Query 005499
Match_columns 693
No_of_seqs 897 out of 4384
Neff 10.7
Searched_HMMs 29240
Date Tue Mar 26 18:57:48 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005499.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2004-2008//hhsearch_pdb/005499hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 1.0 1 1 318.8 45.4 292 353-687 283-586 (597)
2 2xpi_A Anaphase-promoting comp 1.0 1 1 312.2 42.0 501 22-625 83-594 (597)
3 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 305.5 40.4 354 269-666 30-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 303.3 44.7 367 278-688 5-376 (388)
5 2gw1_A Mitochondrial precursor 1.0 1 1 281.1 35.0 284 303-621 183-489 (514)
6 3fp2_A TPR repeat-containing p 1.0 1 1 277.4 34.7 302 282-620 170-501 (537)
7 3fp2_A TPR repeat-containing p 1.0 1 1 267.5 38.2 250 410-685 219-496 (537)
8 2gw1_A Mitochondrial precursor 1.0 1 1 267.1 36.8 459 54-658 5-490 (514)
9 2y4t_A DNAJ homolog subfamily 1.0 1 1 261.6 38.2 368 265-669 19-443 (450)
10 2y4t_A DNAJ homolog subfamily 1.0 1 1 258.7 37.4 365 290-686 10-416 (450)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=318.84 Aligned_cols=292 Identities=15% Similarity=0.092 Sum_probs=225.8
Q ss_pred HHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 75399689999999999871059874034768999997886410346776887498999999999977429887478888
Q 005499 353 SEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNADLFFD 432 (693)
Q Consensus 353 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 432 (693)
...+++. +|...+++++.. | .. ...+..++..+...|++ ++|+..|++++..+|.+..++..
T Consensus 283 ~~~g~~~-~A~~~~~~~~~~-~---~~--~~~~~~l~~~~~~~g~~-----------~~A~~~~~~~~~~~~~~~~~~~~ 344 (597)
T 2xpi_A 283 SHEDELR-RAEDYLSSINGL-E---KS--SDLLLCKADTLFVRSRF-----------IDVLAITTKILEIDPYNLDVYPL 344 (597)
T ss_dssp TTHHHHH-HHHHHHHTSTTG-G---GC--HHHHHHHHHHHHHTTCH-----------HHHHHHHHHHHHHCTTCCTTHHH
T ss_pred CCCCHHH-HHHHHHHHHHCC-C---CH--HHHHHHHHHHHHHHCCH-----------HHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 0731399-999999876438-8---30--99999999999984689-----------99999999999729553799999
Q ss_pred H-----HHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 9-----71899899999999999639992999999999999829947999999999842379885389999999999909
Q 005499 433 L-----EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQA 507 (693)
Q Consensus 433 l-----~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g 507 (693)
+ ..|++++|+..++++++..|.+. .++..++.++...|++++|+..|+++++..| .+...|..++.++...|
T Consensus 345 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g 421 (597)
T 2xpi_A 345 HLASLHESGEKNKLYLISNDLVDRHPEKA-VTWLAVGIYYLCVNKISEARRYFSKSSTMDP--QFGPAWIGFAHSFAIEG 421 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTSH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHCC
T ss_conf 99999982777799999999985183547-9999999999983569999999999987297--77899999999999757
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 93699999999999999515420973222200010023899999999999809995899999999882087999999999
Q 005499 508 LPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTE 587 (693)
Q Consensus 508 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 587 (693)
++++|+..|++++...|. +..+|..++.++...|++++|+..|++++...|.++.++..+
T Consensus 422 ~~~~A~~~~~~~~~~~~~--------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 481 (597)
T 2xpi_A 422 EHDQAISAYTTAARLFQG--------------------THLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNEL 481 (597)
T ss_dssp CHHHHHHHHHHHHHTTTT--------------------CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCC--------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 779999999999986813--------------------438999999999985799999999999998488876799999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHH------CCCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 99999789948999999999940------9999-0689999999998099996999999999996099999999999999
Q 005499 588 GVMHEGCGQTHEALRAYINALLI------EPSY-VPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLV 660 (693)
Q Consensus 588 g~~~~~~g~~~~A~~~~~~al~~------~p~~-~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~ 660 (693)
|.++...|++++|+..|++++.. +|+. ..++..++.++...|+++ +|+..++++++..|+++.+|..+|.+
T Consensus 482 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~p~~~~~~~~l~~~ 559 (597)
T 2xpi_A 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYD--AAIDALNQGLLLSTNDANVHTAIALV 559 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9999981899999999999998532345453549999999999999804799--99999999997389973899999999
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 997599279999999997111589977
Q 005499 661 HKDDGRIADAADCFQAASMLEESDPIE 687 (693)
Q Consensus 661 ~~~~g~~~~A~~~~~~al~l~p~~~~~ 687 (693)
|...|++++|...|+++++++|+++..
T Consensus 560 ~~~~g~~~~A~~~~~~~l~~~p~~~~~ 586 (597)
T 2xpi_A 560 YLHKKIPGLAITHLHESLAISPNEIMA 586 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHCCHHHHHHHHHHHHHCCCCCHHH
T ss_conf 998178999999999997208887489
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=312.19 Aligned_cols=501 Identities=14% Similarity=0.035 Sum_probs=331.2
Q ss_pred CCCCCHHHHHCCCCCCCHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHCCCCCHHHHH
Q ss_conf 76554021210347768798898756206--9998999998778984117988897422168840122210555001223
Q 005499 22 GACMKAAEVEAKLDEGNIQEAESSLREGL--SLNFEEARALLGRLEYQRGNVEGALRVFDGIDLHAAIQRLQPSFSEKSA 99 (693)
Q Consensus 22 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l--~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (693)
.+..+...+..++..|++++|+..|++++ .|++ .++..+|.++...|++++|+..|+++... +..
