Citrus Sinensis ID: 005500

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690---
MATYFHGNPAEFQAPDGLQTLVLMNPTTYVQQQQQQHQQFSDTNHPPAPAPAHNSLIFLNSSAISPHAPPPPSHTQHFVGIPTTAHQDDSISPLHGLLPRVHYNLYNPNYPSPPARDTPRAKQGLSLSLSSHQHPAFGSQGGQTVSGEDIRVSGGSASSGSGVTNGVSGMQSVLLSSKYLKAAQELLDEVVNVNNSGISNKSEFSKKGSGNNNSNINKVIGESSAAAGDDGQSAGKRAAELTTAERQEIQMKKAKLINMLDEVEQRYRQYHHQMQIVISSFEQAAGIESAKTYTALALKTISKQFRCLKDAITGQIKAANKMLGEEDCVGSKIEGSRLKFVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEIKDQEQNGSEDKTSKSEHNEDSASKSTAAQEKNLVKETQNSKSFKSSEDNLTNQNVHSMISMSTIATSPIGGGNARNHSGFSLIGSSELEGLTQGSPKKPRNSDMNMMLSPSNVPSISIDVKPGGNEATNDLMPMKFDDDDRQSRDGYSFIGNQMNFIQGFGQYPIGEIGRFDAEQFTPRFSGNGVSLTLGLPHCENLSLSATHQNFLPSQNIQLGRRVEIGEPNEFGTINTQSPHASAAYENMNIQNRKRFAAQLLPDFVA
ccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cEEEEccccHHcccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccHHHccccccccHHcHcccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcc
matyfhgnpaefqapdglqtlvlmnpTTYVQQQQQQHQqfsdtnhppapapahnsliflnssaisphappppshtqhfvgipttahqddsisplhgllprvhynlynpnypsppardtprakqglslslsshqhpafgsqggqtvsgedirvsggsassgsgvtngVSGMQSVLLSSKYLKAAQELLDEVVNVnnsgisnksefskkgsgnnnsninkvigessaaagddgqsAGKRAAELTTAERQEIQMKKAKLINMLDEVEQRYRQYHHQMQIVISSFEQAAGIESAKTYTALALKTISKQFRCLKDAITGQIKAANKMlgeedcvgskiegsrlkfVDHHLRQQRALQQLGMiqhnawrpqrglperSVSVLRAWLFEhflhpypkdsdkqMLAKqtgltrsqvsNWFINARVRLWKPMVEEMYLEEIKdqeqngsedktsksehnedsasksTAAQEKNLVKetqnsksfkssednltnqnvhsMISMstiatspigggnarnhsgfsligsselegltqgspkkprnsdmnmmlspsnvpsisidvkpggneatndlmpmkfddddrqsrdgysFIGNQMNfiqgfgqypigeigrfdaeqftprfsgngvsltlglphcenlslsathqnflpsqniqlgrrveigepnefgtintqsphasaaYENMNIQNRKRFAAQLLPDFVA
matyfhgnpaefqapdGLQTLVLMNPTTYVQQQQQQHQQFSDTNHPPAPAPAHNSLIFLNSSAISPHAPPPPSHTQHFVGIPTTAHQDDSISPLHGLLPRVHYNLYNPNYPSPPARDTPRAKQGLSLSLSSHQHPAFGSQGGQTVSGEDIRVSGGsassgsgvtNGVSGMQSVLLSSKYLKAAQELLDEVVNvnnsgisnksefskkgsgnnNSNINKVIGEssaaagddgqSAGKRAAELTTAERQEIQMKKAKLINMLDEVEQRYRQYHHQMQIVISSFEQAAGIESAKTYTALALKTISKQFRCLKDAITGQIKAANKMLGEEDCVGSKIEGSRLKFVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTgltrsqvsnwfinARVRLWKPMVEEMYLEEIkdqeqngsedktsksehnedsaskstaaqeKNLVketqnsksfkssedNLTNQNVHSMISMSTIATSPIGGGNARNHSGFSLIGSSELEGLTQGSPKKPRNSDMNMMLSPSNVPSISIDVKPGGNEATNDLMPMKFDDDDRQSRDGYSFIGNQMNFIQGFGQYPIGEIGRFDAEQFTPRFSGNGVSLTLGLPHCENLSLSATHQNFLPSQNIQLGRRVEIGEPNEFGTINTQSPHASAAYENMNIQNRKRFAAQLLPDFVA
MATYFHGNPAEFQAPDGLQTLVLMNPTTYVqqqqqqhqqFSDTNHppapapaHNSLIFLNssaisphappppshTQHFVGIPTTAHQDDSISPLHGLLPRVHynlynpnypsppARDTPRAKQGlslslssHQHPAFGSQGGQTVSGEDIRvsggsassgsgvtngvsgMQSVLLSSKYLKAAQELLDEVVNVNNSGIsnksefskkgsgnnnsninkVIgessaaagddgqsagKRAAELTTAERQEIQMKKAKLINMLDEVEQRYRQYHHQMQIVISSFEQAAGIESAKTYTALALKTISKQFRCLKDAITGQIKAANKMLGEEDCVGSKIEGSRLKFVDHHlrqqralqqlGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEIKDQEQNGSEDKTSKSEHNEDSASKSTAAQEKNLVKETQNSKSFKSSEDNLTNQNVHSMISMSTIATSPIGGGNARNHSGFSLIGSSELEGLTQGSPKKPRNSDMNMMLSPSNVPSISIDVKPGGNEATNDLMPMKFDDDDRQSRDGYSFIGNQMNFIQGFGQYPIGEIGRFDAEQFTPRFSGNGVSLTLGLPHCENLSLSATHQNFLPSQNIQLGRRVEIGEPNEFGTINTQSPHASAAYENMNIQNRKRFAAQLLPDFVA
******************************************************************************************ISPLHGLLPRVHYNLYN******************************************************************LLSSKYLKAAQELLDEVVN**************************************************************KLINMLDEVEQRYRQYHHQMQIVISSFEQAAGIESAKTYTALALKTISKQFRCLKDAITGQIKAANKMLGEEDCVGSKIEGSRLKFVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYP***********TGLTRSQVSNWFINARVRLWKPMVEEMYLE***************************************************************************************************************************************************GYSFIGNQMNFIQGFGQYPIGEIGRFDAEQFTPRFSGNGVSLTLGLPHCENLSLSATHQNFLPSQNIQLGRRV*******************************************
MATYF***************LVLM*****************************************************************************************************************************************************LLSSKYLKAAQELLDEVVNVNNS****************************************************IQMKKAKLINMLDEVEQRYRQYHHQMQIVISSFEQAAGIESAKTYTALALKTISKQFRCLK***************************************************************VSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVRLWKP**********************************************************************************************************************************************************************IQGFGQYPIGEI********************LG*************************************************************AAQLLPDFVA
MATYFHGNPAEFQAPDGLQTLVLMNPTTY******************APAPAHNSLIFLNSSAISPHAPPPPSHTQHFVGIPTTAHQDDSISPLHGLLPRVHYNLYNPNYPSP********************************SGEDIRVSGGSASSGSGVTNGVSGMQSVLLSSKYLKAAQELLDEVVNVNNSGISNKSEFSKKGSGNNNSNINKVIGESS****************LTTAERQEIQMKKAKLINMLDEVEQRYRQYHHQMQIVISSFEQAAGIESAKTYTALALKTISKQFRCLKDAITGQIKAANKMLGEEDCVGSKIEGSRLKFVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEIK***********************************************NLTNQNVHSMISMSTIATSPIGGGNARNHSGFSLIGSSEL***********RNSDMNMMLSPSNVPSISIDVKPGGNEATNDLMPMKFDDDDRQSRDGYSFIGNQMNFIQGFGQYPIGEIGRFDAEQFTPRFSGNGVSLTLGLPHCENLSLSATHQNFLPSQNIQLGRRVEIGEPNEFGTINTQSPHASAAYENMNIQNRKRFAAQLLPDFVA
MATYF*GNPAEFQAPDGLQTLVLMNPTTYVQQQQQQH***********************************SHTQHFVGIPTTAHQDDSISPLHGLLPRVHYNLYNPNYP*******************************************************VSGMQSVLLSSKYLKAAQELLDEVVNVN*************************************************AERQEIQMKKAKLINMLDEVEQRYRQYHHQMQIVISSFEQAAGIESAKTYTALALKTISKQFRCLKDAITGQIKAANKMLG**********GSRLKFVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEIKDQ*********************************************************************************************************************************************DGYSFIGNQMNFIQGFGQYPIGEIGRFDAEQFTPRFSGNGVSLTLGLPHCENLSLSATHQNFLPSQNIQLGRRVEIGEPN********************IQNRKRFAAQLLPDFVA
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MATYFHGNPAEFQAPDGLQTLVLMNPTTYVQQQQQQHQQFSDTNHPPAPAPAHNSLIFLNSSAISPHAPPPPSHTQHFVGIPTTAHQDDSISPLHGLLPRVHYNLYNPNYPSPPARDTPRAKQGLSLSLSSHQHPAFGSQGGQTVSGEDIRVSGGSASSGSGVTNGVSGMQSVLLSSKYLKAAQELLDEVVNVNNSGISNKSEFSKKGSGNNNSNINKVIGESSAAAGDDGQSAGKRAAELTTAExxxxxxxxxxxxxxxxxxxxxxxxxxxxMQIVISSFEQAAGIESAKTYTALALKTISKQFRCLKDAITGQIKAANKMLGEEDCVGSKIEGSRLKFVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEIKDQEQNGSEDKTSKSEHNEDSASKSTAAQEKNLVKETQNSKSFKSSEDNLTNQNVHSMISMSTIATSPIGGGNARNHSGFSLIGSSELEGLTQGSPKKPRNSDMNMMLSPSNVPSISIDVKPGGNEATNDLMPMKFDDDDRQSRDGYSFIGNQMNFIQGFGQYPIGEIGRFDAEQFTPRFSGNGVSLTLGLPHCENLSLSATHQNFLPSQNIQLGRRVEIGEPNEFGTINTQSPHASAAYENMNIQNRKRFAAQLLPDFVA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query693 2.2.26 [Sep-21-2011]
Q9SJ56680 BEL1-like homeodomain pro yes no 0.890 0.907 0.539 1e-172
Q9SIW1482 BEL1-like homeodomain pro no no 0.380 0.547 0.564 8e-82
O65685532 BEL1-like homeodomain pro no no 0.458 0.597 0.501 2e-79
Q9FWS9524 BEL1-like homeodomain pro no no 0.363 0.480 0.553 3e-76
Q9FXG8538 BEL1-like homeodomain pro no no 0.373 0.481 0.541 4e-76
Q9SW80739 BEL1-like homeodomain pro no no 0.392 0.368 0.48 3e-72
Q8S897431 BEL1-like homeodomain pro no no 0.365 0.587 0.479 7e-70
Q94KL5627 BEL1-like homeodomain pro no no 0.359 0.397 0.507 1e-69
Q38897611 Homeobox protein BEL1 hom no no 0.372 0.422 0.452 1e-63
Q9LZM8575 BEL1-like homeodomain pro no no 0.415 0.500 0.427 5e-57
>sp|Q9SJ56|BLH1_ARATH BEL1-like homeodomain protein 1 OS=Arabidopsis thaliana GN=BLH1 PE=1 SV=1 Back     alignment and function desciption
 Score =  607 bits (1564), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 408/756 (53%), Positives = 485/756 (64%), Gaps = 139/756 (18%)

