=171.8
Q ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHH
Q 005499 306 SDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLAAKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGL 385 (693)
Q Consensus 306 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 385 (693)
....|..|..+...|++++|+..|++++. .+|++..++..++.++...+++. +|+..+++++...+ ........++
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~~l~~~~-~~~~~~~~~~ 110 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLK--VDPETVELHLALGNLFRRRGEVD-RAIRIHQNLLSRPD-LTREQRLLAL 110 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHcCcHH-HHHHHHHHHhcCCC-CCHHHHHHHH
Confidence 34566677777777777777777777777 45777777777777777777776 77777777766322 1111224567
Q ss_pred HHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChHHHHHHHhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 005499 386 RMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNADLFFDLEQRNLSTALRYAKQYIDATGGSVLKGWKLLAL 465 (693)
Q Consensus 386 ~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~ 465 (693)
..+|.++...|++ ++|+..|.++++.+|.+. .++..++.
T Consensus 111 ~~La~~~~~~g~~-----------~~A~~~~~~~l~~~~~~~------------------------------~~~~~la~ 149 (389)
T PRK11788 111 QELGQDYLKAGLL-----------DRAEELFLQLVDEGDFAE------------------------------GALQQLLE 149 (389)
T ss_pred HHHHHHHHHCCCH-----------HHHHHHHHHHHcCCcchH------------------------------HHHHHHHH
Confidence 7888888888888 888888887776554433 44445555
Q ss_pred HHHHcCChHHHHHHHHHHHhhcCCCCc-----hHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchh
Q 005499 466 VLSAQQRFSEAEVVTDAALDETTKWEQ-----GPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIE 540 (693)
Q Consensus 466 ~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 540 (693)
++...|++++|+..+++++...| .+ ...+..++.++...|++++|+..|+++++..|..
T Consensus 150 ~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------------- 213 (389)
T PRK11788 150 IYQQEKDWQKAIDVAERLEKLGG--DSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQC-------------- 213 (389)
T ss_pred HHHHhchHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC--------------
Confidence 55555555555555555555444 22 1123345555555555555555555555554222
Q ss_pred hhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHH
Q 005499 541 DDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYS-AEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKV 619 (693)
Q Consensus 541 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 619 (693)
..++..+|.++...|++++|+..+++++...|.+ ..++..++.++...|++++|+..+++++...|+... +.
T Consensus 214 ------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~ 286 (389)
T PRK11788 214 ------VRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LL 286 (389)
T ss_pred ------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HH
Confidence 3445555555555555555555555555555443 234445555555555555555555555555554432 25
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--cCChHHHHHHHHHHH
Q 005499 620 LVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKD--DGRIADAADCFQAAS 678 (693)
Q Consensus 620 ~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al 678 (693)
.++.++.+.|+++ +|+..++++++..|++......++..+.. .|+..+|+..+++.+
T Consensus 287 ~la~~~~~~g~~~--~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 287 ALAQLLEEQEGPE--AAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV 345 (389)
T ss_pred HHHHHHHHhCCHH--HHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHH
Confidence 5555555555555 55555555555555544333222222211 335555555554444
No 38
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.92 E-value=1.8e-20 Score=185.80 Aligned_cols=337 Identities=17% Similarity=0.113 Sum_probs=296.4
Q ss_pred cHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhH
Q 005499 305 RSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLAAKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVG 384 (693)
Q Consensus 305 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 384 (693)
....|..-+..+.+.+.++-|..+|..+++ ..|.....++.++.+--..|... +-..++++++...| .. ...
T Consensus 515 ~~~tw~~da~~~~k~~~~~carAVya~alq--vfp~k~slWlra~~~ek~hgt~E-sl~Allqkav~~~p---ka--e~l 586 (913)
T KOG0495|consen 515 RKSTWLDDAQSCEKRPAIECARAVYAHALQ--VFPCKKSLWLRAAMFEKSHGTRE-SLEALLQKAVEQCP---KA--EIL 586 (913)
T ss_pred hHhHHhhhHHHHHhcchHHHHHHHHHHHHh--hccchhHHHHHHHHHHHhcCcHH-HHHHHHHHHHHhCC---cc--hhH
Confidence 456799999999999999999999999999 56988888887776666666655 88889999999888 33 667
Q ss_pred HHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChHHHHHH-----HhCCHHHHHHHHHHHHHhcCCCcHHH
Q 005499 385 LRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNADLFFDL-----EQRNLSTALRYAKQYIDATGGSVLKG 459 (693)
Q Consensus 385 ~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-----~~~~~~~A~~~~~~al~~~p~~~~~~ 459 (693)
|++.+..+...|+. ..|...+.++++.+|++.++|+.- ...+++.|...|.++....|.. .+
T Consensus 587 wlM~ake~w~agdv-----------~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTe--Rv 653 (913)
T KOG0495|consen 587 WLMYAKEKWKAGDV-----------PAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTE--RV 653 (913)
T ss_pred HHHHHHHHHhcCCc-----------HHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcc--hh
Confidence 88888999999999 999999999999999999888776 7889999999999999877765 88
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccch
Q 005499 460 WKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQI 539 (693)
Q Consensus 460 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 539 (693)
|+.-+.+...+++.++|+.+++++++.+| +...+|..+|.++..+++.+.|...|...++..|..
T Consensus 654 ~mKs~~~er~ld~~eeA~rllEe~lk~fp--~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~------------- 718 (913)
T KOG0495|consen 654 WMKSANLERYLDNVEEALRLLEEALKSFP--DFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS------------- 718 (913)
T ss_pred hHHHhHHHHHhhhHHHHHHHHHHHHHhCC--chHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC-------------
Confidence 99999999999999999999999999999 889999999999999999999999999999998555
Q ss_pred hhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC-----
Q 005499 540 EDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSY----- 614 (693)
Q Consensus 540 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----- 614 (693)
+..|..++.+-...|+.-.|...++++.-.+|.++..|.....+..+.|+.++|...+.++|+-.|++
T Consensus 719 -------ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWa 791 (913)
T KOG0495|consen 719 -------IPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWA 791 (913)
T ss_pred -------chHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHH
Confidence 68999999999999999999999999999999999999999999999999999999999998876654
Q ss_pred -------------------------hhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHH
Q 005499 615 -------------------------VPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIAD 669 (693)
Q Consensus 615 -------------------------~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 669 (693)
+.++...|.++....+++ .|++.|.++++.+|++.++|..+-..+...|.-++
T Consensus 792 EaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~--kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed 869 (913)
T KOG0495|consen 792 EAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIE--KAREWFERAVKKDPDNGDAWAWFYKFELRHGTEED 869 (913)
T ss_pred HHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHH--HHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHH
Confidence 456667788888888877 89999999999999999998888888888898888
Q ss_pred HHHHHHHHHhcccCCCC
Q 005499 670 AADCFQAASMLEESDPI 686 (693)
Q Consensus 670 A~~~~~~al~l~p~~~~ 686 (693)
-.+.|.++....|.+..
T Consensus 870 ~kev~~~c~~~EP~hG~ 886 (913)
T KOG0495|consen 870 QKEVLKKCETAEPTHGE 886 (913)
T ss_pred HHHHHHHHhccCCCCCc
Confidence 88888888888887653
No 39
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.91 E-value=5.2e-20 Score=182.62 Aligned_cols=363 Identities=15% Similarity=0.054 Sum_probs=314.0
Q ss_pred cCCChhHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHCCCcH
Q 005499 244 APKNNLEEAILLLLILMKKYHLGKIKWDPAVMEHLTYALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQND 323 (693)
Q Consensus 244 ~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~ 323 (693)
.+++-++-|...+ ...+.-.|....+|...+..--..|..+.....|++++...|.....|...+..+...|+..
T Consensus 527 ~k~~~~~carAVy-----a~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~ 601 (913)
T KOG0495|consen 527 EKRPAIECARAVY-----AHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVP 601 (913)
T ss_pred HhcchHHHHHHHH-----HHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcH
Confidence 3444444444433 33445567788888888888888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCChH
Q 005499 324 AALNLLRKSLHKHERPNDLMALLLAAKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDY 403 (693)
Q Consensus 324 ~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~ 403 (693)
.|..++.++.. .+|++...++...++.+....+. .|..++.++....|. .+.|+--+.....+++.
T Consensus 602 ~ar~il~~af~--~~pnseeiwlaavKle~en~e~e-raR~llakar~~sgT------eRv~mKs~~~er~ld~~----- 667 (913)
T KOG0495|consen 602 AARVILDQAFE--ANPNSEEIWLAAVKLEFENDELE-RARDLLAKARSISGT------ERVWMKSANLERYLDNV----- 667 (913)
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHhhccccHH-HHHHHHHHHhccCCc------chhhHHHhHHHHHhhhH-----
Confidence 99999999999 45999999998888888888888 999999999886551 56777777888888999
Q ss_pred HHhHHHHHHHHHHHHHHhcCCCChHHHHHH-----HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHH
Q 005499 404 ERSRLQSEALKSLDGASTFENNNADLFFDL-----EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEV 478 (693)
Q Consensus 404 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-----~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~ 478 (693)
++|++.++++++..|..+..|..+ +.++.+.|...|..-++..|..+ ..|..++.+-...|..-.|..
T Consensus 668 ------eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~i-pLWllLakleEk~~~~~rAR~ 740 (913)
T KOG0495|consen 668 ------EEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSI-PLWLLLAKLEEKDGQLVRARS 740 (913)
T ss_pred ------HHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCc-hHHHHHHHHHHHhcchhhHHH
Confidence 999999999999999999988888 88999999999999999999999 999999999999999999999
Q ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHH
Q 005499 479 VTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYS 558 (693)
Q Consensus 479 ~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 558 (693)
+++++.-.+| .+...|.....+..+.|+.++|.....++++..|++ ...|..-....-
T Consensus 741 ildrarlkNP--k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~s--------------------g~LWaEaI~le~ 798 (913)
T KOG0495|consen 741 ILDRARLKNP--KNALLWLESIRMELRAGNKEQAELLMAKALQECPSS--------------------GLLWAEAIWLEP 798 (913)
T ss_pred HHHHHHhcCC--CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc--------------------chhHHHHHHhcc
Confidence 9999999999 899999999999999999999999999999998655 566666655555
Q ss_pred hCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHH
Q 005499 559 GLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARS 638 (693)
Q Consensus 559 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~ 638 (693)
.-++-..++ .|++....++.++...|.++....++++|.++|.++++.+|++.++|..+-..+.+.|.-+ .-.+
T Consensus 799 ~~~rkTks~----DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~ee--d~ke 872 (913)
T KOG0495|consen 799 RPQRKTKSI----DALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEE--DQKE 872 (913)
T ss_pred CcccchHHH----HHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHH--HHHH
Confidence 555544444 4555567888999999999999999999999999999999999999999999999999888 8899
Q ss_pred HHHHHHhhCCCCHHHHHHHHHH
Q 005499 639 LLSDALRIEPTNRKAWYYLGLV 660 (693)
Q Consensus 639 ~~~~al~~~p~~~~~~~~lg~~ 660 (693)
.+.+.....|.+...|.....-
T Consensus 873 v~~~c~~~EP~hG~~W~avSK~ 894 (913)
T KOG0495|consen 873 VLKKCETAEPTHGELWQAVSKD 894 (913)
T ss_pred HHHHHhccCCCCCcHHHHHhhh
Confidence 9999999999998888766543
No 40
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=2.6e-21 Score=201.60 Aligned_cols=275 Identities=14% Similarity=0.044 Sum_probs=232.6
Q ss_pred HhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChHHHHHH-----HhCCHHHHHHHHHHHHHhcCCCc
Q 005499 382 GVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNADLFFDL-----EQRNLSTALRYAKQYIDATGGSV 456 (693)
Q Consensus 382 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-----~~~~~~~A~~~~~~al~~~p~~~ 456 (693)
....+..|..+...|++ ++|+..|++++..+|++..++..+ ..|++++|+..+++++...+...
T Consensus 35 ~~~~y~~g~~~~~~~~~-----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 103 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQP-----------DKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTR 103 (389)
T ss_pred ccHHHHHHHHHHhcCCh-----------HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCH
Confidence 34455567777777777 777777777777777777666655 77777777777777776432221
Q ss_pred ---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCc
Q 005499 457 ---LKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPL 533 (693)
Q Consensus 457 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 533 (693)
..++..+|.++...|++++|+..|+++++..| .+..++..++.++...|++++|++.++++++..|....
T Consensus 104 ~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~----- 176 (389)
T PRK11788 104 EQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGD--FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLR----- 176 (389)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCc--chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcch-----
Confidence 14678899999999999999999999999988 78889999999999999999999999999988754320
Q ss_pred ccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 005499 534 RCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPS 613 (693)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 613 (693)
......+..+|.++...|++++|+..|+++++..|++..+++.+|.++...|++++|+..|++++..+|.
T Consensus 177 ----------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 246 (389)
T PRK11788 177 ----------VEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPE 246 (389)
T ss_pred ----------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh
Confidence 1124467789999999999999999999999999999999999999999999999999999999999887
Q ss_pred C-hhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCC
Q 005499 614 Y-VPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASMLEESDPIE 687 (693)
Q Consensus 614 ~-~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 687 (693)
+ ..++..++.+|...|+++ +|...++++++..|+... +..++.++...|++++|+..|+++++..|+++..
T Consensus 247 ~~~~~~~~l~~~~~~~g~~~--~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~ 318 (389)
T PRK11788 247 YLSEVLPKLMECYQALGDEA--EGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGF 318 (389)
T ss_pred hHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHH
Confidence 6 456888999999999999 999999999999998754 4889999999999999999999999999987643
No 41
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=4.4e-21 Score=187.39 Aligned_cols=378 Identities=15% Similarity=0.098 Sum_probs=222.9
Q ss_pred CCcccCCChhHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHC
Q 005499 240 EGSYAPKNNLEEAILLLLILMKKYHLGKIKWDPAVMEHLTYALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSAI 319 (693)
Q Consensus 240 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~ 319 (693)
++..+..|+++.|+.++. ..+...|.+..+|..-..+|...|+|+.|.+--.+..+..|.-+..|..+|..++..
T Consensus 9 gnaa~s~~d~~~ai~~~t-----~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFT-----EAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGL 83 (539)
T ss_pred HHhhcccccHHHHHHHHH-----HHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhc
Confidence 456778899999998884 345567788888999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhccc
Q 005499 320 GQNDAALNLLRKSLHKHERPNDLMALLLAAKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVS 399 (693)
Q Consensus 320 g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~ 399 (693)
|+|++|+..|.+.+. .+|++......++.++... . .+.+.+.. +..|..+.. .-
T Consensus 84 g~~~eA~~ay~~GL~--~d~~n~~L~~gl~~a~~~~--~--~~~~~~~~-------------p~~~~~l~~--~p----- 137 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLE--KDPSNKQLKTGLAQAYLED--Y--AADQLFTK-------------PYFHEKLAN--LP----- 137 (539)
T ss_pred ccHHHHHHHHHHHhh--cCCchHHHHHhHHHhhhHH--H--HhhhhccC-------------cHHHHHhhc--Ch-----
Confidence 999999999999999 6799988887777665111 0 11110000 111111100 00
Q ss_pred CChHHHhHHHHHHHHHHHHHHhcCCCChHHHH----------HH------------------------------------
Q 005499 400 SSDYERSRLQSEALKSLDGASTFENNNADLFF----------DL------------------------------------ 433 (693)
Q Consensus 400 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~----------~l------------------------------------ 433 (693)
..+....+.+.....+.+..+|.+...+. .+
T Consensus 138 ---~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~ 214 (539)
T KOG0548|consen 138 ---LTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDN 214 (539)
T ss_pred ---hhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchh
Confidence 00000001111111112222221110000 00
Q ss_pred ---------------------HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCc
Q 005499 434 ---------------------EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQ 492 (693)
Q Consensus 434 ---------------------~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 492 (693)
...++..|+.+|..+++++ .+. .-+.+.+.+|...|.+.+.+.....+++... ..
T Consensus 215 ~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~i-t~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr--e~ 290 (539)
T KOG0548|consen 215 TEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDI-TYLNNIAAVYLERGKYAECIELCEKAVEVGR--EL 290 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhh-HHHHHHHHHHHhccHHHHhhcchHHHHHHhH--HH
Confidence 3344555555555555555 333 4445555555555555555555555444332 11
Q ss_pred h-------HHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHH
Q 005499 493 G-------PILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKD 565 (693)
Q Consensus 493 ~-------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 565 (693)
. .....+|..+..+++++.|+.+|++++..... ..+..+....++
T Consensus 291 rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt----------------------------~~~ls~lk~~Ek 342 (539)
T KOG0548|consen 291 RADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT----------------------------PDLLSKLKEAEK 342 (539)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC----------------------------HHHHHHHHHHHH
Confidence 1 11122333444445555555555554443211 111112222222
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q 005499 566 VAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALR 645 (693)
Q Consensus 566 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~ 645 (693)
++...+...-++|.-..--...|..++..|+|..|+..|.+++..+|+++..+.+.|.||.++|.+. .|+...+.+++
T Consensus 343 ~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~--~aL~Da~~~ie 420 (539)
T KOG0548|consen 343 ALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYP--EALKDAKKCIE 420 (539)
T ss_pred HHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHH--HHHHHHHHHHh
Confidence 2222222223334434444555777777777777777777777777777777777777777777777 77777777777
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCC
Q 005499 646 IEPTNRKAWYYLGLVHKDDGRIADAADCFQAASMLEESDP 685 (693)
Q Consensus 646 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 685 (693)
++|+...+|..-|.++..+.+|++|++.|+++++++|++.
T Consensus 421 L~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~ 460 (539)
T KOG0548|consen 421 LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNA 460 (539)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhH
Confidence 7777777777777777777777777777777777777653
No 42
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.90 E-value=1.1e-20 Score=173.45 Aligned_cols=343 Identities=14% Similarity=0.019 Sum_probs=255.0
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHH
Q 005499 269 KWDPAVMEHLTYALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLA 348 (693)
Q Consensus 269 p~~~~~~~~l~~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~ 348 (693)
|.+..-...+|..+...|++..|...|..++..+|++..++|..|..|+..|+-.-|+.-+.++++ +.|+...+....
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQR 112 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHh
Confidence 334445556666677777777777777777777777777777777777777777777777777777 447766666666
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChH
Q 005499 349 AKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNAD 428 (693)
Q Consensus 349 a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 428 (693)
|.+.+++|... +|..-|+.+++..|+.... ..++..++.+-... ..-+++..
T Consensus 113 g~vllK~Gele-~A~~DF~~vl~~~~s~~~~--~eaqskl~~~~e~~------------------~l~~ql~s------- 164 (504)
T KOG0624|consen 113 GVVLLKQGELE-QAEADFDQVLQHEPSNGLV--LEAQSKLALIQEHW------------------VLVQQLKS------- 164 (504)
T ss_pred chhhhhcccHH-HHHHHHHHHHhcCCCcchh--HHHHHHHHhHHHHH------------------HHHHHHHH-------
Confidence 66666766666 6777777777666643322 22222221111110 00011100
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCC
Q 005499 429 LFFDLEQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQAL 508 (693)
Q Consensus 429 ~~~~l~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~ 508 (693)
....|+...|+.+...++++.|-+. ..+...+.+|...|+...|+.-+..+-.+.. ++...++.++.+++..|+
T Consensus 165 ---~~~~GD~~~ai~~i~~llEi~~Wda-~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~--DnTe~~ykis~L~Y~vgd 238 (504)
T KOG0624|consen 165 ---ASGSGDCQNAIEMITHLLEIQPWDA-SLRQARAKCYIAEGEPKKAIHDLKQASKLSQ--DNTEGHYKISQLLYTVGD 238 (504)
T ss_pred ---HhcCCchhhHHHHHHHHHhcCcchh-HHHHHHHHHHHhcCcHHHHHHHHHHHHhccc--cchHHHHHHHHHHHhhhh
Confidence 0057899999999999999999998 9999999999999999999999999999998 899999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHH----H
Q 005499 509 PMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEM----L 584 (693)
Q Consensus 509 ~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~----~ 584 (693)
.+.++...++.++++|++...+.....+.+ ..-...-+......++|.++++..++.++.+|..+.+ +
T Consensus 239 ~~~sL~~iRECLKldpdHK~Cf~~YKklkK--------v~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~ 310 (504)
T KOG0624|consen 239 AENSLKEIRECLKLDPDHKLCFPFYKKLKK--------VVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGF 310 (504)
T ss_pred HHHHHHHHHHHHccCcchhhHHHHHHHHHH--------HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeee
Confidence 999999999999999988644322221111 1111222445567899999999999999999985543 4
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 005499 585 HTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYL 657 (693)
Q Consensus 585 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~l 657 (693)
..+..|+...|++.+|+..+.+++.++|+++.++...+.+|.-...|+ .|+..|+++.+.++++..+.-.+
T Consensus 311 r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD--~AI~dye~A~e~n~sn~~~reGl 381 (504)
T KOG0624|consen 311 RVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYD--DAIHDYEKALELNESNTRAREGL 381 (504)
T ss_pred heeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHH--HHHHHHHHHHhcCcccHHHHHHH
Confidence 456778888999999999999999999999999999999999999999 99999999999999987765543
No 43
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.3e-19 Score=168.88 Aligned_cols=267 Identities=19% Similarity=0.199 Sum_probs=214.1
Q ss_pred HhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChHHHHH---H--HhCCHHHHHHHHHHHHHhcCCCc
Q 005499 382 GVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNADLFFD---L--EQRNLSTALRYAKQYIDATGGSV 456 (693)
Q Consensus 382 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~---l--~~~~~~~A~~~~~~al~~~p~~~ 456 (693)
...+..+|.+++..|++ .+|+..|+++..++|.+....-. + ..|++++-.......+.......
T Consensus 232 vhLl~~lak~~~~~Gdn-----------~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta 300 (564)
T KOG1174|consen 232 EHLMMALGKCLYYNGDY-----------FQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTA 300 (564)
T ss_pred HHHHHHHhhhhhhhcCc-----------hHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcch
Confidence 44556666667777777 77777777777777665443322 2 66677766666666666665555
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccc
Q 005499 457 LKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCL 536 (693)
Q Consensus 457 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 536 (693)
.-|+.-+...+..++++.|+.+.+++++.+| .+...+..+|.++...|++++|+-.|+.+..+.|.+
T Consensus 301 -~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~--r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r---------- 367 (564)
T KOG1174|consen 301 -SHWFVHAQLLYDEKKFERALNFVEKCIDSEP--RNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYR---------- 367 (564)
T ss_pred -hhhhhhhhhhhhhhhHHHHHHHHHHHhccCc--ccchHHHhccHHHHhccchHHHHHHHHHHHhcchhh----------
Confidence 6777788888888899999999999999998 788889999999999999999999999988887544
Q ss_pred cchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHH-HHHH-HCCChHHHHHHHHHHHhhCCCC
Q 005499 537 SQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEG-VMHE-GCGQTHEALRAYINALLIEPSY 614 (693)
Q Consensus 537 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg-~~~~-~~g~~~~A~~~~~~al~~~p~~ 614 (693)
.++|-.+..+|...|++.+|...-+.+++..|.++.++..+| .++. .-.--++|.+.+++++++.|.+
T Consensus 368 ----------L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y 437 (564)
T KOG1174|consen 368 ----------LEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIY 437 (564)
T ss_pred ----------HHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCcc
Confidence 688888889999999999999998989888898888888886 4433 3334578999999999999999
Q ss_pred hhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCC
Q 005499 615 VPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASMLEESDP 685 (693)
Q Consensus 615 ~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 685 (693)
..+...++.++...|++. .++.++++.+...|++ ..+..||.++...+.+.+|+++|..|+.++|++.
T Consensus 438 ~~AV~~~AEL~~~Eg~~~--D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 438 TPAVNLIAELCQVEGPTK--DIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred HHHHHHHHHHHHhhCccc--hHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 999999999999999998 9999999999888864 5678899999999999999999999999998874
No 44
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.89 E-value=1.5e-18 Score=176.43 Aligned_cols=591 Identities=18% Similarity=0.108 Sum_probs=396.3
Q ss_pred CcCHHHHHHHhhhccCC---C---HHHHHHHHHHHHhhcCCHHHHHhhhccCCcchhhhhccccchhhhhhhccCCCCCC
Q 005499 36 EGNIQEAESSLREGLSL---N---FEEARALLGRLEYQRGNVEGALRVFDGIDLHAAIQRLQPSFSEKSASKKCRSRSDS 109 (693)
Q Consensus 36 ~g~~~~A~~~~~~~l~~---~---~~~a~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (693)
.....+|+..+-.+|.- + -.++...++...|..|.+.+|++.|.+...++......+
T Consensus 17 ~~~~~~A~~~l~~~L~~~~~~~~~~~ea~~~lakl~~a~~~e~~ai~~~~~s~i~~~~~~~~~----------------- 79 (799)
T KOG4162|consen 17 CNGLSEAIPELHRALHKHNSSKSFVCEAMLILAKLDYACGEERKAIRNFSASGIDNQYSENLP----------------- 79 (799)
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhhhcccHHHHHHHHHHHhhcccccccccc-----------------
Confidence 45578899999988822 1 246778899999999999999999988644433333233
Q ss_pred CccchhhHHHHHHHHHHHH---------------HHHhHhhCChHHHHHHHHHH-------HHHHHHhhh----cCCCCh
Q 005499 110 HVSVSQHAASLVLEAIYLK---------------AKSLQKLGRLTEAANECKSV-------LDAVERIFQ----QGIPDA 163 (693)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~---------------a~~~~~~g~~~~A~~~~~~~-------l~~~~~~~~----~~~~~~ 163 (693)
....+.+.|++..+ +..-.+.|+.++|+..|+.+ +...+.... .+.+..
T Consensus 80 -----~~~~~~l~Ea~~il~~glsle~ee~~~~s~~~~~qr~~~e~al~vFe~~~i~~~~~~~e~~i~~~s~~s~~~~s~ 154 (799)
T KOG4162|consen 80 -----LLDLRLLAEAEAILREGLSLEYEEARALSGRLEYQRGNDEAALRVFEGIDILAITYLQELEIVQNSNSSLRQRSK 154 (799)
T ss_pred -----hhhhhhHHHHHHHHhhhcccchhhhhhhhhhHHHhhcCcHHHHHHhcccchhHHHHHHHHHHHhccCccccCCCc
Confidence 12222333333333 55566778999999998833 111111111 111110
Q ss_pred --h-----hh-hhHHHHHHHHHhhhHH-HHhhcCCchHHHHHHHHHhccc------CCCChhHHHHHHHHHHHHhhhccc
Q 005499 164 --Q-----VD-NRLQETVSRAVELLPE-LWKQVGCDHDALAAYRRAVLSQ------WNLDNECCARIQKRFAVFLLHSGV 228 (693)
Q Consensus 164 --~-----~~-~~~~~~~~~a~~~l~~-~~~~~g~~~~A~~~~~~~l~~~------~~~~~~~~~~~~~~~a~~l~~~~~ 228 (693)
+ +. ...+-+++..+..++. ...+.|++++|...++.++..- ..++.. +....+..++.+...
T Consensus 155 ~~~a~~p~~~~s~~~~~Le~~l~~lk~k~L~~~~~iqea~e~cr~~L~~ve~~~t~~~~~~~---s~~~~l~~vl~~~~~ 231 (799)
T KOG4162|consen 155 ASFAIEPSTVMSAHGAILEAELIKLKAKSLKRLGRIQEAAEECRSVLDIVETKATQGSKDTE---SGALKLQEVLSRAVE 231 (799)
T ss_pred cccccCCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchH---HHHHHHHHHHHHHHH
Confidence 0 01 1334444445554443 3555569999999999887631 011111 112222333222211
Q ss_pred --c-----cCCC-----C-----------------CcCCCCCcccCCChhHHHHHHHHHHHHHHhhcCCCC----cHHHH
Q 005499 229 --E-----AGPP-----S-----------------LGSQVEGSYAPKNNLEEAILLLLILMKKYHLGKIKW----DPAVM 275 (693)
Q Consensus 229 --~-----~~~~-----~-----------------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~----~~~~~ 275 (693)
+ ...+ . ..+.....|.+.+..|+.+.++.+.. . -.|. +..++
T Consensus 232 ~~~~Lw~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~e---s--~i~Re~~~d~ils 306 (799)
T KOG4162|consen 232 LLPILWKKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEE---S--LIPRENIEDAILS 306 (799)
T ss_pred HhHHHhcCCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHh---h--ccccccHHHHHHH
Confidence 0 0000 0 00022357888999988865554331 1 1122 33344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhc
Q 005499 276 EHLTYALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLAAKICSED 355 (693)
Q Consensus 276 ~~l~~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~ 355 (693)
..+.....+.+.+ .+++.+|-.+...+...|+++.+.+.|++++.. .-.....+..++..+...
T Consensus 307 lm~~~~k~r~~~~--------------qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~--~~~~~e~w~~~als~saa 370 (799)
T KOG4162|consen 307 LMLLLRKLRLKKF--------------QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF--SFGEHERWYQLALSYSAA 370 (799)
T ss_pred HHHHHHHHHHhhh--------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh--hhhhHHHHHHHHHHHHHh
Confidence 4433333333322 157778888999999999999999999999884 366777788888777777
Q ss_pred CCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCC-----ChHHH
Q 005499 356 CHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENN-----NADLF 430 (693)
Q Consensus 356 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~ 430 (693)
+... .|+...+..+...+..+.. ...++.-..|..+.+.. ++++.+-.+++..-.. .+..+
T Consensus 371 g~~s-~Av~ll~~~~~~~~~ps~~--s~~Lmasklc~e~l~~~-----------eegldYA~kai~~~~~~~~~l~~~~~ 436 (799)
T KOG4162|consen 371 GSDS-KAVNLLRESLKKSEQPSDI--SVLLMASKLCIERLKLV-----------EEGLDYAQKAISLLGGQRSHLKPRGY 436 (799)
T ss_pred ccch-HHHHHHHhhcccccCCCcc--hHHHHHHHHHHhchhhh-----------hhHHHHHHHHHHHhhhhhhhhhhhHH
Confidence 8877 9999999998877422222 44455555666777888 9999999999863211 12222
Q ss_pred HHH----------------HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchH
Q 005499 431 FDL----------------EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGP 494 (693)
Q Consensus 431 ~~l----------------~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 494 (693)
..+ +.....+++..++++++.+|.++ .+.+.++.-|..+++.+.|.+...++++.++. +++.
T Consensus 437 l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp-~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~-~~~~ 514 (799)
T KOG4162|consen 437 LFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP-LVIFYLALQYAEQRQLTSALDYAREALALNRG-DSAK 514 (799)
T ss_pred HHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC-ccHH
Confidence 222 33445689999999999999999 99999999999999999999999999999765 7899
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccc-----------------hhhhccc------HHHHHH
Q 005499 495 ILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQ-----------------IEDDKVN------EFQVWH 551 (693)
Q Consensus 495 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~-----------------~~~~~~~------~~~~~~ 551 (693)
.|..++.++...+++.+|+.+.+.+++..|.+.........+.. .++..+. .....-
T Consensus 515 ~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~ 594 (799)
T KOG4162|consen 515 AWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLR 594 (799)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhh
Confidence 99999999999999999999999999999886433221111110 0000000 001111
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhh--------C-----C--------CC-----HHHHHHHHHHHHHCCChHHHHHHHH
Q 005499 552 GLANLYSGLSHWKDVAICMGKAREL--------K-----A--------YS-----AEMLHTEGVMHEGCGQTHEALRAYI 605 (693)
Q Consensus 552 ~la~~~~~~~~~~~A~~~~~~al~~--------~-----p--------~~-----~~~~~~lg~~~~~~g~~~~A~~~~~ 605 (693)
..+.......+..+|+....++... . | +. ...|...+..+...++.++|..++.
T Consensus 595 lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~ 674 (799)
T KOG4162|consen 595 LKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLL 674 (799)
T ss_pred hhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 1122222334555666665554422 0 1 11 2357788999999999999999999
Q ss_pred HHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHH--HHHHHHhcccC
Q 005499 606 NALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAAD--CFQAASMLEES 683 (693)
Q Consensus 606 ~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~--~~~~al~l~p~ 683 (693)
++-.++|..+..|+..|.++...|+.. +|...|..++.++|+++.+...+|.++...|+..-|.. .+..+++++|+
T Consensus 675 Ea~~~~~l~~~~~~~~G~~~~~~~~~~--EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~ 752 (799)
T KOG4162|consen 675 EASKIDPLSASVYYLRGLLLEVKGQLE--EAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL 752 (799)
T ss_pred HHHhcchhhHHHHHHhhHHHHHHHhhH--HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC
Confidence 999999999999999999999999999 99999999999999999999999999999999887777 99999999999
Q ss_pred CCCCccc
Q 005499 684 DPIESFS 690 (693)
Q Consensus 684 ~~~~~~~ 690 (693)
+|.++|.
T Consensus 753 n~eaW~~ 759 (799)
T KOG4162|consen 753 NHEAWYY 759 (799)
T ss_pred CHHHHHH
Confidence 9988764
No 45
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.89 E-value=1.8e-20 Score=172.10 Aligned_cols=328 Identities=15% Similarity=0.060 Sum_probs=279.4
Q ss_pred CCCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCcchh
Q 005499 302 VFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLAAKICSEDCHLAAEGIQYARTALSNAQGKDEHLK 381 (693)
Q Consensus 302 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 381 (693)
+|.+..-.+.+|..++..|++..|+..|..++. .+|++..+++..+.+++..|+.. -|+.-+.++++..| +.
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve--~dp~~Y~aifrRaT~yLAmGksk-~al~Dl~rVlelKp---DF-- 105 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVE--GDPNNYQAIFRRATVYLAMGKSK-AALQDLSRVLELKP---DF-- 105 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc--CCchhHHHHHHHHHHHhhhcCCc-cchhhHHHHHhcCc---cH--
Confidence 345677789999999999999999999999999 78999999999999999999988 99999999999988 66
Q ss_pred HhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChHHHHHHHhCCHHHHHHHHHHHHHhcCCCcHHHHH
Q 005499 382 GVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNADLFFDLEQRNLSTALRYAKQYIDATGGSVLKGWK 461 (693)
Q Consensus 382 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~A~~~~~~al~~~p~~~~~~~~ 461 (693)
..+....|.++..+|.+ ++|...|...+..+|++.... +| ..+...+. .+ ..+.
T Consensus 106 ~~ARiQRg~vllK~Gel-----------e~A~~DF~~vl~~~~s~~~~~---------ea---qskl~~~~-e~--~~l~ 159 (504)
T KOG0624|consen 106 MAARIQRGVVLLKQGEL-----------EQAEADFDQVLQHEPSNGLVL---------EA---QSKLALIQ-EH--WVLV 159 (504)
T ss_pred HHHHHHhchhhhhcccH-----------HHHHHHHHHHHhcCCCcchhH---------HH---HHHHHhHH-HH--HHHH
Confidence 88899999999999999 999999999999999765321 11 11111110 01 3334
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhh
Q 005499 462 LLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIED 541 (693)
Q Consensus 462 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 541 (693)
.....++..|++..|+..+...++..| .+...+...+.+|...|++..|+..++.+-++.
T Consensus 160 ~ql~s~~~~GD~~~ai~~i~~llEi~~--Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs------------------ 219 (504)
T KOG0624|consen 160 QQLKSASGSGDCQNAIEMITHLLEIQP--WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS------------------ 219 (504)
T ss_pred HHHHHHhcCCchhhHHHHHHHHHhcCc--chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc------------------
Confidence 455566778999999999999999999 899999999999999999999999999998886
Q ss_pred hcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHH------------HHHHHHHHCCChHHHHHHHHHHHh
Q 005499 542 DKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLH------------TEGVMHEGCGQTHEALRAYINALL 609 (693)
Q Consensus 542 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~------------~lg~~~~~~g~~~~A~~~~~~al~ 609 (693)
.++.+.++.++.+++..|+.+.++...+++++++|++-..+- .-+.-....++|.++++..++.++
T Consensus 220 --~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk 297 (504)
T KOG0624|consen 220 --QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK 297 (504)
T ss_pred --ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 344789999999999999999999999999999998754321 123345677899999999999999
Q ss_pred hCCCChhH----HHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCC
Q 005499 610 IEPSYVPC----KVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASMLEESDP 685 (693)
Q Consensus 610 ~~p~~~~~----~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 685 (693)
.+|..+.. ...+..|+..-|++. +|+..+.+++..+|++..++...+.+|.....|+.|+..|++|.+.+++|.
T Consensus 298 ~ep~~~~ir~~~~r~~c~C~~~d~~~~--eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 298 NEPEETMIRYNGFRVLCTCYREDEQFG--EAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred cCCcccceeeeeeheeeecccccCCHH--HHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 99985543 445677788888888 999999999999999999999999999999999999999999999999886
Q ss_pred CC
Q 005499 686 IE 687 (693)
Q Consensus 686 ~~ 687 (693)
.+
T Consensus 376 ~~ 377 (504)
T KOG0624|consen 376 RA 377 (504)
T ss_pred HH
Confidence 53
No 46
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.88 E-value=3e-19 Score=184.45 Aligned_cols=360 Identities=12% Similarity=0.108 Sum_probs=281.0
Q ss_pred cHHHHHHH--HHHHHhcCCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHH
Q 005499 271 DPAVMEHL--TYALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLA 348 (693)
Q Consensus 271 ~~~~~~~l--~~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~ 348 (693)
.+.+...+ ++.++..|+++.|.+.+.++++.+|..+..|+.+|.+|-+.|+.+++....-.+.. ++|.+...|..+
T Consensus 136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~e~W~~l 213 (895)
T KOG2076|consen 136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDYELWKRL 213 (895)
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCChHHHHHH
Confidence 34444444 44566679999999999999999999999999999999999999999999888888 679999999999
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCC-h
Q 005499 349 AKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNN-A 427 (693)
Q Consensus 349 a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~ 427 (693)
+....+++++. +|.-++.++++..| .. ..........|.+.|+. ..|+..|.+++...|.. .
T Consensus 214 adls~~~~~i~-qA~~cy~rAI~~~p---~n--~~~~~ers~L~~~~G~~-----------~~Am~~f~~l~~~~p~~d~ 276 (895)
T KOG2076|consen 214 ADLSEQLGNIN-QARYCYSRAIQANP---SN--WELIYERSSLYQKTGDL-----------KRAMETFLQLLQLDPPVDI 276 (895)
T ss_pred HHHHHhcccHH-HHHHHHHHHHhcCC---cc--hHHHHHHHHHHHHhChH-----------HHHHHHHHHHHhhCCchhH
Confidence 99998998888 99999999999998 44 55577778889999999 99999999999998822 1
Q ss_pred H-----HHHHH----HhCCHHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--c-------
Q 005499 428 D-----LFFDL----EQRNLSTALRYAKQYIDATG--GSVLKGWKLLALVLSAQQRFSEAEVVTDAALDE--T------- 487 (693)
Q Consensus 428 ~-----~~~~l----~~~~~~~A~~~~~~al~~~p--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~------- 487 (693)
. ++... ..++-+.|++.+..++.... ... ..+..++.++.....++.|...+...... .
T Consensus 277 er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~-ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~ 355 (895)
T KOG2076|consen 277 ERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASL-EDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWD 355 (895)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccc-cHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhh
Confidence 1 11111 55556899999999888332 222 55778999999999999998887765440 0
Q ss_pred ---------------CCC--CchHH-HHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHH
Q 005499 488 ---------------TKW--EQGPI-LRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQV 549 (693)
Q Consensus 488 ---------------p~~--~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (693)
|+. -+..+ ...++.+....++..+++..+..--...| ...+..
T Consensus 356 ~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~-------------------~d~~dL 416 (895)
T KOG2076|consen 356 TDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWV-------------------SDDVDL 416 (895)
T ss_pred hhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCCh-------------------hhhHHH
Confidence 000 11222 44444445555555555554433322222 234789
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHh
Q 005499 550 WHGLANLYSGLSHWKDVAICMGKARELKAY-SAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKL 628 (693)
Q Consensus 550 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 628 (693)
++.++.++...|++.+|+.+|..+....+. +..+|+.+|.||..+|.+++|+++|++++...|++.++...|+.++.++
T Consensus 417 ~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~ 496 (895)
T KOG2076|consen 417 YLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQL 496 (895)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhc
Confidence 999999999999999999999999887654 4679999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhhCCC---------CHHHHHHHHHHHHHcCChHHHH
Q 005499 629 GPKALPVARSLLSDALRIEPT---------NRKAWYYLGLVHKDDGRIADAA 671 (693)
Q Consensus 629 g~~~l~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~~A~ 671 (693)
|+.+ +|.+.+.....-++. ..........++...|+.++=+
T Consensus 497 g~~E--kalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 497 GNHE--KALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred CCHH--HHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 9999 999999887633322 2345677899999999988733
No 47
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.87 E-value=8.9e-22 Score=193.88 Aligned_cols=259 Identities=18% Similarity=0.137 Sum_probs=124.4
Q ss_pred HHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHH-hc-CCCChHHHHHH-----HhCCHHHHHHHHHHHHHhcCCCcHH
Q 005499 386 RMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGAS-TF-ENNNADLFFDL-----EQRNLSTALRYAKQYIDATGGSVLK 458 (693)
Q Consensus 386 ~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~-~p~~~~~~~~l-----~~~~~~~A~~~~~~al~~~p~~~~~ 458 (693)
+.++.++...|++ ++|++.+.+.+ .. +|+++..|..+ ..++++.|+..|++++..++.++ .
T Consensus 12 l~~A~~~~~~~~~-----------~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~-~ 79 (280)
T PF13429_consen 12 LRLARLLYQRGDY-----------EKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANP-Q 79 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccc-----------cccccccccccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence 4668999999999 99999997665 44 47788777665 78999999999999999999887 8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccc
Q 005499 459 GWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQ 538 (693)
Q Consensus 459 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 538 (693)
.+..++.+ ...+++++|+.+++++.+..+ ++..+.....++...++++++...++++.... .
T Consensus 80 ~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~---~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~-~------------- 141 (280)
T PF13429_consen 80 DYERLIQL-LQDGDPEEALKLAEKAYERDG---DPRYLLSALQLYYRLGDYDEAEELLEKLEELP-A------------- 141 (280)
T ss_dssp ------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---------------
T ss_pred cccccccc-ccccccccccccccccccccc---ccchhhHHHHHHHHHhHHHHHHHHHHHHHhcc-C-------------
Confidence 88888888 799999999999999888766 56677788889999999999999999977532 1
Q ss_pred hhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHH
Q 005499 539 IEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCK 618 (693)
Q Consensus 539 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 618 (693)
.+.++..|..+|.++.+.|++++|+.+|+++++.+|+++.++..++.++...|+++++...++......|+++..+
T Consensus 142 ----~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~ 217 (280)
T PF13429_consen 142 ----APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLW 217 (280)
T ss_dssp ------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHC
T ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHH
Confidence 1455789999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 005499 619 VLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASML 680 (693)
Q Consensus 619 ~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 680 (693)
..+|.++..+|+++ +|+.+|+++++.+|+++.++..+|.++...|+.++|..++++++..
T Consensus 218 ~~la~~~~~lg~~~--~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 218 DALAAAYLQLGRYE--EALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHHHHHT-HH--HHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred HHHHHHhccccccc--cccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999 9999999999999999999999999999999999999999998764
No 48
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.7e-18 Score=169.45 Aligned_cols=383 Identities=12% Similarity=0.040 Sum_probs=273.7
Q ss_pred CCCCCcccCCChhHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCcHHHHHHHHHHH
Q 005499 237 SQVEGSYAPKNNLEEAILLLLILMKKYHLGKIKWDPAVMEHLTYALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCY 316 (693)
Q Consensus 237 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~ 316 (693)
++-...|.+.+.|++|+.-- .......|.=+..|..+|.++...|+|++|+..|++.|+..|++..+...++.++
T Consensus 40 Snrsaa~a~~~~~~~al~da-----~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 40 SNRSAAYASLGSYEKALKDA-----TKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred cchHHHHHHHhhHHHHHHHH-----HHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 34556788889999987533 3445567888889999999999999999999999999999999999999998887
Q ss_pred HHCCCc---------------------HHHHHHHHHHhhcc-CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHH-----
Q 005499 317 SAIGQN---------------------DAALNLLRKSLHKH-ERPNDLMALLLAAKICSEDCHLAAEGIQYARTA----- 369 (693)
Q Consensus 317 ~~~g~~---------------------~~A~~~~~~~l~~~-~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~a----- 369 (693)
...-.. ......|..++... .+|.+...++. ..... .+.-.+..+
T Consensus 115 ~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~-------d~r~m-~a~~~l~~~~~~~~ 186 (539)
T KOG0548|consen 115 LEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN-------DPRLM-KADGQLKGVDELLF 186 (539)
T ss_pred hHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc-------cHHHH-HHHHHHhcCccccc
Confidence 222100 00111111111110 11222111110 00000 010000000
Q ss_pred ----HHh-----hcC---------CCcc-------hhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCC
Q 005499 370 ----LSN-----AQG---------KDEH-------LKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFEN 424 (693)
Q Consensus 370 ----l~~-----~~~---------~~~~-------~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 424 (693)
... .|. ..+. ..+.....+|.......++ ..|++.|.+++.++
T Consensus 187 ~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f-----------~~a~q~y~~a~el~- 254 (539)
T KOG0548|consen 187 YASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDF-----------ETAIQHYAKALELA- 254 (539)
T ss_pred cccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhH-----------HHHHHHHHHHHhHh-
Confidence 000 000 0000 0134566778888888888 99999999999998
Q ss_pred CChHHHHHH-----HhCCHHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCch
Q 005499 425 NNADLFFDL-----EQRNLSTALRYAKQYIDATGGSV------LKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQG 493 (693)
Q Consensus 425 ~~~~~~~~l-----~~~~~~~A~~~~~~al~~~p~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 493 (693)
.+...+... ..|.+.+.+..+..+++...... ..+...+|..+...++++.|+..|++++..+. .
T Consensus 255 ~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~R--t-- 330 (539)
T KOG0548|consen 255 TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHR--T-- 330 (539)
T ss_pred hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhc--C--
Confidence 665544444 77888888888887776554332 13344567788888999999999999988776 2
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 005499 494 PILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKA 573 (693)
Q Consensus 494 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 573 (693)
..+.......++++.......-.+|.. ..--..-|..++..|+|..|+..|.++
T Consensus 331 ------~~~ls~lk~~Ek~~k~~e~~a~~~pe~--------------------A~e~r~kGne~Fk~gdy~~Av~~YteA 384 (539)
T KOG0548|consen 331 ------PDLLSKLKEAEKALKEAERKAYINPEK--------------------AEEEREKGNEAFKKGDYPEAVKHYTEA 384 (539)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHhhChhH--------------------HHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 444555566677777666666665433 445556699999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHH
Q 005499 574 RELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKA 653 (693)
Q Consensus 574 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~ 653 (693)
+..+|+++..+.+.|.||...|.+..|+...+.+++++|+...+|..-|.++..+.+|+ .|.+.|+++++.+|.+..+
T Consensus 385 Ikr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~yd--kAleay~eale~dp~~~e~ 462 (539)
T KOG0548|consen 385 IKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYD--KALEAYQEALELDPSNAEA 462 (539)
T ss_pred HhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhcCchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHH
Q 005499 654 WYYLGLVHKDDGRIADAADCFQA 676 (693)
Q Consensus 654 ~~~lg~~~~~~g~~~~A~~~~~~ 676 (693)
...+..+...+.......+..++
T Consensus 463 ~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 463 IDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHHHHHHHHhhcCCCHHHHHHh
Confidence 99888888875444445555555
No 49
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=6.2e-17 Score=152.66 Aligned_cols=323 Identities=14% Similarity=0.096 Sum_probs=242.7
Q ss_pred CCcHHHHHHH-HHHHHhcCC--HHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHH
Q 005499 269 KWDPAVMEHL-TYALSLCSQ--TSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMAL 345 (693)
Q Consensus 269 p~~~~~~~~l-~~~~~~~g~--~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~ 345 (693)
|..++.+-.+ +.+.+..++ +..+..++-.....-+++.+....+|.+++..|++.+|+..|+++.. .+|......
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~M 269 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEAM 269 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhhH
Confidence 4444443222 333333444 44444455555566678888888889999999999999999988888 678888877
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCC
Q 005499 346 LLAAKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENN 425 (693)
Q Consensus 346 ~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 425 (693)
-..|.+....++.. +-.......+.... .. ..-|+.-+...+
T Consensus 270 D~Ya~LL~~eg~~e-~~~~L~~~Lf~~~~---~t--a~~wfV~~~~l~-------------------------------- 311 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCE-QDSALMDYLFAKVK---YT--ASHWFVHAQLLY-------------------------------- 311 (564)
T ss_pred HHHHHHHHhccCHh-hHHHHHHHHHhhhh---cc--hhhhhhhhhhhh--------------------------------
Confidence 77777766666665 33333333333322 11 222333333333
Q ss_pred ChHHHHHHHhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHH
Q 005499 426 NADLFFDLEQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIA 505 (693)
Q Consensus 426 ~~~~~~~l~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 505 (693)
..+++..|+.+.+++++.+|.+. .++...|.++.+.|+.++|+-.|+.+..+.| .....|..+..+|..
T Consensus 312 --------~~K~~~rAL~~~eK~I~~~~r~~-~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap--~rL~~Y~GL~hsYLA 380 (564)
T KOG1174|consen 312 --------DEKKFERALNFVEKCIDSEPRNH-EALILKGRLLIALERHTQAVIAFRTAQMLAP--YRLEIYRGLFHSYLA 380 (564)
T ss_pred --------hhhhHHHHHHHHHHHhccCcccc-hHHHhccHHHHhccchHHHHHHHHHHHhcch--hhHHHHHHHHHHHHh
Confidence 34455666666666667777887 9999999999999999999999999999999 889999999999999
Q ss_pred hCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHH-HHHH-hCCChHHHHHHHHHHHhhCCCCHHH
Q 005499 506 QALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLA-NLYS-GLSHWKDVAICMGKARELKAYSAEM 583 (693)
Q Consensus 506 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~~~-~~~~~~~A~~~~~~al~~~p~~~~~ 583 (693)
.|++.+|....+.++...|.+ +.++..+| .+++ .-.--++|...+++++++.|....+
T Consensus 381 ~~~~kEA~~~An~~~~~~~~s--------------------A~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~A 440 (564)
T KOG1174|consen 381 QKRFKEANALANWTIRLFQNS--------------------ARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPA 440 (564)
T ss_pred hchHHHHHHHHHHHHHHhhcc--------------------hhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHH
Confidence 999999999999999888555 56777775 4443 3334578999999999999999999
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 005499 584 LHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKD 663 (693)
Q Consensus 584 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 663 (693)
...++.++...|.++.++..+++.+...|+. ..+..||.++...+.+. +|..+|..+++++|.+..+.-.+-.+-..
T Consensus 441 V~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q--~am~~y~~ALr~dP~~~~sl~Gl~~lEK~ 517 (564)
T KOG1174|consen 441 VNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQ--KAMEYYYKALRQDPKSKRTLRGLRLLEKS 517 (564)
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHH--HHHHHHHHHHhcCccchHHHHHHHHHHhc
Confidence 9999999999999999999999999988764 57888999999999988 99999999999999998877766655544
Q ss_pred cC
Q 005499 664 DG 665 (693)
Q Consensus 664 ~g 665 (693)
..
T Consensus 518 ~~ 519 (564)
T KOG1174|consen 518 DD 519 (564)
T ss_pred cC
Confidence 43
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.84 E-value=2.4e-18 Score=178.17 Aligned_cols=249 Identities=11% Similarity=0.001 Sum_probs=189.3
Q ss_pred HHHHHHHHHHHhcCCCChH-HHH-----HHHhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005499 410 SEALKSLDGASTFENNNAD-LFF-----DLEQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAA 483 (693)
Q Consensus 410 ~~A~~~~~~al~~~p~~~~-~~~-----~l~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 483 (693)
+.|..+|.++.+..|++.. +.. .+..|+++.|+..++++++..|+++ .++..++.++...|++++|...+.+.
T Consensus 135 ~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~-~~l~ll~~~~~~~~d~~~a~~~l~~l 213 (409)
T TIGR00540 135 ARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHK-EVLKLAEEAYIRSGAWQALDDIIDNM 213 (409)
T ss_pred HHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5555555555544444421 111 1156667777777777777788888 99999999999999999999999999
Q ss_pred HhhcCCCCchHHH----HHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHh
Q 005499 484 LDETTKWEQGPIL----RLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSG 559 (693)
Q Consensus 484 l~~~p~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 559 (693)
.+... .+.... .....-....+..+++.+.+.++....|... +.++..+..++..+..
T Consensus 214 ~k~~~--~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~----------------~~~~~l~~~~a~~l~~ 275 (409)
T TIGR00540 214 AKAGL--FDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHR----------------RHNIALKIALAEHLID 275 (409)
T ss_pred HHcCC--CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHH----------------hCCHHHHHHHHHHHHH
Confidence 87744 222222 1112222344445555667777777665432 4568999999999999
Q ss_pred CCChHHHHHHHHHHHhhCCCCHHHH--HHHHHHHHHCCChHHHHHHHHHHHhhCCCCh--hHHHHHHHHHHHhCCCChHH
Q 005499 560 LSHWKDVAICMGKARELKAYSAEML--HTEGVMHEGCGQTHEALRAYINALLIEPSYV--PCKVLVGSLFSKLGPKALPV 635 (693)
Q Consensus 560 ~~~~~~A~~~~~~al~~~p~~~~~~--~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~l~~ 635 (693)
.|++++|...++++++..|++.... ..........++.+.+++.++++++.+|+++ ..+..+|+++.+.|+++ +
T Consensus 276 ~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~--~ 353 (409)
T TIGR00540 276 CDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFI--E 353 (409)
T ss_pred CCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHH--H
Confidence 9999999999999999999987532 2333344456888999999999999999999 88999999999999999 9
Q ss_pred HHHHHH--HHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 005499 636 ARSLLS--DALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASML 680 (693)
Q Consensus 636 A~~~~~--~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 680 (693)
|.++|+ .+++..|++.. +..+|.++...|+.++|.++|++++..
T Consensus 354 A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 354 AADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999 57778887655 569999999999999999999999764
No 51
>PRK12370 invasion protein regulator; Provisional
Probab=99.84 E-value=1.4e-18 Score=186.77 Aligned_cols=244 Identities=13% Similarity=-0.000 Sum_probs=208.8
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHH--------------HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHH
Q 005499 410 SEALKSLDGASTFENNNADLFFDL--------------EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSE 475 (693)
Q Consensus 410 ~~A~~~~~~al~~~p~~~~~~~~l--------------~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~ 475 (693)
++|+..|+++++++|+++.++..+ ..+++++|+..++++++++|+++ .++..+|.++...|++++
T Consensus 278 ~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~-~a~~~lg~~~~~~g~~~~ 356 (553)
T PRK12370 278 QQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNP-QALGLLGLINTIHSEYIV 356 (553)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHccCHHH
Confidence 899999999999999998877555 22458999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHH
Q 005499 476 AEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLAN 555 (693)
Q Consensus 476 A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 555 (693)
|+..++++++.+| +++.+++.+|.++...|++++|+..++++++++|.+ +..+..++.
T Consensus 357 A~~~~~~Al~l~P--~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~--------------------~~~~~~~~~ 414 (553)
T PRK12370 357 GSLLFKQANLLSP--ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR--------------------AAAGITKLW 414 (553)
T ss_pred HHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC--------------------hhhHHHHHH
Confidence 9999999999999 899999999999999999999999999999998654 345555666
Q ss_pred HHHhCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChH
Q 005499 556 LYSGLSHWKDVAICMGKARELK-AYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALP 634 (693)
Q Consensus 556 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~ 634 (693)
++...|++++|+..+++++... |+++..+..+|.++...|++++|+..+.+.....|.+..++..++..|...| +
T Consensus 415 ~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~-- 490 (553)
T PRK12370 415 ITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--E-- 490 (553)
T ss_pred HHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--H--
Confidence 7778999999999999999875 7888999999999999999999999999999999998899999999999888 4
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Q 005499 635 VARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASMLE 681 (693)
Q Consensus 635 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 681 (693)
+|...+++.++..-..+.-......++.-.|+.+.+..+ +++.+.+
T Consensus 491 ~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 491 RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 677777776654333222223388888889998888877 7666543
No 52
>PRK12370 invasion protein regulator; Provisional
Probab=99.83 E-value=7.8e-19 Score=188.69 Aligned_cols=218 Identities=12% Similarity=-0.030 Sum_probs=197.7
Q ss_pred CCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc---------CChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHh
Q 005499 436 RNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQ---------QRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQ 506 (693)
Q Consensus 436 ~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 506 (693)
+++++|+..|+++++++|+++ .++..+|.++... +++++|+..++++++.+| +++.++..+|.++...
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a-~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP--~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSI-APYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH--NNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccH-HHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHc
Confidence 457899999999999999998 9999999887644 348999999999999999 8999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHH
Q 005499 507 ALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHT 586 (693)
Q Consensus 507 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 586 (693)
|++++|+..|+++++.+|++ +.+++.+|.++...|++++|+..++++++++|.++..++.
T Consensus 352 g~~~~A~~~~~~Al~l~P~~--------------------~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~ 411 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPIS--------------------ADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGIT 411 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCC--------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHH
Confidence 99999999999999998555 6899999999999999999999999999999999888777
Q ss_pred HHHHHHHCCChHHHHHHHHHHHhhC-CCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 005499 587 EGVMHEGCGQTHEALRAYINALLIE-PSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDG 665 (693)
Q Consensus 587 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 665 (693)
++.++...|++++|+..+++++... |+++.++..+|.++..+|+++ +|+..+.+.....|.+..++..++.+|...|
T Consensus 412 ~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~--eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 412 KLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHE--LARKLTKEISTQEITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHH--HHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence 7878888999999999999999875 788889999999999999999 9999999999999999999999999999988
Q ss_pred ChHHHHHHHHHHHhc
Q 005499 666 RIADAADCFQAASML 680 (693)
Q Consensus 666 ~~~~A~~~~~~al~l 680 (693)
+ +|...+++.++.
T Consensus 490 ~--~a~~~l~~ll~~ 502 (553)
T PRK12370 490 E--RALPTIREFLES 502 (553)
T ss_pred H--HHHHHHHHHHHH
Confidence 5 777777666553
No 53
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.83 E-value=3.7e-17 Score=169.87 Aligned_cols=564 Identities=14% Similarity=0.039 Sum_probs=367.0
Q ss_pred hhhhhcccCCcCHHHHHHHhhhcc--CCCHHHHHHHHHHHHhhcCCHHHHHhhhccCCcchhhhhccccchhhhhhhccC
Q 005499 27 AAEVEAKLDEGNIQEAESSLREGL--SLNFEEARALLGRLEYQRGNVEGALRVFDGIDLHAAIQRLQPSFSEKSASKKCR 104 (693)
Q Consensus 27 ~~~~~~~~~~g~~~~A~~~~~~~l--~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (693)
+.+|-.|+..++.-.|+.+|+.++ +|++-++|.-||.+|...|.|..|++.|+++..-....
T Consensus 566 ~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s---------------- 629 (1238)
T KOG1127|consen 566 VQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS---------------- 629 (1238)
T ss_pred hhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh----------------
Confidence 448999999999999999999999 88888999999999999999999999999974221000
Q ss_pred CCCCCCccchhhHHHHHHHHHHHHHHHhHhhCChHHHHHHHHHHHHHHHHhhhcCCCChhhhhhHHHHHHHHHhhhHHHH
Q 005499 105 SRSDSHVSVSQHAASLVLEAIYLKAKSLQKLGRLTEAANECKSVLDAVERIFQQGIPDAQVDNRLQETVSRAVELLPELW 184 (693)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~ 184 (693)
.-+.|..+...+-.|+|.+|+..+..++.......+. ...+++++ .+++..+
T Consensus 630 -----------------~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~-------q~gLaE~~----ir~akd~ 681 (1238)
T KOG1127|consen 630 -----------------KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTG-------QNGLAESV----IRDAKDS 681 (1238)
T ss_pred -----------------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-------hhhHHHHH----HHHHHHH
Confidence 1235788999999999999999999988765443221 11222222 2223334
Q ss_pred hhcCCchHHHHHHHHHhcccCCC-Chh-HHHHHHHHHHHH---hhhcccccCCCCCcC------CCC-CcccCCChhHHH
Q 005499 185 KQVGCDHDALAAYRRAVLSQWNL-DNE-CCARIQKRFAVF---LLHSGVEAGPPSLGS------QVE-GSYAPKNNLEEA 252 (693)
Q Consensus 185 ~~~g~~~~A~~~~~~~l~~~~~~-~~~-~~~~~~~~~a~~---l~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~a 252 (693)
...|=..+|...+++.++.-... ... ........++.- .+... +...|+... ++. ..+.+.++
T Consensus 682 ~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~-e~~~vn~h~l~il~~q~e~~~~l~~~d---- 756 (1238)
T KOG1127|consen 682 AITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQE-EPSIVNMHYLIILSKQLEKTGALKKND---- 756 (1238)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHh-cccchHHHHHHHHHHHHHhcccCcchh----
Confidence 44555566666666665531000 000 000000001100 01111 011111111 000 11222222
Q ss_pred HHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHh------cCC--HHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHCCCcHH
Q 005499 253 ILLLLILMKKYHLGKIKWDPAVMEHLTYALSL------CSQ--TSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDA 324 (693)
Q Consensus 253 ~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~------~g~--~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~ 324 (693)
+..+.....-..++. ..++..|+.||..|.+ .+. ...|+.++.++++...++...|..+|.. ...|++.-
T Consensus 757 ~l~Lg~~c~~~hlsl-~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~ 834 (1238)
T KOG1127|consen 757 LLFLGYECGIAHLSL-AIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVAC 834 (1238)
T ss_pred HHHHHHHHhhHHHHH-hhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhh
Confidence 111100000000010 1235567777776665 222 3468999999999999999999999988 66699999
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCChHH
Q 005499 325 ALNLLRKSLHKHERPNDLMALLLAAKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYE 404 (693)
Q Consensus 325 A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~ 404 (693)
|..+|-+.+. ..|.+...++.+|.++.+..+.. .|...+.++..+.| .+ ...|...+.+....|+.
T Consensus 835 aQHCfIks~~--sep~~~~~W~NlgvL~l~n~d~E-~A~~af~~~qSLdP---~n--l~~WlG~Ali~eavG~i------ 900 (1238)
T KOG1127|consen 835 AQHCFIKSRF--SEPTCHCQWLNLGVLVLENQDFE-HAEPAFSSVQSLDP---LN--LVQWLGEALIPEAVGRI------ 900 (1238)
T ss_pred hhhhhhhhhh--ccccchhheeccceeEEecccHH-HhhHHHHhhhhcCc---hh--hHHHHHHHHhHHHHHHH------
Confidence 9999999998 56999999999999999888888 99999999999988 55 77788888888888988
Q ss_pred HhHHHHHHHHHHHHHHhcCCCC---hHHHHHH-------HhCCHHH----------HHHHHHHHHHhcCCCcHHHHHHHH
Q 005499 405 RSRLQSEALKSLDGASTFENNN---ADLFFDL-------EQRNLST----------ALRYAKQYIDATGGSVLKGWKLLA 464 (693)
Q Consensus 405 ~~~~~~~A~~~~~~al~~~p~~---~~~~~~l-------~~~~~~~----------A~~~~~~al~~~p~~~~~~~~~la 464 (693)
-++...|.....+.... +...+.+ ..|+++. |--.+.+.+...|+.. .++...|
T Consensus 901 -----i~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~-fAy~~~g 974 (1238)
T KOG1127|consen 901 -----IERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLC-FAYAANG 974 (1238)
T ss_pred -----HHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchh-HHHHHHH
Confidence 88888887744332221 1111111 4444444 3344555566789888 9999999
Q ss_pred HHHHHcCChHHHHHHHHHHHhh-----cCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccch
Q 005499 465 LVLSAQQRFSEAEVVTDAALDE-----TTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQI 539 (693)
Q Consensus 465 ~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 539 (693)
.....++.+..|.+...+++.. +.. ....+--..|++++..|+++.|...+...-...
T Consensus 975 stlEhL~ey~~a~ela~RliglLe~k~d~s-qynvak~~~gRL~lslgefe~A~~a~~~~~~ev---------------- 1037 (1238)
T KOG1127|consen 975 STLEHLEEYRAALELATRLIGLLELKLDES-QYNVAKPDAGRLELSLGEFESAKKASWKEWMEV---------------- 1037 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhhhhhhhhhhhhhcchhhHhhhhcccchhH----------------
Confidence 9999999999999988887653 111 233366678999999999997766554432211
Q ss_pred hhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 005499 540 EDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAE---MLHTEGVMHEGCGQTHEALRAYINALLIEPSYVP 616 (693)
Q Consensus 540 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 616 (693)
.+-........+-.|+++++.+.|++++.+...+.. .....+.+....+.-+.|...+-++....|.+..
T Consensus 1038 -------dEdi~gt~l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~~~~~ 1110 (1238)
T KOG1127|consen 1038 -------DEDIRGTDLTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSKVQAS 1110 (1238)
T ss_pred -------HHHHhhhhHHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhCccchh
Confidence 111122222336788999999999999988654433 4555666677788889999999999999998888
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCC
Q 005499 617 CKVLVGSLFSKLGPKALPVARSLLSDAL---RIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASMLEESDPIE 687 (693)
Q Consensus 617 ~~~~la~~~~~~g~~~l~~A~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 687 (693)
.+..++.++.-..+-. ......++.. +..--+-..-...-.+|..+|+-..-....++++..+|.+|-.
T Consensus 1111 sll~L~A~~ild~da~--~ssaileel~kl~k~e~~~~~~~ll~e~i~~~~~r~~~vk~~~qr~~h~~P~~~~~ 1182 (1238)
T KOG1127|consen 1111 SLLPLPAVYILDADAH--GSSAILEELEKLLKLEWFCWPPGLLKELIYALQGRSVAVKKQIQRAVHSNPGDPAL 1182 (1238)
T ss_pred hHHHHHHHHHHhhhhh--hhHHHHHHHHHhhhhHHhccChhHHHHHHHHHhhhhHHHHHHHHHHHhcCCCChHH
Confidence 8888888877665544 3222232222 2111122223445667778888887888888888888887743
No 54
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.82 E-value=3.2e-18 Score=168.56 Aligned_cols=220 Identities=10% Similarity=-0.080 Sum_probs=169.3
Q ss_pred CCHHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHH
Q 005499 436 RNLSTALRYAKQYIDA---TGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDA 512 (693)
Q Consensus 436 ~~~~~A~~~~~~al~~---~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A 512 (693)
+..+.++..+.+++.. +|......|+.+|.++...|++++|+..|+++++.+| +++.+|..+|.++...|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P--~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP--DMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHCCCHHHH
Confidence 4456666666666653 3333226788999999999999999999999999999 8899999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 005499 513 IETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHE 592 (693)
Q Consensus 513 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 592 (693)
+..|+++++++|++ ..+|.++|.++...|++++|+..++++++.+|+++.... ...+..
T Consensus 118 ~~~~~~Al~l~P~~--------------------~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~-~~~l~~ 176 (296)
T PRK11189 118 YEAFDSVLELDPTY--------------------NYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRAL-WLYLAE 176 (296)
T ss_pred HHHHHHHHHhCCCC--------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHH
Confidence 99999999988544 688999999999999999999999999999998874222 123345
Q ss_pred HCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHH-------hhCCCCHHHHHHHHHHHHHcC
Q 005499 593 GCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDAL-------RIEPTNRKAWYYLGLVHKDDG 665 (693)
Q Consensus 593 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al-------~~~p~~~~~~~~lg~~~~~~g 665 (693)
..+++++|+..|.+.+...+.. .|. .+.++..+|+.. ++ ..+..+. ++.|..+++|+++|.++...|
T Consensus 177 ~~~~~~~A~~~l~~~~~~~~~~--~~~-~~~~~~~lg~~~--~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g 250 (296)
T PRK11189 177 SKLDPKQAKENLKQRYEKLDKE--QWG-WNIVEFYLGKIS--EE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLG 250 (296)
T ss_pred ccCCHHHHHHHHHHHHhhCCcc--ccH-HHHHHHHccCCC--HH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCC
Confidence 6778999999998776543322 222 456667788876 44 2333333 456667789999999999999
Q ss_pred ChHHHHHHHHHHHhcccCC
Q 005499 666 RIADAADCFQAASMLEESD 684 (693)
Q Consensus 666 ~~~~A~~~~~~al~l~p~~ 684 (693)
++++|+.+|++|++++|.+
T Consensus 251 ~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 251 DLDEAAALFKLALANNVYN 269 (296)
T ss_pred CHHHHHHHHHHHHHhCCch
Confidence 9999999999999998743
No 55
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.82 E-value=3.9e-17 Score=169.72 Aligned_cols=557 Identities=11% Similarity=-0.016 Sum_probs=357.8
Q ss_pred CcCHHHHHHHhhhccCCCHHHHHHHHHHHHhhcCCHHHHHhhhccCCcchhhhhccccchhhhhhhccCCCCCCCccchh
Q 005499 36 EGNIQEAESSLREGLSLNFEEARALLGRLEYQRGNVEGALRVFDGIDLHAAIQRLQPSFSEKSASKKCRSRSDSHVSVSQ 115 (693)
Q Consensus 36 ~g~~~~A~~~~~~~l~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (693)
-+....|...|++.++-+... ..-.|.+......|.+|...+..+...... .+.+++..+-... .+..+++ .
T Consensus 381 P~~l~~as~~Ydn~lSaD~sn-~~akgl~~ie~~~y~Daa~tl~lv~~~s~n---d~slselswc~~~--~~ek~md--v 452 (1238)
T KOG1127|consen 381 PSILSWASICYDNALSADASN-QRAKGLAPIEANVYTDAAITLDLVSSLSFN---DDSLSELSWCLPR--ALEKMMD--V 452 (1238)
T ss_pred cHHHHHHHHHHHHhhcCChhh-hhhcchhHHHHhhchHHHHHHHHHHHhhcC---chhhhHhhHHHHH--hHHhhhh--H
Confidence 456677888888888555443 555678889999999999998876433211 1111111110000 0000110 1
Q ss_pred hHHHHHHHHHHHHHHHhHhhCChHHHHHHHHHHHHHHHHhhhcCCCChhhhhhHHHHHHHHHhhhHHHHhhcCCchHHHH
Q 005499 116 HAASLVLEAIYLKAKSLQKLGRLTEAANECKSVLDAVERIFQQGIPDAQVDNRLQETVSRAVELLPELWKQVGCDHDALA 195 (693)
Q Consensus 116 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~~A~~ 195 (693)
..+ ...+.++..+-.-+..++...|...|-+.+..+.. +..++..||.+|+---+...|..
T Consensus 453 a~~-~~~e~~~~w~a~~~~rK~~~~al~ali~alrld~~------------------~apaf~~LG~iYrd~~Dm~RA~k 513 (1238)
T KOG1127|consen 453 ALL-LECENSEFWVALGCMRKNSALALHALIRALRLDVS------------------LAPAFAFLGQIYRDSDDMKRAKK 513 (1238)
T ss_pred HHH-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcccc------------------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 111 11222333332222334466777666666554322 23478889999998889999999
Q ss_pred HHHHHhcccCCCChhHHHHHHHHHHHHhhhcccccCCCCCcCCCCCcccCCChhHHHHHHHHHHHHHHhhcCCCCcHHHH
Q 005499 196 AYRRAVLSQWNLDNECCARIQKRFAVFLLHSGVEAGPPSLGSQVEGSYAPKNNLEEAILLLLILMKKYHLGKIKWDPAVM 275 (693)
Q Consensus 196 ~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~ 275 (693)
+|+++.+.++ ....+. .. ....|....+.++|.........+.... .-..-+
T Consensus 514 Cf~KAFeLDa----tdaeaa-aa--------------------~adtyae~~~we~a~~I~l~~~qka~a~---~~k~nW 565 (1238)
T KOG1127|consen 514 CFDKAFELDA----TDAEAA-AA--------------------SADTYAEESTWEEAFEICLRAAQKAPAF---ACKENW 565 (1238)
T ss_pred HHHHHhcCCc----hhhhhH-HH--------------------HHHHhhccccHHHHHHHHHHHhhhchHH---HHHhhh
Confidence 9999998533 211110 00 1124566677788776543332211100 111234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhc
Q 005499 276 EHLTYALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLAAKICSED 355 (693)
Q Consensus 276 ~~l~~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~ 355 (693)
...|..|...++...++..|+.++..+|.+...|..+|.+|...|++..|++.|.++.. ++|.+....+..+.+....
T Consensus 566 ~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s~y~~fk~A~~ecd~ 643 (1238)
T KOG1127|consen 566 VQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLSKYGRFKEAVMECDN 643 (1238)
T ss_pred hhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHhHHHHHHHHHHHHHh
Confidence 45888899999999999999999999999999999999999999999999999999999 6799999999999888888
Q ss_pred CCcHHHHHHHHHHHHHhhcCC--CcchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcC-CCChHHHHH
Q 005499 356 CHLAAEGIQYARTALSNAQGK--DEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFE-NNNADLFFD 432 (693)
Q Consensus 356 ~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 432 (693)
|.+. +|+..+...+...... ...-.+..+..++..+...|-. .......+++++.|.-++... .++...|..
T Consensus 644 GkYk-eald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~----~kavd~~eksie~f~~~l~h~~~~~~~~Wi~ 718 (1238)
T KOG1127|consen 644 GKYK-EALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQ----KKAVDFFEKSIESFIVSLIHSLQSDRLQWIV 718 (1238)
T ss_pred hhHH-HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 9888 9998888877654310 0112245555555555555554 111222344444444333322 222222221
Q ss_pred H----------------------------HhCCH------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH--------c
Q 005499 433 L----------------------------EQRNL------STALRYAKQYIDATGGSVLKGWKLLALVLSA--------Q 470 (693)
Q Consensus 433 l----------------------------~~~~~------~~A~~~~~~al~~~p~~~~~~~~~la~~~~~--------~ 470 (693)
+ ..+.. --+.+++-..+++... + ..|+++|..|.. +
T Consensus 719 asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~-~-~~WyNLGinylr~f~~l~et~ 796 (1238)
T KOG1127|consen 719 ASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIH-M-YPWYNLGINYLRYFLLLGETM 796 (1238)
T ss_pred HhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhc-c-chHHHHhHHHHHHHHHcCCcc
Confidence 1 11111 1234444444444332 3 678888877765 2
Q ss_pred CChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHH
Q 005499 471 QRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVW 550 (693)
Q Consensus 471 g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (693)
.+...|+.++.+++++.. ++...|..+|.+ ...|++.-|..+|-+.+...|.. ...|
T Consensus 797 ~~~~~Ai~c~KkaV~L~a--nn~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~--------------------~~~W 853 (1238)
T KOG1127|consen 797 KDACTAIRCCKKAVSLCA--NNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTC--------------------HCQW 853 (1238)
T ss_pred hhHHHHHHHHHHHHHHhh--ccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccc--------------------hhhe
Confidence 334578889999999888 788888888887 55588888888888888877444 6788
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC-----hhHHHHHHHHH
Q 005499 551 HGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSY-----VPCKVLVGSLF 625 (693)
Q Consensus 551 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~ 625 (693)
.++|.++....+++-|...|.++..++|.+...|...+.+....|+.-++...|.....+.... ...|..-....
T Consensus 854 ~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h 933 (1238)
T KOG1127|consen 854 LNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIH 933 (1238)
T ss_pred eccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHH
Confidence 8999999999999999999999999999988888888888888888888888887744432221 12333333444
Q ss_pred HHhCCCC--------hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 005499 626 SKLGPKA--------LPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASM 679 (693)
Q Consensus 626 ~~~g~~~--------l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 679 (693)
...|+++ +..|--.+++.+...|+...++...|.....++.+.+|.+...+.+.
T Consensus 934 ~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rlig 995 (1238)
T KOG1127|consen 934 LQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIG 995 (1238)
T ss_pred HhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4555544 01233344555566788888888888888888888888887777654
No 56
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.82 E-value=9.7e-20 Score=179.41 Aligned_cols=265 Identities=18% Similarity=0.137 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHH
Q 005499 308 RWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLAAKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRM 387 (693)
Q Consensus 308 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 387 (693)
..+.+|..++..|++++|+.++++.+....+|+++..+..++.++...+++. +|+..+++++...+. . +..+..
T Consensus 10 ~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~-~A~~ay~~l~~~~~~---~--~~~~~~ 83 (280)
T PF13429_consen 10 EALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYD-EAIEAYEKLLASDKA---N--PQDYER 83 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccc---c--cccccc
Confidence 3456688888888888888888665543224666666666666666666666 666666666665442 1 223333
Q ss_pred HHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChHHHHHHHhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 005499 388 LGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNADLFFDLEQRNLSTALRYAKQYIDATGGSVLKGWKLLALVL 467 (693)
Q Consensus 388 lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 467 (693)
++.. ...+++ ++|+..+++ ..+..+ ++ ..+.....++
T Consensus 84 l~~l-~~~~~~-----------~~A~~~~~~-----------------------------~~~~~~-~~-~~l~~~l~~~ 120 (280)
T PF13429_consen 84 LIQL-LQDGDP-----------EEALKLAEK-----------------------------AYERDG-DP-RYLLSALQLY 120 (280)
T ss_dssp -----------------------------------------------------------------------------H-H
T ss_pred cccc-cccccc-----------ccccccccc-----------------------------cccccc-cc-chhhHHHHHH
Confidence 3333 344555 555554444 443332 23 5566667778
Q ss_pred HHcCChHHHHHHHHHHHhhc--CCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhccc
Q 005499 468 SAQQRFSEAEVVTDAALDET--TKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVN 545 (693)
Q Consensus 468 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (693)
...++++++...++++.... + .++.+|..+|.++...|++++|+..|+++++..|++
T Consensus 121 ~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~------------------- 179 (280)
T PF13429_consen 121 YRLGDYDEAEELLEKLEELPAAP--DSARFWLALAEIYEQLGDPDKALRDYRKALELDPDD------------------- 179 (280)
T ss_dssp HHTT-HHHHHHHHHHHHH-T-----T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--------------------
T ss_pred HHHhHHHHHHHHHHHHHhccCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------------------
Confidence 88888888888888876544 4 577888888999999999999999999999888544
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHH
Q 005499 546 EFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLF 625 (693)
Q Consensus 546 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 625 (693)
..++..++.++...|+.+++...+.......|.++..|..+|.++...|++++|+.+|+++++.+|+++..+..+|.++
T Consensus 180 -~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l 258 (280)
T PF13429_consen 180 -PDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADAL 258 (280)
T ss_dssp -HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccc
Confidence 5788888888888899888888888888877888888888899999999999999999999999999999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHh
Q 005499 626 SKLGPKALPVARSLLSDALR 645 (693)
Q Consensus 626 ~~~g~~~l~~A~~~~~~al~ 645 (693)
...|+.+ +|..+++++++
T Consensus 259 ~~~g~~~--~A~~~~~~~~~ 276 (280)
T PF13429_consen 259 EQAGRKD--EALRLRRQALR 276 (280)
T ss_dssp T-------------------
T ss_pred ccccccc--ccccccccccc
Confidence 9999988 89888888765
No 57
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=7.3e-18 Score=154.09 Aligned_cols=240 Identities=18% Similarity=0.106 Sum_probs=158.1
Q ss_pred HhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChHHHHHHHhCCHHHHHHHHHHHHHhcCCCcHHHHH
Q 005499 382 GVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNADLFFDLEQRNLSTALRYAKQYIDATGGSVLKGWK 461 (693)
Q Consensus 382 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~A~~~~~~al~~~p~~~~~~~~ 461 (693)
-+.-..+|.||.+.|.+ .+|...|+.+++..| .+ +.+.
T Consensus 223 wwWk~Q~gkCylrLgm~-----------r~AekqlqssL~q~~------------------------------~~-dTfl 260 (478)
T KOG1129|consen 223 WWWKQQMGKCYLRLGMP-----------RRAEKQLQSSLTQFP------------------------------HP-DTFL 260 (478)
T ss_pred HHHHHHHHHHHHHhcCh-----------hhhHHHHHHHhhcCC------------------------------ch-hHHH
Confidence 44457799999999999 999999998886644 22 5566
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhh
Q 005499 462 LLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIED 541 (693)
Q Consensus 462 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 541 (693)
.++.+|....+...|+..+.+.++..| .++..+...++++..++++++|.++|+.+++..|
T Consensus 261 lLskvY~ridQP~~AL~~~~~gld~fP--~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~----------------- 321 (478)
T KOG1129|consen 261 LLSKVYQRIDQPERALLVIGEGLDSFP--FDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHP----------------- 321 (478)
T ss_pred HHHHHHHHhccHHHHHHHHhhhhhcCC--chhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCC-----------------
Confidence 666666666666666666666666666 5666666666666666666666666666666653
Q ss_pred hcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC--C-ChhHH
Q 005499 542 DKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEP--S-YVPCK 618 (693)
Q Consensus 542 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~-~~~~~ 618 (693)
.+.++.-.+|..|+-.++++-|+.+|++.+.+.-.+++.+.++|.|++..++++-++..|++++.... + -.++|
T Consensus 322 ---~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvW 398 (478)
T KOG1129|consen 322 ---INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVW 398 (478)
T ss_pred ---ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhh
Confidence 33455555666666666666666666666666666666666666666666666666666666665432 1 23566
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCC
Q 005499 619 VLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASMLEESDPIE 687 (693)
Q Consensus 619 ~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 687 (693)
+++|.+....|++. -|.++|+-++..+|++.+++.+||.+-.+.|+.++|..++..|-.+.|.-...
T Consensus 399 YNlg~vaV~iGD~n--lA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~ 465 (478)
T KOG1129|consen 399 YNLGFVAVTIGDFN--LAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEV 465 (478)
T ss_pred hccceeEEeccchH--HHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccc
Confidence 66666666666666 66666666666666666666666666666666666666666666666654433
No 58
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.81 E-value=1.1e-16 Score=164.75 Aligned_cols=257 Identities=11% Similarity=0.056 Sum_probs=192.0
Q ss_pred HHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChHHH------HHHHhCCHHHHHHHHHHHHHhcCCCcHHHHHH
Q 005499 389 GLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNADLF------FDLEQRNLSTALRYAKQYIDATGGSVLKGWKL 462 (693)
Q Consensus 389 g~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~------~~l~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 462 (693)
+......|++ +.|..+|.++.+.+|++.... ..+..|++++|+..++++.+..|+++ .++..
T Consensus 125 A~aA~~~g~~-----------~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~-~al~l 192 (398)
T PRK10747 125 AEAAQQRGDE-----------ARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHP-EVLRL 192 (398)
T ss_pred HHHHHHCCCH-----------HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH-HHHHH
Confidence 4444566666 666666666666666553221 11167777777777778888888888 99999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHH-HHHHHH---HHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccc
Q 005499 463 LALVLSAQQRFSEAEVVTDAALDETTKWEQGPILR-LKAKLK---IAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQ 538 (693)
Q Consensus 463 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~-~l~~~~---~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 538 (693)
++.+|...|++++|+.++.+..+..+ .+..... .....+ ..........+.+.+..+..|...
T Consensus 193 l~~~~~~~gdw~~a~~~l~~l~k~~~--~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~----------- 259 (398)
T PRK10747 193 AEQAYIRTGAWSSLLDILPSMAKAHV--GDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKT----------- 259 (398)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHH-----------
Confidence 99999999999999999999887765 3322211 111111 111111122333344433333222
Q ss_pred hhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHH
Q 005499 539 IEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCK 618 (693)
Q Consensus 539 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 618 (693)
+.++.++..++..+...|+.++|...++++++ .|.++......+.+ ..++.+++++..++.++.+|+++..+
T Consensus 260 -----~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~ 331 (398)
T PRK10747 260 -----RHQVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLW 331 (398)
T ss_pred -----hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHH
Confidence 55578999999999999999999999999999 45566655555554 45999999999999999999999999
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Q 005499 619 VLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASMLE 681 (693)
Q Consensus 619 ~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 681 (693)
..+|.++...++++ +|++.|+++++..|++. .+..++.++..+|+.++|.++|++++.+.
T Consensus 332 l~lgrl~~~~~~~~--~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 332 STLGQLLMKHGEWQ--EASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHCCCHH--HHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 99999999999999 99999999999999864 46689999999999999999999999864
No 59
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.80 E-value=2.1e-17 Score=144.66 Aligned_cols=205 Identities=19% Similarity=0.093 Sum_probs=179.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCccccc
Q 005499 458 KGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLS 537 (693)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 537 (693)
.+...+|.-|...|++..|...++++++.+| +...+|..++.+|...|+.+.|.+.|++++++.|++
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DP--s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~----------- 102 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDP--SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN----------- 102 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc-----------
Confidence 5678889999999999999999999999999 888999999999999999999999999999988444
Q ss_pred chhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCCh
Q 005499 538 QIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKAREL--KAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYV 615 (693)
Q Consensus 538 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 615 (693)
..++++.|..++.+|++++|...|++++.. .|..+.++.++|.|..+.|+++.|..+|++++..+|+.+
T Consensus 103 ---------GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~ 173 (250)
T COG3063 103 ---------GDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP 173 (250)
T ss_pred ---------cchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC
Confidence 688999999999999999999999999864 456677899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCC
Q 005499 616 PCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASMLEESDPI 686 (693)
Q Consensus 616 ~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 686 (693)
.....++..+++.|++. .|..++++.....+-..+.+.....+-...|+-+.|-.+=.+...+.|.++.
T Consensus 174 ~~~l~~a~~~~~~~~y~--~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 174 PALLELARLHYKAGDYA--PARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred hHHHHHHHHHHhcccch--HHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 99999999999999999 9999999988887877888888888888899988888877777777787654
No 60
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.80 E-value=1.9e-17 Score=159.38 Aligned_cols=201 Identities=17% Similarity=0.089 Sum_probs=183.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCccccc
Q 005499 458 KGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLS 537 (693)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 537 (693)
..+..+|.++...|++++|+..+++++...| .+..++..+|.++...|++++|+..++++++..|..
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----------- 98 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDP--DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN----------- 98 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----------
Confidence 7789999999999999999999999999999 788999999999999999999999999999987433
Q ss_pred chhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCCh
Q 005499 538 QIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELK--AYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYV 615 (693)
Q Consensus 538 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 615 (693)
..++..+|.++...|++++|+..+++++... +.....+..+|.++...|++++|...+++++..+|+++
T Consensus 99 ---------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 169 (234)
T TIGR02521 99 ---------GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRP 169 (234)
T ss_pred ---------HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCh
Confidence 5788999999999999999999999998753 45677889999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhccc
Q 005499 616 PCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASMLEE 682 (693)
Q Consensus 616 ~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 682 (693)
.++..+|.++...|+++ +|...++++++..|.++..+..++.++...|+.++|..+.+.+....|
T Consensus 170 ~~~~~la~~~~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 170 ESLLELAELYYLRGQYK--DARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 99999999999999998 999999999999898999999999999999999999999888766543
No 61
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.80 E-value=5.1e-19 Score=174.53 Aligned_cols=232 Identities=14% Similarity=0.134 Sum_probs=177.7
Q ss_pred HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHH
Q 005499 434 EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAI 513 (693)
Q Consensus 434 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 513 (693)
+.|++.+|.-.|+.+++.+|.+. ++|..||.+....++-..|+..++++++++| ++..++..|+..|...|.-.+|+
T Consensus 297 ~nG~L~~A~LafEAAVkqdP~ha-eAW~~LG~~qaENE~E~~ai~AL~rcl~LdP--~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQDPQHA-EAWQKLGITQAENENEQNAISALRRCLELDP--TNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred hcCCchHHHHHHHHHHhhChHHH-HHHHHhhhHhhhccchHHHHHHHHHHHhcCC--ccHHHHHHHHHHHhhhhhHHHHH
Confidence 77888888888888888889888 9999999999999999999999999999999 89999999999999999989999
Q ss_pred HHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC--CCHHHHHHHHHHH
Q 005499 514 ETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKA--YSAEMLHTEGVMH 591 (693)
Q Consensus 514 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~ 591 (693)
.++.+-+...|.......... ...+. ...-......+..-.+.|-.+....| .++++...||.+|
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~------~~~~~-------~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy 440 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGE------NEDFE-------NTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLY 440 (579)
T ss_pred HHHHHHHHhCccchhccccCc------ccccc-------CCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHH
Confidence 998888877644321100000 00000 00000111112334455555666666 6788888888888
Q ss_pred HHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHH
Q 005499 592 EGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAA 671 (693)
Q Consensus 592 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 671 (693)
...|+|++|+.+|+.||...|++...|+.||.++..-.+.+ +|+..|++|+++.|....++++||..++.+|.|++|.
T Consensus 441 ~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~--EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~ 518 (579)
T KOG1125|consen 441 NLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSE--EAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAV 518 (579)
T ss_pred hcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccH--HHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHH
Confidence 88888888888888888888888888888888888888888 8888888888888888888888888888888888888
Q ss_pred HHHHHHHhcccC
Q 005499 672 DCFQAASMLEES 683 (693)
Q Consensus 672 ~~~~~al~l~p~ 683 (693)
.+|-.||.+.+.
T Consensus 519 ~hlL~AL~mq~k 530 (579)
T KOG1125|consen 519 KHLLEALSMQRK 530 (579)
T ss_pred HHHHHHHHhhhc
Confidence 888888887665
No 62
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.79 E-value=1.9e-16 Score=164.07 Aligned_cols=296 Identities=14% Similarity=-0.020 Sum_probs=181.4
Q ss_pred HHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHH
Q 005499 310 NALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLAAKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLG 389 (693)
Q Consensus 310 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg 389 (693)
...|...+..|+++.|.+.+.++.+ ..|+....+++.|.+....+++. .|..++.++.+..|... ..+....+
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~--~~~~~~~~~llaA~aa~~~g~~~-~A~~~l~~a~~~~p~~~----l~~~~~~a 160 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNAD--HAAEPVLNLIKAAEAAQQRGDEA-RANQHLEEAAELAGNDN----ILVEIART 160 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHhCCcCc----hHHHHHHH
Confidence 3445555566666666666666555 23555555555566555555555 66666666655444211 12233345
Q ss_pred HHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChHHHHHH-----HhCCHHHHHHHHHHHHHhcCCCcHHHHH---
Q 005499 390 LCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNADLFFDL-----EQRNLSTALRYAKQYIDATGGSVLKGWK--- 461 (693)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-----~~~~~~~A~~~~~~al~~~p~~~~~~~~--- 461 (693)
.++...|++ ++|+..+++.++..|+++.++..+ ..|++++|...+.+..+..+.++ ....
T Consensus 161 ~l~l~~~~~-----------~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~-~~~~~l~ 228 (409)
T TIGR00540 161 RILLAQNEL-----------HAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD-EEFADLE 228 (409)
T ss_pred HHHHHCCCH-----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH-HHHHHHH
Confidence 555666666 666666666666666666554444 66666666666666665543332 2111
Q ss_pred -HHHHHHHHcCChHHHHHHHHHHHhhcCCC--CchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccc
Q 005499 462 -LLALVLSAQQRFSEAEVVTDAALDETTKW--EQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQ 538 (693)
Q Consensus 462 -~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 538 (693)
....-+...+..+++.+.+.++....|.. +++.++..++..+...|++++|.+.++++++..|++.
T Consensus 229 ~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~----------- 297 (409)
T TIGR00540 229 QKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDR----------- 297 (409)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcc-----------
Confidence 11111123333444455566655555410 2667777777777777777777777777777765442
Q ss_pred hhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHCCChHHHHHHHH--HHHhhCCCC
Q 005499 539 IEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSA--EMLHTEGVMHEGCGQTHEALRAYI--NALLIEPSY 614 (693)
Q Consensus 539 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~--~al~~~p~~ 614 (693)
.. .............++.+.++..++++++..|+++ ..+..+|+++.+.|++++|.++|+ .+++..|+.
T Consensus 298 -----~~--~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~ 370 (409)
T TIGR00540 298 -----AI--SLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA 370 (409)
T ss_pred -----cc--hhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH
Confidence 00 0012222333445777888888888888888888 778888888888888888888888 577777776
Q ss_pred hhHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q 005499 615 VPCKVLVGSLFSKLGPKALPVARSLLSDALR 645 (693)
Q Consensus 615 ~~~~~~la~~~~~~g~~~l~~A~~~~~~al~ 645 (693)
.. +..+|.++.++|+.+ +|.+++++++.