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~--------- 149 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLY---NRS--------- 149 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGG---GTC---------
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHCCCHHHHHHHHHHHHCC---CCC---------
T ss_conf 99999999999987458347999999999608993-57999999999747699999999987335---456---------
Q ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH---HHCCCCCHHHHHHHHHHHHHH
Q ss_conf 20037888887643155889999999998877673178579999999999999986---425999802321389999999
Q 005499 100 SKKCRSRSDSHVSVSQHAASLVLEAIYLKAKSLQKLGRLTEAANECKSVLDAVERI---FQQGIPDAQVDNRLQETVSRA 176 (693)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 176 (693)
..+++.+|.+|.+.|++++|+..|++........ ......... .+.-..+
T Consensus 150 ----------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 202 (597)
T 2xpi_A 150 ----------------------SACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGG-----IKLEASM 202 (597)
T ss_dssp ----------------------HHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSS-----CCHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-----CCHHHHH
T ss_conf ----------------------5089999999998866999999984248863223234334321123-----5125899
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 86669999620992689999999750037889267789989989986312655699987678897545898169999999
Q 005499 177 VELLPELWKQVGCDHDALAAYRRAVLSQWNLDNECCARIQKRFAVFLLHSGVEAGPPSLGSQVEGSYAPKNNLEEAILLL 256 (693)
Q Consensus 177 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 256 (693)
+..++.+|.+.|++++|+..|++++..+|. .... ...+... +...+..+.+....
T Consensus 203 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~---~~~l~~~--------------------~~~~~~~~~~~~~~ 257 (597)
T 2xpi_A 203 CYLRGQVYTNLSNFDRAKECYKEALMVDAK--CYEA---FDQLVSN--------------------HLLTADEEWDLVLK 257 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHH---HHHHHHT--------------------TCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCH--HHHH---HHHHHHH--------------------HCCCCHHHHHHHHH
T ss_conf 999889999839989999999999972932--5699---9999985--------------------03461567899986
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf 99989976137999578999999999932898999999994369999967899999999998799289999999986123
Q 005499 257 LILMKKYHLGKIKWDPAVMEHLTYALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKH 336 (693)
Q Consensus 257 ~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 336 (693)
................++..++..|...|+++.|.+.|++++.. +.+...|+.++..+...|++++|+..|++++.
T Consensus 258 -l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 333 (597)
T 2xpi_A 258 -LNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILE-- 333 (597)
T ss_dssp -SCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred -CCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH--
T ss_conf -57742344308899999999999980731399999999876438-83099999999999984689999999999997--
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 89999799999999997539968999999999987105987403476899999788641034677688749899999999
Q 005499 337 ERPNDLMALLLAAKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSL 416 (693)
Q Consensus 337 ~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~ 416 (693)
.+|++...+..++.++...++.. +|...+++++...| .. ...+..+|.++...|++ ++|+..|
T Consensus 334 ~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~---~~--~~~~~~l~~~~~~~g~~-----------~~A~~~~ 396 (597)
T 2xpi_A 334 IDPYNLDVYPLHLASLHESGEKN-KLYLISNDLVDRHP---EK--AVTWLAVGIYYLCVNKI-----------SEARRYF 396 (597)
T ss_dssp HCTTCCTTHHHHHHHHHHHTCHH-HHHHHHHHHHHHCT---TS--HHHHHHHHHHHHHTTCH-----------HHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHCC---CC--HHHHHHHHHHHHHHCCH-----------HHHHHHH
T ss_conf 29553799999999999827777-99999999985183---54--79999999999983569-----------9999999
Q ss_pred HHHHHCCCCCHHHHHHH-----HHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 99774298874788889-----7189989999999999963999299999999999982994799999999984237988
Q 005499 417 DGASTFENNNADLFFDL-----EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWE 491 (693)
Q Consensus 417 ~~al~~~p~~~~~~~~l-----~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 491 (693)
++++..+|.+..++..+ ..|++++|+..|+++++..|.+. .++..++.++...|++++|+..++++++..| .
T Consensus 397 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~ 473 (597)
T 2xpi_A 397 SKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTH-LPYLFLGMQHMQLGNILLANEYLQSSYALFQ--Y 473 (597)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCS-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC--C
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--C
T ss_conf 999872977789999999999975777999999999998681343-8999999999985799999999999998488--8
Q ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCH-HHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 5389999999999909936999999999999995154209732222000100238-999999999998099958999999
Q 005499 492 QGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNE-FQVWHGLANLYSGLSHWKDVAICM 570 (693)
Q Consensus 492 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~ 570 (693)
++..+..++.++...|++++|+..|+++++..|... ..|.. ..+|..+|.++...|++++|+..+
T Consensus 474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~ 539 (597)
T 2xpi_A 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQ--------------SNEKPWAATWANLGHAYRKLKMYDAAIDAL 539 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--------------CCSGGGHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC--------------CCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 767999999999981899999999999998532345--------------453549999999999999804799999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 9988208799999999999999789948999999999940999906899999999
Q 005499 571 GKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLF 625 (693)
Q Consensus 571 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 625 (693)
++++...|+++.++..+|.++...|++++|+..|+++++++|++..++..++.+|
T Consensus 540 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 540 NQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 9999738997389999999999817899999999999720888748999999987
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=305.54 Aligned_cols=354 Identities=20% Similarity=0.167 Sum_probs=285.9
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 99578999999999932898999999994369999967899999999998799289999999986123899997999999
Q 005499 269 KWDPAVMEHLTYALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLA 348 (693)
Q Consensus 269 p~~~~~~~~l~~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~ 348 (693)
|.++.++..++..+...|+++.+...++++++..|.+...|+.+|.++...|++++|+..|++++. .+|++..++..+
T Consensus 30 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l 107 (388)
T 1w3b_A 30 PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALR--LKPDFIDGYINL 107 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_conf 788999999999999868999999999999761978669999999999877999999999999987--496539999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 99997539968999999999987105987403476899999788641034677688749899999999997742988747
Q 005499 349 AKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNAD 428 (693)
Q Consensus 349 a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 428 (693)
+.++...+++. +|+..+++++...| .. ..++..+|.++...|++ ++|+..|++++..+|++..