Query: 1   MATYFHGNPAEFQA--PDGLQTLVLMNPTTYVQQQQQQHQQFSDTNHPPAPAPAHNS--- 55
           MA YFHGNP E  A    GLQTL+LMNPTTYVQ  QQ +   ++ N   +     N+   
Sbjct: 1   MAAYFHGNPPEISAGSDGGLQTLILMNPTTYVQYTQQDNDSNNNNNSNNSNNNNTNTNTN 60

Query: 56  -----LIFLNSSAISPHAPPPPSHTQHFVGIPTTAHQD------DSISPLHGLLPRVHYN 104
                 +FL+S A      P P+ +Q FVGIP + H+       D+IS LHG  PRV Y+
Sbjct: 61  NNNSSFVFLDSHA------PQPNASQQFVGIPLSGHEAASITAADNISVLHGYPPRVQYS 114

Query: 105 LYNPNYPSP----PARDTPRAKQGLSLSLSSHQ-------------HPAFGSQGGQTVSG 147
           LY  +   P     A +TPRA+QGLSL+LSS Q             H  FGS       G
Sbjct: 115 LYGSHQVDPTHQQAACETPRAQQGLSLTLSSQQQQQQQHHQQHQPIHVGFGSG-----HG 169

Query: 148 EDIRVSGGSASSGSGVTNGVSGMQSVLLSSKYLKAAQELLDEVVNVNNSGISNKSEF--S 205
           EDIRV  GS S+GSGVTNG++     L+SSKYLKAAQELLDEVVN ++  ++ KS+   S
Sbjct: 170 EDIRV--GSGSTGSGVTNGIAN----LVSSKYLKAAQELLDEVVNADSDDMNAKSQLFSS 223

Query: 206 KKGS-GNNNSNINKVIGESSAAAGDDGQSAGKRAAELTTAERQEIQMKKAKLINMLDEVE 264
           KKGS GN+        G     +G   ++AGKR  EL TAERQEIQMKKAKL NML EVE
Sbjct: 224 KKGSCGNDKPVGESSAGAGGEGSGGGAEAAGKRPVELGTAERQEIQMKKAKLSNMLHEVE 283