T Consensus 371 ~~-~~~La~ll~~~g~~~--~A~~~~~~~l~ 398 (409)
T TIGR00540 371 ND-LAMAADAFDQAGDKA--EAAAMRQDSLG 398 (409)
T ss_pred HH-HHHHHHHHHHcCCHH--HHHHHHHHHHH
Confidence 55 448888888888888 88888888765
No 63
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.79 E-value=1e-15 Score=152.95 Aligned_cols=406 Identities=14% Similarity=0.045 Sum_probs=300.5
Q ss_pred ChhHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHCCCcHHHH
Q 005499 247 NNLEEAILLLLILMKKYHLGKIKWDPAVMEHLTYALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDAAL 326 (693)
Q Consensus 247 ~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~ 326 (693)
++|...+.+. +.++++.|...+.....|..+...|+-++|.+....++..++.+...|..+|..+....+|++|+
T Consensus 21 kQYkkgLK~~-----~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eai 95 (700)
T KOG1156|consen 21 KQYKKGLKLI-----KQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAI 95 (700)
T ss_pred HHHHhHHHHH-----HHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHH
Confidence 5566666554 56777889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCChHHHh
Q 005499 327 NLLRKSLHKHERPNDLMALLLAAKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERS 406 (693)
Q Consensus 327 ~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~ 406 (693)
++|+.++. .+|+|...+.-++.+..+.+++. -....-.+.++..| .. -..|...+.++...|++
T Consensus 96 Kcy~nAl~--~~~dN~qilrDlslLQ~QmRd~~-~~~~tr~~LLql~~---~~--ra~w~~~Avs~~L~g~y-------- 159 (700)
T KOG1156|consen 96 KCYRNALK--IEKDNLQILRDLSLLQIQMRDYE-GYLETRNQLLQLRP---SQ--RASWIGFAVAQHLLGEY-------- 159 (700)
T ss_pred HHHHHHHh--cCCCcHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHhhh---hh--HHHHHHHHHHHHHHHHH--------
Confidence 99999999 56999999999998888888887 66666667777777 44 66688889999999999
Q ss_pred HHHHHHHHHHHHHHhcC---CCChHHHHH-----H-----HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCh
Q 005499 407 RLQSEALKSLDGASTFE---NNNADLFFD-----L-----EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRF 473 (693)
Q Consensus 407 ~~~~~A~~~~~~al~~~---p~~~~~~~~-----l-----~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~ 473 (693)
..|...++...+.. |.....-.. . ..|.+++|++.+..--..--+.. ......+.++..++++
T Consensus 160 ---~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkl-a~~e~ka~l~~kl~~l 235 (700)
T KOG1156|consen 160 ---KMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKL-AFEETKADLLMKLGQL 235 (700)
T ss_pred ---HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHH-HHhhhHHHHHHHHhhH
Confidence 88888777666433 322111111 1 67778888877766543333333 4566788999999999
Q ss_pred HHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHH-HHHHHHHHHHHhhhh------------------------
Q 005499 474 SEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAI-ETYRYLLALVQAQRK------------------------ 528 (693)
Q Consensus 474 ~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~l~~~~~~~~------------------------ 528 (693)
++|...+...+..+| ++...+..+-.++..-.+--+++ ..|...-+..|....
T Consensus 236 EeA~~~y~~Ll~rnP--dn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~ 313 (700)
T KOG1156|consen 236 EEAVKVYRRLLERNP--DNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRP 313 (700)
T ss_pred HhHHHHHHHHHhhCc--hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHH
Confidence 999999999999999 77776666655554222222333 333333322222111
Q ss_pred --------hcCCcccccc-----------------------------hhhhcccHH--HHHHHHHHHHHhCCChHHHHHH
Q 005499 529 --------SFGPLRCLSQ-----------------------------IEDDKVNEF--QVWHGLANLYSGLSHWKDVAIC 569 (693)
Q Consensus 529 --------~~~~~~~~~~-----------------------------~~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~ 569 (693)
.+....++++ .....|... .+++.++.-+-..|+++.|..+
T Consensus 314 ~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~y 393 (700)
T KOG1156|consen 314 LLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEY 393 (700)
T ss_pred HhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 0111111110 111113333 3446678889999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCC
Q 005499 570 MGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPT 649 (693)
Q Consensus 570 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~ 649 (693)
++.|+...|.-++.+...|+++...|+.++|..++.++.++|-.+...-..-|.-..+.++.+ +|.+.+.+--+..-+
T Consensus 394 Id~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~--eA~~~~skFTr~~~~ 471 (700)
T KOG1156|consen 394 IDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIE--EAEEVLSKFTREGFG 471 (700)
T ss_pred HHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccH--HHHHHHHHhhhcccc
Confidence 999999999999999999999999999999999999999998776655556788888888888 999888776553321
Q ss_pred -------CHHHHHH--HHHHHHHcCChHHHHHHHHHHHhcc
Q 005499 650 -------NRKAWYY--LGLVHKDDGRIADAADCFQAASMLE 681 (693)
Q Consensus 650 -------~~~~~~~--lg~~~~~~g~~~~A~~~~~~al~l~ 681 (693)
-.-.|+. -|..|.++|++..|+.-|..+-...
T Consensus 472 ~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~ 512 (700)
T KOG1156|consen 472 AVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHY 512 (700)
T ss_pred hhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHH
Confidence 1124554 4889999999999988777665543
No 64
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=7.7e-18 Score=166.30 Aligned_cols=251 Identities=19% Similarity=0.213 Sum_probs=208.4
Q ss_pred HHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChHHHHHH-----HhCCHHHHHHHHHHHHHhcCCCcHHHH
Q 005499 386 RMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNADLFFDL-----EQRNLSTALRYAKQYIDATGGSVLKGW 460 (693)
Q Consensus 386 ~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-----~~~~~~~A~~~~~~al~~~p~~~~~~~ 460 (693)
+..|..+.+.|.. .+|.-+|+.+++.+|.+.++|..| ..++-..|+..++++++++|++. .++
T Consensus 289 f~eG~~lm~nG~L-----------~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nl-eaL 356 (579)
T KOG1125|consen 289 FKEGCNLMKNGDL-----------SEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNL-EAL 356 (579)
T ss_pred HHHHHHHHhcCCc-----------hHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccH-HHH
Confidence 5678889999999 999999999999999999999999 67788899999999999999999 999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHH---------HhCChhHHHHHHHHHHHHHHhhhhhcC
Q 005499 461 KLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKI---------AQALPMDAIETYRYLLALVQAQRKSFG 531 (693)
Q Consensus 461 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~l~~~~~~~~~~~ 531 (693)
..||..|...|.-.+|+.++.+-+...|++ ... ..+..-. ....+..-.+.|-.+....|.
T Consensus 357 maLAVSytNeg~q~~Al~~L~~Wi~~~p~y--~~l--~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~------ 426 (579)
T KOG1125|consen 357 MALAVSYTNEGLQNQALKMLDKWIRNKPKY--VHL--VSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPT------ 426 (579)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCccc--hhc--cccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCC------
Confidence 999999999999999999999999888732 111 0000000 000111222333333333321
Q ss_pred CcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 005499 532 PLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIE 611 (693)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 611 (693)
..++++...||.+|.-.|+|++|+.||+.|+...|++...|..||..+....+.++|+..|++|+++.
T Consensus 427 ------------~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq 494 (579)
T KOG1125|consen 427 ------------KIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ 494 (579)
T ss_pred ------------CCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC
Confidence 14578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCC----------CHHHHHHHHHHHHHcCChHHHHH
Q 005499 612 PSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPT----------NRKAWYYLGLVHKDDGRIADAAD 672 (693)
Q Consensus 612 p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~----------~~~~~~~lg~~~~~~g~~~~A~~ 672 (693)
|.++.++++||..+..+|.|. +|.++|-.+|.+.+. +..+|..|-.++...++.+-+..
T Consensus 495 P~yVR~RyNlgIS~mNlG~yk--EA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 495 PGYVRVRYNLGISCMNLGAYK--EAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred CCeeeeehhhhhhhhhhhhHH--HHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 999999999999999999999 999999999987654 13588888888888888775443
No 65
>PLN02789 farnesyltranstransferase
Probab=99.78 E-value=1.3e-16 Score=156.13 Aligned_cols=218 Identities=16% Similarity=0.161 Sum_probs=195.7
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhcC
Q 005499 410 SEALKSLDGASTFENNNADLFFDLEQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQ-RFSEAEVVTDAALDETT 488 (693)
Q Consensus 410 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 488 (693)
.+|..+|+.++.. .+..++|+..+.++++++|.+. .+|..++.++...| ++++++..+++++..+|
T Consensus 37 ~~a~~~~ra~l~~------------~e~serAL~lt~~aI~lnP~~y-taW~~R~~iL~~L~~~l~eeL~~~~~~i~~np 103 (320)
T PLN02789 37 REAMDYFRAVYAS------------DERSPRALDLTADVIRLNPGNY-TVWHFRRLCLEALDADLEEELDFAEDVAEDNP 103 (320)
T ss_pred HHHHHHHHHHHHc------------CCCCHHHHHHHHHHHHHCchhH-HHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC
Confidence 7888888888765 3467899999999999999999 99999999999998 68999999999999999
Q ss_pred CCCchHHHHHHHHHHHHhCCh--hHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHH
Q 005499 489 KWEQGPILRLKAKLKIAQALP--MDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDV 566 (693)
Q Consensus 489 ~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 566 (693)
.+..+|..++.++...|+. ++++.+++++++.+|.+ ..+|...+.++...|+++++
T Consensus 104 --knyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkN--------------------y~AW~~R~w~l~~l~~~~ee 161 (320)
T PLN02789 104 --KNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKN--------------------YHAWSHRQWVLRTLGGWEDE 161 (320)
T ss_pred --cchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCccc--------------------HHHHHHHHHHHHHhhhHHHH
Confidence 8999999999999999874 78899999999998544 79999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHC---CCh----HHHHHHHHHHHhhCCCChhHHHHHHHHHHH----hCCCChHH
Q 005499 567 AICMGKARELKAYSAEMLHTEGVMHEGC---GQT----HEALRAYINALLIEPSYVPCKVLVGSLFSK----LGPKALPV 635 (693)
Q Consensus 567 ~~~~~~al~~~p~~~~~~~~lg~~~~~~---g~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~l~~ 635 (693)
+.++.++++.+|.+..+|+.++.+.... |.+ ++++.+..+++..+|++..+|+.++.++.. +++.. +
T Consensus 162 L~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~--~ 239 (320)
T PLN02789 162 LEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDP--E 239 (320)
T ss_pred HHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccch--h
Confidence 9999999999999999999999998776 333 578888899999999999999999999988 45556 8
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 005499 636 ARSLLSDALRIEPTNRKAWYYLGLVHKDD 664 (693)
Q Consensus 636 A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 664 (693)
|.+.+.+++...|.++.++..|+.+|...
T Consensus 240 ~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 240 VSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 99999999999999999999999999864
No 66
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.77 E-value=1.2e-16 Score=140.01 Aligned_cols=209 Identities=16% Similarity=0.075 Sum_probs=179.1
Q ss_pred HhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChHHHHHHHhCCHHHHHHHHHHHHHhcCCCcHHHHH
Q 005499 382 GVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNADLFFDLEQRNLSTALRYAKQYIDATGGSVLKGWK 461 (693)
Q Consensus 382 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~A~~~~~~al~~~p~~~~~~~~ 461 (693)
..+...||..|...|++ ..|...++++++. +|++. .+|.
T Consensus 35 a~arlqLal~YL~~gd~-----------~~A~~nlekAL~~-----------------------------DPs~~-~a~~ 73 (250)
T COG3063 35 AKARLQLALGYLQQGDY-----------AQAKKNLEKALEH-----------------------------DPSYY-LAHL 73 (250)
T ss_pred HHHHHHHHHHHHHCCCH-----------HHHHHHHHHHHHh-----------------------------CcccH-HHHH
Confidence 55566666666666666 6666666655554 55666 9999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhh
Q 005499 462 LLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIED 541 (693)
Q Consensus 462 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 541 (693)
.+|.+|...|+.+.|.+.|++++.+.| ++.+++.+.|..++.+|++++|...|++++.. |.-
T Consensus 74 ~~A~~Yq~~Ge~~~A~e~YrkAlsl~p--~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~-P~Y--------------- 135 (250)
T COG3063 74 VRAHYYQKLGENDLADESYRKALSLAP--NNGDVLNNYGAFLCAQGRPEEAMQQFERALAD-PAY--------------- 135 (250)
T ss_pred HHHHHHHHcCChhhHHHHHHHHHhcCC--CccchhhhhhHHHHhCCChHHHHHHHHHHHhC-CCC---------------
Confidence 999999999999999999999999999 89999999999999999999999999999975 322
Q ss_pred hcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHH
Q 005499 542 DKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLV 621 (693)
Q Consensus 542 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 621 (693)
+....+|.++|.|..+.|+++.|..+|++++.++|+.+.....++..++..|++-.|..++++.....+-..+.+...
T Consensus 136 --~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~ 213 (250)
T COG3063 136 --GEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLG 213 (250)
T ss_pred --CCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHH
Confidence 455789999999999999999999999999999999999999999999999999999999999988877777777777
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHhhCCCCHHH
Q 005499 622 GSLFSKLGPKALPVARSLLSDALRIEPTNRKA 653 (693)
Q Consensus 622 a~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~ 653 (693)
..+-...|+.+ .+.++=.+.-+..|..++.
T Consensus 214 iriak~~gd~~--~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 214 IRIAKRLGDRA--AAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHHHHHhccHH--HHHHHHHHHHHhCCCcHHH
Confidence 78888899988 8888777777788987654
No 67
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=7.5e-18 Score=154.02 Aligned_cols=241 Identities=17% Similarity=0.080 Sum_probs=132.8
Q ss_pred HHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHH
Q 005499 310 NALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLAAKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLG 389 (693)
Q Consensus 310 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg 389 (693)
.++|.||++.|-+.+|.+.|+..++.. ..+..+++++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~---~~~dTfllLs---------------------------------------- 263 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF---PHPDTFLLLS---------------------------------------- 263 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC---CchhHHHHHH----------------------------------------
Confidence 357889999998888888888888742 3344444444
Q ss_pred HHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChHHHHHHHhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 005499 390 LCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNADLFFDLEQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSA 469 (693)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~ 469 (693)
.+|.+..++ ..|+..|.+.+... |.+. ..+..+++++..
T Consensus 264 kvY~ridQP-----------~~AL~~~~~gld~f-----------------------------P~~V-T~l~g~ARi~ea 302 (478)
T KOG1129|consen 264 KVYQRIDQP-----------ERALLVIGEGLDSF-----------------------------PFDV-TYLLGQARIHEA 302 (478)
T ss_pred HHHHHhccH-----------HHHHHHHhhhhhcC-----------------------------Cchh-hhhhhhHHHHHH
Confidence 444444444 44554444444333 3333 444445555555
Q ss_pred cCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHH
Q 005499 470 QQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQV 549 (693)
Q Consensus 470 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (693)
++++++|.++|+.+++.+| .+.++.-.++.-|...++++-|+.+|+++++.. ..+++.
T Consensus 303 m~~~~~a~~lYk~vlk~~~--~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG--------------------~~speL 360 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHP--INVEAIACIAVGYFYDNNPEMALRYYRRILQMG--------------------AQSPEL 360 (478)
T ss_pred HHhHHHHHHHHHHHHhcCC--ccceeeeeeeeccccCCChHHHHHHHHHHHHhc--------------------CCChHH
Confidence 5555555555555555555 455555555555555555555555555555554 222455
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhhCC--C-CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q 005499 550 WHGLANLYSGLSHWKDVAICMGKARELKA--Y-SAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFS 626 (693)
Q Consensus 550 ~~~la~~~~~~~~~~~A~~~~~~al~~~p--~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 626 (693)
+.++|.+++..++++-++..|++++.... + -+++|+++|.+....|++.-|..+|+-++..+|++.+++++||.+-.
T Consensus 361 f~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~ 440 (478)
T KOG1129|consen 361 FCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAA 440 (478)
T ss_pred HhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHh
Confidence 55555555555555555555555554321 1 23455555555555555555555555555555555555555555555
Q ss_pred HhCCCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 005499 627 KLGPKALPVARSLLSDALRIEPTNRKAWYYLG 658 (693)
Q Consensus 627 ~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg 658 (693)
+.|+.+ +|..++..+-...|+-.+..++++
T Consensus 441 r~G~i~--~Arsll~~A~s~~P~m~E~~~Nl~ 470 (478)
T KOG1129|consen 441 RSGDIL--GARSLLNAAKSVMPDMAEVTTNLQ 470 (478)
T ss_pred hcCchH--HHHHHHHHhhhhCcccccccccee
Confidence 555555 555555555555555544444444
No 68
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.76 E-value=1.7e-15 Score=155.97 Aligned_cols=209 Identities=14% Similarity=0.017 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHH-----HhCCHHHHHHHHHHHHHhcCCCcHH-------HHHHHHHHHHHcCChHHHH
Q 005499 410 SEALKSLDGASTFENNNADLFFDL-----EQRNLSTALRYAKQYIDATGGSVLK-------GWKLLALVLSAQQRFSEAE 477 (693)
Q Consensus 410 ~~A~~~~~~al~~~p~~~~~~~~l-----~~~~~~~A~~~~~~al~~~p~~~~~-------~~~~la~~~~~~g~~~~A~ 477 (693)
++|+..+++..+.+|+++.++..+ ..|++++|+..+.++.+..+.++.. ++..+........+-+...
T Consensus 170 ~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~ 249 (398)
T PRK10747 170 HAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLK 249 (398)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 444444444444444444443333 4444444444444444433332200 1111111122223344444
Q ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHH
Q 005499 478 VVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLY 557 (693)
Q Consensus 478 ~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 557 (693)
+.++..-...| +++.+...++..+...|+.++|...++++++.. .+.......+.
T Consensus 250 ~~w~~lp~~~~--~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~---------------------~~~~l~~l~~~-- 304 (398)
T PRK10747 250 RWWKNQSRKTR--HQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ---------------------YDERLVLLIPR-- 304 (398)
T ss_pred HHHHhCCHHHh--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---------------------CCHHHHHHHhh--
Confidence 55555444556 677788888888888888888888888887742 11233323333
Q ss_pred HhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHH
Q 005499 558 SGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVAR 637 (693)
Q Consensus 558 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~ 637 (693)
...+++++++..+++.++.+|+++..+..+|.++...|++++|...|+++++..|++. .+..++.++.++|+.+ +|.
T Consensus 305 l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~--~A~ 381 (398)
T PRK10747 305 LKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPE--EAA 381 (398)
T ss_pred ccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHH--HHH
Confidence 2447888888888888888888888888888888888888888888888888888754 4557888888888887 888
Q ss_pred HHHHHHHhh
Q 005499 638 SLLSDALRI 646 (693)
Q Consensus 638 ~~~~~al~~ 646 (693)
.+|++++.+
T Consensus 382 ~~~~~~l~~ 390 (398)
T PRK10747 382 AMRRDGLML 390 (398)
T ss_pred HHHHHHHhh
Confidence 888888764
No 69
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=2.5e-13 Score=130.77 Aligned_cols=380 Identities=10% Similarity=0.037 Sum_probs=301.4
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHH
Q 005499 268 IKWDPAVMEHLTYALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLL 347 (693)
Q Consensus 268 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~ 347 (693)
.|....+++.-..+--..|+...|.+.|++-+.-.| +..+|......-++-++.+.|..+|++.+-. .|+ +..++.
T Consensus 137 lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P-~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~-v~~wik 212 (677)
T KOG1915|consen 137 LPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEP-DEQAWLSFIKFELRYKEIERARSIYERFVLV--HPK-VSNWIK 212 (677)
T ss_pred cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--ccc-HHHHHH
Confidence 366667777777777788999999999999998876 4578999999999999999999999999884 354 566777
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCC-
Q 005499 348 AAKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNN- 426 (693)
Q Consensus 348 ~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~- 426 (693)
.++.-..+|... -+...+.++++........ ...+...+..-..+..+ +.|.-.|+-|+..-|.+
T Consensus 213 yarFE~k~g~~~-~aR~VyerAie~~~~d~~~--e~lfvaFA~fEe~qkE~-----------ERar~iykyAld~~pk~r 278 (677)
T KOG1915|consen 213 YARFEEKHGNVA-LARSVYERAIEFLGDDEEA--EILFVAFAEFEERQKEY-----------ERARFIYKYALDHIPKGR 278 (677)
T ss_pred HHHHHHhcCcHH-HHHHHHHHHHHHhhhHHHH--HHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhcCccc
Confidence 788888888777 9999999999977643322 45555666666677778 99999999999888877
Q ss_pred -hHHHHHH-----HhCC---HHHHH-----HHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCc
Q 005499 427 -ADLFFDL-----EQRN---LSTAL-----RYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQ 492 (693)
Q Consensus 427 -~~~~~~l-----~~~~---~~~A~-----~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 492 (693)
...+..+ +-|+ .+.++ -.|+..+..+|.+. ++|...-.+....|+.+.-.+.|++++...|+...
T Consensus 279 aeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nY-DsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~e 357 (677)
T KOG1915|consen 279 AEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNY-DSWFDYLRLEESVGDKDRIRETYERAIANVPPASE 357 (677)
T ss_pred HHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCc-hHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhH
Confidence 3333333 3343 33333 34777888999999 99999999999999999999999999998883211
Q ss_pred hHHH-------HHHH-HHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChH
Q 005499 493 GPIL-------RLKA-KLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWK 564 (693)
Q Consensus 493 ~~~~-------~~l~-~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 564 (693)
...| .+.+ ..-....+.+.+.++|+.++++-|... ...+.+|...|....++.+..
T Consensus 358 kr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkk----------------FtFaKiWlmyA~feIRq~~l~ 421 (677)
T KOG1915|consen 358 KRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKK----------------FTFAKIWLMYAQFEIRQLNLT 421 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCccc----------------chHHHHHHHHHHHHHHHcccH
Confidence 1122 2221 122345789999999999999987654 455889999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 005499 565 DVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDAL 644 (693)
Q Consensus 565 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al 644 (693)
.|...+-.++...|.+- .+-....+-...++++.+..+|++.+...|.+..+|...|.+-..+|+.+ .|...|+-++
T Consensus 422 ~ARkiLG~AIG~cPK~K-lFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lgdtd--RaRaifelAi 498 (677)
T KOG1915|consen 422 GARKILGNAIGKCPKDK-LFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTD--RARAIFELAI 498 (677)
T ss_pred HHHHHHHHHhccCCchh-HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHH--HHHHHHHHHh
Confidence 99999999999999753 44445566778899999999999999999999999999999999999999 9999999998
Q ss_pred hhCCCC-H-HHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCC
Q 005499 645 RIEPTN-R-KAWYYLGLVHKDDGRIADAADCFQAASMLEESDP 685 (693)
Q Consensus 645 ~~~p~~-~-~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 685 (693)
....-+ | -.|-.....-...|.++.|...|++.|+..+-.+
T Consensus 499 ~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 499 SQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK 541 (677)
T ss_pred cCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch
Confidence 754322 3 3455666777789999999999999999877655
No 70
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.76 E-value=2.1e-16 Score=155.72 Aligned_cols=227 Identities=12% Similarity=-0.003 Sum_probs=180.3
Q ss_pred HHHHHHHHHHHhcCC---CC-hHHHHHH-----HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q 005499 410 SEALKSLDGASTFEN---NN-ADLFFDL-----EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVT 480 (693)
Q Consensus 410 ~~A~~~~~~al~~~p---~~-~~~~~~l-----~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~ 480 (693)
+.++..+.+++...| .. +..++.+ ..|++++|+..|+++++++|+++ .+|..+|.++...|++++|+..|
T Consensus 43 e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~-~a~~~lg~~~~~~g~~~~A~~~~ 121 (296)
T PRK11189 43 EVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMA-DAYNYLGIYLTQAGNFDAAYEAF 121 (296)
T ss_pred HHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHCCCHHHHHHHH
Confidence 888999999996433 32 4456555 78999999999999999999999 99999999999999999999999
Q ss_pred HHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhC
Q 005499 481 DAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGL 560 (693)
Q Consensus 481 ~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 560 (693)
+++++++| ++..++..+|.++...|++++|++.|+++++.+|.++ . ...|. .+....
T Consensus 122 ~~Al~l~P--~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~-----------------~-~~~~~---~l~~~~ 178 (296)
T PRK11189 122 DSVLELDP--TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP-----------------Y-RALWL---YLAESK 178 (296)
T ss_pred HHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----------------H-HHHHH---HHHHcc
Confidence 99999999 8999999999999999999999999999999986652 0 12222 234467
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHH-------hhCCCChhHHHHHHHHHHHhCCCCh
Q 005499 561 SHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINAL-------LIEPSYVPCKVLVGSLFSKLGPKAL 633 (693)
Q Consensus 561 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-------~~~p~~~~~~~~la~~~~~~g~~~l 633 (693)
+++++|+..+.++....+.. .|. .+.+....|+..++ ..++.+. ++.|....+|+++|.++...|+++
T Consensus 179 ~~~~~A~~~l~~~~~~~~~~--~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~- 253 (296)
T PRK11189 179 LDPKQAKENLKQRYEKLDKE--QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLD- 253 (296)
T ss_pred CCHHHHHHHHHHHHhhCCcc--ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHH-
Confidence 88999999998876543322 222 35666667776544 2333333 556777889999999999999999
Q ss_pred HHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCC
Q 005499 634 PVARSLLSDALRIEP-TNRKAWYYLGLVHKDDGR 666 (693)
Q Consensus 634 ~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~ 666 (693)
+|+.+|+++++.+| +..+..+.+..+....++
T Consensus 254 -~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 254 -EAAALFKLALANNVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred -HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhh
Confidence 99999999999997 666666666666555444
No 71
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=3.2e-13 Score=130.13 Aligned_cols=377 Identities=12% Similarity=0.069 Sum_probs=274.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHH--H
Q 005499 271 DPAVMEHLTYALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLL--A 348 (693)
Q Consensus 271 ~~~~~~~l~~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~--~ 348 (693)
+..++......-.+..+.+.|...|++.+-.+ ++...|...+..-.+.|+...|..+|..++....+ +.....+. .
T Consensus 173 ~eqaW~sfI~fElRykeieraR~IYerfV~~H-P~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~-d~~~e~lfvaF 250 (677)
T KOG1915|consen 173 DEQAWLSFIKFELRYKEIERARSIYERFVLVH-PKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD-DEEAEILFVAF 250 (677)
T ss_pred cHHHHHHHHHHHHHhhHHHHHHHHHHHHheec-ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh-HHHHHHHHHHH
Confidence 44556666666677888889999999887666 56778999999999999999999999999986422 22222222 2
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChH
Q 005499 349 AKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNAD 428 (693)
Q Consensus 349 a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 428 (693)
|..-..+..+. .|.-.++-+++..|++.....-..+.. .--+-|+...+ .+....+-.-.|++.+..+|.|.+
T Consensus 251 A~fEe~qkE~E-Rar~iykyAld~~pk~raeeL~k~~~~---fEKqfGd~~gI---Ed~Iv~KRk~qYE~~v~~np~nYD 323 (677)
T KOG1915|consen 251 AEFEERQKEYE-RARFIYKYALDHIPKGRAEELYKKYTA---FEKQFGDKEGI---EDAIVGKRKFQYEKEVSKNPYNYD 323 (677)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHhcCcccHHHHHHHHHH---HHHHhcchhhh---HHHHhhhhhhHHHHHHHhCCCCch
Confidence 33333444555 788888899998885432211111111 11122332111 111112222357788899999999
Q ss_pred HHHHH-----HhCCHHHHHHHHHHHHHhcCCCcHH---------HHHHHHH-HHHHcCChHHHHHHHHHHHhhcCC--CC
Q 005499 429 LFFDL-----EQRNLSTALRYAKQYIDATGGSVLK---------GWKLLAL-VLSAQQRFSEAEVVTDAALDETTK--WE 491 (693)
Q Consensus 429 ~~~~l-----~~~~~~~A~~~~~~al~~~p~~~~~---------~~~~la~-~~~~~g~~~~A~~~~~~al~~~p~--~~ 491 (693)
+|+.+ ..|+.+.-.+.|++++..-|... . .|.+.+. .-....+.+.+.++|+.++++-|. +.
T Consensus 324 sWfdylrL~e~~g~~~~Ire~yErAIanvpp~~-ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFt 402 (677)
T KOG1915|consen 324 SWFDYLRLEESVGDKDRIRETYERAIANVPPAS-EKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFT 402 (677)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCCchh-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccch
Confidence 99888 77999999999999998777543 2 1222221 113568999999999999999883 23
Q ss_pred chHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHH
Q 005499 492 QGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMG 571 (693)
Q Consensus 492 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 571 (693)
...+|...+....++.+...|.+.+-.++...|.+ .++.....+-.++++++....+|+
T Consensus 403 FaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~---------------------KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 403 FAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD---------------------KLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch---------------------hHHHHHHHHHHHHhhHHHHHHHHH
Confidence 35678889999999999999999999999998765 466666777788999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHH--HHHhCCCChHHHHHHHHHHHhhCCC
Q 005499 572 KARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSL--FSKLGPKALPVARSLLSDALRIEPT 649 (693)
Q Consensus 572 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~l~~A~~~~~~al~~~p~ 649 (693)
+-+...|.+..+|...|.+-..+|+.+.|...|+-|+....-+.+-+...+.+ -...|.++ .|..+|++.++..+.
T Consensus 462 kfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~e--kaR~LYerlL~rt~h 539 (677)
T KOG1915|consen 462 KFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFE--KARALYERLLDRTQH 539 (677)
T ss_pred HHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHH--HHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999998765555544444444 44567777 999999999998887
Q ss_pred CHHHHHHHHHHHH-----HcC-----------ChHHHHHHHHHHHhcc
Q 005499 650 NRKAWYYLGLVHK-----DDG-----------RIADAADCFQAASMLE 681 (693)
Q Consensus 650 ~~~~~~~lg~~~~-----~~g-----------~~~~A~~~~~~al~l~ 681 (693)
.. +|...+..-. ..| ....|...|++|....
T Consensus 540 ~k-vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~ 586 (677)
T KOG1915|consen 540 VK-VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYL 586 (677)
T ss_pred ch-HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHH
Confidence 65 8888777665 445 5667888898887643
No 72
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.75 E-value=4.7e-15 Score=148.30 Aligned_cols=335 Identities=19% Similarity=0.180 Sum_probs=230.0
Q ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHH
Q 005499 308 RWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLAAKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRM 387 (693)
Q Consensus 308 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 387 (693)
.++..+.-.+..++|...++..+.+++. .|++...+.+.|......|+.. +|..+.+.++..++ .. ..+|..
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k--~~eHgeslAmkGL~L~~lg~~~-ea~~~vr~glr~d~---~S--~vCwHv 80 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKK--FPEHGESLAMKGLTLNCLGKKE-EAYELVRLGLRNDL---KS--HVCWHV 80 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHh--CCccchhHHhccchhhcccchH-HHHHHHHHHhccCc---cc--chhHHH
Confidence 4555556666677888888888888884 4888887777777666666666 88888877777555 33 677888
Q ss_pred HHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChHHHHHH-----HhCCHHHHHHHHHHHHHhcCCCcHHHHHH
Q 005499 388 LGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNADLFFDL-----EQRNLSTALRYAKQYIDATGGSVLKGWKL 462 (693)
Q Consensus 388 lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-----~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 462 (693)
+|.++....++ ++|+.+|+.|+.++|+|..++..+ +.++++.....-.+.++..|... ..|..
T Consensus 81 ~gl~~R~dK~Y-----------~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~r-a~w~~ 148 (700)
T KOG1156|consen 81 LGLLQRSDKKY-----------DEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQR-ASWIG 148 (700)
T ss_pred HHHHHhhhhhH-----------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhH-HHHHH
Confidence 88888888888 888888888888888888877777 77788887777778888888777 77888
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhc---CCC---CchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccc
Q 005499 463 LALVLSAQQRFSEAEVVTDAALDET---TKW---EQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCL 536 (693)
Q Consensus 463 la~~~~~~g~~~~A~~~~~~al~~~---p~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 536 (693)
.+..+.-.|++..|..+++...... |+. ...........+....|.+++|++.+..--...
T Consensus 149 ~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i------------- 215 (700)
T KOG1156|consen 149 FAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI------------- 215 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH-------------
Confidence 8888888888888877777665543 200 011233344555566666666655544332211
Q ss_pred cchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHH-HHH-----------
Q 005499 537 SQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEAL-RAY----------- 604 (693)
Q Consensus 537 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~-~~~----------- 604 (693)
.+........+.++..++++++|...|...+..+|++...+..+-.++..-.+--++. ..|
T Consensus 216 -------~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e 288 (700)
T KOG1156|consen 216 -------VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHE 288 (700)
T ss_pred -------HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccc
Confidence 1223444556777777777777777777777777777665544444332111111111 111
Q ss_pred ---------------------------------------------------HHHHh-----hC--------------CCC
Q 005499 605 ---------------------------------------------------INALL-----IE--------------PSY 614 (693)
Q Consensus 605 ---------------------------------------------------~~al~-----~~--------------p~~ 614 (693)
++.+. ++ |-.
T Consensus 289 ~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Pt 368 (700)
T KOG1156|consen 289 CPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPT 368 (700)
T ss_pred cchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCch
Confidence 11110 00 111
Q ss_pred --hhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCC
Q 005499 615 --VPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASMLEESD 684 (693)
Q Consensus 615 --~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 684 (693)
.+.++.++.-+...|+++ .|..+++.++...|+-++.+..-|.++...|+.++|..++..+.+++-.|
T Consensus 369 tllWt~y~laqh~D~~g~~~--~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aD 438 (700)
T KOG1156|consen 369 TLLWTLYFLAQHYDKLGDYE--VALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTAD 438 (700)
T ss_pred HHHHHHHHHHHHHHHcccHH--HHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchh
Confidence 134566777888899999 99999999999999999999999999999999999999999999987554
No 73
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.75 E-value=4.8e-16 Score=149.55 Aligned_cols=192 Identities=14% Similarity=0.046 Sum_probs=177.4
Q ss_pred HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHH
Q 005499 434 EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAI 513 (693)
Q Consensus 434 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 513 (693)
..|++++|+..++++++..|.+. .++..+|.++...|++++|+..+++++...| .+...+..++.++...|++++|+
T Consensus 43 ~~~~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~~~g~~~~A~ 119 (234)
T TIGR02521 43 EQGDLEVAKENLDKALEHDPDDY-LAYLALALYYQQLGELEKAEDSFRRALTLNP--NNGDVLNNYGTFLCQQGKYEQAM 119 (234)
T ss_pred HCCCHHHHHHHHHHHHHhCcccH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcccHHHHH
Confidence 78999999999999999999998 9999999999999999999999999999999 78899999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 005499 514 ETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEG 593 (693)
Q Consensus 514 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 593 (693)
..+++++...+ . +.....+..+|.++...|++++|...+++++...|+++.++..+|.++..
T Consensus 120 ~~~~~~~~~~~-~-----------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 181 (234)
T TIGR02521 120 QQFEQAIEDPL-Y-----------------PQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYL 181 (234)
T ss_pred HHHHHHHhccc-c-----------------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHH
Confidence 99999997521 1 33467888999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCC
Q 005499 594 CGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEP 648 (693)
Q Consensus 594 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p 648 (693)
.|++++|+..+++++...|.++..+..++.++...|+.+ +|..+.+.+....|
T Consensus 182 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 182 RGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVA--AAQRYGAQLQKLFP 234 (234)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHH--HHHHHHHHHHhhCc
Confidence 999999999999999998988899999999999999998 99998887766544
No 74
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=1.1e-13 Score=137.11 Aligned_cols=125 Identities=22% Similarity=0.173 Sum_probs=91.3
Q ss_pred ccchhhhhcccCCcCHHHHHHHhhhccC--CCHHHHHHHHHHHHhhcCCHHHHHhhhccCCcchhhhhccccchhhhhhh
Q 005499 24 CMKAAEVEAKLDEGNIQEAESSLREGLS--LNFEEARALLGRLEYQRGNVEGALRVFDGIDLHAAIQRLQPSFSEKSASK 101 (693)
Q Consensus 24 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~~~~a~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (693)
-+.+..-..+..+|+|++|.....+.++ |++.++..---.+..+.++|++|+...++-......
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~-------------- 78 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVI-------------- 78 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhc--------------
Confidence 4567778889999999999999999994 577777776667778999999999666542111000
Q ss_pred ccCCCCCCCccchhhHHHHHHHHHHHHHHHhHhhCChHHHHHHHHHHHHHHHHhhhcCCCChhhhhhHHHHHHHHHhhhH
Q 005499 102 KCRSRSDSHVSVSQHAASLVLEAIYLKAKSLQKLGRLTEAANECKSVLDAVERIFQQGIPDAQVDNRLQETVSRAVELLP 181 (693)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~ 181 (693)
.-..|-+++|.+++++.++|.+.++ .++.. ++ ..+..-+
T Consensus 79 --------------------~~~~fEKAYc~Yrlnk~Dealk~~~-~~~~~--------~~------------~ll~L~A 117 (652)
T KOG2376|consen 79 --------------------NSFFFEKAYCEYRLNKLDEALKTLK-GLDRL--------DD------------KLLELRA 117 (652)
T ss_pred --------------------chhhHHHHHHHHHcccHHHHHHHHh-ccccc--------ch------------HHHHHHH
Confidence 0012789999999999999998876 11100 00 1333346
Q ss_pred HHHhhcCCchHHHHHHHHHhcc
Q 005499 182 ELWKQVGCDHDALAAYRRAVLS 203 (693)
Q Consensus 182 ~~~~~~g~~~~A~~~~~~~l~~ 203 (693)
.+++++|+|++|...|+..++.
T Consensus 118 QvlYrl~~ydealdiY~~L~kn 139 (652)
T KOG2376|consen 118 QVLYRLERYDEALDIYQHLAKN 139 (652)
T ss_pred HHHHHHhhHHHHHHHHHHHHhc
Confidence 7888999999999999999875
No 75
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.73 E-value=3.3e-15 Score=152.40 Aligned_cols=229 Identities=17% Similarity=0.119 Sum_probs=192.6
Q ss_pred HhCCHHHHHHHHHHHHHh--------cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhc--------CCCCchHHHH
Q 005499 434 EQRNLSTALRYAKQYIDA--------TGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDET--------TKWEQGPILR 497 (693)
Q Consensus 434 ~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~~ 497 (693)
.+|+++.|+..++.+++. .|.-. .....+|.+|..++++.+|+.+|++++.+. | .-..++.
T Consensus 211 ~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va-~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~--~va~~l~ 287 (508)
T KOG1840|consen 211 VQGRLEKAEPLCKQALRILEKTSGLKHLVVA-SMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP--AVAATLN 287 (508)
T ss_pred HhccHHHHHHHHHHHHHHHHHccCccCHHHH-HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH--HHHHHHH
Confidence 899999999999999998 34333 445569999999999999999999999852 3 3456789
Q ss_pred HHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC
Q 005499 498 LKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELK 577 (693)
Q Consensus 498 ~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 577 (693)
.++.+|...|++++|..++++++++..... ....+.-...+..++.++...+++++|..++++++++.
T Consensus 288 nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~------------~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 288 NLAVLYYKQGKFAEAEEYCERALEIYEKLL------------GASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred HHHHHHhccCChHHHHHHHHHHHHHHHHhh------------ccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 999999999999999999999999975521 12224456778899999999999999999999998763
Q ss_pred --------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--------CCChhHHHHHHHHHHHhCCCChHHHHHHHH
Q 005499 578 --------AYSAEMLHTEGVMHEGCGQTHEALRAYINALLIE--------PSYVPCKVLVGSLFSKLGPKALPVARSLLS 641 (693)
Q Consensus 578 --------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~l~~A~~~~~ 641 (693)
|.-+....++|.+|..+|++++|.+.|++++.+. +.....+..+|..|.+.+++. +|...|.
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~--~a~~l~~ 433 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYE--EAEQLFE 433 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccc--hHHHHHH
Confidence 2335678999999999999999999999999864 333567899999999999999 9999999
Q ss_pred HHHhh-------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 005499 642 DALRI-------EPTNRKAWYYLGLVHKDDGRIADAADCFQAASM 679 (693)
Q Consensus 642 ~al~~-------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 679 (693)
+++.+ .|+....+.+|+.+|..+|++++|+++-++++.
T Consensus 434 ~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 434 EAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 98875 234456788999999999999999999999885
No 76
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.72 E-value=1.2e-14 Score=149.34 Aligned_cols=309 Identities=13% Similarity=-0.020 Sum_probs=220.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHH
Q 005499 338 RPNDLMALLLAAKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLD 417 (693)
Q Consensus 338 ~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 417 (693)
+|+++.++..++.++...++.. ++...+.++.+..+...+. .......+.++...|++ ++|...++
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~e~~~~~a~~~~~~g~~-----------~~A~~~~~ 67 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERP-AAAAKAAAAAQALAARATE--RERAHVEALSAWIAGDL-----------PKALALLE 67 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHhccCCCH--HHHHHHHHHHHHHcCCH-----------HHHHHHHH
Confidence 5888888888887777776666 6677777777666644333 55566778888888888 88888888
Q ss_pred HHHhcCCCChHHHH---HH-----HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCC
Q 005499 418 GASTFENNNADLFF---DL-----EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTK 489 (693)
Q Consensus 418 ~al~~~p~~~~~~~---~l-----~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 489 (693)
+++..+|++..++. .. ..+....+...+.......|... .++..+|.++..+|++++|+..++++++..|
T Consensus 68 ~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p- 145 (355)
T cd05804 68 QLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYW-YLLGMLAFGLEEAGQYDRAEEAARRALELNP- 145 (355)
T ss_pred HHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-
Confidence 88888888876654 12 33444444444444334456555 6777889999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHH
Q 005499 490 WEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAIC 569 (693)
Q Consensus 490 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 569 (693)
++..++..++.++...|++++|+.++++++...|..+ ......|..++.++...|++++|+..
T Consensus 146 -~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~----------------~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 146 -DDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSS----------------MLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred -CCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCc----------------chhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 7889999999999999999999999999998875432 22245677899999999999999999
Q ss_pred HHHHHhhCCC--CHHHHH---HHHHHHHHCCChHHHHHH--H-HHHHhhCCCC--hhHHHHHHHHHHHhCCCChHHHHHH
Q 005499 570 MGKARELKAY--SAEMLH---TEGVMHEGCGQTHEALRA--Y-INALLIEPSY--VPCKVLVGSLFSKLGPKALPVARSL 639 (693)
Q Consensus 570 ~~~al~~~p~--~~~~~~---~lg~~~~~~g~~~~A~~~--~-~~al~~~p~~--~~~~~~la~~~~~~g~~~l~~A~~~ 639 (693)
|++++...|. ...... .+...+...|....+..+ . .......|.. .......+.++...|+.+ +|...
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~a~~~ 286 (355)
T cd05804 209 YDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKD--ALDKL 286 (355)
T ss_pred HHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHH--HHHHH
Confidence 9999876662 222111 223333445544433333 1 1111111221 223345777788888888 99999
Q ss_pred HHHHHhhCCC---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Q 005499 640 LSDALRIEPT---------NRKAWYYLGLVHKDDGRIADAADCFQAASMLE 681 (693)
Q Consensus 640 ~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 681 (693)
+.......-. ........+.++...|++++|++.+..++.+.
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8887653321 23455678999999999999999999998764
No 77
>PLN02789 farnesyltranstransferase
Probab=99.72 E-value=5.5e-16 Score=151.68 Aligned_cols=207 Identities=13% Similarity=0.048 Sum_probs=180.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhC-ChhHHHHHHHHHHHHHHhhhhhcCCcccc
Q 005499 458 KGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQA-LPMDAIETYRYLLALVQAQRKSFGPLRCL 536 (693)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 536 (693)
.++..+-.++...+++++|+..+.+++..+| .+..+|..++.++..+| ++++++..+.++++.+|++
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP--~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn---------- 105 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLNP--GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN---------- 105 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCc--hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc----------
Confidence 3444444445566788999999999999999 89999999999999998 6899999999999998554
Q ss_pred cchhhhcccHHHHHHHHHHHHHhCCCh--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 005499 537 SQIEDDKVNEFQVWHGLANLYSGLSHW--KDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSY 614 (693)
Q Consensus 537 ~~~~~~~~~~~~~~~~la~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 614 (693)
..+|...+.++...|+. ++++.+++++++.+|.+..+|..++.++...|++++|++++.++++.+|.+
T Consensus 106 ----------yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N 175 (320)
T PLN02789 106 ----------YQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN 175 (320)
T ss_pred ----------hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc
Confidence 68999999999888874 788999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHh---CCCC--hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcccCCC
Q 005499 615 VPCKVLVGSLFSKL---GPKA--LPVARSLLSDALRIEPTNRKAWYYLGLVHKD----DGRIADAADCFQAASMLEESDP 685 (693)
Q Consensus 615 ~~~~~~la~~~~~~---g~~~--l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~ 685 (693)
..+|+.++.++..+ |..+ +++++.+..+++..+|++..+|+.++.++.. .++..+|++.+.+++..+|+++
T Consensus 176 ~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~ 255 (320)
T PLN02789 176 NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHV 255 (320)
T ss_pred hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcH
Confidence 99999999998876 3332 2378888999999999999999999999988 4567789999999988877665
Q ss_pred C
Q 005499 686 I 686 (693)
Q Consensus 686 ~ 686 (693)
.
T Consensus 256 ~ 256 (320)
T PLN02789 256 F 256 (320)
T ss_pred H
Confidence 3
No 78
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=3e-16 Score=148.47 Aligned_cols=295 Identities=15% Similarity=0.085 Sum_probs=213.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHh
Q 005499 275 MEHLTYALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLAAKICSE 354 (693)
Q Consensus 275 ~~~l~~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~ 354 (693)
....+..+.....|..|+..+..+++..|++...|...+.+++..|+|++|....++.++ .+|+.+......++++
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r--~kd~~~k~~~r~~~c~-- 127 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVR--LKDGFSKGQLREGQCH-- 127 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhhee--cCCCccccccchhhhh--
Confidence 344455566666666666666666666666666666666666666666666666666655 3455544444444444
Q ss_pred cCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChHHHHHHH
Q 005499 355 DCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNADLFFDLE 434 (693)
Q Consensus 355 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 434 (693)
...+.. .+|.+.|+.. .|
T Consensus 128 --------------------------------------~a~~~~-----------i~A~~~~~~~---~~---------- 145 (486)
T KOG0550|consen 128 --------------------------------------LALSDL-----------IEAEEKLKSK---QA---------- 145 (486)
T ss_pred --------------------------------------hhhHHH-----------HHHHHHhhhh---hh----------
Confidence 333333 3333333300 00
Q ss_pred hCCHHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhH
Q 005499 435 QRNLSTALRYAKQYIDAT---GGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMD 511 (693)
Q Consensus 435 ~~~~~~A~~~~~~al~~~---p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~ 511 (693)
+....|+..+++.+..+ |... .+...-+.++...|++++|...--..+++++ .+..+++..|.++...++.+.
T Consensus 146 -~~~anal~~~~~~~~s~s~~pac~-~a~~lka~cl~~~~~~~~a~~ea~~ilkld~--~n~~al~vrg~~~yy~~~~~k 221 (486)
T KOG0550|consen 146 -YKAANALPTLEKLAPSHSREPACF-KAKLLKAECLAFLGDYDEAQSEAIDILKLDA--TNAEALYVRGLCLYYNDNADK 221 (486)
T ss_pred -hHHhhhhhhhhcccccccCCchhh-HHHHhhhhhhhhcccchhHHHHHHHHHhccc--chhHHHHhcccccccccchHH
Confidence 00111222222222111 3333 5566678888889999999999999999999 889999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCC----HHHHHHH
Q 005499 512 AIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYS----AEMLHTE 587 (693)
Q Consensus 512 A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l 587 (693)
|+..|++++.++|.+.++-.. ...+.....|..-|+-.++.|++.+|.++|..++.++|.+ +..+.++
T Consensus 222 a~~hf~qal~ldpdh~~sk~~--------~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nr 293 (486)
T KOG0550|consen 222 AINHFQQALRLDPDHQKSKSA--------SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNR 293 (486)
T ss_pred HHHHHhhhhccChhhhhHHhH--------hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHh
Confidence 999999999998887644211 1225557888999999999999999999999999999986 4568899
Q ss_pred HHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCC
Q 005499 588 GVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPT 649 (693)
Q Consensus 588 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~ 649 (693)
+.+..+.|+..+|+...+.++.++|....++...|.|+..+++++ +|.+.|+++++...+
T Consensus 294 a~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e--~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 294 ALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWE--EAVEDYEKAMQLEKD 353 (486)
T ss_pred HhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhccc
Confidence 999999999999999999999999999999999999999999999 999999999987655
No 79
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=2.5e-16 Score=148.97 Aligned_cols=267 Identities=19% Similarity=0.054 Sum_probs=229.8
Q ss_pred hHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChHHHHHH-----HhCCHHHHHHHHHHHHHhcCCCcH
Q 005499 383 VGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNADLFFDL-----EQRNLSTALRYAKQYIDATGGSVL 457 (693)
Q Consensus 383 ~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-----~~~~~~~A~~~~~~al~~~p~~~~ 457 (693)
.-....|..+..+.+| .+|+..+..|+...|++...|... ..+++++|....++.+++.|...
T Consensus 50 e~~k~~gn~~yk~k~Y-----------~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~- 117 (486)
T KOG0550|consen 50 EEAKEEGNAFYKQKTY-----------GNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFS- 117 (486)
T ss_pred HHHHhhcchHHHHhhH-----------HHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCcc-
Confidence 3344556677788888 999999999999999997777666 88999999999999999999998
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHH------------hhcCCC----CchHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q 005499 458 KGWKLLALVLSAQQRFSEAEVVTDAAL------------DETTKW----EQGPILRLKAKLKIAQALPMDAIETYRYLLA 521 (693)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~al------------~~~p~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 521 (693)
..+...+.++...++..+|...++..- ..-|.. ....+....+.++...|++++|+..--..++
T Consensus 118 k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilk 197 (486)
T KOG0550|consen 118 KGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILK 197 (486)
T ss_pred ccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHh
Confidence 888888999888888888776655211 011100 2234556788999999999999999999998
Q ss_pred HHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCH------------HHHHHHHH
Q 005499 522 LVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSA------------EMLHTEGV 589 (693)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------------~~~~~lg~ 589 (693)
++ +.+..+++..|.++...++.+.|+..|++++.++|+.. ..|...|.
T Consensus 198 ld--------------------~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN 257 (486)
T KOG0550|consen 198 LD--------------------ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGN 257 (486)
T ss_pred cc--------------------cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhh
Confidence 87 45578999999999999999999999999999999864 35777899
Q ss_pred HHHHCCChHHHHHHHHHHHhhCCCCh----hHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 005499 590 MHEGCGQTHEALRAYINALLIEPSYV----PCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDG 665 (693)
Q Consensus 590 ~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 665 (693)
-.++.|++..|.++|..+|.++|++. ..+.+++.+..++|+.. +|+...+.++.++|....++...|.++..++
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~--eaisdc~~Al~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLR--EAISDCNEALKIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCch--hhhhhhhhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999875 46889999999999999 9999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcccC
Q 005499 666 RIADAADCFQAASMLEES 683 (693)
Q Consensus 666 ~~~~A~~~~~~al~l~p~ 683 (693)
+|++|++.|++|+++..+
T Consensus 336 ~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHhhccc
Confidence 999999999999998766
No 80
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.71 E-value=1.3e-14 Score=133.19 Aligned_cols=265 Identities=16% Similarity=0.103 Sum_probs=222.5
Q ss_pred HHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChHHHHHH-----HhCCHHHHHHHHHHHHHhcCCCc----H
Q 005499 387 MLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNADLFFDL-----EQRNLSTALRYAKQYIDATGGSV----L 457 (693)
Q Consensus 387 ~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-----~~~~~~~A~~~~~~al~~~p~~~----~ 457 (693)
.-|.-+....+. ++|++.|..+++.+|...++...+ ..|..+.|+..-+..++ .|+-+ .
T Consensus 40 v~GlNfLLs~Q~-----------dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~ 107 (389)
T COG2956 40 VKGLNFLLSNQP-----------DKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRL 107 (389)
T ss_pred HhHHHHHhhcCc-----------chHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHH
Confidence 445666667788 999999999999999998888777 88999999999887765 45443 1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCccccc
Q 005499 458 KGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLS 537 (693)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 537 (693)
.+...+|.-|...|-++.|..+|....+... -...++..+..+|....++++|++..++..++.+...
T Consensus 108 lAl~qL~~Dym~aGl~DRAE~~f~~L~de~e--fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~---------- 175 (389)
T COG2956 108 LALQQLGRDYMAAGLLDRAEDIFNQLVDEGE--FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY---------- 175 (389)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHhcchh--hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc----------
Confidence 4678899999999999999999999887665 5678899999999999999999999999988865432
Q ss_pred chhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCCh-h
Q 005499 538 QIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYV-P 616 (693)
Q Consensus 538 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~ 616 (693)
...-+..+..++..+....+.+.|...+.++++.+|.+..+-..+|.++...|+|+.|++.++.+++.+|+.. .
T Consensus 176 -----~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~e 250 (389)
T COG2956 176 -----RVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSE 250 (389)
T ss_pred -----hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHH
Confidence 1233677889999999999999999999999999999999999999999999999999999999999999875 5
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccC
Q 005499 617 CKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASMLEES 683 (693)
Q Consensus 617 ~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 683 (693)
+...|..+|.++|+.+ +.+.++.++.+..++ +.+-..++.+-....-.+.|..+..+-+...|+
T Consensus 251 vl~~L~~~Y~~lg~~~--~~~~fL~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt 314 (389)
T COG2956 251 VLEMLYECYAQLGKPA--EGLNFLRRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPT 314 (389)
T ss_pred HHHHHHHHHHHhCCHH--HHHHHHHHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc
Confidence 7888999999999998 999999999998776 345555666666666667777777777777665
No 81
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.71 E-value=7e-14 Score=128.46 Aligned_cols=265 Identities=14% Similarity=0.067 Sum_probs=158.0
Q ss_pred HHHHhcCCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcH
Q 005499 280 YALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLAAKICSEDCHLA 359 (693)
Q Consensus 280 ~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~ 359 (693)
.-+..+.+.++|++.|-.+++.++...++.+.+|..+.+.|..+.|+.+-+..+.. |+
T Consensus 43 lNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pd------------------- 100 (389)
T COG2956 43 LNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PD------------------- 100 (389)
T ss_pred HHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CC-------------------
Confidence 33444555555555555555555555555555555555555555555555555542 33
Q ss_pred HHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChHHHHHH-----H
Q 005499 360 AEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNADLFFDL-----E 434 (693)
Q Consensus 360 ~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-----~ 434 (693)
-+......+...||.-|...|-+ +.|...|........--..+...+ .
T Consensus 101 ----------------lT~~qr~lAl~qL~~Dym~aGl~-----------DRAE~~f~~L~de~efa~~AlqqLl~IYQ~ 153 (389)
T COG2956 101 ----------------LTFEQRLLALQQLGRDYMAAGLL-----------DRAEDIFNQLVDEGEFAEGALQQLLNIYQA 153 (389)
T ss_pred ----------------CchHHHHHHHHHHHHHHHHhhhh-----------hHHHHHHHHHhcchhhhHHHHHHHHHHHHH
Confidence 22222344555556666666666 666666665543222122222222 3
Q ss_pred hCCHHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChh
Q 005499 435 QRNLSTALRYAKQYIDATGGSV----LKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPM 510 (693)
Q Consensus 435 ~~~~~~A~~~~~~al~~~p~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~ 510 (693)
..++++|++..++..++.+... ...+..++..+....+.+.|...+.++++.+| ..+.+-..+|.+....|+|+
T Consensus 154 treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~--~cvRAsi~lG~v~~~~g~y~ 231 (389)
T COG2956 154 TREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADK--KCVRASIILGRVELAKGDYQ 231 (389)
T ss_pred hhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCc--cceehhhhhhHHHHhccchH
Confidence 4445555555555554444332 13455666666677777777777777777777 67777777777777777777
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 005499 511 DAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVM 590 (693)
Q Consensus 511 ~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 590 (693)
.|++.++.+++.+|... +.+...|..+|...|+.++.+..+.++.+..++.. +...++.+
T Consensus 232 ~AV~~~e~v~eQn~~yl-------------------~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~-~~l~l~~l 291 (389)
T COG2956 232 KAVEALERVLEQNPEYL-------------------SEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD-AELMLADL 291 (389)
T ss_pred HHHHHHHHHHHhChHHH-------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc-HHHHHHHH
Confidence 77777777777776553 56667777777777777777777777777666543 33334444
Q ss_pred HHHCCChHHHHHHHHHHHhhCCCCh
Q 005499 591 HEGCGQTHEALRAYINALLIEPSYV 615 (693)
Q Consensus 591 ~~~~g~~~~A~~~~~~al~~~p~~~ 615 (693)
-....-.+.|..++.+-+...|+-.
T Consensus 292 ie~~~G~~~Aq~~l~~Ql~r~Pt~~ 316 (389)
T COG2956 292 IELQEGIDAAQAYLTRQLRRKPTMR 316 (389)
T ss_pred HHHhhChHHHHHHHHHHHhhCCcHH
Confidence 4445555667777777777777643
No 82
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=2.5e-13 Score=126.06 Aligned_cols=461 Identities=15% Similarity=0.073 Sum_probs=291.3
Q ss_pred hhcccCCcCHHHHHHHhhhccCCC---HHHHHHHHHHHHhhcCCHHHHHhhhccCCcchhhhhccccchhhhhhhccCCC
Q 005499 30 VEAKLDEGNIQEAESSLREGLSLN---FEEARALLGRLEYQRGNVEGALRVFDGIDLHAAIQRLQPSFSEKSASKKCRSR 106 (693)
Q Consensus 30 ~~~~~~~g~~~~A~~~~~~~l~~~---~~~a~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (693)
-+-++.+.||..|+..++-.++.+ ..+...++|.++++.|+|++|+..|.-+...... +
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~----~-------------- 90 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDA----P-------------- 90 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCC----C--------------
Confidence 345777888999988877766332 2356778999999999999999999765322100 0
Q ss_pred CCCCccchhhHHHHHHHHHHHHHHHhHhhCChHHHHHHHHHHHHHHHHhhhcCCCChhhhhhHHHHHHHHHhhhHHHHhh
Q 005499 107 SDSHVSVSQHAASLVLEAIYLKAKSLQKLGRLTEAANECKSVLDAVERIFQQGIPDAQVDNRLQETVSRAVELLPELWKQ 186 (693)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~ 186 (693)
.+....+|.|++-+|.|.||...-.++ |.+. ...+.+.+ +-.+
T Consensus 91 ---------------~el~vnLAcc~FyLg~Y~eA~~~~~ka------------~k~p-------L~~RLlfh---lahk 133 (557)
T KOG3785|consen 91 ---------------AELGVNLACCKFYLGQYIEAKSIAEKA------------PKTP-------LCIRLLFH---LAHK 133 (557)
T ss_pred ---------------cccchhHHHHHHHHHHHHHHHHHHhhC------------CCCh-------HHHHHHHH---HHHH
Confidence 145677889999999999987553332 1111 01111111 1122
Q ss_pred cCCchHHHHHHHHHhcccCCCChhHHHHHHHHHHHHhhhcccccCCCCCcCCCCCcccCCChhHHHHHHHHHHHHHHhhc
Q 005499 187 VGCDHDALAAYRRAVLSQWNLDNECCARIQKRFAVFLLHSGVEAGPPSLGSQVEGSYAPKNNLEEAILLLLILMKKYHLG 266 (693)
Q Consensus 187 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 266 (693)
.|+-++ +..|.....+
T Consensus 134 lndEk~------------------------------------------------------------~~~fh~~LqD---- 149 (557)
T KOG3785|consen 134 LNDEKR------------------------------------------------------------ILTFHSSLQD---- 149 (557)
T ss_pred hCcHHH------------------------------------------------------------HHHHHHHHhh----
Confidence 222111 1111111111
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHH
Q 005499 267 KIKWDPAVMEHLTYALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALL 346 (693)
Q Consensus 267 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~ 346 (693)
..+-...|+.+....-.|++|++.|.+++..+|+-..+-..+|.||++..-|+-+.+++.--++.. |+.+.+..
T Consensus 150 ----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~--pdStiA~N 223 (557)
T KOG3785|consen 150 ----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF--PDSTIAKN 223 (557)
T ss_pred ----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC--CCcHHHHH
Confidence 111122344445555678999999999998887777777789999999999999999999999954 99988888
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCC
Q 005499 347 LAAKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNN 426 (693)
Q Consensus 347 ~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 426 (693)
+.+...+..-+-. .|..-.+...+.... .+ ..+....+.-+-.
T Consensus 224 Lkacn~fRl~ngr-~ae~E~k~ladN~~~---------------------~~-----------~f~~~l~rHNLVv---- 266 (557)
T KOG3785|consen 224 LKACNLFRLINGR-TAEDEKKELADNIDQ---------------------EY-----------PFIEYLCRHNLVV---- 266 (557)
T ss_pred HHHHHHhhhhccc-hhHHHHHHHHhcccc---------------------cc-----------hhHHHHHHcCeEE----
Confidence 7776655443332 333333332221110 01 1111111111111
Q ss_pred hHHHHHHHhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHh
Q 005499 427 ADLFFDLEQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQ 506 (693)
Q Consensus 427 ~~~~~~l~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 506 (693)
-.+-+.|+..+-..++.-| ++..+++..|..+++.++|..+++. .+| ..+.-+...|.+....
T Consensus 267 --------FrngEgALqVLP~L~~~IP----EARlNL~iYyL~q~dVqeA~~L~Kd---l~P--ttP~EyilKgvv~aal 329 (557)
T KOG3785|consen 267 --------FRNGEGALQVLPSLMKHIP----EARLNLIIYYLNQNDVQEAISLCKD---LDP--TTPYEYILKGVVFAAL 329 (557)
T ss_pred --------EeCCccHHHhchHHHhhCh----HhhhhheeeecccccHHHHHHHHhh---cCC--CChHHHHHHHHHHHHh
Confidence 1112334444444444333 7888889999999999999988754 567 6778888899999998
Q ss_pred CChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHH
Q 005499 507 ALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHT 586 (693)
Q Consensus 507 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 586 (693)
|+--...+.++-+-+...-- +... ..-+.......++.+++-..++++.+.+++..-...-++....++
T Consensus 330 GQe~gSreHlKiAqqffqlV----G~Sa-------~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N 398 (557)
T KOG3785|consen 330 GQETGSREHLKIAQQFFQLV----GESA-------LECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN 398 (557)
T ss_pred hhhcCcHHHHHHHHHHHHHh----cccc-------cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH
Confidence 87665555554443322111 0000 001112334566777778888999999988877777778888899
Q ss_pred HHHHHHHCCChHHHHHHHHHHHhhC-CCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHc
Q 005499 587 EGVMHEGCGQTHEALRAYINALLIE-PSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNR-KAWYYLGLVHKDD 664 (693)
Q Consensus 587 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~ 664 (693)
++......|++.+|.+.|-+.-..+ .+.......|+.||...++++ .|..++-+. ..|... ..+..++..++..
T Consensus 399 ~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~--lAW~~~lk~--~t~~e~fsLLqlIAn~CYk~ 474 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQ--LAWDMMLKT--NTPSERFSLLQLIANDCYKA 474 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCch--HHHHHHHhc--CCchhHHHHHHHHHHHHHHH
Confidence 9999999999999999998775544 233445677899999999999 887776442 123222 3344578888888
Q ss_pred CChHHHHHHHHHHHhcccCC
Q 005499 665 GRIADAADCFQAASMLEESD 684 (693)
Q Consensus 665 g~~~~A~~~~~~al~l~p~~ 684 (693)
+.+--|...|...-.++|+.
T Consensus 475 ~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 475 NEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHHHHHhhhHHHccCCCc
Confidence 99888888888777777764
No 83
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.67 E-value=6.6e-14 Score=142.95 Aligned_cols=259 Identities=21% Similarity=0.184 Sum_probs=203.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcC--CCcc-hhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHH
Q 005499 337 ERPNDLMALLLAAKICSEDCHLAAEGIQYARTALSNAQG--KDEH-LKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEAL 413 (693)
Q Consensus 337 ~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~-~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~ 413 (693)
.+|.-......++..|..++++. .|+..++.+++...+ ...+ ........+|..|..++++ .+|+
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e-~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~-----------~eAv 261 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLE-KAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKY-----------DEAV 261 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccH-----------HHHH
Confidence 35777777777888999999988 999999999887311 1112 2244555699999999999 9999
Q ss_pred HHHHHHHhcCCCChHHHHHHHhCCHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCC--
Q 005499 414 KSLDGASTFENNNADLFFDLEQRNLSTALRYAKQYIDATGGSV--LKGWKLLALVLSAQQRFSEAEVVTDAALDETTK-- 489 (693)
Q Consensus 414 ~~~~~al~~~p~~~~~~~~l~~~~~~~A~~~~~~al~~~p~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-- 489 (693)
..|++|+.+.. ..+ .++++ ..++..||.+|...|++++|..++++++++..+
T Consensus 262 ~ly~~AL~i~e----------------------~~~--G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~ 317 (508)
T KOG1840|consen 262 NLYEEALTIRE----------------------EVF--GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLL 317 (508)
T ss_pred HHHHHHHHHHH----------------------Hhc--CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhh
Confidence 99999885421 111 22222 167899999999999999999999999886431
Q ss_pred -C---CchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHH
Q 005499 490 -W---EQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKD 565 (693)
Q Consensus 490 -~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 565 (693)
. .-...+..++.++..++++++|..++++++++..+.+ ...++..+....++|.+|..+|++++
T Consensus 318 ~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~------------g~~~~~~a~~~~nl~~l~~~~gk~~e 385 (508)
T KOG1840|consen 318 GASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP------------GEDNVNLAKIYANLAELYLKMGKYKE 385 (508)
T ss_pred ccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc------------cccchHHHHHHHHHHHHHHHhcchhH
Confidence 0 2344577889999999999999999999999875332 12224557899999999999999999
Q ss_pred HHHHHHHHHhhC--------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh-------CCCChhHHHHHHHHHHHhCC
Q 005499 566 VAICMGKARELK--------AYSAEMLHTEGVMHEGCGQTHEALRAYINALLI-------EPSYVPCKVLVGSLFSKLGP 630 (693)
Q Consensus 566 A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~ 630 (693)
|.+.|++++.+. +.....+..+|..+.+.+++.+|...|.++..+ .|+....+.+|+.+|..+|+
T Consensus 386 a~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~ 465 (508)
T KOG1840|consen 386 AEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGN 465 (508)
T ss_pred HHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHccc
Confidence 999999999874 233557889999999999999999999988765 24445689999999999999
Q ss_pred CChHHHHHHHHHHHh
Q 005499 631 KALPVARSLLSDALR 645 (693)
Q Consensus 631 ~~l~~A~~~~~~al~ 645 (693)
++ +|+++.++++.
T Consensus 466 ~e--~a~~~~~~~~~ 478 (508)
T KOG1840|consen 466 YE--AAEELEEKVLN 478 (508)
T ss_pred HH--HHHHHHHHHHH
Confidence 99 99999999885
No 84
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.63 E-value=1.9e-14 Score=138.09 Aligned_cols=187 Identities=11% Similarity=-0.099 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCch---HHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcc
Q 005499 458 KGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQG---PILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLR 534 (693)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~ 534 (693)
..++.+|..+...|++++|+..+++++..+| .++ .+++.+|.++...|++++|+..|+++++..|++
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~-------- 103 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYP--FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNH-------- 103 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC--------
Confidence 6677777777777777777777777777777 443 466777777777777777777777777777655
Q ss_pred cccchhhhcccHHHHHHHHHHHHHhC--------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHH
Q 005499 535 CLSQIEDDKVNEFQVWHGLANLYSGL--------SHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYIN 606 (693)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~la~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 606 (693)
+....+++.+|.++... |++++|+..+++++..+|++..++..+..+.... ..
T Consensus 104 ---------~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~----~~------ 164 (235)
T TIGR03302 104 ---------PDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLR----NR------ 164 (235)
T ss_pred ---------CchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH----HH------
Confidence 33345677777777665 6677777777777777777655543322221110 00
Q ss_pred HHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhccc
Q 005499 607 ALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTN---RKAWYYLGLVHKDDGRIADAADCFQAASMLEE 682 (693)
Q Consensus 607 al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 682 (693)
.......+|.++...|++. +|+..+++++...|++ +.+++.+|.++...|++++|..+++......|
T Consensus 165 -------~~~~~~~~a~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 165 -------LAGKELYVARFYLKRGAYV--AAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred -------HHHHHHHHHHHHHHcCChH--HHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 0112357888999999999 9999999999987764 58999999999999999999999888766554
No 85
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=3e-12 Score=127.15 Aligned_cols=409 Identities=13% Similarity=0.048 Sum_probs=227.3
Q ss_pred CCcccCCChhHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHC
Q 005499 240 EGSYAPKNNLEEAILLLLILMKKYHLGKIKWDPAVMEHLTYALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSAI 319 (693)
Q Consensus 240 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~ 319 (693)
.+.+...++|++|+... ..++...|+++.+...-..++...++|+.|....+.-......+ ...+..|.|.++.
T Consensus 19 ln~~~~~~e~e~a~k~~-----~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTA-----NKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRL 92 (652)
T ss_pred HHHhccchHHHHHHHHH-----HHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHc
Confidence 45677788888887655 55666778888888888888888888888886665433211111 1226788888899
Q ss_pred CCcHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhccc
Q 005499 320 GQNDAALNLLRKSLHKHERPNDLMALLLAAKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVS 399 (693)
Q Consensus 320 g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~ 399 (693)
++.++|+..++ . .++.+...+.+.|.+++..+++. +|...|+..++......+ ......+ ......
T Consensus 93 nk~Dealk~~~-~----~~~~~~~ll~L~AQvlYrl~~yd-ealdiY~~L~kn~~dd~d---~~~r~nl---~a~~a~-- 158 (652)
T KOG2376|consen 93 NKLDEALKTLK-G----LDRLDDKLLELRAQVLYRLERYD-EALDIYQHLAKNNSDDQD---EERRANL---LAVAAA-- 158 (652)
T ss_pred ccHHHHHHHHh-c----ccccchHHHHHHHHHHHHHhhHH-HHHHHHHHHHhcCCchHH---HHHHHHH---HHHHHh--
Confidence 99999888888 2 44667778888888888888888 888888888774432111 1111111 000000
Q ss_pred CChHHHhHHHHHHHHHHHHHHhcCCC-ChHHHHHH-----HhCCHHHHHHHHHHHHHhcC-----CC---------cHHH
Q 005499 400 SSDYERSRLQSEALKSLDGASTFENN-NADLFFDL-----EQRNLSTALRYAKQYIDATG-----GS---------VLKG 459 (693)
Q Consensus 400 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l-----~~~~~~~A~~~~~~al~~~p-----~~---------~~~~ 459 (693)
-.+ . +.+.+...|. ..+.+++. ..|+|.+|++.+++++++.. ++ ...+
T Consensus 159 ----------l~~-~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~I 226 (652)
T KOG2376|consen 159 ----------LQV-Q-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPI 226 (652)
T ss_pred ----------hhH-H-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHH
Confidence 001 1 2333333333 33444444 67788888888877744321 00 0023
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhC---Ch-h-HHHHHHHHHHHHHHhhhhh-----
Q 005499 460 WKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQA---LP-M-DAIETYRYLLALVQAQRKS----- 529 (693)
Q Consensus 460 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g---~~-~-~A~~~~~~~l~~~~~~~~~----- 529 (693)
...++.++..+|+..+|..+|...+..+| .+........+-+.... ++ + .++..++......+.....
T Consensus 227 rvQlayVlQ~~Gqt~ea~~iy~~~i~~~~--~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~ 304 (652)
T KOG2376|consen 227 RVQLAYVLQLQGQTAEASSIYVDIIKRNP--ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKK 304 (652)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhcC--CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 56677777777888888888887777777 34433322222222111 11 1 1111121111111110000
Q ss_pred ----c-----------CCcccccc----hhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCC-HHHHHHHHH
Q 005499 530 ----F-----------GPLRCLSQ----IEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYS-AEMLHTEGV 589 (693)
Q Consensus 530 ----~-----------~~~~~~~~----~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~ 589 (693)
+ +....+.. .....|..............+...+..|..++......+|.. ..+...++.
T Consensus 305 qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQ 384 (652)
T KOG2376|consen 305 QKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQ 384 (652)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHH
Confidence 0 00000000 111112211112222222233335777777777777777776 567777888
Q ss_pred HHHHCCChHHHHHHHHHHH--------hhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhh-------CCCCHHHH
Q 005499 590 MHEGCGQTHEALRAYINAL--------LIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRI-------EPTNRKAW 654 (693)
Q Consensus 590 ~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~-------~p~~~~~~ 654 (693)
+...+|+++.|+..+...+ ... ..+.+...+-.++.+.++.+ .|...+.+++.. .+.....|
T Consensus 385 l~is~gn~~~A~~il~~~~~~~~ss~~~~~-~~P~~V~aiv~l~~~~~~~~--~a~~vl~~Ai~~~~~~~t~s~~l~~~~ 461 (652)
T KOG2376|consen 385 LKISQGNPEVALEILSLFLESWKSSILEAK-HLPGTVGAIVALYYKIKDND--SASAVLDSAIKWWRKQQTGSIALLSLM 461 (652)
T ss_pred HHHhcCCHHHHHHHHHHHhhhhhhhhhhhc-cChhHHHHHHHHHHhccCCc--cHHHHHHHHHHHHHHhcccchHHHhHH
Confidence 8888888888888887332 221 12233334445556666666 555555555542 22223345
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcccCCC
Q 005499 655 YYLGLVHKDDGRIADAADCFQAASMLEESDP 685 (693)
Q Consensus 655 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 685 (693)
...+..-.+.|+-++|...+++.++.+|++.
T Consensus 462 ~~aa~f~lr~G~~~ea~s~leel~k~n~~d~ 492 (652)
T KOG2376|consen 462 REAAEFKLRHGNEEEASSLLEELVKFNPNDT 492 (652)
T ss_pred HHHhHHHHhcCchHHHHHHHHHHHHhCCchH
Confidence 5566666777888888888888888777664
No 86
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.59 E-value=2.9e-14 Score=123.58 Aligned_cols=113 Identities=11% Similarity=-0.031 Sum_probs=103.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhC
Q 005499 550 WHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLG 629 (693)
Q Consensus 550 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 629 (693)
+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++.++|+++.+++++|.++..+|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 55678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 005499 630 PKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDD 664 (693)
Q Consensus 630 ~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 664 (693)
+++ +|+..|+++++..|+++..+..+|.+....
T Consensus 107 ~~~--eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 107 EPG--LAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CHH--HHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 988 999999999999999999998888876543
No 87
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.59 E-value=1.9e-11 Score=126.80 Aligned_cols=282 Identities=12% Similarity=0.029 Sum_probs=150.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcC
Q 005499 277 HLTYALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLAAKICSEDC 356 (693)
Q Consensus 277 ~l~~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~ 356 (693)
....++...|+++.|++.+++..+...+.....-..|.++.+.|++++|...|+..+. .+|++...+..+..+.....
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~--rNPdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELID--RNPDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHhhhc
Confidence 3345677889999999999888887778888888889999999999999999999999 45999888877776552222
Q ss_pred ----CcHHHHHHHHHHHHHhhcCCCcch-------hHhHHHHHHHHH----hhhhcccC--------ChHHHhHHHHHHH
Q 005499 357 ----HLAAEGIQYARTALSNAQGKDEHL-------KGVGLRMLGLCL----GRHAKVSS--------SDYERSRLQSEAL 413 (693)
Q Consensus 357 ----~~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~lg~~~----~~~~~~~~--------~~~~~~~~~~~A~ 413 (693)
...+.-..++++.....|...... ....+......| ...|-++. .+..+.....+-.
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred ccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHH
Confidence 223355667777666655322110 001111111111 11111100 0011111112222
Q ss_pred HHHHHHHhcC----------CCChHH--H--HHH-----HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChH
Q 005499 414 KSLDGASTFE----------NNNADL--F--FDL-----EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFS 474 (693)
Q Consensus 414 ~~~~~al~~~----------p~~~~~--~--~~l-----~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~ 474 (693)
.-+...+... ...+.+ | +.+ ..|++++|+.+++++++..|..+ +.+...|.++...|++.
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~-ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLV-ELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHCCCHH
Confidence 2222221110 011111 1 111 55555666666666666555555 55555666666666666
Q ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHH--HH
Q 005499 475 EAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVW--HG 552 (693)
Q Consensus 475 ~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 552 (693)
+|...++.+..+++ .+-.+....+..+.+.|+.++|...+......+- ++ ..+-...--.| ..
T Consensus 246 ~Aa~~~~~Ar~LD~--~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~-~~------------~~~L~~mQc~Wf~~e 310 (517)
T PF12569_consen 246 EAAEAMDEARELDL--ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV-DP------------LSNLNDMQCMWFETE 310 (517)
T ss_pred HHHHHHHHHHhCCh--hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC-Cc------------ccCHHHHHHHHHHHH
Confidence 66666665555555 4444444555555555555555555444432210 00 00000111233 34
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhh
Q 005499 553 LANLYSGLSHWKDVAICMGKAREL 576 (693)
Q Consensus 553 la~~~~~~~~~~~A~~~~~~al~~ 576 (693)
.|.+|.+.|++..|+..|..+.+.
T Consensus 311 ~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 311 CAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHH
Confidence 467777777777777777776654
No 88
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.59 E-value=1.6e-13 Score=131.61 Aligned_cols=192 Identities=15% Similarity=0.023 Sum_probs=136.0
Q ss_pred CCCChHHHHHH-----HhCCHHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchH-
Q 005499 423 ENNNADLFFDL-----EQRNLSTALRYAKQYIDATGGSVL--KGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGP- 494 (693)
Q Consensus 423 ~p~~~~~~~~l-----~~~~~~~A~~~~~~al~~~p~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~- 494 (693)
++..+..++.+ ..|++++|+..+++++...|+++. .+++.+|.++...|++++|+..++++++.+| +++.
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~ 106 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP--NHPDA 106 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc--CCCch
Confidence 44456666666 789999999999999999998751 4789999999999999999999999999999 5665
Q ss_pred --HHHHHHHHHHHh-CChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHH
Q 005499 495 --ILRLKAKLKIAQ-ALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMG 571 (693)
Q Consensus 495 --~~~~l~~~~~~~-g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 571 (693)
+++.+|.++... +....-...+.++++...... ...|.+...+ ++...+.
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~-------------~~~p~~~~~~--------------~a~~~~~ 159 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELI-------------RRYPNSEYAP--------------DAKKRMD 159 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH-------------HHCCCChhHH--------------HHHHHHH
Confidence 688888888765 121112233444444432221 2223222222 1111111
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCC
Q 005499 572 KARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSY---VPCKVLVGSLFSKLGPKALPVARSLLSDALRIEP 648 (693)
Q Consensus 572 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p 648 (693)
. ...........+|.++...|++.+|+..|++++...|+. +.++..+|.++..+|+++ +|..+++......|
T Consensus 160 ~---~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~--~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 160 Y---LRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKD--LAQDAAAVLGANYP 234 (235)
T ss_pred H---HHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhCC
Confidence 1 111112334678899999999999999999999987765 478999999999999999 99998887766655
No 89
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.58 E-value=1.7e-14 Score=124.97 Aligned_cols=116 Identities=15% Similarity=0.142 Sum_probs=110.3
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhh
Q 005499 567 AICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRI 646 (693)
Q Consensus 567 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~ 646 (693)
..+++++++++|++ ++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|+++ +|+..|++++++
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~--~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYT--TAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHH--HHHHHHHHHHhc
Confidence 46789999999875 6678999999999999999999999999999999999999999999999 999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCC
Q 005499 647 EPTNRKAWYYLGLVHKDDGRIADAADCFQAASMLEESDPIE 687 (693)
Q Consensus 647 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 687 (693)
+|+++.+++++|.++...|++++|+..|++++.+.|+++..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~ 128 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASW 128 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 99999999999999999999999999999999999998754
No 90
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=3.7e-12 Score=118.43 Aligned_cols=373 Identities=14% Similarity=0.011 Sum_probs=205.2
Q ss_pred ccCCChhHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHCCCc
Q 005499 243 YAPKNNLEEAILLLLILMKKYHLGKIKWDPAVMEHLTYALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQN 322 (693)
Q Consensus 243 ~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~ 322 (693)
|....+|+-|+.++.... -.+. .....+-..++..+++.|+|++|...|+-+...+..+.+.|.++|.|++-.|.|
T Consensus 32 fls~rDytGAislLefk~---~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKL---NLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHhcccchhHHHHHHHhh---ccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence 444567788887764331 1111 112345667889999999999999999998887777888999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCCh
Q 005499 323 DAALNLLRKSLHKHERPNDLMALLLAAKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSD 402 (693)
Q Consensus 323 ~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~ 402 (693)
.+|..+-.++ |+++....++-.+..+.++. +-+-.+.+.++.. ..-...++.+++....+
T Consensus 108 ~eA~~~~~ka------~k~pL~~RLlfhlahklndE--k~~~~fh~~LqD~--------~EdqLSLAsvhYmR~HY---- 167 (557)
T KOG3785|consen 108 IEAKSIAEKA------PKTPLCIRLLFHLAHKLNDE--KRILTFHSSLQDT--------LEDQLSLASVHYMRMHY---- 167 (557)
T ss_pred HHHHHHHhhC------CCChHHHHHHHHHHHHhCcH--HHHHHHHHHHhhh--------HHHHHhHHHHHHHHHHH----
Confidence 9998777665 44444444443344443332 3333344444311 23355566666666677
Q ss_pred HHHhHHHHHHHHHHHHHHhcCCCChHHHHHH-----HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHH
Q 005499 403 YERSRLQSEALKSLDGASTFENNNADLFFDL-----EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAE 477 (693)
Q Consensus 403 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-----~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~ 477 (693)
.+|++.|.+.+.-+|+....-.++ ...-++-+.+.+.-.+...|+++ -+....+..+++.=+-..|.
T Consensus 168 -------QeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSt-iA~NLkacn~fRl~ngr~ae 239 (557)
T KOG3785|consen 168 -------QEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDST-IAKNLKACNLFRLINGRTAE 239 (557)
T ss_pred -------HHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcH-HHHHHHHHHHhhhhccchhH
Confidence 888888888887776654322222 55666666666666677777776 66666665555443323333
Q ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHH
Q 005499 478 VVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLY 557 (693)
Q Consensus 478 ~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 557 (693)
.-.....+.... ..+.+-...-.-+.--.+-+.|++.+-..+..- +++..+++..|
T Consensus 240 ~E~k~ladN~~~-~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~I-----------------------PEARlNL~iYy 295 (557)
T KOG3785|consen 240 DEKKELADNIDQ-EYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHI-----------------------PEARLNLIIYY 295 (557)
T ss_pred HHHHHHHhcccc-cchhHHHHHHcCeEEEeCCccHHHhchHHHhhC-----------------------hHhhhhheeee
Confidence 222222211110 000000000000000011122222222222221 34445555555
Q ss_pred HhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC------------------------------------------
Q 005499 558 SGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCG------------------------------------------ 595 (693)
Q Consensus 558 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g------------------------------------------ 595 (693)
.++++..+|+.+.+. ++|..|.-+...|.+....|
T Consensus 296 L~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~ 372 (557)
T KOG3785|consen 296 LNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLS 372 (557)
T ss_pred cccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHH
Confidence 555555555544332 34444444444444444444
Q ss_pred -ChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCChHHHHHH
Q 005499 596 -QTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNR-KAWYYLGLVHKDDGRIADAADC 673 (693)
Q Consensus 596 -~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~ 673 (693)
++++-+.++...-...-++....++++.++...|++. +|++.|-+.-..+-.+. .....|+.+|...|..+-|.+.
T Consensus 373 ~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~--eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~ 450 (557)
T KOG3785|consen 373 FQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYV--EAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDM 450 (557)
T ss_pred HHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChH--HHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHH
Confidence 4444444444433334445556677777778888877 78777766543332222 2334577888888888877776
Q ss_pred HHH
Q 005499 674 FQA 676 (693)
Q Consensus 674 ~~~ 676 (693)
|-+
T Consensus 451 ~lk 453 (557)
T KOG3785|consen 451 MLK 453 (557)
T ss_pred HHh
Confidence 644
No 91
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.57 E-value=3.2e-12 Score=131.39 Aligned_cols=311 Identities=14% Similarity=0.012 Sum_probs=180.8
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCC---CcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHH
Q 005499 268 IKWDPAVMEHLTYALSLCSQTSILAKQLEEIMPGVF---LRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMA 344 (693)
Q Consensus 268 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~e~~l~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~ 344 (693)
.|+.+..+..++..+...|+++.+...+.++.+..+ +..+..+..+..+...|++++|...+++++. .+|++..+
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~--~~P~~~~a 79 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLD--DYPRDLLA 79 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHH
Confidence 367777888888888888888887777776654433 3455677778888889999999999999888 45888766
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHh-hcCCCcchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcC
Q 005499 345 LLLAAKICSEDCHLAAEGIQYARTALSN-AQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFE 423 (693)
Q Consensus 345 ~~~~a~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 423 (693)
+.. +..+...+... .+.....+++.. .+..... ..++..+|.++..+|++ ++|+..+++++..+
T Consensus 80 ~~~-~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~--~~~~~~~a~~~~~~G~~-----------~~A~~~~~~al~~~ 144 (355)
T cd05804 80 LKL-HLGAFGLGDFS-GMRDHVARVLPLWAPENPDY--WYLLGMLAFGLEEAGQY-----------DRAEEAARRALELN 144 (355)
T ss_pred HHH-hHHHHHhcccc-cCchhHHHHHhccCcCCCCc--HHHHHHHHHHHHHcCCH-----------HHHHHHHHHHHhhC
Confidence 554 33333333332 222333333322 1222222 55666777888888888 88888888888888
Q ss_pred CCChHHHHHH-----HhCCHHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHH
Q 005499 424 NNNADLFFDL-----EQRNLSTALRYAKQYIDATGGSV---LKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPI 495 (693)
Q Consensus 424 p~~~~~~~~l-----~~~~~~~A~~~~~~al~~~p~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 495 (693)
|+++.++..+ ..|++++|+.++++++...|.++ ...+..++.++...|++++|+..+++++...|.......
T Consensus 145 p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~ 224 (355)
T cd05804 145 PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALD 224 (355)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHH
Confidence 8776655555 66777777777777777665332 123456777777777777777777777654441011110
Q ss_pred HH---HHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHH
Q 005499 496 LR---LKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGK 572 (693)
Q Consensus 496 ~~---~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 572 (693)
.. .+...+...|....+.. ++.+....+... .. +.........+.++...|+.++|...++.
T Consensus 225 ~~~~~~~l~~~~~~g~~~~~~~-w~~~~~~~~~~~-------------~~-~~~~~~~~~~a~~~~~~~~~~~a~~~L~~ 289 (355)
T cd05804 225 LLDAASLLWRLELAGHVDVGDR-WEDLADYAAWHF-------------PD-HGLAFNDLHAALALAGAGDKDALDKLLAA 289 (355)
T ss_pred HhhHHHHHHHHHhcCCCChHHH-HHHHHHHHHhhc-------------Cc-ccchHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 10 11222222333222222 222222211110 00 01112223466666677777777777766
Q ss_pred HHhhCCC---------CHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 005499 573 ARELKAY---------SAEMLHTEGVMHEGCGQTHEALRAYINALLI 610 (693)
Q Consensus 573 al~~~p~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 610 (693)
+...... ........+.++...|++++|+..+..++..
T Consensus 290 l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 290 LKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5442211 2334555666667777777777777766654
No 92
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.57 E-value=7e-14 Score=127.97 Aligned_cols=124 Identities=15% Similarity=0.093 Sum_probs=117.8
Q ss_pred CCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHH-HHhCCC--ChHHH
Q 005499 560 LSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLF-SKLGPK--ALPVA 636 (693)
Q Consensus 560 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~~--~l~~A 636 (693)
.++.++++..+++++..+|+++..|..+|.++...|++++|+..|+++++++|+++.++..+|.++ ...|+. + +|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~--~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTP--QT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcH--HH
Confidence 677899999999999999999999999999999999999999999999999999999999999975 677874 6 99
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCC
Q 005499 637 RSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASMLEESDP 685 (693)
Q Consensus 637 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 685 (693)
...++++++.+|+++.+++.+|..++..|++++|+.+|++++++.|.+.
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 9999999999999999999999999999999999999999999988754
No 93
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.52 E-value=8.3e-11 Score=136.62 Aligned_cols=384 Identities=14% Similarity=-0.003 Sum_probs=272.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHHHHH
Q 005499 272 PAVMEHLTYALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLAAKI 351 (693)
Q Consensus 272 ~~~~~~l~~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~ 351 (693)
..++...+..+...|++..|......+-.. ..-.......+..+...|++..+...+..+-.. ....++......+.+
T Consensus 341 ~~lh~raa~~~~~~g~~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~-~~~~~~~l~~~~a~~ 418 (903)
T PRK04841 341 PELHRAAAEAWLAQGFPSEAIHHALAAGDA-QLLRDILLQHGWSLFNQGELSLLEECLNALPWE-VLLENPRLVLLQAWL 418 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHCCCH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHH-HHhcCcchHHHHHHH
Confidence 456777788888999999988877665321 111233445677788889998887777664211 012233344566667
Q ss_pred HHhcCCcHHHHHHHHHHHHHhhcCC----CcchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCCh
Q 005499 352 CSEDCHLAAEGIQYARTALSNAQGK----DEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNA 427 (693)
Q Consensus 352 ~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 427 (693)
+...++.. ++..++..+....+.. ...........++.++...|++ ++|...+++++...|...
T Consensus 419 ~~~~g~~~-~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~-----------~~A~~~~~~al~~~~~~~ 486 (903)
T PRK04841 419 AQSQHRYS-EVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDP-----------EEAERLAELALAELPLTW 486 (903)
T ss_pred HHHCCCHH-HHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCH-----------HHHHHHHHHHHhcCCCcc
Confidence 77777777 9999988887654321 1223456667788999999999 999999999987544432
Q ss_pred H-----HHHHH-----HhCCHHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCC--
Q 005499 428 D-----LFFDL-----EQRNLSTALRYAKQYIDATGGSV-----LKGWKLLALVLSAQQRFSEAEVVTDAALDETTKW-- 490 (693)
Q Consensus 428 ~-----~~~~l-----~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 490 (693)
. +...+ ..|++++|...+++++....... ..++..++.++...|++++|...+++++......
T Consensus 487 ~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~ 566 (903)
T PRK04841 487 YYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHL 566 (903)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc
Confidence 1 11111 78999999999999987643221 1356678999999999999999999998863310
Q ss_pred ----CchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHH
Q 005499 491 ----EQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDV 566 (693)
Q Consensus 491 ----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 566 (693)
.....+..++.++...|++++|...+.+++....... ......++..++.++...|++++|
T Consensus 567 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~---------------~~~~~~~~~~la~~~~~~G~~~~A 631 (903)
T PRK04841 567 EQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ---------------PQQQLQCLAMLAKISLARGDLDNA 631 (903)
T ss_pred ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC---------------chHHHHHHHHHHHHHHHcCCHHHH
Confidence 1123456788899999999999999999988754221 012356677799999999999999
Q ss_pred HHHHHHHHhhCCCC---HHHHH----HHHHHHHHCCChHHHHHHHHHHHhhCCCChh----HHHHHHHHHHHhCCCChHH
Q 005499 567 AICMGKARELKAYS---AEMLH----TEGVMHEGCGQTHEALRAYINALLIEPSYVP----CKVLVGSLFSKLGPKALPV 635 (693)
Q Consensus 567 ~~~~~~al~~~p~~---~~~~~----~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~l~~ 635 (693)
...+.++..+.+.. ..... .....+...|+.+.|..++.......+.... .+..++.++...|+++ +
T Consensus 632 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~--~ 709 (903)
T PRK04841 632 RRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFD--E 709 (903)
T ss_pred HHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHH--H
Confidence 99999997753321 11111 1234456689999999998776553322221 2567899999999998 9
Q ss_pred HHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCC
Q 005499 636 ARSLLSDALRIEP------TNRKAWYYLGLVHKDDGRIADAADCFQAASMLEESDPI 686 (693)
Q Consensus 636 A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 686 (693)
|...+++++.... ....++..+|.++...|+.++|...+.+|+++......
T Consensus 710 A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 710 AEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence 9999999987521 22357788999999999999999999999998765443
No 94
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=5.8e-12 Score=112.22 Aligned_cols=176 Identities=18% Similarity=0.127 Sum_probs=113.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccch
Q 005499 460 WKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQI 539 (693)
Q Consensus 460 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 539 (693)
+-....+....|+.+-|..++++.....| .+..+....|..+...|++++|+++|+..++.+|.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp--~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt-------------- 118 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFP--GSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPT-------------- 118 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCC--CChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcc--------------
Confidence 33444445556666667777766666666 56666666666666777777777777766666533
Q ss_pred hhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHH
Q 005499 540 EDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKV 619 (693)
Q Consensus 540 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 619 (693)
+..++....-+...+|+.-+|++.+...++.++.++++|..++.+|...|+|++|.-++++++-+.|.++..+.
T Consensus 119 ------~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~ 192 (289)
T KOG3060|consen 119 ------DTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQ 192 (289)
T ss_pred ------hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHH
Confidence 34555555555666666667777777777777777777777777777777777777777777766777666666
Q ss_pred HHHHHHHHhCCCC-hHHHHHHHHHHHhhCCCCHHHHHHH
Q 005499 620 LVGSLFSKLGPKA-LPVARSLLSDALRIEPTNRKAWYYL 657 (693)
Q Consensus 620 ~la~~~~~~g~~~-l~~A~~~~~~al~~~p~~~~~~~~l 657 (693)
.+|.+++-+|..+ +.-|+++|.++++++|.+..+++.+
T Consensus 193 rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 193 RLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHH
Confidence 6666666655432 3356667777777766666555543
No 95
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=2.3e-11 Score=110.68 Aligned_cols=389 Identities=14% Similarity=0.062 Sum_probs=266.2
Q ss_pred cCCChhHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHCCCcH
Q 005499 244 APKNNLEEAILLLLILMKKYHLGKIKWDPAVMEHLTYALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQND 323 (693)
Q Consensus 244 ~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~ 323 (693)
++..+|+.+|..+ .....+.|.+......||..|....++..|.++|++.-...|......+..|.++++.+.+.