T Consensus 108 ~~~~~~~g~~~-~A~~~~~~al~~~p---~~--~~~~~~l~~~~~~~g~~-----------~~A~~~~~~al~~~p~~~~ 170 (388)
T 1w3b_A 108 AAALVAAGDME-GAVQAYVSALQYNP---DL--YCVRSDLGNLLKALGRL-----------EEAKACYLKAIETQPNFAV 170 (388)
T ss_dssp HHHHHHHSCSS-HHHHHHHHHHHHCT---TC--THHHHHHHHHHHTTSCH-----------HHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHCCCHH-HHHHHHHHHHHHCC---CC--HHHHHHHHHHHHHCCCH-----------HHHHHHHHHHHHHCCCCHH
T ss_conf 99999858999-99999999997598---96--89999999999984689-----------9999999999872989789
Q ss_pred HHHHH-----HHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 88889-----7189989999999999963999299999999999982994799999999984237988538999999999
Q 005499 429 LFFDL-----EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLK 503 (693)
Q Consensus 429 ~~~~l-----~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~ 503 (693)
++..+ ..|++++|+..++++++.+|+.. .++..+|.++...|++++|+..+++++...| ++..++..+|.++
T Consensus 171 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~ 247 (388)
T 1w3b_A 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFL-DAYINLGNVLKEARIFDRAVAAYLRALSLSP--NHAVVHGNLACVY 247 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT--TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHH
T ss_conf 999999999985999999999999985598867-9999999999985789999999999985296--8789999999999
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 99099369999999999999951542097322220001002389999999999980999589999999988208799999
Q 005499 504 IAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEM 583 (693)
Q Consensus 504 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 583 (693)
...|++++|+..++++++..| ..+.++..+|.++...|++++|+..+++++...|.++.+
T Consensus 248 ~~~g~~~~A~~~~~~al~~~p--------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 307 (388)
T 1w3b_A 248 YEQGLIDLAIDTYRRAIELQP--------------------HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS 307 (388)
T ss_dssp HHTTCHHHHHHHHHHHHHTCS--------------------SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCC--------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf 986889999999999986499--------------------988999999999998699799999999998649444999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 99999999978994899999999994099990689999999998099996999999999996099999999999999997
Q 005499 584 LHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKD 663 (693)
Q Consensus 584 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 663 (693)
+..+|.++...|++++|+..+++++...|++..++..+|.++...|+++ +|+..++++++..|+++.+++.+|.++..
T Consensus 308 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~--~A~~~~~~a~~~~p~~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 308 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ--EALMHYKEAIRISPTFADAYSNMGNTLKE 385 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCH--HHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 9999999998489999999999998609873999977999999868889--99999999986199978999859999987
Q ss_pred CCC
Q ss_conf 599
Q 005499 664 DGR 666 (693)
Q Consensus 664 ~g~ 666 (693)
+|+
T Consensus 386 ~~~ 388 (388)
T 1w3b_A 386 MQD 388 (388)
T ss_dssp TCC
T ss_pred CCC
T ss_conf 459
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=303.25 Aligned_cols=367 Identities=16% Similarity=0.063 Sum_probs=293.1
Q ss_pred HHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99999932898999999994369999967899999999998799289999999986123899997999999999975399
Q 005499 278 LTYALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLAAKICSEDCH 357 (693)
Q Consensus 278 l~~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~ 357 (693)
++..+...|+++.|...+++++...|++...+..++.++...|++++|...+++++. .+|.+..++..+|.++...++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~--~~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK--QNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHCCC
T ss_conf 799998779999999999999984978899999999999986899999999999976--197866999999999987799
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH----
Q ss_conf 6899999999998710598740347689999978864103467768874989999999999774298874788889----
Q 005499 358 LAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNADLFFDL---- 433 (693)
Q Consensus 358 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l---- 433 (693)
+. +|+..+++++...| .. ..++..+|.++...|++ ++|+..|++++..+|++..++..+
T Consensus 83 ~~-~A~~~~~~al~~~p---~~--~~~~~~l~~~~~~~g~~-----------~~A~~~~~~al~~~p~~~~~~~~l~~~~ 145 (388)
T 1w3b_A 83 LQ-EAIEHYRHALRLKP---DF--IDGYINLAAALVAAGDM-----------EGAVQAYVSALQYNPDLYCVRSDLGNLL 145 (388)
T ss_dssp HH-HHHHHHHHHHHHCT---TC--HHHHHHHHHHHHHHSCS-----------SHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHCCC---CH--HHHHHHHHHHHHHCCCH-----------HHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 99-99999999987496---53--99999999999985899-----------9999999999975989689999999999
Q ss_pred -HHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHH
Q ss_conf -7189989999999999963999299999999999982994799999999984237988538999999999990993699
Q 005499 434 -EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDA 512 (693)
Q Consensus 434 -~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A 512 (693)
..|++++|+..+++++...|++. .++..+|.++...|++++|+..+++++...| ++...+..+|.++...|++++|
T Consensus 146 ~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~A 222 (388)
T 1w3b_A 146 KALGRLEEAKACYLKAIETQPNFA-VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP--NFLDAYINLGNVLKEARIFDRA 222 (388)
T ss_dssp HTTSCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTTTCTTHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHCCCHHHH
T ss_conf 984689999999999987298978-9999999999985999999999999985598--8679999999999985789999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 99999999999951542097322220001002389999999999980999589999999988208799999999999999
Q 005499 513 IETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHE 592 (693)
Q Consensus 513 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 592 (693)
+..+++++...|. +..++..+|.++...|++++|+..+++++...|.++.++..+|.++.