Query: 265 QRYRQYHHQMQIVISSFEQAAGIESAKTYTALALKTISKQFRCLKDAITGQIKAANKMLG 324
           QRYRQYH QMQ+VISSFEQAAGI SAK+YT+LALKTIS+QFRCLK+AI GQIKAANK LG
Sbjct: 284 QRYRQYHQQMQMVISSFEQAAGIGSAKSYTSLALKTISRQFRCLKEAIAGQIKAANKSLG 343

Query: 325 EEDCVGS--KIEGSRLKFVDHHLRQQRALQQLGMIQH---NAWRPQRGLPERSVSVLRAW 379
           EED V    + EGSRLKFVDHHLRQQRALQQLGMIQH   NAWRPQRGLPER+VSVLRAW
Sbjct: 344 EEDSVSGVGRFEGSRLKFVDHHLRQQRALQQLGMIQHPSNNAWRPQRGLPERAVSVLRAW 403

Query: 380 LFEHFLHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEIKDQEQN- 438
           LFEHFLHPYPKDSDK MLAKQTGLTRSQVSNWFINARVRLWKPMVEEMY+EE+K+Q +N 
Sbjct: 404 LFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEMKEQAKNM 463

Query: 439 GSEDKTSKSEHNEDSASKSTAAQEKNLVKETQNSKSFKSSEDNLTNQNVHSMISMSTIAT 498
           GS +KT   + NEDSASKST+ QEK+ + +T                N H          
Sbjct: 464 GSMEKTPLDQSNEDSASKSTSNQEKSPMADT----------------NYH---------M 498

Query: 499 SPIGGGNARNHSGFSLIGSSELEGLT--QGSPKKPRNSDMNMMLSPSNVPSISIDVKPGG 556
           +P       NH+G       +LEG+T  QGSPK+ R SD  MM  P N            
Sbjct: 499 NP-------NHNG-------DLEGVTGMQGSPKRLRTSDETMM-QPINA----------- 532

Query: 557 NEATNDLMPMKFDDDDR--QSRDGYSFIGNQMNFIQGFGQYPIGEIGRFDA----EQFTP 610
           + ++N+ + MK  ++ +  +S  GY F+GN       FGQY + E+ RFD     E    
Sbjct: 533 DFSSNEKLTMKILEERQGIRSDGGYPFMGN-------FGQYQMDEMSRFDVVSDQELMAQ 585

Query: 611 RFSGN--GVSLTLGLPHCENLSLSATHQNFLPSQN-IQLGRRVEIGEPNEFG--TIN--- 662
           R+SGN  GVSLTLGLPHC++LS S  HQ F+ + + I +GRRV+IGE  E+G  TIN   
Sbjct: 586 RYSGNNNGVSLTLGLPHCDSLS-STHHQGFMQTHHGIPIGRRVKIGETEEYGPATINGGS 644

Query: 663 -----TQSPHASAAYENMNIQNRKRFAAQLLPDFVA 693
                  S  A+AAY  MNIQN+KR+ AQLLPDFVA
Sbjct: 645 STTTAHSSAAAAAAYNGMNIQNQKRYVAQLLPDFVA 680

Arabidopsis thaliana (taxid: 3702)
>sp|Q9SIW1|BLH7_ARATH BEL1-like homeodomain protein 7 OS=Arabidopsis thaliana GN=BLH7 PE=2 SV=1 Back     alignment and function description
>sp|O65685|BLH6_ARATH BEL1-like homeodomain protein 6 OS=Arabidopsis thaliana GN=BLH6 PE=2 SV=1 Back     alignment and function description
>sp|Q9FWS9|BLH3_ARATH BEL1-like homeodomain protein 3 OS=Arabidopsis thaliana GN=BLH3 PE=1 SV=1 Back     alignment and function description
>sp|Q9FXG8|BLH10_ARATH BEL1-like homeodomain protein 10 OS=Arabidopsis thaliana GN=BLH10 PE=1 SV=1 Back     alignment and function description
>sp|Q9SW80|BLH2_ARATH BEL1-like homeodomain protein 2 OS=Arabidopsis thaliana GN=BLH2 PE=1 SV=3 Back     alignment and function description
>sp|Q8S897|BLH5_ARATH BEL1-like homeodomain protein 5 OS=Arabidopsis thaliana GN=BLH5 PE=2 SV=2 Back     alignment and function description
>sp|Q94KL5|BLH4_ARATH BEL1-like homeodomain protein 4 OS=Arabidopsis thaliana GN=BLH4 PE=2 SV=2 Back     alignment and function description
>sp|Q38897|BEL1_ARATH Homeobox protein BEL1 homolog OS=Arabidopsis thaliana GN=BEL1 PE=1 SV=2 Back     alignment and function description
>sp|Q9LZM8|BLH9_ARATH BEL1-like homeodomain protein 9 OS=Arabidopsis thaliana GN=BLH9 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query693
255566131679 bel1 homeotic protein, putative [Ricinus 0.959 0.979 0.735 0.0
224140018644 predicted protein [Populus trichocarpa] 0.903 0.972 0.701 0.0
225439446696 PREDICTED: BEL1-like homeodomain protein 0.949 0.945 0.654 0.0
356505435679 PREDICTED: BEL1-like homeodomain protein 0.935 0.954 0.645 0.0
449529982716 PREDICTED: BEL1-like homeodomain protein 0.961 0.930 0.631 0.0
147805477709 hypothetical protein VITISV_015358 [Viti 0.949 0.928 0.642 0.0
356500591664 PREDICTED: BEL1-like homeodomain protein 0.919 0.959 0.644 0.0
449437472716 PREDICTED: BEL1-like homeodomain protein 0.961 0.930 0.629 0.0
356534548661 PREDICTED: BEL1-like homeodomain protein 0.923 0.968 0.637 0.0
224088098512 predicted protein [Populus trichocarpa] 0.737 0.998 0.779 0.0
>gi|255566131|ref|XP_002524053.1| bel1 homeotic protein, putative [Ricinus communis] gi|223536621|gb|EEF38263.1| bel1 homeotic protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  911 bits (2355), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 520/707 (73%), Positives = 577/707 (81%), Gaps = 42/707 (5%)

Query: 1   MATYFHGNPAEFQAP--DGLQTLVLMNPTTYVQQQQQQHQQFSDTNHPPAPAPAHNSLIF 58
           MATYFHGNP E QA   +GLQTLVLMNPT YVQ        +SDT   P P P+ N L+F
Sbjct: 1   MATYFHGNP-EIQAAAAEGLQTLVLMNPT-YVQ--------YSDT---PPPQPSSN-LVF 46

Query: 59  LNSSAISPHAPPP-----PSHTQHFVGIPTTAHQDDSISPLHGLLPRVHYNLYNPNYPSP 113
           LNS+A S   PPP     P  TQ FVGIP   +  D+ S LHGL+PR+HYNLYNP  P+ 
Sbjct: 47  LNSAA-SNLTPPPHFSHAPPSTQQFVGIPLDPNSHDT-STLHGLVPRIHYNLYNPIDPAS 104