T Consensus 21 I~d~ry~DaI~~l-----~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~A 95 (459)
T KOG4340|consen 21 IRDARYADAIQLL-----GSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYA 95 (459)
T ss_pred HHHhhHHHHHHHH-----HHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccH
Confidence 4566788888766 34455678888899999999999999999999999999988888888888999999999999
Q ss_pred HHHHHHHHHhhccCCCC-CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCCh
Q 005499 324 AALNLLRKSLHKHERPN-DLMALLLAAKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSD 402 (693)
Q Consensus 324 ~A~~~~~~~l~~~~~p~-~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~ 402 (693)
+|+.+...+... |. ....+-+-+.+.+..++.. .+... +...|+. ..+......|...++.|++
T Consensus 96 DALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~-g~rsL----veQlp~e---n~Ad~~in~gCllykegqy---- 160 (459)
T KOG4340|consen 96 DALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLP-GSRSL----VEQLPSE---NEADGQINLGCLLYKEGQY---- 160 (459)
T ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCc-chHHH----HHhccCC---CccchhccchheeeccccH----
Confidence 999999887762 33 3344555566777777776 54443 3444421 1267788999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHhcCCCChHHHHHH-----HhCCHHHHHHHHHHHHHhc----CCC----------------c-
Q 005499 403 YERSRLQSEALKSLDGASTFENNNADLFFDL-----EQRNLSTALRYAKQYIDAT----GGS----------------V- 456 (693)
Q Consensus 403 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-----~~~~~~~A~~~~~~al~~~----p~~----------------~- 456 (693)
+.|++-|+.+++...-++...+++ +.+++..|+++...+++.. |+. +
T Consensus 161 -------EaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~ 233 (459)
T KOG4340|consen 161 -------EAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTL 233 (459)
T ss_pred -------HHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchH
Confidence 999999999999988888777777 8999999999988887642 321 0
Q ss_pred -------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhh
Q 005499 457 -------LKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKS 529 (693)
Q Consensus 457 -------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 529 (693)
.+++...+.++++.|+++.|.+.+..+--.....-++..+.+++..- ..+++.+..+-++-.+.++| .|
T Consensus 234 ~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP-- 309 (459)
T KOG4340|consen 234 VLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FP-- 309 (459)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CC--
Confidence 13566777888899999988876644322111112344555555433 34667777788888888875 32
Q ss_pred cCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCH-----HHHHHHHHH-HHHCCChHHHHHH
Q 005499 530 FGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSA-----EMLHTEGVM-HEGCGQTHEALRA 603 (693)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~lg~~-~~~~g~~~~A~~~ 603 (693)
.+++-++-.+|++..-++-|..++-+ +|+.. ...+.+-.. -...-..++|.+-
T Consensus 310 -----------------~ETFANlLllyCKNeyf~lAADvLAE----n~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KK 368 (459)
T KOG4340|consen 310 -----------------PETFANLLLLYCKNEYFDLAADVLAE----NAHLTYKFLTPYLYDLLDALITCQTAPEEAFKK 368 (459)
T ss_pred -----------------hHHHHHHHHHHhhhHHHhHHHHHHhh----CcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHH
Confidence 67888888889988888888776543 33321 122222222 2233445555554
Q ss_pred HHHHHhhCCCChhHHHHHH-HHHHHhCCCC---hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 005499 604 YINALLIEPSYVPCKVLVG-SLFSKLGPKA---LPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASM 679 (693)
Q Consensus 604 ~~~al~~~p~~~~~~~~la-~~~~~~g~~~---l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 679 (693)
+...-.. ...-+..++ .+.....+.+ +..|++.|+++++.. -.+....+++|....+|..+...|.+..+
T Consensus 369 L~~La~~---l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 369 LDGLAGM---LTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 4433221 111111111 1111111111 234666666666653 34677889999999999999999999999
Q ss_pred cccCCCCCccc
Q 005499 680 LEESDPIESFS 690 (693)
Q Consensus 680 l~p~~~~~~~~ 690 (693)
...++.+.+..
T Consensus 443 fC~ehd~WkLN 453 (459)
T KOG4340|consen 443 FCNDHDVWKLN 453 (459)
T ss_pred hhcccceeeec
Confidence 88888776643
No 96
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.51 E-value=1.7e-10 Score=109.99 Aligned_cols=222 Identities=13% Similarity=0.024 Sum_probs=164.8
Q ss_pred HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHH--HHHHHH--HHHHhCCh
Q 005499 434 EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPI--LRLKAK--LKIAQALP 509 (693)
Q Consensus 434 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--~~~l~~--~~~~~g~~ 509 (693)
..|+++.|.....++++..|.++ .+......+|...|++.+...++.+.-+..-- .+... +...+. ++....+-
T Consensus 165 ~~~d~~aA~~~v~~ll~~~pr~~-~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l-~~~e~~~le~~a~~glL~q~~~~ 242 (400)
T COG3071 165 NRRDYPAARENVDQLLEMTPRHP-EVLRLALRAYIRLGAWQALLAILPKLRKAGLL-SDEEAARLEQQAWEGLLQQARDD 242 (400)
T ss_pred hCCCchhHHHHHHHHHHhCcCCh-HHHHHHHHHHHHhccHHHHHHHHHHHHHccCC-ChHHHHHHHHHHHHHHHHHHhcc
Confidence 56677777777777778888888 99999999999999999999999887664431 12221 111111 11122222
Q ss_pred hHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 005499 510 MDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGV 589 (693)
Q Consensus 510 ~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 589 (693)
..+.. +..-.+.-|... ..++.+...++.-+...|+.++|.++..++++..-+.. ....++
T Consensus 243 ~~~~g-L~~~W~~~pr~l----------------r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~- 303 (400)
T COG3071 243 NGSEG-LKTWWKNQPRKL----------------RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP- 303 (400)
T ss_pred ccchH-HHHHHHhccHHh----------------hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh-
Confidence 22211 222222222221 34467888889999999999999999999998764433 333333
Q ss_pred HHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHH
Q 005499 590 MHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIAD 669 (693)
Q Consensus 590 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 669 (693)
...-++...=++..++.++..|+++..+..||.++.+.+.+. +|..+|+.+++..|+ ...+..+|.++.+.|+..+
T Consensus 304 -~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~--kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~ 379 (400)
T COG3071 304 -RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWG--KASEALEAALKLRPS-ASDYAELADALDQLGEPEE 379 (400)
T ss_pred -hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHH--HHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHH
Confidence 245688889999999999999999999999999999999999 999999999998876 5678899999999999999
Q ss_pred HHHHHHHHHhc
Q 005499 670 AADCFQAASML 680 (693)
Q Consensus 670 A~~~~~~al~l 680 (693)
|.++++.++.+
T Consensus 380 A~~~r~e~L~~ 390 (400)
T COG3071 380 AEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHH
Confidence 99999999864
No 97
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.50 E-value=1.4e-09 Score=109.42 Aligned_cols=481 Identities=14% Similarity=0.155 Sum_probs=293.3
Q ss_pred HHHhHhhCChHHHHHHHHHHHHHHHHhhhcCCCChhhhhhHHHHHHHHHhhhHHHHhhcCCchHHHHHHHHHhcccCCCC
Q 005499 129 AKSLQKLGRLTEAANECKSVLDAVERIFQQGIPDAQVDNRLQETVSRAVELLPELWKQVGCDHDALAAYRRAVLSQWNLD 208 (693)
Q Consensus 129 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 208 (693)
...+.++|+...-...|..+|... |-.. .+++=+.+ .......|-+.-++..||+-|+..|
T Consensus 109 lq~l~~Q~~iT~tR~tfdrALraL--------pvtq-H~rIW~ly-------l~Fv~~~~lPets~rvyrRYLk~~P--- 169 (835)
T KOG2047|consen 109 LQFLIKQGLITRTRRTFDRALRAL--------PVTQ-HDRIWDLY-------LKFVESHGLPETSIRVYRRYLKVAP--- 169 (835)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhC--------chHh-hccchHHH-------HHHHHhCCChHHHHHHHHHHHhcCH---
Confidence 344556778888888887777632 2111 01111111 1123345667788888999888533
Q ss_pred hhHHHHHHHHHHHHhhhcccccCCCCCcCCCCCcccCCChhHHHHHHHHHHH--HHHhhcCCCCcHHHHHHHHHHHHhcC
Q 005499 209 NECCARIQKRFAVFLLHSGVEAGPPSLGSQVEGSYAPKNNLEEAILLLLILM--KKYHLGKIKWDPAVMEHLTYALSLCS 286 (693)
Q Consensus 209 ~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~p~~~~~~~~l~~~~~~~g 286 (693)
... .+.-++ ++..+...+|-.-+...+ ...+....|.+..++..++.......
T Consensus 170 -~~~----eeyie~--------------------L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p 224 (835)
T KOG2047|consen 170 -EAR----EEYIEY--------------------LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNP 224 (835)
T ss_pred -HHH----HHHHHH--------------------HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCc
Confidence 111 111111 122333333333222110 11122233455556666665554432
Q ss_pred CHHH---HHHHHHhhcCCCCC-cHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHH
Q 005499 287 QTSI---LAKQLEEIMPGVFL-RSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMA-LLLAAKICSEDCHLAAE 361 (693)
Q Consensus 287 ~~~~---a~~~~e~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~-~~~~a~~~~~~~~~~~~ 361 (693)
+.-. .-..+...+..-++ -..+|..||.-|.+.|.+++|..+|++++.....-.+..- +-..+. +.+.
T Consensus 225 ~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~-------FEE~ 297 (835)
T KOG2047|consen 225 DKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQ-------FEES 297 (835)
T ss_pred chhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHH-------HHHH
Confidence 2111 11223333333222 2458999999999999999999999999985422222221 111111 1101
Q ss_pred HHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHH-HHHhcCCCChHHHHHH---HhCC
Q 005499 362 GIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLD-GASTFENNNADLFFDL---EQRN 437 (693)
Q Consensus 362 A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~-~al~~~p~~~~~~~~l---~~~~ 437 (693)
.+..--. +......+.......-..++..-....+. . -++. -++..+|++...|... ..|+
T Consensus 298 ~~~~~me-~a~~~~~n~ed~~dl~~~~a~~e~lm~rr-----------~---~~lNsVlLRQn~~nV~eW~kRV~l~e~~ 362 (835)
T KOG2047|consen 298 CVAAKME-LADEESGNEEDDVDLELHMARFESLMNRR-----------P---LLLNSVLLRQNPHNVEEWHKRVKLYEGN 362 (835)
T ss_pred HHHHHHh-hhhhcccChhhhhhHHHHHHHHHHHHhcc-----------c---hHHHHHHHhcCCccHHHHHhhhhhhcCC
Confidence 1111111 11001111111111122222211111111 0 0111 2346789998888877 7888
Q ss_pred HHHHHHHHHHHHHh-cC----CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCC--CchHHHHHHHHHHHHhCChh
Q 005499 438 LSTALRYAKQYIDA-TG----GSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKW--EQGPILRLKAKLKIAQALPM 510 (693)
Q Consensus 438 ~~~A~~~~~~al~~-~p----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~l~~~~~~~g~~~ 510 (693)
..+-+..|..+++. +| +.+...|..+|..|...|+.+.|..+|+++....-+. +-..+|...|..-....+++
T Consensus 363 ~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~ 442 (835)
T KOG2047|consen 363 AAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFE 442 (835)
T ss_pred hHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHH
Confidence 99999999988763 44 3333679999999999999999999999998864310 23568889999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh--hcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 005499 511 DAIETYRYLLALVQAQRK--SFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEG 588 (693)
Q Consensus 511 ~A~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 588 (693)
.|+.+.+++... |..+. .+..... ....-.....+|..+++.....|-++.....|++.+.+.--.|....+.|
T Consensus 443 ~Al~lm~~A~~v-P~~~~~~~yd~~~p---vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyA 518 (835)
T KOG2047|consen 443 AALKLMRRATHV-PTNPELEYYDNSEP---VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYA 518 (835)
T ss_pred HHHHHHHhhhcC-CCchhhhhhcCCCc---HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999998765 33322 0111000 01111233688999999999999999999999999999988999999999
Q ss_pred HHHHHCCChHHHHHHHHHHHhhC--CCChhHHHHH-HHHHHHhCCCChHHHHHHHHHHHhhCCCC-H-HHHHHHHHHHHH
Q 005499 589 VMHEGCGQTHEALRAYINALLIE--PSYVPCKVLV-GSLFSKLGPKALPVARSLLSDALRIEPTN-R-KAWYYLGLVHKD 663 (693)
Q Consensus 589 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l-a~~~~~~g~~~l~~A~~~~~~al~~~p~~-~-~~~~~lg~~~~~ 663 (693)
..+....-++++.+.|++.+.+. |.-.+.|+.. ...-.+.|...++.|+.+|+++++..|.. . ..+...+..-..
T Consensus 519 mfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe 598 (835)
T KOG2047|consen 519 MFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEE 598 (835)
T ss_pred HHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999986 4445666543 33334566666779999999999987742 2 344556777778
Q ss_pred cCChHHHHHHHHHHHh
Q 005499 664 DGRIADAADCFQAASM 679 (693)
Q Consensus 664 ~g~~~~A~~~~~~al~ 679 (693)
-|....|+..|++|-.
T Consensus 599 ~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 599 HGLARHAMSIYERATS 614 (835)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 8888899999888755
No 98
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.49 E-value=2.3e-12 Score=138.70 Aligned_cols=138 Identities=10% Similarity=-0.078 Sum_probs=132.7
Q ss_pred ccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHH
Q 005499 544 VNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGS 623 (693)
Q Consensus 544 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 623 (693)
+.++.++..||.+....|.+++|..+++.++++.|++..++..++.++.+.+++++|...+++++..+|++..+++.+|.
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~ 162 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK 162 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 55689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccC
Q 005499 624 LFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASMLEES 683 (693)
Q Consensus 624 ~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 683 (693)
++.++|+++ +|+.+|++++..+|+++.+|..+|.++...|+.++|...|++|++...+
T Consensus 163 ~l~~~g~~~--~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 163 SWDEIGQSE--QADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred HHHHhcchH--HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 999999999 9999999999999999999999999999999999999999999987543
No 99
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.49 E-value=2.8e-12 Score=121.53 Aligned_cols=316 Identities=15% Similarity=0.101 Sum_probs=200.2
Q ss_pred ccCCChhHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHhcCCHHHHHHH------HHhhcCCCCCcHHHHHHHHHHH
Q 005499 243 YAPKNNLEEAILLLLILMKKYHLGKIKWDPAVMEHLTYALSLCSQTSILAKQ------LEEIMPGVFLRSDRWNALALCY 316 (693)
Q Consensus 243 ~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~------~e~~l~~~~~~~~~~~~la~~~ 316 (693)
.|+.|+++..+.+|...+..... ....-..+|..||.+|+-.++|++|.++ +.+.+.....++...-++|..+
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 45555555555555433221110 0001123555556666666666655553 2233322223333444555555
Q ss_pred HHCCCcHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhh
Q 005499 317 SAIGQNDAALNLLRKSLHKHERPNDLMALLLAAKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHA 396 (693)
Q Consensus 317 ~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~ 396 (693)
--.|.|++|+.++.+-+.. |.++-. ....+++++.+|.+|...|
T Consensus 106 Kv~G~fdeA~~cc~rhLd~--------------------------areLgD----------rv~e~RAlYNlgnvYhakG 149 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDF--------------------------ARELGD----------RVLESRALYNLGNVYHAKG 149 (639)
T ss_pred hhhcccchHHHHHHHHhHH--------------------------HHHHhH----------HHhhhHHHhhhhhhhhhcc
Confidence 5555555555555554441 111111 1233889999999999999
Q ss_pred cccCC--hHHHhHHHHHHHHHHHHHHhcCCCChHHHHHHHhCCHHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHH
Q 005499 397 KVSSS--DYERSRLQSEALKSLDGASTFENNNADLFFDLEQRNLSTALRYAKQYIDATG------GSVLKGWKLLALVLS 468 (693)
Q Consensus 397 ~~~~~--~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~A~~~~~~al~~~p------~~~~~~~~~la~~~~ 468 (693)
+.... +.++..+.+++...|+.|+ ++|..-+++.. ... .++-.+|..|+
T Consensus 150 k~~g~~~pee~g~f~~ev~~al~~Av----------------------~fy~eNL~l~~~lgDr~aqG-Ra~GnLGNTyY 206 (639)
T KOG1130|consen 150 KCTGLEAPEEKGAFNAEVTSALENAV----------------------KFYMENLELSEKLGDRLAQG-RAYGNLGNTYY 206 (639)
T ss_pred cccCCCChhhcccccHHHHHHHHHHH----------------------HHHHHHHHHHHHhhhHHhhc-chhcccCceee
Confidence 86322 2334444455555555444 33333333221 112 56778899999
Q ss_pred HcCChHHHHHHHHHHHhhcCCCC----chHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcc
Q 005499 469 AQQRFSEAEVVTDAALDETTKWE----QGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKV 544 (693)
Q Consensus 469 ~~g~~~~A~~~~~~al~~~p~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 544 (693)
-.|+|+.|+..-+.-+.+...+. .-.++.++|.++.-.|+++.|+++|+..+.+.-.. ....
T Consensus 207 lLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAiel--------------g~r~ 272 (639)
T KOG1130|consen 207 LLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIEL--------------GNRT 272 (639)
T ss_pred eeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHh--------------cchh
Confidence 99999999998887776644221 23568899999999999999999999998775433 2334
Q ss_pred cHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----CC
Q 005499 545 NEFQVWHGLANLYSGLSHWKDVAICMGKARELKA------YSAEMLHTEGVMHEGCGQTHEALRAYINALLIE-----PS 613 (693)
Q Consensus 545 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~ 613 (693)
..+...+.+|..|.-..++++|+.++++-+.+.. ....+++.+|..+...|..++|+.+.+..+++. |.
T Consensus 273 vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~s 352 (639)
T KOG1130|consen 273 VEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTS 352 (639)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcc
Confidence 5578889999999999999999999998877642 345688999999999999999999888887652 22
Q ss_pred -ChhHHHHHHHHHHHhCCCC
Q 005499 614 -YVPCKVLVGSLFSKLGPKA 632 (693)
Q Consensus 614 -~~~~~~~la~~~~~~g~~~ 632 (693)
...+..++...-..+|..+
T Consensus 353 gelTar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 353 GELTARDNLSDLILELGQED 372 (639)
T ss_pred hhhhhhhhhHHHHHHhCCCc
Confidence 3356777888877888765
No 100
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.48 E-value=1e-08 Score=103.25 Aligned_cols=554 Identities=15% Similarity=0.115 Sum_probs=276.5
Q ss_pred HHHHHHhhhcc--CCCHHHHHHHHHHHHhhcCCHHHHHhhhccCCcchhhhhcc----ccchhhhhhhccCCCCCCCccc
Q 005499 40 QEAESSLREGL--SLNFEEARALLGRLEYQRGNVEGALRVFDGIDLHAAIQRLQ----PSFSEKSASKKCRSRSDSHVSV 113 (693)
Q Consensus 40 ~~A~~~~~~~l--~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 113 (693)
+.-...|+.++ --.-+-.+...+.....||+...-.+.|+++.-. +..+.. +.+.+-...... . +.....
T Consensus 85 ~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALra-LpvtqH~rIW~lyl~Fv~~~~l-P--ets~rv 160 (835)
T KOG2047|consen 85 ESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRA-LPVTQHDRIWDLYLKFVESHGL-P--ETSIRV 160 (835)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHh-CchHhhccchHHHHHHHHhCCC-h--HHHHHH
Confidence 33344555555 1133466777788888888888888888875211 000000 001100000000 0 000000
Q ss_pred hhhHHHHHHHHHHHHHHHhHhhCChHHHHHHHHHHHHHHHHhhhc----------------CCCChhhh-----------
Q 005499 114 SQHAASLVLEAIYLKAKSLQKLGRLTEAANECKSVLDAVERIFQQ----------------GIPDAQVD----------- 166 (693)
Q Consensus 114 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~----------------~~~~~~~~----------- 166 (693)
..+.+...+++.-.--..+.+.++.++|.+.+..++....-.... ..|+....
T Consensus 161 yrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi 240 (835)
T KOG2047|consen 161 YRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGI 240 (835)
T ss_pred HHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhc
Confidence 011111223333333567788899999999988776443222211 11111100
Q ss_pred hhHHHHHHHHHhhhHHHHhhcCCchHHHHHHHHHhcccCCCChhHHHHHHHHHHHHhhhcccccCCCCCcCCCCCcccCC
Q 005499 167 NRLQETVSRAVELLPELWKQVGCDHDALAAYRRAVLSQWNLDNECCARIQKRFAVFLLHSGVEAGPPSLGSQVEGSYAPK 246 (693)
Q Consensus 167 ~~~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 246 (693)
....+-+...+.+|+..|.+.|.++.|...|++++..-. ....|..+-..++.+
T Consensus 241 ~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~F------------------------ 294 (835)
T KOG2047|consen 241 RRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQF------------------------ 294 (835)
T ss_pred ccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHH------------------------
Confidence 011233455677889999999999999999999987521 222222221111111
Q ss_pred ChhHHHHHHHHHHHHHHhhcCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHCCCcHHH
Q 005499 247 NNLEEAILLLLILMKKYHLGKIKW-DPAVMEHLTYALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDAA 325 (693)
Q Consensus 247 ~~~~~a~~~~~~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A 325 (693)
|+......... ....+.++. +..+-..++..-.........+. .-++..+|.+.+.|..... +..|+..+-
T Consensus 295 ---EE~~~~~~me~-a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lN--sVlLRQn~~nV~eW~kRV~--l~e~~~~~~ 366 (835)
T KOG2047|consen 295 ---EESCVAAKMEL-ADEESGNEEDDVDLELHMARFESLMNRRPLLLN--SVLLRQNPHNVEEWHKRVK--LYEGNAAEQ 366 (835)
T ss_pred ---HHHHHHHHHhh-hhhcccChhhhhhHHHHHHHHHHHHhccchHHH--HHHHhcCCccHHHHHhhhh--hhcCChHHH
Confidence 11111000000 000001111 11111111111000000000000 1134566777777766544 346778888
Q ss_pred HHHHHHHhhccCCCCC-----HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccC
Q 005499 326 LNLLRKSLHKHERPND-----LMALLLAAKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSS 400 (693)
Q Consensus 326 ~~~~~~~l~~~~~p~~-----~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~ 400 (693)
+..|.++++. .+|.. ...+...|+++-..++.. .|...++++.+..-.. -...+..|...|..-....++
T Consensus 367 i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~-~aRvifeka~~V~y~~-v~dLa~vw~~waemElrh~~~-- 441 (835)
T KOG2047|consen 367 INTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLD-DARVIFEKATKVPYKT-VEDLAEVWCAWAEMELRHENF-- 441 (835)
T ss_pred HHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHH-HHHHHHHHhhcCCccc-hHHHHHHHHHHHHHHHhhhhH--
Confidence 8888888876 46652 234556677777777776 8888888877743211 122366777777777777777
Q ss_pred ChHHHhHHHHHHHHHHHHHHhcCCCChHHHHHHHhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q 005499 401 SDYERSRLQSEALKSLDGASTFENNNADLFFDLEQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVT 480 (693)
Q Consensus 401 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~ 480 (693)
+.|+.+.++|... |..+. ......+...++.- -.+. ..|...+++....|-++.-...|
T Consensus 442 ---------~~Al~lm~~A~~v-P~~~~-~~~yd~~~pvQ~rl---------hrSl-kiWs~y~DleEs~gtfestk~vY 500 (835)
T KOG2047|consen 442 ---------EAALKLMRRATHV-PTNPE-LEYYDNSEPVQARL---------HRSL-KIWSMYADLEESLGTFESTKAVY 500 (835)
T ss_pred ---------HHHHHHHHhhhcC-CCchh-hhhhcCCCcHHHHH---------HHhH-HHHHHHHHHHHHhccHHHHHHHH
Confidence 8888888888754 33322 00001111111100 0112 55666666666666666666666
Q ss_pred HHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHH---H
Q 005499 481 DAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANL---Y 557 (693)
Q Consensus 481 ~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~---~ 557 (693)
++.+++.- ..+.+..+.|..+....-++++.+.|++.+.+.+ .|...++|...-.. -
T Consensus 501 driidLri--aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk------------------~p~v~diW~tYLtkfi~r 560 (835)
T KOG2047|consen 501 DRIIDLRI--ATPQIIINYAMFLEEHKYFEESFKAYERGISLFK------------------WPNVYDIWNTYLTKFIKR 560 (835)
T ss_pred HHHHHHhc--CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC------------------CccHHHHHHHHHHHHHHH
Confidence 66666655 4556666666666666666666666666666541 13334444433222 2
Q ss_pred HhCCChHHHHHHHHHHHhhCCCC-H-HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC-ChhHHHH--HHHHHHHhCCCC
Q 005499 558 SGLSHWKDVAICMGKARELKAYS-A-EMLHTEGVMHEGCGQTHEALRAYINALLIEPS-YVPCKVL--VGSLFSKLGPKA 632 (693)
Q Consensus 558 ~~~~~~~~A~~~~~~al~~~p~~-~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~--la~~~~~~g~~~ 632 (693)
..-...+.|..+|+++++..|.. . ..+...+.+...-|--..|+..|+++-..-+. ..-.+++ +..+-.-.|- .
T Consensus 561 ygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv-~ 639 (835)
T KOG2047|consen 561 YGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGV-P 639 (835)
T ss_pred hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCC-c
Confidence 22335666667777776665522 1 23444555555666666666666665432211 1111111 1111111232 1
Q ss_pred hHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 005499 633 LPVARSLLSDALRIEPTNR--KAWYYLGLVHKDDGRIADAADCFQAASML 680 (693)
Q Consensus 633 l~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~l 680 (693)
.-+..|+++++.-|+.. ......+..-...|..+.|...|.-+-++
T Consensus 640 --~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 640 --RTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred --ccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 45566666666666543 23334566666666666666666666554
No 101
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.47 E-value=5.2e-12 Score=113.95 Aligned_cols=173 Identities=14% Similarity=0.094 Sum_probs=87.3
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 005499 441 ALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLL 520 (693)
Q Consensus 441 A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 520 (693)
+...+-+....+|++. .+ ..++..+...|+-+.+..+..++...+| .+..++..+|......|++.+|+..++++.
T Consensus 52 a~~al~~~~~~~p~d~-~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~--~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~ 127 (257)
T COG5010 52 AAAALGAAVLRNPEDL-SI-AKLATALYLRGDADSSLAVLQKSAIAYP--KDRELLAAQGKNQIRNGNFGEAVSVLRKAA 127 (257)
T ss_pred HHHHHHHHHhcCcchH-HH-HHHHHHHHhcccccchHHHHhhhhccCc--ccHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 3333444444455554 44 4555555555555555555555444444 344444445555555555555555555555
Q ss_pred HHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHH
Q 005499 521 ALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEA 600 (693)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 600 (693)
... |.++++|+.+|-+|.+.|++++|...|.+++++.|.++.+..++|..+.-.|+++.|
T Consensus 128 ~l~--------------------p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A 187 (257)
T COG5010 128 RLA--------------------PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDA 187 (257)
T ss_pred ccC--------------------CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHH
Confidence 444 223455555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHH
Q 005499 601 LRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSL 639 (693)
Q Consensus 601 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~ 639 (693)
..++..+....+.+..+..+++.+....|+++ +|...
T Consensus 188 ~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~--~A~~i 224 (257)
T COG5010 188 ETLLLPAYLSPAADSRVRQNLALVVGLQGDFR--EAEDI 224 (257)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHhhcCChH--HHHhh
Confidence 55555555444445555555555555555544 44443
No 102
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.47 E-value=7.4e-13 Score=114.77 Aligned_cols=117 Identities=13% Similarity=0.068 Sum_probs=111.0
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhC
Q 005499 568 ICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIE 647 (693)
Q Consensus 568 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~ 647 (693)
..+++++..+|++....+.+|.++...|++++|+..+++++..+|.++.++..+|.++...|+++ +|...++++++.+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~--~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYE--EAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhcC
Confidence 46788999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCC
Q 005499 648 PTNRKAWYYLGLVHKDDGRIADAADCFQAASMLEESDPI 686 (693)
Q Consensus 648 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 686 (693)
|+++..++.+|.++...|++++|+..|+++++++|+++.
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 999999999999999999999999999999999998876
No 103
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.47 E-value=5.8e-12 Score=115.32 Aligned_cols=153 Identities=14% Similarity=0.123 Sum_probs=125.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhc
Q 005499 464 ALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDK 543 (693)
Q Consensus 464 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 543 (693)
+-.|...|+++......++... | .. -+...++.++++..++++++.+|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~--~--~~---------~~~~~~~~~~~i~~l~~~L~~~P~------------------ 71 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD--P--LH---------QFASQQTPEAQLQALQDKIRANPQ------------------ 71 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC--c--cc---------cccCchhHHHHHHHHHHHHHHCCC------------------
Confidence 4567888888887655533322 2 10 011256778899999999998844
Q ss_pred ccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHCCC--hHHHHHHHHHHHhhCCCChhHHHH
Q 005499 544 VNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMH-EGCGQ--THEALRAYINALLIEPSYVPCKVL 620 (693)
Q Consensus 544 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~g~--~~~A~~~~~~al~~~p~~~~~~~~ 620 (693)
+...|..+|.+|...|++++|+..|++++.+.|+++.++..+|.++ ...|+ +++|...++++++.+|+++.++..
T Consensus 72 --~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~ 149 (198)
T PRK10370 72 --NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALML 149 (198)
T ss_pred --CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHH
Confidence 4789999999999999999999999999999999999999999974 67777 599999999999999999999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHhhCCCCH
Q 005499 621 VGSLFSKLGPKALPVARSLLSDALRIEPTNR 651 (693)
Q Consensus 621 la~~~~~~g~~~l~~A~~~~~~al~~~p~~~ 651 (693)
+|..+.+.|+++ +|+..++++++..|.+.
T Consensus 150 LA~~~~~~g~~~--~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 150 LASDAFMQADYA--QAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHcCCHH--HHHHHHHHHHhhCCCCc
Confidence 999999999999 99999999999888754
No 104
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.46 E-value=8.7e-12 Score=127.10 Aligned_cols=209 Identities=17% Similarity=0.190 Sum_probs=177.7
Q ss_pred HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHH
Q 005499 434 EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAI 513 (693)
Q Consensus 434 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 513 (693)
..|-...|+..|++. ..|-....+|...|+..+|..+..+-++..| ++..|..+|.+.....-|++|.
T Consensus 410 slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek~~---d~~lyc~LGDv~~d~s~yEkaw 477 (777)
T KOG1128|consen 410 SLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEKDP---DPRLYCLLGDVLHDPSLYEKAW 477 (777)
T ss_pred HcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcCCC---cchhHHHhhhhccChHHHHHHH
Confidence 455555666666553 7777788899999999999999999888444 7777777777766655555555
Q ss_pred HHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 005499 514 ETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEG 593 (693)
Q Consensus 514 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 593 (693)
++.+..- ..+...+|......+++.++...++..++++|-....|+.+|.+..+
T Consensus 478 Elsn~~s--------------------------arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALq 531 (777)
T KOG1128|consen 478 ELSNYIS--------------------------ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQ 531 (777)
T ss_pred HHhhhhh--------------------------HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHH
Confidence 5444322 45666777777889999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 005499 594 CGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADC 673 (693)
Q Consensus 594 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 673 (693)
.++++.|..+|..++.++|++..+|++++..|.+.|+.. +|...+.++++.+-.+..+|-+.-.+....|.+++|++.
T Consensus 532 lek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~--ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A 609 (777)
T KOG1128|consen 532 LEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKK--RAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKA 609 (777)
T ss_pred HhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhH--HHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHH
Confidence 999999999999999999999999999999999999998 999999999999988899999999999999999999999
Q ss_pred HHHHHhccc
Q 005499 674 FQAASMLEE 682 (693)
Q Consensus 674 ~~~al~l~p 682 (693)
|.+.+.+..
T Consensus 610 ~~rll~~~~ 618 (777)
T KOG1128|consen 610 YHRLLDLRK 618 (777)
T ss_pred HHHHHHhhh
Confidence 999988643
No 105
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.46 E-value=1.2e-10 Score=104.01 Aligned_cols=172 Identities=20% Similarity=0.226 Sum_probs=157.5
Q ss_pred HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHH
Q 005499 434 EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAI 513 (693)
Q Consensus 434 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 513 (693)
..|+.+-|..++++.....|++. .+....|..+...|++++|+++|+..++.+| .+..++-...-+...+|+.-+|+
T Consensus 64 d~~~~~lAq~C~~~L~~~fp~S~-RV~~lkam~lEa~~~~~~A~e~y~~lL~ddp--t~~v~~KRKlAilka~GK~l~aI 140 (289)
T KOG3060|consen 64 DTGRDDLAQKCINQLRDRFPGSK-RVGKLKAMLLEATGNYKEAIEYYESLLEDDP--TDTVIRKRKLAILKAQGKNLEAI 140 (289)
T ss_pred HhcchHHHHHHHHHHHHhCCCCh-hHHHHHHHHHHHhhchhhHHHHHHHHhccCc--chhHHHHHHHHHHHHcCCcHHHH
Confidence 78999999999999998889999 9999999999999999999999999999999 78888989999999999999999
Q ss_pred HHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 005499 514 ETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEG 593 (693)
Q Consensus 514 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 593 (693)
+.+...++.++.+ .++|..++.+|+..|++++|.-|+++++-+.|.++..+..+|.+++-
T Consensus 141 k~ln~YL~~F~~D--------------------~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt 200 (289)
T KOG3060|consen 141 KELNEYLDKFMND--------------------QEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYT 200 (289)
T ss_pred HHHHHHHHHhcCc--------------------HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 9999999998544 79999999999999999999999999999999999999999999888
Q ss_pred CCC---hHHHHHHHHHHHhhCCCChhHHHHHHHHHHHh
Q 005499 594 CGQ---THEALRAYINALLIEPSYVPCKVLVGSLFSKL 628 (693)
Q Consensus 594 ~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 628 (693)
+|- ++-|.++|.++++++|.+..+++.+-.+....
T Consensus 201 ~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~l 238 (289)
T KOG3060|consen 201 QGGAENLELARKYYERALKLNPKNLRALFGIYLCGSAL 238 (289)
T ss_pred HhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHH
Confidence 774 67899999999999998888887766554443
No 106
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=1.3e-10 Score=105.86 Aligned_cols=299 Identities=12% Similarity=0.022 Sum_probs=189.6
Q ss_pred cCCcCHHHHHHHhhhcc--CCCHHHHHHHHHHHHhhcCCHHHHHhhhccCCcchhhhhccccchhhhhhhccCCCCCCCc
Q 005499 34 LDEGNIQEAESSLREGL--SLNFEEARALLGRLEYQRGNVEGALRVFDGIDLHAAIQRLQPSFSEKSASKKCRSRSDSHV 111 (693)
Q Consensus 34 ~~~g~~~~A~~~~~~~l--~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (693)
+..-+|+.|+..+..-. +|.+-.+..+||.+||...+|..|..+|+++.- +.|+
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~---------------------- 76 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPE---------------------- 76 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChH----------------------
Confidence 55567778877777666 455566677888888888888888888877421 1111
Q ss_pred cchhhHHHHHHHHHHHHHHHhHhhCChHHHHHHHHHHHHHHHHhhhcCCCChhhhhhHHHHHHHHHhhhHHHHhhcCCch
Q 005499 112 SVSQHAASLVLEAIYLKAKSLQKLGRLTEAANECKSVLDAVERIFQQGIPDAQVDNRLQETVSRAVELLPELWKQVGCDH 191 (693)
Q Consensus 112 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~ 191 (693)
..+..+..+.++++-+.+..|......+.+. .+..++.+..-+.|-.+.+++.
T Consensus 77 ---------~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~------------------~~L~~~~lqLqaAIkYse~Dl~ 129 (459)
T KOG4340|consen 77 ---------LEQYRLYQAQSLYKACIYADALRVAFLLLDN------------------PALHSRVLQLQAAIKYSEGDLP 129 (459)
T ss_pred ---------HHHHHHHHHHHHHHhcccHHHHHHHHHhcCC------------------HHHHHHHHHHHHHHhcccccCc
Confidence 1133455677777888888887665554331 1122233333223333333332
Q ss_pred HHHHHHHHHhcccCCCChhHHHHHHHHHHHHhhhcccccCCCCCcCCCCCcccCCChhHHHHHHHHHHHHHHhhcCCC--
Q 005499 192 DALAAYRRAVLSQWNLDNECCARIQKRFAVFLLHSGVEAGPPSLGSQVEGSYAPKNNLEEAILLLLILMKKYHLGKIK-- 269 (693)
Q Consensus 192 ~A~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~p-- 269 (693)
.+....+ ..|
T Consensus 130 g~rsLve--------------------------------------------------------------------Qlp~e 141 (459)
T KOG4340|consen 130 GSRSLVE--------------------------------------------------------------------QLPSE 141 (459)
T ss_pred chHHHHH--------------------------------------------------------------------hccCC
Confidence 2211111 112
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHHH
Q 005499 270 WDPAVMEHLTYALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLAA 349 (693)
Q Consensus 270 ~~~~~~~~l~~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a 349 (693)
+++......|-..++.|+++.|++-|..++....-.+-+-|++|.++++.|++..|++...+++..+. .+++..-+.+-
T Consensus 142 n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~-r~HPElgIGm~ 220 (459)
T KOG4340|consen 142 NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGI-RQHPELGIGMT 220 (459)
T ss_pred CccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhh-hcCCccCccce
Confidence 34445555666778899999999999999988777888899999999999999999999999988652 12222111000
Q ss_pred H---HHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCC-
Q 005499 350 K---ICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENN- 425 (693)
Q Consensus 350 ~---~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~- 425 (693)
. -...-++.. ... ..-...++++.+.++++.+++ +.|.+.+..+ .|.
T Consensus 221 tegiDvrsvgNt~----~lh-----------~Sal~eAfNLKaAIeyq~~n~-----------eAA~eaLtDm---PPRa 271 (459)
T KOG4340|consen 221 TEGIDVRSVGNTL----VLH-----------QSALVEAFNLKAAIEYQLRNY-----------EAAQEALTDM---PPRA 271 (459)
T ss_pred eccCchhcccchH----HHH-----------HHHHHHHhhhhhhhhhhcccH-----------HHHHHHhhcC---CCcc
Confidence 0 000001111 001 112256677778888888999 8887766543 332
Q ss_pred ----ChHHHHHH----HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 005499 426 ----NADLFFDL----EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDA 482 (693)
Q Consensus 426 ----~~~~~~~l----~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 482 (693)
+|.++.++ ..+++.....-++-.+.++|-.. +.+-++-.+|++..-|+-|-+++-+
T Consensus 272 E~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPfP~-ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 272 EEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPFPP-ETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred cccCCchhhhHHHHhcccCCccccHHHHHHHHhcCCCCh-HHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 45555555 56778888888888999999666 9999999999998888888776543
No 107
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.44 E-value=1.2e-10 Score=120.95 Aligned_cols=135 Identities=18% Similarity=0.113 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q 005499 547 FQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFS 626 (693)
Q Consensus 547 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 626 (693)
..+++.++..|...|++++|+.++++++...|..++.++..|.++...|++.+|..+++.+-.+++.+.-.-...+..++
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 35668889999999999999999999999999999999999999999999999999999999999999888888999999
Q ss_pred HhCCCChHHHHHHHHHHHhhC--CCC-----HHHHHH--HHHHHHHcCChHHHHHHHHHHHhcccC
Q 005499 627 KLGPKALPVARSLLSDALRIE--PTN-----RKAWYY--LGLVHKDDGRIADAADCFQAASMLEES 683 (693)
Q Consensus 627 ~~g~~~l~~A~~~~~~al~~~--p~~-----~~~~~~--lg~~~~~~g~~~~A~~~~~~al~l~p~ 683 (693)
+.|+.+ +|.+.+..-.+.+ |.. .-.|+. .|.+|.+.|++..|+..|..+.+...+
T Consensus 274 Ra~~~e--~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~ 337 (517)
T PF12569_consen 274 RAGRIE--EAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDD 337 (517)
T ss_pred HCCCHH--HHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 999988 9999887765543 211 125654 699999999999999999988875443
No 108
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.44 E-value=1.3e-09 Score=104.09 Aligned_cols=292 Identities=15% Similarity=0.003 Sum_probs=214.9
Q ss_pred HHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHH
Q 005499 309 WNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLAAKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRML 388 (693)
Q Consensus 309 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 388 (693)
...-|..-+..|+|.+|.+...+..+.+ +.-...++..+...-+.++.. .+-.++.++-+..++.. .......
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~--e~p~l~~l~aA~AA~qrgd~~-~an~yL~eaae~~~~~~----l~v~ltr 159 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHG--EQPVLAYLLAAEAAQQRGDED-RANRYLAEAAELAGDDT----LAVELTR 159 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcC--cchHHHHHHHHHHHHhcccHH-HHHHHHHHHhccCCCch----HHHHHHH
Confidence 3444666677899999999998877743 555666666677777777777 88888888888644322 5567778
Q ss_pred HHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChHHHHHH-----HhCCHHHHHHHHHHHHHhcCCCcHHH--HH
Q 005499 389 GLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNADLFFDL-----EQRNLSTALRYAKQYIDATGGSVLKG--WK 461 (693)
Q Consensus 389 g~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-----~~~~~~~A~~~~~~al~~~p~~~~~~--~~ 461 (693)
+.....+|++ ..|.....+++...|.++.+..-. ..|++........+.-+..--+..+. +-
T Consensus 160 arlll~~~d~-----------~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le 228 (400)
T COG3071 160 ARLLLNRRDY-----------PAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLE 228 (400)
T ss_pred HHHHHhCCCc-----------hhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHH
Confidence 8888889999 999999999999999888776544 88888888888887766543332121 11
Q ss_pred HHHH--HHHHcCChHHHHH---HHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccc
Q 005499 462 LLAL--VLSAQQRFSEAEV---VTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCL 536 (693)
Q Consensus 462 ~la~--~~~~~g~~~~A~~---~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 536 (693)
..+. ++.+.++-..+.. +++..-..-. .++.+....+.-+..+|+.++|.+..+++++..-
T Consensus 229 ~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr--~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~------------ 294 (400)
T COG3071 229 QQAWEGLLQQARDDNGSEGLKTWWKNQPRKLR--NDPELVVAYAERLIRLGDHDEAQEIIEDALKRQW------------ 294 (400)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHhccHHhh--cChhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc------------
Confidence 1111 1222222222222 3333222222 4567888889999999999999999999998741
Q ss_pred cchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 005499 537 SQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVP 616 (693)
Q Consensus 537 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 616 (693)
+......+ -....+++..=++..++.++..|+++..+..+|.++.+.+.|.+|..+|+.+++..|+ ..
T Consensus 295 ---------D~~L~~~~--~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~ 362 (400)
T COG3071 295 ---------DPRLCRLI--PRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-AS 362 (400)
T ss_pred ---------ChhHHHHH--hhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hh
Confidence 12221111 2346788888999999999999999999999999999999999999999999998876 56
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHhh
Q 005499 617 CKVLVGSLFSKLGPKALPVARSLLSDALRI 646 (693)
Q Consensus 617 ~~~~la~~~~~~g~~~l~~A~~~~~~al~~ 646 (693)
.+..+|.++.++|+.. +|.+..++++..
T Consensus 363 ~~~~la~~~~~~g~~~--~A~~~r~e~L~~ 390 (400)
T COG3071 363 DYAELADALDQLGEPE--EAEQVRREALLL 390 (400)
T ss_pred hHHHHHHHHHHcCChH--HHHHHHHHHHHH
Confidence 7889999999999999 999999998853
No 109
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.43 E-value=1.1e-11 Score=111.96 Aligned_cols=176 Identities=18% Similarity=0.102 Sum_probs=150.4
Q ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHH
Q 005499 476 AEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLAN 555 (693)
Q Consensus 476 A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 555 (693)
+...+-+....+| .+..+ ..++..+...|+-+.+..+..++...+|.+ ......+|.
T Consensus 52 a~~al~~~~~~~p--~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d--------------------~~ll~~~gk 108 (257)
T COG5010 52 AAAALGAAVLRNP--EDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKD--------------------RELLAAQGK 108 (257)
T ss_pred HHHHHHHHHhcCc--chHHH-HHHHHHHHhcccccchHHHHhhhhccCccc--------------------HHHHHHHHH
Confidence 5566666677778 67777 888888999999888888888877666443 566667899
Q ss_pred HHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHH
Q 005499 556 LYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPV 635 (693)
Q Consensus 556 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~ 635 (693)
..+..|++.+|+..++++....|+++.+|..+|.+|.+.|++++|...|.+++++.|+.+.+..|+|..+.-.|+++ .
T Consensus 109 ~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~--~ 186 (257)
T COG5010 109 NQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLE--D 186 (257)
T ss_pred HHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHH--H
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988 9
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 005499 636 ARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQA 676 (693)
Q Consensus 636 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 676 (693)
|..++..+....+.+..+..+++.+....|++++|...-.+
T Consensus 187 A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 187 AETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 99999998888888888999999999999999988765543
No 110
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.42 E-value=3.6e-12 Score=117.15 Aligned_cols=120 Identities=18% Similarity=0.167 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q 005499 547 FQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFS 626 (693)
Q Consensus 547 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 626 (693)
++.+..-|.-+.+.++|.+|+..|.+|+.++|.++..+.+.+.+|.++|.++.|++.++.++.++|.+..+|..||.+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 45666778888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChH
Q 005499 627 KLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIA 668 (693)
Q Consensus 627 ~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 668 (693)
.+|++. +|++.|+++++++|++...+.+|.++-...+...
T Consensus 161 ~~gk~~--~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 161 ALGKYE--EAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ccCcHH--HHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999988 9999999999999999988888888887777655
No 111
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.41 E-value=9.2e-11 Score=127.11 Aligned_cols=269 Identities=11% Similarity=0.051 Sum_probs=185.9
Q ss_pred CCCCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCcch
Q 005499 301 GVFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLAAKICSEDCHLAAEGIQYARTALSNAQGKDEHL 380 (693)
Q Consensus 301 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 380 (693)
..|.+..+|..++..+...|++++|+.+++..+. ..|+...+++..|.++++.+...
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~--~~P~~i~~yy~~G~l~~q~~~~~--------------------- 82 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLK--EHKKSISALYISGILSLSRRPLN--------------------- 82 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCcceehHHHHHHHHHhhcchh---------------------
Confidence 4456677777777777777777777777777777 44777766666666555554433
Q ss_pred hHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChHHHHHHHhCCHHHHHHHHHHHHHhcCCCcHHHH
Q 005499 381 KGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNADLFFDLEQRNLSTALRYAKQYIDATGGSVLKGW 460 (693)
Q Consensus 381 ~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~A~~~~~~al~~~p~~~~~~~ 460 (693)
++... .++...+.+ .++ .++.++...+...+++. .++
T Consensus 83 ------------------------------~~~lv--~~l~~~~~~---------~~~-~~ve~~~~~i~~~~~~k-~Al 119 (906)
T PRK14720 83 ------------------------------DSNLL--NLIDSFSQN---------LKW-AIVEHICDKILLYGENK-LAL 119 (906)
T ss_pred ------------------------------hhhhh--hhhhhcccc---------cch-hHHHHHHHHHHhhhhhh-HHH
Confidence 22222 222222211 122 33444444444466776 899
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchh
Q 005499 461 KLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIE 540 (693)
Q Consensus 461 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 540 (693)
+.+|.+|.++|+.++|...++++++.+| +++.++..+|..+... +.++|++++.+++...
T Consensus 120 ~~LA~~Ydk~g~~~ka~~~yer~L~~D~--~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~----------------- 179 (906)
T PRK14720 120 RTLAEAYAKLNENKKLKGVWERLVKADR--DNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF----------------- 179 (906)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH-----------------
Confidence 9999999999999999999999999999 8999999999999999 9999999999998764
Q ss_pred hhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHH--------------------HHHHHHHHHHHCCChHHH
Q 005499 541 DDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAE--------------------MLHTEGVMHEGCGQTHEA 600 (693)
Q Consensus 541 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------------~~~~lg~~~~~~g~~~~A 600 (693)
...+++.++..++.+.+..+|++.+ .+.-+=..|...++|+++
T Consensus 180 -----------------i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~ 242 (906)
T PRK14720 180 -----------------IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEV 242 (906)
T ss_pred -----------------HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHH
Confidence 2333455555555555555555433 334444778888899999
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 005499 601 LRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASML 680 (693)
Q Consensus 601 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 680 (693)
+..++.+++.+|++..+...++.+|. +.|. . ...++..+++..- --....+..|+..|++-+..
T Consensus 243 i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~--~-~~~~ee~l~~s~l-----------~~~~~~~~~~i~~fek~i~f 306 (906)
T PRK14720 243 IYILKKILEHDNKNNKAREELIRFYK--EKYK--D-HSLLEDYLKMSDI-----------GNNRKPVKDCIADFEKNIVF 306 (906)
T ss_pred HHHHHHHHhcCCcchhhHHHHHHHHH--HHcc--C-cchHHHHHHHhcc-----------ccCCccHHHHHHHHHHHeee
Confidence 99999999999999999999999988 4444 2 4555555553210 00113567888888888888
Q ss_pred ccCCCCCc
Q 005499 681 EESDPIES 688 (693)
Q Consensus 681 ~p~~~~~~ 688 (693)
++.+-+.+
T Consensus 307 ~~G~yv~H 314 (906)
T PRK14720 307 DTGNFVYH 314 (906)
T ss_pred cCCCEEEE
Confidence 88776544
No 112
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.40 E-value=6.3e-10 Score=129.29 Aligned_cols=347 Identities=15% Similarity=0.059 Sum_probs=245.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCC-------CHHHHH
Q 005499 275 MEHLTYALSLCSQTSILAKQLEEIMPG-VFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPN-------DLMALL 346 (693)
Q Consensus 275 ~~~l~~~~~~~g~~~~a~~~~e~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~-------~~~~~~ 346 (693)
....+..+...|++..+...++.+... ...++......+..+...|++++|...+..+.......+ ......
T Consensus 377 l~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 456 (903)
T PRK04841 377 LLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNA 456 (903)
T ss_pred HHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHH
Confidence 344456677788888877777654211 123344556778888999999999999998865321111 123344
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCC
Q 005499 347 LAAKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNN 426 (693)
Q Consensus 347 ~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 426 (693)
..+.++...+++. +|..++++++...+.........+...+|.++...|++ ++|...+++++......
T Consensus 457 ~~a~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~-----------~~A~~~~~~al~~~~~~ 524 (903)
T PRK04841 457 LRAQVAINDGDPE-EAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL-----------ARALAMMQQTEQMARQH 524 (903)
T ss_pred HHHHHHHhCCCHH-HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH-----------HHHHHHHHHHHHHHhhh
Confidence 5667777888888 99999999998655433322356778899999999999 99999999998643321
Q ss_pred ----hH--HHHHH-----HhCCHHHHHHHHHHHHHhcCC-----Cc--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhcC
Q 005499 427 ----AD--LFFDL-----EQRNLSTALRYAKQYIDATGG-----SV--LKGWKLLALVLSAQQRFSEAEVVTDAALDETT 488 (693)
Q Consensus 427 ----~~--~~~~l-----~~~~~~~A~~~~~~al~~~p~-----~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 488 (693)
.. +...+ ..|+++.|...+++++..... .. ...+..+|.++...|++++|...+.+++....
T Consensus 525 g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~ 604 (903)
T PRK04841 525 DVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS 604 (903)
T ss_pred cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence 11 11121 789999999999999886321 11 13355788899999999999999999887533
Q ss_pred CC---CchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccH--HHHHHHHHHHHHhCCCh
Q 005499 489 KW---EQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNE--FQVWHGLANLYSGLSHW 563 (693)
Q Consensus 489 ~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~ 563 (693)
.. .....+..++.++...|++++|...+.++....+.... ... ..........+...|+.
T Consensus 605 ~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~g~~ 669 (903)
T PRK04841 605 NYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRY---------------HSDWIANADKVRLIYWQMTGDK 669 (903)
T ss_pred ccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccc---------------cHhHhhHHHHHHHHHHHHCCCH
Confidence 10 13445667899999999999999999999887533210 000 01111122445568999
Q ss_pred HHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHCCChHHHHHHHHHHHhhCC------CChhHHHHHHHHHHHhCCCCh
Q 005499 564 KDVAICMGKARELKAYSAE----MLHTEGVMHEGCGQTHEALRAYINALLIEP------SYVPCKVLVGSLFSKLGPKAL 633 (693)
Q Consensus 564 ~~A~~~~~~al~~~p~~~~----~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~l 633 (693)
+.|..++.......+.... .+..++.++...|++++|...+++++.... ....++..+|.++...|+.+
T Consensus 670 ~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~- 748 (903)
T PRK04841 670 EAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKS- 748 (903)
T ss_pred HHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHH-
Confidence 9999998776653322221 256789999999999999999999987532 22457888999999999999
Q ss_pred HHHHHHHHHHHhhCCCC
Q 005499 634 PVARSLLSDALRIEPTN 650 (693)
Q Consensus 634 ~~A~~~~~~al~~~p~~ 650 (693)
+|...+.+++++....
T Consensus 749 -~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 749 -EAQRVLLEALKLANRT 764 (903)
T ss_pred -HHHHHHHHHHHHhCcc
Confidence 9999999999976543
No 113
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.39 E-value=2.7e-11 Score=130.54 Aligned_cols=148 Identities=11% Similarity=-0.005 Sum_probs=117.9
Q ss_pred HHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCC
Q 005499 482 AALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLS 561 (693)
Q Consensus 482 ~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 561 (693)
.....+| .+..++..+|.+....|++++|...++.+++..|+ +..++..++.++.+.+
T Consensus 77 ~~~~~~~--~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd--------------------~~~a~~~~a~~L~~~~ 134 (694)
T PRK15179 77 DYVRRYP--HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD--------------------SSEAFILMLRGVKRQQ 134 (694)
T ss_pred HHHHhcc--ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC--------------------cHHHHHHHHHHHHHhc
Confidence 3344566 66788888888888888888888888888888744 4678888888888888
Q ss_pred ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHH
Q 005499 562 HWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLS 641 (693)
Q Consensus 562 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~ 641 (693)
++++|+..+++++...|+++..++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|+.+ +|...|+
T Consensus 135 ~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~--~A~~~~~ 212 (694)
T PRK15179 135 GIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALW--RARDVLQ 212 (694)
T ss_pred cHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH--HHHHHHH
Confidence 88888888888888888888888888888888888888888888888878888888888888888888877 8888888
Q ss_pred HHHhhCCCCHHH
Q 005499 642 DALRIEPTNRKA 653 (693)
Q Consensus 642 ~al~~~p~~~~~ 653 (693)
++++...+-...
T Consensus 213 ~a~~~~~~~~~~ 224 (694)
T PRK15179 213 AGLDAIGDGARK 224 (694)
T ss_pred HHHHhhCcchHH
Confidence 888766554444
No 114
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.39 E-value=6.1e-12 Score=119.28 Aligned_cols=275 Identities=15% Similarity=0.085 Sum_probs=201.0
Q ss_pred HHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChHHHHHH---------HhCCHHHHHHHHHHHHHh----
Q 005499 385 LRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNADLFFDL---------EQRNLSTALRYAKQYIDA---- 451 (693)
Q Consensus 385 ~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l---------~~~~~~~A~~~~~~al~~---- 451 (693)
+..-|.-+++.|+. ...+..|+.|++...++...+..+ ..++|++|+++-.-=+.+
T Consensus 20 LalEGERLck~gdc-----------raGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~l 88 (639)
T KOG1130|consen 20 LALEGERLCKMGDC-----------RAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLL 88 (639)
T ss_pred HHHHHHHHHhccch-----------hhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHh
Confidence 34456778888999 999999999999988887665555 677788888765433322
Q ss_pred --cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcC----CCCchHHHHHHHHHHHHhCC-------------hhHH
Q 005499 452 --TGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETT----KWEQGPILRLKAKLKIAQAL-------------PMDA 512 (693)
Q Consensus 452 --~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~~~l~~~~~~~g~-------------~~~A 512 (693)
.-... .+--++|.++-..|.|++|+.++.+-+.... ......+++++|.+|...|+ .+++
T Consensus 89 gdklGEA-KssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev 167 (639)
T KOG1130|consen 89 GDKLGEA-KSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEV 167 (639)
T ss_pred cchhccc-cccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHH
Confidence 11223 4566889999999999999999988776532 11345689999999998774 2334
Q ss_pred HHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCC------HHHHHH
Q 005499 513 IETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYS------AEMLHT 586 (693)
Q Consensus 513 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~ 586 (693)
...++.+++.+..+..... ...+......++-++|..|+-+|+|+.|+..-+.-+.+.... -.++.+
T Consensus 168 ~~al~~Av~fy~eNL~l~~-------~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sN 240 (639)
T KOG1130|consen 168 TSALENAVKFYMENLELSE-------KLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSN 240 (639)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcc
Confidence 4444444443322211100 012223345788899999999999999999988777664332 347889
Q ss_pred HHHHHHHCCChHHHHHHHHHHHhhC----CC--ChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCC------CCHHHH
Q 005499 587 EGVMHEGCGQTHEALRAYINALLIE----PS--YVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEP------TNRKAW 654 (693)
Q Consensus 587 lg~~~~~~g~~~~A~~~~~~al~~~----p~--~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p------~~~~~~ 654 (693)
+|.++...|+++.|+++|+..+.+. .. ....-+.||..|.-..+++ .|+.++.+-+.+.. ....++
T Consensus 241 lgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~--kAI~Yh~rHLaIAqeL~DriGe~Rac 318 (639)
T KOG1130|consen 241 LGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQ--KAITYHQRHLAIAQELEDRIGELRAC 318 (639)
T ss_pred cchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 9999999999999999999887542 22 2346678999999999988 99999998877542 245788
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhc
Q 005499 655 YYLGLVHKDDGRIADAADCFQAASML 680 (693)
Q Consensus 655 ~~lg~~~~~~g~~~~A~~~~~~al~l 680 (693)
+.||..+-..|..++|+.+.++.+++
T Consensus 319 wSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 319 WSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999998888764
No 115
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.35 E-value=1.1e-11 Score=104.50 Aligned_cols=102 Identities=15% Similarity=0.043 Sum_probs=62.9
Q ss_pred ccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHH
Q 005499 544 VNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGS 623 (693)
Q Consensus 544 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 623 (693)
+...+..+.+|..+...|++++|...|+-+..++|.++..|++||.++..+|++++|+..|.+++.++|+++.++.++|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 33455556666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHhCCCChHHHHHHHHHHHhhC
Q 005499 624 LFSKLGPKALPVARSLLSDALRIE 647 (693)
Q Consensus 624 ~~~~~g~~~l~~A~~~~~~al~~~ 647 (693)
|+...|+.+ .|++.|+.++...
T Consensus 112 c~L~lG~~~--~A~~aF~~Ai~~~ 133 (157)
T PRK15363 112 CYLACDNVC--YAIKALKAVVRIC 133 (157)
T ss_pred HHHHcCCHH--HHHHHHHHHHHHh
Confidence 666666655 6666666666544
No 116
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.35 E-value=5.1e-12 Score=116.17 Aligned_cols=103 Identities=26% Similarity=0.310 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 005499 582 EMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVH 661 (693)
Q Consensus 582 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~ 661 (693)
+-+-.-|.-+...++|.+|+..|.+|+.++|+++..+.+.+.+|.++|.++ .|++.++.++.++|....+|..||.+|
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~--~AVkDce~Al~iDp~yskay~RLG~A~ 159 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYE--DAVKDCESALSIDPHYSKAYGRLGLAY 159 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchH--HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 345667888899999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHhcccCCCC
Q 005499 662 KDDGRIADAADCFQAASMLEESDPI 686 (693)
Q Consensus 662 ~~~g~~~~A~~~~~~al~l~p~~~~ 686 (693)
..+|++++|++.|++|++++|+|++
T Consensus 160 ~~~gk~~~A~~aykKaLeldP~Ne~ 184 (304)
T KOG0553|consen 160 LALGKYEEAIEAYKKALELDPDNES 184 (304)
T ss_pred HccCcHHHHHHHHHhhhccCCCcHH
Confidence 9999999999999999999999984
No 117
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.34 E-value=3e-11 Score=130.83 Aligned_cols=152 Identities=13% Similarity=0.037 Sum_probs=106.4
Q ss_pred cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcC
Q 005499 452 TGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFG 531 (693)
Q Consensus 452 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 531 (693)
.|.+. .+|..++..+...+++++|+..++.+++.+| +...+++.+|.++...+++.++... .++...+....- .
T Consensus 27 ~p~n~-~a~~~Li~~~~~~~~~deai~i~~~~l~~~P--~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~-~ 100 (906)
T PRK14720 27 SLSKF-KELDDLIDAYKSENLTDEAKDICEEHLKEHK--KSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKW-A 100 (906)
T ss_pred CcchH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--cceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccch-h
Confidence 45555 6666666666666666666666666666666 5666666666666666666665554 444443322100 0
Q ss_pred CcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 005499 532 PLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLI 610 (693)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 610 (693)
...-+.......+.+-.+++.+|.+|-++|++++|...|+++++.+|+++.++.++|..+... +.++|++++.+++..
T Consensus 101 ~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 101 IVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 000000111222444579999999999999999999999999999999999999999999999 999999999999875
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.32 E-value=6.2e-10 Score=113.85 Aligned_cols=220 Identities=19% Similarity=0.178 Sum_probs=190.3
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHH
Q 005499 269 KWDPAVMEHLTYALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLA 348 (693)
Q Consensus 269 p~~~~~~~~l~~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~ 348 (693)
|+-..+-..++..+...|-...|...||+ .+.|-..+.||...|+..+|..+..+-+++ |.++..+..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~lek---~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELEK---DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhcC---CCcchhHHHh
Confidence 44455677889999999999999999996 468999999999999999999999998882 6777777777
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChH
Q 005499 349 AKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNAD 428 (693)
Q Consensus 349 a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 428 (693)
|.+..... +++++.+... ...+.+...+|....+.+++ .++...|+..++++|-...
T Consensus 464 GDv~~d~s--------~yEkawElsn----~~sarA~r~~~~~~~~~~~f-----------s~~~~hle~sl~~nplq~~ 520 (777)
T KOG1128|consen 464 GDVLHDPS--------LYEKAWELSN----YISARAQRSLALLILSNKDF-----------SEADKHLERSLEINPLQLG 520 (777)
T ss_pred hhhccChH--------HHHHHHHHhh----hhhHHHHHhhccccccchhH-----------HHHHHHHHHHhhcCccchh
Confidence 77654333 3444444332 12266778888888889999 9999999999999999999
Q ss_pred HHHHH-----HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHH
Q 005499 429 LFFDL-----EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLK 503 (693)
Q Consensus 429 ~~~~l-----~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 503 (693)
.|+.+ +.+++..|.+.|.+.+.+.|++. .+|.+++..|...++-.+|...+.++++.+- .+..+|.+...+.
T Consensus 521 ~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~-eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~--~~w~iWENymlvs 597 (777)
T KOG1128|consen 521 TWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNA-EAWNNLSTAYIRLKKKKRAFRKLKEALKCNY--QHWQIWENYMLVS 597 (777)
T ss_pred HHHhccHHHHHHhhhHHHHHHHHHHhhcCCCch-hhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC--CCCeeeechhhhh
Confidence 99998 89999999999999999999999 9999999999999999999999999999986 8899999999999
Q ss_pred HHhCChhHHHHHHHHHHHHHHh
Q 005499 504 IAQALPMDAIETYRYLLALVQA 525 (693)
Q Consensus 504 ~~~g~~~~A~~~~~~~l~~~~~ 525 (693)
...|.+++|++.+++.+.....
T Consensus 598 vdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 598 VDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred hhcccHHHHHHHHHHHHHhhhh
Confidence 9999999999999999987543
No 119
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.31 E-value=4.5e-11 Score=103.54 Aligned_cols=113 Identities=19% Similarity=0.107 Sum_probs=52.3
Q ss_pred HHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHh
Q 005499 480 TDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSG 559 (693)
Q Consensus 480 ~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 559 (693)
+++++..+| .+......+|..+...|++++|+..+++++..+| .+..+|..+|.++..
T Consensus 6 ~~~~l~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p--------------------~~~~~~~~la~~~~~ 63 (135)
T TIGR02552 6 LKDLLGLDS--EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP--------------------YNSRYWLGLAACCQM 63 (135)
T ss_pred HHHHHcCCh--hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC--------------------CcHHHHHHHHHHHHH
Confidence 344444444 3444444444444444444444444444444432 223444444444444
Q ss_pred CCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 005499 560 LSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSY 614 (693)
Q Consensus 560 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 614 (693)
.|++++|..++++++..+|.++..++.+|.++...|++++|+..|+++++.+|++
T Consensus 64 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 64 LKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGEN 118 (135)
T ss_pred HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 4444444444444444444444444444444444444444444444444444444
No 120
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.29 E-value=4.1e-11 Score=101.09 Aligned_cols=111 Identities=9% Similarity=-0.076 Sum_probs=104.0
Q ss_pred HHhhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCH
Q 005499 573 ARELK-AYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNR 651 (693)
Q Consensus 573 al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~ 651 (693)
...+. ++..+..+.+|..+...|++++|...|+-...++|.+...|++||.++..+|++. +|+..|.+++.++|++|
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~--~AI~aY~~A~~L~~ddp 103 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWG--EAIYAYGRAAQIKIDAP 103 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHH--HHHHHHHHHHhcCCCCc
Confidence 44566 7778899999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCC
Q 005499 652 KAWYYLGLVHKDDGRIADAADCFQAASMLEESDP 685 (693)
Q Consensus 652 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 685 (693)
.+++++|.++...|+.+.|+..|+.|+...-++|
T Consensus 104 ~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 104 QAPWAAAECYLACDNVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCh
Confidence 9999999999999999999999999999874443
No 121
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.25 E-value=3.9e-11 Score=116.30 Aligned_cols=222 Identities=13% Similarity=0.053 Sum_probs=160.9
Q ss_pred HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHH
Q 005499 434 EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAI 513 (693)
Q Consensus 434 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 513 (693)
.+|+++..+...... .+... .+...++..+...++.+.++..++..+.......+..+....|.++...|++++|+
T Consensus 47 Alg~~~~vl~ei~~~---~~~~l-~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL 122 (290)
T PF04733_consen 47 ALGQYDSVLSEIKKS---SSPEL-QAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEAL 122 (290)
T ss_dssp HTT-HHHHHHHS-TT---SSCCC-HHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHH
T ss_pred HcCChhHHHHHhccC---CChhH-HHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHH
Confidence 677777665544331 22233 66677777666555666777766665544321024455666778888889999998
Q ss_pred HHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 005499 514 ETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEG 593 (693)
Q Consensus 514 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 593 (693)
+.+.+.- +.++......++...++++.|.+.++.+.+.+.+..-+....+++...
T Consensus 123 ~~l~~~~-------------------------~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~ 177 (290)
T PF04733_consen 123 KLLHKGG-------------------------SLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLA 177 (290)
T ss_dssp CCCTTTT-------------------------CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHH
T ss_pred HHHHccC-------------------------cccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 8876541 146666778889999999999999999888887777666666777766
Q ss_pred CC--ChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCh-HHH
Q 005499 594 CG--QTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRI-ADA 670 (693)
Q Consensus 594 ~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-~~A 670 (693)
.| .+.+|...|++.....|..+..++.++.++..+|+++ +|...+.+++..+|++++++.+++.+....|+. +.+
T Consensus 178 ~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~--eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~ 255 (290)
T PF04733_consen 178 TGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYE--EAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAA 255 (290)
T ss_dssp HTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HH--HHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHH
T ss_pred hCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHH--HHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHH
Confidence 66 5899999999988877788888999999999999988 999999999999999999999999999999988 556
Q ss_pred HHHHHHHHhcccCCCC
Q 005499 671 ADCFQAASMLEESDPI 686 (693)
Q Consensus 671 ~~~~~~al~l~p~~~~ 686 (693)
.+++.+....+|++|.
T Consensus 256 ~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 256 ERYLSQLKQSNPNHPL 271 (290)
T ss_dssp HHHHHHCHHHTTTSHH
T ss_pred HHHHHHHHHhCCCChH
Confidence 6777777778888774
No 122
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.21 E-value=8.2e-10 Score=107.13 Aligned_cols=90 Identities=18% Similarity=0.137 Sum_probs=53.4
Q ss_pred ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHH
Q 005499 562 HWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLS 641 (693)
Q Consensus 562 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~ 641 (693)
.+.+|...|++.....+.++..++.++.++..+|+|++|...+++++..+|++++++.+++.+...+|+.. +.+.+++.
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~-~~~~~~l~ 260 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPT-EAAERYLS 260 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TC-HHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCCh-hHHHHHHH
Confidence 46666666666655555666666666666666666666666666666666666666666666666666663 14555555
Q ss_pred HHHhhCCCCHH
Q 005499 642 DALRIEPTNRK 652 (693)
Q Consensus 642 ~al~~~p~~~~ 652 (693)
+....+|+++.
T Consensus 261 qL~~~~p~h~~ 271 (290)
T PF04733_consen 261 QLKQSNPNHPL 271 (290)
T ss_dssp HCHHHTTTSHH
T ss_pred HHHHhCCCChH
Confidence 55556666554
No 123
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.19 E-value=3.7e-09 Score=103.91 Aligned_cols=153 Identities=16% Similarity=0.039 Sum_probs=99.9
Q ss_pred CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCC
Q 005499 453 GGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGP 532 (693)
Q Consensus 453 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 532 (693)
|... .+++..+..++..|++++|+..++..+...| +++..+...+.++...++..+|.+.+++++...|..
T Consensus 303 ~~~~-aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P--~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~------ 373 (484)
T COG4783 303 RGGL-AAQYGRALQTYLAGQYDEALKLLQPLIAAQP--DNPYYLELAGDILLEANKAKEAIERLKKALALDPNS------ 373 (484)
T ss_pred ccch-HHHHHHHHHHHHhcccchHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc------
Confidence 4444 6666666666777777777777777666666 666666667777777777777777777776666333
Q ss_pred cccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 005499 533 LRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEP 612 (693)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 612 (693)
...+.++|.++.+.|++.+|+..+++.+..+|+++..|..++..|..+|+..+|...+
T Consensus 374 --------------~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-------- 431 (484)
T COG4783 374 --------------PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-------- 431 (484)
T ss_pred --------------cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH--------
Confidence 4666667777777777777777777766666777777777777776666665544333
Q ss_pred CChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhC
Q 005499 613 SYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIE 647 (693)
Q Consensus 613 ~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~ 647 (693)
+..|...|+++ +|+..+.++.+..
T Consensus 432 ---------AE~~~~~G~~~--~A~~~l~~A~~~~ 455 (484)
T COG4783 432 ---------AEGYALAGRLE--QAIIFLMRASQQV 455 (484)
T ss_pred ---------HHHHHhCCCHH--HHHHHHHHHHHhc
Confidence 33444556666 6666666666654
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.17 E-value=9.5e-10 Score=107.96 Aligned_cols=131 Identities=15% Similarity=0.118 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHH
Q 005499 546 EFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLF 625 (693)
Q Consensus 546 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 625 (693)
...+++..+..+...|++++|+..++..+...|+++..+...+.++...++..+|.+.+++++.++|..+..+.++|.+|
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~al 384 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQAL 384 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005499 626 SKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAAS 678 (693)
Q Consensus 626 ~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 678 (693)
.+.|++. +|+..+++.+..+|+++..|..|+..|..+|+..+|...+....
T Consensus 385 l~~g~~~--eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 385 LKGGKPQ--EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HhcCChH--HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 9999999 99999999999999999999999988888777655555444433
No 125
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.16 E-value=5.4e-10 Score=112.73 Aligned_cols=113 Identities=15% Similarity=0.097 Sum_probs=107.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhC
Q 005499 550 WHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLG 629 (693)
Q Consensus 550 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 629 (693)
+...|..++..|++++|+.+|++++..+|+++.+++.+|.++...|++++|+..+++++.++|+++.+++.+|.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 005499 630 PKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDD 664 (693)
Q Consensus 630 ~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 664 (693)
+++ +|+..|+++++++|+++.+...++.+....
T Consensus 85 ~~~--eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQ--TAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999 999999999999999999999888886655
No 126
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=1.7e-09 Score=100.66 Aligned_cols=123 Identities=23% Similarity=0.210 Sum_probs=111.4
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCC-ChHHHHHHHH
Q 005499 563 WKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPK-ALPVARSLLS 641 (693)
Q Consensus 563 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~l~~A~~~~~ 641 (693)
.+..+.-++.-+..+|+++.-|..||.+|..+|++..|...|.+++++.|++++.+..+|.++....+. .-.++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 566677788888999999999999999999999999999999999999999999999999988765432 2348999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCC
Q 005499 642 DALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASMLEESDP 685 (693)
Q Consensus 642 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 685 (693)
++++.+|++..+.+.||..++..|+|.+|+..++..++..|.+.
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999999999999877553
No 127
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.13 E-value=3.9e-09 Score=97.68 Aligned_cols=172 Identities=15% Similarity=0.015 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccc
Q 005499 458 KGWKLLALVLSAQQRFSEAEVVTDAALDETTKW-EQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCL 536 (693)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 536 (693)
..++..|..+...|+|.+|+..|++++...|.. ....+.+.+|.++...|++++|+..+++.+...|.+
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~---------- 75 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNS---------- 75 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-----------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC----------
Confidence 455555555555566666666666555555521 113345555555555555555555555555555554
Q ss_pred cchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 005499 537 SQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVP 616 (693)
Q Consensus 537 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 616 (693)
+....+++.+|.++.....-. + ......+...+|+..|+..+...|++..
T Consensus 76 -------~~~~~A~Y~~g~~~~~~~~~~---------~--------------~~~~D~~~~~~A~~~~~~li~~yP~S~y 125 (203)
T PF13525_consen 76 -------PKADYALYMLGLSYYKQIPGI---------L--------------RSDRDQTSTRKAIEEFEELIKRYPNSEY 125 (203)
T ss_dssp -------TTHHHHHHHHHHHHHHHHHHH---------H---------------TT---HHHHHHHHHHHHHHHH-TTSTT
T ss_pred -------cchhhHHHHHHHHHHHhCccc---------h--------------hcccChHHHHHHHHHHHHHHHHCcCchH
Confidence 333455555555544321110 0 0001111223455555555555554421
Q ss_pred -----------------HHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCChHHHH
Q 005499 617 -----------------CKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNR---KAWYYLGLVHKDDGRIADAA 671 (693)
Q Consensus 617 -----------------~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~ 671 (693)
--..+|..|.+.|.+. .|+..++.+++..|+.+ +++..++..|..+|..+.|.
T Consensus 126 ~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~--aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 126 AEEAKKRLAELRNRLAEHELYIARFYYKRGKYK--AAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HH--HHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH--HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 2234677777888877 88888888888888764 56777888888888877443
No 128
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.12 E-value=5.3e-10 Score=112.79 Aligned_cols=103 Identities=17% Similarity=0.105 Sum_probs=98.4
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 005499 584 LHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKD 663 (693)
Q Consensus 584 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 663 (693)
+...|..++..|++++|+..|++++.++|++..++.++|.++..+|+++ +|+..+++++.++|+++.+++.+|.++..
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~--eAl~~~~~Al~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFT--EAVADANKAIELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 4567888999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhcccCCCCCc
Q 005499 664 DGRIADAADCFQAASMLEESDPIES 688 (693)
Q Consensus 664 ~g~~~~A~~~~~~al~l~p~~~~~~ 688 (693)
+|++++|+..|++++.++|+++.+.
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~ 107 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFT 107 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999999999999999988653
No 129
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.10 E-value=1.2e-08 Score=96.50 Aligned_cols=56 Identities=18% Similarity=0.147 Sum_probs=44.9
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHH
Q 005499 619 VLVGSLFSKLGPKALPVARSLLSDALRIEPTN---RKAWYYLGLVHKDDGRIADAADCFQA 676 (693)
Q Consensus 619 ~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~ 676 (693)
..+|..|.+.|.+. .|+.-++.+++..|+. +++++.++..|..+|..++|......
T Consensus 179 ~~ia~~Y~~~~~y~--AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 179 LSVAEYYTKRGAYV--AVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHHcCchH--HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 35677788888888 8888899988888775 46788888899999998888776543
No 130
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.09 E-value=8.3e-09 Score=95.48 Aligned_cols=156 Identities=13% Similarity=0.021 Sum_probs=113.6
Q ss_pred HhCCHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHhCChh
Q 005499 434 EQRNLSTALRYAKQYIDATGGSV--LKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWE-QGPILRLKAKLKIAQALPM 510 (693)
Q Consensus 434 ~~~~~~~A~~~~~~al~~~p~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~l~~~~~~~g~~~ 510 (693)
..|++.+|+..|++++...|.+. ..+.+.+|.++...|++++|+..+++.+..+|... ...+++.+|.++..+.
T Consensus 17 ~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~--- 93 (203)
T PF13525_consen 17 QQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQI--- 93 (203)
T ss_dssp HCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHH---
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhC---
Confidence 89999999999999999988763 26789999999999999999999999999999321 1345666666555441
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHH--------
Q 005499 511 DAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAE-------- 582 (693)
Q Consensus 511 ~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-------- 582 (693)
...+ ......+...+|+..|+..+...|++..
T Consensus 94 ------~~~~----------------------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l 133 (203)
T PF13525_consen 94 ------PGIL----------------------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRL 133 (203)
T ss_dssp ------HHHH-----------------------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHH
T ss_pred ------ccch----------------------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHH
Confidence 0000 1112333456788888888888887632
Q ss_pred ---------HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCCh---hHHHHHHHHHHHhCCCC
Q 005499 583 ---------MLHTEGVMHEGCGQTHEALRAYINALLIEPSYV---PCKVLVGSLFSKLGPKA 632 (693)
Q Consensus 583 ---------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~ 632 (693)
--+.+|..|.+.|.+..|+..++.+++..|+.. .++..++.+|.++|..+
T Consensus 134 ~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 134 AELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 134578999999999999999999999999875 57889999999999865
No 131
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.09 E-value=2.2e-08 Score=94.86 Aligned_cols=164 Identities=11% Similarity=-0.148 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHH---HHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcc
Q 005499 458 KGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPI---LRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLR 534 (693)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~ 534 (693)
..++..|..+...|++++|+..|++++...| ....+ .+.+|.++...+++++|+..+++.++.+|++
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP--~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~-------- 102 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNRYP--FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH-------- 102 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCC--------
Confidence 6678888888899999999999999999988 55444 4788999999999999999999999999887
Q ss_pred cccchhhhcccHHHHHHHHHHHHHhCC---------------C---hHHHHHHHHHHHhhCCCCHHH-------------
Q 005499 535 CLSQIEDDKVNEFQVWHGLANLYSGLS---------------H---WKDVAICMGKARELKAYSAEM------------- 583 (693)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~la~~~~~~~---------------~---~~~A~~~~~~al~~~p~~~~~------------- 583 (693)
|....+++.+|.++...+ + ..+|+..|++.++..|++..+
T Consensus 103 ---------~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~ 173 (243)
T PRK10866 103 ---------PNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDR 173 (243)
T ss_pred ---------CchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH
Confidence 556788888887754443 1 356889999999999987432
Q ss_pred ----HHHHHHHHHHCCChHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHHhCCCChHHHHHHHHH
Q 005499 584 ----LHTEGVMHEGCGQTHEALRAYINALLIEPSY---VPCKVLVGSLFSKLGPKALPVARSLLSD 642 (693)
Q Consensus 584 ----~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~l~~A~~~~~~ 642 (693)
-+..|..|.+.|.|..|+.-++.+++..|+. .+++..++..|..+|..+ +|......
T Consensus 174 la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~--~a~~~~~~ 237 (243)
T PRK10866 174 LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNA--QADKVAKI 237 (243)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChH--HHHHHHHH
Confidence 2457888999999999999999999998875 468999999999999998 88876644
No 132
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.08 E-value=1.3e-09 Score=91.99 Aligned_cols=103 Identities=16% Similarity=0.143 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC---hhHHHHH
Q 005499 548 QVWHGLANLYSGLSHWKDVAICMGKARELKAYS---AEMLHTEGVMHEGCGQTHEALRAYINALLIEPSY---VPCKVLV 621 (693)
Q Consensus 548 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 621 (693)
.+++.+|..+...|++++|+..|++++..+|++ +.+++.+|.++...|++++|+..|++++..+|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 445556666666666666666666666555544 3455556666666666666666666666555553 3455556
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHhhCCCCHH
Q 005499 622 GSLFSKLGPKALPVARSLLSDALRIEPTNRK 652 (693)
Q Consensus 622 a~~~~~~g~~~l~~A~~~~~~al~~~p~~~~ 652 (693)
|.++...|+++ +|..+++++++..|+++.
T Consensus 83 ~~~~~~~~~~~--~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 83 GMSLQELGDKE--KAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHhCChH--HHHHHHHHHHHHCcCChh
Confidence 66666666655 666666666666555544
No 133
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.05 E-value=4.1e-09 Score=88.95 Aligned_cols=105 Identities=16% Similarity=0.161 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCC---HHHH
Q 005499 581 AEMLHTEGVMHEGCGQTHEALRAYINALLIEPSY---VPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTN---RKAW 654 (693)
Q Consensus 581 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~---~~~~ 654 (693)
+..++.+|..+...|++++|+..|++++..+|++ ..+++.+|.++...|+++ +|+..|++++...|++ +.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~~ 79 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYA--DAAKAFLAVVKKYPKSPKAPDAL 79 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHH--HHHHHHHHHHHHCCCCCcccHHH
Confidence 4678999999999999999999999999999876 468999999999999999 9999999999998885 6789
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcccCCCCC
Q 005499 655 YYLGLVHKDDGRIADAADCFQAASMLEESDPIE 687 (693)
Q Consensus 655 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 687 (693)
+.+|.++...|++++|+.+|+++++..|+++..
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 999999999999999999999999999998753
No 134
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.04 E-value=1e-08 Score=92.53 Aligned_cols=121 Identities=17% Similarity=0.154 Sum_probs=79.7
Q ss_pred CchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHH
Q 005499 491 EQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICM 570 (693)
Q Consensus 491 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 570 (693)
.....++.+|..+...|++++|+.+|++++...|+. +....++..+|.++...|++++|+..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----------------~~~~~~~~~la~~~~~~g~~~~A~~~~ 95 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP-----------------NDRSYILYNMGIIYASNGEHDKALEYY 95 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc-----------------chHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 344556777777777777777777777777665432 222456777777777777777777777
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCC
Q 005499 571 GKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTN 650 (693)
Q Consensus 571 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~ 650 (693)
++++...|.+...+..+|.++...|+...+...++.++.. ++ +|.+++++++..+|++
T Consensus 96 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~--------------------~~--~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 96 HQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEAL--------------------FD--KAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHH--------------------HH--HHHHHHHHHHhhCchh
Confidence 7777777777777777777777777765555544444321 34 6777777777777665
No 135
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.03 E-value=5.3e-08 Score=106.46 Aligned_cols=210 Identities=12% Similarity=0.064 Sum_probs=120.0
Q ss_pred HHHHHHHHHhcCCCChHHHHHH-----HhCCHHHHHHHHHHHHHh-cCCCc---HHHHHHHHHHHHHcCChHHHHHHHHH
Q 005499 412 ALKSLDGASTFENNNADLFFDL-----EQRNLSTALRYAKQYIDA-TGGSV---LKGWKLLALVLSAQQRFSEAEVVTDA 482 (693)
Q Consensus 412 A~~~~~~al~~~p~~~~~~~~l-----~~~~~~~A~~~~~~al~~-~p~~~---~~~~~~la~~~~~~g~~~~A~~~~~~ 482 (693)
..+.|.+.+.-+|+..-.|..+ +.++.++|.+.++++|.. ++... ...|..+-++...-|.-+.-.+.|++
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 3445555555566655555444 556666666666666642 22211 13344444444444544555555655
Q ss_pred HHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCC
Q 005499 483 ALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSH 562 (693)
Q Consensus 483 al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 562 (693)
+-+... ...++..|..+|...+.+++|.++++.+++... ....+|..++..++++++
T Consensus 1523 Acqycd---~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--------------------q~~~vW~~y~~fLl~~ne 1579 (1710)
T KOG1070|consen 1523 ACQYCD---AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--------------------QTRKVWIMYADFLLRQNE 1579 (1710)
T ss_pred HHHhcc---hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--------------------chhhHHHHHHHHHhcccH
Confidence 555443 345555666666666666666666666666552 224566666666666666
Q ss_pred hHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHH
Q 005499 563 WKDVAICMGKARELKAY--SAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLL 640 (693)
Q Consensus 563 ~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~ 640 (693)
-+.|..++.+|++.-|. +.......+.+.++.|+.+.+...|+..+..+|...+.|.-+...-.+.|+.+ -++.+|
T Consensus 1580 ~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~--~vR~lf 1657 (1710)
T KOG1070|consen 1580 AEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIK--YVRDLF 1657 (1710)
T ss_pred HHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHH--HHHHHH
Confidence 66666666666666555 44555556666666666666666666666666666666666666666666555 666666
Q ss_pred HHHHhh
Q 005499 641 SDALRI 646 (693)
Q Consensus 641 ~~al~~ 646 (693)
++++.+
T Consensus 1658 eRvi~l 1663 (1710)
T KOG1070|consen 1658 ERVIEL 1663 (1710)
T ss_pred HHHHhc
Confidence 666654
No 136
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.02 E-value=4.4e-09 Score=94.89 Aligned_cols=119 Identities=18% Similarity=0.187 Sum_probs=96.6
Q ss_pred ccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHH
Q 005499 544 VNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYS---AEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVL 620 (693)
Q Consensus 544 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 620 (693)
+....+++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+..+++++...|.+..++..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 4456778888999999999999999999988876653 4678888999999999999999999999988888888888
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCC
Q 005499 621 VGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASMLEESD 684 (693)
Q Consensus 621 la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 684 (693)
+|.++...|+.. .+...+..++. .+++|++++++++.++|++
T Consensus 112 lg~~~~~~g~~~--~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 112 IAVIYHKRGEKA--EEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHcCChH--hHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence 888888888876 66655555442 2678888888888888876
No 137
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.01 E-value=3.2e-09 Score=85.58 Aligned_cols=98 Identities=29% Similarity=0.385 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 005499 583 MLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHK 662 (693)
Q Consensus 583 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 662 (693)
+++.+|.++...|++++|+..+++++...|.+..++..+|.++...|+++ +|...+++++...|.++.++..+|.++.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYE--EALEDYEKALELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 46677777777788888888888888777777777777888888888777 8888888888877777777888888888
Q ss_pred HcCChHHHHHHHHHHHhccc
Q 005499 663 DDGRIADAADCFQAASMLEE 682 (693)
Q Consensus 663 ~~g~~~~A~~~~~~al~l~p 682 (693)
..|++++|..++.+++...|
T Consensus 80 ~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 80 KLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHhHHHHHHHHHHHHccCC
Confidence 88888888888888777665
No 138
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.00 E-value=5e-09 Score=94.23 Aligned_cols=120 Identities=19% Similarity=0.196 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHHhCCCChHHHH
Q 005499 563 WKDVAICMGKARELKAYS--AEMLHTEGVMHEGCGQTHEALRAYINALLIEPSY---VPCKVLVGSLFSKLGPKALPVAR 637 (693)
Q Consensus 563 ~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~l~~A~ 637 (693)
+..+...+...++..+.+ ...++.+|.++...|++++|+..|++++.+.|+. +.++.++|.++...|+++ +|+
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~--eA~ 92 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHT--KAL 92 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHH--HHH
Confidence 444555554444444433 4567888888888888888888888888776653 347888888888888888 888
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHH-------HcCChH-------HHHHHHHHHHhcccCC
Q 005499 638 SLLSDALRIEPTNRKAWYYLGLVHK-------DDGRIA-------DAADCFQAASMLEESD 684 (693)
Q Consensus 638 ~~~~~al~~~p~~~~~~~~lg~~~~-------~~g~~~-------~A~~~~~~al~l~p~~ 684 (693)
..+++++++.|.....+..+|.++. ..|+++ +|+.+|++++..+|++
T Consensus 93 ~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 93 EYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 8888888888888888888887777 666655 6666777778888754
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.99 E-value=2e-08 Score=87.67 Aligned_cols=118 Identities=17% Similarity=0.045 Sum_probs=103.2
Q ss_pred HhCCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHHhCCC
Q 005499 558 SGLSHWKDVAICMGKARELKAYS---AEMLHTEGVMHEGCGQTHEALRAYINALLIEPSY---VPCKVLVGSLFSKLGPK 631 (693)
Q Consensus 558 ~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~ 631 (693)
...+++..+...+++.+..+|++ ..+.+.+|.++...|++++|+..|+.++...|+. ..+...++.++...|++
T Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 22 LQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 36888999999999999999998 4578889999999999999999999999987665 35788999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005499 632 ALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAAS 678 (693)
Q Consensus 632 ~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 678 (693)
+ +|+..++. +...+-.+.++..+|.++...|++++|+..|++|+
T Consensus 102 d--~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 102 D--EALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred H--HHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 9 99999966 33444567788899999999999999999999985
No 140
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.98 E-value=1.4e-08 Score=91.39 Aligned_cols=103 Identities=10% Similarity=0.029 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHH
Q 005499 473 FSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHG 552 (693)
Q Consensus 473 ~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (693)
+..+...+...++..+.......++.+|.++...|++++|+..|++++.+.|+. +..+.++.+
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-----------------~~~~~~~~~ 77 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP-----------------YDRSYILYN 77 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc-----------------hhhHHHHHH
Confidence 444444444443333311234455666666666666666666666666554322 122345666
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 005499 553 LANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHE 592 (693)
Q Consensus 553 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 592 (693)
+|.++...|++++|+..+++++.+.|.....+..+|.++.
T Consensus 78 lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 78 IGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666666655
No 141
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.97 E-value=2.1e-09 Score=80.22 Aligned_cols=66 Identities=24% Similarity=0.387 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC-ChHHHHHHHHHHHhhCC
Q 005499 547 FQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCG-QTHEALRAYINALLIEP 612 (693)
Q Consensus 547 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p 612 (693)
+.+|..+|.++...|++++|+.+|++++..+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4667777777777777777777777777777777777777777777777 57777777777777766
No 142
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.96 E-value=1.3e-09 Score=81.48 Aligned_cols=66 Identities=24% Similarity=0.394 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhccc
Q 005499 615 VPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDG-RIADAADCFQAASMLEE 682 (693)
Q Consensus 615 ~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~l~p 682 (693)
+..|..+|.++...|+++ +|+..|+++++.+|+++.+|+++|.++..+| ++++|+..|+++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~--~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYE--EAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHH--HHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 445555555555555555 5555555555555555555555555555555 45555555555555554
No 143
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.94 E-value=9.2e-07 Score=91.82 Aligned_cols=224 Identities=13% Similarity=0.104 Sum_probs=141.4
Q ss_pred CcccCCChhHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHH------------HhhcCCCCCcHHH
Q 005499 241 GSYAPKNNLEEAILLLLILMKKYHLGKIKWDPAVMEHLTYALSLCSQTSILAKQL------------EEIMPGVFLRSDR 308 (693)
Q Consensus 241 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~------------e~~l~~~~~~~~~ 308 (693)
++|+.-|+.++|..-+... ....+|.+++....+..+.+-|.-++ .++.+. ++ +.
T Consensus 736 SfyvtiG~MD~AfksI~~I----------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~-~~--e~ 802 (1416)
T KOG3617|consen 736 SFYVTIGSMDAAFKSIQFI----------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN-GE--ED 802 (1416)
T ss_pred eEEEEeccHHHHHHHHHHH----------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC-Cc--ch
Confidence 5678888888887654322 23456777777666666555544433 333322 22 23
Q ss_pred HHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHH
Q 005499 309 WNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLAAKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRML 388 (693)
Q Consensus 309 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 388 (693)
-...|......|..++|..+|+++-+. -++-+++...|.|. +|.+..+. .+....-..|+..
T Consensus 803 eakvAvLAieLgMlEeA~~lYr~ckR~----------DLlNKlyQs~g~w~-eA~eiAE~-------~DRiHLr~Tyy~y 864 (1416)
T KOG3617|consen 803 EAKVAVLAIELGMLEEALILYRQCKRY----------DLLNKLYQSQGMWS-EAFEIAET-------KDRIHLRNTYYNY 864 (1416)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHH----------HHHHHHHHhcccHH-HHHHHHhh-------ccceehhhhHHHH
Confidence 345667778899999999999998772 35566777778777 77665532 1122224557777
Q ss_pred HHHHhhhhcccCChHHHhHHHHHHHHHHHHHH----------hcCCCChHHHHHH---------------HhCCHHHHHH
Q 005499 389 GLCLGRHAKVSSSDYERSRLQSEALKSLDGAS----------TFENNNADLFFDL---------------EQRNLSTALR 443 (693)
Q Consensus 389 g~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al----------~~~p~~~~~~~~l---------------~~~~~~~A~~ 443 (693)
+.-+...++. +.|+++|+++- .-+|.....+.+. ..|+.+.|+.
T Consensus 865 A~~Lear~Di-----------~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~ 933 (1416)
T KOG3617|consen 865 AKYLEARRDI-----------EAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALS 933 (1416)
T ss_pred HHHHHhhccH-----------HHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHH
Confidence 7777777788 89999998763 1122211111110 4555566665
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 005499 444 YAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLAL 522 (693)
Q Consensus 444 ~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 522 (693)
+|..+ .-|+.+..+.+-+|+.++|-.+.++ . .+..+.+.+|+.|...|++.+|+..|.++-..