T Consensus 223 ~~~~~~al~~~p~--------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 282 (388)
T 1w3b_A 223 VAAYLRALSLSPN--------------------HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALK 282 (388)
T ss_dssp HHHHHHHHHHCTT--------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC--------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 9999999852968--------------------78999999999998688999999999998649998899999999999
Q ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 78994899999999994099990689999999998099996999999999996099999999999999997599279999
Q 005499 593 GCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAAD 672 (693)
Q Consensus 593 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 672 (693)
..|++++|+..|++++...|.+..++..++.++...|+++ +|+..++++++..|++..++..+|.++...|++++|+.
T Consensus 283 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 360 (388)
T 1w3b_A 283 EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIE--EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 360 (388)
T ss_dssp HHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH--HHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 8699799999999998649444999999999999848999--99999999986098739999779999998688899999
Q ss_pred HHHHHHHCCCCCCCCC
Q ss_conf 9999971115899776
Q 005499 673 CFQAASMLEESDPIES 688 (693)
Q Consensus 673 ~~~~al~l~p~~~~~~ 688 (693)
.|++++++.|+++...
T Consensus 361 ~~~~a~~~~p~~~~a~ 376 (388)
T 1w3b_A 361 HYKEAIRISPTFADAY 376 (388)
T ss_dssp HHHHHHTTCTTCHHHH
T ss_pred HHHHHHHHCCCCHHHH
T ss_conf 9999986199978999
No 5
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=281.09 Aligned_cols=284 Identities=13% Similarity=0.071 Sum_probs=138.8
Q ss_pred CCCHHHHHHHHHHHHH---CCCCHHHHHHHHHHHH-----CCCCCCC-------HHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 9967899999999998---7992899999999861-----2389999-------79999999999753996899999999
Q 005499 303 FLRSDRWNALALCYSA---IGQNDAALNLLRKSLH-----KHERPND-------LMALLLAAKICSEDCHLAAEGIQYAR 367 (693)
Q Consensus 303 ~~~~~~~~~la~~~~~---~g~~~~A~~~~~~~l~-----~~~~p~~-------~~~~~~~a~~~~~~~~~~~~A~~~~~ 367 (693)
+.+...++..|.+++. .|++++|+..+++++. ...+|++ ...+..+|.++...+++. +|+..++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~A~~~~~ 261 (514)
T 2gw1_A 183 SNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPL-GAHEDIK 261 (514)
T ss_dssp SCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHH-HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHH-HHHHHHH
T ss_conf 958889999899998762332299999999999988665422381001148278999999999999878999-9999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH-----HHCCHHHHH
Q ss_conf 998710598740347689999978864103467768874989999999999774298874788889-----718998999
Q 005499 368 TALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNADLFFDL-----EQRNLSTAL 442 (693)
Q Consensus 368 ~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-----~~~~~~~A~ 442 (693)
+++...| . ..++..+|.++...|++ ++|+..+++++..+|.+..++..+ ..|++++|+
T Consensus 262 ~~l~~~~---~---~~~~~~l~~~~~~~~~~-----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 324 (514)
T 2gw1_A 262 KAIELFP---R---VNSYIYMALIMADRNDS-----------TEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAG 324 (514)
T ss_dssp HHHHHCC---C---HHHHHHHHHHHHTSSCC-----------TTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHH
T ss_pred HHHHHCC---C---HHHHHHHHHHHHHCCCH-----------HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHH
T ss_conf 9986386---4---89999999999988889-----------99999999986138677899999999999807799999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 99999999639992999999999999829947999999999842379885389999999999909936999999999999
Q 005499 443 RYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLAL 522 (693)
Q Consensus 443 ~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 522 (693)
..+++++...|.+. .++..+|.++...|++++|+..+++++...| .+..++..+|.++...|++++|+..+++++..