Query: 114 PARDTPRAKQGLSLSLSSHQHPAFGSQGGQTVSGEDIRVSGGSASSGSGVTNGVSGMQSV 173
            AR+ PRA+QGLSLSLSS Q P +GSQ  Q VSGED+RVSGGS SSGSGVTNGVSG+Q V
Sbjct: 105 AAREIPRAQQGLSLSLSSQQQPGYGSQA-QAVSGEDMRVSGGSVSSGSGVTNGVSGIQGV 163

Query: 174 LLSSKYLKAAQELLDEVVNVNNSGISNKSEFSKKGSGNNNSNINK------VIGESSAAA 227
           LLSSKYLKAAQELLDEVVNVNN+G+  KSE SKKG+    SN +         GE SA  
Sbjct: 164 LLSSKYLKAAQELLDEVVNVNNNGL--KSELSKKGNNGIISNNSNKALGESSAGEGSAGG 221

Query: 228 GDDGQSAGKRAAELTTAERQEIQMK-KAKLINMLDEVEQRYRQYHHQMQIVISSFEQAAG 286
           G D  + GKR AEL+TAERQEIQM  KAKLI+MLDEVEQRYRQYHHQMQIVISSFEQAAG
Sbjct: 222 GGDSGAGGKRGAELSTAERQEIQMXXKAKLISMLDEVEQRYRQYHHQMQIVISSFEQAAG 281

Query: 287 IESAKTYTALALKTISKQFRCLKDAITGQIKAANKMLGEEDCVGSKIEGSRLKFVDHHLR 346
           I SAKTYTALAL+TISKQFRCLKDAITGQIKAANK LGEEDC+G K+EGSRLKFVDHHLR
Sbjct: 282 IGSAKTYTALALQTISKQFRCLKDAITGQIKAANKSLGEEDCLGGKLEGSRLKFVDHHLR 341

Query: 347 QQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRS 406
           QQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDK MLAKQTGLTRS
Sbjct: 342 QQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRS 401

Query: 407 QVSNWFINARVRLWKPMVEEMYLEEIKDQEQNGSEDKTSKSEHNEDSASKSTAAQEKNLV 466
           QVSNWFINARVRLWKPMVEEMYLEEIK+QE+NGS+DKTSKSE NE++A KS   QEK   
Sbjct: 402 QVSNWFINARVRLWKPMVEEMYLEEIKEQERNGSDDKTSKSEQNENAAPKSV-LQEKGSA 460

Query: 467 KETQNSKSFKSSEDNLTNQNVHSMISMSTIATSPIGGGNARNHSGFSLIGSSELEGLTQG 526
            E Q +KSFKS  D   N N  S +S+ST +TSPI GGN RN SGFSLIGSSELEG+TQG
Sbjct: 461 VENQ-TKSFKSL-DGSPNHNAPSAVSVSTASTSPI-GGNVRNQSGFSLIGSSELEGITQG 517

Query: 527 SPKKPRNSDMNMMLSPSNVPSISIDVKPGGNEATNDLMPMKFDDDDRQSRDGYSFIGNQM 586
           SPK+ R+++  M+ SP++VPSI++D+KPG  E  ND + MKF   +RQ+RDGYSFIG Q 
Sbjct: 518 SPKRHRSTE--MIQSPTSVPSINMDIKPG--EMNNDQISMKF-GSERQNRDGYSFIGGQT 572

Query: 587 NFIQGFGQYPIGEIGRFDAEQFTPRFSGNGVSLTLGLPHCENLSLSATHQNFLPSQNIQL 646
           NFI GFGQYPIG++GRFD EQFTPRFSGNGVSLTLGLPHCENLS+S TH++FLPSQNIQL
Sbjct: 573 NFIGGFGQYPIGDLGRFDTEQFTPRFSGNGVSLTLGLPHCENLSMSGTHESFLPSQNIQL 632

Query: 647 GRRVEIGEPNEFGTINTQSPHASAAYENMNIQNRKRFAAQLLPDFVA 693
           GRRVEI EPNEFG INT +PH+S AYE++NIQNRKRFAAQLLPDFVA
Sbjct: 633 GRRVEISEPNEFGGINTSTPHSSTAYESINIQNRKRFAAQLLPDFVA 679

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224140018|ref|XP_002323384.1| predicted protein [Populus trichocarpa] gi|222868014|gb|EEF05145.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225439446|ref|XP_002266838.1| PREDICTED: BEL1-like homeodomain protein 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356505435|ref|XP_003521496.1| PREDICTED: BEL1-like homeodomain protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|449529982|ref|XP_004171976.1| PREDICTED: BEL1-like homeodomain protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|147805477|emb|CAN63083.1| hypothetical protein VITISV_015358 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356500591|ref|XP_003519115.1| PREDICTED: BEL1-like homeodomain protein 1-like isoform 1 [Glycine max] gi|356500593|ref|XP_003519116.1| PREDICTED: BEL1-like homeodomain protein 1-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|449437472|ref|XP_004136516.1| PREDICTED: BEL1-like homeodomain protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356534548|ref|XP_003535815.1| PREDICTED: BEL1-like homeodomain protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|224088098|ref|XP_002308323.1| predicted protein [Populus trichocarpa] gi|222854299|gb|EEE91846.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query693
TAIR|locus:2039250680 BLH1 "AT2G35940" [Arabidopsis 0.533 0.544 0.565 4.2e-132
TAIR|locus:2042609482 BLH7 "AT2G16400" [Arabidopsis 0.301 0.433 0.606 3.6e-75
TAIR|locus:2139614532 BLH6 "AT4G34610" [Arabidopsis 0.316 0.411 0.592 1.8e-73
TAIR|locus:2049035627 BLH4 "BEL1-like homeodomain 4" 0.380 0.421 0.437 3.2e-69
TAIR|locus:2115000739 BLH2 "AT4G36870" [Arabidopsis 0.341 0.320 0.484 1.8e-62
TAIR|locus:2018398524 BLH3 "AT1G75410" [Arabidopsis 0.432 0.572 0.436 6.2e-62
TAIR|locus:2013154538 BEL10 "AT1G19700" [Arabidopsis 0.434 0.559 0.453 7.9e-62
TAIR|locus:2185183575 RPL "AT5G02030" [Arabidopsis t 0.369 0.445 0.454 1.4e-58
TAIR|locus:2177856611 BEL1 "AT5G41410" [Arabidopsis 0.513 0.582 0.363 3.3e-56
TAIR|locus:2018457290 BLH11 "BEL1-like homeodomain 1 0.298 0.713 0.456 8.7e-51
TAIR|locus:2039250 BLH1 "AT2G35940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 986 (352.1 bits), Expect = 4.2e-132, Sum P(2) = 4.2e-132
 Identities = 230/407 (56%), Positives = 254/407 (62%)