T Consensus 934 ~Y~~A---------~D~fs~VrI~C~qGk~~kAa~iA~e-----s--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 934 FYSSA---------KDYFSMVRIKCIQGKTDKAARIAEE-----S--GDKAACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred HHHHh---------hhhhhheeeEeeccCchHHHHHHHh-----c--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 55544 3445555555666666666554443 2 46677889999999999999999998877554
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.94 E-value=3.8e-08 Score=85.82 Aligned_cols=120 Identities=17% Similarity=0.049 Sum_probs=89.4
Q ss_pred HcCChHHHHHHHHHHHhhcCCCCc---hHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhccc
Q 005499 469 AQQRFSEAEVVTDAALDETTKWEQ---GPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVN 545 (693)
Q Consensus 469 ~~g~~~~A~~~~~~al~~~p~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (693)
..++...+...++..+..+| +. ..+.+.++.++...|++++|+..|+.++...|+. ..
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~--~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~-----------------~l 83 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYP--SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDP-----------------EL 83 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCC--CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCH-----------------HH
Confidence 46777778778888888877 44 4556778888888888888888888888765322 22
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 005499 546 EFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINAL 608 (693)
Q Consensus 546 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 608 (693)
...+.+.++.++...|++++|+..++. +...+..+.++..+|.++...|++++|+..|++++
T Consensus 84 ~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 84 KPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 356777888888888888888888865 33344456677788888888888888888888764
No 145
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.93 E-value=2.4e-08 Score=104.86 Aligned_cols=133 Identities=13% Similarity=0.011 Sum_probs=111.2
Q ss_pred HHHHHHHHhCC---ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC--------ChHHHHHHHHHHHhh--CCCChhH
Q 005499 551 HGLANLYSGLS---HWKDVAICMGKARELKAYSAEMLHTEGVMHEGCG--------QTHEALRAYINALLI--EPSYVPC 617 (693)
Q Consensus 551 ~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--------~~~~A~~~~~~al~~--~p~~~~~ 617 (693)
+..|..+...+ +...|+.+|+++++++|+++.++..++.++.... +...+....++++.+ +|..+.+
T Consensus 343 ~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~ 422 (517)
T PRK10153 343 FYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRI 422 (517)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHH
Confidence 34454454443 3779999999999999999999998888776542 234556666666664 6777788
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCC
Q 005499 618 KVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASMLEESDPI 686 (693)
Q Consensus 618 ~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 686 (693)
+..+|......|+++ +|...+++++.++| +..+|..+|.++...|++++|++.|++|+.++|.+|.
T Consensus 423 ~~ala~~~~~~g~~~--~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 423 YEILAVQALVKGKTD--EAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHhcCCHH--HHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 999999999999999 99999999999999 5889999999999999999999999999999999885
No 146
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.93 E-value=8.9e-09 Score=82.91 Aligned_cols=99 Identities=26% Similarity=0.318 Sum_probs=94.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHh
Q 005499 549 VWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKL 628 (693)
Q Consensus 549 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 628 (693)
+++.+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+.++++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhhCCC
Q 005499 629 GPKALPVARSLLSDALRIEPT 649 (693)
Q Consensus 629 g~~~l~~A~~~~~~al~~~p~ 649 (693)
|+++ +|...+.++++..|.
T Consensus 82 ~~~~--~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYE--EALEAYEKALELDPN 100 (100)
T ss_pred HhHH--HHHHHHHHHHccCCC
Confidence 9998 999999999988773
No 147
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.92 E-value=1.6e-09 Score=79.78 Aligned_cols=64 Identities=27% Similarity=0.490 Sum_probs=45.7
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCC
Q 005499 620 LVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASMLEESDP 685 (693)
Q Consensus 620 ~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 685 (693)
.+|..+.+.|+++ +|+..|+++++.+|+++.+|+.+|.++..+|++++|+..|+++++++|++|
T Consensus 2 ~~a~~~~~~g~~~--~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYD--EAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHH--HHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHH--HHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4566777777776 777777777777777777777777777777777777777777777777765
No 148
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.92 E-value=3.7e-05 Score=79.31 Aligned_cols=313 Identities=14% Similarity=0.062 Sum_probs=153.4
Q ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHH
Q 005499 306 SDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLAAKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGL 385 (693)
Q Consensus 306 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 385 (693)
.++.-.++.++.+..-|++|-.+|+++-. |+. +.-|++.|+-..+|+++.+-++-..- ...-
T Consensus 648 e~il~~ia~alik~elydkagdlfeki~d----~dk-------ale~fkkgdaf~kaielarfafp~ev-------v~le 709 (1636)
T KOG3616|consen 648 EEILEHIAAALIKGELYDKAGDLFEKIHD----FDK-------ALECFKKGDAFGKAIELARFAFPEEV-------VKLE 709 (1636)
T ss_pred HHHHHHHHHHHHhhHHHHhhhhHHHHhhC----HHH-------HHHHHHcccHHHHHHHHHHhhCcHHH-------hhHH
Confidence 33444555555555555566566655433 222 22344445444466666554443111 2223
Q ss_pred HHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChHHHHHHHhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 005499 386 RMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNADLFFDLEQRNLSTALRYAKQYIDATGGSVLKGWKLLAL 465 (693)
Q Consensus 386 ~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~ 465 (693)
...|.-+...|++ +.|+..|-.+-.+- ..+-..+...++.+|+..+.......... ..+-.++.
T Consensus 710 e~wg~hl~~~~q~-----------daainhfiea~~~~---kaieaai~akew~kai~ildniqdqk~~s--~yy~~iad 773 (1636)
T KOG3616|consen 710 EAWGDHLEQIGQL-----------DAAINHFIEANCLI---KAIEAAIGAKEWKKAISILDNIQDQKTAS--GYYGEIAD 773 (1636)
T ss_pred HHHhHHHHHHHhH-----------HHHHHHHHHhhhHH---HHHHHHhhhhhhhhhHhHHHHhhhhcccc--ccchHHHH
Confidence 3446666677777 77777776543110 00111114556666666666554433322 34556677
Q ss_pred HHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhccc
Q 005499 466 VLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVN 545 (693)
Q Consensus 466 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (693)
-|...|+|+-|.++|-++- ....-..+|.+.|++++|...-.+..... .
T Consensus 774 hyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~kw~da~kla~e~~~~e---------------------~ 822 (1636)
T KOG3616|consen 774 HYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGKWEDAFKLAEECHGPE---------------------A 822 (1636)
T ss_pred HhccchhHHHHHHHHHhcc----------hhHHHHHHHhccccHHHHHHHHHHhcCch---------------------h
Confidence 7777777777777765421 11122344555566666655444332110 0
Q ss_pred HHHHHHHHHHHHH-------------hCCChHHHHHHHHHH------H----hhCCCC-HHHHHHHHHHHHHCCChHHHH
Q 005499 546 EFQVWHGLANLYS-------------GLSHWKDVAICMGKA------R----ELKAYS-AEMLHTEGVMHEGCGQTHEAL 601 (693)
Q Consensus 546 ~~~~~~~la~~~~-------------~~~~~~~A~~~~~~a------l----~~~p~~-~~~~~~lg~~~~~~g~~~~A~ 601 (693)
....+...+.-+- ..|.++.|+..|.+. + +..|+. .+....+|.-+...|+...|.
T Consensus 823 t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae 902 (1636)
T KOG3616|consen 823 TISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAE 902 (1636)
T ss_pred HHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHH
Confidence 1122222222222 333334444444331 1 112222 345666777777778877777
Q ss_pred HHHHHHHhh------CCCC---------------hhHHHHHHHHHHHhCCCChHHHHHHHHHH-----------------
Q 005499 602 RAYINALLI------EPSY---------------VPCKVLVGSLFSKLGPKALPVARSLLSDA----------------- 643 (693)
Q Consensus 602 ~~~~~al~~------~p~~---------------~~~~~~la~~~~~~g~~~l~~A~~~~~~a----------------- 643 (693)
..|-++-.. .... ..+.-..+.+..+.=--+ .|.+++.+-
T Consensus 903 ~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggd--aavkllnk~gll~~~id~a~d~~afd 980 (1636)
T KOG3616|consen 903 EHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGD--AAVKLLNKHGLLEAAIDFAADNCAFD 980 (1636)
T ss_pred HHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcH--HHHHHHHhhhhHHHHhhhhhcccchh
Confidence 766544321 1000 001111111111110111 233322221
Q ss_pred --H-----hhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCC
Q 005499 644 --L-----RIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASMLEESDP 685 (693)
Q Consensus 644 --l-----~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 685 (693)
. ......+.++..++..+...|++++|-.+|-.+++++.-|-
T Consensus 981 ~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntyni 1029 (1636)
T KOG3616|consen 981 FAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNI 1029 (1636)
T ss_pred hHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcccccc
Confidence 0 11223456788899999999999999999999999876543
No 149
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.91 E-value=8.6e-05 Score=77.78 Aligned_cols=375 Identities=15% Similarity=0.125 Sum_probs=209.0
Q ss_pred cccCCcCHHHHHHHhhhccCCCHHHHHHHHHHHHhhcCCHHHHHhhhccCCcchhhhhccccchhhhhhhccCCCCCCCc
Q 005499 32 AKLDEGNIQEAESSLREGLSLNFEEARALLGRLEYQRGNVEGALRVFDGIDLHAAIQRLQPSFSEKSASKKCRSRSDSHV 111 (693)
Q Consensus 32 ~~~~~g~~~~A~~~~~~~l~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (693)
-|..-|+.|.|...++ .+...-+|-.|+....+..+.+-|-.++..+... ...+. .+.+.+..+
T Consensus 737 fyvtiG~MD~AfksI~---~IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~a-RgaRA---------lR~a~q~~~--- 800 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQ---FIKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNA-RGARA---------LRRAQQNGE--- 800 (1416)
T ss_pred EEEEeccHHHHHHHHH---HHhhhHHHHHHHHHhhhhccccHHHHhhhhhhhh-hhHHH---------HHHHHhCCc---
Confidence 3566799999988777 5677788899999999999999999888765311 00110 111111110
Q ss_pred cchhhHHHHHHHHHHHHHHHhHhhCChHHHHHHHHHHHHHHHHhhhcCCCChhhhhhHHHHHHHHHhhhHHHHhhcCCch
Q 005499 112 SVSQHAASLVLEAIYLKAKSLQKLGRLTEAANECKSVLDAVERIFQQGIPDAQVDNRLQETVSRAVELLPELWKQVGCDH 191 (693)
Q Consensus 112 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~ 191 (693)
+.-...|..-..+|.+++|...|++...-+ . |-.+|...|.++
T Consensus 801 -----------e~eakvAvLAieLgMlEeA~~lYr~ckR~D-------------------L-------lNKlyQs~g~w~ 843 (1416)
T KOG3617|consen 801 -----------EDEAKVAVLAIELGMLEEALILYRQCKRYD-------------------L-------LNKLYQSQGMWS 843 (1416)
T ss_pred -----------chhhHHHHHHHHHhhHHHHHHHHHHHHHHH-------------------H-------HHHHHHhcccHH
Confidence 112334566677888888888887663311 0 112344455555
Q ss_pred HHHHHHHHHhcccCCCChhHHHHHHHHHHHHhhhcccccCCCCCcCCCCCcccCCChhHHHHHHHHHH------------
Q 005499 192 DALAAYRRAVLSQWNLDNECCARIQKRFAVFLLHSGVEAGPPSLGSQVEGSYAPKNNLEEAILLLLIL------------ 259 (693)
Q Consensus 192 ~A~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~------------ 259 (693)
+|.+.-+.- |...........|..+ -.+++++.|+..+...
T Consensus 844 eA~eiAE~~-------DRiHLr~Tyy~yA~~L--------------------ear~Di~~AleyyEK~~~hafev~rmL~ 896 (1416)
T KOG3617|consen 844 EAFEIAETK-------DRIHLRNTYYNYAKYL--------------------EARRDIEAALEYYEKAGVHAFEVFRMLK 896 (1416)
T ss_pred HHHHHHhhc-------cceehhhhHHHHHHHH--------------------HhhccHHHHHHHHHhcCChHHHHHHHHH
Confidence 554322110 1101000111111111 1111222222222111
Q ss_pred -----HHHHhhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhh
Q 005499 260 -----MKKYHLGKIKWDPAVMEHLTYALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDAALNLLRKSLH 334 (693)
Q Consensus 260 -----~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 334 (693)
+...+ +...++.+|...|..+-..|+.+.|+.+|+.+ .-|+.+....+-+|+.++|-.+-++
T Consensus 897 e~p~~~e~Yv--~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A--------~D~fs~VrI~C~qGk~~kAa~iA~e--- 963 (1416)
T KOG3617|consen 897 EYPKQIEQYV--RRKRDESLYSWWGQYLESVGEMDAALSFYSSA--------KDYFSMVRIKCIQGKTDKAARIAEE--- 963 (1416)
T ss_pred hChHHHHHHH--HhccchHHHHHHHHHHhcccchHHHHHHHHHh--------hhhhhheeeEeeccCchHHHHHHHh---
Confidence 00111 01256788888888888899999999998865 3578888888889999988766554
Q ss_pred ccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhh------cCCCcchhHhHHHHHHHHHhhhhcccCChHHHhHH
Q 005499 335 KHERPNDLMALLLAAKICSEDCHLAAEGIQYARTALSNA------QGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRL 408 (693)
Q Consensus 335 ~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~ 408 (693)
..+..+.+.+|+.|-+.++.. +|+.+|.++-... ...+ + ..-+..++.. ....+.
T Consensus 964 ----sgd~AAcYhlaR~YEn~g~v~-~Av~FfTrAqafsnAIRlcKEnd--~-~d~L~nlal~-s~~~d~---------- 1024 (1416)
T KOG3617|consen 964 ----SGDKAACYHLARMYENDGDVV-KAVKFFTRAQAFSNAIRLCKEND--M-KDRLANLALM-SGGSDL---------- 1024 (1416)
T ss_pred ----cccHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHHHHHHHHHhcC--H-HHHHHHHHhh-cCchhH----------
Confidence 456778888999998888888 9998887765432 1111 1 1111111111 111111
Q ss_pred HHHHHHHHHHHHhcCCCChHH-HHHHHhCCHHHHHHHHHH-----H-----HHhcCCCcHHHHHHHHHHHHHcCChHHHH
Q 005499 409 QSEALKSLDGASTFENNNADL-FFDLEQRNLSTALRYAKQ-----Y-----IDATGGSVLKGWKLLALVLSAQQRFSEAE 477 (693)
Q Consensus 409 ~~~A~~~~~~al~~~p~~~~~-~~~l~~~~~~~A~~~~~~-----a-----l~~~p~~~~~~~~~la~~~~~~g~~~~A~ 477 (693)
-.|.++|+..- ..-..+ ..+-+.|.+.+|++..-+ + -.++|+.....+..-++.+....+|++|.
T Consensus 1025 -v~aArYyEe~g---~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV 1100 (1416)
T KOG3617|consen 1025 -VSAARYYEELG---GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAV 1100 (1416)
T ss_pred -HHHHHHHHHcc---hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHH
Confidence 33444444321 010111 111145555555554321 1 12355544366777788888888888887
Q ss_pred HHHHHH------Hhh----------------cCCC-------CchHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 005499 478 VVTDAA------LDE----------------TTKW-------EQGPILRLKAKLKIAQALPMDAIETYRYLLAL 522 (693)
Q Consensus 478 ~~~~~a------l~~----------------~p~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 522 (693)
.++-.+ +.+ .|.- ....++..+|.++.++|.|..|-+-|.++-..
T Consensus 1101 ~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK 1174 (1416)
T KOG3617|consen 1101 NLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK 1174 (1416)
T ss_pred HHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH
Confidence 766543 321 1110 12346788999999999999998888776544
No 150
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.91 E-value=4.4e-07 Score=99.51 Aligned_cols=219 Identities=14% Similarity=0.082 Sum_probs=194.7
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-cCCC--CchHHHHHHHHHHHHhCChhHHHHH
Q 005499 439 STALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDE-TTKW--EQGPILRLKAKLKIAQALPMDAIET 515 (693)
Q Consensus 439 ~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~--~~~~~~~~l~~~~~~~g~~~~A~~~ 515 (693)
.+..+-|.+.+..+|+.. -.|.....-+.+.++.++|.++.++++.. ++.. ....+|..+-++...-|.-+.-.+.
T Consensus 1441 pesaeDferlvrssPNSS-i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSS-ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CcCHHHHHHHHhcCCCcc-hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 344567888888999998 89999988999999999999999999873 3310 2355777777777788877888889
Q ss_pred HHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Q 005499 516 YRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCG 595 (693)
Q Consensus 516 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 595 (693)
|+++.+.. ....++..|..+|...+++++|.++|+.+++...+...+|..+|..++++.
T Consensus 1520 FeRAcqyc---------------------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~n 1578 (1710)
T KOG1070|consen 1520 FERACQYC---------------------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQN 1578 (1710)
T ss_pred HHHHHHhc---------------------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhccc
Confidence 99998874 225788999999999999999999999999999889999999999999999
Q ss_pred ChHHHHHHHHHHHhhCCC--ChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 005499 596 QTHEALRAYINALLIEPS--YVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADC 673 (693)
Q Consensus 596 ~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 673 (693)
+-+.|...+.+|+..-|. |.......|.+-++.|+.+ .++..|+-.+..+|.-.+.|.-+...-...|+.+-++..
T Consensus 1579 e~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDae--RGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~l 1656 (1710)
T KOG1070|consen 1579 EAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAE--RGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDL 1656 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCch--hhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHH
Confidence 999999999999999998 8889999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHhcc
Q 005499 674 FQAASMLE 681 (693)
Q Consensus 674 ~~~al~l~ 681 (693)
|++++.+.
T Consensus 1657 feRvi~l~ 1664 (1710)
T KOG1070|consen 1657 FERVIELK 1664 (1710)
T ss_pred HHHHHhcC
Confidence 99999874
No 151
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=2.4e-08 Score=96.46 Aligned_cols=134 Identities=16% Similarity=0.112 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhhCCC----C-----------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 005499 548 QVWHGLANLYSGLSHWKDVAICMGKARELKAY----S-----------AEMLHTEGVMHEGCGQTHEALRAYINALLIEP 612 (693)
Q Consensus 548 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 612 (693)
......|..+++.|+|..|...|++++..-.. + ..++.+++.|+.++++|.+|+....++|.++|
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~ 288 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP 288 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 44556799999999999999999998875331 1 24688999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHH-HHHHHHHHhcccC
Q 005499 613 SYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADA-ADCFQAASMLEES 683 (693)
Q Consensus 613 ~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A-~~~~~~al~l~p~ 683 (693)
+|..+++..|.++..+|+++ .|+..|+++++++|.|..+...+..+-.+..++.+. .+.|.+++...+.
T Consensus 289 ~N~KALyRrG~A~l~~~e~~--~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~ 358 (397)
T KOG0543|consen 289 NNVKALYRRGQALLALGEYD--LARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAE 358 (397)
T ss_pred CchhHHHHHHHHHHhhccHH--HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999 999999999999999999999998888877776654 7889988886553
No 152
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.89 E-value=8.7e-05 Score=74.34 Aligned_cols=403 Identities=14% Similarity=0.033 Sum_probs=227.8
Q ss_pred hcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHH
Q 005499 265 LGKIKWDPAVMEHLTYALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMA 344 (693)
Q Consensus 265 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~ 344 (693)
+..+|.|...|+.|..-+... .++++.+.+|+.+...|..+..|...+...++..+|+.-..+|.+++....+ ...
T Consensus 13 ie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn---lDL 88 (656)
T KOG1914|consen 13 IEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN---LDL 88 (656)
T ss_pred HhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh---HhH
Confidence 456799999999887766555 9999999999999999999999999999999999999999999999986422 333
Q ss_pred HHHH-HHHHHhcCCcHHHHHH----HHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHH
Q 005499 345 LLLA-AKICSEDCHLAAEGIQ----YARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGA 419 (693)
Q Consensus 345 ~~~~-a~~~~~~~~~~~~A~~----~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 419 (693)
|.+. .-+--..+... .+.. .++-++....-.... ...|.-.+..+-. -.+...-+..+..+.-.+.|++|
T Consensus 89 W~lYl~YVR~~~~~~~-~~r~~m~qAy~f~l~kig~di~s--~siW~eYi~FL~~--vea~gk~ee~QRI~~vRriYqra 163 (656)
T KOG1914|consen 89 WKLYLSYVRETKGKLF-GYREKMVQAYDFALEKIGMDIKS--YSIWDEYINFLEG--VEAVGKYEENQRITAVRRIYQRA 163 (656)
T ss_pred HHHHHHHHHHHccCcc-hHHHHHHHHHHHHHHHhccCccc--chhHHHHHHHHHc--ccccccHHHHHHHHHHHHHHHHH
Confidence 3322 22222222222 2222 222233222211111 2223333222111 11111112222336667788888
Q ss_pred HhcCCCChH-HHHHH------------------HhCCHHHHHHHHHHHHHhc-------CC----Cc------HHHHHHH
Q 005499 420 STFENNNAD-LFFDL------------------EQRNLSTALRYAKQYIDAT-------GG----SV------LKGWKLL 463 (693)
Q Consensus 420 l~~~p~~~~-~~~~l------------------~~~~~~~A~~~~~~al~~~-------p~----~~------~~~~~~l 463 (693)
+...-.+.+ .|... ....|..|...+++...+. |. .. .+.|.++
T Consensus 164 l~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~ 243 (656)
T KOG1914|consen 164 LVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNW 243 (656)
T ss_pred hcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHH
Confidence 765433332 22222 3344555666555554321 10 00 0112222
Q ss_pred HHHHHHc------CCh--HHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCC--------------hhHHHHHHHHHHH
Q 005499 464 ALVLSAQ------QRF--SEAEVVTDAALDETTKWEQGPILRLKAKLKIAQAL--------------PMDAIETYRYLLA 521 (693)
Q Consensus 464 a~~~~~~------g~~--~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~~l~ 521 (693)
...-... |.. ..-.-.+++++..-+ -.+.+|+.-+..+...++ .+++..+|++++.
T Consensus 244 I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~--~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~ 321 (656)
T KOG1914|consen 244 IKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLG--YHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIE 321 (656)
T ss_pred HHHHhcCCcccccccHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 2111111 111 122233444444444 344555444443333333 4455555555554
Q ss_pred HHHhhhhhcCCc---------------------ccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCC
Q 005499 522 LVQAQRKSFGPL---------------------RCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYS 580 (693)
Q Consensus 522 ~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 580 (693)
..-.....+... .++.......+ .-+|..+-+.-.+..-.+.|..+|.++-+.....
T Consensus 322 ~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~--tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~ 399 (656)
T KOG1914|consen 322 GLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL--TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTR 399 (656)
T ss_pred HHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC--ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCc
Confidence 322111000000 00000001111 2345555555566666788888888887654333
Q ss_pred HHHHHHHHHH-HHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhh--CCC-CHHHHHH
Q 005499 581 AEMLHTEGVM-HEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRI--EPT-NRKAWYY 656 (693)
Q Consensus 581 ~~~~~~lg~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~--~p~-~~~~~~~ 656 (693)
..++..-|.+ |...++.+-|...|+-.++..++.+.........+..+++-. .|+.+|++++.. .|+ ...+|..
T Consensus 400 hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~--N~R~LFEr~l~s~l~~~ks~~Iw~r 477 (656)
T KOG1914|consen 400 HHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDN--NARALFERVLTSVLSADKSKEIWDR 477 (656)
T ss_pred chhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcch--hHHHHHHHHHhccCChhhhHHHHHH
Confidence 3444433333 456789999999999999999999888888888888999988 999999999986 333 3478888
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhccc
Q 005499 657 LGLVHKDDGRIADAADCFQAASMLEE 682 (693)
Q Consensus 657 lg~~~~~~g~~~~A~~~~~~al~l~p 682 (693)
+-..-..-|+....++.=++-....|
T Consensus 478 ~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 478 MLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 88888888998888877766666555
No 153
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.88 E-value=8.3e-09 Score=75.89 Aligned_cols=64 Identities=20% Similarity=0.200 Sum_probs=45.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCCh
Q 005499 552 GLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYV 615 (693)
Q Consensus 552 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 615 (693)
.+|..+...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4566777777777777777777777777777777777777777777777777777777777653
No 154
>PRK11906 transcriptional regulator; Provisional
Probab=98.88 E-value=3.2e-08 Score=98.11 Aligned_cols=120 Identities=17% Similarity=0.164 Sum_probs=106.2
Q ss_pred hHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHHC---------CChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCC
Q 005499 563 WKDVAICMGKAR---ELKAYSAEMLHTEGVMHEGC---------GQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGP 630 (693)
Q Consensus 563 ~~~A~~~~~~al---~~~p~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 630 (693)
.+.|+.+|.+++ .++|+.+.++..++.++... ....+|....+++++++|.++.++..+|.+....++
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Confidence 467888999999 88999999988888887654 235678888899999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCC
Q 005499 631 KALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASMLEESD 684 (693)
Q Consensus 631 ~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 684 (693)
++ .|...|++++.++|+.+.+|+..|++....|+.++|++.++++++++|.-
T Consensus 354 ~~--~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 354 AK--VSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred hh--hHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence 88 99999999999999999999999999999999999999999999998853
No 155
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.87 E-value=1.1e-05 Score=77.30 Aligned_cols=286 Identities=13% Similarity=0.001 Sum_probs=204.3
Q ss_pred HHHHHhcCCHHHHHHHHHhhcCCCCCcHH--HHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHHHHHH-Hhc
Q 005499 279 TYALSLCSQTSILAKQLEEIMPGVFLRSD--RWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLAAKIC-SED 355 (693)
Q Consensus 279 ~~~~~~~g~~~~a~~~~e~~l~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~-~~~ 355 (693)
|++-...|+-..|.++-.+.-+....+.+ ++..-+..-.-.|+++.|.+-|+.++. +|+.-..-+.--.+. ...
T Consensus 91 GliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~ 167 (531)
T COG3898 91 GLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRL 167 (531)
T ss_pred hhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhc
Confidence 34445567777777777766544333333 445557888889999999999999987 465332211111122 234
Q ss_pred CCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhc---CCCChHH---
Q 005499 356 CHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTF---ENNNADL--- 429 (693)
Q Consensus 356 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~--- 429 (693)
|... .|..+..++....| .- .+++...-...+..|++ +.|++..+..... .++-.+-
T Consensus 168 Gare-aAr~yAe~Aa~~Ap---~l--~WA~~AtLe~r~~~gdW-----------d~AlkLvd~~~~~~vie~~~aeR~rA 230 (531)
T COG3898 168 GARE-AARHYAERAAEKAP---QL--PWAARATLEARCAAGDW-----------DGALKLVDAQRAAKVIEKDVAERSRA 230 (531)
T ss_pred ccHH-HHHHHHHHHHhhcc---CC--chHHHHHHHHHHhcCCh-----------HHHHHHHHHHHHHHhhchhhHHHHHH
Confidence 4444 88999999998887 33 77787777888889999 9999988876532 2322211
Q ss_pred -HHHH-----HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHH
Q 005499 430 -FFDL-----EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLK 503 (693)
Q Consensus 430 -~~~l-----~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 503 (693)
+..- ...+...|.....+++++.|+.. .+-..-+..++..|+..++-.+++.+.+..| ++.+ +.+|
T Consensus 231 vLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlv-Paav~AAralf~d~~~rKg~~ilE~aWK~eP---HP~i----a~lY 302 (531)
T COG3898 231 VLLTAKAMSLLDADPASARDDALEANKLAPDLV-PAAVVAARALFRDGNLRKGSKILETAWKAEP---HPDI----ALLY 302 (531)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCccc-hHHHHHHHHHHhccchhhhhhHHHHHHhcCC---ChHH----HHHH
Confidence 1111 44567888889999999999988 8888889999999999999999999999888 4443 3445
Q ss_pred HHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHH
Q 005499 504 IAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEM 583 (693)
Q Consensus 504 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 583 (693)
....--+.++.-++++-.+. ..+|++.+..+..+..-...|++..|..--+.+....|.. .+
T Consensus 303 ~~ar~gdta~dRlkRa~~L~-----------------slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~ 364 (531)
T COG3898 303 VRARSGDTALDRLKRAKKLE-----------------SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SA 364 (531)
T ss_pred HHhcCCCcHHHHHHHHHHHH-----------------hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hH
Confidence 55544556677777776665 3336778888889999999999999998888888888764 45
Q ss_pred HHHHHHHHHHC-CChHHHHHHHHHHHhh
Q 005499 584 LHTEGVMHEGC-GQTHEALRAYINALLI 610 (693)
Q Consensus 584 ~~~lg~~~~~~-g~~~~A~~~~~~al~~ 610 (693)
+..++.+.... |+-.+...++-++++-
T Consensus 365 ~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 365 YLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 55667776655 9999999999998873
No 156
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.87 E-value=1.6e-06 Score=81.83 Aligned_cols=322 Identities=16% Similarity=0.039 Sum_probs=209.8
Q ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHH----HHHHHHHhcCCcHHHHHHHHHHHHHhhcC-CCcchhH
Q 005499 308 RWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALL----LAAKICSEDCHLAAEGIQYARTALSNAQG-KDEHLKG 382 (693)
Q Consensus 308 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~----~~a~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~ 382 (693)
..+.-|.-++...++++|+....+.+... ++....+ .+..+....+.+. +++.+.-..++...+ .+..+..
T Consensus 8 ~q~~~g~~Ly~s~~~~~al~~w~~~L~~l---~~~~~Rf~~lG~l~~a~s~~g~y~-~mL~~a~sqi~~a~~~~ds~~~~ 83 (518)
T KOG1941|consen 8 KQIEKGLQLYQSNQTEKALQVWTKVLEKL---SDLMGRFRVLGCLVTAHSEMGRYK-EMLKFAVSQIDTARELEDSDFLL 83 (518)
T ss_pred HHHHHHHhHhcCchHHHHHHHHHHHHHHH---HHHHHHHHHhccchhhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777888888888887777642 2222111 1222333344333 444433333222211 1123446
Q ss_pred hHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChHHHHHHHhCCHHHHHHHHHHHHHhcCCCcHHHHHH
Q 005499 383 VGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNADLFFDLEQRNLSTALRYAKQYIDATGGSVLKGWKL 462 (693)
Q Consensus 383 ~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 462 (693)
.++..++..+....++ .+++.+-+..+.+....+ ..... .+...
T Consensus 84 ea~lnlar~~e~l~~f-----------~kt~~y~k~~l~lpgt~~------------------------~~~~g-q~~l~ 127 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEF-----------HKTISYCKTCLGLPGTRA------------------------GQLGG-QVSLS 127 (518)
T ss_pred HHHHHHHHHHHHHHHh-----------hhHHHHHHHHhcCCCCCc------------------------ccccc-hhhhh
Confidence 6777777777777666 667666655554433222 11112 55667
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhcCCCC----chHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhh-hhcCCccccc
Q 005499 463 LALVLSAQQRFSEAEVVTDAALDETTKWE----QGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQR-KSFGPLRCLS 537 (693)
Q Consensus 463 la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~-~~~~~~~~~~ 537 (693)
++..+..++.++++++.|+.++......+ ...++..+|.++....++++|.-+..++.++..... ..|..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~----- 202 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL----- 202 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH-----
Confidence 89999999999999999999998654111 234678999999999999999999999998864332 00000
Q ss_pred chhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 005499 538 QIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELK------AYSAEMLHTEGVMHEGCGQTHEALRAYINALLIE 611 (693)
Q Consensus 538 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 611 (693)
.....+++.++..+..+|+.-.|.++.+++.++. +-.+.....+|.+|...|+.+.|..-|+.+....
T Consensus 203 ------kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 203 ------KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred ------HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 1235677889999999999999999999998763 2334567789999999999999999999998753
Q ss_pred CC------ChhHHHHHHHHHHHhCCCC---hHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 005499 612 PS------YVPCKVLVGSLFSKLGPKA---LPVARSLLSDALRIEPT------NRKAWYYLGLVHKDDGRIADAADCFQA 676 (693)
Q Consensus 612 p~------~~~~~~~la~~~~~~g~~~---l~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~ 676 (693)
.. ...++...+.++....-.. ==.|+++-++.+++... --..+..++.+|..+|.-++=.+.+.+
T Consensus 277 ~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~r 356 (518)
T KOG1941|consen 277 ASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVR 356 (518)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 22 2345666666655443322 00377777777775432 135677899999999998887777776
Q ss_pred HHhc
Q 005499 677 ASML 680 (693)
Q Consensus 677 al~l 680 (693)
+-+.
T Consensus 357 a~~~ 360 (518)
T KOG1941|consen 357 AHEC 360 (518)
T ss_pred HHHH
Confidence 6543
No 157
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.87 E-value=4e-07 Score=85.80 Aligned_cols=315 Identities=17% Similarity=0.125 Sum_probs=202.4
Q ss_pred HHHHHhcCCHHHHHHHHHhhcCCC---CCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCC----CHHHHHHHHHH
Q 005499 279 TYALSLCSQTSILAKQLEEIMPGV---FLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPN----DLMALLLAAKI 351 (693)
Q Consensus 279 ~~~~~~~g~~~~a~~~~e~~l~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~----~~~~~~~~a~~ 351 (693)
|..+..+.++++++....+.+... .+....+-.+..+...+|.|++++..--..++...+-+ ...+++.+++.
T Consensus 13 g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~ 92 (518)
T KOG1941|consen 13 GLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARS 92 (518)
T ss_pred HHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666555544322 12233444556777888888877665433333211111 22344445544
Q ss_pred HHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChHHHH
Q 005499 352 CSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNADLFF 431 (693)
Q Consensus 352 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 431 (693)
.....++. +++.+-+..+..........-......+|.++...+.+ +++++.|++|+....++.
T Consensus 93 ~e~l~~f~-kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~f-----------q~~Lesfe~A~~~A~~~~---- 156 (518)
T KOG1941|consen 93 NEKLCEFH-KTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVF-----------QKALESFEKALRYAHNND---- 156 (518)
T ss_pred HHHHHHhh-hHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHH-----------HHHHHHHHHHHHHhhccC----
Confidence 44444444 66666666665433222233356777889999999999 999999999986644333
Q ss_pred HHHhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCC--C------chHHHHHHHHHH
Q 005499 432 DLEQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKW--E------QGPILRLKAKLK 503 (693)
Q Consensus 432 ~l~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~------~~~~~~~l~~~~ 503 (693)
+|--...++..+|.++...+++++|+-+..++.++...+ + ..-+++.++..+
T Consensus 157 --------------------D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaVal 216 (518)
T KOG1941|consen 157 --------------------DAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVAL 216 (518)
T ss_pred --------------------CceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHH
Confidence 111111567888999999999999998888887764311 1 123567888889
Q ss_pred HHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCC----
Q 005499 504 IAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAY---- 579 (693)
Q Consensus 504 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---- 579 (693)
..+|+.-.|.++.+++.++.-.. .+.+........+|++|...|+.+.|..-|+.+......
T Consensus 217 R~~G~LgdA~e~C~Ea~klal~~--------------Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdr 282 (518)
T KOG1941|consen 217 RLLGRLGDAMECCEEAMKLALQH--------------GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDR 282 (518)
T ss_pred HHhcccccHHHHHHHHHHHHHHh--------------CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhh
Confidence 99999999999999998876444 344666788889999999999999999999998765321
Q ss_pred --CHHHHHHHHHHHHHCCCh-----HHHHHHHHHHHhhCCC----C--hhHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q 005499 580 --SAEMLHTEGVMHEGCGQT-----HEALRAYINALLIEPS----Y--VPCKVLVGSLFSKLGPKALPVARSLLSDALR 645 (693)
Q Consensus 580 --~~~~~~~lg~~~~~~g~~-----~~A~~~~~~al~~~p~----~--~~~~~~la~~~~~~g~~~l~~A~~~~~~al~ 645 (693)
...++...+.++....-. -.|++.-++++++... . ...+..++.+|...|..+ +=...+.++-+
T Consensus 283 mgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d--~~~~h~~ra~~ 359 (518)
T KOG1941|consen 283 MGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQD--ELRAHVVRAHE 359 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchh--HHHHHHHHHHH
Confidence 233444455554433322 3478877777776432 1 246778899998888877 66666555443
No 158
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.86 E-value=3.4e-09 Score=82.51 Aligned_cols=81 Identities=21% Similarity=0.335 Sum_probs=53.0
Q ss_pred CCChHHHHHHHHHHHhhCCC--ChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHH
Q 005499 594 CGQTHEALRAYINALLIEPS--YVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAA 671 (693)
Q Consensus 594 ~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 671 (693)
+|++++|+..|+++++.+|. +...++.+|.++.+.|+++ +|+..+++ ...+|.++..++.+|.++..+|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~--~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYE--EAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHH--HHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHH--HHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 46667777777777776664 3445566677777777766 77777766 5666666666666677777777777777
Q ss_pred HHHHHH
Q 005499 672 DCFQAA 677 (693)
Q Consensus 672 ~~~~~a 677 (693)
++|+++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 776654
No 159
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.86 E-value=1.9e-07 Score=91.54 Aligned_cols=207 Identities=18% Similarity=0.117 Sum_probs=144.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhcCCC----CchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcc
Q 005499 459 GWKLLALVLSAQQRFSEAEVVTDAALDETTKW----EQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLR 534 (693)
Q Consensus 459 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~ 534 (693)
.+...|..|...|++++|...|.++.....+. .....+...+.++... ++++|+.+|++++.+....
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~-------- 107 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA-------- 107 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc--------
Confidence 34445778888899999999999987654310 1234556666666555 9999999999999987544
Q ss_pred cccchhhhcccHHHHHHHHHHHHHhC-CChHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHHCCChHHHHHHHHHH
Q 005499 535 CLSQIEDDKVNEFQVWHGLANLYSGL-SHWKDVAICMGKARELKAY--S----AEMLHTEGVMHEGCGQTHEALRAYINA 607 (693)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~p~--~----~~~~~~lg~~~~~~g~~~~A~~~~~~a 607 (693)
+....-..++..+|.+|... |++++|+.+|+++...... . ...+..+|.++...|+|++|+..|+++
T Consensus 108 ------G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~ 181 (282)
T PF14938_consen 108 ------GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEV 181 (282)
T ss_dssp ------T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred ------CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 22234478899999999999 9999999999999987432 1 346788999999999999999999999
Q ss_pred HhhCCCC-------hhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHH--cCChHHHHHH
Q 005499 608 LLIEPSY-------VPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNR-----KAWYYLGLVHKD--DGRIADAADC 673 (693)
Q Consensus 608 l~~~p~~-------~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~-----~~~~~lg~~~~~--~g~~~~A~~~ 673 (693)
....-++ ...+...+.|++..|+.. .|...+++....+|... .....|-..+.. ...+.+|+..
T Consensus 182 ~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v--~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~ 259 (282)
T PF14938_consen 182 AKKCLENNLLKYSAKEYFLKAILCHLAMGDYV--AARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAE 259 (282)
T ss_dssp HHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HH--HHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHH
T ss_pred HHHhhcccccchhHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 8753221 134566788889999988 99999999999888542 233344444433 3347777777
Q ss_pred HHHHHhccc
Q 005499 674 FQAASMLEE 682 (693)
Q Consensus 674 ~~~al~l~p 682 (693)
|.+.-.++|
T Consensus 260 ~d~~~~ld~ 268 (282)
T PF14938_consen 260 YDSISRLDN 268 (282)
T ss_dssp HTTSS---H
T ss_pred HcccCccHH
Confidence 776555543
No 160
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.86 E-value=1.2e-08 Score=79.51 Aligned_cols=83 Identities=20% Similarity=0.164 Sum_probs=61.3
Q ss_pred hCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHH
Q 005499 506 QALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLH 585 (693)
Q Consensus 506 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 585 (693)
+|++++|+..++++++..|.+ + +...++.+|.++++.|++++|+.++++ ...+|.++...+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~-----------------~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~ 62 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTN-----------------P-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHY 62 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGT-----------------H-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCC-----------------h-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHH
Confidence 577888888888888877532 1 356677788888888888888888887 777777777777
Q ss_pred HHHHHHHHCCChHHHHHHHHHH
Q 005499 586 TEGVMHEGCGQTHEALRAYINA 607 (693)
Q Consensus 586 ~lg~~~~~~g~~~~A~~~~~~a 607 (693)
.+|.++..+|++++|+..|+++
T Consensus 63 l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 63 LLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHhcC
Confidence 7788888888888888887764
No 161
>PRK15331 chaperone protein SicA; Provisional
Probab=98.85 E-value=1.1e-08 Score=86.94 Aligned_cols=107 Identities=9% Similarity=-0.035 Sum_probs=90.2
Q ss_pred hcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHH
Q 005499 542 DKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLV 621 (693)
Q Consensus 542 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 621 (693)
..+...+..+..|.-+...|++++|...|+-....+|.++..|..||.++..+++|++|+..|..+..++++++...+..
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a 111 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT 111 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence 33445677788888888899999999999888888888888899999999999999999999999888888888888899
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHhhCCCCH
Q 005499 622 GSLFSKLGPKALPVARSLLSDALRIEPTNR 651 (693)
Q Consensus 622 a~~~~~~g~~~l~~A~~~~~~al~~~p~~~ 651 (693)
|.|+..+|+.+ .|+..|..++. .|.+.
T Consensus 112 gqC~l~l~~~~--~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 112 GQCQLLMRKAA--KARQCFELVNE-RTEDE 138 (165)
T ss_pred HHHHHHhCCHH--HHHHHHHHHHh-CcchH
Confidence 99999999888 89998888887 45543
No 162
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.84 E-value=1.5e-06 Score=83.74 Aligned_cols=194 Identities=23% Similarity=0.225 Sum_probs=92.9
Q ss_pred HhCCHHHHHHHHHHHHH--hcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHH-HHHHhCChh
Q 005499 434 EQRNLSTALRYAKQYID--ATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAK-LKIAQALPM 510 (693)
Q Consensus 434 ~~~~~~~A~~~~~~al~--~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~-~~~~~g~~~ 510 (693)
..+++..+...+...+. ..+... ..+...+..+...+++..++..+..++...+ .........+. ++...|+++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 147 (291)
T COG0457 71 KLGRLEEALELLEKALELELLPNLA-EALLNLGLLLEALGKYEEALELLEKALALDP--DPDLAEALLALGALYELGDYE 147 (291)
T ss_pred HcccHHHHHHHHHHHHhhhhccchH-HHHHHHHHHHHHHhhHHHHHHHHHHHHcCCC--CcchHHHHHHHHHHHHcCCHH
Confidence 44555555555555554 334333 4455555555555555555555555555444 22222333333 455555555
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCC-CHHHHHHHHH
Q 005499 511 DAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAY-SAEMLHTEGV 589 (693)
Q Consensus 511 ~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 589 (693)
.|...+.+++...|. ...........+..+...+++++++..+.+++...+. ....+..++.
T Consensus 148 ~a~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 210 (291)
T COG0457 148 EALELYEKALELDPE-----------------LNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGL 210 (291)
T ss_pred HHHHHHHHHHhcCCC-----------------ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhH
Confidence 555555555332110 0122333333444444455555555555555555555 3455555555
Q ss_pred HHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCC
Q 005499 590 MHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPT 649 (693)
Q Consensus 590 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~ 649 (693)
.+...+++++|+..+..++...|.....+..++..+...+..+ ++...+.+++...|.
T Consensus 211 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 268 (291)
T COG0457 211 LYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYE--EALEALEKALELDPD 268 (291)
T ss_pred HHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHH--HHHHHHHHHHHhCcc
Confidence 5555555555555555555555544444444444444333334 555555555555444
No 163
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=6e-08 Score=90.56 Aligned_cols=121 Identities=18% Similarity=0.122 Sum_probs=107.4
Q ss_pred hhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 005499 509 PMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEG 588 (693)
Q Consensus 509 ~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 588 (693)
.+.-+.-++.-+..+ |.+.+-|..||.+|..+|++..|...|.+++++.|+++..+..+|
T Consensus 138 ~~~l~a~Le~~L~~n--------------------P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~a 197 (287)
T COG4235 138 MEALIARLETHLQQN--------------------PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLA 197 (287)
T ss_pred HHHHHHHHHHHHHhC--------------------CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 445555566666666 555899999999999999999999999999999999999999999
Q ss_pred HHHHHCCC---hHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCH
Q 005499 589 VMHEGCGQ---THEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNR 651 (693)
Q Consensus 589 ~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~ 651 (693)
.++..+.+ ..++...+++++..+|.++.+...||..+++.|++. +|...++..+...|.+.
T Consensus 198 eaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~--~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 198 EALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYA--EAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHH--HHHHHHHHHHhcCCCCC
Confidence 98877654 678999999999999999999999999999999999 99999999999887653
No 164
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.83 E-value=1.6e-07 Score=92.02 Aligned_cols=174 Identities=18% Similarity=0.137 Sum_probs=132.6
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005499 496 LRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARE 575 (693)
Q Consensus 496 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 575 (693)
+...|..+...+++++|.+.|.++....... .+.......+...+.++... ++++|+.+|++++.
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~--------------~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~ 102 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKL--------------GDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIE 102 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT--------------T-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHH
Confidence 4445677788899999999999998876443 22233467777888888777 99999999999998
Q ss_pred hCC--CC----HHHHHHHHHHHHHC-CChHHHHHHHHHHHhhCCC--C----hhHHHHHHHHHHHhCCCChHHHHHHHHH
Q 005499 576 LKA--YS----AEMLHTEGVMHEGC-GQTHEALRAYINALLIEPS--Y----VPCKVLVGSLFSKLGPKALPVARSLLSD 642 (693)
Q Consensus 576 ~~p--~~----~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~g~~~l~~A~~~~~~ 642 (693)
+.- +. +.++..+|.+|... |++++|+++|++++.+... . ..++..+|.++.++|+++ +|+..|++
T Consensus 103 ~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~--~A~~~~e~ 180 (282)
T PF14938_consen 103 IYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYE--EAIEIYEE 180 (282)
T ss_dssp HHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HH--HHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHH--HHHHHHHH
Confidence 732 22 45788999999999 9999999999999986321 1 356789999999999999 99999999
Q ss_pred HHhhCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCC
Q 005499 643 ALRIEPTN-------RKAWYYLGLVHKDDGRIADAADCFQAASMLEESDPI 686 (693)
Q Consensus 643 al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 686 (693)
+....-++ ...+...+.++...|+...|...|++....+|+...
T Consensus 181 ~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~ 231 (282)
T PF14938_consen 181 VAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS 231 (282)
T ss_dssp HHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT
T ss_pred HHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 98753221 134567888999999999999999999999887653
No 165
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.81 E-value=6.2e-08 Score=92.30 Aligned_cols=104 Identities=13% Similarity=0.087 Sum_probs=61.9
Q ss_pred HHHHHHHHHHH-HhCCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC---hhHHH
Q 005499 547 FQVWHGLANLY-SGLSHWKDVAICMGKARELKAYS---AEMLHTEGVMHEGCGQTHEALRAYINALLIEPSY---VPCKV 619 (693)
Q Consensus 547 ~~~~~~la~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 619 (693)
...++..+..+ ...|++++|+..|+..++.+|++ +.+++.+|.+|...|++++|+..|++++...|++ +++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34455555443 44566666666666666666655 3566666666666666666666666666555543 45566
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHH
Q 005499 620 LVGSLFSKLGPKALPVARSLLSDALRIEPTNRK 652 (693)
Q Consensus 620 ~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~ 652 (693)
.+|.++..+|+++ +|...|+++++..|++..
T Consensus 222 klg~~~~~~g~~~--~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 222 KVGVIMQDKGDTA--KAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHcCCHH--HHHHHHHHHHHHCcCCHH
Confidence 6666666666665 666666666666665543
No 166
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=5.5e-06 Score=75.36 Aligned_cols=179 Identities=16% Similarity=0.090 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccc
Q 005499 459 GWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQ 538 (693)
Q Consensus 459 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 538 (693)
....-|.++...|++++|+...... .+.++...-..++.++.+.+-|....+++.+++.+
T Consensus 110 ~~l~aa~i~~~~~~~deAl~~~~~~-------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided------------- 169 (299)
T KOG3081|consen 110 DLLLAAIIYMHDGDFDEALKALHLG-------ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED------------- 169 (299)
T ss_pred HHHHhhHHhhcCCChHHHHHHHhcc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH-------------
Confidence 3445567888899999999988762 45666777888999999999999999999887532
Q ss_pred hhhhcccHHHHHHHHHHHHH----hCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 005499 539 IEDDKVNEFQVWHGLANLYS----GLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSY 614 (693)
Q Consensus 539 ~~~~~~~~~~~~~~la~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 614 (693)
.++..||..+. ..+++.+|.-+|++.-...|..+......+.++..+|+|++|...++.++..++++
T Consensus 170 ---------~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d 240 (299)
T KOG3081|consen 170 ---------ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD 240 (299)
T ss_pred ---------HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC
Confidence 23444444443 34568999999999999889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhCCCChHHH-HHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 005499 615 VPCKVLVGSLFSKLGPKALPVA-RSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASM 679 (693)
Q Consensus 615 ~~~~~~la~~~~~~g~~~l~~A-~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 679 (693)
++++.++..+-...|... ++ .+.+.+.....|+++.+ .++.+...-|.++..
T Consensus 241 petL~Nliv~a~~~Gkd~--~~~~r~l~QLk~~~p~h~~v-----------k~~~ekeaeFDrl~~ 293 (299)
T KOG3081|consen 241 PETLANLIVLALHLGKDA--EVTERNLSQLKLSHPEHPFV-----------KHLNEKEAEFDRLVL 293 (299)
T ss_pred HHHHHHHHHHHHHhCCCh--HHHHHHHHHHHhcCCcchHH-----------HHHHHHHHHHHHHHH
Confidence 999999999999999886 54 45566666678887643 234455555555543
No 167
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.3e-07 Score=91.47 Aligned_cols=101 Identities=19% Similarity=0.197 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q 005499 547 FQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFS 626 (693)
Q Consensus 547 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 626 (693)
..++++++.++.++++|.+|+...++++.+.|++..++|..|.++...|+++.|+..|+++++++|++-.+...+..+..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HhCCCChHHHHHHHHHHHhhCC
Q 005499 627 KLGPKALPVARSLLSDALRIEP 648 (693)
Q Consensus 627 ~~g~~~l~~A~~~~~~al~~~p 648 (693)
+..++. +...++|.+++...+
T Consensus 337 k~~~~~-~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 337 KIREYE-EKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHH-HHHHHHHHHHhhccc
Confidence 877665 356888988887544
No 168
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.78 E-value=0.0003 Score=74.97 Aligned_cols=230 Identities=14% Similarity=0.049 Sum_probs=149.3
Q ss_pred CCChhHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHCCCcHH
Q 005499 245 PKNNLEEAILLLLILMKKYHLGKIKWDPAVMEHLTYALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDA 324 (693)
Q Consensus 245 ~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~ 324 (693)
..+++.+|+..+ ...+.++|+.+.+.-.-+..+.+.|..++|..++|..-...+++..+.-.+-.||...|++++
T Consensus 21 d~~qfkkal~~~-----~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 21 DSSQFKKALAKL-----GKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhHHHHHHHHHH-----HHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhH
Confidence 356777777655 466778899888888888999999999999999987766666677788889999999999999
Q ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCChHH
Q 005499 325 ALNLLRKSLHKHERPNDLMALLLAAKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYE 404 (693)
Q Consensus 325 A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~ 404 (693)
|..+|++++. ..|+ ...+..+-..+.+.+.+. +-.+..-+..+..|+.. -..|..+.... ++..+.....
T Consensus 96 ~~~~Ye~~~~--~~P~-eell~~lFmayvR~~~yk-~qQkaa~~LyK~~pk~~----yyfWsV~Slil--qs~~~~~~~~ 165 (932)
T KOG2053|consen 96 AVHLYERANQ--KYPS-EELLYHLFMAYVREKSYK-KQQKAALQLYKNFPKRA----YYFWSVISLIL--QSIFSENELL 165 (932)
T ss_pred HHHHHHHHHh--hCCc-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCccc----chHHHHHHHHH--HhccCCcccc
Confidence 9999999999 4588 444333333344444443 22223333333455332 12233333222 2222212122
Q ss_pred HhHHHHHHHHHHHHHHhcC-CCC--hHHHHHH----HhCCHHHHHHHHHHH-HHhc-CCCcHHHHHHHHHHHHHcCChHH
Q 005499 405 RSRLQSEALKSLDGASTFE-NNN--ADLFFDL----EQRNLSTALRYAKQY-IDAT-GGSVLKGWKLLALVLSAQQRFSE 475 (693)
Q Consensus 405 ~~~~~~~A~~~~~~al~~~-p~~--~~~~~~l----~~~~~~~A~~~~~~a-l~~~-p~~~~~~~~~la~~~~~~g~~~~ 475 (693)
..-...-|...+++.+... +-. .+...++ .+|.+++|...+..- .+.. +.+. ..-......+...++|.+
T Consensus 166 ~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~-~l~~~~~dllk~l~~w~~ 244 (932)
T KOG2053|consen 166 DPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANL-YLENKKLDLLKLLNRWQE 244 (932)
T ss_pred cchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccch-HHHHHHHHHHHHhcChHH
Confidence 2333455677777777665 322 2222222 889999999998433 3333 3333 444556677888899999
Q ss_pred HHHHHHHHHhhcCCCCc
Q 005499 476 AEVVTDAALDETTKWEQ 492 (693)
Q Consensus 476 A~~~~~~al~~~p~~~~ 492 (693)
-.++..+++...+ ++
T Consensus 245 l~~l~~~Ll~k~~--Dd 259 (932)
T KOG2053|consen 245 LFELSSRLLEKGN--DD 259 (932)
T ss_pred HHHHHHHHHHhCC--cc
Confidence 9999999999888 55
No 169
>PRK15331 chaperone protein SicA; Provisional
Probab=98.76 E-value=1.3e-07 Score=80.52 Aligned_cols=113 Identities=12% Similarity=0.083 Sum_probs=103.3
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCC
Q 005499 570 MGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPT 649 (693)
Q Consensus 570 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~ 649 (693)
+..+..+.++..+..+..|.-+...|++++|...|+-....+|.+++.|..||.++..+++++ +|+..|..+..++++
T Consensus 26 lk~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~--~Ai~~Y~~A~~l~~~ 103 (165)
T PRK15331 26 LKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQ--KACDLYAVAFTLLKN 103 (165)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcccC
Confidence 344556667777888999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCC
Q 005499 650 NRKAWYYLGLVHKDDGRIADAADCFQAASMLEESDP 685 (693)
Q Consensus 650 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 685 (693)
+|...+..|.++..+|+.++|+.+|+.++. .|.++
T Consensus 104 dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 104 DYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred CCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchH
Confidence 999999999999999999999999999998 35544
No 170
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.76 E-value=1.9e-07 Score=88.93 Aligned_cols=105 Identities=17% Similarity=0.198 Sum_probs=95.0
Q ss_pred CHHHHHHHHHHH-HHCCChHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCC---HH
Q 005499 580 SAEMLHTEGVMH-EGCGQTHEALRAYINALLIEPSY---VPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTN---RK 652 (693)
Q Consensus 580 ~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~---~~ 652 (693)
+...++..+..+ ...|++++|+..|++.++..|++ +.+++.+|.+|+..|+++ +|+..|++++...|++ ++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~--~A~~~f~~vv~~yP~s~~~~d 218 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKD--DAAYYFASVVKNYPKSPKAAD 218 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHCCCCcchhH
Confidence 456677777765 56799999999999999999998 479999999999999999 9999999999988874 78
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCC
Q 005499 653 AWYYLGLVHKDDGRIADAADCFQAASMLEESDPI 686 (693)
Q Consensus 653 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 686 (693)
+++.+|.++..+|++++|+..|+++++..|+++.
T Consensus 219 Al~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 219 AMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 9999999999999999999999999999998764
No 171
>PRK11906 transcriptional regulator; Provisional
Probab=98.76 E-value=3.2e-07 Score=91.21 Aligned_cols=163 Identities=13% Similarity=0.078 Sum_probs=129.6
Q ss_pred HHHHHHHHHHhC---ChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhC---------CCh
Q 005499 496 LRLKAKLKIAQA---LPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGL---------SHW 563 (693)
Q Consensus 496 ~~~l~~~~~~~g---~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---------~~~ 563 (693)
.+..|......+ ..+.|+.+|.+++...+.+ |....++..++.+++.. ...
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ld-----------------p~~a~a~~~lA~~h~~~~~~g~~~~~~~~ 320 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQ-----------------TLKTECYCLLAECHMSLALHGKSELELAA 320 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCC-----------------cccHHHHHHHHHHHHHHHHhcCCCchHHH
Confidence 355666555554 3467888999999332222 44467777777776543 345
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 005499 564 KDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDA 643 (693)
Q Consensus 564 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~a 643 (693)
.+|....+++++++|.++.++..+|.+....++++.|+..|++++.++|+.+.+++..|.+..-.|+.+ +|.+.++++
T Consensus 321 ~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~--~a~~~i~~a 398 (458)
T PRK11906 321 QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIE--EARICIDKS 398 (458)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHH--HHHHHHHHH
Confidence 678899999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HhhCCCCHHHHHHHHHH-HHHcCChHHHHHHHHHH
Q 005499 644 LRIEPTNRKAWYYLGLV-HKDDGRIADAADCFQAA 677 (693)
Q Consensus 644 l~~~p~~~~~~~~lg~~-~~~~g~~~~A~~~~~~a 677 (693)
++++|.-..+-...-++ .+-....++|+..|-+-
T Consensus 399 lrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (458)
T PRK11906 399 LQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKE 433 (458)
T ss_pred hccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhc
Confidence 99999876554444444 44455678888877654
No 172
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.76 E-value=3.7e-07 Score=96.01 Aligned_cols=144 Identities=15% Similarity=0.005 Sum_probs=94.1
Q ss_pred hcCCCcHHHH--HHHHHHHHHcCC---hHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChh--------HHHHHHH
Q 005499 451 ATGGSVLKGW--KLLALVLSAQQR---FSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPM--------DAIETYR 517 (693)
Q Consensus 451 ~~p~~~~~~~--~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~ 517 (693)
..|.+. .+| +..|.-+...++ ...|+.+|+++++.+| ++..++-.++.++.....+. .+.+...
T Consensus 332 ~~~~~~-~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP--~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQG-AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEP--DFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 345554 554 455555555443 7789999999999999 78888887777765543222 2222223
Q ss_pred HHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCh
Q 005499 518 YLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQT 597 (693)
Q Consensus 518 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 597 (693)
+++... ..+..+.++..+|..+...|++++|...+++++.++| +..++..+|.++...|++
T Consensus 409 ~a~al~------------------~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~ 469 (517)
T PRK10153 409 NIVALP------------------ELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDN 469 (517)
T ss_pred Hhhhcc------------------cCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCH
Confidence 322220 0133356666677777777777777777777777777 466777777777777777
Q ss_pred HHHHHHHHHHHhhCCCChh
Q 005499 598 HEALRAYINALLIEPSYVP 616 (693)
Q Consensus 598 ~~A~~~~~~al~~~p~~~~ 616 (693)
++|+..|++++.++|.++.
T Consensus 470 ~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 470 RLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHHHhcCCCCch
Confidence 7777777777777777663
No 173
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.75 E-value=1.7e-06 Score=79.13 Aligned_cols=156 Identities=10% Similarity=-0.114 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCch---HHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcc
Q 005499 458 KGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQG---PILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLR 534 (693)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~ 534 (693)
..|+.-|....+.|++++|...|+.+...+| ..+ .+...++..+.+.+++++|+...++.+..+|.+
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p--~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~-------- 104 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHP--FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTH-------- 104 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC--------
Confidence 5566666666666666666666666666666 332 245566666666666666666666666666655
Q ss_pred cccchhhhcccHHHHHHHHHHHHHhCC--------ChHHHHHHHHHHHhhCCCCHHH-----------------HHHHHH
Q 005499 535 CLSQIEDDKVNEFQVWHGLANLYSGLS--------HWKDVAICMGKARELKAYSAEM-----------------LHTEGV 589 (693)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~la~~~~~~~--------~~~~A~~~~~~al~~~p~~~~~-----------------~~~lg~ 589 (693)
|+..-+++..|.+++..= -..+|...|+..+...|++.-+ -..+|.
T Consensus 105 ---------~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~Iar 175 (254)
T COG4105 105 ---------PNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIAR 175 (254)
T ss_pred ---------CChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555565554321 1234555556666666654211 123444
Q ss_pred HHHHCCChHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHHhCCCC
Q 005499 590 MHEGCGQTHEALRAYINALLIEPSY---VPCKVLVGSLFSKLGPKA 632 (693)
Q Consensus 590 ~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~ 632 (693)
.|.+.|.+..|+.-++.+++..|+. .+++..+..+|..+|-.+
T Consensus 176 yY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~ 221 (254)
T COG4105 176 YYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTD 221 (254)
T ss_pred HHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChH
Confidence 5555555555555555555544332 234444455555555544
No 174
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.71 E-value=7.8e-05 Score=71.60 Aligned_cols=288 Identities=14% Similarity=0.042 Sum_probs=202.6
Q ss_pred HHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChH-HH
Q 005499 352 CSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNAD-LF 430 (693)
Q Consensus 352 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~ 430 (693)
....|+-. .|.+...+.-+...+ +.. +-.+.+-+..-...|++ +.|.+-|+.++. +|..-. -+
T Consensus 94 AagAGda~-lARkmt~~~~~llss-Dqe--pLIhlLeAQaal~eG~~-----------~~Ar~kfeAMl~-dPEtRllGL 157 (531)
T COG3898 94 AAGAGDAS-LARKMTARASKLLSS-DQE--PLIHLLEAQAALLEGDY-----------EDARKKFEAMLD-DPETRLLGL 157 (531)
T ss_pred hhccCchH-HHHHHHHHHHhhhhc-cch--HHHHHHHHHHHHhcCch-----------HHHHHHHHHHhc-ChHHHHHhH
Confidence 33444444 555555555543331 122 55666666777777888 888888887763 333211 11
Q ss_pred HHH-----HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCC-Cc-----hHHHHHH
Q 005499 431 FDL-----EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKW-EQ-----GPILRLK 499 (693)
Q Consensus 431 ~~l-----~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~-----~~~~~~l 499 (693)
..+ ..|+.+.|+.+.+.+-...|.-+ .++...-...+..|+++.|+++.+......--. +. ...+...
T Consensus 158 RgLyleAqr~GareaAr~yAe~Aa~~Ap~l~-WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAk 236 (531)
T COG3898 158 RGLYLEAQRLGAREAARHYAERAAEKAPQLP-WAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAK 236 (531)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhccCCc-hHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Confidence 111 78999999999999999999888 888877788889999999999998765532200 11 1111112
Q ss_pred HHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCC
Q 005499 500 AKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAY 579 (693)
Q Consensus 500 ~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 579 (693)
+... ...+...|...-.++.++.|+. ...-..-+..+++.|+..++-.+++.+.+..|.
T Consensus 237 A~s~-ldadp~~Ar~~A~~a~KL~pdl--------------------vPaav~AAralf~d~~~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 237 AMSL-LDADPASARDDALEANKLAPDL--------------------VPAAVVAARALFRDGNLRKGSKILETAWKAEPH 295 (531)
T ss_pred HHHH-hcCChHHHHHHHHHHhhcCCcc--------------------chHHHHHHHHHHhccchhhhhhHHHHHHhcCCC
Confidence 2222 2246778888888888887444 566677789999999999999999999998874
Q ss_pred CHHHHHHHHHHHHHCCChHHHHHHHH---HHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHH
Q 005499 580 SAEMLHTEGVMHEGCGQTHEALRAYI---NALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYY 656 (693)
Q Consensus 580 ~~~~~~~lg~~~~~~g~~~~A~~~~~---~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~ 656 (693)
+.++ +..++.+.|+. ++.-++ +...+.|++.+.....+..-+.-|++. .|..--+.+....|. ..++..
T Consensus 296 -P~ia--~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~--~ARa~Aeaa~r~~pr-es~~lL 367 (531)
T COG3898 296 -PDIA--LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFS--AARAKAEAAAREAPR-ESAYLL 367 (531)
T ss_pred -hHHH--HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchH--HHHHHHHHHhhhCch-hhHHHH
Confidence 3332 22344555654 444444 445678999999999999999999999 999999999999887 456778
Q ss_pred HHHHHHHc-CChHHHHHHHHHHHhcccCCCC
Q 005499 657 LGLVHKDD-GRIADAADCFQAASMLEESDPI 686 (693)
Q Consensus 657 lg~~~~~~-g~~~~A~~~~~~al~l~p~~~~ 686 (693)
|+.+-... |+-.+...++-+++.- |.+|-
T Consensus 368 lAdIeeAetGDqg~vR~wlAqav~A-PrdPa 397 (531)
T COG3898 368 LADIEEAETGDQGKVRQWLAQAVKA-PRDPA 397 (531)
T ss_pred HHHHHhhccCchHHHHHHHHHHhcC-CCCCc
Confidence 88888766 9999999999999874 65554
No 175
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.69 E-value=1.5e-05 Score=76.66 Aligned_cols=223 Identities=26% Similarity=0.243 Sum_probs=189.4
Q ss_pred CCHHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hcCCCCchHHHHHHHHHHHHhCChhH
Q 005499 436 RNLSTALRYAKQYIDATGG--SVLKGWKLLALVLSAQQRFSEAEVVTDAALD--ETTKWEQGPILRLKAKLKIAQALPMD 511 (693)
Q Consensus 436 ~~~~~A~~~~~~al~~~p~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~l~~~~~~~g~~~~ 511 (693)
+.+..+...+...+...+. .. ......+..+...+.+..+...+...+. ..+ .....+...+......+++..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 113 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLA-GLLLLLALALLKLGRLEEALELLEKALELELLP--NLAEALLNLGLLLEALGKYEE 113 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccch-HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhcc--chHHHHHHHHHHHHHHhhHHH
Confidence 4455566666666666655 24 7788889999999999999999999987 566 678889999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHH-HHHhCCChHHHHHHHHHHHhhCC---CCHHHHHHH
Q 005499 512 AIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLAN-LYSGLSHWKDVAICMGKARELKA---YSAEMLHTE 587 (693)
Q Consensus 512 A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l 587 (693)
++..+..++...+... ......+. ++...|+++.|...+.+++...| .........
T Consensus 114 ~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 173 (291)
T COG0457 114 ALELLEKALALDPDPD--------------------LAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLAL 173 (291)
T ss_pred HHHHHHHHHcCCCCcc--------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHh
Confidence 9999999998665441 23333344 89999999999999999988777 456677777
Q ss_pred HHHHHHCCChHHHHHHHHHHHhhCCC-ChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 005499 588 GVMHEGCGQTHEALRAYINALLIEPS-YVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGR 666 (693)
Q Consensus 588 g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 666 (693)
+..+...+++++|+..+.+++...+. ....+..++..+...+++. .|...+..++...|.....+..++..+...|.
T Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (291)
T COG0457 174 GALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYE--EALEYYEKALELDPDNAEALYNLALLLLELGR 251 (291)
T ss_pred hhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHH--HHHHHHHHHHhhCcccHHHHhhHHHHHHHcCC
Confidence 77788999999999999999999999 6899999999999999988 99999999999999978888899999988888
Q ss_pred hHHHHHHHHHHHhcccC
Q 005499 667 IADAADCFQAASMLEES 683 (693)
Q Consensus 667 ~~~A~~~~~~al~l~p~ 683 (693)
++++...+.+++...|.
T Consensus 252 ~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 252 YEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHHhCcc
Confidence 99999999999998875
No 176
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.69 E-value=0.00027 Score=75.25 Aligned_cols=373 Identities=18% Similarity=0.087 Sum_probs=229.5
Q ss_pred HhcCCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHH
Q 005499 283 SLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLAAKICSEDCHLAAEG 362 (693)
Q Consensus 283 ~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A 362 (693)
...+++.+|..-.++.++..|+..-+...-|..+.+.|+.++|..+++..-. ..+++...+-.+-.++...+... ++
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~--~~~~D~~tLq~l~~~y~d~~~~d-~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYG--LKGTDDLTLQFLQNVYRDLGKLD-EA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhcc--CCCCchHHHHHHHHHHHHHhhhh-HH
Confidence 3567899999999999999999888888899999999999999988887766 34667777777776666667777 99
Q ss_pred HHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChHHHHHH---------
Q 005499 363 IQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNADLFFDL--------- 433 (693)
Q Consensus 363 ~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l--------- 433 (693)
..++++++...|+ -.....+=.+|.+.+.+ ...+..|++.|+ ..|+++-.++..
T Consensus 97 ~~~Ye~~~~~~P~------eell~~lFmayvR~~~y-------k~qQkaa~~LyK----~~pk~~yyfWsV~Slilqs~~ 159 (932)
T KOG2053|consen 97 VHLYERANQKYPS------EELLYHLFMAYVREKSY-------KKQQKAALQLYK----NFPKRAYYFWSVISLILQSIF 159 (932)
T ss_pred HHHHHHHHhhCCc------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH----hCCcccchHHHHHHHHHHhcc
Confidence 9999999999984 12234444566666666 122244555554 556665544444
Q ss_pred --Hh----CCHHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH-hhcCCCCchHHHHHHHHHHHH
Q 005499 434 --EQ----RNLSTALRYAKQYIDAT-GGSVLKGWKLLALVLSAQQRFSEAEVVTDAAL-DETTKWEQGPILRLKAKLKIA 505 (693)
Q Consensus 434 --~~----~~~~~A~~~~~~al~~~-p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~~~l~~~~~~ 505 (693)
.. --..-|...+++.++.. +-....-....-.++..+|++++|.+.+..-+ +..+. .+...-......+..
T Consensus 160 ~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~-~~~~l~~~~~dllk~ 238 (932)
T KOG2053|consen 160 SENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTS-ANLYLENKKLDLLKL 238 (932)
T ss_pred CCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHH
Confidence 00 11235666777777765 32221223444556778899999999995433 33331 344444566677777
Q ss_pred hCChhHHHHHHHHHHHHHHhhhhh-----cC---Cc------------ccc---cc----hhhh-cccHHHHHHHHHHHH
Q 005499 506 QALPMDAIETYRYLLALVQAQRKS-----FG---PL------------RCL---SQ----IEDD-KVNEFQVWHGLANLY 557 (693)
Q Consensus 506 ~g~~~~A~~~~~~~l~~~~~~~~~-----~~---~~------------~~~---~~----~~~~-~~~~~~~~~~la~~~ 557 (693)
.+++.+-.+...+++...+++... +. .. ..+ .. ...+ ...-.-++..+-.-+
T Consensus 239 l~~w~~l~~l~~~Ll~k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~ 318 (932)
T KOG2053|consen 239 LNRWQELFELSSRLLEKGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRY 318 (932)
T ss_pred hcChHHHHHHHHHHHHhCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHh
Confidence 888888888888888777665111 10 00 000 00 1111 122234455555555
Q ss_pred HhCCChHHHHHHHHHHHhhCCCCH------------HH------------------------HHHHHHHHHHCCCh----
Q 005499 558 SGLSHWKDVAICMGKARELKAYSA------------EM------------------------LHTEGVMHEGCGQT---- 597 (693)
Q Consensus 558 ~~~~~~~~A~~~~~~al~~~p~~~------------~~------------------------~~~lg~~~~~~g~~---- 597 (693)
...|+.+++...|-+-....|-.. .. +...-.+....|.+
T Consensus 319 ~~~gd~ee~~~~y~~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ 398 (932)
T KOG2053|consen 319 KLIGDSEEMLSYYFKKFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLP 398 (932)
T ss_pred cccCChHHHHHHHHHHhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCC
Confidence 678999998888776664433210 00 11111122223321
Q ss_pred -HHHHHH-------HHHHHhh----CCCC---hhHHH-----HHHHHHHHhCCCC-hHHHHHHHHHHHhhCCCCHHHHHH
Q 005499 598 -HEALRA-------YINALLI----EPSY---VPCKV-----LVGSLFSKLGPKA-LPVARSLLSDALRIEPTNRKAWYY 656 (693)
Q Consensus 598 -~~A~~~-------~~~al~~----~p~~---~~~~~-----~la~~~~~~g~~~-l~~A~~~~~~al~~~p~~~~~~~~ 656 (693)
+.-..+ |++-++. .|.. .+.+. .|-.++.+.++.. +-+|+-.++..+..+|.|+..-..
T Consensus 399 ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLl 478 (932)
T KOG2053|consen 399 ADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLL 478 (932)
T ss_pred hHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHH
Confidence 111112 2222221 1221 22232 3334555555543 347999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHH
Q 005499 657 LGLVHKDDGRIADAADCFQA 676 (693)
Q Consensus 657 lg~~~~~~g~~~~A~~~~~~ 676 (693)
+-.+|...|-+..|.+.|+.
T Consensus 479 LiriY~~lGa~p~a~~~y~t 498 (932)
T KOG2053|consen 479 LIRIYSYLGAFPDAYELYKT 498 (932)
T ss_pred HHHHHHHhcCChhHHHHHHh
Confidence 99999999999999888864
No 177
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.68 E-value=3.1e-07 Score=75.41 Aligned_cols=96 Identities=20% Similarity=0.105 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC---ChhHHHHH
Q 005499 548 QVWHGLANLYSGLSHWKDVAICMGKARELKAYS---AEMLHTEGVMHEGCGQTHEALRAYINALLIEPS---YVPCKVLV 621 (693)
Q Consensus 548 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l 621 (693)
.+++.+|.++-..|+.++|+.+|++++...... ..++..+|..+...|++++|+..+++++...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 356667777777777777777777777654333 346667777777777777777777777766666 55566666
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHh
Q 005499 622 GSLFSKLGPKALPVARSLLSDALR 645 (693)
Q Consensus 622 a~~~~~~g~~~l~~A~~~~~~al~ 645 (693)
+.++...|+.+ +|+..+-.++.
T Consensus 82 Al~L~~~gr~~--eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPK--EALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHH--HHHHHHHHHHH
Confidence 67777777776 77776665553
No 178
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.68 E-value=7.3e-06 Score=75.06 Aligned_cols=169 Identities=14% Similarity=-0.034 Sum_probs=120.8
Q ss_pred HhCCHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCc-hHHHHHHHHHHHHh-CCh
Q 005499 434 EQRNLSTALRYAKQYIDATGGSV--LKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQ-GPILRLKAKLKIAQ-ALP 509 (693)
Q Consensus 434 ~~~~~~~A~~~~~~al~~~p~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~~~l~~~~~~~-g~~ 509 (693)
+.|++++|...|+.+....|..+ ..+...++-++.+.+++++|+..+++-+..+|...+ ..+++.+|.++... .+.
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~ 125 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDV 125 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCcc
Confidence 89999999999999999888764 267889999999999999999999999999994322 34566777664433 233
Q ss_pred hHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccH-----------------HHHHHHHHHHHHhCCChHHHHHHHHH
Q 005499 510 MDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNE-----------------FQVWHGLANLYSGLSHWKDVAICMGK 572 (693)
Q Consensus 510 ~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~la~~~~~~~~~~~A~~~~~~ 572 (693)
..=...-+.++...... +...|+. +.-=+.+|..|.+.|.+-.|+.-+++
T Consensus 126 ~rDq~~~~~A~~~f~~~-------------i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 126 TRDQSAARAAFAAFKEL-------------VQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred ccCHHHHHHHHHHHHHH-------------HHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 33333334444433222 2333332 12234668999999999999999999
Q ss_pred HHhhCCCCH---HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCCh
Q 005499 573 ARELKAYSA---EMLHTEGVMHEGCGQTHEALRAYINALLIEPSYV 615 (693)
Q Consensus 573 al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 615 (693)
+++..|+.. +++..+..+|...|-.++|...-.-.-.-.|++.
T Consensus 193 v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 193 VLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 999877654 5788888999999999998765444333345543
No 179
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=7e-06 Score=74.70 Aligned_cols=201 Identities=13% Similarity=0.044 Sum_probs=150.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCccccc
Q 005499 458 KGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLS 537 (693)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 537 (693)
.+...++.....-++.++-+.-..+.+.......+......-+.+++..|++++|+........+
T Consensus 73 qAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l--------------- 137 (299)
T KOG3081|consen 73 QAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL--------------- 137 (299)
T ss_pred HHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH---------------
Confidence 45556666665566655555555444433221023345556678899999999999988874443
Q ss_pred chhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCChHHHHHHHHHHHhhCCC
Q 005499 538 QIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEG----CGQTHEALRAYINALLIEPS 613 (693)
Q Consensus 538 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~ 613 (693)
++...-..++.+..+.+-|...++++..++.+. .+..|+..+.. .+.+.+|.-+|++.-...|.
T Consensus 138 ----------E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~--tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~ 205 (299)
T KOG3081|consen 138 ----------EAAALNVQILLKMHRFDLAEKELKKMQQIDEDA--TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPP 205 (299)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH--HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCC
Confidence 455555677888899999999999999887543 33334444332 34688999999999987888
Q ss_pred ChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHH-HHHHHHhcccCCCCC
Q 005499 614 YVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAAD-CFQAASMLEESDPIE 687 (693)
Q Consensus 614 ~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~-~~~~al~l~p~~~~~ 687 (693)
.+..++..+.+...+|+++ +|...++.++..++++|+++.++-.+-...|...++.+ ...+.....|++|.+
T Consensus 206 T~~llnG~Av~~l~~~~~e--eAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 206 TPLLLNGQAVCHLQLGRYE--EAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred ChHHHccHHHHHHHhcCHH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 8899999999999999999 99999999999999999999999999999999877655 556666677887754
No 180
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.67 E-value=5.2e-07 Score=90.49 Aligned_cols=121 Identities=17% Similarity=0.143 Sum_probs=109.8
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCC
Q 005499 552 GLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPK 631 (693)
Q Consensus 552 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 631 (693)
.+...+...++++.|+..+++..+.+|+ +...++.++...++-.+|+..+.+++...|.+...+...+..+...+++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 3455566678999999999999988865 6667899999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005499 632 ALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAA 677 (693)
Q Consensus 632 ~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 677 (693)
+ .|+...+++....|++...|+.|+.+|...|++++|+..+..+
T Consensus 251 ~--lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 251 E--LALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred H--HHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 9 9999999999999999999999999999999999999776633
No 181
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.67 E-value=5.5e-06 Score=70.85 Aligned_cols=130 Identities=19% Similarity=0.160 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC--ChhHHHHHHH
Q 005499 547 FQVWHGLANLYSGLSHWKDVAICMGKARE-LKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPS--YVPCKVLVGS 623 (693)
Q Consensus 547 ~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~ 623 (693)
..-.+.+|......|++.+|...|++++. +.-+++..+..++...+..+++..|...+++..+.+|. .++....+|.
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR 168 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFAR 168 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHH
Confidence 35678899999999999999999999885 57788999999999999999999999999999998875 4677888999
Q ss_pred HHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 005499 624 LFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASM 679 (693)
Q Consensus 624 ~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 679 (693)
++...|++. .|+..|+.++...|+ +.+....+..+..+|+.++|...+....+
T Consensus 169 ~laa~g~~a--~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 169 TLAAQGKYA--DAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHhcCCch--hHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 999999999 999999999998886 77888889999999998888766655443
No 182
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.65 E-value=5.4e-07 Score=74.02 Aligned_cols=96 Identities=26% Similarity=0.254 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCC---CHHHHH
Q 005499 582 EMLHTEGVMHEGCGQTHEALRAYINALLIEPSY---VPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPT---NRKAWY 655 (693)
Q Consensus 582 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~---~~~~~~ 655 (693)
.+++.+|.++-..|+.++|+..|++++...+.. ..++..+|.++..+|+++ +|+..+++.+...|+ +.....
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~d--eA~~~L~~~~~~~p~~~~~~~l~~ 79 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYD--EALALLEEALEEFPDDELNAALRV 79 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHCCCccccHHHHH
Confidence 578999999999999999999999999976544 468999999999999999 999999999999898 778888
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHh
Q 005499 656 YLGLVHKDDGRIADAADCFQAASM 679 (693)
Q Consensus 656 ~lg~~~~~~g~~~~A~~~~~~al~ 679 (693)
.++.++...|++++|+..+-.++.
T Consensus 80 f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 80 FLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 899999999999999999987765
No 183
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.63 E-value=5.8e-07 Score=90.15 Aligned_cols=121 Identities=18% Similarity=0.084 Sum_probs=91.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhh
Q 005499 462 LLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIED 541 (693)
Q Consensus 462 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 541 (693)
.+..++...++++.|+.++++..+ .++.+...++.++...++..+|++.+++++...|
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~-----~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p----------------- 231 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRE-----RDPEVAVLLARVYLLMNEEVEAIRLLNEALKENP----------------- 231 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHh-----cCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-----------------
Confidence 344555666788888888877553 4577777888888888888888888888886653
Q ss_pred hcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 005499 542 DKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINA 607 (693)
Q Consensus 542 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 607 (693)
.+...+...+..+...++++.|+.+.++++...|.+...|+.|+.+|...|++++|+..+..+
T Consensus 232 ---~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 232 ---QDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred ---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 336777778888888888888888888888888888888888888888888888888666543
No 184
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.59 E-value=6.4e-06 Score=72.31 Aligned_cols=91 Identities=10% Similarity=-0.087 Sum_probs=66.9
Q ss_pred HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHH
Q 005499 434 EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAI 513 (693)
Q Consensus 434 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 513 (693)
..|-..-|...|.+++.+.|+-+ .++..+|..+...|+|+.|.+.|+..++++| ....+..+.|..+.--|++.-|.
T Consensus 77 SlGL~~LAR~DftQaLai~P~m~-~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp--~y~Ya~lNRgi~~YY~gR~~LAq 153 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPDMP-EVFNYLGIYLTQAGNFDAAYEAFDSVLELDP--TYNYAHLNRGIALYYGGRYKLAQ 153 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCCcH-HHHHHHHHHHHhcccchHHHHHhhhHhccCC--cchHHHhccceeeeecCchHhhH
Confidence 56666777777777777777777 7777777777777777777777777777777 56667777777777777777777
Q ss_pred HHHHHHHHHHHhhh
Q 005499 514 ETYRYLLALVQAQR 527 (693)
Q Consensus 514 ~~~~~~l~~~~~~~ 527 (693)
+.+.+..+.+|++|
T Consensus 154 ~d~~~fYQ~D~~DP 167 (297)
T COG4785 154 DDLLAFYQDDPNDP 167 (297)
T ss_pred HHHHHHHhcCCCCh
Confidence 77777666665553
No 185
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.57 E-value=1e-07 Score=89.04 Aligned_cols=218 Identities=12% Similarity=-0.008 Sum_probs=130.2
Q ss_pred HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHH
Q 005499 434 EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAI 513 (693)
Q Consensus 434 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 513 (693)
.+|.|++|+.+|.+.+...|.++ ..+.+.|..|+++++|..|...++.++.++. ....+|...+..-..+|...+|.
T Consensus 109 KQgKy~EAIDCYs~~ia~~P~Np-V~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~--~Y~KAYSRR~~AR~~Lg~~~EAK 185 (536)
T KOG4648|consen 109 KQGKYEEAIDCYSTAIAVYPHNP-VYHINRALAYLKQKSFAQAEEDCEAAIALDK--LYVKAYSRRMQARESLGNNMEAK 185 (536)
T ss_pred hccchhHHHHHhhhhhccCCCCc-cchhhHHHHHHHHHHHHHHHHhHHHHHHhhH--HHHHHHHHHHHHHHHHhhHHHHH
Confidence 56677777777777777777666 6666777777777777777777777777666 55666666666666777777777
Q ss_pred HHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHH---------H
Q 005499 514 ETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEM---------L 584 (693)
Q Consensus 514 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~---------~ 584 (693)
+.++.++++.|.. .+....++ ......++.- +.+..|....+ .
T Consensus 186 kD~E~vL~LEP~~--------------------~ELkK~~a----~i~Sl~E~~I----~~KsT~G~~~A~Q~~~Q~l~~ 237 (536)
T KOG4648|consen 186 KDCETVLALEPKN--------------------IELKKSLA----RINSLRERKI----ATKSTPGFTPARQGMIQILPI 237 (536)
T ss_pred HhHHHHHhhCccc--------------------HHHHHHHH----HhcchHhhhH----HhhcCCCCCccccchhhhccc
Confidence 7777777666433 22222222 2222222211 11111111111 1
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 005499 585 HTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDD 664 (693)
Q Consensus 585 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 664 (693)
-.-|..+...|.++.++.++.+-+..+..+.....+ +..+.+.-+++ .++....+++-.+|.........|..-.-.
T Consensus 238 K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~--~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~ 314 (536)
T KOG4648|consen 238 KKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSN--CGIIEEVKKTNPKPTPMPDTSGPPKAETIA 314 (536)
T ss_pred cCcchhhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcc--hhHHHHHHhcCCCCCcCcccCCCchhHHHH
Confidence 123445556666666766666655544333333333 56677777777 888877787777776555555555555566
Q ss_pred CChHHHHHHHHHHHhcccCCC
Q 005499 665 GRIADAADCFQAASMLEESDP 685 (693)
Q Consensus 665 g~~~~A~~~~~~al~l~p~~~ 685 (693)
|...++...|+.++.+.|.+.
T Consensus 315 ~~~~E~K~~~~T~~~~~P~~~ 335 (536)
T KOG4648|consen 315 KTSKEVKPTKQTAVKVAPAVE 335 (536)
T ss_pred hhhhhcCcchhheeeeccccc
Confidence 777788888888888877654
No 186
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.56 E-value=1.9e-07 Score=69.38 Aligned_cols=63 Identities=16% Similarity=0.046 Sum_probs=33.2
Q ss_pred hCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHH
Q 005499 559 GLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLV 621 (693)
Q Consensus 559 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 621 (693)
..|++++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++..+..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 445555555555555555555555555555555555555555555555555555544444333
No 187
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.56 E-value=1.1e-07 Score=70.57 Aligned_cols=67 Identities=24% Similarity=0.293 Sum_probs=56.8
Q ss_pred HHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 005499 592 EGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLV 660 (693)
Q Consensus 592 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~ 660 (693)
...|++++|+..|++++..+|++..++..+|.+|.+.|+++ +|...+++++..+|+++..+..++.+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~--~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYD--EAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HH--HHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 56788999999999999999999999999999999999988 99999999999999888777766653
No 188
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.56 E-value=0.00094 Score=69.36 Aligned_cols=154 Identities=14% Similarity=0.121 Sum_probs=76.5
Q ss_pred CcCHHHHHHHhhhccCCCHHHHHH-HHHHHHhhcCCHHHHHhhhccCCcchhhhhccccchhhhhhhccCCCCCCCccch
Q 005499 36 EGNIQEAESSLREGLSLNFEEARA-LLGRLEYQRGNVEGALRVFDGIDLHAAIQRLQPSFSEKSASKKCRSRSDSHVSVS 114 (693)
Q Consensus 36 ~g~~~~A~~~~~~~l~~~~~~a~~-~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (693)
..++.+|+..+++.-+.+...-++ .+++-|...|+|+-|.+.|-+...-.- .+..-....+|.++....
T Consensus 745 akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~d----------ai~my~k~~kw~da~kla 814 (1636)
T KOG3616|consen 745 AKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKD----------AIDMYGKAGKWEDAFKLA 814 (1636)
T ss_pred hhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhHH----------HHHHHhccccHHHHHHHH
Confidence 333444444444333333222233 567778889999999999987642210 111111122333332111
Q ss_pred --hhHHHHHHHHHHHHHHHhHhhCChHHHHHHHH------HHHHHHHHhhhcCCCChhh---hhhHHHHHHHHHhhhHHH
Q 005499 115 --QHAASLVLEAIYLKAKSLQKLGRLTEAANECK------SVLDAVERIFQQGIPDAQV---DNRLQETVSRAVELLPEL 183 (693)
Q Consensus 115 --~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~------~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~a~~~l~~~ 183 (693)
.+.....+-.|..++.-+...|+|.+|.++|- +++...++. +..+... .+.-++.+...-.+++.-
T Consensus 815 ~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~---~~~ddmirlv~k~h~d~l~dt~~~f~~e 891 (1636)
T KOG3616|consen 815 EECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKH---GLDDDMIRLVEKHHGDHLHDTHKHFAKE 891 (1636)
T ss_pred HHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhh---CcchHHHHHHHHhChhhhhHHHHHHHHH
Confidence 11112234456667777788888888877754 222222111 1111100 001122333445566667
Q ss_pred HhhcCCchHHHHHHHHHhc
Q 005499 184 WKQVGCDHDALAAYRRAVL 202 (693)
Q Consensus 184 ~~~~g~~~~A~~~~~~~l~ 202 (693)
|-..|+.+.|...|-++-.
T Consensus 892 ~e~~g~lkaae~~flea~d 910 (1636)
T KOG3616|consen 892 LEAEGDLKAAEEHFLEAGD 910 (1636)
T ss_pred HHhccChhHHHHHHHhhhh
Confidence 7788888888888777643
No 189
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.56 E-value=3.5e-07 Score=69.03 Aligned_cols=67 Identities=19% Similarity=0.235 Sum_probs=45.2
Q ss_pred HHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHH
Q 005499 554 ANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVL 620 (693)
Q Consensus 554 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 620 (693)
..+|...+++++|+.++++++..+|+++..|..+|.++...|++++|+..|+++++..|+++.+...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 3456666777777777777777777777777777777777777777777777777776666555443
No 190
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.53 E-value=1e-06 Score=76.10 Aligned_cols=112 Identities=12% Similarity=0.068 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHH
Q 005499 548 QVWHGLANLYSGLSHWKDVAICMGKARELKAYSA-----EMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVG 622 (693)
Q Consensus 548 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 622 (693)
..+..-|.-++..|+|.+|..-|..|+.+.|..+ -.+.+.|.+..+++.++.|+..+.+++.++|.+..++...|
T Consensus 96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRA 175 (271)
T KOG4234|consen 96 DSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRA 175 (271)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHH
Confidence 4455668888999999999999999999998764 35778999999999999999999999999999999999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 005499 623 SLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVH 661 (693)
Q Consensus 623 ~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~ 661 (693)
.+|.++.+++ +|+..|.++++.+|....+.-....+-
T Consensus 176 eayek~ek~e--ealeDyKki~E~dPs~~ear~~i~rl~ 212 (271)
T KOG4234|consen 176 EAYEKMEKYE--EALEDYKKILESDPSRREAREAIARLP 212 (271)
T ss_pred HHHHhhhhHH--HHHHHHHHHHHhCcchHHHHHHHHhcC
Confidence 9999999999 999999999999999877766555443
No 191
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.52 E-value=2.7e-05 Score=66.77 Aligned_cols=152 Identities=12% Similarity=0.039 Sum_probs=110.1
Q ss_pred HcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHH
Q 005499 469 AQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQ 548 (693)
Q Consensus 469 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (693)
+.=+.+....-..+.++..| ...-.+.++..+...|++.+|...|++++.-- ...++.
T Consensus 68 q~ldP~R~~Rea~~~~~~Ap---Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~-------------------fA~d~a 125 (251)
T COG4700 68 QKLDPERHLREATEELAIAP---TVQNRYRLANALAELGRYHEAVPHYQQALSGI-------------------FAHDAA 125 (251)
T ss_pred HhcChhHHHHHHHHHHhhch---hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccc-------------------cCCCHH
Confidence 33344444444555555666 44556778888888888888888888877531 133467
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q 005499 549 VWHGLANLYSGLSHWKDVAICMGKARELKAY--SAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFS 626 (693)
Q Consensus 549 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 626 (693)
.+..+++..+..+++..|...+++..+.+|. .++....+|..+...|.+.+|...|+.++...|+ +.+....+..+.
T Consensus 126 ~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La 204 (251)
T COG4700 126 MLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLA 204 (251)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHH
Confidence 7788888888888888888888888887764 4667778888888888888888888888888776 566777788888
Q ss_pred HhCCCChHHHHHHHHHHHh
Q 005499 627 KLGPKALPVARSLLSDALR 645 (693)
Q Consensus 627 ~~g~~~l~~A~~~~~~al~ 645 (693)
++|+.+ +|..-+....+
T Consensus 205 ~qgr~~--ea~aq~~~v~d 221 (251)
T COG4700 205 KQGRLR--EANAQYVAVVD 221 (251)
T ss_pred Hhcchh--HHHHHHHHHHH
Confidence 888877 76665554443
No 192
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.51 E-value=2.5e-06 Score=78.93 Aligned_cols=104 Identities=13% Similarity=0.035 Sum_probs=90.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC---hhHHHHHHH
Q 005499 550 WHGLANLYSGLSHWKDVAICMGKARELKAYS---AEMLHTEGVMHEGCGQTHEALRAYINALLIEPSY---VPCKVLVGS 623 (693)
Q Consensus 550 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~ 623 (693)
.+..+.-++..|+|.+|...|..-++..|++ +.++|.||.+++.+|+++.|...|..+++-.|++ +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 6777888888999999999999999998876 5789999999999999999999999999887765 578999999
Q ss_pred HHHHhCCCChHHHHHHHHHHHhhCCCCHHHHH
Q 005499 624 LFSKLGPKALPVARSLLSDALRIEPTNRKAWY 655 (693)
Q Consensus 624 ~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~ 655 (693)
+..++|+.+ +|...|+++++..|+.+.+-.