T Consensus 325 ~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 325 KDFDKAKELDPENI-FPYIQLACLAYRENKFDDCETLFSEAKRKFP--EAPEVPNFFAEILTDKNDFDKALKQYDLAIEL 401 (514)
T ss_dssp HHHHHHHHTCSSCS-HHHHHHHHHTTTTTCHHHHHHHHHHHHHHST--TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCHHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99999987385028-9999999999986899999999999998754--67789999999998788999999999999976
Q ss_pred HHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 9951542097322220001002389999999999980---9995899999999882087999999999999997899489
Q 005499 523 VQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSG---LSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHE 599 (693)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 599 (693)
.|..+.. .....++..+|.++.. .|++++|+..+++++...|.++.++..+|.++...|++++
T Consensus 402 ~~~~~~~--------------~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 467 (514)
T 2gw1_A 402 ENKLDGI--------------YVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDE 467 (514)
T ss_dssp HHTSSSC--------------SSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHCCCHH--------------HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHH
T ss_conf 1233217--------------89999999999998663325888999999999987585558999999999998257999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 9999999994099990689999
Q 005499 600 ALRAYINALLIEPSYVPCKVLV 621 (693)
Q Consensus 600 A~~~~~~al~~~p~~~~~~~~l 621 (693)
|+..|++++.++|++..++..+
T Consensus 468 A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 468 AITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHH
T ss_conf 9999999987661468899999
No 6
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=277.38 Aligned_cols=302 Identities=13% Similarity=0.053 Sum_probs=212.1
Q ss_pred HHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHH--------HHCCCCHHHHHHHHHHHHCCCCCCCHH-------HHH
Q ss_conf 99328989999999943699999678999999999--------987992899999999861238999979-------999
Q 005499 282 LSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCY--------SAIGQNDAALNLLRKSLHKHERPNDLM-------ALL 346 (693)
Q Consensus 282 ~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~--------~~~g~~~~A~~~~~~~l~~~~~p~~~~-------~~~ 346 (693)
+....+...+...+.+.....+.....+..++..+ ...|++++|+..+++++. .+|++.. ++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~~~ 247 (537)
T 3fp2_A 170 FFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLS--ANTVDDPLRENAALALC 247 (537)
T ss_dssp HHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCCHHHHHHHHHHH
T ss_conf 9974474999998763256461789999999878876402068888799999999999998--78774044599999999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999975399689999999999871059874034768999997886410346776887498999999999977429887
Q 005499 347 LAAKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNN 426 (693)
Q Consensus 347 ~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 426 (693)
.++.++...+++. +|+..+++++...| . ..++..+|.++...|++ ++|+..|++++..+|.+
T Consensus 248 ~~g~~~~~~~~~~-~A~~~~~~~~~~~~---~---~~~~~~l~~~~~~~~~~-----------~~A~~~~~~~~~~~~~~ 309 (537)
T 3fp2_A 248 YTGIFHFLKNNLL-DAQVLLQESINLHP---T---PNSYIFLALTLADKENS-----------QEFFKFFQKAVDLNPEY 309 (537)
T ss_dssp HHHHHHHHTTCHH-HHHHHHHHHHHHCC---C---HHHHHHHHHHTCCSSCC-----------HHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHCCCHH-HHHHHHHHHHHCCC---C---CHHHHHHHHHHHHHCCH-----------HHHHHHHHHHHCCCCCC
T ss_conf 9999987545578-99999999986698---7---46999999999980379-----------99999999975459998
Q ss_pred HHHHHHH-----HHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 4788889-----71899899999999999639992999999999999829947999999999842379885389999999
Q 005499 427 ADLFFDL-----EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAK 501 (693)
Q Consensus 427 ~~~~~~l-----~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~ 501 (693)
+.++..+ ..|++++|+..+++++...|.+. .++..+|.++...|++++|+..+++++...| .+..++..+|.
T Consensus 310 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~ 386 (537)
T 3fp2_A 310 PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV-YPYIQLACLLYKQGKFTESEAFFNETKLKFP--TLPEVPTFFAE 386 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCS-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHH
T ss_conf 79999999999866899999999999998599977-9999999999984779999999999987399--98599999999
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHC----------CCHHHHHHHHH
Q ss_conf 99990993699999999999999515420973222200010023899999999999809----------99589999999
Q 005499 502 LKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGL----------SHWKDVAICMG 571 (693)
Q Consensus 502 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~ 571 (693)
++...|++++|+..+++++...|.....+ .....+..++.++... |++++|+..++
T Consensus 387 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~ 452 (537)
T 3fp2_A 387 ILTDRGDFDTAIKQYDIAKRLEEVQEKIH--------------VGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLT 452 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHCSSCS--------------STTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHCCCCCHHHH--------------HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 99883788999999999987097624468--------------8899999889999997640100224757999999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 9882087999999999999997899489999999999409999068999
Q 005499 572 KARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVL 620 (693)
Q Consensus 572 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 620 (693)
+++...|+++.++..+|.++...|++++|+..|++++.+.|........
T Consensus 453 ~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 453 KACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQA 501 (537)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 9997499978999999999998514999999999999868993888888
No 7
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=267.54 Aligned_cols=250 Identities=15% Similarity=0.119 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHH------------HHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 999999999774298874788889------------71899899999999999639992999999999999829947999
Q 005499 410 SEALKSLDGASTFENNNADLFFDL------------EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAE 477 (693)
Q Consensus 410 ~~A~~~~~~al~~~p~~~~~~~~l------------~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~ 477 (693)
++|+..|++++..+|.+...+..+ ..|++++|+..+++++...|. . .++..+|.++...|++++|+
T Consensus 219 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~A~ 296 (537)
T 3fp2_A 219 TKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-P-NSYIFLALTLADKENSQEFF 296 (537)
T ss_dssp HHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-H-HHHHHHHHHTCCSSCCHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-C-HHHHHHHHHHHHHCCHHHHH
T ss_conf 999999999998787740445999999999999987545578999999999866987-4-69999999999803799999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHHHH
Q ss_conf 99999984237988538999999999990993699999999999999515420973222200010023899999999999
Q 005499 478 VVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLY 557 (693)
Q Consensus 478 ~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 557 (693)
..+++++...| .++.++..+|.++...|++++|+..+++++...|.. ..++..+|.++
T Consensus 297 ~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--------------------~~~~~~la~~~ 354 (537)
T 3fp2_A 297 KFFQKAVDLNP--EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN--------------------VYPYIQLACLL 354 (537)
T ss_dssp HHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------------------SHHHHHHHHHH
T ss_pred HHHHHHHCCCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--------------------HHHHHHHHHHH
T ss_conf 99999754599--987999999999986689999999999999859997--------------------79999999999
Q ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH------HHHHHHHHHHH---
Q ss_conf 809995899999999882087999999999999997899489999999999409999068------99999999980---
Q 005499 558 SGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPC------KVLVGSLFSKL--- 628 (693)
Q Consensus 558 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~la~~~~~~--- 628 (693)
...|++++|+..+++++...|.++.++..+|.++...|++++|+..|++++...|.+... +..++.++...