Query:    89 DSISPLHGLLPRVHXXXXXXX----XXXXXARDTPRAKQGXXXXXXX--------HQ--- 133
             D+IS LHG  PRV                 A +TPRA+QG               HQ   
Sbjct:    99 DNISVLHGYPPRVQYSLYGSHQVDPTHQQAACETPRAQQGLSLTLSSQQQQQQQHHQQHQ 158

Query:   134 --HPAFGSQGGQTVSGEDIRXXXXXXXXXXXXXXXXXXMQSVLLSSKYLKAAQELLDEVV 191
               H  FGS  G    GEDIR                      L+SSKYLKAAQELLDEVV
Sbjct:   159 PIHVGFGS--GH---GEDIRVGSGSTGSGVTNGIAN------LVSSKYLKAAQELLDEVV 207

Query:   192 NVNNSGIXXXXXXXXXXXXXXXXXX---XXVIXXXXXXXXXXXXXXXKRAAELTTAERQE 248
             N ++  +                                        KR  EL TAERQE
Sbjct:   208 NADSDDMNAKSQLFSSKKGSCGNDKPVGESSAGAGGEGSGGGAEAAGKRPVELGTAERQE 267

Query:   249 IQMKKAKLINMLDEVEQRYRQYHHQMQIVISSFEQAAGIESAKTYTALALKTISKQFRCL 308
             IQMKKAKL NML EVEQRYRQYH QMQ+VISSFEQAAGI SAK+YT+LALKTIS+QFRCL
Sbjct:   268 IQMKKAKLSNMLHEVEQRYRQYHQQMQMVISSFEQAAGIGSAKSYTSLALKTISRQFRCL 327

Query:   309 KDAITGQIKAANKMLGEEDCVGS--KIEGSRLKFVDHHXXXXXXXXXXGMIQH---NAWR 363
             K+AI GQIKAANK LGEED V    + EGSRLKFVDHH          GMIQH   NAWR
Sbjct:   328 KEAIAGQIKAANKSLGEEDSVSGVGRFEGSRLKFVDHHLRQQRALQQLGMIQHPSNNAWR 387

Query:   364 PQRGLPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVRLWKPM 423
             PQRGLPER+VSVLRAWLFEHFLHPYPKDSDK MLAKQTGLTRSQVSNWFINARVRLWKPM
Sbjct:   388 PQRGLPERAVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPM 447

Query:   424 VEEMYLEEIKDQEQN-GSEDKTSKSEHNEDSASKSTAAQEKNLVKET 469
             VEEMY+EE+K+Q +N GS +KT   + NEDSASKST+ QEK+ + +T
Sbjct:   448 VEEMYMEEMKEQAKNMGSMEKTPLDQSNEDSASKSTSNQEKSPMADT 494
GO:0003677 "DNA binding" evidence=ISS;IDA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0043565 "sequence-specific DNA binding" evidence=IEA
GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA
GO:0010197 "polar nucleus fusion" evidence=IMP
GO:0005737 "cytoplasm" evidence=IDA
GO:0042803 "protein homodimerization activity" evidence=IPI
GO:0046982 "protein heterodimerization activity" evidence=IPI
GO:0009610 "response to symbiotic fungus" evidence=IEP;RCA
GO:0010201 "response to continuous far red light stimulus by the high-irradiance response system" evidence=IMP
GO:0000303 "response to superoxide" evidence=RCA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0009733 "response to auxin stimulus" evidence=RCA
GO:0009743 "response to carbohydrate stimulus" evidence=RCA
GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA
GO:0009873 "ethylene mediated signaling pathway" evidence=RCA
GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0019344 "cysteine biosynthetic process" evidence=RCA
GO:0048513 "organ development" evidence=RCA
TAIR|locus:2042609 BLH7 "AT2G16400" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2139614 BLH6 "AT4G34610" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2049035 BLH4 "BEL1-like homeodomain 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2115000 BLH2 "AT4G36870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018398 BLH3 "AT1G75410" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013154 BEL10 "AT1G19700" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2185183 RPL "AT5G02030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2177856 BEL1 "AT5G41410" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018457 BLH11 "BEL1-like homeodomain 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SJ56BLH1_ARATHNo assigned EC number0.53960.89030.9073yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query693
pfam07526139 pfam07526, POX, Associated with HOX 5e-65
smart00574140 smart00574, POX, domain associated with HOX domain 5e-52
pfam0592040 pfam05920, Homeobox_KN, Homeobox KN domain 8e-21
cd0008659 cd00086, homeodomain, Homeodomain; DNA binding dom 1e-12
smart0038957 smart00389, HOX, Homeodomain 7e-10
pfam0004657 pfam00046, Homeobox, Homeobox domain 2e-05
>gnl|CDD|219452 pfam07526, POX, Associated with HOX Back     alignment and domain information 
 Score =  210 bits (538), Expect = 5e-65
 Identities = 72/143 (50%), Positives = 95/143 (66%), Gaps = 4/143 (2%)

Query: 172 SVLLSSKYLKAAQELLDEVVNVNNSGISNKSEFSKKGSGNNNSNINKVIGESSAAAGDDG 231
           SVL  SKYLK AQELL+E  +V      NK+      +G  N   +             G
Sbjct: 1   SVLRGSKYLKPAQELLEEFCSVGK----NKALDDDSSNGAENGANSSGASSGDGGGSSAG 56

Query: 232 QSAGKRAAELTTAERQEIQMKKAKLINMLDEVEQRYRQYHHQMQIVISSFEQAAGIESAK 291
            S+   + EL+TAERQE+Q KKAKL++ML+EV++RYRQY+ QMQ+VISSFE  AG+ +AK
Sbjct: 57  DSSDSSSPELSTAERQELQRKKAKLLSMLEEVDRRYRQYYDQMQMVISSFEAVAGLGAAK 116