T Consensus 224 ~~~~l~~~d--~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 224 SLGRLGNTD--EACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHhcCHH--HHHHHHHHHHHHCCCCHHHHH
Confidence 999999998 999999999999998876544
No 193
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.49 E-value=2.8e-06 Score=70.80 Aligned_cols=119 Identities=11% Similarity=0.026 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChh---HHHH
Q 005499 547 FQVWHGLANLYSGLSHWKDVAICMGKARELKAYS---AEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVP---CKVL 620 (693)
Q Consensus 547 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~ 620 (693)
+..++.-|...++.|+|++|++.|+.+....|.. ..+...+|.+|...+++++|+..+++.++++|.++. +++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 4556666666667777777777777666665543 345666677777777777777777777777666643 4555
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCC
Q 005499 621 VGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASMLEESDPI 686 (693)
Q Consensus 621 la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 686 (693)
.|.++..+.... -..++ ....+| +...+|...|++.+...|+++-
T Consensus 90 ~gL~~~~~~~~~---~~~~~--~~drD~----------------~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 90 RGLSYYEQDEGS---LQSFF--RSDRDP----------------TPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHHHhhhH---Hhhhc--ccccCc----------------HHHHHHHHHHHHHHHHCcCChh
Confidence 666655554311 00000 111111 1245788888888888887764
No 194
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.49 E-value=0.0017 Score=63.85 Aligned_cols=401 Identities=10% Similarity=-0.019 Sum_probs=236.0
Q ss_pred hcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHH
Q 005499 265 LGKIKWDPAVMEHLTYALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMA 344 (693)
Q Consensus 265 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~ 344 (693)
++.+|.+...|..|..-+...|.++...+++++.....|--.++|......-+..++|..-..+|.+++....+ ...
T Consensus 35 IkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~---ldL 111 (660)
T COG5107 35 IKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN---LDL 111 (660)
T ss_pred hhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc---HhH
Confidence 45678899999999999999999999999999999888878889988888888889999999999999985422 333
Q ss_pred HHHHHHHHHhcCC--cH-------HHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHH
Q 005499 345 LLLAAKICSEDCH--LA-------AEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKS 415 (693)
Q Consensus 345 ~~~~a~~~~~~~~--~~-------~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~ 415 (693)
+.+.- -+....+ .. -+|.++.-...-..|.. ...|...+..+..-... ..-+..+..+.-...
T Consensus 112 W~lYl-~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s-----~~~W~ey~~fle~~~~~--~kwEeQqrid~iR~~ 183 (660)
T COG5107 112 WMLYL-EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQS-----ENYWDEYGLFLEYIEEL--GKWEEQQRIDKIRNG 183 (660)
T ss_pred HHHHH-HHHHhhCcccccchhhhhHHHHHHHHhcccccccc-----cchHHHHHHHHHhcccc--ccHHHHHHHHHHHHH
Confidence 32221 1221111 00 12333322222223322 22333333322111111 111222223555666
Q ss_pred HHHHHhcCCCChHH-HHHH------------------HhCCHHHHHHHH-------------------------------
Q 005499 416 LDGASTFENNNADL-FFDL------------------EQRNLSTALRYA------------------------------- 445 (693)
Q Consensus 416 ~~~al~~~p~~~~~-~~~l------------------~~~~~~~A~~~~------------------------------- 445 (693)
|.+++...-++.+- |... ..--|..|...+
T Consensus 184 Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~ 263 (660)
T COG5107 184 YMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSN 263 (660)
T ss_pred HHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccch
Confidence 66666543333221 1111 011122222222
Q ss_pred ----------------------------HHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHH
Q 005499 446 ----------------------------KQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILR 497 (693)
Q Consensus 446 ----------------------------~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 497 (693)
++++.-.|-.+ +.|+.....+...++-+.|+....+++...| ....
T Consensus 264 WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~-evw~dys~Y~~~isd~q~al~tv~rg~~~sp-----sL~~ 337 (660)
T COG5107 264 WLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAE-EVWFDYSEYLIGISDKQKALKTVERGIEMSP-----SLTM 337 (660)
T ss_pred hhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHhhccHHHHHHHHHHhcccCCC-----chhe
Confidence 33333333344 5566666666677788888888888777777 3566
Q ss_pred HHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCC--cccccc--------hhhhcccHHHHHHHHHHHHHhCCChHHHH
Q 005499 498 LKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGP--LRCLSQ--------IEDDKVNEFQVWHGLANLYSGLSHWKDVA 567 (693)
Q Consensus 498 ~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~--~~~~~~--------~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 567 (693)
.++..+....+-+.-..+|+++.+.-......... ...+.. .........-+|+.+-+.-.+..-.+.|.
T Consensus 338 ~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR 417 (660)
T COG5107 338 FLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAAR 417 (660)
T ss_pred eHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHH
Confidence 67777777777776667777665432211110000 000000 00111112334555555555566678888
Q ss_pred HHHHHHHhhCCCCHHHHHHHHH-HHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhh
Q 005499 568 ICMGKARELKAYSAEMLHTEGV-MHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRI 646 (693)
Q Consensus 568 ~~~~~al~~~p~~~~~~~~lg~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~ 646 (693)
.+|-++-+..-..+.++..-+. -+...|++.-|...|+-.+...|+.+......-..+...++-+ .|..+|++++..
T Consensus 418 ~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~--naraLFetsv~r 495 (660)
T COG5107 418 KLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEE--NARALFETSVER 495 (660)
T ss_pred HHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHH--HHHHHHHHhHHH
Confidence 8888877654333444433333 3567899999999999999999998877666667778889988 999999988764
Q ss_pred CCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCC
Q 005499 647 EPTN--RKAWYYLGLVHKDDGRIADAADCFQAASMLEESD 684 (693)
Q Consensus 647 ~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 684 (693)
-... ..+|..+-.--..-|+...+...=++..++.|..
T Consensus 496 ~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 496 LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 3332 4566666666667777777766666665555543
No 195
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.48 E-value=2.4e-06 Score=79.00 Aligned_cols=108 Identities=15% Similarity=0.066 Sum_probs=97.8
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005499 496 LRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARE 575 (693)
Q Consensus 496 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 575 (693)
.+..+.-++..|+|..|...|...++.+|+. +..+.+++.||.+++.+|++++|...|..+.+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s-----------------~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k 206 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNS-----------------TYTPNAYYWLGESLYAQGDYEDAAYIFARVVK 206 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----------------cccchhHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 6788888889999999999999999999877 55588999999999999999999999999999
Q ss_pred hCCCC---HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHH
Q 005499 576 LKAYS---AEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVL 620 (693)
Q Consensus 576 ~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 620 (693)
..|++ +++++.+|.+...+|+.++|...|+++++..|+...+...
T Consensus 207 ~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 207 DYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred hCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 87765 6889999999999999999999999999999998766544
No 196
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.48 E-value=8.2e-07 Score=76.67 Aligned_cols=102 Identities=22% Similarity=0.079 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCCh-----hHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 005499 583 MLHTEGVMHEGCGQTHEALRAYINALLIEPSYV-----PCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYL 657 (693)
Q Consensus 583 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~l 657 (693)
-+-.-|.-++..|+|++|..-|..+|.+.|... ..+.+.|.++.+++.++ .|+....++++++|.+..++...
T Consensus 97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e--~aI~dcsKaiel~pty~kAl~RR 174 (271)
T KOG4234|consen 97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWE--SAIEDCSKAIELNPTYEKALERR 174 (271)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHH--HHHHHHHhhHhcCchhHHHHHHH
Confidence 344567888999999999999999999998764 36788999999999999 99999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcccCCCC
Q 005499 658 GLVHKDDGRIADAADCFQAASMLEESDPI 686 (693)
Q Consensus 658 g~~~~~~g~~~~A~~~~~~al~l~p~~~~ 686 (693)
+.+|.++..+++|++.|++.++++|....
T Consensus 175 Aeayek~ek~eealeDyKki~E~dPs~~e 203 (271)
T KOG4234|consen 175 AEAYEKMEKYEEALEDYKKILESDPSRRE 203 (271)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCcchHH
Confidence 99999999999999999999999998653
No 197
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=0.0019 Score=64.11 Aligned_cols=205 Identities=16% Similarity=0.136 Sum_probs=139.3
Q ss_pred HcCChHHHHHHHHHHHhhcCCC---C-chH--------HHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccc
Q 005499 469 AQQRFSEAEVVTDAALDETTKW---E-QGP--------ILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCL 536 (693)
Q Consensus 469 ~~g~~~~A~~~~~~al~~~p~~---~-~~~--------~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 536 (693)
..|-+++|.++-++++....+. + ... .+..++.+-.-.|++.+|++....+.+.....+...
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~------ 360 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPL------ 360 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchH------
Confidence 3466778888777776542210 1 111 234556666778999999999888888765443100
Q ss_pred cchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCC-C--HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 005499 537 SQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAY-S--AEMLHTEGVMHEGCGQTHEALRAYINALLIEPS 613 (693)
Q Consensus 537 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 613 (693)
-.....+.+.+.+|......+.++.|...|..+.+.... + +..-.+++.+|.+.|+-+.-.+..+ .+.|.
T Consensus 361 ----Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld---~i~p~ 433 (629)
T KOG2300|consen 361 ----LLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALD---LIGPL 433 (629)
T ss_pred ----HHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHH---hcCCC
Confidence 011234677888898889999999999999999876432 2 3345678999999887654333333 34454
Q ss_pred C----------hhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005499 614 Y----------VPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPT------NRKAWYYLGLVHKDDGRIADAADCFQAA 677 (693)
Q Consensus 614 ~----------~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~a 677 (693)
+ ..+++..|...+..+++. ||...+++.++.... ..-.+..||.+....|+..++.....-+
T Consensus 434 nt~s~ssq~l~a~~~~v~glfaf~qn~ln--EaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpa 511 (629)
T KOG2300|consen 434 NTNSLSSQRLEASILYVYGLFAFKQNDLN--EAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPA 511 (629)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchH
Confidence 3 234555666677788877 999999999986521 1234556899999999999999998888
Q ss_pred HhcccCCCCCc
Q 005499 678 SMLEESDPIES 688 (693)
Q Consensus 678 l~l~p~~~~~~ 688 (693)
+++....|.++
T Consensus 512 mqlAkKi~Di~ 522 (629)
T KOG2300|consen 512 MQLAKKIPDIP 522 (629)
T ss_pred HHHHhcCCCch
Confidence 88766555543
No 198
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.48 E-value=6.1e-07 Score=67.73 Aligned_cols=69 Identities=20% Similarity=0.123 Sum_probs=49.7
Q ss_pred HHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 005499 588 GVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLG 658 (693)
Q Consensus 588 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg 658 (693)
..++...+++++|+.++++++.++|+++..+..+|.++..+|++. +|...++++++..|+++.+....+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~--~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYE--EALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHH--HHHHHHHHHHHHCCCcHHHHHHHH
Confidence 456677777777777777777777777777777777777777777 777777777777777666554443
No 199
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.46 E-value=2.8e-06 Score=70.76 Aligned_cols=88 Identities=13% Similarity=-0.000 Sum_probs=62.0
Q ss_pred chHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHH
Q 005499 492 QGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMG 571 (693)
Q Consensus 492 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 571 (693)
.+..++..|.-.+..|+|++|++.|+.+....|.. +....+.+.++.+|+..+++++|+..++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g-----------------~ya~qAqL~l~yayy~~~~y~~A~a~~~ 71 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFG-----------------EYAEQAQLDLAYAYYKQGDYEEAIAAYD 71 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC-----------------cccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 44566677777777777777777777777776554 3445677777777788888888888777
Q ss_pred HHHhhCCCCH---HHHHHHHHHHHHCCC
Q 005499 572 KARELKAYSA---EMLHTEGVMHEGCGQ 596 (693)
Q Consensus 572 ~al~~~p~~~---~~~~~lg~~~~~~g~ 596 (693)
+-++++|.++ .+++..|.++..+..
T Consensus 72 rFirLhP~hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 72 RFIRLHPTHPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred HHHHhCCCCCCccHHHHHHHHHHHHHhh
Confidence 7777777664 356777777666544
No 200
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.46 E-value=2.3e-05 Score=68.89 Aligned_cols=191 Identities=14% Similarity=0.090 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHH
Q 005499 308 RWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLAAKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRM 387 (693)
Q Consensus 308 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 387 (693)
.++..|..|-..|-+.-|..-|.+++. +.|+-+.....+|..+...+++. .|.+.|..+++.+| .. .-++.+
T Consensus 67 l~fERGvlYDSlGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fd-aa~eaFds~~ELDp---~y--~Ya~lN 138 (297)
T COG4785 67 LLFERGVLYDSLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFD-AAYEAFDSVLELDP---TY--NYAHLN 138 (297)
T ss_pred HHHHhcchhhhhhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccch-HHHHHhhhHhccCC---cc--hHHHhc
Confidence 445555555566666666666666666 44666666666666666666666 66666666666666 33 455666
Q ss_pred HHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChH--HHHHH--HhCCHHHHHHHHHH-HHHhcCCCcHHHHHH
Q 005499 388 LGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNAD--LFFDL--EQRNLSTALRYAKQ-YIDATGGSVLKGWKL 462 (693)
Q Consensus 388 lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~l--~~~~~~~A~~~~~~-al~~~p~~~~~~~~~ 462 (693)
.|..+.--|++ .-|.+.|.+-.+.||++|- .|.++ ..-++.+|...+.+ +...+. .. ..|+.
T Consensus 139 Rgi~~YY~gR~-----------~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~-e~-WG~~i 205 (297)
T COG4785 139 RGIALYYGGRY-----------KLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDK-EQ-WGWNI 205 (297)
T ss_pred cceeeeecCch-----------HhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccH-hh-hhHHH
Confidence 77777777888 8888888888888888764 33344 55566777665543 333222 22 33333
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhcCCC-----CchHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 005499 463 LALVLSAQQRFSEAEVVTDAALDETTKW-----EQGPILRLKAKLKIAQALPMDAIETYRYLLALV 523 (693)
Q Consensus 463 la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 523 (693)
... ..|+..+ ...++++..-.... .-.+.++.+|..+...|+.++|...|+-++..+
T Consensus 206 V~~---yLgkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 206 VEF---YLGKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHH---HHhhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 322 2233221 12233333222200 123568889999999999999999999988765
No 201
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.45 E-value=4.9e-07 Score=77.55 Aligned_cols=67 Identities=18% Similarity=0.184 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC----------hHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhC
Q 005499 563 WKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQ----------THEALRAYINALLIEPSYVPCKVLVGSLFSKLG 629 (693)
Q Consensus 563 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 629 (693)
++.|.+.++.....+|.+++.+++.|.++..+.+ +++|+.-|++++.++|+...++.++|.+|..++
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555444322 233444444444444544444444444444443
No 202
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.42 E-value=7.6e-07 Score=83.31 Aligned_cols=104 Identities=14% Similarity=0.075 Sum_probs=97.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhC
Q 005499 550 WHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLG 629 (693)
Q Consensus 550 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 629 (693)
+...|+-|+++|.|++|+.||.+++..+|.++..+.+.+..|++...+..|...++.++.++..+..+|...+.+-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhhCCCCHHHHH
Q 005499 630 PKALPVARSLLSDALRIEPTNRKAWY 655 (693)
Q Consensus 630 ~~~l~~A~~~~~~al~~~p~~~~~~~ 655 (693)
+.. +|.+.++.++++.|++.+..-
T Consensus 180 ~~~--EAKkD~E~vL~LEP~~~ELkK 203 (536)
T KOG4648|consen 180 NNM--EAKKDCETVLALEPKNIELKK 203 (536)
T ss_pred hHH--HHHHhHHHHHhhCcccHHHHH
Confidence 988 999999999999999765433
No 203
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=5e-05 Score=68.88 Aligned_cols=165 Identities=10% Similarity=0.089 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHH
Q 005499 439 STALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRY 518 (693)
Q Consensus 439 ~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 518 (693)
+..+..+++-+. .+.+.++.++.-.|.|.-....+.+.++.+|. ..+.....+|.+.++.|+.+.|..+|+.
T Consensus 166 ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e-~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ 237 (366)
T KOG2796|consen 166 ESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPE-QEPQLLSGLGRISMQIGDIKTAEKYFQD 237 (366)
T ss_pred hhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCc-ccHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 455555555432 66788889999999999999999999998864 6788888999999999999999999997
Q ss_pred HHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChH
Q 005499 519 LLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTH 598 (693)
Q Consensus 519 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 598 (693)
.-+..... ........+..+.+.++...+++.+|...+.+++..+|.++.+.++.+.|+.-.|+..
T Consensus 238 vek~~~kL--------------~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~ 303 (366)
T KOG2796|consen 238 VEKVTQKL--------------DGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLK 303 (366)
T ss_pred HHHHHhhh--------------hccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHH
Confidence 76544222 1113345677788889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCh---hHHHHHHHHH
Q 005499 599 EALRAYINALLIEPSYV---PCKVLVGSLF 625 (693)
Q Consensus 599 ~A~~~~~~al~~~p~~~---~~~~~la~~~ 625 (693)
.|++..+.++...|... ...++|..+|
T Consensus 304 DAiK~~e~~~~~~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 304 DALKQLEAMVQQDPRHYLHESVLFNLTTMY 333 (366)
T ss_pred HHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence 99999999999998753 3444554443
No 204
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.37 E-value=0.004 Score=62.89 Aligned_cols=366 Identities=11% Similarity=-0.001 Sum_probs=209.8
Q ss_pred HhhcCCCCCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcC
Q 005499 296 EEIMPGVFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLAAKICSEDCHLAAEGIQYARTALSNAQG 375 (693)
Q Consensus 296 e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~ 375 (693)
++-++.+|.+...|+.+..-+..+ .+++....|++.+. .-|..+.++.......+...++. ....+|.+++...-
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~--~FP~s~r~W~~yi~~El~skdfe-~VEkLF~RCLvkvL- 84 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVN--VFPSSPRAWKLYIERELASKDFE-SVEKLFSRCLVKVL- 84 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHh-
Confidence 445678899999999998887776 99999999999999 45999999998888888777777 88888888887432
Q ss_pred CCcchhHhHHHHH-HHHHhhhhcccCChHHHhHHHHHHHHHHHHHH---hcCCCChHHHHHH--------------HhCC
Q 005499 376 KDEHLKGVGLRML-GLCLGRHAKVSSSDYERSRLQSEALKSLDGAS---TFENNNADLFFDL--------------EQRN 437 (693)
Q Consensus 376 ~~~~~~~~~~~~l-g~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~l--------------~~~~ 437 (693)
....|... -.+-...++. ......-...|+-++ ..++.....|... ...+
T Consensus 85 -----nlDLW~lYl~YVR~~~~~~-------~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QR 152 (656)
T KOG1914|consen 85 -----NLDLWKLYLSYVRETKGKL-------FGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQR 152 (656)
T ss_pred -----hHhHHHHHHHHHHHHccCc-------chHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHH
Confidence 12233222 1122222222 001122222333333 3556665555544 4457
Q ss_pred HHHHHHHHHHHHHhcCCCcHHHHHH-----------HH--HHHHHcCChHHHHHHHHHHHhhc-------C----CC---
Q 005499 438 LSTALRYAKQYIDATGGSVLKGWKL-----------LA--LVLSAQQRFSEAEVVTDAALDET-------T----KW--- 490 (693)
Q Consensus 438 ~~~A~~~~~~al~~~p~~~~~~~~~-----------la--~~~~~~g~~~~A~~~~~~al~~~-------p----~~--- 490 (693)
++...+.|++++...-.+....|.. .| .+-.....|..|...+++..... | +.
T Consensus 153 I~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~ 232 (656)
T KOG1914|consen 153 ITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKD 232 (656)
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChH
Confidence 7788889999986433333222221 11 12223346677777776654421 1 00
Q ss_pred --CchHHHHHHHHHHHHhC------Ch--hHHHHHHHHHHHHHHhhhhhcCCccccc-----------------------
Q 005499 491 --EQGPILRLKAKLKIAQA------LP--MDAIETYRYLLALVQAQRKSFGPLRCLS----------------------- 537 (693)
Q Consensus 491 --~~~~~~~~l~~~~~~~g------~~--~~A~~~~~~~l~~~~~~~~~~~~~~~~~----------------------- 537 (693)
.....|.++.......+ .. ..-.-.|++++...+-+++.|.......
T Consensus 233 e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~ 312 (656)
T KOG1914|consen 233 EIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEA 312 (656)
T ss_pred HHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHH
Confidence 01122333322221111 10 1112234555554444444332111100
Q ss_pred ----c-hhh-hcccHHHHHHHHHHHHHhCC---ChHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHCCChHHHHHHHHHH
Q 005499 538 ----Q-IED-DKVNEFQVWHGLANLYSGLS---HWKDVAICMGKARELKAYSA-EMLHTEGVMHEGCGQTHEALRAYINA 607 (693)
Q Consensus 538 ----~-~~~-~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~a 607 (693)
. .+. ....+...++.++..-...- ..+.-...+++++.+...++ -+|..+-..-.+..-.+.|...|.++
T Consensus 313 ~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~ka 392 (656)
T KOG1914|consen 313 ASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKA 392 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHH
Confidence 0 000 00111222233332221111 25555666777776544333 24555555556666677888888888
Q ss_pred HhhCCCChhHHHHHHHH-HHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 005499 608 LLIEPSYVPCKVLVGSL-FSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASML 680 (693)
Q Consensus 608 l~~~p~~~~~~~~la~~-~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 680 (693)
-+.......++..-|.+ |...++.. -|.+.|+-.++..++++..-......+...|+-..|...|++++..
T Consensus 393 R~~~r~~hhVfVa~A~mEy~cskD~~--~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 393 REDKRTRHHVFVAAALMEYYCSKDKE--TAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred hhccCCcchhhHHHHHHHHHhcCChh--HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 76443333444444444 44578888 9999999999999999998888888899999999999999999876
No 205
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.37 E-value=1.1e-06 Score=87.25 Aligned_cols=70 Identities=20% Similarity=0.085 Sum_probs=64.0
Q ss_pred hCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhH---HHHHHHHHHHhCCCChHHHHHHHHHHHhhC
Q 005499 576 LKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPC---KVLVGSLFSKLGPKALPVARSLLSDALRIE 647 (693)
Q Consensus 576 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~l~~A~~~~~~al~~~ 647 (693)
.+|+++..|+++|.++...|++++|+..|+++++++|++..+ |+++|.+|..+|+.+ +|+.++++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~d--EAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGK--KAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhc
Confidence 478889999999999999999999999999999999999854 999999999999988 9999999999973
No 206
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.36 E-value=0.0012 Score=65.61 Aligned_cols=129 Identities=15% Similarity=-0.008 Sum_probs=80.8
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHhhc-CCCCC--------cHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCC
Q 005499 270 WDPAVMEHLTYALSLCSQTSILAKQLEEIM-PGVFL--------RSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPN 340 (693)
Q Consensus 270 ~~~~~~~~l~~~~~~~g~~~~a~~~~e~~l-~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~ 340 (693)
+.+.....-...++..|++.+|.+.+-..- ...+. .-..|+++|.++++.|.|.-+..+|.++++.
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N----- 312 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRN----- 312 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHH-----
Confidence 444455555666677777777777665442 11111 1223677777777777777777777777752
Q ss_pred CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHH
Q 005499 341 DLMALLLAAKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGAS 420 (693)
Q Consensus 341 ~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 420 (693)
.|.+..+-...+ .... -. ........+..|..|...|++ -.|.++|.++.
T Consensus 313 ----------~c~qL~~g~~~~-----~~~t--ls--~nks~eilYNcG~~~Lh~grP-----------l~AfqCf~~av 362 (696)
T KOG2471|consen 313 ----------SCSQLRNGLKPA-----KTFT--LS--QNKSMEILYNCGLLYLHSGRP-----------LLAFQCFQKAV 362 (696)
T ss_pred ----------HHHHHhccCCCC-----ccee--hh--cccchhhHHhhhHHHHhcCCc-----------HHHHHHHHHHH
Confidence 111100000000 0000 00 122367789999999999999 99999999999
Q ss_pred hcCCCChHHHHHH
Q 005499 421 TFENNNADLFFDL 433 (693)
Q Consensus 421 ~~~p~~~~~~~~l 433 (693)
...-.+|..|..+
T Consensus 363 ~vfh~nPrlWLRl 375 (696)
T KOG2471|consen 363 HVFHRNPRLWLRL 375 (696)
T ss_pred HHHhcCcHHHHHH
Confidence 9999999999988
No 207
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=0.0042 Score=61.86 Aligned_cols=448 Identities=15% Similarity=0.048 Sum_probs=263.9
Q ss_pred HHHHhhhHHHHhhcC--CchHHHHHHHHHhcccCCCChhHHHHHHHHHHHHhhhcccccCCCCCcCCCCCcccCCChhHH
Q 005499 174 SRAVELLPELWKQVG--CDHDALAAYRRAVLSQWNLDNECCARIQKRFAVFLLHSGVEAGPPSLGSQVEGSYAPKNNLEE 251 (693)
Q Consensus 174 ~~a~~~l~~~~~~~g--~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (693)
-.++..++.-+...| +...+|.+.+......+....+... .-+++.++++ -.++++-
T Consensus 7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart--~LqLg~lL~~-------------------yT~N~el 65 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEART--HLQLGALLLR-------------------YTKNVEL 65 (629)
T ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHH--HHHHHHHHHH-------------------HhccHHH
Confidence 346666777788888 8889999988887764422111111 2244454422 2345666
Q ss_pred HHHHHHHHHHHHhhcCCCCc----HHHHHHHHHHHHhcC-CHHHHHHHHHhhcCCCCCcH----HHHHHHHHHHHHCCCc
Q 005499 252 AILLLLILMKKYHLGKIKWD----PAVMEHLTYALSLCS-QTSILAKQLEEIMPGVFLRS----DRWNALALCYSAIGQN 322 (693)
Q Consensus 252 a~~~~~~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g-~~~~a~~~~e~~l~~~~~~~----~~~~~la~~~~~~g~~ 322 (693)
|...+.... ...+..|.- -..+..|+..|.... .+..+...+.+++......+ ...++++..+.-..++
T Consensus 66 AksHLekA~--~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~ 143 (629)
T KOG2300|consen 66 AKSHLEKAW--LISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDF 143 (629)
T ss_pred HHHHHHHHH--HHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccc
Confidence 665554431 122333432 235677888887776 56777777888876554432 3467889999999999
Q ss_pred HHHHHHHHHHhhccCCCCCHH---HHHHHH--HHHHhcCCcH--HHHHHHHHHHHHhhcCCCc--chhHhHHHHHHHHHh
Q 005499 323 DAALNLLRKSLHKHERPNDLM---ALLLAA--KICSEDCHLA--AEGIQYARTALSNAQGKDE--HLKGVGLRMLGLCLG 393 (693)
Q Consensus 323 ~~A~~~~~~~l~~~~~p~~~~---~~~~~a--~~~~~~~~~~--~~A~~~~~~al~~~~~~~~--~~~~~~~~~lg~~~~ 393 (693)
..|.+.+.--... .+|-... .++.+. .+.....+.. ........+..+...++.. ...-..|..+-.+|+
T Consensus 144 ~sA~elLavga~s-Ad~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy 222 (629)
T KOG2300|consen 144 PSALELLAVGAES-ADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYY 222 (629)
T ss_pred hhHHHHHhccccc-cchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHH
Confidence 9999996544432 1232221 222222 2222222322 1233333344433222111 111233334444433
Q ss_pred -hhhcccCChHHHhHHHHHHHHHHHHHHh-cCCC-----------ChH------------HHHHH-------HhCCHHHH
Q 005499 394 -RHAKVSSSDYERSRLQSEALKSLDGAST-FENN-----------NAD------------LFFDL-------EQRNLSTA 441 (693)
Q Consensus 394 -~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~p~-----------~~~------------~~~~l-------~~~~~~~A 441 (693)
..|+..+. ..+++.+++.+. ..+. +.. ++.++ ..|-+++|
T Consensus 223 ~~~gq~rt~--------k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~ 294 (629)
T KOG2300|consen 223 LLPGQVRTV--------KPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKA 294 (629)
T ss_pred hcccchhhh--------HHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHH
Confidence 34554111 334444444432 1111 111 11111 56778888
Q ss_pred HHHHHHHHHhcCC------Cc-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhc---CC-----CCchHHHHHHH
Q 005499 442 LRYAKQYIDATGG------SV-------LKGWKLLALVLSAQQRFSEAEVVTDAALDET---TK-----WEQGPILRLKA 500 (693)
Q Consensus 442 ~~~~~~al~~~p~------~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~-----~~~~~~~~~l~ 500 (693)
.++-++++..... .. ...+-.++.+-.-.|++.+|++.+..+.+.. |. ...+.++..+|
T Consensus 295 ~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlG 374 (629)
T KOG2300|consen 295 QKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLG 374 (629)
T ss_pred HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHh
Confidence 8888887764211 11 0123345566677899999999888877643 31 01244567788
Q ss_pred HHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCC
Q 005499 501 KLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYS 580 (693)
Q Consensus 501 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 580 (693)
......+.++.|...|..+.+..... ...+-+-.++|..|.+.|+-+.-.+.++. +.|.+
T Consensus 375 lys~sv~~~enAe~hf~~a~k~t~~~-----------------dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~n 434 (629)
T KOG2300|consen 375 LYSHSVNCYENAEFHFIEATKLTESI-----------------DLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLN 434 (629)
T ss_pred hHhhhcchHHHHHHHHHHHHHhhhHH-----------------HHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCC
Confidence 88888899999999999998875322 22355667889999998876554444443 34442
Q ss_pred ----------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC------ChhHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 005499 581 ----------AEMLHTEGVMHEGCGQTHEALRAYINALLIEPS------YVPCKVLVGSLFSKLGPKALPVARSLLSDAL 644 (693)
Q Consensus 581 ----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~l~~A~~~~~~al 644 (693)
..+++..|...+.++++.||.....+.++.... ..-.+..|+.+....|+.. ++....+-++
T Consensus 435 t~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~--es~nmvrpam 512 (629)
T KOG2300|consen 435 TNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTV--ESRNMVRPAM 512 (629)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchH--HHHhccchHH
Confidence 356888899999999999999999999987521 1235677888899999999 9999888887
Q ss_pred hhC---CCCHHHHH---HHHHHHHHcCC--hHHHHHHHH
Q 005499 645 RIE---PTNRKAWY---YLGLVHKDDGR--IADAADCFQ 675 (693)
Q Consensus 645 ~~~---p~~~~~~~---~lg~~~~~~g~--~~~A~~~~~ 675 (693)
+.. |+.+..++ .+-.++...|+ .+...+.|.
T Consensus 513 qlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~ 551 (629)
T KOG2300|consen 513 QLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFR 551 (629)
T ss_pred HHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 753 55443332 35667778887 454544443
No 208
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=6.4e-05 Score=68.23 Aligned_cols=147 Identities=14% Similarity=0.159 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 005499 494 PILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKA 573 (693)
Q Consensus 494 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 573 (693)
.+.+.+..++.-.|.|.-.+..+++.++.+| +..+.....+|.+..+.|+.+.|..+|++.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~-------------------e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v 238 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYP-------------------EQEPQLLSGLGRISMQIGDIKTAEKYFQDV 238 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCC-------------------cccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 4556777888888889989999999888663 333677888899999999999999998865
Q ss_pred HhhC------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhC
Q 005499 574 RELK------AYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIE 647 (693)
Q Consensus 574 l~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~ 647 (693)
-+.. .....+..+.+.++.-.+++.+|...|.+++..+|.++.+.++.|.|+..+|+.. .|++.++.+++..
T Consensus 239 ek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~--DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 239 EKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLK--DALKQLEAMVQQD 316 (366)
T ss_pred HHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHH--HHHHHHHHHhccC
Confidence 4432 2334567778888888889999999999999999999999999999999999988 9999999999988
Q ss_pred CCCH---HHHHHHHHHH
Q 005499 648 PTNR---KAWYYLGLVH 661 (693)
Q Consensus 648 p~~~---~~~~~lg~~~ 661 (693)
|... ...++|-.+|
T Consensus 317 P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 317 PRHYLHESVLFNLTTMY 333 (366)
T ss_pred CccchhhhHHHHHHHHH
Confidence 8742 3445555444
No 209
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.33 E-value=1.2e-05 Score=64.45 Aligned_cols=97 Identities=20% Similarity=0.127 Sum_probs=59.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCCh----hHHHHHHHHH
Q 005499 550 WHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYV----PCKVLVGSLF 625 (693)
Q Consensus 550 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~ 625 (693)
+-.-|......|+.+.|++.|.+++.+.|..+.++++.+..+..+|+.++|+..+++++++..... .++...|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 334455566666666666666666666666666666666666666666666666666666543222 3455666666
Q ss_pred HHhCCCChHHHHHHHHHHHhhCC
Q 005499 626 SKLGPKALPVARSLLSDALRIEP 648 (693)
Q Consensus 626 ~~~g~~~l~~A~~~~~~al~~~p 648 (693)
..+|+.+ .|+..|+.+-++..
T Consensus 126 Rl~g~dd--~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 126 RLLGNDD--AARADFEAAAQLGS 146 (175)
T ss_pred HHhCchH--HHHHhHHHHHHhCC
Confidence 6666666 66666666655543
No 210
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.30 E-value=1.6e-06 Score=66.41 Aligned_cols=67 Identities=25% Similarity=0.321 Sum_probs=52.0
Q ss_pred ccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC---C----CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 005499 544 VNEFQVWHGLANLYSGLSHWKDVAICMGKARELK---A----YSAEMLHTEGVMHEGCGQTHEALRAYINALLI 610 (693)
Q Consensus 544 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 610 (693)
|....++..+|.+|...|++++|+.+|++++.+. + ..+.++.++|.++...|++++|++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3446788889999999999999999998888652 1 22456788888888888888888888888765
No 211
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.30 E-value=2.9e-06 Score=64.94 Aligned_cols=74 Identities=15% Similarity=0.174 Sum_probs=61.2
Q ss_pred CchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHH
Q 005499 491 EQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICM 570 (693)
Q Consensus 491 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 570 (693)
+...++..+|.++..+|++++|+.+|++++++..... ...+..+.++.++|.++...|++++|+.++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-------------~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 69 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLG-------------DDHPDTANTLNNLGECYYRLGDYEEALEYY 69 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-------------THHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHC-------------CCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4567889999999999999999999999999843332 223445889999999999999999999999
Q ss_pred HHHHhhC
Q 005499 571 GKARELK 577 (693)
Q Consensus 571 ~~al~~~ 577 (693)
++++++.
T Consensus 70 ~~al~i~ 76 (78)
T PF13424_consen 70 QKALDIF 76 (78)
T ss_dssp HHHHHHH
T ss_pred HHHHhhh
Confidence 9998763
No 212
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.29 E-value=0.00046 Score=68.34 Aligned_cols=128 Identities=18% Similarity=0.082 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH-----HHCCChHHHHHHHHHHH------h-------
Q 005499 548 QVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMH-----EGCGQTHEALRAYINAL------L------- 609 (693)
Q Consensus 548 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-----~~~g~~~~A~~~~~~al------~------- 609 (693)
.++-..+.+-...|+.-.|+..-++.+.. |+-..++..+|.+| +...+..+|+..+.--+ .
T Consensus 510 ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~-~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~D 588 (696)
T KOG2471|consen 510 AIFANMAYVELELGDPIKALSAATKLLQL-ADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQED 588 (696)
T ss_pred HHHHHHHHHHHHhcChhhHHHHHHHHHhh-hhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhh
Confidence 44555667778899999999998888864 45556666666655 45677777776554311 0
Q ss_pred ----------hCCCC---------------hhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCC--CCHHHHHHHHHHHH
Q 005499 610 ----------IEPSY---------------VPCKVLVGSLFSKLGPKALPVARSLLSDALRIEP--TNRKAWYYLGLVHK 662 (693)
Q Consensus 610 ----------~~p~~---------------~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p--~~~~~~~~lg~~~~ 662 (693)
++|.. ....++||.++.-+|+++ +|..++..+..+-| .++.+......+-.
T Consensus 589 f~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~d--qAk~ll~~aatl~hs~v~~~A~~lavyidL 666 (696)
T KOG2471|consen 589 FDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHD--QAKSLLTHAATLLHSLVNVQATVLAVYIDL 666 (696)
T ss_pred hhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccH--HHHHHHHHHHHhhhccccHHHHHHHHHHHH
Confidence 11110 135678999999999999 99999988888776 45677766677778
Q ss_pred HcCChHHHHHHHHHHH
Q 005499 663 DDGRIADAADCFQAAS 678 (693)
Q Consensus 663 ~~g~~~~A~~~~~~al 678 (693)
.+|+...|...+++.-
T Consensus 667 ~~G~~q~al~~lk~~~ 682 (696)
T KOG2471|consen 667 MLGRSQDALARLKQCT 682 (696)
T ss_pred hcCCCcchHHHHHhcc
Confidence 8999999988887764
No 213
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.26 E-value=3.1e-06 Score=84.21 Aligned_cols=71 Identities=17% Similarity=0.023 Sum_probs=66.8
Q ss_pred hhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 005499 541 DDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEM---LHTEGVMHEGCGQTHEALRAYINALLIE 611 (693)
Q Consensus 541 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~lg~~~~~~g~~~~A~~~~~~al~~~ 611 (693)
...|.++..|+++|.+|...|++++|+.+|+++++++|++..+ |+++|.+|..+|++++|+.++++++++.
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4567889999999999999999999999999999999999854 9999999999999999999999999973
No 214
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.20 E-value=0.011 Score=60.92 Aligned_cols=374 Identities=11% Similarity=-0.061 Sum_probs=201.7
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCcHHHHHHH-HHHHHHCCCcHHHHHHHHHHhhcc
Q 005499 258 ILMKKYHLGKIKWDPAVMEHLTYALSLCSQTSILAKQLEEIMPGVFLRSDRWNAL-ALCYSAIGQNDAALNLLRKSLHKH 336 (693)
Q Consensus 258 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~l-a~~~~~~g~~~~A~~~~~~~l~~~ 336 (693)
.......+...|.-.-.|..-+..-.+.|..+.+.+.||+.+...|-....|... +.+--..|+.+.-...|+.+....
T Consensus 65 r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~v 144 (577)
T KOG1258|consen 65 REVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYV 144 (577)
T ss_pred HHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhc
Confidence 3344566666776666667777777778888888888888888777777777654 333334566666667777776642
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHH
Q 005499 337 -ERPNDLMALLLAAKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKS 415 (693)
Q Consensus 337 -~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~ 415 (693)
.+--....+-..-.....+.++. .-...+++.++. | .+. ..-++..=.-+..+...... ...++..+.
T Consensus 145 G~dF~S~~lWdkyie~en~qks~k-~v~~iyeRilei-P---~~~-~~~~f~~f~~~l~~~~~~~l-----~~~d~~~~l 213 (577)
T KOG1258|consen 145 GLDFLSDPLWDKYIEFENGQKSWK-RVANIYERILEI-P---LHQ-LNRHFDRFKQLLNQNEEKIL-----LSIDELIQL 213 (577)
T ss_pred ccchhccHHHHHHHHHHhccccHH-HHHHHHHHHHhh-h---hhH-hHHHHHHHHHHHhcCChhhh-----cCHHHHHHH
Confidence 11112233333333334444455 556666666662 2 110 11111111111111110000 000111111
Q ss_pred HHHHHh--cCC---CChHHHH-HH-----HhCCHHH------------------------HHHHHHHHHHh-----cCCC
Q 005499 416 LDGAST--FEN---NNADLFF-DL-----EQRNLST------------------------ALRYAKQYIDA-----TGGS 455 (693)
Q Consensus 416 ~~~al~--~~p---~~~~~~~-~l-----~~~~~~~------------------------A~~~~~~al~~-----~p~~ 455 (693)
-..... ..+ ...+.+- .+ ..+.++. .+-.++..++. .|.+
T Consensus 214 ~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~ 293 (577)
T KOG1258|consen 214 RSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLD 293 (577)
T ss_pred hhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCccc
Confidence 000000 000 0000000 00 1111111 12222222211 1222
Q ss_pred c--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCc
Q 005499 456 V--LKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPL 533 (693)
Q Consensus 456 ~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 533 (693)
. ...|..........|+++...-.+++++--.. .....|...+......|+.+-|-..+..+.+..-
T Consensus 294 ~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA--~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~--------- 362 (577)
T KOG1258|consen 294 QAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCA--LYDEFWIKYARWMESSGDVSLANNVLARACKIHV--------- 362 (577)
T ss_pred HHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHh--hhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC---------
Confidence 1 13456666666777888888888888776555 4567777778777777888777777777766642
Q ss_pred ccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHH---HHHHHHhh
Q 005499 534 RCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALR---AYINALLI 610 (693)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~---~~~~al~~ 610 (693)
+..+.+...-+..-...|++..|...+++.....|+...+-........++|+.+.+.. .+.....-
T Consensus 363 ----------k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~ 432 (577)
T KOG1258|consen 363 ----------KKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG 432 (577)
T ss_pred ----------CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc
Confidence 23356666667777778888888888888887778877777777777777888777773 22222221
Q ss_pred C--CC-ChhHHHHHHHHHHH-hCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 005499 611 E--PS-YVPCKVLVGSLFSK-LGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDG 665 (693)
Q Consensus 611 ~--p~-~~~~~~~la~~~~~-~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 665 (693)
. +. ....+...+..... .++.+ .|...+.+++...|.+...+..+-.+....+
T Consensus 433 ~~~~~i~~~l~~~~~r~~~~i~~d~~--~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 433 KENNGILEKLYVKFARLRYKIREDAD--LARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred ccCcchhHHHHHHHHHHHHHHhcCHH--HHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 1 11 12234444444333 34445 8888888888888888777777766666555
No 215
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.20 E-value=7.4e-05 Score=60.02 Aligned_cols=97 Identities=22% Similarity=0.205 Sum_probs=87.3
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCC----HHHHHHHHH
Q 005499 584 LHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTN----RKAWYYLGL 659 (693)
Q Consensus 584 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~----~~~~~~lg~ 659 (693)
+-..|......|+.+.|++.|.+++.+.|..+.++++.+..+.-+|+.+ +|+..+++++++..+. ..++...|.
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e--~ALdDLn~AleLag~~trtacqa~vQRg~ 123 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDE--EALDDLNKALELAGDQTRTACQAFVQRGL 123 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChH--HHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 4566888899999999999999999999999999999999999999999 9999999999986543 356788999
Q ss_pred HHHHcCChHHHHHHHHHHHhccc
Q 005499 660 VHKDDGRIADAADCFQAASMLEE 682 (693)
Q Consensus 660 ~~~~~g~~~~A~~~~~~al~l~p 682 (693)
+|..+|+-+.|..-|+.|-++..
T Consensus 124 lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 124 LYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHhCchHHHHHhHHHHHHhCC
Confidence 99999999999999999887643
No 216
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.19 E-value=1.2e-05 Score=69.11 Aligned_cols=90 Identities=20% Similarity=0.181 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCC--------hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--
Q 005499 597 THEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKA--------LPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGR-- 666 (693)
Q Consensus 597 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--------l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-- 666 (693)
++.|.+.++.....+|.+++.+++-|.++.++.++. +++|+.-|++++.++|+..++++.+|.+|...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 578888899989999999999999888888775542 4579999999999999999999999999887664
Q ss_pred ---------hHHHHHHHHHHHhcccCCCC
Q 005499 667 ---------IADAADCFQAASMLEESDPI 686 (693)
Q Consensus 667 ---------~~~A~~~~~~al~l~p~~~~ 686 (693)
|++|.++|++|.+.+|+|+.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 78899999999999998864
No 217
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.18 E-value=0.00034 Score=70.73 Aligned_cols=102 Identities=23% Similarity=0.224 Sum_probs=90.8
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhCCCCh-hHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 005499 585 HTEGVMHEGCGQTHEALRAYINALLIEPSYV-PCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKD 663 (693)
Q Consensus 585 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 663 (693)
+.-|..+...|+...|++++..++...|... ..+.+|+.++...|-.. .|-.++.+++.+....|-.++.+|..+..
T Consensus 611 n~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~--da~~~l~q~l~~~~sepl~~~~~g~~~l~ 688 (886)
T KOG4507|consen 611 NEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHL--DATKLLLQALAINSSEPLTFLSLGNAYLA 688 (886)
T ss_pred ecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhc--cHHHHHHHHHhhcccCchHHHhcchhHHH
Confidence 3345566778999999999999999888654 46889999999999888 99999999999998889999999999999
Q ss_pred cCChHHHHHHHHHHHhcccCCCCCc
Q 005499 664 DGRIADAADCFQAASMLEESDPIES 688 (693)
Q Consensus 664 ~g~~~~A~~~~~~al~l~p~~~~~~ 688 (693)
+.+.+.|++.|+.|++++|++|+..
T Consensus 689 l~~i~~a~~~~~~a~~~~~~~~~~~ 713 (886)
T KOG4507|consen 689 LKNISGALEAFRQALKLTTKCPECE 713 (886)
T ss_pred HhhhHHHHHHHHHHHhcCCCChhhH
Confidence 9999999999999999999999753
No 218
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=6.4e-06 Score=73.50 Aligned_cols=95 Identities=15% Similarity=0.137 Sum_probs=71.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhC
Q 005499 550 WHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLG 629 (693)
Q Consensus 550 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 629 (693)
+..-|..++...+|..|+.+|.+++.++|..+..|.+.+.++++..+++.+.....++++++|+.+.+++.+|.......
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK 92 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc
Confidence 34456666667777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCChHHHHHHHHHHHhh
Q 005499 630 PKALPVARSLLSDALRI 646 (693)
Q Consensus 630 ~~~l~~A~~~~~~al~~ 646 (693)
.++ +|+..+.++..+
T Consensus 93 ~~~--eaI~~Lqra~sl 107 (284)
T KOG4642|consen 93 GYD--EAIKVLQRAYSL 107 (284)
T ss_pred ccc--HHHHHHHHHHHH
Confidence 777 777777777543
No 219
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.04 E-value=0.0005 Score=68.89 Aligned_cols=180 Identities=19% Similarity=0.177 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHH---HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 005499 410 SEALKSLDGASTFENNNADLFFDL---EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDE 486 (693)
Q Consensus 410 ~~A~~~~~~al~~~p~~~~~~~~l---~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 486 (693)
+.-++.-++|++++|+..+++.-+ ......+|..+++++++...... .........|..-+.. ..+ ..
T Consensus 185 ~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~l-----g~s~~~~~~g~~~e~~--~~R--dt 255 (539)
T PF04184_consen 185 QARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKAGEASL-----GKSQFLQHHGHFWEAW--HRR--DT 255 (539)
T ss_pred HHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHHHHhh-----chhhhhhcccchhhhh--hcc--cc
Confidence 677778888999999999888888 56668899999999887644321 1111111112111110 111 11
Q ss_pred cCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHH
Q 005499 487 TTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDV 566 (693)
Q Consensus 487 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 566 (693)
++ ...+...++.+..+.|+.++|++.++.+++.+|.. ++..+..++..++...+.+.++
T Consensus 256 ~~---~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~------------------~~l~IrenLie~LLelq~Yad~ 314 (539)
T PF04184_consen 256 NV---LVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL------------------DNLNIRENLIEALLELQAYADV 314 (539)
T ss_pred ch---hhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc------------------chhhHHHHHHHHHHhcCCHHHH
Confidence 12 34566789999999999999999999999877532 2367889999999999999999
Q ss_pred HHHHHHHHhh-CCCCHHHHHHHHHHHHHC-CC---------------hHHHHHHHHHHHhhCCCChhHHH
Q 005499 567 AICMGKAREL-KAYSAEMLHTEGVMHEGC-GQ---------------THEALRAYINALLIEPSYVPCKV 619 (693)
Q Consensus 567 ~~~~~~al~~-~p~~~~~~~~lg~~~~~~-g~---------------~~~A~~~~~~al~~~p~~~~~~~ 619 (693)
...+.+.-.+ -|.++...+..+.+..+. ++ -..|.+...+|++.+|.-+..+.
T Consensus 315 q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 315 QALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred HHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 9998886544 366676666665544331 11 13467888899998887765443
No 220
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.03 E-value=0.019 Score=57.06 Aligned_cols=125 Identities=16% Similarity=0.071 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHhCCC-hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHH--HHHHHHh---------hCC--
Q 005499 547 FQVWHGLANLYSGLSH-WKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALR--AYINALL---------IEP-- 612 (693)
Q Consensus 547 ~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~--~~~~al~---------~~p-- 612 (693)
+.-+..-|.-+.+.|. -++|+..++.++...|.+....... ..+-...|.+|+. .+.+.+. +.|
T Consensus 379 vh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v--~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~ 456 (549)
T PF07079_consen 379 VHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIV--FLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPIT 456 (549)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHH--HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCccc
Confidence 3344555666777776 7889999999999888876543221 1111122333322 1111111 122
Q ss_pred -CChhHHHHHHHH--HHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 005499 613 -SYVPCKVLVGSL--FSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQA 676 (693)
Q Consensus 613 -~~~~~~~~la~~--~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 676 (693)
.+.+.-+.|+.+ ++..|++. ++.-+-.=..++.| ++.++..+|.++....+|++|.+++..
T Consensus 457 i~e~eian~LaDAEyLysqgey~--kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 457 ISEEEIANFLADAEYLYSQGEYH--KCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred ccHHHHHHHHHHHHHHHhcccHH--HHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 223444555443 55688888 88877776778889 899999999999999999999999874
No 221
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=0.015 Score=63.26 Aligned_cols=238 Identities=14% Similarity=0.063 Sum_probs=134.1
Q ss_pred HhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChHHHHHH--HhCCHHHHHHHHHHHHHhcCCCcHHH
Q 005499 382 GVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNADLFFDL--EQRNLSTALRYAKQYIDATGGSVLKG 459 (693)
Q Consensus 382 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l--~~~~~~~A~~~~~~al~~~p~~~~~~ 459 (693)
+..|..+|.+....|.. .+|++.|-++- +|.+..-.... +.|.|++-++++..+-+...+. ..
T Consensus 1104 p~vWsqlakAQL~~~~v-----------~dAieSyikad--Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~--~i 1168 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLV-----------KDAIESYIKAD--DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP--YI 1168 (1666)
T ss_pred hHHHHHHHHHHHhcCch-----------HHHHHHHHhcC--CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc--cc
Confidence 78899999999999999 99999998762 34333222222 8899999998888776644332 22
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhcCC-----------------------CCchHHHHHHHHHHHHhCChhHHHHHH
Q 005499 460 WKLLALVLSAQQRFSEAEVVTDAALDETTK-----------------------WEQGPILRLKAKLKIAQALPMDAIETY 516 (693)
Q Consensus 460 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~ 516 (693)
-..+..+|.+.++..+-.+.+. .|. +.+..-|..++..+...|+|..|....
T Consensus 1169 d~eLi~AyAkt~rl~elE~fi~-----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1169 DSELIFAYAKTNRLTELEEFIA-----GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred hHHHHHHHHHhchHHHHHHHhc-----CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 2233344445555444333221 120 012223444555555555555555544
Q ss_pred HHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC
Q 005499 517 RYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQ 596 (693)
Q Consensus 517 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 596 (693)
+++-. ..+|.....++...+.+.-|.-|--..+ -+++-+-.+...|...|-
T Consensus 1244 RKAns-------------------------~ktWK~VcfaCvd~~EFrlAQiCGL~ii----vhadeLeeli~~Yq~rGy 1294 (1666)
T KOG0985|consen 1244 RKANS-------------------------TKTWKEVCFACVDKEEFRLAQICGLNII----VHADELEELIEYYQDRGY 1294 (1666)
T ss_pred hhccc-------------------------hhHHHHHHHHHhchhhhhHHHhcCceEE----EehHhHHHHHHHHHhcCc
Confidence 44322 2455555555554444443332211100 123345566677888888
Q ss_pred hHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCChH
Q 005499 597 THEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRI--------EPTNRKAWYYLGLVHKDDGRIA 668 (693)
Q Consensus 597 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~ 668 (693)
+++-+..++.++.+...+...+..||.+|.+-.- + +-.++++-.... .-+....|..+..+|.+-..|+
T Consensus 1295 FeElIsl~Ea~LGLERAHMgmfTELaiLYskykp-~--km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyD 1371 (1666)
T KOG0985|consen 1295 FEELISLLEAGLGLERAHMGMFTELAILYSKYKP-E--KMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYD 1371 (1666)
T ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcCH-H--HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 8998988888888887777778888888776532 2 333333322211 0112345666666666666665
Q ss_pred HHH
Q 005499 669 DAA 671 (693)
Q Consensus 669 ~A~ 671 (693)
.|.
T Consensus 1372 NAa 1374 (1666)
T KOG0985|consen 1372 NAA 1374 (1666)
T ss_pred HHH
Confidence 553
No 222
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.00058 Score=61.13 Aligned_cols=182 Identities=14% Similarity=0.055 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHhCCHHHHHHHHHHHHHh----cC-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005499 410 SEALKSLDGASTFENNNADLFFDLEQRNLSTALRYAKQYIDA----TG-GSVLKGWKLLALVLSAQQRFSEAEVVTDAAL 484 (693)
Q Consensus 410 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~A~~~~~~al~~----~p-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 484 (693)
++|.+.|.++-.... ...+++.|-..|.++-+. +. ++....+...+.+|.+ .+.++|..++++++
T Consensus 31 eeAadl~~~Aan~yk---------laK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~eAv~cL~~ai 100 (288)
T KOG1586|consen 31 EEAAELYERAANMYK---------LAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAI 100 (288)
T ss_pred HHHHHHHHHHHHHHH---------HHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHH
Confidence 888888887753211 244556666666665443 22 2232445556666554 59999999999999
Q ss_pred hhcCCCCchHH------HHHHHHHHHHh-CChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHH
Q 005499 485 DETTKWEQGPI------LRLKAKLKIAQ-ALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLY 557 (693)
Q Consensus 485 ~~~p~~~~~~~------~~~l~~~~~~~-g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 557 (693)
++.. +.... +..+|.+|..- .++++|+.+|+++-+.+.... .....-.++.-.+..-
T Consensus 101 eIyt--~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ee--------------s~ssANKC~lKvA~ya 164 (288)
T KOG1586|consen 101 EIYT--DMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEE--------------SVSSANKCLLKVAQYA 164 (288)
T ss_pred HHHH--hhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchh--------------hhhhHHHHHHHHHHHH
Confidence 9876 44332 44788888776 899999999999988775442 1122245666777778
Q ss_pred HhCCChHHHHHHHHHHHhhCCCCHH-------HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhH
Q 005499 558 SGLSHWKDVAICMGKARELKAYSAE-------MLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPC 617 (693)
Q Consensus 558 ~~~~~~~~A~~~~~~al~~~p~~~~-------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 617 (693)
...++|.+|+..|++.....-+++. .++.-|.|+....+.-.+...+++-..++|.....
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 8899999999999998876555542 35667888888889888888999999999987654
No 223
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.98 E-value=7.2e-06 Score=50.33 Aligned_cols=32 Identities=22% Similarity=0.398 Sum_probs=26.0
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCChHHHH
Q 005499 640 LSDALRIEPTNRKAWYYLGLVHKDDGRIADAA 671 (693)
Q Consensus 640 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 671 (693)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67788888888888888888888888888775
No 224
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.98 E-value=6.8e-05 Score=73.18 Aligned_cols=136 Identities=17% Similarity=0.137 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-CCChHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q 005499 548 QVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEG-CGQTHEALRAYINALLIEPSYVPCKVLVGSLFS 626 (693)
Q Consensus 548 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 626 (693)
-+|..+.....+.+..+.|..+|.++.+..+....+|...|.+... .++.+.|...|+.+++..|.+...|......+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3677777888888889999999999997767778899999999777 556666999999999999999999999999999
Q ss_pred HhCCCChHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCC
Q 005499 627 KLGPKALPVARSLLSDALRIEPTNR---KAWYYLGLVHKDDGRIADAADCFQAASMLEESDP 685 (693)
Q Consensus 627 ~~g~~~l~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 685 (693)
..|+.+ .|+.+|++++..-|... ..|......-...|+.+......+++.+..|+++
T Consensus 82 ~~~d~~--~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 82 KLNDIN--NARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HTT-HH--HHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HhCcHH--HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 999887 99999999999876654 6888899999999999999999999999888754
No 225
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=0.00079 Score=60.33 Aligned_cols=134 Identities=16% Similarity=0.134 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHC-CChHHHHHHHHHHHhhCCCC------h
Q 005499 549 VWHGLANLYSGLSHWKDVAICMGKARELKAYSA------EMLHTEGVMHEGC-GQTHEALRAYINALLIEPSY------V 615 (693)
Q Consensus 549 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~------~ 615 (693)
++...+.+|.+. ++.+|..++++++.+..+-. .-+..+|.+|... .++++|+.+|+++-+..... .
T Consensus 76 ~YveA~~cykk~-~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssAN 154 (288)
T KOG1586|consen 76 TYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSAN 154 (288)
T ss_pred HHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHH
Confidence 333333333333 56666666666665543321 2234556665544 56666666666665433221 1
Q ss_pred hHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHH-------HHHHHHHHHHHcCChHHHHHHHHHHHhcccCCC
Q 005499 616 PCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRK-------AWYYLGLVHKDDGRIADAADCFQAASMLEESDP 685 (693)
Q Consensus 616 ~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~-------~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 685 (693)
.++...+..-..++++. +|+..|+++....-+++- -.+.-|.++.-.++.-.+...+++-.+++|+..
T Consensus 155 KC~lKvA~yaa~leqY~--~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 155 KCLLKVAQYAAQLEQYS--KAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence 23444555555566666 666666666654444332 223345555555665555566666666666543
No 226
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.96 E-value=1.7e-05 Score=52.46 Aligned_cols=38 Identities=21% Similarity=0.111 Sum_probs=15.2
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHH
Q 005499 584 LHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLV 621 (693)
Q Consensus 584 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 621 (693)
+..+|.++...|++++|+..|+++++.+|+++.+|..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 33334444444444444444444444444444333333
No 227
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=3.3e-05 Score=69.07 Aligned_cols=101 Identities=22% Similarity=0.208 Sum_probs=91.2
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 005499 584 LHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKD 663 (693)
Q Consensus 584 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 663 (693)
+-.-|..++...+|..|+.+|.+++.++|..+..+.+.+.+++++.+++ .+....++++++.|+...+++.+|.....
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~--~v~~dcrralql~~N~vk~h~flg~~~l~ 90 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWE--PVEEDCRRALQLDPNLVKAHYFLGQWLLQ 90 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhh--hhhhhHHHHHhcChHHHHHHHHHHHHHHh
Confidence 3445677788889999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhcccCCCC
Q 005499 664 DGRIADAADCFQAASMLEESDPI 686 (693)
Q Consensus 664 ~g~~~~A~~~~~~al~l~p~~~~ 686 (693)
...+++|+.++++|..+....|.
T Consensus 91 s~~~~eaI~~Lqra~sl~r~~~~ 113 (284)
T KOG4642|consen 91 SKGYDEAIKVLQRAYSLLREQPF 113 (284)
T ss_pred hccccHHHHHHHHHHHHHhcCCC
Confidence 99999999999999876554443
No 228
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.91 E-value=2.5e-05 Score=51.61 Aligned_cols=42 Identities=19% Similarity=0.255 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 005499 548 QVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGV 589 (693)
Q Consensus 548 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 589 (693)
.+|..+|.+|...|++++|+.+|+++++.+|+++.+|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 578999999999999999999999999999999999999885
No 229
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.88 E-value=0.05 Score=59.88 Aligned_cols=313 Identities=16% Similarity=0.029 Sum_probs=174.5
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCC-cchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHH
Q 005499 342 LMALLLAAKICSEDCHLAAEGIQYARTALSNAQGKD-EHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGAS 420 (693)
Q Consensus 342 ~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 420 (693)
....+.+|.+++..-+..++|..++.+++....... ....-.+...++.++.+.+.. . |+..+++.+
T Consensus 59 a~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~-----------~-a~~~l~~~I 126 (608)
T PF10345_consen 59 ARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK-----------A-ALKNLDKAI 126 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH-----------H-HHHHHHHHH
Confidence 334445555555444444455555555555443211 112344455566666666655 4 666666666
Q ss_pred hcCCC---ChHH-HHHH-------HhCCHHHHHHHHHHHHHhc--CCCcHHH----HHHHHHHHHHcCChHHHHHHHHHH
Q 005499 421 TFENN---NADL-FFDL-------EQRNLSTALRYAKQYIDAT--GGSVLKG----WKLLALVLSAQQRFSEAEVVTDAA 483 (693)
Q Consensus 421 ~~~p~---~~~~-~~~l-------~~~~~~~A~~~~~~al~~~--p~~~~~~----~~~la~~~~~~g~~~~A~~~~~~a 483 (693)
+...+ .... .+.+ ..+++..|+..++...... +.++ .+ ....+.++...+..+++++.++++
T Consensus 127 ~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~-~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~ 205 (608)
T PF10345_consen 127 EDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDP-AVFVLASLSEALLHLRRGSPDDVLELLQRA 205 (608)
T ss_pred HHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCH-HHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Confidence 43322 1111 1111 2368888888888877765 3443 22 233456667778888888888877
Q ss_pred HhhcC------CC--CchHHHHHHHH--HHHHhCChhHHHHHHHHHHHHHHhhhhh--cC---Cccc-------------
Q 005499 484 LDETT------KW--EQGPILRLKAK--LKIAQALPMDAIETYRYLLALVQAQRKS--FG---PLRC------------- 535 (693)
Q Consensus 484 l~~~p------~~--~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~l~~~~~~~~~--~~---~~~~------------- 535 (693)
..... .. ....+|..+.. +....|++..+...++++-..-...... |. ....
T Consensus 206 ~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~ 285 (608)
T PF10345_consen 206 IAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSG 285 (608)
T ss_pred HHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCC
Confidence 44221 00 13344554444 4455677777776665554433222211 11 1111
Q ss_pred ----ccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-------CCC-------------------HHHHH
Q 005499 536 ----LSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELK-------AYS-------------------AEMLH 585 (693)
Q Consensus 536 ----~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~-------------------~~~~~ 585 (693)
+..+........-++..-|......+..++|.++++++++.- +.. ....+
T Consensus 286 ~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~ 365 (608)
T PF10345_consen 286 GTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLF 365 (608)
T ss_pred CceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHH
Confidence 111222222223444445666677777778888888876531 110 12345
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHhhC---CC------ChhHHHHHHHHHHHhCCCChHHHHHHHH--------HHHhhCC
Q 005499 586 TEGVMHEGCGQTHEALRAYINALLIE---PS------YVPCKVLVGSLFSKLGPKALPVARSLLS--------DALRIEP 648 (693)
Q Consensus 586 ~lg~~~~~~g~~~~A~~~~~~al~~~---p~------~~~~~~~la~~~~~~g~~~l~~A~~~~~--------~al~~~p 648 (693)
..+.+..-.+++..|....+.+.... |. .+..++..|..+...|+.+ .|...|. .+....+
T Consensus 366 y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~--~A~~~y~~~~~~~~~~~~~~~~ 443 (608)
T PF10345_consen 366 YQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLE--AALYQYQKPRFLLCEAANRKSK 443 (608)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHH--HHHHHHhhhHHhhhhhhccCCc
Confidence 67788888999999999988777643 22 2556777888888889988 9999998 3333333
Q ss_pred CCH---HHHHHHHHHHHHcCChHH
Q 005499 649 TNR---KAWYYLGLVHKDDGRIAD 669 (693)
Q Consensus 649 ~~~---~~~~~lg~~~~~~g~~~~ 669 (693)
.+. -+..++..++...+.-..
T Consensus 444 ~~El~ila~LNl~~I~~~~~~~~~ 467 (608)
T PF10345_consen 444 FRELYILAALNLAIILQYESSRDD 467 (608)
T ss_pred chHHHHHHHHHHHHHhHhhcccch
Confidence 332 234567777777666444
No 230
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=0.0011 Score=62.65 Aligned_cols=124 Identities=12% Similarity=0.064 Sum_probs=57.2
Q ss_pred HHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcc
Q 005499 465 LVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKV 544 (693)
Q Consensus 465 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 544 (693)
.+....|++.+|-...++.++..| .+.-++..--..+..+|+...-...+++++.... .+.|
T Consensus 111 ai~~~~g~~h~a~~~wdklL~d~P--tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn----------------~dlp 172 (491)
T KOG2610|consen 111 AILWGRGKHHEAAIEWDKLLDDYP--TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWN----------------ADLP 172 (491)
T ss_pred HHhhccccccHHHHHHHHHHHhCc--hhhhhhhhhhhHHHhccchhhhhhHHHHhccccC----------------CCCc
Confidence 334444444444444555555555 3444444444444444544444444444443311 1113
Q ss_pred cHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHH
Q 005499 545 NEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYIN 606 (693)
Q Consensus 545 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 606 (693)
....+.-.++-.+...|-+++|.+..+++++++|.+..+....+.++...|++.++.+.+.+
T Consensus 173 ~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 173 CYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 33333334444444555555555555555555555555555555555555555555544443
No 231
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.85 E-value=0.043 Score=55.33 Aligned_cols=408 Identities=12% Similarity=0.019 Sum_probs=207.1
Q ss_pred HHhhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHCCC-cHHHHHHHHHHhhccCCCC
Q 005499 262 KYHLGKIKWDPAVMEHLTYALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQ-NDAALNLLRKSLHKHERPN 340 (693)
Q Consensus 262 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~~~p~ 340 (693)
..+..+.+.|+.+|..-....-+.+.+.+....|..++..+|+++++|..-|.-.+.-+. .+.|..+|.+.++ .+|+
T Consensus 95 r~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR--~npd 172 (568)
T KOG2396|consen 95 RRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR--FNPD 172 (568)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh--cCCC
Confidence 344556677888888776666667779999999999999999999999999988888776 9999999999999 5699
Q ss_pred CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCC-cc-hh-HhHHHHHHHHHhhh-hcccCC---hHHHhHHHHH-H
Q 005499 341 DLMALLLAAKICSEDCHLAAEGIQYARTALSNAQGKD-EH-LK-GVGLRMLGLCLGRH-AKVSSS---DYERSRLQSE-A 412 (693)
Q Consensus 341 ~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~-~~-~~~~~~lg~~~~~~-~~~~~~---~~~~~~~~~~-A 412 (693)
++..+...-++-+... +-...-++.+.....+. .. .. ..++.....+.... +..... ..+......+ -
T Consensus 173 sp~Lw~eyfrmEL~~~----~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~ 248 (568)
T KOG2396|consen 173 SPKLWKEYFRMELMYA----EKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQ 248 (568)
T ss_pred ChHHHHHHHHHHHHHH----HHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHH
Confidence 8877654433322110 00000111111111000 00 00 01111111100000 000000 0111000011 1
Q ss_pred HHHHHHHHhcCCCChHHHHHH-------------------H-----hCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHH--
Q 005499 413 LKSLDGASTFENNNADLFFDL-------------------E-----QRNLSTALRYAKQYIDATGGSVLKGWKLLALV-- 466 (693)
Q Consensus 413 ~~~~~~al~~~p~~~~~~~~l-------------------~-----~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~-- 466 (693)
...+.-.....|.++..|..+ . ..+-+.....|+.+++--|.. ..|......
T Consensus 249 k~i~d~~~~~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~l~t~--sm~e~YI~~~l 326 (568)
T KOG2396|consen 249 KNIIDDLQSKAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKTLPTE--SMWECYITFCL 326 (568)
T ss_pred HHHHHHHhccCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHHhhHH--HHHHHHHHHHH
Confidence 112222224567777776666 0 011123344555555433322 222111111
Q ss_pred -H---HHcCChHHHHHHHHHHHhh---cCCCCchHHHHHHHHHHHHhCChhHHH-HHHHHHHHHHHhhhhh-cCCcc---
Q 005499 467 -L---SAQQRFSEAEVVTDAALDE---TTKWEQGPILRLKAKLKIAQALPMDAI-ETYRYLLALVQAQRKS-FGPLR--- 534 (693)
Q Consensus 467 -~---~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~l~~~~~~~~~-~~~~~--- 534 (693)
. ........-...++++... .+ ..+.-+..+..++.......++. ......+...-.-... +....
T Consensus 327 E~~~~~r~~~I~h~~~~~~~~~~~~~l~~--~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~ 404 (568)
T KOG2396|consen 327 ERFTFLRGKRILHTMCVFRKAHELKLLSE--CLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESK 404 (568)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHhccccc--chHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhc
Confidence 1 1112344555556655543 33 34445555555555544333221 1111222111000000 00000
Q ss_pred ----cccc----hhhhcc--cHHHHHHHHHHHHHhCCC-hHHHHH--HHHHHHh-hCCCCHHHHHHHHHHHHHCCChHHH
Q 005499 535 ----CLSQ----IEDDKV--NEFQVWHGLANLYSGLSH-WKDVAI--CMGKARE-LKAYSAEMLHTEGVMHEGCGQTHEA 600 (693)
Q Consensus 535 ----~~~~----~~~~~~--~~~~~~~~la~~~~~~~~-~~~A~~--~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A 600 (693)
.+.. .....+ .....|.... .++ ...... ++..+.. ..|+....-..+-..+...|-+.+|
T Consensus 405 sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~a 479 (568)
T KOG2396|consen 405 SDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESGGYKKA 479 (568)
T ss_pred chhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHH
Confidence 0000 000000 0011111111 122 111111 1111111 1334444444455667778889999
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-
Q 005499 601 LRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASM- 679 (693)
Q Consensus 601 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~- 679 (693)
...|.+...+-|-....+..+...-..+..-++.-++.+|..++.....+++.|...-..-...|..+.+-..|.+|++
T Consensus 480 rk~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 480 RKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred HHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhccCCCcccccHHHHHHHHh
Confidence 9999999998888777776666655444333344899999999999889999999888778899999999999999987
Q ss_pred cccCC
Q 005499 680 LEESD 684 (693)
Q Consensus 680 l~p~~ 684 (693)
++|+.
T Consensus 560 l~~~~ 564 (568)
T KOG2396|consen 560 LQGES 564 (568)
T ss_pred hChhh
Confidence 55543
No 232
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=9.9e-05 Score=66.27 Aligned_cols=106 Identities=17% Similarity=0.085 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHhh--------CCCCH----------HHHHHHHHHHHHCCChHHHHHHHHHH
Q 005499 546 EFQVWHGLANLYSGLSHWKDVAICMGKAREL--------KAYSA----------EMLHTEGVMHEGCGQTHEALRAYINA 607 (693)
Q Consensus 546 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~----------~~~~~lg~~~~~~g~~~~A~~~~~~a 607 (693)
...++..-|+-++..|++.+|...|+.|+.. .|.++ ..+.+...|+...|+|-++++.....
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 3778888999999999999999999998743 45443 45677888888888888888888888
Q ss_pred HhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHH
Q 005499 608 LLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKA 653 (693)
Q Consensus 608 l~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~ 653 (693)
+..+|.+..+++..|.+....=+.. +|...|.++++++|.-..+
T Consensus 257 L~~~~~nvKA~frRakAhaa~Wn~~--eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 257 LRHHPGNVKAYFRRAKAHAAVWNEA--EAKADLQKVLELDPSLASV 300 (329)
T ss_pred HhcCCchHHHHHHHHHHHHhhcCHH--HHHHHHHHHHhcChhhHHH
Confidence 8888888888888888887777766 8888888888888875443
No 233
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.83 E-value=3.6e-05 Score=47.63 Aligned_cols=34 Identities=32% Similarity=0.619 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCC
Q 005499 651 RKAWYYLGLVHKDDGRIADAADCFQAASMLEESD 684 (693)
Q Consensus 651 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 684 (693)
+.+|+.+|.++..+|++++|+++|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4678999999999999999999999999999975
No 234
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.82 E-value=2.7e-05 Score=48.16 Aligned_cols=34 Identities=26% Similarity=0.381 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCC
Q 005499 651 RKAWYYLGLVHKDDGRIADAADCFQAASMLEESD 684 (693)
Q Consensus 651 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 684 (693)
+.+|+.+|.++..+|++++|+.+|++|++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4678999999999999999999999999999874
No 235
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.81 E-value=0.00087 Score=65.47 Aligned_cols=136 Identities=10% Similarity=0.029 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHh-CChhHHHHHHHHHHHHHHhhhhhcCCcccc
Q 005499 458 KGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQ-ALPMDAIETYRYLLALVQAQRKSFGPLRCL 536 (693)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 536 (693)
-+|..+.....+.+..+.|..+|.+++...+ ....+|...|.+.... ++.+.|..+|+.+++..|.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~--~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~---------- 69 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR--CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD---------- 69 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-----------
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC----------
Confidence 3566666777777778888888888886555 5677888888886664 55555888888888887443
Q ss_pred cchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 005499 537 SQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSA---EMLHTEGVMHEGCGQTHEALRAYINALLIEPS 613 (693)
Q Consensus 537 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 613 (693)
...|......+...|+.+.|..+|++++..-|... .+|..........|+.+......+++....|.
T Consensus 70 ----------~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 70 ----------PDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp ----------HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred ----------HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 67788888888888888888888888887765544 57777777888888888888888888887776
Q ss_pred Ch
Q 005499 614 YV 615 (693)
Q Consensus 614 ~~ 615 (693)
..
T Consensus 140 ~~ 141 (280)
T PF05843_consen 140 DN 141 (280)
T ss_dssp S-
T ss_pred hh
Confidence 43
No 236
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.79 E-value=0.0023 Score=64.26 Aligned_cols=101 Identities=17% Similarity=0.179 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHhhCCC--ChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhh-CCCCHHHHHHHHH
Q 005499 583 MLHTEGVMHEGCGQTHEALRAYINALLIEPS--YVPCKVLVGSLFSKLGPKALPVARSLLSDALRI-EPTNRKAWYYLGL 659 (693)
Q Consensus 583 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~-~p~~~~~~~~lg~ 659 (693)
+...+|.+..+.|+.++|++.|+..++..|. +..+..+|..++..++.+. ++...+.+.-.+ -|.+....+.-+.
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Ya--d~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYA--DVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHH--HHHHHHHHhccccCCchHHHHHHHHH
Confidence 3344555555666666666666666555443 2335555556666666655 555555554322 2333333333333
Q ss_pred HHHH-------------cCC---hHHHHHHHHHHHhcccCCC
Q 005499 660 VHKD-------------DGR---IADAADCFQAASMLEESDP 685 (693)
Q Consensus 660 ~~~~-------------~g~---~~~A~~~~~~al~l~p~~~ 685 (693)
+-.+ .|- -..|.+.+.+|++.+|--|
T Consensus 339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 2211 111 1347788899999888655
No 237
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.017 Score=53.06 Aligned_cols=215 Identities=9% Similarity=0.124 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc-CChHHHHHHHHHHHhhcC
Q 005499 410 SEALKSLDGASTFENNNADLFFDLEQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQ-QRFSEAEVVTDAALDETT 488 (693)
Q Consensus 410 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p 488 (693)
.++..+|+..+..+... ..|+..-..++.++|.+. .+|...-.++..+ .+..+-++++.+.++.+|
T Consensus 43 r~~m~YfRAI~~~~E~S------------~RAl~LT~d~i~lNpAnY-TVW~yRr~iL~~l~~dL~~El~~l~eI~e~np 109 (318)
T KOG0530|consen 43 RDVMDYFRAIIAKNEKS------------PRALQLTEDAIRLNPANY-TVWQYRRVILRHLMSDLNKELEYLDEIIEDNP 109 (318)
T ss_pred HHHHHHHHHHHhccccC------------HHHHHHHHHHHHhCcccc-hHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCc
Confidence 66777777666554433 456777777788888887 7776666555544 356677788888888888
Q ss_pred CCCchHHHHHHHHHHHHhCChh-HHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHH
Q 005499 489 KWEQGPILRLKAKLKIAQALPM-DAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVA 567 (693)
Q Consensus 489 ~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 567 (693)
.+..+|...-.+....|++. .-++..+.++..+ ..+..+|...-.+...-+.++.-+
T Consensus 110 --KNYQvWHHRr~ive~l~d~s~rELef~~~~l~~D--------------------aKNYHaWshRqW~~r~F~~~~~EL 167 (318)
T KOG0530|consen 110 --KNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDD--------------------AKNYHAWSHRQWVLRFFKDYEDEL 167 (318)
T ss_pred --cchhHHHHHHHHHHHhcCcccchHHHHHHHHhcc--------------------ccchhhhHHHHHHHHHHhhHHHHH
Confidence 67788877777777777777 6677777777765 333577777777777777788888
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHH-CC-----ChHHHHHHHHHHHhhCCCChhHHHHHHHHHHH-hC--CCChHHHHH
Q 005499 568 ICMGKARELKAYSAEMLHTEGVMHEG-CG-----QTHEALRAYINALLIEPSYVPCKVLVGSLFSK-LG--PKALPVARS 638 (693)
Q Consensus 568 ~~~~~al~~~p~~~~~~~~lg~~~~~-~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g--~~~l~~A~~ 638 (693)
.+..+.++.+-.+-.+|...-.+... .| ..+.-+.+..+.+...|++..+|+.|.-++.. .| ... .-..
T Consensus 168 ~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s--~vv~ 245 (318)
T KOG0530|consen 168 AYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDS--KVVS 245 (318)
T ss_pred HHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCc--hHHH
Confidence 88888887766666666543222222 11 13344566677778888888888888777775 44 123 3444
Q ss_pred HHHHHH-hhCCCCHHHHHHHHHHH
Q 005499 639 LLSDAL-RIEPTNRKAWYYLGLVH 661 (693)
Q Consensus 639 ~~~~al-~~~p~~~~~~~~lg~~~ 661 (693)
.....+ +....+|..+-.+..+|
T Consensus 246 f~~~l~~~~~~~sP~lla~l~d~~ 269 (318)
T KOG0530|consen 246 FVENLYLQLPKRSPFLLAFLLDLY 269 (318)
T ss_pred HHHHHhhccCCCChhHHHHHHHHH
Confidence 444443 33334555555555555
No 238
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.75 E-value=3.1e-05 Score=47.50 Aligned_cols=32 Identities=28% Similarity=0.243 Sum_probs=19.3
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHCCChHHHH
Q 005499 570 MGKARELKAYSAEMLHTEGVMHEGCGQTHEAL 601 (693)
Q Consensus 570 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 601 (693)
|+++++++|+++.+|+++|.++...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45566666666666666666666666666554
No 239
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.74 E-value=0.003 Score=66.43 Aligned_cols=178 Identities=11% Similarity=0.050 Sum_probs=129.8
Q ss_pred HHHHHHhcCCCChHHHHHH--HhCCHHHHHHHHHHHHHhcCCCcHHH-H-----HHHHHHHH----HcCChHHHHHHHHH
Q 005499 415 SLDGASTFENNNADLFFDL--EQRNLSTALRYAKQYIDATGGSVLKG-W-----KLLALVLS----AQQRFSEAEVVTDA 482 (693)
Q Consensus 415 ~~~~al~~~p~~~~~~~~l--~~~~~~~A~~~~~~al~~~p~~~~~~-~-----~~la~~~~----~~g~~~~A~~~~~~ 482 (693)
.|.-++.+-|....-...+ -.||-+.++..+.++.+...-...-+ + +.....+. .....+.|.++++.
T Consensus 179 ~f~L~lSlLPp~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~ 258 (468)
T PF10300_consen 179 LFNLVLSLLPPKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEE 258 (468)
T ss_pred HHHHHHHhCCHHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHH
Confidence 4444555555444333333 67899999999999876322111011 1 11111111 24567889999999
Q ss_pred HHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCC
Q 005499 483 ALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSH 562 (693)
Q Consensus 483 al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 562 (693)
.....| +..-.++..|+++...|+.++|++.|++++......+ ....-.++.++.++..+.+
T Consensus 259 ~~~~yP--~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~----------------Ql~~l~~~El~w~~~~~~~ 320 (468)
T PF10300_consen 259 MLKRYP--NSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWK----------------QLHHLCYFELAWCHMFQHD 320 (468)
T ss_pred HHHhCC--CcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHH----------------hHHHHHHHHHHHHHHHHch
Confidence 999999 7888899999999999999999999999885433332 2335678899999999999
Q ss_pred hHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHCCCh-------HHHHHHHHHHHhh
Q 005499 563 WKDVAICMGKARELKAYSAE-MLHTEGVMHEGCGQT-------HEALRAYINALLI 610 (693)
Q Consensus 563 ~~~A~~~~~~al~~~p~~~~-~~~~lg~~~~~~g~~-------~~A~~~~~~al~~ 610 (693)
|++|..++.+..+.+..+.. ..+..|.++...|+. ++|..+|.++-..
T Consensus 321 w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 321 WEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 99999999999998766543 467788999999999 8888888877543
No 240
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.71 E-value=0.017 Score=59.17 Aligned_cols=135 Identities=16% Similarity=0.123 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCC--CchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhh-hh-----
Q 005499 458 KGWKLLALVLSAQQRFSEAEVVTDAALDETTKW--EQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQR-KS----- 529 (693)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~-~~----- 529 (693)
..|...+.+....|+++.|...+.++....+.. ..+.+.+..+.++...|+..+|+..++..+....... ..
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~ 226 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAE 226 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHH
Confidence 789999999999999999999999988865311 1467788899999999999999999999988332221 00
Q ss_pred cCCc-----ccc---cchhhhcccHHHHHHHHHHHHHhC------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 005499 530 FGPL-----RCL---SQIEDDKVNEFQVWHGLANLYSGL------SHWKDVAICMGKARELKAYSAEMLHTEGVMHE 592 (693)
Q Consensus 530 ~~~~-----~~~---~~~~~~~~~~~~~~~~la~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 592 (693)
.... ... ............++..+|...... +..+++...|.+++...|....+|+.+|..+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 227 LKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFND 303 (352)
T ss_pred HhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence 0000 000 000111122345566666665555 66666666666666666666666666665543
No 241
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.0033 Score=59.52 Aligned_cols=159 Identities=11% Similarity=-0.030 Sum_probs=122.2
Q ss_pred HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-cCCCCc---hHHHHHHHHHHHHhCCh
Q 005499 434 EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDE-TTKWEQ---GPILRLKAKLKIAQALP 509 (693)
Q Consensus 434 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~---~~~~~~l~~~~~~~g~~ 509 (693)
..|+..+|...+++.++-.|.+. -++..--.+++.+|+...-...+++.+.. ++ +. ..+.-..+..+...|-|
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDl-la~kfsh~a~fy~G~~~~~k~ai~kIip~wn~--dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDL-LAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNA--DLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhh-hhhhhhhhHHHhccchhhhhhHHHHhccccCC--CCcHHHHHHHHHHhhHHHhccc
Confidence 67888888888999999999987 78888888899999999999999988876 44 33 34455677788889999
Q ss_pred hHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCH----HHHH
Q 005499 510 MDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSA----EMLH 585 (693)
Q Consensus 510 ~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~ 585 (693)
++|.+..+++++++| .+.-+...++.++...|++.++.+...+.-..-.... .-|.
T Consensus 192 ~dAEk~A~ralqiN~--------------------~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyW 251 (491)
T KOG2610|consen 192 DDAEKQADRALQINR--------------------FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYW 251 (491)
T ss_pred hhHHHHHHhhccCCC--------------------cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhH
Confidence 999999999999984 4467778888889999999999998877554332211 1244
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHh--hCCCCh
Q 005499 586 TEGVMHEGCGQTHEALRAYINALL--IEPSYV 615 (693)
Q Consensus 586 ~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~ 615 (693)
..+.++...+.|+.|++.|.+-+- +..++.
T Consensus 252 H~Al~~iE~aeye~aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 252 HTALFHIEGAEYEKALEIYDREIWKRLEKDDA 283 (491)
T ss_pred HHHHhhhcccchhHHHHHHHHHHHHHhhccch
Confidence 567788888999999999987653 344444
No 242
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.0051 Score=55.71 Aligned_cols=166 Identities=14% Similarity=0.141 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCC---CchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcc
Q 005499 458 KGWKLLALVLSAQQRFSEAEVVTDAALDETTKW---EQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLR 534 (693)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~ 534 (693)
.++-..+.+......+.++..+++++....-.. +....-...+--....-++++|+++|++++.+.....
T Consensus 72 KayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~d------- 144 (308)
T KOG1585|consen 72 KAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDD------- 144 (308)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccc-------
Confidence 344445555566667777777777776543200 2222233334444555688999999999998864431
Q ss_pred cccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 005499 535 CLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKAREL------KAYSAEMLHTEGVMHEGCGQTHEALRAYINAL 608 (693)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 608 (693)
......+.+...+.++.+..++.+|-..+.+-... .+..-..+.....++.-..+|..|..+|+..-
T Consensus 145 -------r~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~ 217 (308)
T KOG1585|consen 145 -------RDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCS 217 (308)
T ss_pred -------hHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchh
Confidence 11233566777888999999999988877764332 23333345555566677779999999999876
Q ss_pred hh----CCCChhHHHHHHHHHHHhCCCChHHHHHHH
Q 005499 609 LI----EPSYVPCKVLVGSLFSKLGPKALPVARSLL 640 (693)
Q Consensus 609 ~~----~p~~~~~~~~la~~~~~~g~~~l~~A~~~~ 640 (693)
++ .|++..+..+|-..| ..|+.+ +....+
T Consensus 218 qip~f~~sed~r~lenLL~ay-d~gD~E--~~~kvl 250 (308)
T KOG1585|consen 218 QIPAFLKSEDSRSLENLLTAY-DEGDIE--EIKKVL 250 (308)
T ss_pred cCccccChHHHHHHHHHHHHh-ccCCHH--HHHHHH
Confidence 65 345555666665544 445544 555544
No 243
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.011 Score=53.70 Aligned_cols=199 Identities=12% Similarity=0.034 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhcCC----CCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCc
Q 005499 458 KGWKLLALVLSAQQRFSEAEVVTDAALDETTK----WEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPL 533 (693)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 533 (693)
..+..-+..|...++|++|...+.++.+-+.. |.-...+-..+.+......+.++..+|+++...+..+.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G------ 105 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG------ 105 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC------
Confidence 44556677888889999999999998865541 01123445566777778889999999999998875542
Q ss_pred ccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHCCChHHHHHHHHHH
Q 005499 534 RCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYS------AEMLHTEGVMHEGCGQTHEALRAYINA 607 (693)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~a 607 (693)
.|..+..-...+--.....++++|+.+|++++.+...+ .+.+-..++++.+...+++|-..+.+-
T Consensus 106 ---------spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe 176 (308)
T KOG1585|consen 106 ---------SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKE 176 (308)
T ss_pred ---------CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHh
Confidence 23333334444445567788999999999998774332 345667788899999999998887764
Q ss_pred Hhh----C--CCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 005499 608 LLI----E--PSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRI----EPTNRKAWYYLGLVHKDDGRIADAADCF 674 (693)
Q Consensus 608 l~~----~--p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 674 (693)
... + |+....+.....+|+...++. .|..+++..-++ .|++..+..+|-..| ..|+.++.....
T Consensus 177 ~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv--~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 177 GVAADKCDAYNSQCKAYVAAILVYLYAHDYV--QAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred hhHHHHHhhcccHHHHHHHHHHHHhhHHHHH--HHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 332 2 333334555555566666777 999999987664 344555666665544 567777665543
No 244
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00041 Score=62.48 Aligned_cols=102 Identities=25% Similarity=0.193 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhh--------CC----------CChhHHHHHHHHHHHhCCCChHHHHHHHHH
Q 005499 581 AEMLHTEGVMHEGCGQTHEALRAYINALLI--------EP----------SYVPCKVLVGSLFSKLGPKALPVARSLLSD 642 (693)
Q Consensus 581 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p----------~~~~~~~~la~~~~~~g~~~l~~A~~~~~~ 642 (693)
..++...|.-++..|+|.+|...|+.|+.. .| ...+.+.+.+.|++..|++- ++++....
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~y--evleh~se 255 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYY--EVLEHCSE 255 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHH--HHHHHHHH
Confidence 456778889999999999999999988753 23 34788999999999999999 99999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCC
Q 005499 643 ALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASMLEESD 684 (693)
Q Consensus 643 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 684 (693)
++..+|++..+++..|.+....=+..+|...|.++++++|+-
T Consensus 256 iL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 256 ILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred HHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 999999999999999999999999999999999999999864
No 245
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.57 E-value=0.00014 Score=44.97 Aligned_cols=32 Identities=31% Similarity=0.325 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 005499 582 EMLHTEGVMHEGCGQTHEALRAYINALLIEPS 613 (693)
Q Consensus 582 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 613 (693)
.+|+.+|.++..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35556666666666666666666666666654
No 246
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.57 E-value=0.1 Score=51.83 Aligned_cols=373 Identities=12% Similarity=-0.027 Sum_probs=199.2
Q ss_pred HHhhcCCCCCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhc
Q 005499 295 LEEIMPGVFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLAAKICSEDCHLAAEGIQYARTALSNAQ 374 (693)
Q Consensus 295 ~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~ 374 (693)
+..-++.+|.+...|+.+..-+-.+|.+++-.+.++++... .|--..++.+.-.-.+...++. .....+-+++...-
T Consensus 31 LRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p--fp~~~~aw~ly~s~ELA~~df~-svE~lf~rCL~k~l 107 (660)
T COG5107 31 LRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP--FPIMEHAWRLYMSGELARKDFR-SVESLFGRCLKKSL 107 (660)
T ss_pred HHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC--CccccHHHHHHhcchhhhhhHH-HHHHHHHHHHhhhc
Confidence 34456788999999999999999999999999999999984 3766666554433233334444 55556666666322
Q ss_pred CCCcchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChHHHHHH--------------HhCCHHH
Q 005499 375 GKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNADLFFDL--------------EQRNLST 440 (693)
Q Consensus 375 ~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l--------------~~~~~~~ 440 (693)
....|...- -|.+.-+.... .++....-+|-+..-...-.+|.....|... ++.+.+.
T Consensus 108 ------~ldLW~lYl-~YIRr~n~~~t-Gq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~ 179 (660)
T COG5107 108 ------NLDLWMLYL-EYIRRVNNLIT-GQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDK 179 (660)
T ss_pred ------cHhHHHHHH-HHHHhhCcccc-cchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHH
Confidence 133333322 23332222111 1222222455555444555677666655544 5667778
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHH---------H----HcCChHHHHHHHHHHHhhcCCC-----Cc----------
Q 005499 441 ALRYAKQYIDATGGSVLKGWKLLALVL---------S----AQQRFSEAEVVTDAALDETTKW-----EQ---------- 492 (693)
Q Consensus 441 A~~~~~~al~~~p~~~~~~~~~la~~~---------~----~~g~~~~A~~~~~~al~~~p~~-----~~---------- 492 (693)
-...|.+++...-++....|...-..- - ..--|..|...+++...+...+ .+
T Consensus 180 iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~ 259 (660)
T COG5107 180 IRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAART 259 (660)
T ss_pred HHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccccc
Confidence 888888888754444322232111100 0 1112445555555544321100 00
Q ss_pred -hHHHHHHHHHHHHh-----CCh-hH-HHHHHHHHHHHHHhhhhhcCCccc-----------ccchhhhcccHHHHHHHH
Q 005499 493 -GPILRLKAKLKIAQ-----ALP-MD-AIETYRYLLALVQAQRKSFGPLRC-----------LSQIEDDKVNEFQVWHGL 553 (693)
Q Consensus 493 -~~~~~~l~~~~~~~-----g~~-~~-A~~~~~~~l~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~l 553 (693)
..-|.+........ |+. .+ -.-.+++++...|-.++.|-.... +.......+..+.....+
T Consensus 260 s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~l 339 (660)
T COG5107 260 SDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFL 339 (660)
T ss_pred ccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeH
Confidence 00122222211111 111 11 111234444444444333211100 000111222334456667
Q ss_pred HHHHHhCCChHHHHHHHHHHHhh------------------CCC-CHH-----------HHHHHHHHHHHCCChHHHHHH
Q 005499 554 ANLYSGLSHWKDVAICMGKAREL------------------KAY-SAE-----------MLHTEGVMHEGCGQTHEALRA 603 (693)
Q Consensus 554 a~~~~~~~~~~~A~~~~~~al~~------------------~p~-~~~-----------~~~~lg~~~~~~g~~~~A~~~ 603 (693)
+..|...++-++-..+|++++.. +|. .++ +|..+-..-.+..-.+.|...
T Consensus 340 se~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~ 419 (660)
T COG5107 340 SEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKL 419 (660)
T ss_pred HHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHH
Confidence 77777777766666666655421 010 011 222222223344446778888
Q ss_pred HHHHHhhCCCChhHHHHHHHH-HHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 005499 604 YINALLIEPSYVPCKVLVGSL-FSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASML 680 (693)
Q Consensus 604 ~~~al~~~p~~~~~~~~la~~-~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 680 (693)
|.++-+..--...++..-|.+ +...|++. -|-..|+-.+...|+++..-+..-..+...++-+.|...|++++..
T Consensus 420 F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~--ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r 495 (660)
T COG5107 420 FIKLRKEGIVGHHVYIYCAFIEYYATGDRA--TAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVER 495 (660)
T ss_pred HHHHhccCCCCcceeeeHHHHHHHhcCCcc--hHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH
Confidence 888766442333444444443 45678888 9999999999999998877777777788889999999999987763
No 247
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.56 E-value=0.21 Score=55.04 Aligned_cols=378 Identities=16% Similarity=0.110 Sum_probs=212.0
Q ss_pred HHHHHHHHhhcC-CCC---CcHHHHHHHHHHHH-HCCCcHHHHHHHHHHhhccCCCCCH----HHHHHHHHHHHhcCCcH
Q 005499 289 SILAKQLEEIMP-GVF---LRSDRWNALALCYS-AIGQNDAALNLLRKSLHKHERPNDL----MALLLAAKICSEDCHLA 359 (693)
Q Consensus 289 ~~a~~~~e~~l~-~~~---~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~~~p~~~----~~~~~~a~~~~~~~~~~ 359 (693)
..|+.+++-+++ ..+ .+..+.+.+|..++ ...+++.|...+.+++.....++.. ...++++.++.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 345677776663 222 14556888888888 7788999999999987754333322 23345566666555443
Q ss_pred HHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhh-hcccCChHHHhHHHHHHHHHHHHHHhcC--CCChHHHHHH---
Q 005499 360 AEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRH-AKVSSSDYERSRLQSEALKSLDGASTFE--NNNADLFFDL--- 433 (693)
Q Consensus 360 ~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~-~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l--- 433 (693)
|...+++.++............++..+-..+... +++ ..|++.++...... +.++.+....