T Consensus 355 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 434 (537)
T 3fp2_A 355 YKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQ 434 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 98477999999999998739998599999999998837889999999999870976244688899999889999997640
Q ss_pred -------CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf -------999969999999999960999999999999999975992799999999971115899
Q 005499 629 -------GPKALPVARSLLSDALRIEPTNRKAWYYLGLVHKDDGRIADAADCFQAASMLEESDP 685 (693)
Q Consensus 629 -------g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 685 (693)
|+++ +|+..++++++..|+++.++..+|.++...|++++|+.+|++++++.|+++
T Consensus 435 ~~~~~~~~~~~--~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 496 (537)
T 3fp2_A 435 DPTQLDEEKFN--AAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMD 496 (537)
T ss_dssp ----CCHHHHH--HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CH
T ss_pred CCHHHHHHHHH--HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCH
T ss_conf 10022475799--999999999974999789999999999985149999999999998689938
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=267.08 Aligned_cols=459 Identities=10% Similarity=0.010 Sum_probs=270.3
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999987789841179888974221688401222105550012232003788888764315588999999999887767
Q 005499 54 FEEARALLGRLEYQRGNVEGALRVFDGIDLHAAIQRLQPSFSEKSASKKCRSRSDSHVSVSQHAASLVLEAIYLKAKSLQ 133 (693)
Q Consensus 54 ~~~a~~~lg~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 133 (693)
.++++..+|..++.+|+|++|+..|+++.... +. ..+++.+|.++.
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~--------------------------------~~~~~~la~~~~ 50 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--ED--------------------------------PVFYSNLSACYV 50 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CC--------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC--CC--------------------------------HHHHHHHHHHHH
T ss_conf 57999998789998602789999999998559--22--------------------------------789986889999
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf 31785799999999999999864259998023213899999998666999962099268999999975003788926778
Q 005499 134 KLGRLTEAANECKSVLDAVERIFQQGIPDAQVDNRLQETVSRAVELLPELWKQVGCDHDALAAYRRAVLSQWNLDNECCA 213 (693)
Q Consensus 134 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 213 (693)
..|++++|+..|+.++... |... .++..++.++...|++++|+..|++++...+. +.....
T Consensus 51 ~~g~~~~A~~~~~~al~~~--------p~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~ 111 (514)
T 2gw1_A 51 SVGDLKKVVEMSTKALELK--------PDYS----------KVLLRRASANEGLGKFADAMFDLSVLSLNGDF-NDASIE 111 (514)
T ss_dssp HHTCHHHHHHHHHHHHHHC--------SCCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSC-CGGGTH
T ss_pred HHHHHHHHHHHHHHHHCCC--------HHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCHHH
T ss_conf 8854999999998776069--------3789----------99998889999876688899999999955987-511378
Q ss_pred HHHHHHHH-HHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 99899899-86312655699987678897545898169999999999899761379995789999999999328989999
Q 005499 214 RIQKRFAV-FLLHSGVEAGPPSLGSQVEGSYAPKNNLEEAILLLLILMKKYHLGKIKWDPAVMEHLTYALSLCSQTSILA 292 (693)
Q Consensus 214 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 292 (693)
........ .......+ ..+.++.+. ..|........ .
T Consensus 112 ~~~~~~~~~~~~~~~~~---------------~l~~~~~~~-------------~~~~~~~~~~~--------------~ 149 (514)
T 2gw1_A 112 PMLERNLNKQAMSKLKE---------------KFGDIDTAT-------------ATPTELSTQPA--------------K 149 (514)
T ss_dssp HHHHHHHHHHHHHHHTT---------------C-----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHH---------------HHHHHHHHH-------------HHHHHCCCCHH--------------H
T ss_conf 99999999999999999---------------999899998-------------76651267724--------------6
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH---CCCCHHHHHHHHHHH
Q ss_conf 99994369999967899999999998799289999999986123899997999999999975---399689999999999
Q 005499 293 KQLEEIMPGVFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLAAKICSE---DCHLAAEGIQYARTA 369 (693)
Q Consensus 293 ~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~---~~~~~~~A~~~~~~a 369 (693)
.... .....+..... ..+... +..+... .....|++...++..+...+. .+++. +|+..++++
T Consensus 150 ~~~~-~~~~~~~~~~~-----~~~~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~A~~~~~~~ 215 (514)
T 2gw1_A 150 ERKD-KQENLPSVTSM-----ASFFGI--FKPELTF-----ANYDESNEADKELMNGLSNLYKRSPESYD-KADESFTKA 215 (514)
T ss_dssp --------CCCCHHHH-----HHHHTT--SCCCCCC-----SSCCSSCHHHHHHHHHHHHHSSCCTTHHH-HHHHHHHHH
T ss_pred HHHH-HCCCCCHHHHH-----HHHHHH--CCHHHHH-----HHHCCCCHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHH
T ss_conf 7886-34478615899-----999862--5878888-----87259958889999899998762332299-999999999
Q ss_pred HH-----H--HCCCC--CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH-----HH
Q ss_conf 87-----1--05987--40347689999978864103467768874989999999999774298874788889-----71
Q 005499 370 LS-----N--AQGKD--EHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNADLFFDL-----EQ 435 (693)
Q Consensus 370 l~-----~--~~~~~--~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-----~~ 435 (693)
+. . .|... ......++..+|.++...|++ ++|+..|++++..+|. ..++..+ ..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~ 283 (514)
T 2gw1_A 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDP-----------LGAHEDIKKAIELFPR-VNSYIYMALIMADR 283 (514)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCH-----------HHHHHHHHHHHHHCCC-HHHHHHHHHHHHTS
T ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCH-----------HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHC
T ss_conf 98866542238100114827899999999999987899-----------9999999999863864-89999999999988
Q ss_pred CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 89989999999999963999299999999999982994799999999984237988538999999999990993699999
Q 005499 436 RNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALPMDAIET 515 (693)
Q Consensus 436 ~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~ 515 (693)
|++++|+..+++++...|.+. .++..+|.++...|++++|+..+++++...| .+..++..++.++...|++++|+..