Query: 292 TYTALALKTISKQFRCLKDAITG 314
            YTALAL+ +S+ FRCL+DAI+G
Sbjct: 117 PYTALALQAMSRHFRCLRDAISG 139

The function of this domain is unknown. It is often found in plant proteins associated with pfam00046. Length = 139
>gnl|CDD|214728 smart00574, POX, domain associated with HOX domains Back     alignment and domain information
>gnl|CDD|203350 pfam05920, Homeobox_KN, Homeobox KN domain Back     alignment and domain information
>gnl|CDD|238039 cd00086, homeodomain, Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner Back     alignment and domain information
>gnl|CDD|197696 smart00389, HOX, Homeodomain Back     alignment and domain information
>gnl|CDD|200956 pfam00046, Homeobox, Homeobox domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 693
PF07526140 POX: Associated with HOX; InterPro: IPR006563 This 100.0
smart00574140 POX domain associated with HOX domains. 100.0
KOG0773342 consensus Transcription factor MEIS1 and related H 100.0
KOG0774334 consensus Transcription factor PBX and related HOX 99.78
PF0592040 Homeobox_KN: Homeobox KN domain; InterPro: IPR0084 99.55
KOG0775304 consensus Transcription factor SIX and related HOX 99.41
cd0008659 homeodomain Homeodomain; DNA binding domains invol 99.36
PF0004657 Homeobox: Homeobox domain not present here.; Inter 99.32
smart0038956 HOX Homeodomain. DNA-binding factors that are invo 99.32
KOG0487308 consensus Transcription factor Abd-B, contains HOX 99.11
KOG0842307 consensus Transcription factor tinman/NKX2-3, cont 99.08
KOG0488309 consensus Transcription factor BarH and related HO 98.83
KOG0489261 consensus Transcription factor zerknullt and relat 98.82
KOG0843197 consensus Transcription factor EMX1 and related HO 98.79
KOG0483198 consensus Transcription factor HEX, contains HOX a 98.73
KOG0850245 consensus Transcription factor DLX and related pro 98.73
KOG0493342 consensus Transcription factor Engrailed, contains 98.68
TIGR0156558 homeo_ZF_HD homeobox domain, ZF-HD class. This mod 98.66
KOG0485268 consensus Transcription factor NKX-5.1/HMX1, conta 98.65
KOG0484125 consensus Transcription factor PHOX2/ARIX, contain 98.62
KOG3802398 consensus Transcription factor OCT-1, contains POU 98.61
KOG0492246 consensus Transcription factor MSH, contains HOX d 98.47
COG5576156 Homeodomain-containing transcription factor [Trans 98.46
KOG0848317 consensus Transcription factor Caudal, contains HO 98.45
KOG0486351 consensus Transcription factor PTX1, contains HOX 98.42
KOG0491194 consensus Transcription factor BSH, contains HOX d 98.36
KOG2251228 consensus Homeobox transcription factor [Transcrip 98.33
KOG0494332 consensus Transcription factor CHX10 and related H 98.24
KOG0847288 consensus Transcription factor, contains HOX domai 98.01
KOG4577383 consensus Transcription factor LIM3, contains LIM 97.98
KOG2252558 consensus CCAAT displacement protein and related h 97.89
KOG0844408 consensus Transcription factor EVX1, contains HOX 97.77
KOG0490235 consensus Transcription factor, contains HOX domai 97.55
KOG0849354 consensus Transcription factor PRD and related pro 97.51
KOG1168385 consensus Transcription factor ACJ6/BRN-3, contain 97.26
KOG0773342 consensus Transcription factor MEIS1 and related H 97.03
PF1156956 Homez: Homeodomain leucine-zipper encoding, Homez; 95.42
KOG0490235 consensus Transcription factor, contains HOX domai 94.41
KOG1146 1406 consensus Homeobox protein [General function predi 90.24
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors Back     alignment and domain information 
Probab=100.00  E-value=1.2e-43  Score=334.40  Aligned_cols=139  Identities=49%  Similarity=0.714  Sum_probs=103.8

Q ss_pred             hhcccccchhHHHHHHHHHHhccCCcccccccccccCCCCCCCCcccccCCCCC-CCCCCCCCCCCcCcccChHHHHHHH
Q 005500          172 SVLLSSKYLKAAQELLDEVVNVNNSGISNKSEFSKKGSGNNNSNINKVIGESSA-AAGDDGQSAGKRAAELTTAERQEIQ  250 (693)
Q Consensus       172 ~vl~~SryLk~aQeLL~E~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ls~~er~ElQ  250 (693)
                      +||++|||||||||||||||+|++.............  ...  .......... ..+....+......+++++||+|+|
T Consensus         1 q~l~~SryLk~aQeLL~E~~~v~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~e~q   76 (140)
T PF07526_consen    1 QVLLGSRYLKPAQELLDEFCSVGGANKKKSDDSSSGA--PGG--ANSSGSSSSSGGSSSSSSSSDSSSPELSPAERQELQ   76 (140)
T ss_pred             CccccchhHHHHHHHHHHHHcccchhhhcchhhcccc--ccc--cccCCCCCCCCCCCCCccccCCCCCCCChhhHHHHH
Confidence            5899999999999999999999763221111100000  000  0000000011 0111122334456799999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccCCchhhhHHHHHHHHHHhhhhHHHHHHH
Q 005500          251 MKKAKLINMLDEVEQRYRQYHHQMQIVISSFEQAAGIESAKTYTALALKTISKQFRCLKDAITG  314 (693)
Q Consensus       251 ~Kk~KLl~mLdeVd~RY~qY~~qmq~v~ssFe~~ag~gaa~~yt~laL~~iSr~Fr~LkdaI~~  314 (693)
                      +||+|||+||||||+||+|||+|||+||++||+|||+|+|++||+||||+||||||||||+|++
T Consensus        77 ~kK~KLl~mL~eVd~RY~qY~~Qmq~VvssFe~vaG~gaA~~YtalAlqamSrhFR~LRdaI~~  140 (140)
T PF07526_consen   77 RKKAKLLSMLDEVDRRYRQYYDQMQAVVSSFEAVAGLGAAAPYTALALQAMSRHFRCLRDAISD  140 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999964