T Consensus 118 --a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~-----------~~Al~~L~~~~~~a~~~~d~~~~v~~~l~ 184 (608)
T PF10345_consen 118 --ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDY-----------NAALENLQSIAQLANQRGDPAVFVLASLS 184 (608)
T ss_pred --HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccH-----------HHHHHHHHHHHHHhhhcCCHHHHHHHHHH
Confidence 8888888888665422222233333442333322 577 88898888887554 3444433222
Q ss_pred ------HhCCHHHHHHHHHHHHHhcCCC-------c--HHHHHHHHH--HHHHcCChHHHHHHHHHH---Hhhc---CCC
Q 005499 434 ------EQRNLSTALRYAKQYIDATGGS-------V--LKGWKLLAL--VLSAQQRFSEAEVVTDAA---LDET---TKW 490 (693)
Q Consensus 434 ------~~~~~~~A~~~~~~al~~~p~~-------~--~~~~~~la~--~~~~~g~~~~A~~~~~~a---l~~~---p~~ 490 (693)
..+..+.+++.++++....... . ..+|..+-. +....|++..+...+++. ++.. +.|
T Consensus 185 ~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w 264 (608)
T PF10345_consen 185 EALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSW 264 (608)
T ss_pred HHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccC
Confidence 5566777777777764422111 1 144554444 345567766665554433 2211 101
Q ss_pred Cc---------------------h-------------HHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhh-h-hcCCcc
Q 005499 491 EQ---------------------G-------------PILRLKAKLKIAQALPMDAIETYRYLLALVQAQR-K-SFGPLR 534 (693)
Q Consensus 491 ~~---------------------~-------------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~-~-~~~~~~ 534 (693)
.. . -++..-|......+..+.|.++++++++.-.+.. . ......
T Consensus 265 ~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~ 344 (608)
T PF10345_consen 265 PSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSE 344 (608)
T ss_pred CCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCc
Confidence 00 0 0123334455666777799999999988764443 0 000000
Q ss_pred cccc----hhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC---CC------CHHHHHHHHHHHHHCCChHHHH
Q 005499 535 CLSQ----IEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELK---AY------SAEMLHTEGVMHEGCGQTHEAL 601 (693)
Q Consensus 535 ~~~~----~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~------~~~~~~~lg~~~~~~g~~~~A~ 601 (693)
++.. ..-.......+....+...+-.+++..|....+.+.... |. .+..++..|..+...|+.+.|.
T Consensus 345 sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~ 424 (608)
T PF10345_consen 345 SLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAAL 424 (608)
T ss_pred CHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHH
Confidence 0000 000001123455667778888999999999998877643 22 3677899999999999999999
Q ss_pred HHHH--------HHHhhCCCC---hhHHHHHHHHHHHhCCCChHHHHHHHHHHHh-hCCC---CH----HHHHH-HHHHH
Q 005499 602 RAYI--------NALLIEPSY---VPCKVLVGSLFSKLGPKALPVARSLLSDALR-IEPT---NR----KAWYY-LGLVH 661 (693)
Q Consensus 602 ~~~~--------~al~~~p~~---~~~~~~la~~~~~~g~~~l~~A~~~~~~al~-~~p~---~~----~~~~~-lg~~~ 661 (693)
..|. .+....+.. .-+..++..++...+... .....+...++ +.|. .+ ..|+. +-.++
T Consensus 425 ~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~--~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~ 502 (608)
T PF10345_consen 425 YQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRD--DSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATY 502 (608)
T ss_pred HHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccc--hhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHH
Confidence 9998 333333332 234566777777776655 32212333333 3332 11 22222 22222
Q ss_pred HH--cCChHHHHHHHHHHHhcc
Q 005499 662 KD--DGRIADAADCFQAASMLE 681 (693)
Q Consensus 662 ~~--~g~~~~A~~~~~~al~l~ 681 (693)
.. .-...++...+..+++..
T Consensus 503 ~~~~~~~~ne~k~~l~~~L~~~ 524 (608)
T PF10345_consen 503 NTFEPFSSNEAKRHLQEALKMA 524 (608)
T ss_pred hhCCccccHHHHHHHHHHHHHH
Confidence 22 223457888888877754
No 248
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.55 E-value=0.00021 Score=44.08 Aligned_cols=33 Identities=24% Similarity=0.249 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 005499 582 EMLHTEGVMHEGCGQTHEALRAYINALLIEPSY 614 (693)
Q Consensus 582 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 614 (693)
.+|+.+|.++...|++++|+.+|++++.++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 455666666666666666666666666666653
No 249
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.031 Score=52.71 Aligned_cols=153 Identities=17% Similarity=0.086 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCccccc
Q 005499 458 KGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLS 537 (693)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 537 (693)
+.-...+.-....|++.+|...|..++...| .+..+...++.++...|+.+.|...+...-...+...
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~--~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~---------- 202 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAP--ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKA---------- 202 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCc--ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhH----------
Confidence 3344445556667777777777777777777 6777777777888888877777766655432221110
Q ss_pred chhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC--Ch
Q 005499 538 QIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPS--YV 615 (693)
Q Consensus 538 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~ 615 (693)
.....++..+..-....++..+ +++.+..+|++..+-+.++..+...|+.++|.+.+-..++.+.. +.
T Consensus 203 ------~~~l~a~i~ll~qaa~~~~~~~----l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~ 272 (304)
T COG3118 203 ------AHGLQAQIELLEQAAATPEIQD----LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDG 272 (304)
T ss_pred ------HHHHHHHHHHHHHHhcCCCHHH----HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCc
Confidence 0001122222222233333332 34455668888888888899888899998888888777776543 23
Q ss_pred hHHHHHHHHHHHhCCCC
Q 005499 616 PCKVLVGSLFSKLGPKA 632 (693)
Q Consensus 616 ~~~~~la~~~~~~g~~~ 632 (693)
.+...+-.++.-.|..+
T Consensus 273 ~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 273 EARKTLLELFEAFGPAD 289 (304)
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 34444444444444433
No 250
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.53 E-value=0.025 Score=57.96 Aligned_cols=138 Identities=14% Similarity=0.186 Sum_probs=107.7
Q ss_pred ccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-C-C----
Q 005499 544 VNEFQVWHGLANLYSGLSHWKDVAICMGKARELKA----YSAEMLHTEGVMHEGCGQTHEALRAYINALLIE-P-S---- 613 (693)
Q Consensus 544 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p-~---- 613 (693)
......|...+.+..+.|+++.|...+.++....+ ..+.+.+..+.+....|+..+|+..++..+... . .
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 44578899999999999999999999999887652 256788889999999999999999998888711 0 0
Q ss_pred ---------------------C-------hhHHHHHHHHHHHh------CCCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 005499 614 ---------------------Y-------VPCKVLVGSLFSKL------GPKALPVARSLLSDALRIEPTNRKAWYYLGL 659 (693)
Q Consensus 614 ---------------------~-------~~~~~~la~~~~~~------g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~ 659 (693)
. ..++..+|.-.... +..+ ++...|.++++.+|+...+|+.+|.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSD--EILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHH--HHHHHHHHHHHhChhHHHHHHHHHH
Confidence 1 12444555555555 4444 8999999999999999999999988
Q ss_pred HHHHcCC-----------------hHHHHHHHHHHHhcccC
Q 005499 660 VHKDDGR-----------------IADAADCFQAASMLEES 683 (693)
Q Consensus 660 ~~~~~g~-----------------~~~A~~~~~~al~l~p~ 683 (693)
.+...=. ...|+.+|-+++.+.+.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 301 FNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 8765421 13488999999998877
No 251
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.53 E-value=0.17 Score=53.37 Aligned_cols=182 Identities=12% Similarity=0.003 Sum_probs=129.9
Q ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccH---HHHHHHHH
Q 005499 478 VVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNE---FQVWHGLA 554 (693)
Q Consensus 478 ~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~la 554 (693)
-.|+-++..-| +....+..+.--.|+-+.+++.+.++.+.. +-. .|.- .-.++...
T Consensus 178 G~f~L~lSlLP-----p~~~kll~~vGF~gdR~~GL~~L~~~~~~~-~i~---------------~~la~L~LL~y~~~~ 236 (468)
T PF10300_consen 178 GLFNLVLSLLP-----PKVLKLLSFVGFSGDRELGLRLLWEASKSE-NIR---------------SPLAALVLLWYHLVV 236 (468)
T ss_pred HHHHHHHHhCC-----HHHHHHHhhcCcCCcHHHHHHHHHHHhccC-Ccc---------------hHHHHHHHHHHHHHH
Confidence 34444555556 334445555555688888888888876521 110 0000 11112222
Q ss_pred HHHH----hCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC----ChhHHHHHHHHHH
Q 005499 555 NLYS----GLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPS----YVPCKVLVGSLFS 626 (693)
Q Consensus 555 ~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~ 626 (693)
..+. .....+.|..+++......|+.+-..+..|+++...|+.++|++.|++++..... ..-.++.++.++.
T Consensus 237 ~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~ 316 (468)
T PF10300_consen 237 PSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHM 316 (468)
T ss_pred HHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHH
Confidence 2222 2456788999999999999999999999999999999999999999998854332 2346888999999
Q ss_pred HhCCCChHHHHHHHHHHHhhCCCCHHH-HHHHHHHHHHcCCh-------HHHHHHHHHHHhccc
Q 005499 627 KLGPKALPVARSLLSDALRIEPTNRKA-WYYLGLVHKDDGRI-------ADAADCFQAASMLEE 682 (693)
Q Consensus 627 ~~g~~~l~~A~~~~~~al~~~p~~~~~-~~~lg~~~~~~g~~-------~~A~~~~~~al~l~p 682 (693)
-+.+++ +|..++.+..+.+.-+... .+..|.++...|+. ++|.++|+++-.+..
T Consensus 317 ~~~~w~--~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 317 FQHDWE--EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHchHH--HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 999999 9999999999876654433 34578899999999 889999988876543
No 252
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.50 E-value=0.13 Score=51.37 Aligned_cols=145 Identities=16% Similarity=0.142 Sum_probs=76.8
Q ss_pred HHHHHHHHhHhhCChHHHHHHHHHHHHHHHHhhhcCCCChhh-----hhhHHHHHHHHHhh-------------------
Q 005499 124 AIYLKAKSLQKLGRLTEAANECKSVLDAVERIFQQGIPDAQV-----DNRLQETVSRAVEL------------------- 179 (693)
Q Consensus 124 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~a~~~------------------- 179 (693)
.+...|.++.+++++.+|.+.|.++.+..+.- |.... .+-+...+...+..
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~-----~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~ 82 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESS-----PFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLP 82 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcc-----hHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHH
Confidence 35677999999999999999999887654321 11110 00111111111111
Q ss_pred --hHHHHhhcCCchHHHHHHHHHhcccCCCChhHH-HHHHHHHHHHhhhcccccCCCCCcCCCCCcccCCChhHHHHHHH
Q 005499 180 --LPELWKQVGCDHDALAAYRRAVLSQWNLDNECC-ARIQKRFAVFLLHSGVEAGPPSLGSQVEGSYAPKNNLEEAILLL 256 (693)
Q Consensus 180 --l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~-~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 256 (693)
.+.+..+.+++.+|++.+..--+......+... ..+..-+..+++.. ..+.+.+..|.+.|+...+
T Consensus 83 LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~-----------i~a~sLIe~g~f~EgR~iL 151 (549)
T PF07079_consen 83 LFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDE-----------IEAHSLIETGRFSEGRAIL 151 (549)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHH-----------HHHHHHHhcCCcchHHHHH
Confidence 112456677777777666544332000001000 00111122221110 1123566778888888888
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHHHHHh
Q 005499 257 LILMKKYHLGKIKWDPAVMEHLTYALSL 284 (693)
Q Consensus 257 ~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 284 (693)
..+..........++...|+.+...+++
T Consensus 152 n~i~~~llkrE~~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 152 NRIIERLLKRECEWNSDMYDRAVLMLSR 179 (549)
T ss_pred HHHHHHHhhhhhcccHHHHHHHHHHHhH
Confidence 7776665555556889998887666654
No 253
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.47 E-value=0.25 Score=53.84 Aligned_cols=252 Identities=15% Similarity=0.034 Sum_probs=150.7
Q ss_pred cHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCC-------HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCC
Q 005499 305 RSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPND-------LMALLLAAKICSEDCHLAAEGIQYARTALSNAQGKD 377 (693)
Q Consensus 305 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~-------~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~ 377 (693)
++......|+......++.+|..++.++...-..|+. ....-+.+.+....++.. +|+++.+.++...|...
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e-~a~~lar~al~~L~~~~ 492 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPE-EAEDLARLALVQLPEAA 492 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHhccccc
Confidence 4556666788888888888888888887764323322 233344556666677766 88888888888877666
Q ss_pred cchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChHHHHHHHhCCHHHHHHHHHHHHHhcCCCc-
Q 005499 378 EHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNADLFFDLEQRNLSTALRYAKQYIDATGGSV- 456 (693)
Q Consensus 378 ~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~A~~~~~~al~~~p~~~- 456 (693)
......++..+|.+..-.|++ ++|..+..++.+...... ....
T Consensus 493 ~~~r~~~~sv~~~a~~~~G~~-----------~~Al~~~~~a~~~a~~~~-------------------------~~~l~ 536 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRGEL-----------TQALALMQQAEQMARQHD-------------------------VYHLA 536 (894)
T ss_pred chhhhhhhhhhhHHHHHhchH-----------HHHHHHHHHHHHHHHHcc-------------------------cHHHH
Confidence 555677777788888888888 777777776654321110 0011
Q ss_pred HHHHHHHHHHHHHcCC--hHHHHHHHHHHH----hhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhc
Q 005499 457 LKGWKLLALVLSAQQR--FSEAEVVTDAAL----DETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSF 530 (693)
Q Consensus 457 ~~~~~~la~~~~~~g~--~~~A~~~~~~al----~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 530 (693)
..+....+.++..+|+ +.+....+...- ...| .........+.++...-+++.+..-....++..-...
T Consensus 537 ~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~--~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~--- 611 (894)
T COG2909 537 LWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKP--RHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYT--- 611 (894)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcc--cchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcc---
Confidence 0333445667777773 233333333222 2223 2333444444554444456666666666665542221
Q ss_pred CCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCC-H------HHHHHHHHHHHHCCChHHHHHH
Q 005499 531 GPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYS-A------EMLHTEGVMHEGCGQTHEALRA 603 (693)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~------~~~~~lg~~~~~~g~~~~A~~~ 603 (693)
.......-..+.++.+.+..|++++|...+.+........ + .+..........+|+.++|..+
T Consensus 612 ----------~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~ 681 (894)
T COG2909 612 ----------PQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEW 681 (894)
T ss_pred ----------cchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHH
Confidence 0001112333589999999999999999998877653222 1 1222233445678999999888
Q ss_pred HHHHH
Q 005499 604 YINAL 608 (693)
Q Consensus 604 ~~~al 608 (693)
..+..
T Consensus 682 l~~s~ 686 (894)
T COG2909 682 LLKSG 686 (894)
T ss_pred HHhcc
Confidence 87743
No 254
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.038 Score=52.12 Aligned_cols=163 Identities=17% Similarity=0.062 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHH
Q 005499 308 RWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLAAKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRM 387 (693)
Q Consensus 308 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 387 (693)
.-+..+......|++.+|...|..++. ..|++..+.+.++.++...++.. .|...+ ...|..... ..+..
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~--~~~~~~~~~~~la~~~l~~g~~e-~A~~iL----~~lP~~~~~---~~~~~ 205 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQ--AAPENSEAKLLLAECLLAAGDVE-AAQAIL----AALPLQAQD---KAAHG 205 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHHcCChH-HHHHHH----HhCcccchh---hHHHH
Confidence 445566667777888888888888877 45777777777777777777665 444433 333322111 11110
Q ss_pred HHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChHHHHHHHhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 005499 388 LGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNADLFFDLEQRNLSTALRYAKQYIDATGGSVLKGWKLLALVL 467 (693)
Q Consensus 388 lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 467 (693)
. ...++.+.++-...+ ...+++.+..+|++. .+-+.+|..+
T Consensus 206 ----------l-----------~a~i~ll~qaa~~~~-----------------~~~l~~~~aadPdd~-~aa~~lA~~~ 246 (304)
T COG3118 206 ----------L-----------QAQIELLEQAAATPE-----------------IQDLQRRLAADPDDV-EAALALADQL 246 (304)
T ss_pred ----------H-----------HHHHHHHHHHhcCCC-----------------HHHHHHHHHhCCCCH-HHHHHHHHHH
Confidence 1 233445555443322 123455666789998 9999999999
Q ss_pred HHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHH
Q 005499 468 SAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYL 519 (693)
Q Consensus 468 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 519 (693)
...|+.++|.+.+-..+..+..+.+..+...+..++...|.-+.+...+++-
T Consensus 247 ~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRk 298 (304)
T COG3118 247 HLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRK 298 (304)
T ss_pred HHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 9999999999999999998877778888888888888888666555555543
No 255
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.47 E-value=0.018 Score=57.22 Aligned_cols=174 Identities=14% Similarity=-0.008 Sum_probs=122.0
Q ss_pred chHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHh---CCChHHHHH
Q 005499 492 QGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSG---LSHWKDVAI 568 (693)
Q Consensus 492 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~~~~~~A~~ 568 (693)
.+.+...+-..|....+|+.-++..+.+-.. |... .+....+....|.++.+ .|+.++|+.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~-p~~~---------------~~~~~~i~~~yafALnRrn~~gdre~Al~ 203 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEAL-PTCD---------------VANQHNIKFQYAFALNRRNKPGDREKALQ 203 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc-Cccc---------------hhcchHHHHHHHHHHhhcccCCCHHHHHH
Confidence 3455666677788888888877777665544 1110 13346677788888888 999999999
Q ss_pred HHHH-HHhhCCCCHHHHHHHHHHHHHC---------CChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHH
Q 005499 569 CMGK-ARELKAYSAEMLHTEGVMHEGC---------GQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARS 638 (693)
Q Consensus 569 ~~~~-al~~~p~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~ 638 (693)
.+.. .....+.+++++..+|.+|... ...++|+.+|.++..++|+. ..-.|++.++.-.|... +...
T Consensus 204 il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~--~~~~ 280 (374)
T PF13281_consen 204 ILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDF--ETSE 280 (374)
T ss_pred HHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcc--cchH
Confidence 9999 5556678899999999988532 24789999999999999755 44556667777777654 3332
Q ss_pred HHHHHH--------hh----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCC
Q 005499 639 LLSDAL--------RI----EPTNRKAWYYLGLVHKDDGRIADAADCFQAASMLEESD 684 (693)
Q Consensus 639 ~~~~al--------~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 684 (693)
-+++.. +. .-.+....-.++.+..-.|++++|++++++++.+.|..
T Consensus 281 el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 281 ELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred HHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 222222 11 11223344468888899999999999999999987654
No 256
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.45 E-value=0.012 Score=60.14 Aligned_cols=99 Identities=10% Similarity=-0.064 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHh-cCCHHHHHHHHHhhcCCCCCcH--HHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHHH
Q 005499 273 AVMEHLTYALSL-CSQTSILAKQLEEIMPGVFLRS--DRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLAA 349 (693)
Q Consensus 273 ~~~~~l~~~~~~-~g~~~~a~~~~e~~l~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a 349 (693)
..+..++..|++ .|+...|..++..++-+.++.. .....+|..+.+.|...+|--++..++... |.-....+.++
T Consensus 213 w~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA--~~~t~n~y~l~ 290 (886)
T KOG4507|consen 213 WVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDA--DFFTSNYYTLG 290 (886)
T ss_pred HHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCC--ccccccceeHH
Confidence 455666666665 7999999999999987765532 357889999999999999999998887732 44333455666
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHhhc
Q 005499 350 KICSEDCHLAAEGIQYARTALSNAQ 374 (693)
Q Consensus 350 ~~~~~~~~~~~~A~~~~~~al~~~~ 374 (693)
.++...+.+. .....|..+.+..|
T Consensus 291 ~i~aml~~~N-~S~~~ydha~k~~p 314 (886)
T KOG4507|consen 291 NIYAMLGEYN-HSVLCYDHALQARP 314 (886)
T ss_pred HHHHHHhhhh-hhhhhhhhhhccCc
Confidence 6666665555 55555555555544
No 257
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.43 E-value=0.00014 Score=72.46 Aligned_cols=132 Identities=20% Similarity=0.156 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q 005499 547 FQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFS 626 (693)
Q Consensus 547 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 626 (693)
+...-.-+.-.+..+.++.|+..|.++++++|+++..+-+.+..+.+.+++..|+..+.++++.+|....+++..|....
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM 83 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence 34455667788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCC
Q 005499 627 KLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASMLEESDP 685 (693)
Q Consensus 627 ~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 685 (693)
.++++. +|...|+....+.|+++.+...+-.+-... ...-|++++-..++++
T Consensus 84 ~l~~~~--~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~v-----s~~~fe~ai~~~~~d~ 135 (476)
T KOG0376|consen 84 ALGEFK--KALLDLEKVKKLAPNDPDATRKIDECNKIV-----SEEKFEKAILTPEGDK 135 (476)
T ss_pred hHHHHH--HHHHHHHHhhhcCcCcHHHHHHHHHHHHHH-----HHHhhhhcccCCccCC
Confidence 999999 999999999999999998877665554322 2344566655444333
No 258
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.43 E-value=0.00019 Score=71.43 Aligned_cols=100 Identities=18% Similarity=0.082 Sum_probs=92.7
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 005499 586 TEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDG 665 (693)
Q Consensus 586 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 665 (693)
..+.-...-+.++.|+..|.++++++|+.+..+.+.+..+.+.+++. .|+..+.++++.+|....+++..|.+....+
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~--~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFG--GALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhh--hHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 34555677789999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcccCCCCC
Q 005499 666 RIADAADCFQAASMLEESDPIE 687 (693)
Q Consensus 666 ~~~~A~~~~~~al~l~p~~~~~ 687 (693)
++.+|...|++...+.|++|.+
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~ 108 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDA 108 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHH
Confidence 9999999999999999998753
No 259
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.41 E-value=0.29 Score=53.37 Aligned_cols=301 Identities=12% Similarity=-0.033 Sum_probs=174.6
Q ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHH
Q 005499 339 PNDLMALLLAAKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDG 418 (693)
Q Consensus 339 p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 418 (693)
|.-...+...+..+..++... +|+...-.+-+ ....+......|.-....++. ..+..
T Consensus 344 ~~~~~lH~~Aa~w~~~~g~~~-eAI~hAlaA~d------~~~aa~lle~~~~~L~~~~~l---------------sll~~ 401 (894)
T COG2909 344 ARLKELHRAAAEWFAEHGLPS-EAIDHALAAGD------PEMAADLLEQLEWQLFNGSEL---------------SLLLA 401 (894)
T ss_pred CchhHHHHHHHHHHHhCCChH-HHHHHHHhCCC------HHHHHHHHHhhhhhhhcccch---------------HHHHH
Confidence 334566666666677777666 88876644322 112233333334444444444 12222
Q ss_pred HHhcCC--------CCh--HHHHHHHhCCHHHHHHHHHHHHHhcCC--Cc------HHHHHHHHHHHHHcCChHHHHHHH
Q 005499 419 ASTFEN--------NNA--DLFFDLEQRNLSTALRYAKQYIDATGG--SV------LKGWKLLALVLSAQQRFSEAEVVT 480 (693)
Q Consensus 419 al~~~p--------~~~--~~~~~l~~~~~~~A~~~~~~al~~~p~--~~------~~~~~~la~~~~~~g~~~~A~~~~ 480 (693)
.++.-| .-. .+|......++.+|.....++...-|. .. ....-..|.+....|++++|++..
T Consensus 402 ~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~la 481 (894)
T COG2909 402 WLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLA 481 (894)
T ss_pred HHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 222222 211 122233778888888888877665433 11 023445677888999999999999
Q ss_pred HHHHhhcCCC---CchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHH
Q 005499 481 DAALDETTKW---EQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLY 557 (693)
Q Consensus 481 ~~al~~~p~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 557 (693)
+.++..-|.. ....+....+.+..-.|++++|..+.+.+.+...... .......+....+.++
T Consensus 482 r~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~--------------~~~l~~~~~~~~s~il 547 (894)
T COG2909 482 RLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHD--------------VYHLALWSLLQQSEIL 547 (894)
T ss_pred HHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc--------------cHHHHHHHHHHHHHHH
Confidence 9999877621 2244677889999999999999999999988864431 1123344455567888
Q ss_pred HhCCChH--HHHHHHHHH----HhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh----CCCCh--h-HHHHHHHH
Q 005499 558 SGLSHWK--DVAICMGKA----RELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLI----EPSYV--P-CKVLVGSL 624 (693)
Q Consensus 558 ~~~~~~~--~A~~~~~~a----l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~--~-~~~~la~~ 624 (693)
..+|+.. +....+... +...|.+.......+.++...-+++.+..-....++. .|... . +...|+.+
T Consensus 548 ~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l 627 (894)
T COG2909 548 EAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAEL 627 (894)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHH
Confidence 8888433 333333222 2223443333333333333333355555555555443 23222 2 23478999
Q ss_pred HHHhCCCChHHHHHHHHHHHhhCCCC-HH----H--HHHHHHHHHHcCChHHHHHHHHHH
Q 005499 625 FSKLGPKALPVARSLLSDALRIEPTN-RK----A--WYYLGLVHKDDGRIADAADCFQAA 677 (693)
Q Consensus 625 ~~~~g~~~l~~A~~~~~~al~~~p~~-~~----~--~~~lg~~~~~~g~~~~A~~~~~~a 677 (693)
+...|+.+ +|...+.+........ +. + ..-.......+|+.++|.....+.
T Consensus 628 ~~~~Gdl~--~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 628 EFLRGDLD--KALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHhcCCHH--HHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 99999988 9999998887753322 11 1 111233345678988888887763
No 260
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.35 E-value=0.092 Score=56.82 Aligned_cols=83 Identities=14% Similarity=0.070 Sum_probs=46.7
Q ss_pred ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC----CChHHHHHHHHHHHhhCCCChhHHHHHHHHHHH-hCCCChHHH
Q 005499 562 HWKDVAICMGKARELKAYSAEMLHTEGVMHEGC----GQTHEALRAYINALLIEPSYVPCKVLVGSLFSK-LGPKALPVA 636 (693)
Q Consensus 562 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~l~~A 636 (693)
+...+...+.++.. ..++.+...+|.+|..- .+++.|...|..+.... ....+++|.++.. .|-..+..|
T Consensus 454 ~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a 528 (552)
T KOG1550|consen 454 TLERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLA 528 (552)
T ss_pred chhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHH
Confidence 44455555555442 34555666666665543 34667777777766654 6667777776654 222212367
Q ss_pred HHHHHHHHhhCCC
Q 005499 637 RSLLSDALRIEPT 649 (693)
Q Consensus 637 ~~~~~~al~~~p~ 649 (693)
.+++.++.+.+..
T Consensus 529 ~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 529 KRYYDQASEEDSR 541 (552)
T ss_pred HHHHHHHHhcCch
Confidence 7777766655443
No 261
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.33 E-value=0.00041 Score=42.77 Aligned_cols=33 Identities=27% Similarity=0.476 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcccCC
Q 005499 652 KAWYYLGLVHKDDGRIADAADCFQAASMLEESD 684 (693)
Q Consensus 652 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 684 (693)
.+|+.+|.+|..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 578899999999999999999999999998853
No 262
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.27 E-value=0.0048 Score=53.80 Aligned_cols=117 Identities=15% Similarity=0.072 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCh-HHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q 005499 548 QVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQT-HEALRAYINALLIEPSYVPCKVLVGSLFS 626 (693)
Q Consensus 548 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~ 626 (693)
......|......++...++..+++++.+.....-.-..- ..| ......++.. ...+...++..+.
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~-------~~W~~~~r~~l~~~------~~~~~~~l~~~~~ 73 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD-------EEWVEPERERLREL------YLDALERLAEALL 73 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT-------STTHHHHHHHHHHH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc-------cHHHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 4444456666777888888888888887754331100000 111 1111222222 1346666777778
Q ss_pred HhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 005499 627 KLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASM 679 (693)
Q Consensus 627 ~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 679 (693)
..|+++ +|+..+++++..+|.+..+|..+..+|...|+..+|+..|++...
T Consensus 74 ~~~~~~--~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 74 EAGDYE--EALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HTT-HH--HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hccCHH--HHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 888877 888888888888888888888888888888888888888877654
No 263
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.24 E-value=0.35 Score=50.42 Aligned_cols=126 Identities=15% Similarity=0.059 Sum_probs=88.1
Q ss_pred ccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCChhHHHHHH
Q 005499 544 VNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIE-PSYVPCKVLVG 622 (693)
Q Consensus 544 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la 622 (693)
+.+...|......-...|+++...-.|++++--.......|...+......|+.+-|...+..+.++. |..+.....-+
T Consensus 294 ~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 294 QAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 34466677777777777888888888877776666667777777777777777777777777766654 44455555555
Q ss_pred HHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHH
Q 005499 623 SLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAA 671 (693)
Q Consensus 623 ~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 671 (693)
..-...|++. .|...+++..+..|+...+-.....+...+|+.+.+.
T Consensus 374 ~f~e~~~n~~--~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 374 RFEESNGNFD--DAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHHHhhccHH--HHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 5556667777 7888887777766777666666666667777777666
No 264
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.23 E-value=0.18 Score=54.69 Aligned_cols=294 Identities=17% Similarity=0.099 Sum_probs=168.9
Q ss_pred cHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhc
Q 005499 322 NDAALNLLRKSLHKHERPNDLMALLLAAKICSED----CHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAK 397 (693)
Q Consensus 322 ~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~ 397 (693)
...|...++.+.+ -++..+...++.+++.- ....+.|+.+++.+..........-.+.+...+|.+|.....
T Consensus 228 ~~~a~~~~~~~a~----~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAK----LGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHh----hcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCC
Confidence 4567777777776 45666666666555432 223337888888776621000001115567788888887543
Q ss_pred ccCChHHHhHHHHHHHHHHHHHHhcCCCChHHHHHH----Hh--CCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc-
Q 005499 398 VSSSDYERSRLQSEALKSLDGASTFENNNADLFFDL----EQ--RNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQ- 470 (693)
Q Consensus 398 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l----~~--~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~- 470 (693)
.... ....|+.+|.++-.....+....... .. .++..|..+|..+... .+. .+.+.++.+|..-
T Consensus 304 ~~~~------d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~-~A~~~la~~y~~G~ 374 (552)
T KOG1550|consen 304 VEKI------DYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHI-LAIYRLALCYELGL 374 (552)
T ss_pred Cccc------cHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CCh-HHHHHHHHHHHhCC
Confidence 2000 11778999998887765544443333 22 4567888888887643 445 7777787777643
Q ss_pred ---CChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHh-CChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccH
Q 005499 471 ---QRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQ-ALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNE 546 (693)
Q Consensus 471 ---g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (693)
.+...|..++.++-+..+ +.+.+.++.++..- ++++.+.-.+....+..-..
T Consensus 375 gv~r~~~~A~~~~k~aA~~g~----~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~-------------------- 430 (552)
T KOG1550|consen 375 GVERNLELAFAYYKKAAEKGN----PSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEV-------------------- 430 (552)
T ss_pred CcCCCHHHHHHHHHHHHHccC----hhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhH--------------------
Confidence 467778888888777653 13333333333222 56665555444443332111
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q 005499 547 FQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFS 626 (693)
Q Consensus 547 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 626 (693)
....+..+...+. ....++. ...+.+.+...+.++.. ..+..+...+|.+|.
T Consensus 431 ---~q~~a~~l~~~~~-----------~~~~~~~------------~~~~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~ 482 (552)
T KOG1550|consen 431 ---AQSNAAYLLDQSE-----------EDLFSRG------------VISTLERAFSLYSRAAA--QGNADAILKLGDYYY 482 (552)
T ss_pred ---HhhHHHHHHHhcc-----------ccccccc------------cccchhHHHHHHHHHHh--ccCHHHHhhhcceee
Confidence 0001111111110 1111110 01234455555655543 456778888888887
Q ss_pred Hh---C-CCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-C--ChHHHHHHHHHHHhcccCCC
Q 005499 627 KL---G-PKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDD-G--RIADAADCFQAASMLEESDP 685 (693)
Q Consensus 627 ~~---g-~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g--~~~~A~~~~~~al~l~p~~~ 685 (693)
.- + +++ .|...|.++.... ..+.+++|.++..- | ....|..+|.++.+.+...-
T Consensus 483 ~g~g~~~d~~--~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~~~ 543 (552)
T KOG1550|consen 483 YGLGTGRDPE--KAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSRAY 543 (552)
T ss_pred ecCCCCCChH--HHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCchhh
Confidence 65 2 355 8888888887766 88899999998742 2 16889999999988765543
No 265
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.18 E-value=0.03 Score=49.34 Aligned_cols=117 Identities=9% Similarity=-0.060 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhhCCCCHH---HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHHhCCCChHHHHH
Q 005499 565 DVAICMGKARELKAYSAE---MLHTEGVMHEGCGQTHEALRAYINALLIEPSY---VPCKVLVGSLFSKLGPKALPVARS 638 (693)
Q Consensus 565 ~A~~~~~~al~~~p~~~~---~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~l~~A~~ 638 (693)
+.....++....+|.+.. +-..++..+...|++++|+..++.++....+. .-+-.+|+.+..++|.++ +|+.
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D--~AL~ 147 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKAD--AALK 147 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHH--HHHH
Confidence 333444444444544433 34556777778888888888888877543222 235567888888888888 8877
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCC
Q 005499 639 LLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASMLEESD 684 (693)
Q Consensus 639 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 684 (693)
.+...-.. .-.+..-...|.++...|+.++|+..|+++++..++.
T Consensus 148 ~L~t~~~~-~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 148 TLDTIKEE-SWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHhccccc-cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 77543211 0112334457888888888888888888888876544
No 266
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0074 Score=57.31 Aligned_cols=101 Identities=17% Similarity=0.151 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHH
Q 005499 546 EFQVWHGLANLYSGLSHWKDVAICMGKARELKAYS----AEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLV 621 (693)
Q Consensus 546 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 621 (693)
.+..+..-|+-|++.++|..|..+|.+.++..-.+ +..|.+.+.+....|+|..|+....+++.++|.+..+++.-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 46777788999999999999999999999875444 45688999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHhhCC
Q 005499 622 GSLFSKLGPKALPVARSLLSDALRIEP 648 (693)
Q Consensus 622 a~~~~~~g~~~l~~A~~~~~~al~~~p 648 (693)
+.|++++.++. +|..+++..+.++.
T Consensus 160 Akc~~eLe~~~--~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 160 AKCLLELERFA--EAVNWCEEGLQIDD 184 (390)
T ss_pred hHHHHHHHHHH--HHHHHHhhhhhhhH
Confidence 99999999988 88888877766543
No 267
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.14 E-value=0.0092 Score=51.99 Aligned_cols=63 Identities=22% Similarity=0.179 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q 005499 581 AEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALR 645 (693)
Q Consensus 581 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~ 645 (693)
..+...++..+...|++++|+..+++++..+|.+..++..+-.+|...|+.. +|+..|++..+
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~--~A~~~Y~~~~~ 124 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRA--EALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHH--HHHHHHHHHHH
Confidence 3567778888999999999999999999999999999999999999999998 99999988754
No 268
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.25 Score=45.77 Aligned_cols=225 Identities=12% Similarity=0.070 Sum_probs=159.8
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHH------HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChH-HHHHHHHH
Q 005499 410 SEALKSLDGASTFENNNADLFFDL------EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFS-EAEVVTDA 482 (693)
Q Consensus 410 ~~A~~~~~~al~~~p~~~~~~~~l------~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~-~A~~~~~~ 482 (693)
..|+..-..++.++|.+..+|... ...+..+-++++..+++.+|.+. .+|+..-.+....|++. .-++....
T Consensus 60 ~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNY-QvWHHRr~ive~l~d~s~rELef~~~ 138 (318)
T KOG0530|consen 60 PRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNY-QVWHHRRVIVELLGDPSFRELEFTKL 138 (318)
T ss_pred HHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccch-hHHHHHHHHHHHhcCcccchHHHHHH
Confidence 788999999999999999888776 56678899999999999999999 99999999999999888 88999999
Q ss_pred HHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHh-CC
Q 005499 483 ALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSG-LS 561 (693)
Q Consensus 483 al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~ 561 (693)
++..+. .+..+|...-.+....+.++.-+.+..++++.+-.+. .+|...--+... .|
T Consensus 139 ~l~~Da--KNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NN--------------------SAWN~Ryfvi~~~~~ 196 (318)
T KOG0530|consen 139 MLDDDA--KNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNN--------------------SAWNQRYFVITNTKG 196 (318)
T ss_pred HHhccc--cchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcc--------------------chhheeeEEEEeccC
Confidence 999888 7889999999999999999999999999999874332 333322111111 11
Q ss_pred -----ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-CC--ChHHHHHHHHHHH-hhCCCChhHHHHHHHHHHHh----
Q 005499 562 -----HWKDVAICMGKARELKAYSAEMLHTEGVMHEG-CG--QTHEALRAYINAL-LIEPSYVPCKVLVGSLFSKL---- 628 (693)
Q Consensus 562 -----~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g--~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~---- 628 (693)
..+.-+.+..+.+...|++..+|..|.-++.. .| ....-........ ...-.++..+-.+..+|...
T Consensus 197 ~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~~e~~l~~ 276 (318)
T KOG0530|consen 197 VISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLYAEDALAY 276 (318)
T ss_pred CccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHHHHHHhhc
Confidence 13345566777888899999999888877775 44 1334444444444 33334455555666666221
Q ss_pred --CCCC-hHHHHHHHHHHH-hhCCCCHHHHHHH
Q 005499 629 --GPKA-LPVARSLLSDAL-RIEPTNRKAWYYL 657 (693)
Q Consensus 629 --g~~~-l~~A~~~~~~al-~~~p~~~~~~~~l 657 (693)
+.-+ ..+|...++..- +.+|-....|...
T Consensus 277 ~~~~~~~a~~a~~ly~~La~~~DpiR~nyW~~~ 309 (318)
T KOG0530|consen 277 KSSAEELARKAVKLYEDLAIKVDPIRKNYWRHK 309 (318)
T ss_pred cccchHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 1111 114666666654 6677655555443
No 269
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.74 Score=50.87 Aligned_cols=97 Identities=14% Similarity=0.035 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHH--HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhc
Q 005499 410 SEALKSLDGASTFENNNADLFFDL--EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDET 487 (693)
Q Consensus 410 ~~A~~~~~~al~~~p~~~~~~~~l--~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 487 (693)
++|...|++- .-+..+...+ ..++.+.|.++.++. +.+ ..|..+|.+..+.|...+|++.|-++
T Consensus 1065 EEAF~ifkkf----~~n~~A~~VLie~i~~ldRA~efAe~~-----n~p-~vWsqlakAQL~~~~v~dAieSyika---- 1130 (1666)
T KOG0985|consen 1065 EEAFAIFKKF----DMNVSAIQVLIENIGSLDRAYEFAERC-----NEP-AVWSQLAKAQLQGGLVKDAIESYIKA---- 1130 (1666)
T ss_pred HHHHHHHHHh----cccHHHHHHHHHHhhhHHHHHHHHHhh-----CCh-HHHHHHHHHHHhcCchHHHHHHHHhc----
Confidence 7777777652 2233344444 677778877776654 345 88999999999999999999988663
Q ss_pred CCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 005499 488 TKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALV 523 (693)
Q Consensus 488 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 523 (693)
+++..+.....+..+.|.|++-+.++.-+.+..
T Consensus 1131 ---dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~ 1163 (1666)
T KOG0985|consen 1131 ---DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV 1163 (1666)
T ss_pred ---CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 566778888889999999999888887766553
No 270
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.01 E-value=0.00033 Score=66.48 Aligned_cols=124 Identities=17% Similarity=0.070 Sum_probs=102.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCC
Q 005499 553 LANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKA 632 (693)
Q Consensus 553 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 632 (693)
-+.-.+..|.+++|++.|..++.++|.....+...+.++..+++...|+..+..++.++|+....+-..+....-+|+++
T Consensus 120 ~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e 199 (377)
T KOG1308|consen 120 QASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWE 199 (377)
T ss_pred HHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchH
Confidence 44556678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 005499 633 LPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASM 679 (693)
Q Consensus 633 l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 679 (693)
+|.+.++.+.+++-+ ..+--.+-.+.-..+..++-...++++.+
T Consensus 200 --~aa~dl~~a~kld~d-E~~~a~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 200 --EAAHDLALACKLDYD-EANSATLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred --HHHHHHHHHHhcccc-HHHHHHHHHhccchhhhhhchhHHHHHHH
Confidence 999999999987654 33334455566566666665556665554
No 271
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.98 E-value=0.82 Score=55.45 Aligned_cols=135 Identities=19% Similarity=0.164 Sum_probs=102.7
Q ss_pred ccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CC---------
Q 005499 544 VNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIE-PS--------- 613 (693)
Q Consensus 544 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~--------- 613 (693)
....++|...|++....|+++.|...+-.|.+.. -+.+....|..+..+|+...|+..+++.+..+ |+
T Consensus 1667 ~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p 1744 (2382)
T KOG0890|consen 1667 SRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTP 1744 (2382)
T ss_pred chhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccc
Confidence 4457999999999999999999999998888766 57788999999999999999999999999653 22
Q ss_pred -C------hhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH------------HcCChHH---HH
Q 005499 614 -Y------VPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHK------------DDGRIAD---AA 671 (693)
Q Consensus 614 -~------~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~------------~~g~~~~---A~ 671 (693)
. ..+...++.-....|+.+...-++.|..+.+..|...+.++.+|.-|. ..|++.. ++
T Consensus 1745 ~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~ 1824 (2382)
T KOG0890|consen 1745 QSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAI 1824 (2382)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHH
Confidence 1 123444555556678877667889999999999977777777774332 3455555 55
Q ss_pred HHHHHHHhc
Q 005499 672 DCFQAASML 680 (693)
Q Consensus 672 ~~~~~al~l 680 (693)
-.|.+++.-
T Consensus 1825 ~~~~~sl~y 1833 (2382)
T KOG0890|consen 1825 YFFGRALYY 1833 (2382)
T ss_pred HHHHHHHHh
Confidence 555666654
No 272
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.98 E-value=0.077 Score=52.95 Aligned_cols=169 Identities=11% Similarity=-0.070 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhh----cCCCCchHHHHHHHHHHHH---hCChhHHHHHHHHHHHHHHhhhhhc
Q 005499 458 KGWKLLALVLSAQQRFSEAEVVTDAALDE----TTKWEQGPILRLKAKLKIA---QALPMDAIETYRYLLALVQAQRKSF 530 (693)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~l~~~~~~~~~~ 530 (693)
+....+-.+|....+|+.-+.+.+.+-.. .+ ....+.+..|..+.+ .|+.++|+..+..++....
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~--~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~------ 213 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVA--NQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDE------ 213 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchh--cchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccC------
Confidence 44455555677777777777777665444 22 344556666777776 6777777777777544321
Q ss_pred CCcccccchhhhcccHHHHHHHHHHHHHh---------CCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHH
Q 005499 531 GPLRCLSQIEDDKVNEFQVWHGLANLYSG---------LSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEAL 601 (693)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~---------~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 601 (693)
+.+++++..+|.+|.. ....++|+.+|.++..++|+. ..-.+++.++...|...+..
T Consensus 214 -------------~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~ 279 (374)
T PF13281_consen 214 -------------NPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETS 279 (374)
T ss_pred -------------CCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccch
Confidence 2335666666666542 224789999999999999644 34456666777777643333
Q ss_pred HHHHHHH-hh-----------CCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCC
Q 005499 602 RAYINAL-LI-----------EPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTN 650 (693)
Q Consensus 602 ~~~~~al-~~-----------~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~ 650 (693)
.-.++.. .+ .-.+.+.+-.++.+..-.|+++ +|.+.++++++..|..
T Consensus 280 ~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~--ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 280 EELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYE--KAIQAAEKAFKLKPPA 338 (374)
T ss_pred HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHH--HHHHHHHHHhhcCCcc
Confidence 2222221 11 1123445566777778889988 9999999999987653
No 273
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.96 E-value=0.00085 Score=41.88 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcccC
Q 005499 653 AWYYLGLVHKDDGRIADAADCFQAASMLEES 683 (693)
Q Consensus 653 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 683 (693)
+|.+||.+|...|++++|+++|++++.+.++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4778999999999999999999997765543
No 274
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.91 E-value=0.055 Score=47.72 Aligned_cols=119 Identities=15% Similarity=0.042 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhhcCCCCchH---HHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHH
Q 005499 475 EAEVVTDAALDETTKWEQGP---ILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWH 551 (693)
Q Consensus 475 ~A~~~~~~al~~~p~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (693)
+.....++....++ .... ....++..+...+++++|+..++.++....+. .....+-.
T Consensus 70 ~~~~~~ekf~~~n~--~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De-----------------~lk~l~~l 130 (207)
T COG2976 70 KSIAAAEKFVQANG--KTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDE-----------------NLKALAAL 130 (207)
T ss_pred hhHHHHHHHHhhcc--ccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhH-----------------HHHHHHHH
Confidence 33444445455554 2222 24466777888888888888888877553111 22355667
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 005499 552 GLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPS 613 (693)
Q Consensus 552 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 613 (693)
+++.+...+|.+++|+..+...... .-.+......|.++...|+-++|+..|++++...++
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEE-SWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 8888888888888888877653321 112334566788888888888888888888887644
No 275
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.91 E-value=0.0018 Score=39.86 Aligned_cols=30 Identities=30% Similarity=0.372 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 005499 583 MLHTEGVMHEGCGQTHEALRAYINALLIEP 612 (693)
Q Consensus 583 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 612 (693)
+|+.+|.++...|++++|+..|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455556666666666666666666655555
No 276
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.90 E-value=0.0011 Score=63.09 Aligned_cols=90 Identities=21% Similarity=0.233 Sum_probs=73.1
Q ss_pred HHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHH
Q 005499 591 HEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADA 670 (693)
Q Consensus 591 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 670 (693)
....|.+++|++.|..++.++|.....+...+.++.++++.. .|++.+..+++++|+....+-..|.....+|++++|
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~--~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPN--AAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCc--hhhhhhhhhhccCcccccccchhhHHHHHhhchHHH
Confidence 345677888888888888888888888888888888888888 888888888888888877777788888888888888
Q ss_pred HHHHHHHHhccc
Q 005499 671 ADCFQAASMLEE 682 (693)
Q Consensus 671 ~~~~~~al~l~p 682 (693)
...+..+.+++-
T Consensus 202 a~dl~~a~kld~ 213 (377)
T KOG1308|consen 202 AHDLALACKLDY 213 (377)
T ss_pred HHHHHHHHhccc
Confidence 888888877653
No 277
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.89 E-value=0.25 Score=48.92 Aligned_cols=82 Identities=15% Similarity=0.053 Sum_probs=39.4
Q ss_pred HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc----CChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHH----
Q 005499 434 EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQ----QRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIA---- 505 (693)
Q Consensus 434 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~---- 505 (693)
..+++..+...+..+-. -.+. .+...++.+|... .+..+|..+|..+.+ . ..+...+.+|.++..
T Consensus 53 ~~~~~~~a~~~~~~a~~--~~~~-~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--~--g~~~a~~~lg~~~~~G~gv 125 (292)
T COG0790 53 YPPDYAKALKSYEKAAE--LGDA-AALALLGQMYGAGKGVSRDKTKAADWYRCAAA--D--GLAEALFNLGLMYANGRGV 125 (292)
T ss_pred ccccHHHHHHHHHHhhh--cCCh-HHHHHHHHHHHhccCccccHHHHHHHHHHHhh--c--ccHHHHHhHHHHHhcCCCc
Confidence 34556666666655543 1222 4455555555433 234555555553222 1 233455555555554
Q ss_pred hCChhHHHHHHHHHHHH
Q 005499 506 QALPMDAIETYRYLLAL 522 (693)
Q Consensus 506 ~g~~~~A~~~~~~~l~~ 522 (693)
..++.+|..+|+++...
T Consensus 126 ~~d~~~A~~~~~~Aa~~ 142 (292)
T COG0790 126 PLDLVKALKYYEKAAKL 142 (292)
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 23555555555555544
No 278
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.82 E-value=0.096 Score=52.34 Aligned_cols=159 Identities=8% Similarity=-0.006 Sum_probs=115.9
Q ss_pred HHHHHHHhcCCCChHHHHHH--------Hh---------CCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHH
Q 005499 414 KSLDGASTFENNNADLFFDL--------EQ---------RNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEA 476 (693)
Q Consensus 414 ~~~~~al~~~p~~~~~~~~l--------~~---------~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A 476 (693)
.-|++.++.+|.|.++|..+ .. .-.+.-+.++++|++.+|++. ..+..+-.+.....+.++.
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~-~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSE-RLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhCCHHHH
Confidence 45778888999999999988 11 114567789999999999988 8888888888888899999
Q ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHH---hCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHH
Q 005499 477 EVVTDAALDETTKWEQGPILRLKAKLKIA---QALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGL 553 (693)
Q Consensus 477 ~~~~~~al~~~p~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 553 (693)
.+.+++++..+| .+..+|......... .-.++.....|.+++..-....... ................++..+
T Consensus 85 ~~~we~~l~~~~--~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~--~~~~~~~~~~e~~~l~v~~r~ 160 (321)
T PF08424_consen 85 AKKWEELLFKNP--GSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGR--MTSHPDLPELEEFMLYVFLRL 160 (321)
T ss_pred HHHHHHHHHHCC--CChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccc--cccccchhhHHHHHHHHHHHH
Confidence 999999999999 788888666555444 2357888899999888765443111 000000001112235667777
Q ss_pred HHHHHhCCChHHHHHHHHHHHhhC
Q 005499 554 ANLYSGLSHWKDVAICMGKARELK 577 (693)
Q Consensus 554 a~~~~~~~~~~~A~~~~~~al~~~ 577 (693)
.......|..+.|+..++-.++.+
T Consensus 161 ~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 161 CRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHCCchHHHHHHHHHHHHHH
Confidence 888888999999999999888875
No 279
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.0073 Score=57.36 Aligned_cols=98 Identities=19% Similarity=0.112 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC----hhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 005499 582 EMLHTEGVMHEGCGQTHEALRAYINALLIEPSY----VPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYL 657 (693)
Q Consensus 582 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~l 657 (693)
.-+-.-|.-|++..+|..|+.+|.+.++..-.+ ...|.+.+.+...+|++. .|+....+++.++|++..+++.=
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyR--s~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYR--SALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHH--HHHHHHHHHHhcCcchhhhhhhh
Confidence 345567889999999999999999999875443 457899999999999999 99999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcc
Q 005499 658 GLVHKDDGRIADAADCFQAASMLE 681 (693)
Q Consensus 658 g~~~~~~g~~~~A~~~~~~al~l~ 681 (693)
+.++..+.++.+|..+.+..++++
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhh
Confidence 999999999998888887776654
No 280
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.66 E-value=0.0026 Score=38.73 Aligned_cols=33 Identities=21% Similarity=0.151 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcccCC
Q 005499 652 KAWYYLGLVHKDDGRIADAADCFQAASMLEESD 684 (693)
Q Consensus 652 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 684 (693)
++++.+|.++...|++++|+..|+++++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 367778888888888888888888888877764
No 281
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.60 E-value=0.16 Score=43.69 Aligned_cols=120 Identities=17% Similarity=0.124 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q 005499 547 FQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFS 626 (693)
Q Consensus 547 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 626 (693)
...+..+..+-...++.+++...+...--+.|..+..-..-|.++...|+|.+|+..++.+....|..+.+.-.++.|+.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 45667777788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHH
Q 005499 627 KLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAA 671 (693)
Q Consensus 627 ~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 671 (693)
.+|+.+ =..+-.++++..+ ++.+......+. ...+...|.
T Consensus 90 ~~~D~~---Wr~~A~evle~~~-d~~a~~Lv~~Ll-~~~~~~~a~ 129 (160)
T PF09613_consen 90 ALGDPS---WRRYADEVLESGA-DPDARALVRALL-ARADLEPAH 129 (160)
T ss_pred HcCChH---HHHHHHHHHhcCC-ChHHHHHHHHHH-Hhccccchh
Confidence 999875 3333445555444 455544443333 333333343
No 282
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.59 E-value=0.22 Score=50.34 Aligned_cols=100 Identities=11% Similarity=-0.021 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCC-CHH-HHHHHHHHHHHCCChHHHHHHHHHHHhhCC-----CChhHHH
Q 005499 547 FQVWHGLANLYSGLSHWKDVAICMGKARELKAY-SAE-MLHTEGVMHEGCGQTHEALRAYINALLIEP-----SYVPCKV 619 (693)
Q Consensus 547 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~ 619 (693)
..+.+.....+.+.|-+..|.++.+-.+.++|. +|- +.+.+-....+.++++--+..++....... .-+...+
T Consensus 103 flal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~ 182 (360)
T PF04910_consen 103 FLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAF 182 (360)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHH
Confidence 566677788889999999999999999999998 664 455666667788888877777776554211 1234667
Q ss_pred HHHHHHHHhCCC---------------ChHHHHHHHHHHHhhCC
Q 005499 620 LVGSLFSKLGPK---------------ALPVARSLLSDALRIEP 648 (693)
Q Consensus 620 ~la~~~~~~g~~---------------~l~~A~~~~~~al~~~p 648 (693)
..+.++...++. + .|...+.+|+...|
T Consensus 183 S~aLA~~~l~~~~~~~~~~~~~~~~~~~--~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 183 SIALAYFRLEKEESSQSSAQSGRSENSE--SADEALQKAILRFP 224 (360)
T ss_pred HHHHHHHHhcCccccccccccccccchh--HHHHHHHHHHHHhH
Confidence 788888888887 6 88888888876544
No 283
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.59 E-value=0.16 Score=51.40 Aligned_cols=168 Identities=13% Similarity=-0.009 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh---
Q 005499 410 SEALKSLDGASTFENNNADLFFDLEQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDE--- 486 (693)
Q Consensus 410 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 486 (693)
.++...|..++... |+.. +...+..+|-+. +++..++.++..+|+.+.|.+.+++++=.
T Consensus 11 ~~~q~~F~~~v~~~--Dp~~---------------l~~ll~~~PyHi-dtLlqls~v~~~~gd~~~A~~lleRALf~~e~ 72 (360)
T PF04910_consen 11 QEAQEQFYAAVQSH--DPNA---------------LINLLQKNPYHI-DTLLQLSEVYRQQGDHAQANDLLERALFAFER 72 (360)
T ss_pred HHHHHHHHHHHHcc--CHHH---------------HHHHHHHCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 67777777777442 2221 234567799998 99999999999999999999999988631
Q ss_pred --cCCC-------------------Cch---HHHHHHHHHHHHhCChhHHHHHHHHHHHHHHh-hhhhcCCcccccchhh
Q 005499 487 --TTKW-------------------EQG---PILRLKAKLKIAQALPMDAIETYRYLLALVQA-QRKSFGPLRCLSQIED 541 (693)
Q Consensus 487 --~p~~-------------------~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~ 541 (693)
.|.+ .|- .+++.....+.+.|-+..|.++.+-++.++|. +|
T Consensus 73 ~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP-------------- 138 (360)
T PF04910_consen 73 AFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDP-------------- 138 (360)
T ss_pred HHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc--------------
Confidence 1100 121 23556677888999999999999999999987 43
Q ss_pred hcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHHCCCh---------------HHHH
Q 005499 542 DKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKA-----YSAEMLHTEGVMHEGCGQT---------------HEAL 601 (693)
Q Consensus 542 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g~~---------------~~A~ 601 (693)
..+.+.+-....+.++++--+..++....... .-|..-+..+.++...++- +.|.
T Consensus 139 -----~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~ 213 (360)
T PF04910_consen 139 -----LGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESAD 213 (360)
T ss_pred -----chhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHH
Confidence 34555555666778888877777776554211 1235667778888888887 8999
Q ss_pred HHHHHHHhhCCCC
Q 005499 602 RAYINALLIEPSY 614 (693)
Q Consensus 602 ~~~~~al~~~p~~ 614 (693)
..+.+|+...|.-
T Consensus 214 ~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 214 EALQKAILRFPWV 226 (360)
T ss_pred HHHHHHHHHhHHH
Confidence 9999999987754
No 284
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.53 E-value=0.05 Score=42.30 Aligned_cols=79 Identities=14% Similarity=0.044 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 005499 441 ALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLL 520 (693)
Q Consensus 441 A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 520 (693)
.+..+++.++.+|++. .+.+.+|..+...|++++|++.+-.++..++.|.+..+...+..++...|.-+.-...|++-+
T Consensus 7 ~~~al~~~~a~~P~D~-~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 7 DIAALEAALAANPDDL-DARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp HHHHHHHHHHHSTT-H-HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 3566788888999998 999999999999999999999999999999977677788888888888887665555555433
No 285
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.45 E-value=0.17 Score=50.63 Aligned_cols=146 Identities=11% Similarity=0.029 Sum_probs=110.8
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCC------------hHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChh
Q 005499 443 RYAKQYIDATGGSVLKGWKLLALVLSAQQR------------FSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPM 510 (693)
Q Consensus 443 ~~~~~al~~~p~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~ 510 (693)
..+++.++.+|.+. .+|..+....-..-. .+.-+.++++|++.+| ++..++..+-.......+.+
T Consensus 6 ~el~~~v~~~P~di-~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np--~~~~L~l~~l~~~~~~~~~~ 82 (321)
T PF08424_consen 6 AELNRRVRENPHDI-EAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP--DSERLLLGYLEEGEKVWDSE 82 (321)
T ss_pred HHHHHHHHhCcccH-HHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhCCHH
Confidence 45778888999998 999998876554432 3566889999999999 89999988888888999999
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHH---hCCChHHHHHHHHHHHhhCC----C----
Q 005499 511 DAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYS---GLSHWKDVAICMGKARELKA----Y---- 579 (693)
Q Consensus 511 ~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~---~~~~~~~A~~~~~~al~~~p----~---- 579 (693)
+..+.+++++..+|.. ...|...-.... ..-.+......|.+++..-. .
T Consensus 83 ~l~~~we~~l~~~~~~--------------------~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~ 142 (321)
T PF08424_consen 83 KLAKKWEELLFKNPGS--------------------PELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTS 142 (321)
T ss_pred HHHHHHHHHHHHCCCC--------------------hHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhcccccc
Confidence 9999999999987544 566655544333 23456777777777765311 0
Q ss_pred ----------CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q 005499 580 ----------SAEMLHTEGVMHEGCGQTHEALRAYINALLIE 611 (693)
Q Consensus 580 ----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 611 (693)
-..++..+.......|..+.|+..++..++++
T Consensus 143 ~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 143 HPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 12356677778889999999999999999875
No 286
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.41 E-value=1.1 Score=44.24 Aligned_cols=161 Identities=19% Similarity=0.076 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHH---------HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCChHHH
Q 005499 410 SEALKSLDGASTFENNNADLFFDL---------EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSA----QQRFSEA 476 (693)
Q Consensus 410 ~~A~~~~~~al~~~p~~~~~~~~l---------~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~----~g~~~~A 476 (693)
..+...+.++-... +......+ ...+..+|..+|+.+. ...++ .+.+.+|.+|.. ..+..+|
T Consensus 58 ~~a~~~~~~a~~~~--~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~-~a~~~lg~~~~~G~gv~~d~~~A 132 (292)
T COG0790 58 AKALKSYEKAAELG--DAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLA-EALFNLGLMYANGRGVPLDLVKA 132 (292)
T ss_pred HHHHHHHHHhhhcC--ChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccH-HHHHhHHHHHhcCCCcccCHHHH
Confidence 88898888887532 22222222 5667899999999554 45566 889999999987 4589999
Q ss_pred HHHHHHHHhhcCCCCc-hHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHH
Q 005499 477 EVVTDAALDETTKWEQ-GPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLAN 555 (693)
Q Consensus 477 ~~~~~~al~~~p~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 555 (693)
..+|+++....- .. ......++.++..-. ...+
T Consensus 133 ~~~~~~Aa~~g~--~~a~~~~~~l~~~~~~g~-~~~~------------------------------------------- 166 (292)
T COG0790 133 LKYYEKAAKLGN--VEAALAMYRLGLAYLSGL-QALA------------------------------------------- 166 (292)
T ss_pred HHHHHHHHHcCC--hhHHHHHHHHHHHHHcCh-hhhc-------------------------------------------
Confidence 999999988754 22 222444444444322 0000
Q ss_pred HHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhC
Q 005499 556 LYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEG----CGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLG 629 (693)
Q Consensus 556 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 629 (693)
..-+...|...|.++-... ++.+.+.+|.+|.. ..++.+|..+|.++-+... ..+.+.++ ++...|
T Consensus 167 ---~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 167 ---VAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred ---ccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 0001146666676666544 67788888877755 3478899999999888765 77788888 666665
No 287
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.30 E-value=0.014 Score=54.78 Aligned_cols=74 Identities=19% Similarity=0.131 Sum_probs=66.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHH
Q 005499 551 HGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSL 624 (693)
Q Consensus 551 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 624 (693)
...+.-..+.|+.++|..+|+.++.+.|.++.++...|......++.-+|-.+|-+++.++|.+.+++.+.+..
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 34444556889999999999999999999999999999999999999999999999999999999988876654
No 288
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.25 E-value=0.0071 Score=36.74 Aligned_cols=31 Identities=16% Similarity=0.080 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q 005499 583 MLHTEGVMHEGCGQTHEALRAYINALLIEPS 613 (693)
Q Consensus 583 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 613 (693)
+++.+|.++...|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3444555555555555555555555554443
No 289
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.24 E-value=0.53 Score=40.69 Aligned_cols=144 Identities=9% Similarity=-0.024 Sum_probs=88.3
Q ss_pred HHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccH
Q 005499 467 LSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNE 546 (693)
Q Consensus 467 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (693)
+.+.+..++|+..|...-+..-..-..-+....+.+....|+...|+..|.++-...|... +..
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~----------------~~r 131 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQ----------------IGR 131 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcc----------------hhh
Confidence 3455667777777776554433101123445667777777888888888877665432111 111
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHH
Q 005499 547 FQVWHGLANLYSGLSHWKDVAICMGKAR-ELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLF 625 (693)
Q Consensus 547 ~~~~~~la~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 625 (693)
-.+...-+.++...|.|++-....+..- ..+|--..+...||..-.+.|++..|.++|..... +...+....+.+.+.
T Consensus 132 d~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~m 210 (221)
T COG4649 132 DLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIM 210 (221)
T ss_pred HHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHH
Confidence 2345556677778888877666555432 23455566777788888888888888888888766 444455555555554
Q ss_pred HH
Q 005499 626 SK 627 (693)
Q Consensus 626 ~~ 627 (693)
..
T Consensus 211 ld 212 (221)
T COG4649 211 LD 212 (221)
T ss_pred HH
Confidence 43
No 290
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.18 E-value=1.4 Score=43.05 Aligned_cols=129 Identities=17% Similarity=0.062 Sum_probs=72.6
Q ss_pred HhHHHHHHHHHhhhh-cccCChHHHhHHHHHHHHHHHHHHhc----C------CCChHHHHHH------------HhCCH
Q 005499 382 GVGLRMLGLCLGRHA-KVSSSDYERSRLQSEALKSLDGASTF----E------NNNADLFFDL------------EQRNL 438 (693)
Q Consensus 382 ~~~~~~lg~~~~~~~-~~~~~~~~~~~~~~~A~~~~~~al~~----~------p~~~~~~~~l------------~~~~~ 438 (693)
+..++..|......+ ++ ++|...++++... . |+........ .....
T Consensus 35 a~~~yn~G~~l~~~~~~~-----------~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~ 103 (278)
T PF08631_consen 35 ARVCYNIGKSLLSKKDKY-----------EEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESV 103 (278)
T ss_pred HHHHHHHHHHHHHcCCCh-----------HHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 455666666666666 66 6666666666544 1 1111111111 22345
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCC-CCchHHHHHHHHHHHHhCChhHHHHHHH
Q 005499 439 STALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTK-WEQGPILRLKAKLKIAQALPMDAIETYR 517 (693)
Q Consensus 439 ~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 517 (693)
++|...++.+-...|+.+ ..+...-.++...++.+++.+.+.+++...+- ..+.........-+. ......|...+.
T Consensus 104 ~ka~~~l~~l~~e~~~~~-~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~-~~~~~~a~~~ld 181 (278)
T PF08631_consen 104 EKALNALRLLESEYGNKP-EVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLA-EKSPELAAFCLD 181 (278)
T ss_pred HHHHHHHHHHHHhCCCCc-HHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHH-hhCcHHHHHHHH
Confidence 567777777767778877 77666666666688899999999988876441 011222112121222 234556777777
Q ss_pred HHHHHH
Q 005499 518 YLLALV 523 (693)
Q Consensus 518 ~~l~~~ 523 (693)
..+...
T Consensus 182 ~~l~~r 187 (278)
T PF08631_consen 182 YLLLNR 187 (278)
T ss_pred HHHHHH
Confidence 766543
No 291
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.13 E-value=0.0099 Score=37.02 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=13.4
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHH
Q 005499 584 LHTEGVMHEGCGQTHEALRAYINAL 608 (693)
Q Consensus 584 ~~~lg~~~~~~g~~~~A~~~~~~al 608 (693)
+..+|.+|...|++++|+.+|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555543
No 292
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.10 E-value=0.068 Score=53.99 Aligned_cols=92 Identities=13% Similarity=0.138 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 005499 564 KDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDA 643 (693)
Q Consensus 564 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~a 643 (693)
..-...|+.++...+.++..|........+.+.+.+-...|.+++..+|++++.|..-|.-.+..+.. ++.|+.++.++
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~n-i~saRalflrg 166 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLN-IESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccc-hHHHHHHHHHH
Confidence 34456778888888888888888887777777788888888888888898888888888777776663 23888888888
Q ss_pred HhhCCCCHHHHHH
Q 005499 644 LRIEPTNRKAWYY 656 (693)
Q Consensus 644 l~~~p~~~~~~~~ 656 (693)
++.+|++|..|..
T Consensus 167 LR~npdsp~Lw~e 179 (568)
T KOG2396|consen 167 LRFNPDSPKLWKE 179 (568)
T ss_pred hhcCCCChHHHHH
Confidence 8888888877754
No 293
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.08 E-value=0.12 Score=40.25 Aligned_cols=67 Identities=15% Similarity=0.138 Sum_probs=47.5
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC--hhHHHHHHHHHHHhCCCC
Q 005499 566 VAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSY--VPCKVLVGSLFSKLGPKA 632 (693)
Q Consensus 566 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~ 632 (693)
.+..+++.+..+|++..+.+.++..+...|++++|++.+-.++..+|++ ..+...+-.++..+|..+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 3556778888899999999999999999999999999999999888765 344455555555555544
No 294
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.93 E-value=0.18 Score=46.65 Aligned_cols=104 Identities=20% Similarity=0.180 Sum_probs=68.1
Q ss_pred CChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHH-------HHHHHHHhhC--
Q 005499 507 ALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVA-------ICMGKARELK-- 577 (693)
Q Consensus 507 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~-------~~~~~al~~~-- 577 (693)
..+++|++.|.-++-...-.. ......+.+++.+|++|...|+.+... ..|.++....
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~-------------~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~ 157 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKK-------------EKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDF 157 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhC-------------CCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 467788888887776542221 111234788999999999999965544 4444444332
Q ss_pred CC----CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCCh-hHHHHHHH
Q 005499 578 AY----SAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYV-PCKVLVGS 623 (693)
Q Consensus 578 p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~ 623 (693)
|. ...+.+.+|.+..+.|++++|+.+|.+++....... ..+..+|.
T Consensus 158 ~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 158 PIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred CCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 21 246788899999999999999999999987543322 34444443
No 295
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.87 E-value=1.1 Score=47.46 Aligned_cols=171 Identities=11% Similarity=0.023 Sum_probs=99.4
Q ss_pred HhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChHHHHHH---------------HhCCHHHHHHHHH
Q 005499 382 GVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNADLFFDL---------------EQRNLSTALRYAK 446 (693)
Q Consensus 382 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l---------------~~~~~~~A~~~~~ 446 (693)
++.|.+++......-.. +-|...|-+.-.. |.- .....+ --|++++|.+.|-
T Consensus 692 prLWrllAe~Al~Kl~l-----------~tAE~AFVrc~dY-~Gi-k~vkrl~~i~s~~~q~aei~~~~g~feeaek~yl 758 (1189)
T KOG2041|consen 692 PRLWRLLAEYALFKLAL-----------DTAEHAFVRCGDY-AGI-KLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYL 758 (1189)
T ss_pred hHHHHHHHHHHHHHHhh-----------hhHhhhhhhhccc-cch-hHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhh
Confidence 78888888877776666 6777766654321 110 000011 3466777766664
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhh
Q 005499 447 QYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQ 526 (693)
Q Consensus 447 ~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 526 (693)
.+ +..+ .-..++...|+|-...++++..-....+.....++..+|..+..+..+++|.++|.+.-...
T Consensus 759 d~---drrD------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e--- 826 (1189)
T KOG2041|consen 759 DA---DRRD------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTE--- 826 (1189)
T ss_pred cc---chhh------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH---
Confidence 43 2111 12334556667766666655432222110234577888888888888888888877654331
Q ss_pred hhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHH
Q 005499 527 RKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYIN 606 (693)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 606 (693)
+...++....++++-..+ ...-|++...+-.+|..+...|..++|.+.|-+
T Consensus 827 -------------------------~~~ecly~le~f~~LE~l----a~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 827 -------------------------NQIECLYRLELFGELEVL----ARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred -------------------------hHHHHHHHHHhhhhHHHH----HHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 344455555555543332 233567777777788888888888888877754
No 296
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.86 E-value=0.012 Score=35.28 Aligned_cols=32 Identities=25% Similarity=0.339 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcccC
Q 005499 652 KAWYYLGLVHKDDGRIADAADCFQAASMLEES 683 (693)
Q Consensus 652 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 683 (693)
.+++.+|.++...|++++|+.+|++++++.|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 46778888888888888888888888887775
No 297
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.79 E-value=2.1 Score=41.82 Aligned_cols=228 Identities=13% Similarity=-0.027 Sum_probs=126.3
Q ss_pred HhCCHHHHHHHHHHHHHhc-CCCc------HHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhc----CCC-C-------ch
Q 005499 434 EQRNLSTALRYAKQYIDAT-GGSV------LKGWKLLALVLSAQQ-RFSEAEVVTDAALDET----TKW-E-------QG 493 (693)
Q Consensus 434 ~~~~~~~A~~~~~~al~~~-p~~~------~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~----p~~-~-------~~ 493 (693)
..|+++.|..++.++-... ..++ ...++..|......+ +++.|..+++++.+.- +.. . ..
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 3566677777776665443 2222 145677788888888 9999999999988762 100 1 12
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 005499 494 PILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKA 573 (693)
Q Consensus 494 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 573 (693)
.++..++.++...+.++...++ .++++.-.+. .+..+..+...-.++.+.++.+++.+.+.++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka-~~~l~~l~~e----------------~~~~~~~~~L~l~il~~~~~~~~~~~~L~~m 147 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKA-LNALRLLESE----------------YGNKPEVFLLKLEILLKSFDEEEYEEILMRM 147 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHH-HHHHHHHHHh----------------CCCCcHHHHHHHHHHhccCChhHHHHHHHHH
Confidence 3567888888888876543332 2222222111 1333555545555555689999999999999
Q ss_pred HhhCC-CCHHHHHHHHHH-HHHCCChHHHHHHHHHHHhh--CCCChhHHHHHH---HHHHHhCC--CC----hHHHHHHH
Q 005499 574 RELKA-YSAEMLHTEGVM-HEGCGQTHEALRAYINALLI--EPSYVPCKVLVG---SLFSKLGP--KA----LPVARSLL 640 (693)
Q Consensus 574 l~~~p-~~~~~~~~lg~~-~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la---~~~~~~g~--~~----l~~A~~~~ 640 (693)
+...+ .....-..+..+ .........|...+...+.. .|.... +.... .++...+. .. ++....++
T Consensus 148 i~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~ 226 (278)
T PF08631_consen 148 IRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELL 226 (278)
T ss_pred HHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHH
Confidence 87644 122221112222 12223446677777777653 333221 33222 22222221 11 11222223
Q ss_pred HHHHh--hCCCCHH-------HHHHHHHHHHHcCChHHHHHHHHHHHh
Q 005499 641 SDALR--IEPTNRK-------AWYYLGLVHKDDGRIADAADCFQAASM 679 (693)
Q Consensus 641 ~~al~--~~p~~~~-------~~~~lg~~~~~~g~~~~A~~~~~~al~ 679 (693)
..+.+ ..|-.+. ...+.|...+..++|++|..+|+-++.
T Consensus 227 ~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 227 SIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 32211 1232322 345678899999999999999998763
No 298
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.78 E-value=0.17 Score=40.32 Aligned_cols=67 Identities=18% Similarity=0.223 Sum_probs=35.3
Q ss_pred HHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChHHHHHH--H---hCCHHHHHHHHHHHHH
Q 005499 384 GLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNADLFFDL--E---QRNLSTALRYAKQYID 450 (693)
Q Consensus 384 ~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l--~---~~~~~~A~~~~~~al~ 450 (693)
.+...|.++..++.....+.-+..+.-.++++|.++..+.|..+..++.+ . ...|+++....++++.
T Consensus 35 lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 35 LHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred HHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 33444444444444333334444445667778888877777665555555 2 2344555555555443
No 299
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.77 E-value=0.45 Score=40.24 Aligned_cols=85 Identities=15% Similarity=0.014 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHH
Q 005499 548 QVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSK 627 (693)
Q Consensus 548 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 627 (693)
..+..+...-...++.+++...+...--+.|+.+.+-..-|.++...|+|.+|+..++......+..+.+.-.++.|+.-
T Consensus 11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a 90 (153)
T TIGR02561 11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA 90 (153)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence 44455555556699999999999999899999999999999999999999999999999998888888888888999999
Q ss_pred hCCCC
Q 005499 628 LGPKA 632 (693)
Q Consensus 628 ~g~~~ 632 (693)
+|+.+
T Consensus 91 l~Dp~ 95 (153)
T TIGR02561 91 KGDAE 95 (153)
T ss_pred cCChH
Confidence 99865
No 300
>PRK10941 hypothetical protein; Provisional
Probab=95.77 E-value=0.11 Score=49.86 Aligned_cols=73 Identities=8% Similarity=-0.007 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHH
Q 005499 548 QVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVL 620 (693)
Q Consensus 548 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 620 (693)
....++-.+|.+.++++.|+.+.+..+.+.|+++.-+...|.+|.+.|.+..|...++..++..|+++.+-.-
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 4455566777788888888888888888888888888888888888888888888888888888877665443
No 301
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.70 E-value=7.8 Score=47.70 Aligned_cols=107 Identities=17% Similarity=0.148 Sum_probs=83.3
Q ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhC-CC--------
Q 005499 579 YSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIE-PT-------- 649 (693)
Q Consensus 579 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~-p~-------- 649 (693)
.....|...|++....|+++.|..+.-+|.+.. -+.+....|..+...|+.. .|+..+++.++.+ |+
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~--~Al~~Lq~~l~~~~~~~~~~~~~~ 1743 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDEL--NALSVLQEILSKNFPDLHTPYTDT 1743 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHH--HHHHHHHHHHHhhcccccCCcccc
Confidence 346789999999999999999999999988876 5678999999999999999 9999999999653 22
Q ss_pred --C------HHHHHHHHHHHHHcCChH--HHHHHHHHHHhcccCCCCCcc
Q 005499 650 --N------RKAWYYLGLVHKDDGRIA--DAADCFQAASMLEESDPIESF 689 (693)
Q Consensus 650 --~------~~~~~~lg~~~~~~g~~~--~A~~~~~~al~l~p~~~~~~~ 689 (693)
. ..+...++.-....|+++ +-+..|+.+.++.|....-.|
T Consensus 1744 p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy 1793 (2382)
T KOG0890|consen 1744 PQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHY 1793 (2382)
T ss_pred chhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCcee
Confidence 1 123444555556666643 456789999999997655544
No 302
>PRK10941 hypothetical protein; Provisional
Probab=95.69 E-value=0.13 Score=49.39 Aligned_cols=76 Identities=22% Similarity=0.071 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 005499 583 MLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLV 660 (693)
Q Consensus 583 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~ 660 (693)
...++-.++...++++.|+.+.+..+.+.|+++.-+.-.|.+|.++|.+. .|...++..++..|+++.+-.....+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~--~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEH--VALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcH--HHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 45677788999999999999999999999999999999999999999999 99999999999999998876554443
No 303
>PF13041 PPR_2: PPR repeat family
Probab=95.68 E-value=0.033 Score=37.78 Aligned_cols=42 Identities=12% Similarity=0.054 Sum_probs=36.3
Q ss_pred HHhhhHHHHhhcCCchHHHHHHHHHhcccCCCChhHHHHHHH
Q 005499 176 AVELLPELWKQVGCDHDALAAYRRAVLSQWNLDNECCARIQK 217 (693)
Q Consensus 176 a~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 217 (693)
.+..+...|++.|++++|...|++|.+.+..||..++..+..
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~ 46 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILIN 46 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 445566789999999999999999999999999999987644
No 304
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.45 E-value=0.61 Score=49.22 Aligned_cols=67 Identities=16% Similarity=0.089 Sum_probs=40.6
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHH----------HHHHHHHHHhCChhHHHHHHH
Q 005499 448 YIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPIL----------RLKAKLKIAQALPMDAIETYR 517 (693)
Q Consensus 448 al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------~~l~~~~~~~g~~~~A~~~~~ 517 (693)
.++.+|. + ..|..+|......-.++-|...|-+.-. .+ -.... ...+.+-.--|++++|.+.|-
T Consensus 685 fiEdnPH-p-rLWrllAe~Al~Kl~l~tAE~AFVrc~d-Y~---Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yl 758 (1189)
T KOG2041|consen 685 FIEDNPH-P-RLWRLLAEYALFKLALDTAEHAFVRCGD-YA---GIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYL 758 (1189)
T ss_pred HHhcCCc-h-HHHHHHHHHHHHHHhhhhHhhhhhhhcc-cc---chhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhh
Confidence 3444664 4 8899999888877777777777765322 11 11111 233444455578888888775
Q ss_pred HHH
Q 005499 518 YLL 520 (693)
Q Consensus 518 ~~l 520 (693)
.+-
T Consensus 759 d~d 761 (1189)
T KOG2041|consen 759 DAD 761 (1189)
T ss_pred ccc
Confidence 543
No 305
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.45 E-value=0.23 Score=42.79 Aligned_cols=85 Identities=18% Similarity=0.039 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 005499 582 EMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVH 661 (693)
Q Consensus 582 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~ 661 (693)
..+..+..+-...++.+++...+...--+.|+.+..-..-|.++...|++. +|+..|+.+.+..|..+.+--.++.++
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~--dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWD--DALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHH--HHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 356666777788889999999999999999999999999999999999999 999999999999999998888899999
Q ss_pred HHcCChH
Q 005499 662 KDDGRIA 668 (693)
Q Consensus 662 ~~~g~~~ 668 (693)
..+|+.+
T Consensus 89 ~~~~D~~ 95 (160)
T PF09613_consen 89 YALGDPS 95 (160)
T ss_pred HHcCChH
Confidence 9888843
No 306
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.35 E-value=0.061 Score=36.67 Aligned_cols=43 Identities=23% Similarity=0.189 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHHHHH
Q 005499 307 DRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLAAKI 351 (693)
Q Consensus 307 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~ 351 (693)
+..|.+|..+++.|+|++|...++.+++ .+|++..+..+...+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHHHH
Confidence 3578899999999999999999999999 569998877665543
No 307
>PF13041 PPR_2: PPR repeat family
Probab=95.31 E-value=0.063 Score=36.39 Aligned_cols=45 Identities=20% Similarity=0.322 Sum_probs=34.8
Q ss_pred cHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHHH
Q 005499 305 RSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLAA 349 (693)
Q Consensus 305 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a 349 (693)
+..+|..+...+.+.|++++|.++|+++.+.+..|+......++.
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~ 46 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILIN 46 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 456788888888888889999999988888877777665555443
No 308
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.29 E-value=0.056 Score=50.82 Aligned_cols=70 Identities=19% Similarity=0.171 Sum_probs=61.2
Q ss_pred HHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 005499 588 GVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGL 659 (693)
Q Consensus 588 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~ 659 (693)
+.-..+.|+.++|...|+.++.++|++++++..+|.......+.- +|-.+|-+++.+.|.+.+++.+.+.
T Consensus 123 A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv--~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 123 AGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIV--EADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhH--hhhhhhheeeeeCCCchHHHhhhhc
Confidence 333467899999999999999999999999999999888887777 9999999999999999988776543
No 309
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.23 E-value=0.13 Score=35.17 Aligned_cols=32 Identities=25% Similarity=0.128 Sum_probs=13.8
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhCCCChh
Q 005499 585 HTEGVMHEGCGQTHEALRAYINALLIEPSYVP 616 (693)
Q Consensus 585 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 616 (693)
+.++..+.+.|+|++|..+.+.+++++|++..
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 34444444444444444444444444444443
No 310
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.09 E-value=0.033 Score=33.16 Aligned_cols=30 Identities=33% Similarity=0.354 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 005499 583 MLHTEGVMHEGCGQTHEALRAYINALLIEP 612 (693)
Q Consensus 583 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 612 (693)
+++.+|.++...|++++|+.+|+++++.+|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344555555555555555555555555444
No 311
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.07 E-value=0.23 Score=39.58 Aligned_cols=46 Identities=11% Similarity=0.052 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 005499 635 VARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASML 680 (693)
Q Consensus 635 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 680 (693)
.+++.+.++..+.|..+..++.+|.-+-..--|+++..--++++..
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 5778888888888988888888887766666677777777777764
No 312
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.41 Score=49.70 Aligned_cols=125 Identities=17% Similarity=0.073 Sum_probs=89.8
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHH--HHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHH
Q 005499 561 SHWKDVAICMGKARELKAYSAEMLHT--EGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARS 638 (693)
Q Consensus 561 ~~~~~A~~~~~~al~~~p~~~~~~~~--lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~ 638 (693)
+...-++..+...+.++|.++..+.. +...+...+....+......++..+|++..+..+|+......|... ..+..
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~-~~~~~ 123 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQF-LALAD 123 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHH-HHHHH
Confidence 33344566666666677777765333 4666777788878888888888888888888888888887766654 13444
Q ss_pred HHHHHHhhCCCCHHHHHHH------HHHHHHcCChHHHHHHHHHHHhcccCCCC
Q 005499 639 LLSDALRIEPTNRKAWYYL------GLVHKDDGRIADAADCFQAASMLEESDPI 686 (693)
Q Consensus 639 ~~~~al~~~p~~~~~~~~l------g~~~~~~g~~~~A~~~~~~al~l~p~~~~ 686 (693)
..+.+....|.+......+ +.....+|+..++....+++..+.|.+|.
T Consensus 124 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~ 177 (620)
T COG3914 124 ISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPR 177 (620)
T ss_pred HHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhh
Confidence 4444777788877665555 88888888888888888888888888764
No 313
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.83 E-value=0.64 Score=37.33 Aligned_cols=62 Identities=18% Similarity=0.227 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHH-------hhCCCCHHH----HHHHHHHHHHcCChHHHHHHHHHHHhc
Q 005499 617 CKVLVGSLFSKLGPKALPVARSLLSDAL-------RIEPTNRKA----WYYLGLVHKDDGRIADAADCFQAASML 680 (693)
Q Consensus 617 ~~~~la~~~~~~g~~~l~~A~~~~~~al-------~~~p~~~~~----~~~lg~~~~~~g~~~~A~~~~~~al~l 680 (693)
++-.|+..+..+|+++ +++..-.+++ +++.+.... -++.+..+...|+.++|+..|+.+-++
T Consensus 57 chA~Ls~A~~~Lgry~--e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYD--ECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHTT-HH--HHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHH--HHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 3444445555555554 4333333333 334444333 356788888889999999888888763
No 314
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.82 E-value=1.6 Score=40.61 Aligned_cols=95 Identities=14% Similarity=0.062 Sum_probs=54.4
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhCCC------------ChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCC--
Q 005499 585 HTEGVMHEGCGQTHEALRAYINALLIEPS------------YVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTN-- 650 (693)
Q Consensus 585 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~-- 650 (693)
..+|.+++..|+|.+-.+.+++....... -.+.+..-..+|..+.+.. .-..+|++++.+...-
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNK--kLK~lYeqalhiKSAIPH 226 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNK--KLKALYEQALHIKSAIPH 226 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccH--HHHHHHHHHHHhhccCCc
Confidence 35777777777777666665554432111 1123333345566666666 6666777777654332
Q ss_pred HHHH----HHHHHHHHHcCChHHHHHHHHHHHhcc
Q 005499 651 RKAW----YYLGLVHKDDGRIADAADCFQAASMLE 681 (693)
Q Consensus 651 ~~~~----~~lg~~~~~~g~~~~A~~~~~~al~l~ 681 (693)
|.+. -.=|..+.+.|+|++|-..|-.|++-.
T Consensus 227 PlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 227 PLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred hHHHhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence 2222 223556777788888877777776643
No 315
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.81 E-value=0.19 Score=45.12 Aligned_cols=62 Identities=13% Similarity=0.051 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 005499 548 QVWHGLANLYSGLSHWKDVAICMGKARELKAY---SAEMLHTEGVMHEGCGQTHEALRAYINALL 609 (693)
Q Consensus 548 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 609 (693)
.++..+|..|.+.|+.++|++.|.++...... ..+.++.+..+....+++.....+..++-.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45555666666666666666666655443221 123445555555555555555555555443
No 316
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.68 E-value=0.073 Score=34.27 Aligned_cols=37 Identities=24% Similarity=0.296 Sum_probs=26.8
Q ss_pred HHHHHHHHHhHhhCChHHHHHHHHHHHHHHHHhhhcC
Q 005499 123 EAIYLKAKSLQKLGRLTEAANECKSVLDAVERIFQQG 159 (693)
Q Consensus 123 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 159 (693)
.++..+|.+|...|++++|...+++++.+..+.....
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~ 39 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRERLLGPD 39 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhccc
Confidence 5678899999999999999999999999877665433
No 317
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.63 E-value=0.19 Score=46.60 Aligned_cols=29 Identities=17% Similarity=0.261 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 005499 652 KAWYYLGLVHKDDGRIADAADCFQAASML 680 (693)
Q Consensus 652 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l 680 (693)
...+.+|.+..+.|++++|..+|.+++..
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 34555666666666666666666666654
No 318
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.62 E-value=1.9 Score=34.70 Aligned_cols=101 Identities=17% Similarity=0.195 Sum_probs=64.8
Q ss_pred HHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHh-----
Q 005499 501 KLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARE----- 575 (693)
Q Consensus 501 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~----- 575 (693)
.-...-|-|++|...++++++....-|..- .-+..-.+.-++-.|+.++..+|+|++++....+++.
T Consensus 17 e~ql~~g~~~eAa~s~r~AM~~srtiP~eE--------aFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR 88 (144)
T PF12968_consen 17 ERQLQDGAYEEAAASCRKAMEVSRTIPAEE--------AFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR 88 (144)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHHTTS-TTS-----------HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccCChHh--------hcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Confidence 334556788888888888888764433110 0011122356777889999999999998887777764
Q ss_pred --hCCCCHH----HHHHHHHHHHHCCChHHHHHHHHHHHh
Q 005499 576 --LKAYSAE----MLHTEGVMHEGCGQTHEALRAYINALL 609 (693)
Q Consensus 576 --~~p~~~~----~~~~lg~~~~~~g~~~~A~~~~~~al~ 609 (693)
++.+... +.+..+..+...|+.++|+..|+.+.+
T Consensus 89 GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 89 GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp --TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 3444333 345677788888888888888887765
No 319
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.57 E-value=0.048 Score=51.37 Aligned_cols=85 Identities=9% Similarity=0.095 Sum_probs=54.7
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHH-HHHHHHHhCCCChHHHHHHHHHHHhhCC
Q 005499 570 MGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVL-VGSLFSKLGPKALPVARSLLSDALRIEP 648 (693)
Q Consensus 570 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~l~~A~~~~~~al~~~p 648 (693)
|.++....|+++..|...+..-...|.+.+--..|.++++.+|.+++.|.. -+.-+...++.+ .++.++.++++.+|
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~--s~Ra~f~~glR~N~ 173 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIE--SSRAMFLKGLRMNS 173 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHH--HHHHHHHhhhccCC
Confidence 444455566666666666666666666666666777777777777766655 334455556666 67777777777777
Q ss_pred CCHHHHHH
Q 005499 649 TNRKAWYY 656 (693)
Q Consensus 649 ~~~~~~~~ 656 (693)
++|..|..
T Consensus 174 ~~p~iw~e 181 (435)
T COG5191 174 RSPRIWIE 181 (435)
T ss_pred CCchHHHH
Confidence 77766653
No 320
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.57 E-value=0.063 Score=48.42 Aligned_cols=59 Identities=22% Similarity=0.174 Sum_probs=55.3
Q ss_pred HHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC
Q 005499 556 LYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSY 614 (693)
Q Consensus 556 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 614 (693)
.....++.+.|.+.|.+++.+.|+....|+.+|....+.|+++.|...|++.++++|.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 44577899999999999999999999999999999999999999999999999999876
No 321
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.49 E-value=0.42 Score=48.08 Aligned_cols=124 Identities=11% Similarity=0.094 Sum_probs=74.2
Q ss_pred cCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHH
Q 005499 470 QQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQV 549 (693)
Q Consensus 470 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (693)
.|+.-.|-.-+..++...| ..+......+.+....|.|+.+...+..+-..- .....+
T Consensus 302 ~gd~~aas~~~~~~lr~~~--~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~--------------------~s~~~~ 359 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQ--QDPVLIQLRSVIFSHLGYYEQAYQDISDVEKII--------------------GTTDST 359 (831)
T ss_pred ccCHHHHHHHHHHHHHhCC--CCchhhHHHHHHHHHhhhHHHHHHHhhchhhhh--------------------cCCchH
Confidence 4566666666666666666 566666666667777777776665554433321 001223
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCCh
Q 005499 550 WHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYV 615 (693)
Q Consensus 550 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 615 (693)
...+-.....+|++++|.....-.+.-.-+++++...-+......|-++++...+++.+.++|...
T Consensus 360 ~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 360 LRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 333445556667777777776666665556666655555555566667777777777777766543
No 322
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.47 E-value=0.2 Score=50.31 Aligned_cols=124 Identities=9% Similarity=-0.075 Sum_probs=96.2
Q ss_pred hCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHH
Q 005499 559 GLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARS 638 (693)
Q Consensus 559 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~ 638 (693)
..|+...|-+-+..++...|..|......+.+....|+|+.+...+..+-..-.....+...+-.....+|+++ +|..
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~--~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWR--EALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHH--HHHH
Confidence 56788888888888888889888888888899999999999888876665544444455666667777888888 8888
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCC
Q 005499 639 LLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASMLEESD 684 (693)
Q Consensus 639 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 684 (693)
...-.+...-.++++..--+..-..+|-++++..++++.+.++|..
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 8877777666677766666666677788889999999998888754
No 323
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.35 E-value=0.054 Score=48.79 Aligned_cols=60 Identities=22% Similarity=0.354 Sum_probs=43.6
Q ss_pred HHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCH
Q 005499 590 MHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNR 651 (693)
Q Consensus 590 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~ 651 (693)
.....++.+.|.+.|.+++.+.|.....|+.+|....+.|+.+ .|.+-|++.++++|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~d--aAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFD--AAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHH--HHHHHHHHHHcCCcccc
Confidence 3455677777777777777777777777777777777777776 77777777777777653
No 324
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=94.14 E-value=0.1 Score=52.88 Aligned_cols=105 Identities=16% Similarity=0.016 Sum_probs=75.7
Q ss_pred ccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC---CChHHHHHHHHHHHhhCCCChhHHHH
Q 005499 544 VNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGC---GQTHEALRAYINALLIEPSYVPCKVL 620 (693)
Q Consensus 544 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~ 620 (693)
|...+-...-|.--+..+.+..|+..|.+++...|.....+.+.+.++++. |+.-.|+.....+++++|....+++.
T Consensus 371 ~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~ 450 (758)
T KOG1310|consen 371 PENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFR 450 (758)
T ss_pred hHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHH
Confidence 334444444444444455677788888888888888888888887777764 44556677777778888888888888
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHhhCCCC
Q 005499 621 VGSLFSKLGPKALPVARSLLSDALRIEPTN 650 (693)
Q Consensus 621 la~~~~~~g~~~l~~A~~~~~~al~~~p~~ 650 (693)
|+.++.+++++. +|+.+...+....|.+
T Consensus 451 la~aL~el~r~~--eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 451 LARALNELTRYL--EALSCHWALQMSFPTD 478 (758)
T ss_pred HHHHHHHHhhHH--HhhhhHHHHhhcCchh
Confidence 888888888888 8888777666666654
No 325
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.11 E-value=1.4 Score=45.63 Aligned_cols=247 Identities=15% Similarity=0.060 Sum_probs=122.6
Q ss_pred cCCCCCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCCCc
Q 005499 299 MPGVFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLAAKICSEDCHLAAEGIQYARTALSNAQGKDE 378 (693)
Q Consensus 299 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 378 (693)
....|+++...+..+..+...|+.+.|+..++..+.....--.....+-.+.++....++. +|...+....+...
T Consensus 260 ~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~-~aad~~~~L~desd---- 334 (546)
T KOG3783|consen 260 RKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYS-RAADSFDLLRDESD---- 334 (546)
T ss_pred HHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHhhhh----
Confidence 3455667666677788888888877777777776651100012333445565666666666 77777766666432
Q ss_pred chhHhHHHHHHHHHhhhhccc---CChHH-HhHHHHHHHHHHHHHHhcCCCChHHHHHHHhCCHHHHHHHHHHHHHhcC-
Q 005499 379 HLKGVGLRMLGLCLGRHAKVS---SSDYE-RSRLQSEALKSLDGASTFENNNADLFFDLEQRNLSTALRYAKQYIDATG- 453 (693)
Q Consensus 379 ~~~~~~~~~lg~~~~~~~~~~---~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~A~~~~~~al~~~p- 453 (693)
...+..-+..|.|+...+... ....+ .....+.+...+..|-+..|-+.-. ..++ ++.....|
T Consensus 335 WS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~--------~RKv----erf~~~~~~ 402 (546)
T KOG3783|consen 335 WSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFI--------VRKV----ERFVKRGPL 402 (546)
T ss_pred hhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHH--------HHHH----HHHhccccc
Confidence 111222233344543333220 00011 1111122222222222222221111 1111 12222222
Q ss_pred --CCcHHH--HHHHHHHHHHc--CChHHHHHHHHHHHhhcCCC---C-chHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 005499 454 --GSVLKG--WKLLALVLSAQ--QRFSEAEVVTDAALDETTKW---E-QGPILRLKAKLKIAQALPMDAIETYRYLLALV 523 (693)
Q Consensus 454 --~~~~~~--~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~---~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 523 (693)
... .+ ++.++..+..- ...++.. -++..+. .|.. + ..--+..+|.++..+|+...|..+|+..++..
T Consensus 403 ~~~~~-la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~-~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e 479 (546)
T KOG3783|consen 403 NASIL-LASPYYELAYFWNGFSRMSKNELE-KMRAELE-NPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKE 479 (546)
T ss_pred ccccc-ccchHHHHHHHHhhcccCChhhHH-HHHHHHh-ccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 111 11 23333322211 1222222 1111111 1211 1 22346688999999999999999999988664
Q ss_pred HhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHhhCC
Q 005499 524 QAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSH-WKDVAICMGKARELKA 578 (693)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~p 578 (693)
.... .+.-..+-+++.+|..+...+. ..++..++.+|-....
T Consensus 480 ~~~~-------------~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~ 522 (546)
T KOG3783|consen 480 SKRT-------------EDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYAS 522 (546)
T ss_pred Hhhc-------------cccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcc
Confidence 2221 1112236788999999998888 8899999888877653
No 326
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.09 E-value=0.36 Score=39.83 Aligned_cols=76 Identities=16% Similarity=0.119 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHHCCC---hHHHHHHHHHHHh-hCCC-ChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHH
Q 005499 580 SAEMLHTEGVMHEGCGQ---THEALRAYINALL-IEPS-YVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAW 654 (693)
Q Consensus 580 ~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~ 654 (693)
.....+++++++....+ ..+.+.+++..++ -.|. ..+..+.|+..++++++|+ .++.+.+..++..|+|..+.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~--~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYS--KSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHH--HHHHHHHHHHhhCCCcHHHH
Confidence 44567788888776654 4567788888886 4443 3457788888888888888 88888888888888887765
Q ss_pred HHH
Q 005499 655 YYL 657 (693)
Q Consensus 655 ~~l 657 (693)
...
T Consensus 109 ~Lk 111 (149)
T KOG3364|consen 109 ELK 111 (149)
T ss_pred HHH
Confidence 443
No 327
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.03 E-value=8.8 Score=39.96 Aligned_cols=126 Identities=14% Similarity=0.075 Sum_probs=75.3
Q ss_pred HHHhcCCHHHHHHHHHhhcCCCCCcHH-------HHHHHHHHHHHCCCcHH--HHHHHHHHhhccCCCCCHHHHHHHHHH
Q 005499 281 ALSLCSQTSILAKQLEEIMPGVFLRSD-------RWNALALCYSAIGQNDA--ALNLLRKSLHKHERPNDLMALLLAAKI 351 (693)
Q Consensus 281 ~~~~~g~~~~a~~~~e~~l~~~~~~~~-------~~~~la~~~~~~g~~~~--A~~~~~~~l~~~~~p~~~~~~~~~a~~ 351 (693)
+....|.-+.....+.++-...+-... .|+.....+...+.++. ..+.+..... ..|.++...+..+++
T Consensus 199 vvgf~g~r~egl~~Lw~~a~~~s~~~~i~~l~L~~y~~~~~~~~~~p~~d~~~~~~~Ll~~~~--~~p~ga~wll~~ar~ 276 (546)
T KOG3783|consen 199 VVGFSGDRDEGLRLLWEAAKQRNFRGAIALLALLCYYQFISFVLGTPNPDGEECEKALKKYRK--RYPKGALWLLMEARI 276 (546)
T ss_pred HHhhcccHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHhHHHHH--hCCCCccHHHHHHHH
Confidence 344556655555555555443322111 23344444444554443 3333333333 348888888888888
Q ss_pred HHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcC
Q 005499 352 CSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFE 423 (693)
Q Consensus 352 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 423 (693)
....|+ .+.|+..+...+...- .......++-+|.++..+.++ ..|-..+......+
T Consensus 277 l~~~g~-~eaa~~~~~~~v~~~~---kQ~~~l~~fE~aw~~v~~~~~-----------~~aad~~~~L~des 333 (546)
T KOG3783|consen 277 LSIKGN-SEAAIDMESLSIPIRM---KQVKSLMVFERAWLSVGQHQY-----------SRAADSFDLLRDES 333 (546)
T ss_pred HHHccc-HHHHHHHHHhcccHHH---HHHHHHHHHHHHHHHHHHHHH-----------HHHhhHHHHHHhhh
Confidence 888888 6588888877777221 334466777788888888888 88887777666443
No 328
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.65 E-value=1.4 Score=36.55 Aligned_cols=74 Identities=16% Similarity=-0.009 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHhCCC---hHHHHHHHHHHHh-hCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHH
Q 005499 546 EFQVWHGLANLYSGLSH---WKDVAICMGKARE-LKAY-SAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKV 619 (693)
Q Consensus 546 ~~~~~~~la~~~~~~~~---~~~A~~~~~~al~-~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 619 (693)
.....+++++++....+ ..+.+.+++..++ -.|. .-+..+.++..+.+.++|+.++.+....++..|++..+..
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 35667777777776553 4566777777775 3333 2356677777888888888888888888888887766544
No 329
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.56 E-value=0.15 Score=32.79 Aligned_cols=30 Identities=20% Similarity=0.253 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Q 005499 652 KAWYYLGLVHKDDGRIADAADCFQAASMLE 681 (693)
Q Consensus 652 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 681 (693)
.++.++|.+|...|++++|..++++++.+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 567889999999999999999999998853
No 330
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=93.50 E-value=0.057 Score=50.88 Aligned_cols=84 Identities=11% Similarity=0.059 Sum_probs=72.2
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHcCChHHHHHHHHHHHhccc
Q 005499 604 YINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYY-LGLVHKDDGRIADAADCFQAASMLEE 682 (693)
Q Consensus 604 ~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~-lg~~~~~~g~~~~A~~~~~~al~l~p 682 (693)
|.++-...|+++..|...+.-..+.|.+. +--..|.++++.+|.+.+.|.. .+.-+...++++.+...|.+++.++|
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~--~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~ 173 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYG--EMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNS 173 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHH--HHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCC
Confidence 34444556888999988887777888888 8899999999999999999987 66778889999999999999999999
Q ss_pred CCCCCcc
Q 005499 683 SDPIESF 689 (693)
Q Consensus 683 ~~~~~~~ 689 (693)
++|.+++
T Consensus 174 ~~p~iw~ 180 (435)
T COG5191 174 RSPRIWI 180 (435)
T ss_pred CCchHHH
Confidence 9998765
No 331
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.27 E-value=0.095 Score=29.67 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhhcCCHHHHHhhhcc
Q 005499 56 EARALLGRLEYQRGNVEGALRVFDG 80 (693)
Q Consensus 56 ~a~~~lg~~~~~~g~~~~A~~~~~~ 80 (693)
.+++.||.++..+|++++|...+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 4677889999999999999888763
No 332
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.15 E-value=1.2 Score=37.78 Aligned_cols=83 Identities=14% Similarity=0.062 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 005499 583 MLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHK 662 (693)
Q Consensus 583 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 662 (693)
.+......-...++.+++...+...--+.|+.+..-..-|.++...|++. +|+..++...+..+..+.+--.++.++.
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~--eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYD--EAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHH--HHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 34444455556899999999999888899999999999999999999999 9999999998888887877777888888
Q ss_pred HcCCh
Q 005499 663 DDGRI 667 (693)
Q Consensus 663 ~~g~~ 667 (693)
.+|+.
T Consensus 90 al~Dp 94 (153)
T TIGR02561 90 AKGDA 94 (153)
T ss_pred hcCCh
Confidence 88774
No 333
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.13 E-value=0.73 Score=41.33 Aligned_cols=102 Identities=17% Similarity=0.069 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCC-CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcCC-CcchhHhHH
Q 005499 308 RWNALALCYSAIGQNDAALNLLRKSLHKHERPN-DLMALLLAAKICSEDCHLAAEGIQYARTALSNAQGK-DEHLKGVGL 385 (693)
Q Consensus 308 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~-~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~ 385 (693)
.+..+|..|.+.|+.+.|++.|.++......|. ....++...++++..+++. ....+..++-...... +........
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~-~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWS-HVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHHHhccchHHHHHHHH
Confidence 455666666666666666666666655332233 2333444555566666666 5555555555543321 112224455
Q ss_pred HHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHh
Q 005499 386 RMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGAST 421 (693)
Q Consensus 386 ~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 421 (693)
..-|..+...+++ .+|...|-.+..
T Consensus 117 ~~~gL~~l~~r~f-----------~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDF-----------KEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchH-----------HHHHHHHHccCc
Confidence 5667777778888 888888877653
No 334
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.90 E-value=7.6 Score=40.60 Aligned_cols=43 Identities=14% Similarity=-0.017 Sum_probs=20.8
Q ss_pred hCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHH
Q 005499 559 GLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYIN 606 (693)
Q Consensus 559 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 606 (693)
+.|+.+.|.+..+ ..+++..|..+|.....+|+++-|..+|++
T Consensus 330 ~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 330 QLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp HCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred hcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 4555555544322 122444555555555555555555555554
No 335
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=92.89 E-value=2.5 Score=44.18 Aligned_cols=134 Identities=17% Similarity=-0.035 Sum_probs=85.4
Q ss_pred HHHHHHHHHhhcCCCCchHHHHH--HHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHH
Q 005499 476 AEVVTDAALDETTKWEQGPILRL--KAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGL 553 (693)
Q Consensus 476 A~~~~~~al~~~p~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 553 (693)
++..+...+..++ .++.++.. +...+...++...+.......+..+ +.++.+..++
T Consensus 50 ~~~a~~~~~~~~~--~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~--------------------~~~~~~~~~L 107 (620)
T COG3914 50 AIYALLLGIAIND--VNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVN--------------------PENCPAVQNL 107 (620)
T ss_pred HHHHHHccCccCC--CCHHHHHHHHHHhhccccccchhHHHHHhhhHhcC--------------------cccchHHHHH
Confidence 5555555555666 55555332 3555555667667777777777776 3346777777
Q ss_pred HHHHHhCCChHHHHHHHHH-HHhhCCCCHHHHHHH------HHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q 005499 554 ANLYSGLSHWKDVAICMGK-ARELKAYSAEMLHTE------GVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFS 626 (693)
Q Consensus 554 a~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~~l------g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 626 (693)
+......|..-.+...+.. +....|.+......+ +......|+..++....++++...|.++.....+.....
T Consensus 108 ~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~ 187 (620)
T COG3914 108 AAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQ 187 (620)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHH
Confidence 7776666665555544444 777777776655444 777777788888888888888888887666655555544
Q ss_pred HhCCC
Q 005499 627 KLGPK 631 (693)
Q Consensus 627 ~~g~~ 631 (693)
+.-.+
T Consensus 188 ~~cs~ 192 (620)
T COG3914 188 EQCSW 192 (620)
T ss_pred Hhccc
Confidence 44433
No 336
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.80 E-value=8.5 Score=36.09 Aligned_cols=40 Identities=23% Similarity=0.270 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHH---------HhCCHHHHHHHHHHHH
Q 005499 410 SEALKSLDGASTFENNNADLFFDL---------EQRNLSTALRYAKQYI 449 (693)
Q Consensus 410 ~~A~~~~~~al~~~p~~~~~~~~l---------~~~~~~~A~~~~~~al 449 (693)
++|+..|++.+++.+.-.+.-+.. ..+++++-+..|.+.+
T Consensus 44 ~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 44 KEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred HHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 566666666666555443221111 4555555555555544
No 337
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.75 E-value=0.86 Score=47.72 Aligned_cols=88 Identities=13% Similarity=0.032 Sum_probs=41.1
Q ss_pred HHHHHCCChHHHHHHHHHHHhhCCCC------hhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 005499 589 VMHEGCGQTHEALRAYINALLIEPSY------VPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHK 662 (693)
Q Consensus 589 ~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 662 (693)
.-+++..+|..++++|...+..-|.+ ......++.||..+.+.+ .|.+++++|-+.+|.++-....+-.+..
T Consensus 362 ~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD--~A~E~~~EAE~~d~~~~l~q~~~~~~~~ 439 (872)
T KOG4814|consen 362 KKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLD--NAVEVYQEAEEVDRQSPLCQLLMLQSFL 439 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHH--HHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 33344444444555544444433332 123344444555554444 5555555555555555544444444444
Q ss_pred HcCChHHHHHHHHHHH
Q 005499 663 DDGRIADAADCFQAAS 678 (693)
Q Consensus 663 ~~g~~~~A~~~~~~al 678 (693)
..|.-++|+.+..+..
T Consensus 440 ~E~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 440 AEDKSEEALTCLQKIK 455 (872)
T ss_pred HhcchHHHHHHHHHHH
Confidence 5555555554444433
No 338
>PF12854 PPR_1: PPR repeat
Probab=92.73 E-value=0.3 Score=29.79 Aligned_cols=28 Identities=11% Similarity=0.027 Sum_probs=15.6
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 005499 270 WDPAVMEHLTYALSLCSQTSILAKQLEE 297 (693)
Q Consensus 270 ~~~~~~~~l~~~~~~~g~~~~a~~~~e~ 297 (693)
+|...|+.|...|++.|+.++|.+.|++
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 4455555555555555555555555554
No 339
>PF12854 PPR_1: PPR repeat
Probab=92.51 E-value=0.3 Score=29.79 Aligned_cols=30 Identities=23% Similarity=0.259 Sum_probs=27.3
Q ss_pred CCcHHHHHHHHHHHHHCCCcHHHHHHHHHH
Q 005499 303 FLRSDRWNALALCYSAIGQNDAALNLLRKS 332 (693)
Q Consensus 303 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 332 (693)
.++..+|..+...+.+.|+.++|.++|+++
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 467889999999999999999999999875
No 340
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.50 E-value=1 Score=47.21 Aligned_cols=102 Identities=15% Similarity=0.019 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 005499 495 ILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKAR 574 (693)
Q Consensus 495 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 574 (693)
++.+-+.-..+..+|..+++.|...+...|.+.. ..........+..+|..+.+.+.|.+++++|-
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~--------------~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE 421 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNY--------------SDRFAKIQRALQVCYLKLEQLDNAVEVYQEAE 421 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhh--------------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3445566677888999999999999988766531 12236778889999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q 005499 575 ELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLI 610 (693)
Q Consensus 575 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 610 (693)
+.+|.++-.....-.+....|.-++|+.+.......
T Consensus 422 ~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 422 EVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred hhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 999999988888888888899999999988776653
No 341
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=92.41 E-value=20 Score=39.44 Aligned_cols=219 Identities=11% Similarity=-0.025 Sum_probs=125.2
Q ss_pred hcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCcHHHHHHHHHHH---HHCCCcHHHHHHHHHHhhccCCCCC
Q 005499 265 LGKIKWDPAVMEHLTYALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCY---SAIGQNDAALNLLRKSLHKHERPND 341 (693)
Q Consensus 265 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~---~~~g~~~~A~~~~~~~l~~~~~p~~ 341 (693)
+...+.+...+..|...+.+.|+.++....-..+....|..+..|.....-. ...+...++..+|++++.. -.+
T Consensus 106 ~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~d---y~~ 182 (881)
T KOG0128|consen 106 LAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGD---YNS 182 (881)
T ss_pred hcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcc---ccc
Confidence 3344555667777888888999988766665555566666777776654433 3457788899999999873 344
Q ss_pred HHHHHHHHHHHHh-------cCCcHHHHHHHHHHHHHhhcCCC--cchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHH
Q 005499 342 LMALLLAAKICSE-------DCHLAAEGIQYARTALSNAQGKD--EHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEA 412 (693)
Q Consensus 342 ~~~~~~~a~~~~~-------~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A 412 (693)
+..+.-.+..... .+++. .-...+.+++......- .......+.-.-..|...-.. ++-
T Consensus 183 v~iw~e~~~y~~~~~~~~~~~~d~k-~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~-----------~qv 250 (881)
T KOG0128|consen 183 VPIWEEVVNYLVGFGNVAKKSEDYK-KERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQ-----------RQV 250 (881)
T ss_pred chHHHHHHHHHHhccccccccccch-hhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHH-----------HHH
Confidence 4444444433332 23333 55667777776543111 111133334444444444444 666
Q ss_pred HHHHHHHHhcCCCChHHHHHH------------HhCCHHHHHHHH-------HHHHHhcCCCcHHHHHHHHHHHHHcCCh
Q 005499 413 LKSLDGASTFENNNADLFFDL------------EQRNLSTALRYA-------KQYIDATGGSVLKGWKLLALVLSAQQRF 473 (693)
Q Consensus 413 ~~~~~~al~~~p~~~~~~~~l------------~~~~~~~A~~~~-------~~al~~~p~~~~~~~~~la~~~~~~g~~ 473 (693)
+.+|...+... -+.++...- ...+++.|.... .+.+...|... ..|..+..-....|..
T Consensus 251 ~a~~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~-q~~~~yidfe~~~G~p 328 (881)
T KOG0128|consen 251 IALFVRELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKD-QEWMSYIDFEKKSGDP 328 (881)
T ss_pred HHHHHHHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHhcCCc
Confidence 77777776543 332221111 344444444443 33333344443 5566666667777888
Q ss_pred HHHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 005499 474 SEAEVVTDAALDETTKWEQGPILRLKAKL 502 (693)
Q Consensus 474 ~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 502 (693)
..-...+++++...+ .+...|...+..
T Consensus 329 ~ri~l~~eR~~~E~~--~~~~~wi~y~~~ 355 (881)
T KOG0128|consen 329 VRIQLIEERAVAEMV--LDRALWIGYGVY 355 (881)
T ss_pred hHHHHHHHHHHHhcc--ccHHHHhhhhhh
Confidence 877888888887777 556666555443
No 342
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=92.35 E-value=0.39 Score=29.67 Aligned_cols=34 Identities=15% Similarity=0.236 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHH--HHHHHhcccCC
Q 005499 651 RKAWYYLGLVHKDDGRIADAADC--FQAASMLEESD 684 (693)
Q Consensus 651 ~~~~~~lg~~~~~~g~~~~A~~~--~~~al~l~p~~ 684 (693)
++.|+.+|..+..+|++++|+.. |+-+..++|.|
T Consensus 1 ~e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 1 PEYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred CcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 35678889999999999999999 44777776654
No 343
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=92.27 E-value=5.9 Score=41.87 Aligned_cols=60 Identities=13% Similarity=0.124 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHhhcc-----------CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 005499 308 RWNALALCYSAIGQNDAALNLLRKSLHKH-----------ERPNDLMALLLAAKICSEDCHLAAEGIQYART 368 (693)
Q Consensus 308 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----------~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~ 368 (693)
-|-.+|...+..=+++-|.+.|.++-... .......--.+++.++.-.+.+. +|.+.|.+
T Consensus 587 DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~-EAAklFk~ 657 (1081)
T KOG1538|consen 587 DWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADVFAYQGKFH-EAAKLFKR 657 (1081)
T ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHH-HHHHHHHH
Confidence 36666666666666666666665543210 00111112234556666666666 66665543
No 344
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.27 E-value=8.5 Score=40.31 Aligned_cols=140 Identities=14% Similarity=0.005 Sum_probs=86.5
Q ss_pred hcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh-----hcCCC--------------CchH---HHHHHHHHHHHhCC
Q 005499 451 ATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALD-----ETTKW--------------EQGP---ILRLKAKLKIAQAL 508 (693)
Q Consensus 451 ~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~p~~--------------~~~~---~~~~l~~~~~~~g~ 508 (693)
..|-+. ..+..++.+...+|+.+-|...+++++= .+|.+ .+-. +++.....+.+.|-
T Consensus 279 ssPYHv-dsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC 357 (665)
T KOG2422|consen 279 SSPYHV-DSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGC 357 (665)
T ss_pred cCCcch-hHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 357777 8889999999999999888888887763 12211 1211 23334455667788
Q ss_pred hhHHHHHHHHHHHHHHh-hhhhcCCcccccchhhhcccHHHHHHHHHHH-HHhCCChHHHHHHHHHHH-----hhCCCCH
Q 005499 509 PMDAIETYRYLLALVQA-QRKSFGPLRCLSQIEDDKVNEFQVWHGLANL-YSGLSHWKDVAICMGKAR-----ELKAYSA 581 (693)
Q Consensus 509 ~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-~~~~~~~~~A~~~~~~al-----~~~p~~~ 581 (693)
+..|.++++-+++++|. +| .+...+.++ ..+..+|.=-++.++..- ...|+.+
T Consensus 358 ~rTA~E~cKlllsLdp~eDP--------------------l~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~ 417 (665)
T KOG2422|consen 358 WRTALEWCKLLLSLDPSEDP--------------------LGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFG 417 (665)
T ss_pred hHHHHHHHHHHhhcCCcCCc--------------------hhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCch
Confidence 99999999999998865 42 333333333 345556665555555542 2334433
Q ss_pred HHHHHHHHHHHHCCC---hHHHHHHHHHHHhhCC
Q 005499 582 EMLHTEGVMHEGCGQ---THEALRAYINALLIEP 612 (693)
Q Consensus 582 ~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p 612 (693)
. -..++..+..... ...|...+.+|+...|
T Consensus 418 y-S~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 418 Y-SLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred H-HHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 2 2345555555544 4667778888887766
No 345
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=92.19 E-value=9.7 Score=38.05 Aligned_cols=135 Identities=16% Similarity=0.060 Sum_probs=90.2
Q ss_pred HHHcCChHHHHHHHHHHHhhcCCC-------CchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccch
Q 005499 467 LSAQQRFSEAEVVTDAALDETTKW-------EQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQI 539 (693)
Q Consensus 467 ~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 539 (693)
+..++++.+|..+-+..+...... -....|+.+..++...|+...-...+...+....-.
T Consensus 136 l~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLr------------- 202 (493)
T KOG2581|consen 136 LIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLR------------- 202 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhc-------------
Confidence 345577888877776655421100 123456777777888888766666666555543211
Q ss_pred hhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCCh
Q 005499 540 EDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKAREL----KAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYV 615 (693)
Q Consensus 540 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 615 (693)
.+....+...+.+-..|...+.|+.|.....+..-- +...+..++.+|.+..-+++|..|.++|-+|+...|.+.
T Consensus 203 -hd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 203 -HDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred -CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 111334566677788888999999998887765411 112245678899999999999999999999999999753
No 346
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=91.86 E-value=0.5 Score=48.23 Aligned_cols=88 Identities=22% Similarity=0.178 Sum_probs=61.2
Q ss_pred CChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhC---CCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHH
Q 005499 595 GQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLG---PKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAA 671 (693)
Q Consensus 595 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 671 (693)
+.+..|+..|.+++...|.....+.+.+.++.+.+ +.- .|+.....+++++|....+|+.|+.++...+++.+|+
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~--~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal 465 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSY--LALRDCHVALRLNPSIQKAHFRLARALNELTRYLEAL 465 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHH--HHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhh
Confidence 34556777777777777777777777777776643 333 5666667777777777777777777777777777777
Q ss_pred HHHHHHHhcccCC
Q 005499 672 DCFQAASMLEESD 684 (693)
Q Consensus 672 ~~~~~al~l~p~~ 684 (693)
++...+....|++
T Consensus 466 ~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 466 SCHWALQMSFPTD 478 (758)
T ss_pred hhHHHHhhcCchh
Confidence 7776666666643
No 347
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.72 E-value=8.5 Score=33.63 Aligned_cols=25 Identities=16% Similarity=0.086 Sum_probs=11.2
Q ss_pred HHHHHHHHHCCCcHHHHHHHHHHhh
Q 005499 310 NALALCYSAIGQNDAALNLLRKSLH 334 (693)
Q Consensus 310 ~~la~~~~~~g~~~~A~~~~~~~l~ 334 (693)
+..|....+.|+...|+..|.++-.
T Consensus 98 mr~at~~a~kgdta~AV~aFdeia~ 122 (221)
T COG4649 98 MRAATLLAQKGDTAAAVAAFDEIAA 122 (221)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHhc
Confidence 3334444444444444444444443
No 348
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=91.40 E-value=2.7 Score=33.01 Aligned_cols=65 Identities=12% Similarity=0.133 Sum_probs=44.4
Q ss_pred HHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC
Q 005499 502 LKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELK 577 (693)
Q Consensus 502 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 577 (693)
.....|++.+|++.+.+.+.......... .......++..+|.++...|++++|+..+++++.+.
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~-----------~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSS-----------SNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccch-----------hhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34567899999999998888764432000 001224566778888888888888888888887764
No 349
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.39 E-value=17 Score=36.56 Aligned_cols=128 Identities=13% Similarity=0.106 Sum_probs=102.4
Q ss_pred ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC--hHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCC---ChHHH
Q 005499 562 HWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQ--THEALRAYINALLIEPSYVPCKVLVGSLFSKLGPK---ALPVA 636 (693)
Q Consensus 562 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~---~l~~A 636 (693)
-+++-+.+...++..+|++..+|+.+..++.+.+. +..-++..+++++.+|.+..+|...-.+....... . .+=
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~-~~E 168 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLE-KEE 168 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccc-hhH
Confidence 46677888899999999999999999999998765 67889999999999999999988877776655443 2 266
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHH------cCC------hHHHHHHHHHHHhcccCCCCCccc
Q 005499 637 RSLLSDALRIEPTNRKAWYYLGLVHKD------DGR------IADAADCFQAASMLEESDPIESFS 690 (693)
Q Consensus 637 ~~~~~~al~~~p~~~~~~~~lg~~~~~------~g~------~~~A~~~~~~al~l~p~~~~~~~~ 690 (693)
+++..+++..++.|..+|.+...++.. .|+ ...-++.-..|+-.+|+++...|.
T Consensus 169 l~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY 234 (421)
T KOG0529|consen 169 LEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY 234 (421)
T ss_pred HHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeee
Confidence 788889999999999999998888762 342 234566777888889999887764
No 350
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.34 E-value=17 Score=38.29 Aligned_cols=165 Identities=10% Similarity=-0.034 Sum_probs=107.2
Q ss_pred CChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhh-----C----
Q 005499 507 ALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKAREL-----K---- 577 (693)
Q Consensus 507 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~---- 577 (693)
..|++|...|.-+....+.+. +.......|.+...+..++.+...+|+.+-|....++++-. .
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~--------v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~ 323 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNN--------VLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFI 323 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcc--------eeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccc
Confidence 356677777777766543221 11122344888999999999999999999888888877621 1
Q ss_pred ------------CCCH---HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC-ChhHHHHHHHHHH-HhCCCChHHHHHHH
Q 005499 578 ------------AYSA---EMLHTEGVMHEGCGQTHEALRAYINALLIEPS-YVPCKVLVGSLFS-KLGPKALPVARSLL 640 (693)
Q Consensus 578 ------------p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~-~~g~~~l~~A~~~~ 640 (693)
|.+- .+++..-..+...|-+..|.++.+-.++++|. ++-+...+...|. +..+|. =-+.++
T Consensus 324 ~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYq--wiI~~~ 401 (665)
T KOG2422|consen 324 PFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQ--WIIELS 401 (665)
T ss_pred cccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHH--HHHHHH
Confidence 1221 23344455667889999999999999999998 7776666666654 444444 333333
Q ss_pred HHH-----HhhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhccc
Q 005499 641 SDA-----LRIEPTNRKAWYYLGLVHKDDGR---IADAADCFQAASMLEE 682 (693)
Q Consensus 641 ~~a-----l~~~p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~l~p 682 (693)
+.. +..-|+.+. -..++..|..... -+.|...+.+|+...|
T Consensus 402 ~~~e~~n~l~~~PN~~y-S~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 402 NEPENMNKLSQLPNFGY-SLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHHhhccHhhcCCchH-HHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 333 233454322 2235555555544 4568889999998877
No 351
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=91.29 E-value=14 Score=35.16 Aligned_cols=167 Identities=14% Similarity=0.062 Sum_probs=93.5
Q ss_pred HHHHHHHHHHCCCcHHHHHHHHHHhhcc----CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhc--CCCcchhH
Q 005499 309 WNALALCYSAIGQNDAALNLLRKSLHKH----ERPNDLMALLLAAKICSEDCHLAAEGIQYARTALSNAQ--GKDEHLKG 382 (693)
Q Consensus 309 ~~~la~~~~~~g~~~~A~~~~~~~l~~~----~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~ 382 (693)
-..++..+++.|+|.+|+.+..-++... ..|.-...+++-.+++..-.+.. ++..-+..+-.... -.+..+.+
T Consensus 128 e~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~-KskaSLTaArt~Ans~YCPpqlqa 206 (421)
T COG5159 128 ECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVS-KSKASLTAARTLANSAYCPPQLQA 206 (421)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhh-hhhhHHHHHHHHhhccCCCHHHHH
Confidence 3557889999999999999887776421 22455666777777776655554 44333333222111 11133345
Q ss_pred hHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcC---CCChHHHHHH--------HhCCHHHHHHHHH--HHH
Q 005499 383 VGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFE---NNNADLFFDL--------EQRNLSTALRYAK--QYI 449 (693)
Q Consensus 383 ~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l--------~~~~~~~A~~~~~--~al 449 (693)
..-..-|..++...++ ..|-.+|-.+++-. ..+..+...+ ..+..++....++ ..+
T Consensus 207 ~lDL~sGIlhcdd~dy-----------ktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~ 275 (421)
T COG5159 207 QLDLLSGILHCDDRDY-----------KTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTL 275 (421)
T ss_pred HHHHhccceeeccccc-----------hhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhH
Confidence 5555567777888888 88999998887532 2333333322 3333333322221 122
Q ss_pred H-hcCCCcHHHHHHHHHHHHH--cCChHHHHHHHHHHHhhcC
Q 005499 450 D-ATGGSVLKGWKLLALVLSA--QQRFSEAEVVTDAALDETT 488 (693)
Q Consensus 450 ~-~~p~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p 488 (693)
+ .+.... +++...+..+.. ..+|..|+..|..-+..+|
T Consensus 276 ~~y~~r~I-~am~avaea~~NRsL~df~~aL~qY~~el~~D~ 316 (421)
T COG5159 276 KHYDDRMI-RAMLAVAEAFGNRSLKDFSDALAQYSDELHQDS 316 (421)
T ss_pred hhhhhhhH-HHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCH
Confidence 2 122223 555555655533 3567777777776655554
No 352
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=91.29 E-value=2.1 Score=49.14 Aligned_cols=170 Identities=13% Similarity=0.036 Sum_probs=124.5
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005499 496 LRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARE 575 (693)
Q Consensus 496 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 575 (693)
....+......|.+.+|.+ ..+++....+.. ...++.....+..++.++...++.++|+..-.++.-
T Consensus 935 ~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~------------~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~i 1001 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYE-LPESLNLLNNVM------------GVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACI 1001 (1236)
T ss_pred hhhhhhhhhcccchhhhhh-hhhhhhHHHHhh------------hhcchhHHHHHHHHHHHHhhhcchHHHHHhccccee
Confidence 3455666666777777777 555555442221 122356688999999999999999999998877654
Q ss_pred h--------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--------CCCChhHHHHHHHHHHHhCCCChHHHHHH
Q 005499 576 L--------KAYSAEMLHTEGVMHEGCGQTHEALRAYINALLI--------EPSYVPCKVLVGSLFSKLGPKALPVARSL 639 (693)
Q Consensus 576 ~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~l~~A~~~ 639 (693)
+ .|+....+.+++...+..++...|...+.++..+ .|.-.....+++.++...++++ .|+++
T Consensus 1002 i~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d--~al~~ 1079 (1236)
T KOG1839|consen 1002 ISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEAD--TALRY 1079 (1236)
T ss_pred eechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHH--HHHHH
Confidence 3 2445567888888888889999999999888764 3444445678888888889998 99999
Q ss_pred HHHHHhhCC-----C---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 005499 640 LSDALRIEP-----T---NRKAWYYLGLVHKDDGRIADAADCFQAASML 680 (693)
Q Consensus 640 ~~~al~~~p-----~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 680 (693)
++.|+...- . ....+..++.++...+++..|....+....+
T Consensus 1080 le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1080 LESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred HHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 999988532 1 3455667888888888888888877766654
No 353
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=91.27 E-value=33 Score=39.55 Aligned_cols=95 Identities=13% Similarity=-0.079 Sum_probs=71.7
Q ss_pred HHHHHhcCCHHHHHHHHHhhcCCCCC---cHHHHHHHHHHHHHC----C---CcHHHHHHHHHHhhccCCCCCHHHHHHH
Q 005499 279 TYALSLCSQTSILAKQLEEIMPGVFL---RSDRWNALALCYSAI----G---QNDAALNLLRKSLHKHERPNDLMALLLA 348 (693)
Q Consensus 279 ~~~~~~~g~~~~a~~~~e~~l~~~~~---~~~~~~~la~~~~~~----g---~~~~A~~~~~~~l~~~~~p~~~~~~~~~ 348 (693)
..++.....|+.|+..|.++-..-|+ .-++.+..|..++.+ | .+++|+..|++.-. .|.-+.-++..
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 558 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG---GVGAPLEYLGK 558 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC---CCCCchHHHhH
Confidence 45666778899999999888655444 455777877777643 2 47788888887665 47888888888
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcCCC
Q 005499 349 AKICSEDCHLAAEGIQYARTALSNAQGKD 377 (693)
Q Consensus 349 a~~~~~~~~~~~~A~~~~~~al~~~~~~~ 377 (693)
|.+|...+++. +-++.+.-++++.|..+
T Consensus 559 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 586 (932)
T PRK13184 559 ALVYQRLGEYN-EEIKSLLLALKRYSQHP 586 (932)
T ss_pred HHHHHHhhhHH-HHHHHHHHHHHhcCCCC
Confidence 88888888888 88888889999888554
No 354
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=90.90 E-value=29 Score=38.29 Aligned_cols=119 Identities=10% Similarity=0.015 Sum_probs=67.2
Q ss_pred hCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HcCChHHHHHHHHHHHhhcCCCCchH-HHHHHHHHHHHhCChhHH
Q 005499 435 QRNLSTALRYAKQYIDATGGSVLKGWKLLALVLS-AQQRFSEAEVVTDAALDETTKWEQGP-ILRLKAKLKIAQALPMDA 512 (693)
Q Consensus 435 ~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~-~~~~l~~~~~~~g~~~~A 512 (693)
...+..|..++.......-+.....+...|.+.. .+++.+.++.+.+..+.... .... .|.....+-...|+...+
T Consensus 439 r~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~--~~iag~Wle~~~lE~~~g~~~~~ 516 (881)
T KOG0128|consen 439 RAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGG--GSIAGKWLEAINLEREYGDGPSA 516 (881)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCc--chHHHHHHHHHhHHHHhCCchhH
Confidence 3345555555555544322211144555555544 44678888888887766555 3444 677777777777888888
Q ss_pred HHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHH
Q 005499 513 IETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGK 572 (693)
Q Consensus 513 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 572 (693)
...+++++..- ..+ .....++..+-......|.++....+..+
T Consensus 517 R~~~R~ay~~~-~~~----------------~~~~ev~~~~~r~Ere~gtl~~~~~~~~~ 559 (881)
T KOG0128|consen 517 RKVLRKAYSQV-VDP----------------EDALEVLEFFRRFEREYGTLESFDLCPEK 559 (881)
T ss_pred HHHHHHHHhcC-cCc----------------hhHHHHHHHHHHHHhccccHHHHhhhHHh
Confidence 88777776542 110 11234444444555556666665554443
No 355
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=90.88 E-value=3.7 Score=32.29 Aligned_cols=59 Identities=15% Similarity=0.042 Sum_probs=42.8
Q ss_pred HHcCChHHHHHHHHHHHhhcCCCC-------chHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhh
Q 005499 468 SAQQRFSEAEVVTDAALDETTKWE-------QGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQ 526 (693)
Q Consensus 468 ~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 526 (693)
...|+|.+|++.+.+.++...... ...++..++.+....|++++|+..+++++.+....
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 456778888777777666433111 13456778889999999999999999999987655
No 356
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.24 E-value=0.37 Score=27.21 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHH
Q 005499 652 KAWYYLGLVHKDDGRIADAADCFQ 675 (693)
Q Consensus 652 ~~~~~lg~~~~~~g~~~~A~~~~~ 675 (693)
.+...+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356677777777777777777664
No 357
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.18 E-value=13 Score=33.57 Aligned_cols=78 Identities=17% Similarity=0.111 Sum_probs=52.6
Q ss_pred ChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHH
Q 005499 472 RFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWH 551 (693)
Q Consensus 472 ~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (693)
.-++|...|-++ +..|..+.+...+.+|..|. ..+.++|+..+.++++..+... ..+++++.
T Consensus 121 ~d~~A~~~fL~~-E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~----------------~~n~eil~ 182 (203)
T PF11207_consen 121 GDQEALRRFLQL-EGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDD----------------NFNPEILK 182 (203)
T ss_pred CcHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCC----------------CCCHHHHH
Confidence 345666666553 33343356677777777776 4577888888888888764332 44577888
Q ss_pred HHHHHHHhCCChHHHH
Q 005499 552 GLANLYSGLSHWKDVA 567 (693)
Q Consensus 552 ~la~~~~~~~~~~~A~ 567 (693)
.|+.++...|+++.|-
T Consensus 183 sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 183 SLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHhcchhhhh
Confidence 8888888888887764
No 358
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=90.03 E-value=0.67 Score=28.01 Aligned_cols=33 Identities=24% Similarity=0.425 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCC
Q 005499 308 RWNALALCYSAIGQNDAALNLLRKSLHKHERPN 340 (693)
Q Consensus 308 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~ 340 (693)
+|..+..+|.+.|++++|..+|+++.+.+..|+
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 467778888888888899888888887655554
No 359
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=89.97 E-value=2.2 Score=40.38 Aligned_cols=72 Identities=13% Similarity=0.106 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHH
Q 005499 549 VWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVL 620 (693)
Q Consensus 549 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 620 (693)
...++-..+...++++.|..+.++.+.++|.++.-+.-.|.+|.+.|.+.-|++.++..+...|+.+.+-.-
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~i 254 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMI 254 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHH
Confidence 334455667788888888888888888888888888888888888888888888888888888887765443
No 360
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=89.94 E-value=30 Score=36.94 Aligned_cols=179 Identities=17% Similarity=0.081 Sum_probs=88.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHH------HHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcc
Q 005499 461 KLLALVLSAQQRFSEAEVVTDA------ALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLR 534 (693)
Q Consensus 461 ~~la~~~~~~g~~~~A~~~~~~------al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~ 534 (693)
..+|.++.-.|+|.+|.++|.+ +++... + --++..+.-+...|..++-....++--+-..+
T Consensus 636 iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyT---D-lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~--------- 702 (1081)
T KOG1538|consen 636 LLLADVFAYQGKFHEAAKLFKRSGHENRALEMYT---D-LRMFDYAQEFLGSGDPKEKKMLIRKRADWARN--------- 702 (1081)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHH---H-HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhh---------
Confidence 4567777778888888888765 222222 0 11234444555555555443333332211100
Q ss_pred cccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHH----------HHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHH
Q 005499 535 CLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMG----------KARELKAYSAEMLHTEGVMHEGCGQTHEALRAY 604 (693)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~----------~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 604 (693)
...+. .-+..+...|+.++|+.+.- -+-+++....+.+...+..+.....+.-|.+.|
T Consensus 703 ---------~kePk---aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF 770 (1081)
T KOG1538|consen 703 ---------IKEPK---AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIF 770 (1081)
T ss_pred ---------cCCcH---HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHH
Confidence 11111 23455666777777665431 112223333444555555555555555555555
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005499 605 INALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAA 677 (693)
Q Consensus 605 ~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 677 (693)
.+.-. .-.+..++.+.++++ +|....++--+.- +++++-.|+-+....+++||-+.|.+|
T Consensus 771 ~k~gD--------~ksiVqlHve~~~W~--eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 771 LKMGD--------LKSLVQLHVETQRWD--EAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred HHhcc--------HHHHhhheeecccch--HhHhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 54322 122334555667777 7766554432222 235555566666666666666655544
No 361
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=89.26 E-value=4.3 Score=40.39 Aligned_cols=141 Identities=13% Similarity=0.039 Sum_probs=94.8
Q ss_pred HHHHHHHH--HHHHhCCChHHHHHHHHHHHhh-CCC--------CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC----
Q 005499 547 FQVWHGLA--NLYSGLSHWKDVAICMGKAREL-KAY--------SAEMLHTEGVMHEGCGQTHEALRAYINALLIE---- 611 (693)
Q Consensus 547 ~~~~~~la--~~~~~~~~~~~A~~~~~~al~~-~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---- 611 (693)
..++..+- ..+...+++++|..+-+..+.. .-. .+..|+.+..++...|+...-...+...+...
T Consensus 124 i~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrh 203 (493)
T KOG2581|consen 124 IEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRH 203 (493)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcC
Confidence 34444433 3344568889988877765532 111 24568888899999999776666666555431
Q ss_pred -CCC-hhHHHHHHHHHHHhCCCChHHHHHHHHHHHh--hCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCC
Q 005499 612 -PSY-VPCKVLVGSLFSKLGPKALPVARSLLSDALR--IEPTN--RKAWYYLGLVHKDDGRIADAADCFQAASMLEESDP 685 (693)
Q Consensus 612 -p~~-~~~~~~la~~~~~~g~~~l~~A~~~~~~al~--~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 685 (693)
... ....+.|-..|...+.++ .|..+..+..- ...++ ....+.+|.+..-+++|..|.++|-+|+...|++.
T Consensus 204 d~e~qavLiN~LLr~yL~n~lyd--qa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 204 DEEGQAVLINLLLRNYLHNKLYD--QADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred cchhHHHHHHHHHHHHhhhHHHH--HHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 111 234556677788888888 88887776542 11122 34566799999999999999999999999999866
Q ss_pred CCcc
Q 005499 686 IESF 689 (693)
Q Consensus 686 ~~~~ 689 (693)
.+-|
T Consensus 282 alGf 285 (493)
T KOG2581|consen 282 ALGF 285 (493)
T ss_pred hhhH
Confidence 5544
No 362
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=89.21 E-value=5.7 Score=41.50 Aligned_cols=92 Identities=23% Similarity=0.134 Sum_probs=58.4
Q ss_pred HHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChHHHHHH--HhCCHHHHHHHHHHHHHhcCCCcHHHHHH
Q 005499 385 LRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNADLFFDL--EQRNLSTALRYAKQYIDATGGSVLKGWKL 462 (693)
Q Consensus 385 ~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l--~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 462 (693)
...++..+..+|.. +.|+.. ..|++..+.+ +.|+++.|.+..++ .+++ ..|..
T Consensus 298 ~~~i~~fL~~~G~~-----------e~AL~~--------~~D~~~rFeLAl~lg~L~~A~~~a~~-----~~~~-~~W~~ 352 (443)
T PF04053_consen 298 GQSIARFLEKKGYP-----------ELALQF--------VTDPDHRFELALQLGNLDIALEIAKE-----LDDP-EKWKQ 352 (443)
T ss_dssp HHHHHHHHHHTT-H-----------HHHHHH--------SS-HHHHHHHHHHCT-HHHHHHHCCC-----CSTH-HHHHH
T ss_pred HHHHHHHHHHCCCH-----------HHHHhh--------cCChHHHhHHHHhcCCHHHHHHHHHh-----cCcH-HHHHH
Confidence 44444455556666 555543 2345566666 78888888776543 2355 88999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhH
Q 005499 463 LALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMD 511 (693)
Q Consensus 463 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~ 511 (693)
+|.....+|+++-|..+|.++-+ +..+..+|...|+.+.
T Consensus 353 Lg~~AL~~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~ 391 (443)
T PF04053_consen 353 LGDEALRQGNIELAEECYQKAKD----------FSGLLLLYSSTGDREK 391 (443)
T ss_dssp HHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHH
T ss_pred HHHHHHHcCCHHHHHHHHHhhcC----------ccccHHHHHHhCCHHH
Confidence 99999999999999999988422 2345666777777543
No 363
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=89.17 E-value=2.3 Score=48.87 Aligned_cols=170 Identities=16% Similarity=0.037 Sum_probs=121.2
Q ss_pred HHHHHHHHHHcCChHHHHH------HHHH-HHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCC
Q 005499 460 WKLLALVLSAQQRFSEAEV------VTDA-ALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGP 532 (693)
Q Consensus 460 ~~~la~~~~~~g~~~~A~~------~~~~-al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 532 (693)
....+......|.+.+|.+ .+.. .-..+| +....+..++.++...|++++|+..-.++.-+....
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~--~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~------ 1006 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHP--EVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERV------ 1006 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcch--hHHHHHHHHHHHHhhhcchHHHHHhcccceeeechh------
Confidence 3445556666777777777 4442 223466 678889999999999999999999887776443111
Q ss_pred cccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCChHHHHHHH
Q 005499 533 LRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKAREL--------KAYSAEMLHTEGVMHEGCGQTHEALRAY 604 (693)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 604 (693)
...+.+.....+.+++...+..++...|...+.++..+ .|.-.....+++.++...++++.|+.+.
T Consensus 1007 ------~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~l 1080 (1236)
T KOG1839|consen 1007 ------LGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYL 1080 (1236)
T ss_pred ------ccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHH
Confidence 01333666788889999899999999999999888764 4555667788999999999999999999
Q ss_pred HHHHhhCC-----C---ChhHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q 005499 605 INALLIEP-----S---YVPCKVLVGSLFSKLGPKALPVARSLLSDALR 645 (693)
Q Consensus 605 ~~al~~~p-----~---~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~ 645 (693)
+.|+...- . ....+..++.++..++++. .|....+....
T Consensus 1081 e~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr--~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1081 ESALAKNKKVLGPKELETALSYHALARLFESMKDFR--NALEHEKVTYG 1127 (1236)
T ss_pred HHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHH--HHHHHHhhHHH
Confidence 99998542 1 2345556666666666665 55555544443
No 364
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=89.14 E-value=22 Score=34.25 Aligned_cols=40 Identities=15% Similarity=-0.119 Sum_probs=26.0
Q ss_pred HHHHHHhhcCCCCCcHHHHHHHHHHHHHCCCcHHHHHHHHH
Q 005499 291 LAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDAALNLLRK 331 (693)
Q Consensus 291 a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 331 (693)
|+.+- +.-.....++..+..+|..+++.|++.+|...|-.
T Consensus 76 ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 76 AIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp HHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred HHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 44444 23334456888999999999999999998877644
No 365
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=89.10 E-value=3.1 Score=39.37 Aligned_cols=74 Identities=22% Similarity=-0.004 Sum_probs=63.3
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 005499 584 LHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGL 659 (693)
Q Consensus 584 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~ 659 (693)
..++=..+...++++.|..+-++.+.++|.++.-+.-.|.+|.++|.+. -|+..++..++..|+++.+-.....
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~--vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYH--VALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCch--hhHHHHHHHHHhCCCchHHHHHHHH
Confidence 3445567788899999999999999999999999999999999999999 9999999999999998876554433
No 366
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.10 E-value=31 Score=35.87 Aligned_cols=65 Identities=15% Similarity=0.105 Sum_probs=38.0
Q ss_pred CcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhh
Q 005499 304 LRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLAAKICSEDCHLAAEGIQYARTALSNA 373 (693)
Q Consensus 304 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~ 373 (693)
++...++.++.||... ..++=..+.+++++ .+-++...-..++..+-+ .+.. .+..+|.+++...
T Consensus 97 e~kmal~el~q~y~en-~n~~l~~lWer~ve--~dfnDvv~~ReLa~~yEk-ik~s-k~a~~f~Ka~yrf 161 (711)
T COG1747 97 ESKMALLELLQCYKEN-GNEQLYSLWERLVE--YDFNDVVIGRELADKYEK-IKKS-KAAEFFGKALYRF 161 (711)
T ss_pred chHHHHHHHHHHHHhc-CchhhHHHHHHHHH--hcchhHHHHHHHHHHHHH-hchh-hHHHHHHHHHHHh
Confidence 3455667777777766 44555666666666 345555555555544433 5555 6666666666543
No 367
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.89 E-value=28 Score=35.14 Aligned_cols=144 Identities=13% Similarity=0.148 Sum_probs=101.4
Q ss_pred hcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhc-ccCChHHHhHHHHHHHHHHHHHHhcCCCChHHHHH
Q 005499 354 EDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAK-VSSSDYERSRLQSEALKSLDGASTFENNNADLFFD 432 (693)
Q Consensus 354 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~-~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 432 (693)
..+.+..+++..-.+.+...| +. ..+|+..-.++...-. ....+.++....++-+.....+++.+|+...+|..
T Consensus 40 ~~~~yd~e~l~lt~~ll~~np---e~--~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~h 114 (421)
T KOG0529|consen 40 EAKEYDEEHLELTSELLEKNP---EF--YTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHH 114 (421)
T ss_pred hccccchHHHHHHHHHHhhCc---hh--hhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHH
Confidence 344555577777777777666 44 3444433333322222 23455666667789999999999999999999988
Q ss_pred H-------HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC----ChHHHHHHHHHHHhhcCCCCchHHHHHHHH
Q 005499 433 L-------EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQ----RFSEAEVVTDAALDETTKWEQGPILRLKAK 501 (693)
Q Consensus 433 l-------~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 501 (693)
. ..-++..-+..++++++.+|.+. .+|...=.+..... ...+=+++..+++..++ .+..+|.....
T Consensus 115 R~w~L~~~p~~~~~~EL~lcek~L~~D~RNf-h~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nf--SNYsaWhyRs~ 191 (421)
T KOG0529|consen 115 RKWVLQKNPHSDWNTELQLCEKALKQDPRNF-HAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNF--SNYSAWHYRSL 191 (421)
T ss_pred HHHHHHhCCCchHHHHHHHHHHHHhcCcccc-cchHHHHHHHHHHhcccccchhHHHHHHHHHhccc--hhhhHHHHHHH
Confidence 8 23357889999999999999998 88876555544333 24566788889999888 78888888777
Q ss_pred HHHH
Q 005499 502 LKIA 505 (693)
Q Consensus 502 ~~~~ 505 (693)
++..
T Consensus 192 lL~~ 195 (421)
T KOG0529|consen 192 LLST 195 (421)
T ss_pred HHHH
Confidence 7663
No 368
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=88.75 E-value=0.72 Score=27.86 Aligned_cols=30 Identities=17% Similarity=0.148 Sum_probs=25.0
Q ss_pred hhHHHHhhcCCchHHHHHHHHHhcccCCCC
Q 005499 179 LLPELWKQVGCDHDALAAYRRAVLSQWNLD 208 (693)
Q Consensus 179 ~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 208 (693)
.+...|.+.|++++|...|+++.+.+..||
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 5 TLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 345679999999999999999998776554
No 369
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=88.72 E-value=0.81 Score=28.65 Aligned_cols=31 Identities=16% Similarity=0.332 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhccc
Q 005499 652 KAWYYLGLVHKDDGRIADAADCFQAASMLEE 682 (693)
Q Consensus 652 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 682 (693)
+++..||.+-...++|++|++-|++++++..
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~ 32 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQE 32 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999998653
No 370
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=88.60 E-value=1.7 Score=26.84 Aligned_cols=30 Identities=17% Similarity=0.079 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHCCChHHHHHH--HHHHHhhCC
Q 005499 583 MLHTEGVMHEGCGQTHEALRA--YINALLIEP 612 (693)
Q Consensus 583 ~~~~lg~~~~~~g~~~~A~~~--~~~al~~~p 612 (693)
.++.+|..+..+|++++|+.. |.-+..++|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 455556666666666666666 324444444
No 371
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=88.55 E-value=26 Score=34.33 Aligned_cols=173 Identities=14% Similarity=-0.024 Sum_probs=108.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhcCCC----CchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccc
Q 005499 461 KLLALVLSAQQRFSEAEVVTDAALDETTKW----EQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCL 536 (693)
Q Consensus 461 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 536 (693)
..+..+|...++|.+|+......+..-.+. .-.+++..-..+|....+..+|...+..+-.....-
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~Anai---------- 201 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAI---------- 201 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhccc----------
Confidence 457889999999999999988877643221 234556667788888889998888777665443111
Q ss_pred cchhhhcccH--HHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC---CCHHH---HHHHHHHHHHCCChHHHHHH--HHH
Q 005499 537 SQIEDDKVNE--FQVWHGLANLYSGLSHWKDVAICMGKARELKA---YSAEM---LHTEGVMHEGCGQTHEALRA--YIN 606 (693)
Q Consensus 537 ~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p---~~~~~---~~~lg~~~~~~g~~~~A~~~--~~~ 606 (693)
.. |.. ...=..=|..+....+|..|..+|-++++-.. ++..+ +-.+-.+-...+..++--.. -+.
T Consensus 202 ----Yc-pPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~ 276 (411)
T KOG1463|consen 202 ----YC-PPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKL 276 (411)
T ss_pred ----cc-CHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHH
Confidence 11 222 22223335667777899999999999987532 22333 22333444455666654433 345
Q ss_pred HHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCC
Q 005499 607 ALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEP 648 (693)
Q Consensus 607 al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p 648 (693)
+++....+.+++...+..+.+..-.+++.|+..|..-+..+|
T Consensus 277 ~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 277 ALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 666666777888888887765432223377777776665554
No 372
>PRK11619 lytic murein transglycosylase; Provisional
Probab=88.25 E-value=47 Score=36.89 Aligned_cols=357 Identities=9% Similarity=-0.059 Sum_probs=177.3
Q ss_pred hcCCCCcHH---HHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCC
Q 005499 265 LGKIKWDPA---VMEHLTYALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPND 341 (693)
Q Consensus 265 ~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~ 341 (693)
+..+|+.|. +....-..+.+.++....+..+. ..|.+.......+......|+-++|....+++-..+ ...
T Consensus 89 l~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~----~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g--~~~ 162 (644)
T PRK11619 89 IRANPTLPPARSLQSRFVNELARREDWRGLLAFSP----EKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG--KSL 162 (644)
T ss_pred HHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--CCC
Confidence 344454443 33333334556677776666332 235677777888889999999998988888876533 222
Q ss_pred HHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCChHHHhHHH---HHHHHHHH
Q 005499 342 LMALLLAAKICSEDCHLA-AEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQ---SEALKSLD 417 (693)
Q Consensus 342 ~~~~~~~a~~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~---~~A~~~~~ 417 (693)
+..+--+-....+.+... +.-..-+..++.... . ..+..+...+-...... -..+.... ......+.
T Consensus 163 p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~---~---~lA~~l~~~l~~~~~~~---a~a~~al~~~p~~~~~~~~ 233 (644)
T PRK11619 163 PNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGN---T---GLVTYLAKQLPADYQTI---ASALIKLQNDPNTVETFAR 233 (644)
T ss_pred ChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC---H---HHHHHHHHhcChhHHHH---HHHHHHHHHCHHHHHHHhh
Confidence 333332222333233322 122222222222111 0 11111111000000000 00000000 11111111
Q ss_pred HHHhcCCCC--hH-HHHHH---HhCCHHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhcC
Q 005499 418 GASTFENNN--AD-LFFDL---EQRNLSTALRYAKQYIDATGGSV---LKGWKLLALVLSAQQRFSEAEVVTDAALDETT 488 (693)
Q Consensus 418 ~al~~~p~~--~~-~~~~l---~~~~~~~A~~~~~~al~~~p~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 488 (693)
. ..|.. .. ..+.+ ...+.+.|...+.+.....+-+. ..++..+|.-....+...+|...+..+.....
T Consensus 234 -~--~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~ 310 (644)
T PRK11619 234 -T--TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ 310 (644)
T ss_pred -c--cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC
Confidence 1 11111 11 12222 55667778887776544443222 12334444333333336677777776554332
Q ss_pred CCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHH
Q 005499 489 KWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAI 568 (693)
Q Consensus 489 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 568 (693)
+...+.....+....++++.....+..+-... .......+-+|..+...|+.++|..
T Consensus 311 ---~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~--------------------~~~~rw~YW~aRa~~~~g~~~~A~~ 367 (644)
T PRK11619 311 ---STSLLERRVRMALGTGDRRGLNTWLARLPMEA--------------------KEKDEWRYWQADLLLEQGRKAEAEE 367 (644)
T ss_pred ---CcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh--------------------ccCHhhHHHHHHHHHHcCCHHHHHH
Confidence 33445555556667888877766666643221 1235677778888888899999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHCCCh-H--HH-HHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 005499 569 CMGKARELKAYSAEMLHTEGVMHEGCGQT-H--EA-LRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDAL 644 (693)
Q Consensus 569 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~-~--~A-~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al 644 (693)
.|+++.. +.+ .|-.++. .+.|.. . .. ...-...+ +. ......+..+...|+.. .|...+..++
T Consensus 368 ~~~~~a~--~~~--fYG~LAa--~~Lg~~~~~~~~~~~~~~~~~---~~--~~~~~ra~~L~~~g~~~--~a~~ew~~~~ 434 (644)
T PRK11619 368 ILRQLMQ--QRG--FYPMVAA--QRLGEEYPLKIDKAPKPDSAL---TQ--GPEMARVRELMYWNMDN--TARSEWANLV 434 (644)
T ss_pred HHHHHhc--CCC--cHHHHHH--HHcCCCCCCCCCCCCchhhhh---cc--ChHHHHHHHHHHCCCHH--HHHHHHHHHH
Confidence 9888744 222 2222221 122321 0 00 00000011 11 12455667778889888 8888888777
Q ss_pred hhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005499 645 RIEPTNRKAWYYLGLVHKDDGRIADAADCFQAA 677 (693)
Q Consensus 645 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 677 (693)
.. .++.....++.+....|.++.++....++
T Consensus 435 ~~--~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 435 AS--RSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred hc--CCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 64 34566777888888888888887766554
No 373
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=88.21 E-value=35 Score=35.46 Aligned_cols=214 Identities=10% Similarity=-0.028 Sum_probs=121.0
Q ss_pred HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHH
Q 005499 434 EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAI 513 (693)
Q Consensus 434 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 513 (693)
......-....+.+++..... . .+++.++.+|... ..++-..++++..+.+- ++...-..++..|.. ++...+.
T Consensus 78 ~n~k~~~veh~c~~~l~~~e~-k-mal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReLa~~yEk-ik~sk~a 151 (711)
T COG1747 78 DNHKNQIVEHLCTRVLEYGES-K-MALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRELADKYEK-IKKSKAA 151 (711)
T ss_pred cchHHHHHHHHHHHHHHhcch-H-HHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHHHHHHHH-hchhhHH
Confidence 333444555677777776543 3 7888888888887 56677788888888777 677777777877776 7888888
Q ss_pred HHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-CCHHHHHH-HHHHH
Q 005499 514 ETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKA-YSAEMLHT-EGVMH 591 (693)
Q Consensus 514 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~-lg~~~ 591 (693)
..|.+++...-... ....--++|-.+-. .--.+.+.-+....+.-+... ....+.+. .-.-|
T Consensus 152 ~~f~Ka~yrfI~~~--------------q~~~i~evWeKL~~--~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 152 EFFGKALYRFIPRR--------------QNAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHHHHHhcchh--------------hhhhHHHHHHHHHH--hccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 89988887651110 00111223333221 112334444444444333222 12223222 22445
Q ss_pred HHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhC-CCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHH
Q 005499 592 EGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLG-PKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADA 670 (693)
Q Consensus 592 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 670 (693)
....++++|+......++.+..+..+.-++..-+...- ... .-.++ + ....+-..-.++.++
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~--~~e~y----l-----------~~s~i~~~~rnf~~~ 278 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHS--QLEEY----L-----------KISNISQSGRNFFEA 278 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccch--hHHHH----H-----------HhcchhhccccHHHH
Confidence 56677888888888888888777777666655443321 111 11111 1 122222223456667
Q ss_pred HHHHHHHHhcccCCCC
Q 005499 671 ADCFQAASMLEESDPI 686 (693)
Q Consensus 671 ~~~~~~al~l~p~~~~ 686 (693)
+.-|++.+..+..|-+
T Consensus 279 l~dFek~m~f~eGnFV 294 (711)
T COG1747 279 LNDFEKLMHFDEGNFV 294 (711)
T ss_pred HHHHHHHheeccCceE
Confidence 7777777766655543
No 374
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=87.75 E-value=1.3 Score=26.62 Aligned_cols=33 Identities=30% Similarity=0.446 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCC
Q 005499 307 DRWNALALCYSAIGQNDAALNLLRKSLHKHERP 339 (693)
Q Consensus 307 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p 339 (693)
.+|..+..++.+.|+++.|..+|+.+.+.+..|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356777888888888888888888887755443
No 375
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=87.39 E-value=3.1 Score=41.52 Aligned_cols=91 Identities=15% Similarity=0.006 Sum_probs=74.6
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCC-------------C-----HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q 005499 551 HGLANLYSGLSHWKDVAICMGKARELKAY-------------S-----AEMLHTEGVMHEGCGQTHEALRAYINALLIEP 612 (693)
Q Consensus 551 ~~la~~~~~~~~~~~A~~~~~~al~~~p~-------------~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 612 (693)
..=|..++++++|..|.--|..++++..+ + ..+-..+..||.+.++.+-|+..-.+.+.++|
T Consensus 180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP 259 (569)
T PF15015_consen 180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP 259 (569)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc
Confidence 34467788999999999999999986321 1 12345688999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 005499 613 SYVPCKVLVGSLFSKLGPKALPVARSLLSDA 643 (693)
Q Consensus 613 ~~~~~~~~la~~~~~~g~~~l~~A~~~~~~a 643 (693)
.+..-+..-|.++..+.+|. +|-+.+.-+
T Consensus 260 ~~frnHLrqAavfR~LeRy~--eAarSamia 288 (569)
T PF15015_consen 260 SYFRNHLRQAAVFRRLERYS--EAARSAMIA 288 (569)
T ss_pred chhhHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 99999999999999999998 887766544
No 376
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.77 E-value=0.81 Score=29.79 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=22.9
Q ss_pred HHHHHHHHHCCCcHHHHHHHHHHhhc
Q 005499 310 NALALCYSAIGQNDAALNLLRKSLHK 335 (693)
Q Consensus 310 ~~la~~~~~~g~~~~A~~~~~~~l~~ 335 (693)
+.+|..|...|+.+.|..++++++..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 57899999999999999999999863
No 377
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=86.57 E-value=1.7 Score=27.24 Aligned_cols=35 Identities=11% Similarity=0.172 Sum_probs=30.1
Q ss_pred HHHHHHHHHhHhhCChHHHHHHHHHHHHHHHHhhh
Q 005499 123 EAIYLKAKSLQKLGRLTEAANECKSVLDAVERIFQ 157 (693)
Q Consensus 123 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 157 (693)
+++..+|..-...++|++|+.-|.+++.+..+..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~ 36 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLP 36 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 46788899999999999999999999998776543
No 378
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=86.51 E-value=3.1 Score=39.94 Aligned_cols=65 Identities=11% Similarity=0.132 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhh
Q 005499 580 SAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRI 646 (693)
Q Consensus 580 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~ 646 (693)
...++..++..+...|+++.++..+++.+..+|-+...|..+-..|...|+.. .|+..|++.-+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~--~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQS--AAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCch--HHHHHHHHHHHH
Confidence 35677788888888888888888888888888888888888888888888888 888888877664
No 379
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=86.38 E-value=4.3 Score=38.99 Aligned_cols=64 Identities=19% Similarity=0.105 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 005499 458 KGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALV 523 (693)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 523 (693)
.++..++..+...|+++.+...+++.+..+| -+...|..+...+...|+...|+..|+++-+..
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp--~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~ 217 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDP--YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTL 217 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Confidence 7788899999999999999999999999999 788999999999999999999999999987753
No 380
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=85.46 E-value=38 Score=33.01 Aligned_cols=103 Identities=21% Similarity=0.084 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHH---HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 005499 410 SEALKSLDGASTFENNNADLFFDL---EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDE 486 (693)
Q Consensus 410 ~~A~~~~~~al~~~p~~~~~~~~l---~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 486 (693)
.+-+..-..+++++|....++.-+ ..--..+|.+.++++++.... .+.........|...+|. .+.
T Consensus 201 ~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~Ti~~AE~l~k~ALka~e~-----~yr~sqq~qh~~~~~da~------~rR 269 (556)
T KOG3807|consen 201 PARIKAAYQALEINNECATAYVLLAEEEATTIVDAERLFKQALKAGET-----IYRQSQQCQHQSPQHEAQ------LRR 269 (556)
T ss_pred HHHHHHHHHHHhcCchhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHHH-----HHhhHHHHhhhccchhhh------hhc
Confidence 666777777888899888887777 555677888888888875321 122222222222222221 122
Q ss_pred cCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q 005499 487 TTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQ 524 (693)
Q Consensus 487 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 524 (693)
+.. -...+-..++.+..++|+..+|++.++...+..|
T Consensus 270 Dtn-vl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 270 DTN-VLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred ccc-hhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 220 1233445778888888888888888887776554
No 381
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=84.84 E-value=6.1 Score=40.30 Aligned_cols=136 Identities=16% Similarity=0.172 Sum_probs=81.9
Q ss_pred cccchhhhhcccCCcCHHHHHHHhhhccCCC-------HHHHHHHH--------HHHHhhcCCHHHHHhhhccCCcchh-
Q 005499 23 ACMKAAEVEAKLDEGNIQEAESSLREGLSLN-------FEEARALL--------GRLEYQRGNVEGALRVFDGIDLHAA- 86 (693)
Q Consensus 23 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-------~~~a~~~l--------g~~~~~~g~~~~A~~~~~~~~~~~~- 86 (693)
+..++.-=.+..++.++.+-....++..+|. ....+.+| .+++.-.|||..|++.++-++.+..
T Consensus 75 ~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~ 154 (404)
T PF10255_consen 75 VYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKG 154 (404)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccch
Confidence 3344444455566666777666666644222 22334433 3577789999999999998865421
Q ss_pred -hhhccccchhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHhHhhCChHHHHHHHHHHHHHHHHhhhcCCCChhh
Q 005499 87 -IQRLQPSFSEKSASKKCRSRSDSHVSVSQHAASLVLEAIYLKAKSLQKLGRLTEAANECKSVLDAVERIFQQGIPDAQV 165 (693)
Q Consensus 87 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 165 (693)
..+..+ -....+|..|-+|..+++|.+|++.|..++--..+...........
T Consensus 155 l~~~V~~---------------------------~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~~~q 207 (404)
T PF10255_consen 155 LYTKVPA---------------------------CHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQRSYQ 207 (404)
T ss_pred hhccCcc---------------------------hheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccch
Confidence 111100 1134678899999999999999999999887665543111112222
Q ss_pred hhhHHHHHHHHHhhhHHHHh
Q 005499 166 DNRLQETVSRAVELLPELWK 185 (693)
Q Consensus 166 ~~~~~~~~~~a~~~l~~~~~ 185 (693)
.+.+....++-+..++.|..
T Consensus 208 ~d~i~K~~eqMyaLlAic~~ 227 (404)
T PF10255_consen 208 YDQINKKNEQMYALLAICLS 227 (404)
T ss_pred hhHHHhHHHHHHHHHHHHHH
Confidence 23455555566666555543
No 382
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=84.40 E-value=3.2 Score=40.59 Aligned_cols=62 Identities=19% Similarity=0.222 Sum_probs=53.5
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHH
Q 005499 566 VAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSK 627 (693)
Q Consensus 566 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 627 (693)
|..+|.+|..+.|.+...++.+|.++...|+.=.|+-+|-+++......+.+..+|..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999997765567889999988888
No 383
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=83.96 E-value=44 Score=32.56 Aligned_cols=30 Identities=13% Similarity=0.018 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhhCC
Q 005499 549 VWHGLANLYSGLSHWKDVAICMGKARELKA 578 (693)
Q Consensus 549 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p 578 (693)
+-..++.+..++|+..+|.+.++...+..|
T Consensus 277 IKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 277 IKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 334566677777777777777777666555
No 384
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=83.71 E-value=4.9 Score=29.88 Aligned_cols=60 Identities=13% Similarity=0.107 Sum_probs=43.8
Q ss_pred HHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 005499 498 LKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKAR 574 (693)
Q Consensus 498 ~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 574 (693)
..|.-++...+.++|+..++++++..++. +.-..++-.+..+|...|++.+++.+--+=+
T Consensus 11 e~GlkLY~~~~~~~Al~~W~~aL~k~~~~-----------------~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 11 EKGLKLYHQNETQQALQKWRKALEKITDR-----------------EDRFRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhhcCCh-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556778889999999999887544 3446777778888999999998887755433
No 385
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=83.10 E-value=0.55 Score=30.55 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=19.6
Q ss_pred chhhhhcccCCcCHHHHHHHhhhcc
Q 005499 26 KAAEVEAKLDEGNIQEAESSLREGL 50 (693)
Q Consensus 26 ~~~~~~~~~~~g~~~~A~~~~~~~l 50 (693)
++..+++|+..|+.+.|...+++++
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHH
Confidence 4667778888888888888888877
No 386
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=82.72 E-value=66 Score=33.61 Aligned_cols=92 Identities=12% Similarity=0.026 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCC-----ChhHHHHHHHHH--HHhCCCChHHHHHHHHHHHhhCCCCHH
Q 005499 582 EMLHTEGVMHEGCGQTHEALRAYINALLI--EPS-----YVPCKVLVGSLF--SKLGPKALPVARSLLSDALRIEPTNRK 652 (693)
Q Consensus 582 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~-----~~~~~~~la~~~--~~~g~~~l~~A~~~~~~al~~~p~~~~ 652 (693)
.+....+.++...|.+.+|...+-+.... ..+ ..-.+-.+|.++ ....... .-..-+++ ..
T Consensus 301 R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~~--~~~~r~RK--------~a 370 (414)
T PF12739_consen 301 RCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRPS--PGLTRFRK--------YA 370 (414)
T ss_pred HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCCC--ccchhhHH--------HH
Confidence 45566777788888888877766666554 212 223344455555 2221111 00000111 11
Q ss_pred HHH-HHHHHHHHcCChHHHHHHHHHHHhcccC
Q 005499 653 AWY-YLGLVHKDDGRIADAADCFQAASMLEES 683 (693)
Q Consensus 653 ~~~-~lg~~~~~~g~~~~A~~~~~~al~l~p~ 683 (693)
.|. .-|.-|...|+...|..+|.+|+.....
T Consensus 371 f~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 371 FHMVLAGHRYSKAGQKKHALRCYKQALQVYEG 402 (414)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 222 3478899999999999999999987654
No 387
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=82.31 E-value=8.8 Score=38.52 Aligned_cols=55 Identities=11% Similarity=0.128 Sum_probs=41.6
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 005499 619 VLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQ 675 (693)
Q Consensus 619 ~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 675 (693)
..|..||+++++.+ .|+....+.+-++|..+.-+...+.++..+.+|.+|...+-
T Consensus 232 tklv~CYL~~rkpd--lALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSam 286 (569)
T PF15015_consen 232 TKLVTCYLRMRKPD--LALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAM 286 (569)
T ss_pred HHHHHhhhhcCCCc--hHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888 88888888888888877777777777777777777665443
No 388
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=82.09 E-value=44 Score=32.82 Aligned_cols=93 Identities=13% Similarity=0.117 Sum_probs=54.1
Q ss_pred ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCChhHHHHHHHHHHHhCCCChHHHHHH
Q 005499 562 HWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLI--EPSYVPCKVLVGSLFSKLGPKALPVARSL 639 (693)
Q Consensus 562 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~l~~A~~~ 639 (693)
+|..-..+|+-...+.| +|.+-.|.+....+..-.+.++...+..... -..+...+...|.++.++|+.+ +|...
T Consensus 311 DW~~I~aLYdaL~~~ap-SPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~--eAr~a 387 (415)
T COG4941 311 DWPAIDALYDALEQAAP-SPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVE--EARAA 387 (415)
T ss_pred ChHHHHHHHHHHHHhCC-CCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChH--HHHHH
Confidence 56555556655555554 3444445555554444455555555544432 1233445666777777788777 88888
Q ss_pred HHHHHhhCCCCHHHHHHH
Q 005499 640 LSDALRIEPTNRKAWYYL 657 (693)
Q Consensus 640 ~~~al~~~p~~~~~~~~l 657 (693)
|++++.+.++..+..+..
T Consensus 388 ydrAi~La~~~aer~~l~ 405 (415)
T COG4941 388 YDRAIALARNAAERAFLR 405 (415)
T ss_pred HHHHHHhcCChHHHHHHH
Confidence 888877777665544433
No 389
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=81.27 E-value=3.9 Score=39.97 Aligned_cols=62 Identities=21% Similarity=0.052 Sum_probs=53.0
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 005499 600 ALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKD 663 (693)
Q Consensus 600 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 663 (693)
|..+|.+|+.+.|++...++.||.+....|+.- .|+-+|-+++......+.+..+|..++..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l--~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDL--DAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HH--HHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchH--HHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 678999999999999999999999999999987 99999999998665568899999888887
No 390
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=81.12 E-value=2.2 Score=24.86 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHhh
Q 005499 308 RWNALALCYSAIGQNDAALNLLRKSLH 334 (693)
Q Consensus 308 ~~~~la~~~~~~g~~~~A~~~~~~~l~ 334 (693)
+|..+..+|.+.|++++|..+|+++.+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 355666677777777777777777655
No 391
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=81.02 E-value=2 Score=24.98 Aligned_cols=27 Identities=15% Similarity=0.103 Sum_probs=22.6
Q ss_pred hhhHHHHhhcCCchHHHHHHHHHhccc
Q 005499 178 ELLPELWKQVGCDHDALAAYRRAVLSQ 204 (693)
Q Consensus 178 ~~l~~~~~~~g~~~~A~~~~~~~l~~~ 204 (693)
..+...|.+.|++++|...|+++.+.+
T Consensus 4 ~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 4 NSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred HHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 345678999999999999999998753
No 392
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=80.59 E-value=55 Score=31.32 Aligned_cols=171 Identities=15% Similarity=0.059 Sum_probs=95.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhcCCC----CchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccc
Q 005499 461 KLLALVLSAQQRFSEAEVVTDAALDETTKW----EQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCL 536 (693)
Q Consensus 461 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 536 (693)
..++.++.+.|+|.+|+..+...+..-.++ .-..++..-..+|....+..++...+..+-.....-
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~---------- 198 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSA---------- 198 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhcc----------
Confidence 356778899999999999998876542211 345567777788888888888777766655443111
Q ss_pred cchhhhcccHHHHH--HHHHHHHHhCCChHHHHHHHHHHHhhCC---CCHHHHH-----HHHHHHHHCCChHHHHHHHH-
Q 005499 537 SQIEDDKVNEFQVW--HGLANLYSGLSHWKDVAICMGKARELKA---YSAEMLH-----TEGVMHEGCGQTHEALRAYI- 605 (693)
Q Consensus 537 ~~~~~~~~~~~~~~--~~la~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~-----~lg~~~~~~g~~~~A~~~~~- 605 (693)
. -|....+- ..-|...+...+|..|..+|-++++-.. .+..+.. .+..+ ..+..++-...++
T Consensus 199 ----Y-CPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkI--MlN~~~evk~vl~~ 271 (421)
T COG5159 199 ----Y-CPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKI--MLNRREEVKAVLRN 271 (421)
T ss_pred ----C-CCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHH--HHhhHHHHHHHHcc
Confidence 0 13222332 2335667778899999999999887532 2333322 22222 2233333332222
Q ss_pred -HHHh-hCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCC
Q 005499 606 -NALL-IEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEP 648 (693)
Q Consensus 606 -~al~-~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p 648 (693)
..++ .+....+++...+..+....-.++..|+..|..-+..+|
T Consensus 272 K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~ 316 (421)
T COG5159 272 KNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDS 316 (421)
T ss_pred chhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCH
Confidence 2222 233445566666665543222222266666665554443
No 393
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=78.95 E-value=64 Score=31.10 Aligned_cols=53 Identities=17% Similarity=0.120 Sum_probs=26.6
Q ss_pred HHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHH
Q 005499 588 GVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSD 642 (693)
Q Consensus 588 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~ 642 (693)
+..|...|.+.+|+++.+++++++|-+...+..+-.++..+|+.- .+.+.|++
T Consensus 286 a~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~i--s~~khyer 338 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEI--SAIKHYER 338 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccch--hhhhHHHH
Confidence 344444555555555555555555555555555555555555544 44444443
No 394
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=78.91 E-value=22 Score=26.58 Aligned_cols=55 Identities=16% Similarity=0.042 Sum_probs=32.2
Q ss_pred HHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHH---HHHHHCCChHHHHHHHHHHH
Q 005499 554 ANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEG---VMHEGCGQTHEALRAYINAL 608 (693)
Q Consensus 554 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg---~~~~~~g~~~~A~~~~~~al 608 (693)
|.-++..++.++|+..++++++..++.+.-+..+| .++...|+|.+.+.+--.-+
T Consensus 13 GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 13 GLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344666677777777777776666555444433 44566666666665544433
No 395
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=78.70 E-value=5.3 Score=23.39 Aligned_cols=27 Identities=15% Similarity=-0.021 Sum_probs=14.4
Q ss_pred ChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 005499 562 HWKDVAICMGKARELKAYSAEMLHTEG 588 (693)
Q Consensus 562 ~~~~A~~~~~~al~~~p~~~~~~~~lg 588 (693)
+.+.+..+|++++...|.++..|....
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 345555555555555555555554443
No 396
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=78.11 E-value=6.8 Score=37.48 Aligned_cols=82 Identities=11% Similarity=0.125 Sum_probs=51.6
Q ss_pred HHHHHHhhhccCCC-HHHHHHHHHHHHhhcCCHHHHHhhhccCCcchhhhhccccchhhhhhhccCCCCCCCccchhhHH
Q 005499 40 QEAESSLREGLSLN-FEEARALLGRLEYQRGNVEGALRVFDGIDLHAAIQRLQPSFSEKSASKKCRSRSDSHVSVSQHAA 118 (693)
Q Consensus 40 ~~A~~~~~~~l~~~-~~~a~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (693)
..|...|++.-... -......+|..|+..|+|++|+.+|+.+........+.
T Consensus 162 ~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~--------------------------- 214 (247)
T PF11817_consen 162 EKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWW--------------------------- 214 (247)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcH---------------------------
Confidence 34444444433322 23445578999999999999999999872221111111
Q ss_pred HHHHHHHHHHHHHhHhhCChHHHHHHHHHH
Q 005499 119 SLVLEAIYLKAKSLQKLGRLTEAANECKSV 148 (693)
Q Consensus 119 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~ 148 (693)
.+..+..-..-.|+.+.|+.+..+...-++
T Consensus 215 ~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 215 SLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 122355566679999999999888775444
No 397
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=77.97 E-value=4.3 Score=24.23 Aligned_cols=28 Identities=14% Similarity=0.064 Sum_probs=23.0
Q ss_pred hhhHHHHhhcCCchHHHHHHHHHhcccC
Q 005499 178 ELLPELWKQVGCDHDALAAYRRAVLSQW 205 (693)
Q Consensus 178 ~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 205 (693)
..+...+.+.|+++.|...|+.|.+.+.
T Consensus 5 ~~ll~a~~~~g~~~~a~~~~~~M~~~gv 32 (34)
T PF13812_consen 5 NALLRACAKAGDPDAALQLFDEMKEQGV 32 (34)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3445678899999999999999988654
No 398
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=77.17 E-value=19 Score=34.26 Aligned_cols=110 Identities=13% Similarity=0.042 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCC------hhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCH---
Q 005499 581 AEMLHTEGVMHEGCGQTHEALRAYINALLIEPSY------VPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNR--- 651 (693)
Q Consensus 581 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~--- 651 (693)
..+|.++|..|.+.++.+.+.+++.+.++..-.. .-....+|.+|..+.-.+ +.++.....++...+-.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~--e~lE~~~~~iEkGgDWeRrN 192 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVE--ESLEVADDIIEKGGDWERRN 192 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHH--HHHHHHHHHHHhCCCHHhhh
Confidence 5689999999999999999999988877643211 123455666665554444 55666666665443311
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcccCCCCCccccC
Q 005499 652 KAWYYLGLVHKDDGRIADAADCFQAASMLEESDPIESFSSI 692 (693)
Q Consensus 652 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~i 692 (693)
..-...|...+...++.+|-..+...+.-..+..+++|+++
T Consensus 193 RyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~El~sY~~~ 233 (412)
T COG5187 193 RYKVYKGIFKMMRRNFKEAAILLSDILPTFESSELISYSRA 233 (412)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHhccccccccccHHHH
Confidence 11223566667777899999999888888888888888765
No 399
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=76.87 E-value=38 Score=32.53 Aligned_cols=61 Identities=13% Similarity=0.044 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 005499 548 QVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINAL 608 (693)
Q Consensus 548 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 608 (693)
..+...+..|...|.+.+|+++.+++++.+|-+...+..+-.++...|+--.+++.|++.-
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3455567788999999999999999999999999999999999999999888888887653
No 400
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=76.23 E-value=61 Score=29.47 Aligned_cols=88 Identities=15% Similarity=-0.019 Sum_probs=61.0
Q ss_pred CCChHHHHHH-HhCCHHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCC--CchHHHHHH
Q 005499 424 NNNADLFFDL-EQRNLSTALRYAKQYIDATG-GSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKW--EQGPILRLK 499 (693)
Q Consensus 424 p~~~~~~~~l-~~~~~~~A~~~~~~al~~~p-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~l 499 (693)
..+|...+.. .+-.-+.|...|-++-.... +++ +..+.+|..|. ..+.++++.++.++++..+.. -++.++..+
T Consensus 107 S~dP~llYy~Wsr~~d~~A~~~fL~~E~~~~l~t~-elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sL 184 (203)
T PF11207_consen 107 SQDPYLLYYHWSRFGDQEALRRFLQLEGTPELETA-ELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSL 184 (203)
T ss_pred CCCccHHHHHhhccCcHHHHHHHHHHcCCCCCCCH-HHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHH
Confidence 3455555555 44344566666655543322 334 67777777665 678999999999999976531 357899999
Q ss_pred HHHHHHhCChhHHH
Q 005499 500 AKLKIAQALPMDAI 513 (693)
Q Consensus 500 ~~~~~~~g~~~~A~ 513 (693)
+.++..+|+++.|-
T Consensus 185 as~~~~~~~~e~AY 198 (203)
T PF11207_consen 185 ASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHhcchhhhh
Confidence 99999999999874
No 401
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=76.10 E-value=72 Score=30.21 Aligned_cols=58 Identities=14% Similarity=0.184 Sum_probs=31.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhcCCCCC-cHHHHHHHHHHH-HHCCCcHHHHHHHHHHhh
Q 005499 277 HLTYALSLCSQTSILAKQLEEIMPGVFL-RSDRWNALALCY-SAIGQNDAALNLLRKSLH 334 (693)
Q Consensus 277 ~l~~~~~~~g~~~~a~~~~e~~l~~~~~-~~~~~~~la~~~-~~~g~~~~A~~~~~~~l~ 334 (693)
.++......|+|+.+++.+.+++...++ +.+-...+..+| -..|....+...+.....
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 3455666677777777777777655432 223344444444 234555555656555554
No 402
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.06 E-value=47 Score=35.33 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHH
Q 005499 549 VWHGLANLYSGLSHWKDVAICMGKA 573 (693)
Q Consensus 549 ~~~~la~~~~~~~~~~~A~~~~~~a 573 (693)
-|..||.+....+++..|.+++.++
T Consensus 668 Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 668 KWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred HHHHHHHHHhhcccchhHHHHHHhh
Confidence 3444455555555555555554444
No 403
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=75.38 E-value=6.9 Score=22.87 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHH
Q 005499 635 VARSLLSDALRIEPTNRKAWYYLG 658 (693)
Q Consensus 635 ~A~~~~~~al~~~p~~~~~~~~lg 658 (693)
.|...|++++...|.++..|....
T Consensus 5 ~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 5 RARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred HHHHHHHHHHHHCCCChHHHHHHH
Confidence 455555555555555555554443
No 404
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=75.35 E-value=34 Score=32.66 Aligned_cols=61 Identities=13% Similarity=0.062 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHCCChHHHHHHHHHH
Q 005499 547 FQVWHGLANLYSGLSHWKDVAICMGKARELKAYS------AEMLHTEGVMHEGCGQTHEALRAYINA 607 (693)
Q Consensus 547 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~a 607 (693)
..+...+|..|+..|++++|..+|+.+....... ..++..+..|+...|+.+..+...-+.
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4566788999999999999999999886553321 345666777778888877766654443
No 405
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=74.51 E-value=92 Score=30.70 Aligned_cols=25 Identities=12% Similarity=0.003 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHhcCCCChHHHH
Q 005499 407 RLQSEALKSLDGASTFENNNADLFF 431 (693)
Q Consensus 407 ~~~~~A~~~~~~al~~~p~~~~~~~ 431 (693)
.+-++|+..-+-...+-|..++++-
T Consensus 210 ~Lc~EairLgRll~~L~p~EPE~~G 234 (415)
T COG4941 210 DLCDEAIRLGRLLARLLPGEPEALG 234 (415)
T ss_pred hHHHHHHHHHHHHHHHcCCChHHHH
Confidence 3347777777766777777776544
No 406
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=74.06 E-value=53 Score=33.73 Aligned_cols=128 Identities=13% Similarity=-0.101 Sum_probs=70.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHH--HHHH--HHHHHHHCCChHHHHHHHHHHHhhCCC---ChhHHHHHH
Q 005499 550 WHGLANLYSGLSHWKDVAICMGKARELKAYSAE--MLHT--EGVMHEGCGQTHEALRAYINALLIEPS---YVPCKVLVG 622 (693)
Q Consensus 550 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~--lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la 622 (693)
....+.-++..++|..|...+..+...-|.... .+.. .|.-+....++.+|...++..+...-. ..+.+..+.
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~ 213 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELV 213 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHH
Confidence 345566778999999999999999885344333 3333 445556778899999999998775211 122333333
Q ss_pred HHHHHhCCCChHHHHHHHHHHHhhCCCCHHHH--HHHHHHHHHcCChHHHHHHHHHHHhc
Q 005499 623 SLFSKLGPKALPVARSLLSDALRIEPTNRKAW--YYLGLVHKDDGRIADAADCFQAASML 680 (693)
Q Consensus 623 ~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~--~~lg~~~~~~g~~~~A~~~~~~al~l 680 (693)
.+........ .......... ..+....+. +..+.--...|+|+.|+..+=+++++
T Consensus 214 ~~~~~~~~~~--~~~~~~~~~~-~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 214 EVLKALESIL--SALEDKKQRQ-KKLYYALLADLLANAERRAAQGRYDDAVARLYRALEL 270 (379)
T ss_pred HHHHHHHhhc--cchhhhhccc-cccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3322222221 1111111100 001111111 12222233578999999888888875
No 407
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=73.93 E-value=1.8 Score=36.78 Aligned_cols=50 Identities=30% Similarity=0.195 Sum_probs=40.7
Q ss_pred CcccchhhhhcccCCcCHHHHHHHhhhcc--CCCHHHHHHHHHHHHhhcCCH
Q 005499 22 GACMKAAEVEAKLDEGNIQEAESSLREGL--SLNFEEARALLGRLEYQRGNV 71 (693)
Q Consensus 22 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l--~~~~~~a~~~lg~~~~~~g~~ 71 (693)
++...+.+++..+++|++.-|...++.++ +|++.+++.+.++++-+.|.-
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 45667889999999999999999999988 999999999999988876643
No 408
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=70.74 E-value=30 Score=31.74 Aligned_cols=62 Identities=15% Similarity=-0.061 Sum_probs=55.3
Q ss_pred HHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCCh
Q 005499 554 ANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYV 615 (693)
Q Consensus 554 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 615 (693)
..-+.+.++..+|+...+.-++..|.+......+-.++.-.|+|++|..-++-+-++.|++.
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 34566788899999999999999999999988889999999999999999999999998864
No 409
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=70.64 E-value=3.1 Score=40.67 Aligned_cols=110 Identities=15% Similarity=-0.025 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhhCC---CC----------------HHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q 005499 549 VWHGLANLYSGLSHWKDVAICMGKARELKA---YS----------------AEMLHTEGVMHEGCGQTHEALRAYINALL 609 (693)
Q Consensus 549 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p---~~----------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 609 (693)
.....+.-.++.++++.|..-|.+++..-. .+ .....+++.+-...+.+..|+..-..++.
T Consensus 224 ~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~ 303 (372)
T KOG0546|consen 224 KKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALR 303 (372)
T ss_pred hhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccc
Confidence 344567788999999999999988875311 00 11234455566666666666666666666
Q ss_pred hCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 005499 610 IEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLV 660 (693)
Q Consensus 610 ~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~ 660 (693)
.++....+++..+..+....+++ +|++.+..+....|++......+..+
T Consensus 304 ~~~s~tka~~Rr~~~~~~~~~~~--~a~~~~~~a~~~~p~d~~i~~~~~~~ 352 (372)
T KOG0546|consen 304 DERSKTKAHYRRGQAYKLLKNYD--EALEDLKKAKQKAPNDKAIEEELENV 352 (372)
T ss_pred cChhhCcHHHHHHhHHHhhhchh--hhHHHHHHhhccCcchHHHHHHHHHh
Confidence 66666667777777777777766 77777777777777666554444333
No 410
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=70.18 E-value=11 Score=38.60 Aligned_cols=63 Identities=16% Similarity=0.021 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhc--------CCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 005499 459 GWKLLALVLSAQQRFSEAEVVTDAALDET--------TKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALV 523 (693)
Q Consensus 459 ~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 523 (693)
+...+.+++.-.|+|..|++.++.. +.+ |. ....+++..|.+|..+++|.+|++.|..++-.-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~-~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi 194 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPA-CHISTYYYVGFAYLMLRRYADAIRTFSQILLYI 194 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcc-hheehHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888999999999988752 222 21 456678899999999999999999999988654
No 411
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=68.52 E-value=1.5e+02 Score=32.79 Aligned_cols=115 Identities=12% Similarity=0.027 Sum_probs=72.3
Q ss_pred chhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChHH--------H--HHH----HhCCHHHHHHH
Q 005499 379 HLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNADL--------F--FDL----EQRNLSTALRY 444 (693)
Q Consensus 379 ~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~--------~--~~l----~~~~~~~A~~~ 444 (693)
.+.+..-..+-..|....+| +.-++..+.. +.-|+.-.+ . +.+ .-|+-++|+..
T Consensus 198 VL~~d~V~nlmlSyRDvQdY-----------~amirLVe~L-k~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~ 265 (1226)
T KOG4279|consen 198 VLHPDTVSNLMLSYRDVQDY-----------DAMIRLVEDL-KRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNT 265 (1226)
T ss_pred ccCHHHHHHHHhhhccccch-----------HHHHHHHHHH-HhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHH
Confidence 34466666666777777777 5555554433 333422111 1 111 67889999998
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHH---------cCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCC
Q 005499 445 AKQYIDATGGSVLKGWKLLALVLSA---------QQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQAL 508 (693)
Q Consensus 445 ~~~al~~~p~~~~~~~~~la~~~~~---------~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~ 508 (693)
.-.+++.......+.+...|++|-. .+..+.|+++|+++++..| ....-.+++.++...|.
T Consensus 266 ~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP---~~~sGIN~atLL~aaG~ 335 (1226)
T KOG4279|consen 266 VLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEP---LEYSGINLATLLRAAGE 335 (1226)
T ss_pred HHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCc---hhhccccHHHHHHHhhh
Confidence 8888876543332666667777643 3566788999999999988 44445567777766663
No 412
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=68.20 E-value=1.7 Score=46.83 Aligned_cols=98 Identities=24% Similarity=0.208 Sum_probs=0.0
Q ss_pred cccCcccchhhhhcccCCcCHHHHHHHhhhcc----CC-CHHHHHHHHHHHHhhcCCHHHHHhhhccCCcchhhhhcccc
Q 005499 19 CVNGACMKAAEVEAKLDEGNIQEAESSLREGL----SL-NFEEARALLGRLEYQRGNVEGALRVFDGIDLHAAIQRLQPS 93 (693)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l----~~-~~~~a~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 93 (693)
.+..+.-++..+++++..|++..|...+.+.- ++ ...+..++.+.+...+|++++|+..++......+.+...
T Consensus 20 ~~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~-- 97 (536)
T PF04348_consen 20 GEQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQ-- 97 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHH--
Confidence 36778889999999999999999999888755 11 223455677999999999999999998754333322211
Q ss_pred chhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHhHhhCChHHHHHHHH
Q 005499 94 FSEKSASKKCRSRSDSHVSVSQHAASLVLEAIYLKAKSLQKLGRLTEAANECK 146 (693)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~ 146 (693)
...+-.+|.++...|+.-+|...+-
T Consensus 98 ----------------------------~~~~~l~A~a~~~~~~~l~Aa~~~i 122 (536)
T PF04348_consen 98 ----------------------------ARYHQLRAQAYEQQGDPLAAARERI 122 (536)
T ss_dssp -----------------------------------------------------
T ss_pred ----------------------------HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 1334556778888888877776643
No 413
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=67.99 E-value=1.7 Score=46.78 Aligned_cols=114 Identities=18% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH--hhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q 005499 444 YAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAAL--DETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLA 521 (693)
Q Consensus 444 ~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 521 (693)
++.++-...+.........-+..+...|++..|..++.+.- .+.+. .........+.+....|++++|+..+.. ..
T Consensus 11 yL~~A~~a~~~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~-q~~~~~Ll~A~lal~~~~~~~Al~~L~~-~~ 88 (536)
T PF04348_consen 11 YLQQAQQASGEQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPS-QQARYQLLRARLALAQGDPEQALSLLNA-QD 88 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcCcHhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChH-HHHHHHHHHHHHHHhcCCHHHHHHHhcc-CC
Confidence 33444333343321445556778888899999988888765 23332 3445566778888888999999888864 11
Q ss_pred HHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005499 522 LVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARE 575 (693)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 575 (693)
..+-.. ......+...+.++...|++-+|...+-..-.
T Consensus 89 ~~~l~~----------------~~~~~~~~l~A~a~~~~~~~l~Aa~~~i~l~~ 126 (536)
T PF04348_consen 89 LWQLPP----------------EQQARYHQLRAQAYEQQGDPLAAARERIALDP 126 (536)
T ss_dssp ------------------------------------------------------
T ss_pred cccCCH----------------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 111000 12244555677888888888777766544433
No 414
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=67.28 E-value=2.1e+02 Score=31.74 Aligned_cols=243 Identities=14% Similarity=0.016 Sum_probs=117.9
Q ss_pred hHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChHHHHHH-------HhCCHHHHHHHHHHHHHhcC
Q 005499 381 KGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNADLFFDL-------EQRNLSTALRYAKQYIDATG 453 (693)
Q Consensus 381 ~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-------~~~~~~~A~~~~~~al~~~p 453 (693)
..-+++.+|.++...|+- ..+++...++...+.. +.+.. ..|-- -.+.|++.-+.--
T Consensus 396 EGGalyAlGLIhA~hG~~-------------~~~yL~~~Lk~~~~e~-v~hG~cLGlGLa~mGSa--~~eiYe~lKevLy 459 (929)
T KOG2062|consen 396 EGGALYALGLIHANHGRG-------------ITDYLLQQLKTAENEV-VRHGACLGLGLAGMGSA--NEEIYEKLKEVLY 459 (929)
T ss_pred ccchhhhhhccccCcCcc-------------HHHHHHHHHHhccchh-hhhhhhhhccchhcccc--cHHHHHHHHHHHh
Confidence 367788888888887754 6677777665444322 22222 22221 1223333322211
Q ss_pred CC-c---HHHHHHHHHHHHHcCChHHHHH-HHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhh
Q 005499 454 GS-V---LKGWKLLALVLSAQQRFSEAEV-VTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRK 528 (693)
Q Consensus 454 ~~-~---~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 528 (693)
.+ . ..+-+.+|.+.....+- +|++ ++.-+-+... +...--...|..+...|+-++|-.+.++++... ++
T Consensus 460 ~D~AvsGEAAgi~MGl~mlGt~~~-eaiedm~~Ya~ETQH--eki~RGl~vGiaL~~ygrqe~Ad~lI~el~~dk--dp- 533 (929)
T KOG2062|consen 460 NDSAVSGEAAGIAMGLLMLGTANQ-EAIEDMLTYAQETQH--EKIIRGLAVGIALVVYGRQEDADPLIKELLRDK--DP- 533 (929)
T ss_pred ccchhhhhHHHHhhhhHhhCcCcH-HHHHHHHHHhhhhhH--HHHHHHHHHhHHHHHhhhhhhhHHHHHHHhcCC--ch-
Confidence 11 1 02234455544444333 3333 3322222211 222223345566777788888888877776532 11
Q ss_pred hcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHH--HHHHHHHHHHHCCChHHHHHHHHH
Q 005499 529 SFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAE--MLHTEGVMHEGCGQTHEALRAYIN 606 (693)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~lg~~~~~~g~~~~A~~~~~~ 606 (693)
.....-.+.++..|...|+...-..++.-++.--.++.. +-..+|.+++ .+++......+-
T Consensus 534 ---------------ilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~--~dp~~~~s~V~l 596 (929)
T KOG2062|consen 534 ---------------ILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLF--RDPEQLPSTVSL 596 (929)
T ss_pred ---------------hhhhhhHHHHHHHHhccCchhhHHHhhcccccccchHHHHHHHHHheeeEe--cChhhchHHHHH
Confidence 112345667788888888776555555444432222322 2333443333 345544444433
Q ss_pred HHhhCCCCh--hHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCC
Q 005499 607 ALLIEPSYV--PCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTN---RKAWYYLGLVHKDDGR 666 (693)
Q Consensus 607 al~~~p~~~--~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~ 666 (693)
..+....+. -+-..||.++.-.|.. +|+.+++.... +|.+ ..++..+|.+..++.+
T Consensus 597 Lses~N~HVRyGaA~ALGIaCAGtG~~---eAi~lLepl~~-D~~~fVRQgAlIa~amIm~Q~t~ 657 (929)
T KOG2062|consen 597 LSESYNPHVRYGAAMALGIACAGTGLK---EAINLLEPLTS-DPVDFVRQGALIALAMIMIQQTE 657 (929)
T ss_pred HhhhcChhhhhhHHHHHhhhhcCCCcH---HHHHHHhhhhc-ChHHHHHHHHHHHHHHHHHhccc
Confidence 333222222 2334456666556643 57777766554 5543 2355566666665543
No 415
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=67.15 E-value=2.6e+02 Score=32.88 Aligned_cols=25 Identities=8% Similarity=-0.078 Sum_probs=16.7
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHh
Q 005499 551 HGLANLYSGLSHWKDVAICMGKARE 575 (693)
Q Consensus 551 ~~la~~~~~~~~~~~A~~~~~~al~ 575 (693)
..|+.-+...+++-+|-.+..+.+.
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhc
Confidence 5566666777777777776666553
No 416
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=67.13 E-value=8.1 Score=37.93 Aligned_cols=83 Identities=13% Similarity=0.009 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q 005499 547 FQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFS 626 (693)
Q Consensus 547 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 626 (693)
.....+++.+-...+.+..|+..-..++..++....+++..+..+....++++|++.++.+....|++......+..+-.
T Consensus 275 ~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~ 354 (372)
T KOG0546|consen 275 FSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ 354 (372)
T ss_pred cccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence 34555688888899999999988888888888888999999999999999999999999999999998876666555544
Q ss_pred HhC
Q 005499 627 KLG 629 (693)
Q Consensus 627 ~~g 629 (693)
...
T Consensus 355 ~~~ 357 (372)
T KOG0546|consen 355 KKK 357 (372)
T ss_pred HHH
Confidence 433
No 417
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=66.37 E-value=1.2e+02 Score=31.19 Aligned_cols=58 Identities=14% Similarity=0.024 Sum_probs=28.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhcCCCCch--HHHHH--HHHHHHHhCChhHHHHHHHHHHHH
Q 005499 463 LALVLSAQQRFSEAEVVTDAALDETTKWEQG--PILRL--KAKLKIAQALPMDAIETYRYLLAL 522 (693)
Q Consensus 463 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~~~--l~~~~~~~g~~~~A~~~~~~~l~~ 522 (693)
.+.-++..++|..|...++.+...-| ... ..+.. .|..+...-++.+|.+.++..+..
T Consensus 137 ~a~~l~n~~~y~aA~~~l~~l~~rl~--~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 137 RAKELFNRYDYGAAARILEELLRRLP--GREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCC--chhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34444556666666666666555422 111 12222 233344455666666666665543
No 418
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=64.86 E-value=2.3e+02 Score=31.45 Aligned_cols=23 Identities=17% Similarity=0.413 Sum_probs=14.2
Q ss_pred CChHHHHHH--HhCCHHHHHHHHHH
Q 005499 425 NNADLFFDL--EQRNLSTALRYAKQ 447 (693)
Q Consensus 425 ~~~~~~~~l--~~~~~~~A~~~~~~ 447 (693)
.++..++.+ ..|+|+.|+.++-+
T Consensus 259 ~~p~~Yf~~LlLtgqFE~AI~~L~~ 283 (613)
T PF04097_consen 259 SNPLLYFQVLLLTGQFEAAIEFLYR 283 (613)
T ss_dssp -----HHHHHHHTT-HHHHHHHHHT
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHh
Confidence 345555555 89999999999877
No 419
>PRK11619 lytic murein transglycosylase; Provisional
Probab=63.73 E-value=2.5e+02 Score=31.39 Aligned_cols=117 Identities=9% Similarity=0.023 Sum_probs=62.6
Q ss_pred hCCChHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChH
Q 005499 559 GLSHWKDVAICMGKARELKAYSA----EMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALP 634 (693)
Q Consensus 559 ~~~~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~ 634 (693)
...+.+.|...+.+.....+-+. .++..+|.-....+...+|..++..+.... .+...+-....+-...++++
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al~~~dw~-- 329 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS-QSTSLLERRVRMALGTGDRR-- 329 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc-CCcHHHHHHHHHHHHccCHH--
Confidence 44556677777766543332221 233444444344333556666666554322 12233333333444666665
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005499 635 VARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAAS 678 (693)
Q Consensus 635 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 678 (693)
.+...+...-......+...|.+|..+...|+.++|...|+++.
T Consensus 330 ~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 330 GLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 55555555333223445666777777777788887877777764
No 420
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=63.62 E-value=66 Score=26.99 Aligned_cols=61 Identities=18% Similarity=0.182 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhcc
Q 005499 276 EHLTYALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKH 336 (693)
Q Consensus 276 ~~l~~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 336 (693)
+.-..++...|.-+..-+.+....+....+++..+.+|.+|-+.|+..+|-++++++.+.+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3334456778888888888888876666788899999999999999999999999998854
No 421
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=63.02 E-value=3e+02 Score=32.14 Aligned_cols=86 Identities=13% Similarity=0.063 Sum_probs=52.9
Q ss_pred CHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcC----CcHHHH
Q 005499 287 QTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLAAKICSEDC----HLAAEG 362 (693)
Q Consensus 287 ~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~----~~~~~A 362 (693)
.+.+|...|++.-. .+.-+--|...|.+|.+.|++++=+++|.-+++.. |.++..-.+.-.+++..- .....+
T Consensus 534 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (932)
T PRK13184 534 DFTQALSEFSYLHG-GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRY--SQHPEISRLRDHLVYRLHESLYKHRREA 610 (932)
T ss_pred HHHHHHHHHHHhcC-CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhc--CCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777776543 34455567778888888999999999998888854 777665554444433221 111144
Q ss_pred HHHHHHHHHhhcC
Q 005499 363 IQYARTALSNAQG 375 (693)
Q Consensus 363 ~~~~~~al~~~~~ 375 (693)
..+.--++...|.
T Consensus 611 ~~~~~~~~~~~~~ 623 (932)
T PRK13184 611 LVFMLLALWIAPE 623 (932)
T ss_pred HHHHHHHHHhCcc
Confidence 4555555555553
No 422
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=62.59 E-value=27 Score=31.88 Aligned_cols=44 Identities=23% Similarity=0.120 Sum_probs=21.5
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCC
Q 005499 602 RAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEP 648 (693)
Q Consensus 602 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p 648 (693)
+..++.+...| ++..+.+++.++...|+.+ +|....+++....|
T Consensus 132 ~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~--eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 132 EWAERLLRRRP-DPNVYQRYALALALLGDPE--EARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCC
Confidence 33344444444 2344455555555555555 55555555555555
No 423
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=62.21 E-value=1.5e+02 Score=28.51 Aligned_cols=80 Identities=10% Similarity=-0.012 Sum_probs=47.9
Q ss_pred HhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChHHHHHHHhCCHHHHHHHHHHHHHhcCCCcHHHHH
Q 005499 382 GVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNADLFFDLEQRNLSTALRYAKQYIDATGGSVLKGWK 461 (693)
Q Consensus 382 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~A~~~~~~al~~~p~~~~~~~~ 461 (693)
+..+..+|..++..+++ .+|..+|-..- ++.... ...-.+....+-.|... +.+.
T Consensus 90 p~LH~~~a~~~~~e~~~-----------~~A~~Hfl~~~-----~~~~~~--------~~~ll~~~~~~~~~~e~-dlfi 144 (260)
T PF04190_consen 90 PELHHLLAEKLWKEGNY-----------YEAERHFLLGT-----DPSAFA--------YVMLLEEWSTKGYPSEA-DLFI 144 (260)
T ss_dssp HHHHHHHHHHHHHTT-H-----------HHHHHHHHTS------HHHHHH--------HHHHHHHHHHHTSS--H-HHHH
T ss_pred HHHHHHHHHHHHhhccH-----------HHHHHHHHhcC-----ChhHHH--------HHHHHHHHHHhcCCcch-hHHH
Confidence 88999999999999999 89888876431 111110 00011122223345555 5555
Q ss_pred HHHH-HHHHcCChHHHHHHHHHHHhh
Q 005499 462 LLAL-VLSAQQRFSEAEVVTDAALDE 486 (693)
Q Consensus 462 ~la~-~~~~~g~~~~A~~~~~~al~~ 486 (693)
..+. -|...++...|...+....+.
T Consensus 145 ~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 145 ARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 5554 566779999999888776655
No 424
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=61.54 E-value=1.1e+02 Score=30.08 Aligned_cols=26 Identities=8% Similarity=-0.206 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHH
Q 005499 458 KGWKLLALVLSAQQRFSEAEVVTDAA 483 (693)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~a 483 (693)
+++...+..|++.|+-+.|++.+.+.
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t 130 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKT 130 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34444445555555555544444443
No 425
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=61.49 E-value=62 Score=29.78 Aligned_cols=54 Identities=17% Similarity=0.221 Sum_probs=39.3
Q ss_pred HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcC
Q 005499 434 EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETT 488 (693)
Q Consensus 434 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 488 (693)
+.+...+++...+.-++..|.+. .....+-.++.-.|+|++|...++-+-...|
T Consensus 13 ~~~sL~dai~~a~~qVkakPtda-~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p 66 (273)
T COG4455 13 DDNSLQDAIGLARDQVKAKPTDA-GGRHFLFQLLCVAGDWEKALAQLNLAATLSP 66 (273)
T ss_pred HhccHHHHHHHHHHHHhcCCccc-cchhHHHHHHhhcchHHHHHHHHHHHhhcCc
Confidence 55667777777777777777776 7777777777777777777777777766666
No 426
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.96 E-value=55 Score=33.07 Aligned_cols=98 Identities=12% Similarity=0.083 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 005499 494 PILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKA 573 (693)
Q Consensus 494 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 573 (693)
.++..++.-|...|+++.|++.|-++-...... ......|.++..+-...|+|..-..+..++
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~-----------------khvInm~ln~i~VSI~~~nw~hv~sy~~~A 213 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSA-----------------KHVINMCLNLILVSIYMGNWGHVLSYISKA 213 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcch-----------------HHHHHHHHHHHHHHHhhcchhhhhhHHHHH
Confidence 356677888888899999988888866554322 233677888888888888888777777776
Q ss_pred HhhC-------C-CCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 005499 574 RELK-------A-YSAEMLHTEGVMHEGCGQTHEALRAYINAL 608 (693)
Q Consensus 574 l~~~-------p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 608 (693)
...- + -.+.+...-|.+....++|..|..+|-.+.
T Consensus 214 ~st~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 214 ESTPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred HhCchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5531 0 012244555666677779999988886653
No 427
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=60.06 E-value=1.8e+02 Score=28.65 Aligned_cols=28 Identities=11% Similarity=0.083 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 005499 547 FQVWHGLANLYSGLSHWKDVAICMGKAR 574 (693)
Q Consensus 547 ~~~~~~la~~~~~~~~~~~A~~~~~~al 574 (693)
.+++.+.+..|++.|+-+.|.+.+.+..
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~ 131 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTY 131 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4566666666666666666666655544
No 428
>PRK12798 chemotaxis protein; Reviewed
Probab=59.25 E-value=2.2e+02 Score=29.31 Aligned_cols=121 Identities=7% Similarity=-0.069 Sum_probs=72.2
Q ss_pred HhCCHHHHHHHHHHHHHhcCCCcHHH---HHHHHHHHHHcCChHHHHHHHHHHHhh-cCCCCchHHHHHHHHHHHHhCCh
Q 005499 434 EQRNLSTALRYAKQYIDATGGSVLKG---WKLLALVLSAQQRFSEAEVVTDAALDE-TTKWEQGPILRLKAKLKIAQALP 509 (693)
Q Consensus 434 ~~~~~~~A~~~~~~al~~~p~~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~l~~~~~~~g~~ 509 (693)
..|+.++...+..+.+.....++ .+ +...+......++-. -...+..++.. +|. ....+|..+++.-...|+.
T Consensus 197 ~~g~~~rf~~la~~Y~rRF~~S~-YA~~F~~~F~~~~~~~~d~~-~~~~l~~~ls~~d~~-~q~~lYL~iAR~Ali~Gk~ 273 (421)
T PRK12798 197 QLGDADKFEALARNYLRRFRHSP-YASQFAQRFVDLVVRLDDEI-RDARLVEILSFMDPE-RQRELYLRIARAALIDGKT 273 (421)
T ss_pred hcCcHHHHHHHHHHHHHHhccCc-hHHHHHHHHHHHHHhccccc-cHHHHHHHHHhcCch-hHHHHHHHHHHHHHHcCcH
Confidence 56666666666666666555554 32 333333443333222 22335555554 332 4566788888888889999
Q ss_pred hHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 005499 510 MDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKA 573 (693)
Q Consensus 510 ~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 573 (693)
+-|.-.-.+++.+..... .....+.+.-+-...-..++++++..+...
T Consensus 274 ~lA~~As~~A~~L~~~~~----------------~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 274 ELARFASERALKLADPDS----------------ADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHHHHHHHHHHhccCCC----------------cchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 999888888888753221 333455555555556666777777766654
No 429
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=58.81 E-value=1.5e+02 Score=28.42 Aligned_cols=125 Identities=10% Similarity=-0.028 Sum_probs=83.0
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC--CChHHHHHHHHHHHhhCCCChhHHHHHHHHH---HHhCCCC-hHHH
Q 005499 563 WKDVAICMGKARELKAYSAEMLHTEGVMHEGC--GQTHEALRAYINALLIEPSYVPCKVLVGSLF---SKLGPKA-LPVA 636 (693)
Q Consensus 563 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~---~~~g~~~-l~~A 636 (693)
++.-+.++..+++.+|.+-.+|...-.++... .++..-....++.+..+|.+..+|...-.+. ...+++. +..-
T Consensus 90 ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e 169 (328)
T COG5536 90 LDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHE 169 (328)
T ss_pred hhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHH
Confidence 45566778888888999988888877777665 5677777788889999998877776554444 1223333 1134
Q ss_pred HHHHHHHHhhCCCCHHHHHHH---HHHHHHcCC------hHHHHHHHHHHHhcccCCCCC
Q 005499 637 RSLLSDALRIEPTNRKAWYYL---GLVHKDDGR------IADAADCFQAASMLEESDPIE 687 (693)
Q Consensus 637 ~~~~~~al~~~p~~~~~~~~l---g~~~~~~g~------~~~A~~~~~~al~l~p~~~~~ 687 (693)
.++-...+..++.|+.+|... -...+..|+ +++-+++...++-.+|++..+
T Consensus 170 ~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~ 229 (328)
T COG5536 170 LEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSV 229 (328)
T ss_pred HHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccch
Confidence 555556677888888888876 333444554 344556666666677766543
No 430
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=57.94 E-value=1.6e+02 Score=28.32 Aligned_cols=119 Identities=13% Similarity=0.105 Sum_probs=77.6
Q ss_pred ccHHHHHHHHHHHHHhC--CChHHHHHHHHHHHhhCCCCHHHHHHHHHHH------HHCCChHHHHHHHHHHHhhCCCCh
Q 005499 544 VNEFQVWHGLANLYSGL--SHWKDVAICMGKARELKAYSAEMLHTEGVMH------EGCGQTHEALRAYINALLIEPSYV 615 (693)
Q Consensus 544 ~~~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~------~~~g~~~~A~~~~~~al~~~p~~~ 615 (693)
|.+..+|...-.++... .++..-+.+.++.+..++.+-.+|...-.+. .....+.+-.++-...+..++.+.
T Consensus 105 PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~ 184 (328)
T COG5536 105 PKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNN 184 (328)
T ss_pred CchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCCh
Confidence 44467777766666544 5688888888999999998877765444333 333334445566667778899999
Q ss_pred hHHHHH---HHHHHHhCCCC----hHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 005499 616 PCKVLV---GSLFSKLGPKA----LPVARSLLSDALRIEPTNRKAWYYLGLVHK 662 (693)
Q Consensus 616 ~~~~~l---a~~~~~~g~~~----l~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 662 (693)
.+|... -......|++- +.+-+.+.-.++-.+|++..+|..+-.+..
T Consensus 185 SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~~ 238 (328)
T COG5536 185 SAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVSS 238 (328)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHHhc
Confidence 998877 33334455543 223445555566678999888887655443
No 431
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=57.89 E-value=1.2e+02 Score=25.74 Aligned_cols=37 Identities=14% Similarity=0.062 Sum_probs=21.5
Q ss_pred HHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHh
Q 005499 468 SAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQ 506 (693)
Q Consensus 468 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 506 (693)
...+.......+++.++..++ .+...+..+..++...
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~--~~~~~~~~li~ly~~~ 54 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNS--ENPALQTKLIELYAKY 54 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCc--cchhHHHHHHHHHHHH
Confidence 344556666666666666555 4555566666665543
No 432
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=57.82 E-value=2e+02 Score=28.52 Aligned_cols=166 Identities=14% Similarity=0.067 Sum_probs=96.5
Q ss_pred HhCCHHHHHHHHHHHHHh----cC-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhc-----CCCCchHHHHHHHHHH
Q 005499 434 EQRNLSTALRYAKQYIDA----TG-GSVLKGWKLLALVLSAQQRFSEAEVVTDAALDET-----TKWEQGPILRLKAKLK 503 (693)
Q Consensus 434 ~~~~~~~A~~~~~~al~~----~p-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~~~l~~~~ 503 (693)
..++|.+|+......++. +. ....+++..-..+|....+..+|...+..+-... |+.-...+-..-|.++
T Consensus 140 d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlh 219 (411)
T KOG1463|consen 140 DTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILH 219 (411)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhcccee
Confidence 677788887776665542 11 1111456666778888888888888877665432 2001111222334455
Q ss_pred HHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHH--HHHHhhCCCCH
Q 005499 504 IAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICM--GKARELKAYSA 581 (693)
Q Consensus 504 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~--~~al~~~p~~~ 581 (693)
....+|.-|..+|=++++-+..- +..+....++..+-.+-...+..++--.++ ..+++....+.
T Consensus 220 a~ekDykTafSYFyEAfEgf~s~--------------~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i 285 (411)
T KOG1463|consen 220 AAEKDYKTAFSYFYEAFEGFDSL--------------DDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDI 285 (411)
T ss_pred ecccccchHHHHHHHHHcccccc--------------CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcch
Confidence 55578888888888888755222 111222333334444444556666544443 44556556667
Q ss_pred HHHHHHHHHHHHC--CChHHHHHHHHHHHhhCCC
Q 005499 582 EMLHTEGVMHEGC--GQTHEALRAYINALLIEPS 613 (693)
Q Consensus 582 ~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~ 613 (693)
.++...+..+... .+|+.|+..|..-+..+|-
T Consensus 286 ~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 286 DAMKAVAEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 7777777766543 4678888888887776654
No 433
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=56.85 E-value=70 Score=23.79 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=12.2
Q ss_pred HHHHHHHHCCChHHHHHHHHHHH
Q 005499 586 TEGVMHEGCGQTHEALRAYINAL 608 (693)
Q Consensus 586 ~lg~~~~~~g~~~~A~~~~~~al 608 (693)
..+.-+-..|++++|+.+|++++
T Consensus 11 ~~AVe~D~~gr~~eAi~~Y~~aI 33 (75)
T cd02682 11 INAVKAEKEGNAEDAITNYKKAI 33 (75)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Confidence 33444455566666666555443
No 434
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=56.81 E-value=1.2e+02 Score=25.41 Aligned_cols=85 Identities=13% Similarity=0.099 Sum_probs=55.5
Q ss_pred CChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHh--hCCCCHHHH
Q 005499 507 ALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARE--LKAYSAEML 584 (693)
Q Consensus 507 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~ 584 (693)
+.-..-...+++++.....++.- .+.+....+|...+.... ++..+|..+.. +....+..|
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y-----------~nD~RylkiWi~ya~~~~------~~~~if~~l~~~~IG~~~A~fY 102 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERY-----------KNDERYLKIWIKYADLSS------DPREIFKFLYSKGIGTKLALFY 102 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGG-----------TT-HHHHHHHHHHHTTBS------HHHHHHHHHHHHTTSTTBHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhh-----------cCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCccHHHHHHH
Confidence 34455566777777776544211 111333555655554222 77888877665 456678889
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHH
Q 005499 585 HTEGVMHEGCGQTHEALRAYINAL 608 (693)
Q Consensus 585 ~~lg~~~~~~g~~~~A~~~~~~al 608 (693)
...|..+...|++++|.+.|+.++
T Consensus 103 ~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 103 EEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhC
Confidence 999999999999999999998865
No 435
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=56.60 E-value=24 Score=26.22 Aligned_cols=18 Identities=28% Similarity=0.338 Sum_probs=13.8
Q ss_pred hCChhHHHHHHHHHHHHH
Q 005499 506 QALPMDAIETYRYLLALV 523 (693)
Q Consensus 506 ~g~~~~A~~~~~~~l~~~ 523 (693)
.|++++|+.+|..+++..
T Consensus 19 ~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 19 KGNAEEAIELYTEAVELC 36 (75)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 567888888888887765
No 436
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=55.53 E-value=43 Score=28.62 Aligned_cols=49 Identities=12% Similarity=0.147 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCC
Q 005499 582 EMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGP 630 (693)
Q Consensus 582 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 630 (693)
+.....+.-....|++.-|.++...++..+|++..+...++.++.++|.
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 4444555556666777777777777777777777777666666666653
No 437
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.48 E-value=95 Score=33.25 Aligned_cols=74 Identities=11% Similarity=-0.058 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHH
Q 005499 437 NLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETY 516 (693)
Q Consensus 437 ~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 516 (693)
.+-+...+.+++|++.++.. -. -.+..+.|+++.|.++..++ ++..-|..||......+++..|.++|
T Consensus 622 ~Fle~~g~~e~AL~~s~D~d--~r---Felal~lgrl~iA~~la~e~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~ 689 (794)
T KOG0276|consen 622 HFLESQGMKEQALELSTDPD--QR---FELALKLGRLDIAFDLAVEA-------NSEVKWRQLGDAALSAGELPLASECF 689 (794)
T ss_pred hHhhhccchHhhhhcCCChh--hh---hhhhhhcCcHHHHHHHHHhh-------cchHHHHHHHHHHhhcccchhHHHHH
Confidence 34444555666777766653 22 23456778888888766553 45566899999999999999999999
Q ss_pred HHHHHH
Q 005499 517 RYLLAL 522 (693)
Q Consensus 517 ~~~l~~ 522 (693)
.++...
T Consensus 690 ~~a~d~ 695 (794)
T KOG0276|consen 690 LRARDL 695 (794)
T ss_pred Hhhcch
Confidence 887655
No 438
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.43 E-value=3.5e+02 Score=30.54 Aligned_cols=63 Identities=8% Similarity=-0.047 Sum_probs=41.6
Q ss_pred HHHHhcCCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHH
Q 005499 280 YALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLM 343 (693)
Q Consensus 280 ~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~ 343 (693)
..+.+...|+.|+..-..--.....-...+...|.-++..|++++|...|-+.+.. .+|..+.
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s~Vi 404 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPSEVI 404 (933)
T ss_pred HHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChHHHH
Confidence 34555666666666554322111123456777899999999999999999999886 4565443
No 439
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=54.56 E-value=87 Score=23.30 Aligned_cols=41 Identities=20% Similarity=0.361 Sum_probs=30.9
Q ss_pred HHHHHHHHHhHhhCChHHHHHHHHHHHHHHHHhhhcCCCChh
Q 005499 123 EAIYLKAKSLQKLGRLTEAANECKSVLDAVERIFQQGIPDAQ 164 (693)
Q Consensus 123 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 164 (693)
-.+..+|+-+-+.|++++|+..|++.++..-+... +.|+..
T Consensus 7 ~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~-~~pD~~ 47 (75)
T cd02682 7 RKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVK-NYPDSP 47 (75)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH-hCCChH
Confidence 34677899999999999999999988877655442 345543
No 440
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=52.69 E-value=1.7e+02 Score=26.14 Aligned_cols=190 Identities=13% Similarity=-0.007 Sum_probs=112.2
Q ss_pred CcHHHHHHHHHHHHH-CCCcHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHh-----cCCcHHHHHHHHHHHHHhhcCCC
Q 005499 304 LRSDRWNALALCYSA-IGQNDAALNLLRKSLHKHERPNDLMALLLAAKICSE-----DCHLAAEGIQYARTALSNAQGKD 377 (693)
Q Consensus 304 ~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~-----~~~~~~~A~~~~~~al~~~~~~~ 377 (693)
.+++..+.|+.-+-. ..+|++|..+|+.-... -..+...+-+|...+. .++.. .|++.+..+-....
T Consensus 32 K~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCde---n~y~kSCyKyG~y~~~GKgG~~~~l~-~a~r~~~~aC~~n~--- 104 (248)
T KOG4014|consen 32 KRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDE---NSYPKSCYKYGMYMLAGKGGDDASLS-KAIRPMKIACDANI--- 104 (248)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhcccc---cCCcHHHHHhhhhhhcccCCCccCHH-HHHHHHHHHhccCC---
Confidence 567788888876653 56789999988876652 3456666666644432 12233 67777776665332
Q ss_pred cchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChHHHHHH---HhCCHHHHHHHHHHHHHhcCC
Q 005499 378 EHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNADLFFDL---EQRNLSTALRYAKQYIDATGG 454 (693)
Q Consensus 378 ~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l---~~~~~~~A~~~~~~al~~~p~ 454 (693)
+.+...+|.+++........ .-...+|.+++.++-.+ ++..+.+.| ..+..+++ ....|.
T Consensus 105 ----~~aC~~~gLl~~~g~~~r~~----dpd~~Ka~~y~traCdl--~~~~aCf~LS~m~~~g~~k~-------~t~ap~ 167 (248)
T KOG4014|consen 105 ----PQACRYLGLLHWNGEKDRKA----DPDSEKAERYMTRACDL--EDGEACFLLSTMYMGGKEKF-------KTNAPG 167 (248)
T ss_pred ----HHHHhhhhhhhccCcCCccC----CCCcHHHHHHHHHhccC--CCchHHHHHHHHHhccchhh-------cccCCC
Confidence 67777888877654432100 11127888888888755 445555555 33333332 111331
Q ss_pred CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHh----CChhHHHHHHHHHHHHH
Q 005499 455 SVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQ----ALPMDAIETYRYLLALV 523 (693)
Q Consensus 455 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~l~~~ 523 (693)
.. --...+..+.-.++.+.|.+.--++-++.. +.+.-+..+.|-.- .+.++|..+-+++.++.
T Consensus 168 ~g--~p~~~~~~~~~~kDMdka~qfa~kACel~~----~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~ 234 (248)
T KOG4014|consen 168 EG--KPLDRAELGSLSKDMDKALQFAIKACELDI----PQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIM 234 (248)
T ss_pred CC--CCcchhhhhhhhHhHHHHHHHHHHHHhcCC----hHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHH
Confidence 11 012344555666788888888877776543 45555566665443 35677888777777765
No 441
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=51.17 E-value=1.8e+02 Score=27.23 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=24.0
Q ss_pred cchhHhHHHHHHHHHhh---------hhcccCChHHHhHHHHHHHHHHHHHHhcCCCC
Q 005499 378 EHLKGVGLRMLGLCLGR---------HAKVSSSDYERSRLQSEALKSLDGASTFENNN 426 (693)
Q Consensus 378 ~~~~~~~~~~lg~~~~~---------~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 426 (693)
+...+..+...|..+.+ .++. ..|+.++++|+.++|+-
T Consensus 165 d~vrAKl~K~~G~~llr~~~g~~~~d~~~l-----------~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 165 DEVRAKLYKAAGYLLLRNEKGEPIGDAETL-----------QLALALLQRAFQLNDKC 211 (230)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCccCcccH-----------HHHHHHHHHHHHhCCCC
Confidence 44446667777776633 2344 67777777777777654
No 442
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=51.15 E-value=78 Score=32.40 Aligned_cols=45 Identities=11% Similarity=-0.049 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 005499 563 WKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINA 607 (693)
Q Consensus 563 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 607 (693)
.-+|+.+++.++...|.+......+..+|...|-...|...|...
T Consensus 199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 457888899999999999999999999999999999999988643
No 443
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.37 E-value=81 Score=32.22 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=21.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHh
Q 005499 655 YYLGLVHKDDGRIADAADCFQAASM 679 (693)
Q Consensus 655 ~~lg~~~~~~g~~~~A~~~~~~al~ 679 (693)
..-|.+.+.+|+-++|.++++.|..
T Consensus 271 LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 271 LLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3469999999999999999998865
No 444
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=50.06 E-value=32 Score=25.57 Aligned_cols=18 Identities=17% Similarity=0.040 Sum_probs=12.4
Q ss_pred hCCChHHHHHHHHHHHhh
Q 005499 559 GLSHWKDVAICMGKAREL 576 (693)
Q Consensus 559 ~~~~~~~A~~~~~~al~~ 576 (693)
..|++++|+.+|..+++.
T Consensus 18 ~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 18 EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 456777777777777653
No 445
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=49.87 E-value=1.5e+02 Score=30.23 Aligned_cols=44 Identities=16% Similarity=-0.031 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 005499 438 LSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDA 482 (693)
Q Consensus 438 ~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 482 (693)
.-+|+..++.++...|.+. .....+..+|...|-...|...|..
T Consensus 199 l~~Ai~lLE~~l~~s~~n~-~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPHNY-QLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 4466677777777788887 8888888888888988888888865
No 446
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=49.09 E-value=45 Score=24.17 Aligned_cols=22 Identities=14% Similarity=0.025 Sum_probs=14.4
Q ss_pred HHHHHhCCChHHHHHHHHHHHh
Q 005499 554 ANLYSGLSHWKDVAICMGKARE 575 (693)
Q Consensus 554 a~~~~~~~~~~~A~~~~~~al~ 575 (693)
|.-.-..|++++|+.+|.+++.
T Consensus 12 Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 12 AVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 3333467788888887777654
No 447
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.15 E-value=3.3e+02 Score=28.09 Aligned_cols=68 Identities=13% Similarity=0.089 Sum_probs=44.2
Q ss_pred CcHHHHHHHHHHHHHCCCcHHHHHHHHHHh----hccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 005499 304 LRSDRWNALALCYSAIGQNDAALNLLRKSL----HKHERPNDLMALLLAAKICSEDCHLAAEGIQYARTALSN 372 (693)
Q Consensus 304 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l----~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~ 372 (693)
++..+++.+-.|..+-|+++.|...+-+++ +.+.+|.-...++++-..+ +.++...-+..++......
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~-re~dp~k~as~~i~dI~N~ 342 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFK-RESDPQKVASSWINDIQNS 342 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhc-ccCCchhhhHHHHHHHHHh
Confidence 456678888899999999988776655554 4556777666666555333 3444433566666666554
No 448
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=47.49 E-value=3.3e+02 Score=27.88 Aligned_cols=55 Identities=13% Similarity=-0.037 Sum_probs=39.8
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCC--C---HHHHHH--HHHHHHHCCChHHHHHHHHH
Q 005499 552 GLANLYSGLSHWKDVAICMGKARELKAY--S---AEMLHT--EGVMHEGCGQTHEALRAYIN 606 (693)
Q Consensus 552 ~la~~~~~~~~~~~A~~~~~~al~~~p~--~---~~~~~~--lg~~~~~~g~~~~A~~~~~~ 606 (693)
..+..++..++|..|...|+++....+. . ...+.. .|..+...-++++|...+++
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 3455778999999999999999977532 1 223333 44555667889999999986
No 449
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.58 E-value=4.8e+02 Score=30.84 Aligned_cols=168 Identities=15% Similarity=0.039 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHH------------------------------HHHHHHhC
Q 005499 458 KGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLK------------------------------AKLKIAQA 507 (693)
Q Consensus 458 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l------------------------------~~~~~~~g 507 (693)
.....+|.+|...|+..+|+.+|.++..-..+ ..++..+ .+++...+
T Consensus 921 v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge---~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn 997 (1480)
T KOG4521|consen 921 VIRFMLGIAYLGTGEPVKALNCFQSALSGFGE---GNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHN 997 (1480)
T ss_pred HHHHhhheeeecCCchHHHHHHHHHHhhcccc---HHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhc
Confidence 45677888999999999999999998875442 1122222 23333334
Q ss_pred ChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCH---HHH
Q 005499 508 LPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSA---EML 584 (693)
Q Consensus 508 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~ 584 (693)
-.+.+++...++++.-| ++.|..+.....+-+-+...|.+-+|... +-.+|+.. ..+
T Consensus 998 ~~E~vcQlA~~AIe~l~----------------dd~ps~a~~~t~vFnhhldlgh~~qAy~a----i~~npdserrrdcL 1057 (1480)
T KOG4521|consen 998 HAEEVCQLAVKAIENLP----------------DDNPSVALISTTVFNHHLDLGHWFQAYKA----ILRNPDSERRRDCL 1057 (1480)
T ss_pred cHHHHHHHHHHHHHhCC----------------CcchhHHHHHHHHHHhhhchhhHHHHHHH----HHcCCcHHHHHHHH
Confidence 44444444444444332 23355566666667777788888887653 33455532 345
Q ss_pred HHHHHHHHHCCChHH------------HHH-HHHHHHhhCCCChhHHHHHHHH-HHHhCCCChHHHHHHHHHHHhhCCC
Q 005499 585 HTEGVMHEGCGQTHE------------ALR-AYINALLIEPSYVPCKVLVGSL-FSKLGPKALPVARSLLSDALRIEPT 649 (693)
Q Consensus 585 ~~lg~~~~~~g~~~~------------A~~-~~~~al~~~p~~~~~~~~la~~-~~~~g~~~l~~A~~~~~~al~~~p~ 649 (693)
..+-.+++..|+++. -.. .++.+-+..|....-++.+-.+ +...+++. ..|-.+|+.+.++..+
T Consensus 1058 RqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~R-kaatvMYEyamrl~se 1135 (1480)
T KOG4521|consen 1058 RQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFR-KAATVMYEYAMRLESE 1135 (1480)
T ss_pred HHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchh-HHHHHHHHHHHHhccc
Confidence 666667777776542 112 3333434444443334444333 44566665 3455677777776543
No 450
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=45.11 E-value=1.3e+02 Score=24.89 Aligned_cols=65 Identities=15% Similarity=0.005 Sum_probs=45.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHCCChHHHHHHHHHH----Hhh
Q 005499 550 WHGLANLYSGLSHWKDVAICMGKARELKAYS---------------AEMLHTEGVMHEGCGQTHEALRAYINA----LLI 610 (693)
Q Consensus 550 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~a----l~~ 610 (693)
+..+|....+.+++-.++-.|++|+.+..+- .....+++..+..+|+.+-.+++++-| +.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 4567888888888888888888888653211 223567888888888888888877644 444
Q ss_pred CCCC
Q 005499 611 EPSY 614 (693)
Q Consensus 611 ~p~~ 614 (693)
-|..
T Consensus 84 iPQC 87 (140)
T PF10952_consen 84 IPQC 87 (140)
T ss_pred ccCC
Confidence 5543
No 451
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=44.81 E-value=1.2e+02 Score=31.55 Aligned_cols=80 Identities=16% Similarity=0.144 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcC-CCCCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Q 005499 275 MEHLTYALSLCSQTSILAKQLEEIMP-GVFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLAAKICS 353 (693)
Q Consensus 275 ~~~l~~~~~~~g~~~~a~~~~e~~l~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~ 353 (693)
...+...+...|..+.++.++..-+. +.+.+..+.+.+...+++.|+|..|..+...+... ...+++....+.-.+|+
T Consensus 106 ~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 106 HHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHh-hccCCchHHHHHHHHHH
Confidence 34667778888999999998876554 44677788888999999999999999998887764 34455444444333454
Q ss_pred hc
Q 005499 354 ED 355 (693)
Q Consensus 354 ~~ 355 (693)
..
T Consensus 185 ~~ 186 (429)
T PF10037_consen 185 KY 186 (429)
T ss_pred Hh
Confidence 43
No 452
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=44.63 E-value=3.9e+02 Score=27.92 Aligned_cols=170 Identities=15% Similarity=0.030 Sum_probs=94.4
Q ss_pred CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchH-----HHHHHHHHHHHhCCh-------hHHHHHHHHHH
Q 005499 453 GGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGP-----ILRLKAKLKIAQALP-------MDAIETYRYLL 520 (693)
Q Consensus 453 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-----~~~~l~~~~~~~g~~-------~~A~~~~~~~l 520 (693)
++.+......+|+..+..++|+-|...|+.+.+.... +..+ +....+.++...+.. ++...+++.++
T Consensus 204 ~~S~E~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~-Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~ 282 (414)
T PF12739_consen 204 ADSPEAQMRRLADLAFMLRDYELAYSTYRLLKKDFKN-DKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAY 282 (414)
T ss_pred CCChHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHhh-chhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHH
Confidence 3444244667899999999999999999988776541 1111 122333334444422 35555666665
Q ss_pred HHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHhh--CC--C---CHHHHHHHHHHHHH
Q 005499 521 ALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKAREL--KA--Y---SAEMLHTEGVMHEG 593 (693)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p--~---~~~~~~~lg~~~~~ 593 (693)
..+-..... ..........+....+.++...+.+.+|...+-+.... .. . .+-.+-..+.++
T Consensus 283 ~~Y~~~~~~---------~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~-- 351 (414)
T PF12739_consen 283 YTYLKSALP---------RCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCY-- 351 (414)
T ss_pred HHHHhhhcc---------ccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhh--
Confidence 554331000 00000233566677778888888888877766665544 21 1 223344444444
Q ss_pred CCChHHHHHHHHHHHhh-CC--C---C--hhHH-HHHHHHHHHhCCCChHHHHHHHHHHHhhCC
Q 005499 594 CGQTHEALRAYINALLI-EP--S---Y--VPCK-VLVGSLFSKLGPKALPVARSLLSDALRIEP 648 (693)
Q Consensus 594 ~g~~~~A~~~~~~al~~-~p--~---~--~~~~-~~la~~~~~~g~~~l~~A~~~~~~al~~~p 648 (693)
..+.. .| . . ...| ..-|.-|.+.|+.. .|..+|.+++....
T Consensus 352 ------------~~~~~~~~~~~~~r~RK~af~~vLAg~~~~~~~~~~--~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 352 ------------ASLRSNRPSPGLTRFRKYAFHMVLAGHRYSKAGQKK--HALRCYKQALQVYE 401 (414)
T ss_pred ------------cccccCCCCccchhhHHHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHHhC
Confidence 11111 11 1 0 1122 23366788899988 99999999988654
No 453
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=43.50 E-value=4.4e+02 Score=28.15 Aligned_cols=76 Identities=24% Similarity=0.318 Sum_probs=40.8
Q ss_pred HHHHHHHHhcCCCcHHHHHH-HHHHHHHcCChHHHHHHHHHHH-hhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 005499 443 RYAKQYIDATGGSVLKGWKL-LALVLSAQQRFSEAEVVTDAAL-DETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLL 520 (693)
Q Consensus 443 ~~~~~al~~~p~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 520 (693)
.++.++-...++.. ..|.. -+.++.+.|+...|..++.+.- .+.+. .....-...+.+.....++..|...+.+..
T Consensus 49 ~yl~qa~qs~~~~~-~~~~llAa~al~~e~k~~qA~~Ll~ql~~~Ltd~-Q~~~~~LL~ael~la~~q~~~Al~~L~~~~ 126 (604)
T COG3107 49 FYLQQAQQSSGEQQ-NDWLLLAARALVEEGKTAQAQALLNQLPQELTDA-QRAEKSLLAAELALAQKQPAAALQQLAKLL 126 (604)
T ss_pred HHHHHHhhcCchhh-hhHHHHHHHHHHHcCChHHHHHHHHhccccCCHH-HHHHHHHHHHHHHHhccChHHHHHHHhhcc
Confidence 33344444444333 33333 3456677777777777776654 33331 122333455666666677777776666544
No 454
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=43.48 E-value=46 Score=19.85 Aligned_cols=29 Identities=24% Similarity=0.360 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHc----CChHHHHHHHHHHHhc
Q 005499 652 KAWYYLGLVHKDD----GRIADAADCFQAASML 680 (693)
Q Consensus 652 ~~~~~lg~~~~~~----g~~~~A~~~~~~al~l 680 (693)
.+.+.+|.+|..- .+..+|..+|+++.+.
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 3456666666532 2667777777777654
No 455
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=43.04 E-value=52 Score=29.95 Aligned_cols=45 Identities=11% Similarity=-0.073 Sum_probs=23.6
Q ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q 005499 477 EVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQ 524 (693)
Q Consensus 477 ~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 524 (693)
++..++.+...| ++.++..++.++...|+.++|....+++....|
T Consensus 131 ~~~a~~~l~~~P---~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 131 IEWAERLLRRRP---DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHhCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 344444444444 445555555555555555555555555555554
No 456
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=42.92 E-value=50 Score=20.19 Aligned_cols=29 Identities=21% Similarity=0.252 Sum_probs=16.8
Q ss_pred HHHHHHH--HHHHHcC-----ChHHHHHHHHHHHhc
Q 005499 652 KAWYYLG--LVHKDDG-----RIADAADCFQAASML 680 (693)
Q Consensus 652 ~~~~~lg--~~~~~~g-----~~~~A~~~~~~al~l 680 (693)
.+.+.+| .++..-. +.++|..+|++|.+.
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence 4566666 4333322 356777777777654
No 457
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.40 E-value=5.6e+02 Score=29.09 Aligned_cols=90 Identities=12% Similarity=-0.003 Sum_probs=61.0
Q ss_pred hhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhc-CCCChHHHHHHHhCCHHHHHHHHHHHHHhcCCCcHH
Q 005499 380 LKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTF-ENNNADLFFDLEQRNLSTALRYAKQYIDATGGSVLK 458 (693)
Q Consensus 380 ~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~A~~~~~~al~~~p~~~~~ 458 (693)
.....+...|.-++.+|++ ++|...|.+.+.. +|.. .....+......+-..+++...+..-.+. +
T Consensus 366 ~~~~i~~kYgd~Ly~Kgdf-----------~~A~~qYI~tI~~le~s~-Vi~kfLdaq~IknLt~YLe~L~~~gla~~-d 432 (933)
T KOG2114|consen 366 TLAEIHRKYGDYLYGKGDF-----------DEATDQYIETIGFLEPSE-VIKKFLDAQRIKNLTSYLEALHKKGLANS-D 432 (933)
T ss_pred HHHHHHHHHHHHHHhcCCH-----------HHHHHHHHHHcccCChHH-HHHHhcCHHHHHHHHHHHHHHHHcccccc-h
Confidence 4477788889999999999 9999999999843 3322 12222244445555566666666555554 5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHH
Q 005499 459 GWKLLALVLSAQQRFSEAEVVTDA 482 (693)
Q Consensus 459 ~~~~la~~~~~~g~~~~A~~~~~~ 482 (693)
--..|-.+|.++++.++-.+..++
T Consensus 433 httlLLncYiKlkd~~kL~efI~~ 456 (933)
T KOG2114|consen 433 HTTLLLNCYIKLKDVEKLTEFISK 456 (933)
T ss_pred hHHHHHHHHHHhcchHHHHHHHhc
Confidence 556677889999988776665554
No 458
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=41.81 E-value=64 Score=19.37 Aligned_cols=16 Identities=13% Similarity=0.135 Sum_probs=8.7
Q ss_pred hHHHHHHHHHHHhhcC
Q 005499 473 FSEAEVVTDAALDETT 488 (693)
Q Consensus 473 ~~~A~~~~~~al~~~p 488 (693)
++.|..+|++.+..+|
T Consensus 3 ~dRAR~IyeR~v~~hp 18 (32)
T PF02184_consen 3 FDRARSIYERFVLVHP 18 (32)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 4455555555555555
No 459
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=41.72 E-value=3.6e+02 Score=26.65 Aligned_cols=110 Identities=15% Similarity=0.071 Sum_probs=67.3
Q ss_pred HHHHHHHHHhhcCCHHHHHhhhccCCcchhhhhccccchhhhhhhccCCCCCCCccchhhHHHHHHHHHHHHHHHhHhhC
Q 005499 57 ARALLGRLEYQRGNVEGALRVFDGIDLHAAIQRLQPSFSEKSASKKCRSRSDSHVSVSQHAASLVLEAIYLKAKSLQKLG 136 (693)
Q Consensus 57 a~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 136 (693)
.+..|+.+|-+.+++..|-..+..+..+.- ++ ..........+...|..|...+
T Consensus 105 irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg-~~-------------------------~~d~~~kl~l~iriarlyLe~~ 158 (399)
T KOG1497|consen 105 IRLHLASIYEKEQNWRDAAQVLVGIPLDTG-QK-------------------------AYDVEQKLLLCIRIARLYLEDD 158 (399)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhccCcccc-hh-------------------------hhhhHHHHHHHHHHHHHHHhcC
Confidence 466899999999999999999988765530 00 1112223456777899999999
Q ss_pred ChHHHHHHHHHHHHHHHHhhhcCCCChhhhhhHHHHHHHHHhhhHHHHhhcCCchHHHHHHHHHhccc
Q 005499 137 RLTEAANECKSVLDAVERIFQQGIPDAQVDNRLQETVSRAVELLPELWKQVGCDHDALAAYRRAVLSQ 204 (693)
Q Consensus 137 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 204 (693)
+..+|..+..+. ++.- .... ..++. +--++++ +.+.--.+++-+|...|-+.....
T Consensus 159 d~veae~~inRa-Sil~-----a~~~---Ne~Lq-ie~kvc~--ARvlD~krkFlEAAqrYyels~~k 214 (399)
T KOG1497|consen 159 DKVEAEAYINRA-SILQ-----AESS---NEQLQ-IEYKVCY--ARVLDYKRKFLEAAQRYYELSQRK 214 (399)
T ss_pred cHHHHHHHHHHH-HHhh-----hccc---CHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998877654 1110 0010 11111 1111111 245555677888888887766543
No 460
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=41.47 E-value=4.3e+02 Score=27.51 Aligned_cols=29 Identities=21% Similarity=0.299 Sum_probs=24.3
Q ss_pred HHHHHHHHhHhhCChHHHHHHHHHHHHHH
Q 005499 124 AIYLKAKSLQKLGRLTEAANECKSVLDAV 152 (693)
Q Consensus 124 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~ 152 (693)
.....|+-++..|+|.+|+..|+.+|...
T Consensus 206 ~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i 234 (422)
T PF06957_consen 206 ERLKEGYKLFTAGKFEEAIEIFRSILHSI 234 (422)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 46667899999999999999999998764
No 461
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=41.19 E-value=3.5e+02 Score=26.33 Aligned_cols=116 Identities=11% Similarity=0.034 Sum_probs=73.0
Q ss_pred HHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHH--HHhCCC----hHHHHHHHHHH
Q 005499 500 AKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANL--YSGLSH----WKDVAICMGKA 573 (693)
Q Consensus 500 ~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~--~~~~~~----~~~A~~~~~~a 573 (693)
...+...++|++=-+.+.+......... +.... +...... ...... ...-...++.-
T Consensus 7 ir~LL~~~~f~eLd~~l~~~~~~~~~s~----------------~~e~~-Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaW 69 (277)
T PF13226_consen 7 IRELLQARDFAELDALLARLLQAWLQSR----------------DGEQR-YFRAWMSSTLFDMDSVVDAWQARLAVLKAW 69 (277)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhhhhcc----------------Cccch-HHHHHhhccccCcchhhhHHHhHHHHHHHH
Confidence 4556677888877777777766543321 11111 1111111 112111 12356666777
Q ss_pred HhhCCCCHHHHHHHHHHHHHCC----------------------ChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCC
Q 005499 574 RELKAYSAEMLHTEGVMHEGCG----------------------QTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPK 631 (693)
Q Consensus 574 l~~~p~~~~~~~~lg~~~~~~g----------------------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 631 (693)
++..|++..++..+|..+.... -.+.|...+.+++.++|....+...+-.+-...|..
T Consensus 70 v~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP 149 (277)
T PF13226_consen 70 VAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEP 149 (277)
T ss_pred HHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCc
Confidence 7889999888887777665321 256788889999999999988888888777777766
Q ss_pred C
Q 005499 632 A 632 (693)
Q Consensus 632 ~ 632 (693)
+
T Consensus 150 ~ 150 (277)
T PF13226_consen 150 D 150 (277)
T ss_pred h
Confidence 5
No 462
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=40.98 E-value=53 Score=24.74 Aligned_cols=35 Identities=20% Similarity=0.104 Sum_probs=21.5
Q ss_pred ChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q 005499 472 RFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALV 523 (693)
Q Consensus 472 ~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 523 (693)
.|+.|...+++++..+. .|+.++|+.+|++++..-
T Consensus 4 ~~~~A~~~I~kaL~~dE-----------------~g~~e~Al~~Y~~gi~~l 38 (79)
T cd02679 4 YYKQAFEEISKALRADE-----------------WGDKEQALAHYRKGLREL 38 (79)
T ss_pred HHHHHHHHHHHHhhhhh-----------------cCCHHHHHHHHHHHHHHH
Confidence 35555555555555544 366777777777777653
No 463
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=40.01 E-value=2.2e+02 Score=23.74 Aligned_cols=83 Identities=10% Similarity=-0.037 Sum_probs=52.5
Q ss_pred CCHHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhH
Q 005499 436 RNLSTALRYAKQYIDATGGSVL----KGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMD 511 (693)
Q Consensus 436 ~~~~~A~~~~~~al~~~p~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~ 511 (693)
+.-..-...+++++....++.. .-+..+=..|.. ..+.+.++|..+....-....+..|...|..+...|++++
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~--~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~ 117 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYAD--LSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKK 117 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHT--TBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHH--HccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHH
Confidence 3444556677777765443310 111222222222 3348889998887754332677889999999999999999
Q ss_pred HHHHHHHHH
Q 005499 512 AIETYRYLL 520 (693)
Q Consensus 512 A~~~~~~~l 520 (693)
|.++|+.++
T Consensus 118 A~~I~~~Gi 126 (126)
T PF08311_consen 118 ADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhC
Confidence 999998764
No 464
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.88 E-value=6.3e+02 Score=28.94 Aligned_cols=103 Identities=13% Similarity=-0.022 Sum_probs=58.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhhCCC--------C--HHHHHHHHHHHH------------HCCChHHH--HHHHH
Q 005499 550 WHGLANLYSGLSHWKDVAICMGKARELKAY--------S--AEMLHTEGVMHE------------GCGQTHEA--LRAYI 605 (693)
Q Consensus 550 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~--------~--~~~~~~lg~~~~------------~~g~~~~A--~~~~~ 605 (693)
-+..|.-+...|++.+|++.|+.++-.-|- . ..-+..++.-|. ..+..+++ +..|=
T Consensus 994 kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYF 1073 (1202)
T KOG0292|consen 994 KLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYF 1073 (1202)
T ss_pred HHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHh
Confidence 445566667889999999999988754331 1 112222222121 11223333 22222
Q ss_pred HHHhhCCCChh-HHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHH
Q 005499 606 NALLIEPSYVP-CKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAW 654 (693)
Q Consensus 606 ~al~~~p~~~~-~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~ 654 (693)
.-..+.|.+.. ++..--.++.+++++. .|-.+.++.+++.|..+.+-
T Consensus 1074 t~~~Lqp~H~ilalrtA~n~ffK~kN~k--tAs~fa~rLlel~~~~~~A~ 1121 (1202)
T KOG0292|consen 1074 THCKLQPMHRILALRTAMNVFFKLKNLK--TAAEFARRLLELAPSPPVAE 1121 (1202)
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHhhCCCChHHH
Confidence 22334454433 3333345677888888 88888888888888766553
No 465
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=38.79 E-value=4.8e+02 Score=27.30 Aligned_cols=109 Identities=14% Similarity=0.117 Sum_probs=72.8
Q ss_pred hhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHhhcCC---CCCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCC
Q 005499 264 HLGKIKWDPAVMEHLTYALSLCSQTSILAKQLEEIMPG---VFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPN 340 (693)
Q Consensus 264 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~e~~l~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~ 340 (693)
..+..|-.+.-.+..........+.+.+...+-+.-.. ..-.+.+.+.+.+.++..|..++++.+++.=+.-+.-|+
T Consensus 58 ~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D 137 (429)
T PF10037_consen 58 FERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPD 137 (429)
T ss_pred HhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCC
Confidence 33444555545555555555555555566655544221 111122345778889999999999999999888888899
Q ss_pred CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhc
Q 005499 341 DLMALLLAAKICSEDCHLAAEGIQYARTALSNAQ 374 (693)
Q Consensus 341 ~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~ 374 (693)
+..+.+++- ..+..+++. .|...+..+.....
T Consensus 138 ~~s~n~Lmd-~fl~~~~~~-~A~~V~~~~~lQe~ 169 (429)
T PF10037_consen 138 NFSFNLLMD-HFLKKGNYK-SAAKVATEMMLQEE 169 (429)
T ss_pred hhhHHHHHH-HHhhcccHH-HHHHHHHHHHHhhc
Confidence 888887765 567788887 88888877666543
No 466
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=38.62 E-value=3.8e+02 Score=26.04 Aligned_cols=29 Identities=17% Similarity=-0.078 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 005499 494 PILRLKAKLKIAQALPMDAIETYRYLLAL 522 (693)
Q Consensus 494 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 522 (693)
.++.++|..|.+.++.+.+.+++.+.++.
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~~~~ 144 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRLMRD 144 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 34555555555555555555555555544
No 467
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=38.61 E-value=39 Score=25.15 Aligned_cols=16 Identities=13% Similarity=0.086 Sum_probs=11.4
Q ss_pred hCCCChHHHHHHHHHHHh
Q 005499 628 LGPKALPVARSLLSDALR 645 (693)
Q Consensus 628 ~g~~~l~~A~~~~~~al~ 645 (693)
.|+++ +|..+|..+++
T Consensus 19 ~~~y~--eA~~~Y~~~i~ 34 (75)
T cd02677 19 EGDYE--AAFEFYRAGVD 34 (75)
T ss_pred HhhHH--HHHHHHHHHHH
Confidence 37777 77777777765
No 468
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=38.50 E-value=1.9e+02 Score=29.97 Aligned_cols=88 Identities=14% Similarity=0.097 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 005499 583 MLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHK 662 (693)
Q Consensus 583 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 662 (693)
.+..|=.+|.+.|+..+|++.-...+-.+|++..+..++..-...+|..+ . .+..+.+.....|+.++.-..
T Consensus 135 py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq~~l~~s~--d------~l~DlE~~~~~~~Fir~v~~y 206 (471)
T KOG4459|consen 135 PYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQTMLGVSE--D------ELTDLERREHEQWFIRGVRLY 206 (471)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHHhccCCCc--c------cccccccchHHHHHHHHhhhc
Confidence 34455667788888888888888877788888877777766555555544 1 112234455566777777777
Q ss_pred HcCChHHHHHHHHHHH
Q 005499 663 DDGRIADAADCFQAAS 678 (693)
Q Consensus 663 ~~g~~~~A~~~~~~al 678 (693)
..+++..+...++.|+
T Consensus 207 ~~~d~~~~v~~ve~AL 222 (471)
T KOG4459|consen 207 SGEDPRQCVPEVELAL 222 (471)
T ss_pred cccCchhcchhHHHHH
Confidence 7777666555554444
No 469
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=38.30 E-value=83 Score=18.32 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=15.8
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHH
Q 005499 637 RSLLSDALRIEPTNRKAWYYLGLVHK 662 (693)
Q Consensus 637 ~~~~~~al~~~p~~~~~~~~lg~~~~ 662 (693)
+++..+++..+|.+..+|..+-.+..
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ll~ 28 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWLLK 28 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHHHH
Confidence 34555666666766666666655544
No 470
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=38.29 E-value=74 Score=23.83 Aligned_cols=18 Identities=6% Similarity=0.368 Sum_probs=11.1
Q ss_pred HhCCChHHHHHHHHHHHh
Q 005499 558 SGLSHWKDVAICMGKARE 575 (693)
Q Consensus 558 ~~~~~~~~A~~~~~~al~ 575 (693)
-..|++++|+.+|.+++.
T Consensus 17 D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 17 DQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 356667777766665543
No 471
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.52 E-value=7.1e+02 Score=28.86 Aligned_cols=174 Identities=13% Similarity=0.059 Sum_probs=95.0
Q ss_pred HHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcC----CCChHHH----HHH-HhCC--HHHHHHHHHHHHHhc
Q 005499 384 GLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFE----NNNADLF----FDL-EQRN--LSTALRYAKQYIDAT 452 (693)
Q Consensus 384 ~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~----~~l-~~~~--~~~A~~~~~~al~~~ 452 (693)
-+..|+..|...|+. ++|++.+.+...-+ +...+.+ .++ ..+. .+-..++-.-.+..+
T Consensus 506 ~y~~Li~LY~~kg~h-----------~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~ 574 (877)
T KOG2063|consen 506 KYRELIELYATKGMH-----------EKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKN 574 (877)
T ss_pred cHHHHHHHHHhccch-----------HHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccC
Confidence 378889999999999 99999999988633 2211111 111 2332 355556655556555
Q ss_pred CCCcHHHHH------------HHHHHHHHcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHh--------CChhHH
Q 005499 453 GGSVLKGWK------------LLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQ--------ALPMDA 512 (693)
Q Consensus 453 p~~~~~~~~------------~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~--------g~~~~A 512 (693)
|.....++. ....-+......+-++.+++.++..... .....+..++..|... ++-+++
T Consensus 575 p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~-~~~~lht~ll~ly~e~v~~~~~~~~kg~e~ 653 (877)
T KOG2063|consen 575 PEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRL-TSTLLHTVLLKLYLEKVLEQASTDGKGEEA 653 (877)
T ss_pred chhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccc-cchHHHHHHHHHHHHHHhhccCchhccccc
Confidence 543211111 1122345666778888999998877652 2444444555544432 223344
Q ss_pred HHH--HHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005499 513 IET--YRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARE 575 (693)
Q Consensus 513 ~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 575 (693)
.+. .++....-+.. +.+.... .....+. ...|...+.++.+.|+.++|+..|-..+.
T Consensus 654 ~E~~~rekl~~~l~~s-~~Y~p~~----~L~~~~~-~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 654 PETTVREKLLDFLESS-DLYDPQL----LLERLNG-DELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhhhHHHHHHHHhhhh-cccCcch----hhhhccc-hhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 444 22222221111 1110000 0111122 56777888888889999999988876664
No 472
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=37.08 E-value=2.5e+02 Score=23.60 Aligned_cols=46 Identities=9% Similarity=-0.014 Sum_probs=31.3
Q ss_pred HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHH
Q 005499 434 EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTD 481 (693)
Q Consensus 434 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~ 481 (693)
..+.....+.+++.++..++.++ ..+..+..+|... +..+.+..+.
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~~-~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 19 KRNLLEELIPYLESALKLNSENP-ALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred hCCcHHHHHHHHHHHHccCccch-hHHHHHHHHHHHH-CHHHHHHHHH
Confidence 34667788888888888777666 7777788887654 3444455544
No 473
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=34.47 E-value=97 Score=22.41 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=17.1
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHh
Q 005499 585 HTEGVMHEGCGQTHEALRAYINALL 609 (693)
Q Consensus 585 ~~lg~~~~~~g~~~~A~~~~~~al~ 609 (693)
...|.-.-..|++++|+.+|.+++.
T Consensus 9 ~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 9 IKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444555667888888888877765
No 474
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=34.10 E-value=88 Score=23.26 Aligned_cols=19 Identities=16% Similarity=0.135 Sum_probs=13.1
Q ss_pred HhCChhHHHHHHHHHHHHH
Q 005499 505 AQALPMDAIETYRYLLALV 523 (693)
Q Consensus 505 ~~g~~~~A~~~~~~~l~~~ 523 (693)
..|++++|+.+|..+++..
T Consensus 18 ~~g~y~eA~~lY~~ale~~ 36 (75)
T cd02684 18 QRGDAAAALSLYCSALQYF 36 (75)
T ss_pred HhccHHHHHHHHHHHHHHH
Confidence 3567777777777777654
No 475
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=34.05 E-value=1.4e+03 Score=31.27 Aligned_cols=134 Identities=16% Similarity=0.132 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCH-HHHH---HHHHHHHHCC-ChHHHHHHHHHHH-hh--CCCChhHH
Q 005499 547 FQVWHGLANLYSGLSHWKDVAICMGKARELKAYSA-EMLH---TEGVMHEGCG-QTHEALRAYINAL-LI--EPSYVPCK 618 (693)
Q Consensus 547 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~---~lg~~~~~~g-~~~~A~~~~~~al-~~--~p~~~~~~ 618 (693)
+.+.+..|.+....|-++.++..+.+...+..-.. ++.. .-+.++.... ....+++..+..= .. +....+..
T Consensus 2736 A~~in~fakvArkh~l~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff 2815 (3550)
T KOG0889|consen 2736 AWAINRFAKVARKHGLPDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFF 2815 (3550)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHH
Confidence 45556677777788888888887777766532221 2222 2223333322 2233333222110 00 11124556
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCC----hHHHHHHHHHHHhccc
Q 005499 619 VLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKD----DGR----IADAADCFQAASMLEE 682 (693)
Q Consensus 619 ~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~----~~~A~~~~~~al~l~p 682 (693)
...|....++|+.+ +|-..|..|++++...+.+|...|.-... .+. -..|+.||-+|.....
T Consensus 2816 ~lkG~f~~kL~~~e--eAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~ 2885 (3550)
T KOG0889|consen 2816 TLKGMFLEKLGKFE--EANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYN 2885 (3550)
T ss_pred HhhhHHHHHhcCcc--hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhcccc
Confidence 67799999999999 99999999999998889999887766543 222 2457777777776543
No 476
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=33.82 E-value=92 Score=23.17 Aligned_cols=17 Identities=6% Similarity=-0.218 Sum_probs=11.3
Q ss_pred hCCChHHHHHHHHHHHh
Q 005499 559 GLSHWKDVAICMGKARE 575 (693)
Q Consensus 559 ~~~~~~~A~~~~~~al~ 575 (693)
..|++++|+.+|..++.
T Consensus 18 ~~g~y~eA~~lY~~ale 34 (75)
T cd02684 18 QRGDAAAALSLYCSALQ 34 (75)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 55667777777766654
No 477
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=33.77 E-value=1.8e+02 Score=23.38 Aligned_cols=47 Identities=30% Similarity=0.232 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcC
Q 005499 308 RWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLAAKICSEDC 356 (693)
Q Consensus 308 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~ 356 (693)
.....|...+..|++..|.+.+.++.+. .+.....++..+.....+|
T Consensus 61 ~al~~Gl~al~~G~~~~A~k~~~~a~~~--~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 61 RALSRGLIALAEGDWQRAEKLLAKAAKL--SDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcC
Confidence 4556788888999999999999999773 2444444555555544444
No 478
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=33.53 E-value=1.2e+02 Score=33.64 Aligned_cols=108 Identities=15% Similarity=0.083 Sum_probs=78.9
Q ss_pred HHHHHHhCChhHHHHHHHHHHHHHHhhhhhcCCcccccchhhhcccHHHHHHHHHHHHH--hCCChHHHHHHHHHHHhhC
Q 005499 500 AKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYS--GLSHWKDVAICMGKARELK 577 (693)
Q Consensus 500 ~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~~~~A~~~~~~al~~~ 577 (693)
++.++..+++..+.--|..++.+-|.+. +.......+.+.++. ..|+|..++.-..-++...
T Consensus 60 ~n~~~~K~d~~~~~~~~~~~~~llp~~~----------------~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~ 123 (748)
T KOG4151|consen 60 GNKLFQKRDYEGAMFRYDCAIKLLPKDH----------------HVVATLRSNQASCYMQLGLGEYPKAIPECELALESQ 123 (748)
T ss_pred hhHHhhhhhhhccchhhhhhheeccccc----------------hhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhcc
Confidence 4455666677777666666666665332 334555666666655 4578888988888899999
Q ss_pred CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHH
Q 005499 578 AYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGS 623 (693)
Q Consensus 578 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 623 (693)
|....++...+.+|...+.++-|++...-.....|.+..+......
T Consensus 124 p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~e 169 (748)
T KOG4151|consen 124 PRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEE 169 (748)
T ss_pred chHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHH
Confidence 9999999999999999999999999877777888988655543333
No 479
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.41 E-value=8.2e+02 Score=28.37 Aligned_cols=89 Identities=13% Similarity=0.073 Sum_probs=49.8
Q ss_pred HhCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc--------CChHHHHHH--HHHHHh---h----cCC-----CC
Q 005499 434 EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQ--------QRFSEAEVV--TDAALD---E----TTK-----WE 491 (693)
Q Consensus 434 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~--------g~~~~A~~~--~~~al~---~----~p~-----~~ 491 (693)
.....+-++.+++.++..+.......+..++..|... ++-+++.+. .++... . +|+ ..
T Consensus 603 ~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~ 682 (877)
T KOG2063|consen 603 KSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFLESSDLYDPQLLLERLN 682 (877)
T ss_pred hhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHhhhhcccCcchhhhhcc
Confidence 5556666777777777655443313333444433321 222333333 222221 1 110 01
Q ss_pred chHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 005499 492 QGPILRLKAKLKIAQALPMDAIETYRYLLAL 522 (693)
Q Consensus 492 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 522 (693)
....|...+.++.++|+.++|+..|-..+..
T Consensus 683 ~~~l~ee~aill~rl~khe~aL~Iyv~~L~d 713 (877)
T KOG2063|consen 683 GDELYEERAILLGRLGKHEEALHIYVHELDD 713 (877)
T ss_pred chhHHHHHHHHHhhhhhHHHHHHHHHHHhcc
Confidence 3456788888999999999999998887764
No 480
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.27 E-value=5.1e+02 Score=25.91 Aligned_cols=37 Identities=8% Similarity=-0.147 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCCHHH
Q 005499 547 FQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEM 583 (693)
Q Consensus 547 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 583 (693)
+-+-+.-+..+.-.|++.++...+.++..+.|+....
T Consensus 213 pYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd~~~~ 249 (449)
T COG3014 213 PYVSYLSGLFYALNGDVNKGLGYLNEAYGISQDQSPF 249 (449)
T ss_pred HHHHHHHHHhcccCccHhHHHHHHHHHhccCchhhHH
Confidence 4455555666666777777777777777777664433
No 481
>PRK12798 chemotaxis protein; Reviewed
Probab=33.12 E-value=5.7e+02 Score=26.46 Aligned_cols=221 Identities=12% Similarity=-0.037 Sum_probs=122.6
Q ss_pred HHHhc-CCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcH
Q 005499 281 ALSLC-SQTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLAAKICSEDCHLA 359 (693)
Q Consensus 281 ~~~~~-g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~ 359 (693)
+|..+ |++......+.+-. .++.+.-..-|...+-.|+-.+|.+.+..+-... -|.....++.+.....-.....
T Consensus 89 iy~lSGGnP~vlr~L~~~d~---~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~-l~~~lg~~laLv~a~l~~~~dP 164 (421)
T PRK12798 89 IYLLSGGNPATLRKLLARDK---LGNFDQRLADGALAYLSGRGREARKLLAGVAPEY-LPAELGAYLALVQGNLMVATDP 164 (421)
T ss_pred hhHhcCCCHHHHHHHHHcCC---CChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhh-cCchhhhHHHHHHHHHhcccCH
Confidence 44444 44443333333322 2355555666777778899999999888876543 3444444554444444444444
Q ss_pred HHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcccCChHHHhHHHHHHHHHHHHHHhcCCCChH---HHHHH---
Q 005499 360 AEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNAD---LFFDL--- 433 (693)
Q Consensus 360 ~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~l--- 433 (693)
..|+.++..+--..|..--. -.++..--.+....|+. +++..+-.+-+......+- .+..+
T Consensus 165 ~~Al~~lD~aRLlaPGTLvE--EAALRRsi~la~~~g~~-----------~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~ 231 (421)
T PRK12798 165 ATALKLLDQARLLAPGTLVE--EAALRRSLFIAAQLGDA-----------DKFEALARNYLRRFRHSPYASQFAQRFVDL 231 (421)
T ss_pred HHHHHHHHHHHHhCCchHHH--HHHHHHhhHHHHhcCcH-----------HHHHHHHHHHHHHhccCchHHHHHHHHHHH
Confidence 49999999888777743211 23333333344566777 6655555444433333222 11111
Q ss_pred --HhCCHHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcCCC--CchHHHHHHHHHHHHhCC
Q 005499 434 --EQRNLSTALRYAKQYIDA-TGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKW--EQGPILRLKAKLKIAQAL 508 (693)
Q Consensus 434 --~~~~~~~A~~~~~~al~~-~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~l~~~~~~~g~ 508 (693)
...+-. -...+..++.. +|......|..++..-...|+.+-|...-++++.+.... +...+....+-...-..+
T Consensus 232 ~~~~~d~~-~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~ 310 (421)
T PRK12798 232 VVRLDDEI-RDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDD 310 (421)
T ss_pred HHhccccc-cHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCccc
Confidence 111111 11224444443 555544678888999999999999999999998876420 122333333444444456
Q ss_pred hhHHHHHHHHH
Q 005499 509 PMDAIETYRYL 519 (693)
Q Consensus 509 ~~~A~~~~~~~ 519 (693)
+++|++.+.++
T Consensus 311 ~~~al~~L~~I 321 (421)
T PRK12798 311 AESALEELSQI 321 (421)
T ss_pred HHHHHHHHhcC
Confidence 77776665544
No 482
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=33.10 E-value=3.2e+02 Score=28.47 Aligned_cols=27 Identities=19% Similarity=0.231 Sum_probs=21.8
Q ss_pred HHHHHHHHHHCCCcHHHHHHHHHHhhc
Q 005499 309 WNALALCYSAIGQNDAALNLLRKSLHK 335 (693)
Q Consensus 309 ~~~la~~~~~~g~~~~A~~~~~~~l~~ 335 (693)
....|.-++..|++.+|+..|+.++..
T Consensus 207 ~Lk~gyk~~t~gKF~eA~~~Fr~iL~~ 233 (422)
T PF06957_consen 207 RLKEGYKLFTAGKFEEAIEIFRSILHS 233 (422)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 355678888999999999999999874
No 483
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=32.01 E-value=2.5e+02 Score=30.56 Aligned_cols=80 Identities=9% Similarity=0.054 Sum_probs=60.0
Q ss_pred HhCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHH
Q 005499 558 SGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVAR 637 (693)
Q Consensus 558 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~ 637 (693)
.+....+.+....+.-+.-...++...+..+..+..-+..++|-.+|++.+..+|+ ..++..+.-+.+.|-.. .|.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~ 94 (578)
T PRK15490 19 KQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAK--DAQ 94 (578)
T ss_pred HHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhh--HHH
Confidence 34455666666666555444455666777788888889999999999999999888 67778888888888776 787
Q ss_pred HHHH
Q 005499 638 SLLS 641 (693)
Q Consensus 638 ~~~~ 641 (693)
..++
T Consensus 95 ~~~~ 98 (578)
T PRK15490 95 LILK 98 (578)
T ss_pred HHHH
Confidence 7776
No 484
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=31.90 E-value=3.2e+02 Score=28.17 Aligned_cols=27 Identities=30% Similarity=0.231 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHh
Q 005499 583 MLHTEGVMHEGCGQTHEALRAYINALL 609 (693)
Q Consensus 583 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 609 (693)
.+...|.+.+.+|+-++|.++++.+..
T Consensus 269 L~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 269 LELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 355678999999999999999998865
No 485
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.86 E-value=9.5e+02 Score=28.64 Aligned_cols=174 Identities=11% Similarity=0.058 Sum_probs=88.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCCCc-----------------------------HHHHHHHHHHHHHCCC
Q 005499 271 DPAVMEHLTYALSLCSQTSILAKQLEEIMPGVFLR-----------------------------SDRWNALALCYSAIGQ 321 (693)
Q Consensus 271 ~~~~~~~l~~~~~~~g~~~~a~~~~e~~l~~~~~~-----------------------------~~~~~~la~~~~~~g~ 321 (693)
.+.....+|.+|..+|...+|+.+|.++....... .+.+......+-..+-
T Consensus 919 k~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~ 998 (1480)
T KOG4521|consen 919 KPVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNH 998 (1480)
T ss_pred HHHHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhcc
Confidence 34455677888889999999999998776432111 1122333455555666
Q ss_pred cHHHHHHHHHHhhccCCCCCHHHHHHHHH---HHHhcCCcHHHHHHHHHHHHHhhcCCCcchhHhHHHHHHHHHhhhhcc
Q 005499 322 NDAALNLLRKSLHKHERPNDLMALLLAAK---ICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKV 398 (693)
Q Consensus 322 ~~~A~~~~~~~l~~~~~p~~~~~~~~~a~---~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~ 398 (693)
.+.+.++-.++++. .+++++..-..... .....+.+. +|.. ..+. .|. ...+-.++..+-.+++..|+.
T Consensus 999 ~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~-qAy~---ai~~-npd--serrrdcLRqlvivLfecg~l 1070 (1480)
T KOG4521|consen 999 AEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWF-QAYK---AILR-NPD--SERRRDCLRQLVIVLFECGEL 1070 (1480)
T ss_pred HHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHH-HHHH---HHHc-CCc--HHHHHHHHHHHHHHHHhccch
Confidence 66777777777765 34444433222222 223344444 4432 2222 343 233466777777777777776
Q ss_pred cCChHHH-hHHHHHHHH-HHHHHHhcCCCC----hHHHHHH--HhCCHHHHH-HHHHHHHHhc
Q 005499 399 SSSDYER-SRLQSEALK-SLDGASTFENNN----ADLFFDL--EQRNLSTAL-RYAKQYIDAT 452 (693)
Q Consensus 399 ~~~~~~~-~~~~~~A~~-~~~~al~~~p~~----~~~~~~l--~~~~~~~A~-~~~~~al~~~ 452 (693)
....... ..+.++-.. .++.+-...|-. ...++.. ..+++.+|- ..|+.+..+.
T Consensus 1071 ~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~ 1133 (1480)
T KOG4521|consen 1071 EALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLE 1133 (1480)
T ss_pred HHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhc
Confidence 2211111 111223333 344444333332 2222222 666766554 4456665554
No 486
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=31.41 E-value=78 Score=26.19 Aligned_cols=29 Identities=24% Similarity=0.197 Sum_probs=23.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcccC
Q 005499 655 YYLGLVHKDDGRIADAADCFQAASMLEES 683 (693)
Q Consensus 655 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 683 (693)
..+|..+...|++++|..+|-+|+...|+
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 35888888889999999999999988775
No 487
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=31.36 E-value=9.7e+02 Score=28.60 Aligned_cols=83 Identities=13% Similarity=0.107 Sum_probs=47.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHh----------hcCCCCchHHH---HHHHHHHHHhCChhHHHHHHHHHHHHHHhhhhh
Q 005499 463 LALVLSAQQRFSEAEVVTDAALD----------ETTKWEQGPIL---RLKAKLKIAQALPMDAIETYRYLLALVQAQRKS 529 (693)
Q Consensus 463 la~~~~~~g~~~~A~~~~~~al~----------~~p~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 529 (693)
-|..|...|+.++|+..++.+.. ..+ ....+. ..++.-+..++++-+|-+.....+...
T Consensus 958 Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~------ 1029 (1265)
T KOG1920|consen 958 AALMYERCGKLEKALKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDP------ 1029 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCH------
Confidence 35556666777777777665432 122 122222 566667777788877777666655431
Q ss_pred cCCcccccchhhhcccHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 005499 530 FGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKAR 574 (693)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 574 (693)
. .....|++...|.+|+.....+-
T Consensus 1030 ---------------~------~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1030 ---------------E------EAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred ---------------H------HHHHHHhhHhHHHHHHHHHHhcc
Confidence 1 12234556667888887665543
No 488
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=31.27 E-value=3.1e+02 Score=22.88 Aligned_cols=65 Identities=17% Similarity=0.134 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhcCCC----------------CCcHHHHHHHHHHHHHCCCcHHHHHHHHHHhhc
Q 005499 272 PAVMEHLTYALSLCSQTSILAKQLEEIMPGV----------------FLRSDRWNALALCYSAIGQNDAALNLLRKSLHK 335 (693)
Q Consensus 272 ~~~~~~l~~~~~~~g~~~~a~~~~e~~l~~~----------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 335 (693)
.+++..+..++.+.|+.+....++++.-..+ .++..+...++.++...|++..|++++....+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 4567778888999999999888887664322 134667888899999999999999999988875
Q ss_pred c
Q 005499 336 H 336 (693)
Q Consensus 336 ~ 336 (693)
.
T Consensus 82 Y 82 (126)
T PF12921_consen 82 Y 82 (126)
T ss_pred c
Confidence 4
No 489
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=31.24 E-value=2.4e+02 Score=30.63 Aligned_cols=81 Identities=12% Similarity=0.045 Sum_probs=61.5
Q ss_pred HHCCChHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHH
Q 005499 592 EGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAA 671 (693)
Q Consensus 592 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 671 (693)
.+....+.+....+.-+.-...........+..+...+..+ .|-.+|++.+..+|+ ..++..+.-+.+.|-...|.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 94 (578)
T PRK15490 19 KQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETE--RAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQ 94 (578)
T ss_pred HHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhH--hHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHH
Confidence 34445566666666555444445566777788888899999 999999999999998 67788888888888888888
Q ss_pred HHHHH
Q 005499 672 DCFQA 676 (693)
Q Consensus 672 ~~~~~ 676 (693)
..+++
T Consensus 95 ~~~~~ 99 (578)
T PRK15490 95 LILKK 99 (578)
T ss_pred HHHHH
Confidence 77763
No 490
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=31.13 E-value=1.1e+02 Score=22.58 Aligned_cols=18 Identities=11% Similarity=0.141 Sum_probs=11.7
Q ss_pred HhCCChHHHHHHHHHHHh
Q 005499 558 SGLSHWKDVAICMGKARE 575 (693)
Q Consensus 558 ~~~~~~~~A~~~~~~al~ 575 (693)
-..|++++|+.+|.+++.
T Consensus 17 D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 17 DNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 356777777777766554
No 491
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=30.90 E-value=7.8e+02 Score=27.38 Aligned_cols=27 Identities=7% Similarity=0.014 Sum_probs=16.7
Q ss_pred HHHhCCChHHHHHHHHHHHhhCCCCHHH
Q 005499 556 LYSGLSHWKDVAICMGKARELKAYSAEM 583 (693)
Q Consensus 556 ~~~~~~~~~~A~~~~~~al~~~p~~~~~ 583 (693)
-++..|+|++|++.+++. .+-|.++..
T Consensus 514 ~~~~~g~~~~AL~~i~~L-~liP~~~~~ 540 (613)
T PF04097_consen 514 DLYHAGQYEQALDIIEKL-DLIPLDPSE 540 (613)
T ss_dssp HHHHTT-HHHHHHHHHHT-T-S-S-HHH
T ss_pred HHHHcCCHHHHHHHHHhC-CCCCCCHHH
Confidence 456889999999988874 466755443
No 492
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=30.88 E-value=4.7e+02 Score=24.77 Aligned_cols=46 Identities=13% Similarity=0.026 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhh-----CCCCHH---HHHHHHHH-HHHCCChHHHHHHHHHHHh
Q 005499 564 KDVAICMGKAREL-----KAYSAE---MLHTEGVM-HEGCGQTHEALRAYINALL 609 (693)
Q Consensus 564 ~~A~~~~~~al~~-----~p~~~~---~~~~lg~~-~~~~g~~~~A~~~~~~al~ 609 (693)
+.|...|++|+.+ .|.+|. ...+.+.. |...|+.++|+...++++.
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4455555555432 344443 22233333 3446777777776666654
No 493
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=30.40 E-value=61 Score=32.79 Aligned_cols=43 Identities=19% Similarity=0.247 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC------------hHHHHHHHHHH
Q 005499 633 LPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGR------------IADAADCFQAA 677 (693)
Q Consensus 633 l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~------------~~~A~~~~~~a 677 (693)
+..|+++++++.. .++|..|..+|.++..+|+ |.+|...+.+|
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kA 388 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKA 388 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHH
No 494
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=30.26 E-value=5.5e+02 Score=25.40 Aligned_cols=51 Identities=18% Similarity=-0.023 Sum_probs=36.7
Q ss_pred HcCChHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q 005499 469 AQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLAL 522 (693)
Q Consensus 469 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 522 (693)
..+++.+.++.+++.+..+| --.+.++..+.++.+.| ++.+......-+..
T Consensus 111 ~~~~~~~Ll~~~E~sl~~~p--fWLDgq~~~~qal~~lG-~~~~a~aI~~el~~ 161 (301)
T TIGR03362 111 AQADWAALLQRVEQSLSLAP--FWLDGQRLSAQALERLG-YAAVAQAIRDELAA 161 (301)
T ss_pred hCCCHHHHHHHHHHHHHhCc--hhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
Confidence 56677888888888888888 56677778888888888 45555554444433
No 495
>PRK10316 hypothetical protein; Provisional
Probab=30.13 E-value=84 Score=28.56 Aligned_cols=58 Identities=14% Similarity=0.098 Sum_probs=45.4
Q ss_pred cchhhhhcccCCcCHHHHHHHhhhcc-CCC---------HHHHHHHHHHHHhhcCCHHHHHhhhccCC
Q 005499 25 MKAAEVEAKLDEGNIQEAESSLREGL-SLN---------FEEARALLGRLEYQRGNVEGALRVFDGID 82 (693)
Q Consensus 25 ~~~~~~~~~~~~g~~~~A~~~~~~~l-~~~---------~~~a~~~lg~~~~~~g~~~~A~~~~~~~~ 82 (693)
+-++.++..+..|+.++|...+|-+- +.+ ....-..-+......|+|.+|-..+.++.
T Consensus 129 ~Ava~AN~~Lk~Gd~~~A~e~LklAgvdv~~~~al~PL~qT~~~V~~A~~ll~~gkyyeA~~aLk~a~ 196 (209)
T PRK10316 129 AAIKIANEKMAKGDKKGAMEELRLAGVGVMENQYLMPLKQTRNAVADAQKLLDKGKYYEANLALKGAE 196 (209)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHcCcchhhHhHhcCchhhHHHHHHHHHHHhCCChhHHHHHHHhhc
Confidence 34678999999999999999999765 333 33344455778889999999999998874
No 496
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=29.79 E-value=82 Score=23.28 Aligned_cols=19 Identities=26% Similarity=0.156 Sum_probs=13.6
Q ss_pred HHHhCCCChHHHHHHHHHHHh
Q 005499 625 FSKLGPKALPVARSLLSDALR 645 (693)
Q Consensus 625 ~~~~g~~~l~~A~~~~~~al~ 645 (693)
.-..|+++ +|+.+|..+++
T Consensus 16 ~D~~g~~~--~Al~~Y~~a~e 34 (75)
T cd02656 16 EDEDGNYE--EALELYKEALD 34 (75)
T ss_pred HHHcCCHH--HHHHHHHHHHH
Confidence 34458877 88888877765
No 497
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=29.65 E-value=1e+02 Score=34.16 Aligned_cols=104 Identities=14% Similarity=0.055 Sum_probs=81.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHH--CCChHHHHHHHHHHHhhCCCChhHHHHHHHH
Q 005499 551 HGLANLYSGLSHWKDVAICMGKARELKAYS----AEMLHTEGVMHEG--CGQTHEALRAYINALLIEPSYVPCKVLVGSL 624 (693)
Q Consensus 551 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 624 (693)
..-++..++.+++.++..-|..++.+-|.+ .....+.+.++.. .|++..++.-..-++...|....++...+.+
T Consensus 57 ~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~ 136 (748)
T KOG4151|consen 57 KEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARK 136 (748)
T ss_pred HhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhH
Confidence 345778888899999988888888887743 3345556666554 5688899999999999999999999999999
Q ss_pred HHHhCCCChHHHHHHHHHHHhhCCCCHHHHHH
Q 005499 625 FSKLGPKALPVARSLLSDALRIEPTNRKAWYY 656 (693)
Q Consensus 625 ~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~ 656 (693)
|...++.+ -|.+.+.-.....|.++.+...
T Consensus 137 y~al~k~d--~a~rdl~i~~~~~p~~~~~~ei 166 (748)
T KOG4151|consen 137 YEALNKLD--LAVRDLRIVEKMDPSNVSASEI 166 (748)
T ss_pred HHHHHHHH--HHHHHHHHHhcCCCCcchHHHH
Confidence 99999877 8888887777888988655443
No 498
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=28.92 E-value=5.1e+02 Score=25.24 Aligned_cols=113 Identities=10% Similarity=-0.008 Sum_probs=69.4
Q ss_pred HHHHhCCChHHHHHHHHHHHhhCCC--CHHHHHHHHHHH---HHCCCh----HHHHHHHHHHHhhCCCChhHHHHHHHHH
Q 005499 555 NLYSGLSHWKDVAICMGKARELKAY--SAEMLHTEGVMH---EGCGQT----HEALRAYINALLIEPSYVPCKVLVGSLF 625 (693)
Q Consensus 555 ~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~---~~~g~~----~~A~~~~~~al~~~p~~~~~~~~la~~~ 625 (693)
..+...++|++=...+.+....... ..+..+..+... ...... ..-.+.++.-++..|++..++..+|..+
T Consensus 8 r~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~~ 87 (277)
T PF13226_consen 8 RELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMYW 87 (277)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 4566788888888888877644322 111112222111 111111 1356667777888999988888888877
Q ss_pred HHhC------CC----C----------hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCh
Q 005499 626 SKLG------PK----A----------LPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRI 667 (693)
Q Consensus 626 ~~~g------~~----~----------l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 667 (693)
.... .+ . .+.|...+.+++.++|....+...+-.+-...|..
T Consensus 88 ~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP 149 (277)
T PF13226_consen 88 VHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEP 149 (277)
T ss_pred HHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCc
Confidence 6531 11 1 23588888999999999888777776666555553
No 499
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=28.49 E-value=70 Score=29.95 Aligned_cols=20 Identities=10% Similarity=0.001 Sum_probs=12.3
Q ss_pred CCChHHHHHHHHHHHhhCCC
Q 005499 560 LSHWKDVAICMGKARELKAY 579 (693)
Q Consensus 560 ~~~~~~A~~~~~~al~~~p~ 579 (693)
.++...|+.++++|+.++|.
T Consensus 191 ~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 191 AETLQLALALLQRAFQLNDK 210 (230)
T ss_pred cccHHHHHHHHHHHHHhCCC
Confidence 34556666666666666654
No 500
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.41 E-value=5.9e+02 Score=25.21 Aligned_cols=92 Identities=14% Similarity=0.047 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHHCCChHHHHHHHHHHHh--hCCCChh
Q 005499 547 FQVWHGLANLYSGLSHWKDVAICMGKARELKAY--------SAEMLHTEGVMHEGCGQTHEALRAYINALL--IEPSYVP 616 (693)
Q Consensus 547 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~ 616 (693)
..+...+|.+|.+.++|..|-..+...- .+.. ....+..+|.+|...++..+|..+..++-- .+..+..
T Consensus 103 ~~irl~LAsiYE~Eq~~~~aaq~L~~I~-~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~ 181 (399)
T KOG1497|consen 103 ASIRLHLASIYEKEQNWRDAAQVLVGIP-LDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQ 181 (399)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhccC-cccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHH
Confidence 5667889999999999999988765432 2211 123577899999999999999888887632 3345555
Q ss_pred HHHHHHHHHH----HhCCCChHHHHHHH
Q 005499 617 CKVLVGSLFS----KLGPKALPVARSLL 640 (693)
Q Consensus 617 ~~~~la~~~~----~~g~~~l~~A~~~~ 640 (693)
....+-.||. ..+++- +.|..+|
T Consensus 182 Lqie~kvc~ARvlD~krkFl-EAAqrYy 208 (399)
T KOG1497|consen 182 LQIEYKVCYARVLDYKRKFL-EAAQRYY 208 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 5544444444 445553 3444444
Done!