T Consensus 284 ~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~ 360 (514)
T 2gw1_A 284 NDSTEYYNYFDKALKLDSNNS-SVYYHRGQMNFILQNYDQAGKDFDKAKELDP--ENIFPYIQLACLAYRENKFDDCETL 360 (514)
T ss_dssp SCCTTGGGHHHHHHTTCTTCT-HHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS--SCSHHHHHHHHHTTTTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 889999999999861386778-9999999999980779999999999987385--0289999999999986899999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH------HHHHHHH
Q ss_conf 9999999995154209732222000100238999999999998099958999999998820879999------9999999
Q 005499 516 YRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAE------MLHTEGV 589 (693)
Q Consensus 516 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~lg~ 589 (693)
+++++...|.. ..++..+|.++...|++++|+..+++++...|.++. ++..+|.
T Consensus 361 ~~~~~~~~~~~--------------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 420 (514)
T 2gw1_A 361 FSEAKRKFPEA--------------------PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKAT 420 (514)
T ss_dssp HHHHHHHSTTC--------------------SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHH
T ss_pred HHHHHHHCCCC--------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99999875467--------------------7899999999987889999999999999761233217899999999999
Q ss_pred HHHH---CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 9997---89948999999999940999906899999999980999969999999999960999999999999
Q 005499 590 MHEG---CGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLG 658 (693)
Q Consensus 590 ~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg 658 (693)
++.. .|++++|+..+++++...|++..++..+|.++...|+++ +|...++++++..|+++.++..+.
T Consensus 421 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 421 LLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDID--EAITLFEESADLARTMEEKLQAIT 490 (514)
T ss_dssp HHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 9866332588899999999998758555899999999999825799--999999999876614688999999
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=261.60 Aligned_cols=368 Identities=13% Similarity=0.026 Sum_probs=228.9
Q ss_pred HCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 13799957899999999993289899999999436999996789999999999879928999999998612389999799
Q 005499 265 LGKIKWDPAVMEHLTYALSLCSQTSILAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMA 344 (693)
Q Consensus 265 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~ 344 (693)
+...|.++..+..++..+...|+++.|+..|++++...|.+...|+.+|.++...|++++|+..|++++. .+|++..+
T Consensus 19 ~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~ 96 (450)
T 2y4t_A 19 YFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ--LKMDFTAA 96 (450)
T ss_dssp ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--CCCCCHHH
T ss_conf 6653789999999999999879999999999999984971689999999999987997999999999984--49874899
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH------------HHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 99999999753996899999999998710598740347689999------------978864103467768874989999
Q 005499 345 LLLAAKICSEDCHLAAEGIQYARTALSNAQGKDEHLKGVGLRML------------GLCLGRHAKVSSSDYERSRLQSEA 412 (693)
Q Consensus 345 ~~~~a~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l------------g~~~~~~~~~~~~~~~~~~~~~~A 412 (693)
+..++.++...+++. +|+..+++++...|..... ..++..+ |.++...|++ ++|
T Consensus 97 ~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------~~A 162 (450)
T 2y4t_A 97 RLQRGHLLLKQGKLD-EAEDDFKKVLKSNPSENEE--KEAQSQLIKSDEMQRLRSQALNAFGSGDY-----------TAA 162 (450)
T ss_dssp HHHHHHHHHHTTCHH-HHHHHHHHHHTSCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHTCH-----------HHH
T ss_pred HHHHHHHHHHCCCHH-HHHHHHHHHHHCCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCH-----------HHH
T ss_conf 999999999869999-9999999997249997016--88999999999999999999999986899-----------999
Q ss_pred HHHHHHHHHCCCCCHHHHHHH-----HHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 999999774298874788889-----718998999999999996399929999999999998299479999999998423
Q 005499 413 LKSLDGASTFENNNADLFFDL-----EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDET 487 (693)
Q Consensus 413 ~~~~~~al~~~p~~~~~~~~l-----~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 487 (693)
+..|++++...|.+..++..+ ..|++++|+..++++++..|.+. .++..+|.++...|++++|+..+++++...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 163 IAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNT-EAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 9999999986889769999999999877999999999999998688987-999999999997599999999999998759
Q ss_pred CCCCCHHHHHHH------------HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHH
Q ss_conf 798853899999------------99999909936999999999999995154209732222000100238999999999
Q 005499 488 TKWEQGPILRLK------------AKLKIAQALPMDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLAN 555 (693)
Q Consensus 488 p~~~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 555 (693)
| ++...+..+ +.++...|++++|+..|++++...|..+ ......+..+|.
T Consensus 242 p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~----------------~~~~~~~~~l~~ 303 (450)
T 2y4t_A 242 Q--DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIA----------------EYTVRSKERICH 303 (450)
T ss_dssp T--TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSH----------------HHHHHHHHHHHH
T ss_pred C--CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCH----------------HHHHHHHHHHHH
T ss_conf 9--8089999999999999999999999871799999999999985087336----------------899999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH-----------
Q ss_conf 998099958999999998820879999999999999978994899999999994099990689999999-----------
Q 005499 556 LYSGLSHWKDVAICMGKARELKAYSAEMLHTEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSL----------- 624 (693)
Q Consensus 556 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~----------- 624 (693)
++...|++++|+..+++++...|+++.++..+|.++...|++++|+..|++++.++|++..++..++.+
T Consensus 304 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 383 (450)
T 2y4t_A 304 CFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRD 383 (450)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 99987889999999999988484548999999999987037999999999998859352999999999999864335056
Q ss_pred -HHHHC-----CCCHHHHHHHHHH-HHHHCCCCH----------HHHHHHHHHHHHCCCHHH
Q ss_conf -99809-----9996999999999-996099999----------999999999997599279
Q 005499 625 -FSKLG-----PKALPVARSLLSD-ALRIEPTNR----------KAWYYLGLVHKDDGRIAD 669 (693)
Q Consensus 625 -~~~~g-----~~~l~~A~~~~~~-al~~~p~~~----------~~~~~lg~~~~~~g~~~~ 669 (693)
|..+| +.+ ++.+.+++ +++..|++. .....++.+|..+++.++
T Consensus 384 ~y~~lg~~~~~~~~--~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 384 YYKILGVKRNAKKQ--EIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp SGGGSCSSTTCCTT--HHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HHHHHCCCCCCCHH--HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf 99981898668989--9999999999975989799934789999999999999998689999
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=258.67 Aligned_cols=365 Identities=13% Similarity=0.038 Sum_probs=316.6
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 99999994369999967899999999998799289999999986123899997999999999975399689999999999
Q 005499 290 ILAKQLEEIMPGVFLRSDRWNALALCYSAIGQNDAALNLLRKSLHKHERPNDLMALLLAAKICSEDCHLAAEGIQYARTA 369 (693)
Q Consensus 290 ~a~~~~e~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~a 369 (693)
.....+.+++...|.+...|+.+|..++..|++++|+..|++++. .+|++..++..++.++...+++. +|+..++++
T Consensus 10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~~~g~~~-~A~~~~~~a 86 (450)
T 2y4t_A 10 GVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVD--GDPDNYIAYYRRATVFLAMGKSK-AALPDLTKV 86 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHH-HHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHH-HHHHHHHHH
T ss_conf 446564235665378999999999999987999999999999998--49716899999999999879979-999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCH---HHHHHH-------------
Q ss_conf 8710598740347689999978864103467768874989999999999774298874---788889-------------
Q 005499 370 LSNAQGKDEHLKGVGLRMLGLCLGRHAKVSSSDYERSRLQSEALKSLDGASTFENNNA---DLFFDL------------- 433 (693)
Q Consensus 370 l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l------------- 433 (693)
+...| .. ..++..+|.++...|++ ++|+..|++++..+|.+. ..+..+
T Consensus 87 l~~~p---~~--~~~~~~l~~~~~~~g~~-----------~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 150 (450)
T 2y4t_A 87 IQLKM---DF--TAARLQRGHLLLKQGKL-----------DEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQA 150 (450)
T ss_dssp HHHCT---TC--HHHHHHHHHHHHHTTCH-----------HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCC---CC--HHHHHHHHHHHHHCCCH-----------HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 84498---74--89999999999986999-----------9999999999724999701688999999999999999999
Q ss_pred ----HHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCH
Q ss_conf ----7189989999999999963999299999999999982994799999999984237988538999999999990993
Q 005499 434 ----EQRNLSTALRYAKQYIDATGGSVLKGWKLLALVLSAQQRFSEAEVVTDAALDETTKWEQGPILRLKAKLKIAQALP 509 (693)
Q Consensus 434 ----~~~~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~ 509 (693)
..|++++|+..+++++...|.+. .++..+|.++...|++++|+..+++++...| .+..++..+|.++...|++
T Consensus 151 ~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~ 227 (450)
T 2y4t_A 151 LNAFGSGDYTAAIAFLDKILEVCVWDA-ELRELRAECFIKEGEPRKAISDLKAASKLKN--DNTEAFYKISTLYYQLGDH 227 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC--SCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHCCCH
T ss_conf 999986899999999999998688976-9999999999877999999999999998688--9879999999999975999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH----HHH
Q ss_conf 6999999999999995154209732222000100238999999999998099958999999998820879999----999
Q 005499 510 MDAIETYRYLLALVQAQRKSFGPLRCLSQIEDDKVNEFQVWHGLANLYSGLSHWKDVAICMGKARELKAYSAE----MLH 585 (693)
Q Consensus 510 ~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~ 585 (693)
++|+..+++++...|.....+.... .......+..+|.++...|++++|+.+|++++...|.++. .+.
T Consensus 228 ~~A~~~~~~~~~~~p~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 299 (450)
T 2y4t_A 228 ELSLSEVRECLKLDQDHKRCFAHYK--------QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKE 299 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHH--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHH--------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 9999999999875998089999999--------99999999999999987179999999999998508733689999999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH-----
Q ss_conf 999999978994899999999994099990689999999998099996999999999996099999999999999-----
Q 005499 586 TEGVMHEGCGQTHEALRAYINALLIEPSYVPCKVLVGSLFSKLGPKALPVARSLLSDALRIEPTNRKAWYYLGLV----- 660 (693)
Q Consensus 586 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~l~~A~~~~~~al~~~p~~~~~~~~lg~~----- 660 (693)
.+|.++...|++++|+..+++++...|++..++..+|.++...|+++ +|+..+++++++.|+++.++..++.+
T Consensus 300 ~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 377 (450)
T 2y4t_A 300 RICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYD--EAIQDYETAQEHNENDQQIREGLEKAQRLLK 377 (450)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 99999998788999999999998848454899999999998703799--9999999998859352999999999999864
Q ss_pred -------HHHCC-----CHHHHHHHHHH-HHHCCCCCCC
Q ss_conf -------99759-----92799999999-9711158997
Q 005499 661 -------HKDDG-----RIADAADCFQA-ASMLEESDPI 686 (693)
Q Consensus 661 -------~~~~g-----~~~~A~~~~~~-al~l~p~~~~ 686 (693)
|...| +.+++...|++ ++...|++..
T Consensus 378 ~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~ 416 (450)
T 2y4t_A 378 QSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQ 416 (450)
T ss_dssp HHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCC
T ss_pred CCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 335056999818986689899999999999975989799
Done!