>smart00574 POX domain associated with HOX domains Back     alignment and domain information
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription] Back     alignment and domain information
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription] Back     alignment and domain information
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [] Back     alignment and domain information
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription] Back     alignment and domain information
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner Back     alignment and domain information
>PF00046 Homeobox: Homeobox domain not present here Back     alignment and domain information
>smart00389 HOX Homeodomain Back     alignment and domain information
>KOG0487 consensus Transcription factor Abd-B, contains HOX domain [Transcription] Back     alignment and domain information
>KOG0842 consensus Transcription factor tinman/NKX2-3, contains HOX domain [Transcription] Back     alignment and domain information
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only] Back     alignment and domain information
>KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only] Back     alignment and domain information
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription] Back     alignment and domain information
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription] Back     alignment and domain information
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription] Back     alignment and domain information
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only] Back     alignment and domain information
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class Back     alignment and domain information
>KOG0485 consensus Transcription factor NKX-5 Back     alignment and domain information
>KOG0484 consensus Transcription factor PHOX2/ARIX, contains HOX domain [Transcription] Back     alignment and domain information
>KOG3802 consensus Transcription factor OCT-1, contains POU and HOX domains [Transcription] Back     alignment and domain information
>KOG0492 consensus Transcription factor MSH, contains HOX domain [General function prediction only] Back     alignment and domain information
>COG5576 Homeodomain-containing transcription factor [Transcription] Back     alignment and domain information
>KOG0848 consensus Transcription factor Caudal, contains HOX domain [Transcription] Back     alignment and domain information
>KOG0486 consensus Transcription factor PTX1, contains HOX domain [Transcription] Back     alignment and domain information
>KOG0491 consensus Transcription factor BSH, contains HOX domain [General function prediction only] Back     alignment and domain information
>KOG2251 consensus Homeobox transcription factor [Transcription] Back     alignment and domain information
>KOG0494 consensus Transcription factor CHX10 and related HOX domain proteins [General function prediction only] Back     alignment and domain information
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription] Back     alignment and domain information
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription] Back     alignment and domain information
>KOG2252 consensus CCAAT displacement protein and related homeoproteins [Transcription] Back     alignment and domain information
>KOG0844 consensus Transcription factor EVX1, contains HOX domain [Transcription] Back     alignment and domain information
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only] Back     alignment and domain information
>KOG0849 consensus Transcription factor PRD and related proteins, contain PAX and HOX domains [Transcription] Back     alignment and domain information
>KOG1168 consensus Transcription factor ACJ6/BRN-3, contains POU and HOX domains [Transcription] Back     alignment and domain information
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription] Back     alignment and domain information
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A Back     alignment and domain information
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only] Back     alignment and domain information
>KOG1146 consensus Homeobox protein [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query693
3k2a_A67 Crystal Structure Of The Homeobox Domain Of Human H 9e-13
1x2n_A73 Solution Structure Of The Homeobox Domain Of Human 3e-12
2dmn_A83 The Solution Structure Of The Homeobox Domain Of Hu 6e-11
2lk2_A89 Solution Nmr Structure Of Homeobox Domain (171-248) 1e-10
1lfu_P82 Nmr Solution Stucture Of The Extended Pbx Homeodoma 1e-08
1du6_A64 Solution Structure Of The Truncated Pbx Homeodomain 9e-08
1puf_B73 Crystal Structure Of Hoxa9 And Pbx1 Homeodomains Bo 1e-07
1b72_B87 Pbx1, Homeobox Protein Hox-B1DNA TERNARY COMPLEX Le 1e-07
1b8i_B63 Structure Of The Homeotic UbxEXDDNA TERNARY COMPLEX 2e-07
4egc_A559 Crystal Structure Of Mbp-fused Human Six1 Bound To 5e-06
>pdb|3K2A|A Chain A, Crystal Structure Of The Homeobox Domain Of Human Homeobox Protein Meis2 Length = 67 Back     alignment and structure 
Iteration: 1

 Score = 72.0 bits (175), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 43/59 (72%)
Query: 368 LPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVRLWKPMVEE 426
            P+ + ++ RAWLF+H  HPYP +  K+ LA+ TGLT  QV+NWFINAR R+ +P +++
Sbjct: 5   FPKVATNIXRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPXIDQ 63
>pdb|1X2N|A Chain A, Solution Structure Of The Homeobox Domain Of Human Homeobox Protein Pknox1 Length = 73 Back     alignment and structure
>pdb|2DMN|A Chain A, The Solution Structure Of The Homeobox Domain Of Human Homeobox Protein Tgif2lx Length = 83 Back     alignment and structure
>pdb|2LK2|A Chain A, Solution Nmr Structure Of Homeobox Domain (171-248) Of Human Homeobox Protein Tgif1, Northeast Structural Genomics Consortium Target Hr4411b Length = 89 Back     alignment and structure
>pdb|1LFU|P Chain P, Nmr Solution Stucture Of The Extended Pbx Homeodomain Bound To Dna Length = 82 Back     alignment and structure
>pdb|1DU6|A Chain A, Solution Structure Of The Truncated Pbx Homeodomain Length = 64 Back     alignment and structure
>pdb|1PUF|B Chain B, Crystal Structure Of Hoxa9 And Pbx1 Homeodomains Bound To Dna Length = 73 Back     alignment and structure
>pdb|1B72|B Chain B, Pbx1, Homeobox Protein Hox-B1DNA TERNARY COMPLEX Length = 87 Back     alignment and structure
>pdb|1B8I|B Chain B, Structure Of The Homeotic UbxEXDDNA TERNARY COMPLEX Length = 63 Back     alignment and structure
>pdb|4EGC|A Chain A, Crystal Structure Of Mbp-fused Human Six1 Bound To Human Eya2 Eya Domain Length = 559 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query693
1b72_B87 Protein (PBX1); homeodomain, DNA, complex, DNA-bin 2e-38
2lk2_A89 Homeobox protein TGIF1; NESG, structural genomics, 3e-36
2dmn_A83 Homeobox protein TGIF2LX; TGFB-induced factor 2-li 1e-35
1puf_B73 PRE-B-cell leukemia transcription factor-1; homeod 4e-35
3k2a_A67 Homeobox protein MEIS2; homeobox domain, DNA-bindi 2e-33
1x2n_A73 Homeobox protein pknox1; homeobox domain, structur 5e-33
1du6_A64 PBX1, homeobox protein PBX1; homeodomain, gene reg 2e-31
1k61_A60 Mating-type protein alpha-2; protein-DNA complex, 2e-27
1le8_B83 Mating-type protein alpha-2; matalpha2, isothermal 6e-27
1mnm_C87 Protein (MAT alpha-2 transcriptional repressor); t 7e-26
3nau_A66 Zinc fingers and homeoboxes protein 2; ZHX2, corep 1e-07
2da5_A75 Zinc fingers and homeoboxes protein 3; homeobox do 4e-07
2d5v_A164 Hepatocyte nuclear factor 6; transcription factor, 4e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
2dn0_A76 Zinc fingers and homeoboxes protein 3; triple home 2e-06
2ecb_A89 Zinc fingers and homeoboxes protein 1; homeobox do 5e-06
2ecc_A76 Homeobox and leucine zipper protein homez; homeobo 2e-05
2dmp_A89 Zinc fingers and homeoboxes protein 2; homeobox do 2e-05
1wi3_A71 DNA-binding protein SATB2; homeodomain, helix-turn 4e-05
3nar_A96 ZHX1, zinc fingers and homeoboxes protein 1; corep 7e-05
2cqx_A72 LAG1 longevity assurance homolog 5; homeodomain, D 2e-04
1akh_A61 Protein (mating-type protein A-1); complex (TWO DN 6e-04
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P Length = 87 Back     alignment and structure
 Score =  136 bits (343), Expect = 2e-38
 Identities = 27/85 (31%), Positives = 44/85 (51%)

Query: 361 AWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVRLW 420
           A R +R   +++  +L  + + H  +PYP +  K+ LAK+ G+T SQVSNWF N R+R  
Sbjct: 1   ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 60

Query: 421 KPMVEEMYLEEIKDQEQNGSEDKTS 445
           K + +      I   +   +    S
Sbjct: 61  KNIGKFQEEANIYAAKTAVTATNVS 85
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens} Length = 89 Back     alignment and structure
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens} Length = 83 Back     alignment and structure
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B* Length = 73 Back     alignment and structure
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} Length = 67 Back     alignment and structure
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 73 Back     alignment and structure
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1 Length = 64 Back     alignment and structure
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1 Length = 60 Back     alignment and structure
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B* Length = 83 Back     alignment and structure
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1 Length = 87 Back     alignment and structure
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens} Length = 66 Back     alignment and structure
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75 Back     alignment and structure
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A Length = 164 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 76 Back     alignment and structure
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 89 Back     alignment and structure
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 76 Back     alignment and structure
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 89 Back     alignment and structure
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 71 Back     alignment and structure
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens} Length = 96 Back     alignment and structure
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Length = 72 Back     alignment and structure
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A* Length = 61 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 693
d1x2na162 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (H 7e-19
d1pufb_73 a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 96 3e-18
d1k61a_60 a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast 1e-15
d2cqxa159 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5e-08
d1x2ma152 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 3e-07
d1le8a_53 a.4.1.1 (A:) Mating type protein A1 Homeodomain {B 1e-06
d1wh7a_80 a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Tha 4e-06
d1b72a_88 a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo 6e-06
d1wi3a_71 a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Hom 2e-05
d1ocpa_67 a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus mus 4e-05
d1s7ea150 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {M 8e-05
d2cuea168 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (H 1e-04
d1p7ia_53 a.4.1.1 (A:) Engrailed Homeodomain {Drosophila mel 1e-04
d2e1oa157 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo 1e-04
d1bw5a_66 a.4.1.1 (A:) Insulin gene enhancer protein isl-1 { 1e-04
d9anta_56 a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila 2e-04
d2craa158 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human ( 5e-04
d1au7a158 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Ra 7e-04
d2ecba176 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes prote 0.001
d1pufa_77 a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus m 0.001
d1ftta_68 a.4.1.1 (A:) Thyroid transcription factor 1 homeod 0.001
d1uhsa_72 a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse 0.001
d1fjla_65 a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila 0.002
d1jgga_57 a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly ( 0.002
d1e3oc157 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human ( 0.002
d1yz8p160 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo 0.003
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]} Length = 62 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeobox protein pknox1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.6 bits (194), Expect = 7e-19
 Identities = 30/58 (51%), Positives = 44/58 (75%), Gaps = 1/58 (1%)

Query: 363 RPQRG-LPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVRL 419
           + +RG LP+ + +V+R+WLF+H  HPYP + +K+ +A QT LT  QV+NWFINAR R+
Sbjct: 3   KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRI 60
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]} Length = 73 Back     information, alignment and structure
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 60 Back     information, alignment and structure
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 59 Back     information, alignment and structure
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 53 Back     information, alignment and structure
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 80 Back     information, alignment and structure
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71 Back     information, alignment and structure
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Length = 67 Back     information, alignment and structure
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 Back     information, alignment and structure
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 Back     information, alignment and structure
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]} Length = 53 Back     information, alignment and structure
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]} Length = 57 Back     information, alignment and structure
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 66 Back     information, alignment and structure
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]} Length = 56 Back     information, alignment and structure
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]} Length = 58 Back     information, alignment and structure
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 58 Back     information, alignment and structure
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76 Back     information, alignment and structure
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 77 Back     information, alignment and structure
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 68 Back     information, alignment and structure
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]} Length = 72 Back     information, alignment and structure
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 65 Back     information, alignment and structure
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 57 Back     information, alignment and structure
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]} Length = 57 Back     information, alignment and structure
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query693
d1pufb_73 pbx1 {Human (Homo sapiens) [TaxId: 9606]} 99.66
d1x2na162 Homeobox protein pknox1 {Human (Homo sapiens) [Tax 99.64
d1k61a_60 mat alpha2 Homeodomain {Baker's yeast (Saccharomyc 99.58
d1wi3a_71 DNA-binding protein SATB2 {Human (Homo sapiens) [T 99.37
d1pufa_77 Homeobox protein hox-a9 {Mouse (Mus musculus) [Tax 99.34
d2ecca176 Homeobox-leucine zipper protein Homez {Human (Homo 99.34
d1fjla_65 Paired protein {Fruit fly (Drosophila melanogaster 99.32
d1vnda_77 VND/NK-2 protein {Fruit fly (Drosophila melanogast 99.32
d1bw5a_66 Insulin gene enhancer protein isl-1 {Rat (Rattus n 99.31
d1ocpa_67 Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId 99.31
d2craa158 Homeobox protein hox-b13 {Human (Homo sapiens) [Ta 99.3
d2e1oa157 Homeobox protein prh {Human (Homo sapiens) [TaxId: 99.29
d1b72a_88 Homeobox protein hox-b1 {Human (Homo sapiens) [Tax 99.28
d1au7a158 Pit-1 POU homeodomain {Rat (Rattus norvegicus) [Ta 99.27
d2ecba176 Zinc fingers and homeoboxes protein 1, ZHX1 {Human 99.27
d1ftta_68 Thyroid transcription factor 1 homeodomain {Rat (R 99.26
d1ig7a_58 Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10 99.26
d1zq3p167 Homeotic bicoid protein {Fruit fly (Drosophila mel 99.25
d1le8a_53 Mating type protein A1 Homeodomain {Baker's yeast 99.25
d1yz8p160 Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 99.23
d2cuea168 Paired box protein pax6 {Human (Homo sapiens) [Tax 99.23
d1p7ia_53 Engrailed Homeodomain {Drosophila melanogaster [Ta 99.22
d1e3oc157 Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId 99.21
d2cufa182 Homeobox-containing protein 1, HMBOX1 (Flj21616) { 99.21
d1jgga_57 Even-skipped homeodomain {Fruit fly (Drosophila me 99.2
d9anta_56 Antennapedia Homeodomain {Drosophila melanogaster 99.2
d1uhsa_72 Homeodomain-only protein, Hop {Mouse (Mus musculus 99.16
d1wh7a_80 ZF-HD homeobox protein At4g24660 {Thale cress (Ara 99.14
d1x2ma152 Lag1 longevity assurance homolog 6, LASS6 {Mouse ( 99.05
d1lfba_78 Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rat 99.04
d1s7ea150 Hepatocyte nuclear factor 6 {Mouse (Mus musculus) 99.02
d2cqxa159 LAG1 longevity assurance homolog 5, LASS5 {Mouse ( 99.02
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: pbx1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3.9e-17  Score=120.99  Aligned_cols=63  Identities=38%  Similarity=0.710  Sum_probs=58.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCHHHH
Q ss_conf             999999996589999999998308999998999999999599914340010033420371447
Q 005500          362 WRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVRLWKPMV  424 (693)
Q Consensus       362 kRkrR~Lpk~a~~iLr~Wf~eH~~nPYPS~~eK~~LAkqTGLS~kQVsNWFiNaR~R~kKpmv  424 (693)
                      +|+++.|++.++.+|+.||.+|..+|||+.++|..||..|||+++||.+||+|+|+|.|+...
T Consensus         2 rk~R~~~t~~q~~~Le~~f~~~~~~pYPs~~~k~~La~~~gl~~~qv~~WF~N~R~r~k~~~~   64 (73)
T d1pufb_           2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG   64 (73)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCH
T ss_conf             999987899999999999998437889999999999999793999969988998987430536
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1 (Flj21616) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rattus rattus) [TaxId: 10117]} Back     information, alignment and structure
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure