Query 005501
Match_columns 693
No_of_seqs 347 out of 3395
Neff 9.6
Searched_HMMs 29240
Date Tue Mar 26 18:12:53 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005501.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2009-2012//hhsearch_pdb/005501hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vsq_A Surfactin synthetase su 1.0 1 1 755.1 25.6 610 13-692 301-937 (1304)
2 1ry2_A Acetyl-coenzyme A synth 1.0 1 1 647.9 54.1 562 114-693 19-615 (663)
3 1pg4_A Acetyl-COA synthetase; 1.0 1 1 647.2 54.8 554 120-693 23-599 (652)
4 3tsy_A Fusion protein 4-coumar 1.0 1 1 617.3 42.6 532 120-692 12-559 (979)
5 4dg8_A PA1221; ANL superfamily 1.0 1 1 597.7 40.7 443 185-693 36-491 (620)
6 3g7s_A Long-chain-fatty-acid-- 1.0 1 1 596.6 42.7 474 185-692 28-519 (549)
7 3ni2_A 4-coumarate:COA ligase; 1.0 1 1 591.9 45.3 467 185-693 31-513 (536)
8 4gr5_A Non-ribosomal peptide s 1.0 1 1 589.0 34.0 452 185-692 84-548 (570)
9 3etc_A AMP-binding protein; ad 1.0 1 1 588.5 47.4 526 127-692 15-556 (580)
10 1mdb_A 2,3-dihydroxybenzoate-A 1.0 1 1 581.6 40.0 465 185-693 34-509 (539)
No 1
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=1.00 E-value=1 Score=755.09 Aligned_cols=610 Identities=16% Similarity=0.154 Sum_probs=488.9
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCC---------
Q ss_conf 9881999056689999999998630599-836687999996731889988874145678755012378999---------
Q 005501 13 LMKVGLKLEEAEEFDKILKQVISCSKGL-DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP--------- 82 (693)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~hq~~pfe~~l~~~l~~~r~~~~~~~plf~v~~~~~~~~~~~--------- 82 (693)
.+++++...+..+|.++|+++++...++ +||++||++ |++.++ .+ |+||+||+++|.....
T Consensus 301 tlplr~~~~~~~s~~~ll~~v~~~~~~a~~hq~~p~~~-i~~~l~------~~--~lf~~~~~~~~~~~~~~~~~~~~~~ 371 (1304)
T 2vsq_A 301 VVPRRVKLSEGITFNGLLKRLQEQSLQSEPHQYVPLYD-IQSQAD------QP--KLIDHIIVFENYPLQDAKNEESSEN 371 (1304)
T ss_dssp EEEEEEECCTTCBHHHHHHHHHHHHHHHGGGTTSCHHH-HHHSSS------CS--SSCCCEEEECSSCHHHHSCCCHHHH
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHC------CC--CCCCEEEEEEECCCCCCCCCCCCCC
T ss_conf 79887427999949999999999999865402599999-999737------89--6654357885035544322211357
Q ss_pred CCCCCCC-CCCCCCCCHHHHHHHHCCCCCCCC-CCCCCCCHHHHHHHHHHCHHHHHHHHHHHCCCCEECCCEEE--CCCC
Q ss_conf 9645689-000022656899998199644555-68998788899999825999999999854552033066020--1388
Q 005501 83 PLYWFPS-LDQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LDRT 158 (693)
Q Consensus 83 ~~~~~~~-~~~~~~~dl~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~ 158 (693)
.....+. ....++|||++.+. .++++.+.+ |+. ++|++.+++++.++|.++|+++...++.+...+ +...
T Consensus 372 g~~~~~~~~~~~~~~dL~l~~~-~~~~l~~~~~y~~-----~lf~~~~i~~l~~~~~~lL~~l~~~p~~~~~~~~~l~~~ 445 (1304)
T 2vsq_A 372 GFDMVDVHVFEKSNYDLNLMAS-PGDEMLIKLAYNE-----NVFDEAFILRLKSQLLTAIQQLIQNPDQPVSTINLVDDR 445 (1304)
T ss_dssp SEEEEEEEECCCCCSSEEEEEE-CSSSCEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHHHHSTTSBGGGCCCCCHH
T ss_pred CCEEEEEECCCCCCCCEEEEEE-CCCCEEEEEEECC-----CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
T ss_conf 8416750025656647699996-4992899999877-----657899999999999999997434965543456778979
Q ss_pred CCCCCCCCCCCCCCCCHHHHHCC--CCCCCCCCCCCEEEEEECCCCCCCCCEEECHHHHHHHHHHHHHHHHHH-CCCCCE
Q ss_conf 88899998698995406323016--766678999947999943788888621540999999999999999860-699999
Q 005501 159 DKSKHGGTWLPGSVLNIAECCLL--PSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDA 235 (693)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~l~--~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTy~eL~~~~~~lA~~L~~~-v~~gd~ 235 (693)
++......|+........ .++. +..+++++||++|+++.++ ++||+||+++++++|++|++. +++|++
T Consensus 446 e~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~p~~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~g~~ 516 (1304)
T 2vsq_A 446 EREFLLTGLNPPAQAHET-KPLTYWFKEAVNANPDAPALTYSGQ--------TLSYRELDEEANRIARRLQKHGAGKGSV 516 (1304)
T ss_dssp HHHHHHTTTSCCCCCCCC-CCHHHHHHHHHHHCTTSEEEESSSC--------EEEHHHHHHHHHHHHHHHHHTTCCTTCE
T ss_pred HHHHHHHHCCCCCCCCCC-CCHHHHHHHHHHHCCCCEEEEECCE--------EECHHHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf 999998750788888888-9899999999976899859997990--------5729999999999999999669688399
Q ss_pred EEEECCCCHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHCCEEEEEEECCEEECCCCCCCHHHHHHCCCCCEEEEC
Q ss_conf 99984999999999999999076898438999999999999841905999606421079524543667300898359981
Q 005501 236 IAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLP 315 (693)
Q Consensus 236 V~i~~~~s~~~iv~~lA~~~aG~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (693)
|+|+++||+++++++|||+|+|++|+|+||.+|.+++.++++++++++++++.........++ .....+.+.
T Consensus 517 V~i~~~~s~~~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~--------~~~~~~~~~ 588 (1304)
T 2vsq_A 517 VALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELP--------YTGTTLFID 588 (1304)
T ss_dssp EEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCC--------CCSEEEESS
T ss_pred EEEEECCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHCCCCEEEECCCHHHHHHCCC--------CCCCEEEEC
T ss_conf 999969889999999999997988998888798999999999769999997812343431057--------777379843
Q ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEECCHHHHHHHHHHCHHCCCC
Q ss_conf 87888888777776637887301699999998887668999927999146998986658953506899998730413788
Q 005501 316 AIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLK 395 (693)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~ 395 (693)
. . ..... .. ........++++|||+|||||||+||||+++|+++.+. .+....++++
T Consensus 589 ~------------~---~~~~~-~~------~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~ 645 (1304)
T 2vsq_A 589 D------------Q---TRFEE-QA------SDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFS 645 (1304)
T ss_dssp C------------G---GGGGS-CS------SCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCC
T ss_pred C------------C---CCCCC-CC------CCCCCCCCCCCEEEEEECCCCCCCCCEEEEEHHHHHHH-HHHHHHCCCC
T ss_conf 6------------2---22235-66------77777899887179996888889998899751889999-9999861989
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEECC--CCCHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 89899982786200225887988870978999369--9990239999998199199402699999991596899997660
Q 005501 396 VGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG--SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKI 473 (693)
Q Consensus 396 ~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lvi~~~--~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~l 473 (693)
+++++++++|++|+.+.+++|.+|+.|+++++.+. ..++..+.+.|+++++|++.++|++++.+.+.. ...+++|
T Consensus 646 ~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~---~~~~~~l 722 (1304)
T 2vsq_A 646 DQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG---EDWMKGL 722 (1304)
T ss_dssp TTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC---SHHHHTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCEEEECCHHHCCCHHHHHHHHHHCCCCEEECCHHHHHHHHHHC---HHCCCCC
T ss_conf 8887999787129999999999997077999888121089999999999829959996599999998514---0017886
Q ss_pred CEEEEECCCCCCCHHHHHHHHCCCCCEECCCCCCCCCCEECCCCCC---CCCCCCCCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 0799425999920189998607788531241344344402258867---8776475577889954999879999779999
Q 005501 474 RSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL---QPQAFGAFSTATMTAGLVILDECGVPYPDDQ 550 (693)
Q Consensus 474 r~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~---~~~~~~~iG~p~~~~~~~i~d~~g~~~p~g~ 550 (693)
|.+++|||+++++..+.+.+.+++++++|.||+||+++.++..... ......++|+|++|++++|+|++++++|.|+
T Consensus 723 r~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~ 802 (1304)
T 2vsq_A 723 RCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFGA 802 (1304)
T ss_dssp SEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEECTTSCBCCTTC
T ss_pred CEEEEECCCCCHHHHHHHHHHCCCCEEEEEECHHHHHHHHEEEECCCCCCCCCCCCCCEEECCCEEEEECCCCCCCCCCC
T ss_conf 48999468899999999998689987998277568758760654557666677798850407978999899969998998
Q ss_pred CCEEEEEE-----ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEECCCCEEEEEECCCCCCCCCEEEEHH
Q ss_conf 81026998-----2445798632246423232122254578841465364599944982999954388212497443037
Q 005501 551 PCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSV 625 (693)
Q Consensus 551 ~~iGel~v-----~~~y~~~~~~~~~~~~t~~~f~~~~~~~g~~~y~TGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~ 625 (693)
+ |||+| +.||++ ++++|+++|..+|+.+|.+||||||+|++++||+|+|+||+|+|||++|+||+|+
T Consensus 803 ~--GEl~i~G~~v~~GY~~------~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~ 874 (1304)
T 2vsq_A 803 V--GELCISGMGVSKGYVN------RADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELE 874 (1304)
T ss_dssp C--EEEEEEETTCCCCBTT------CHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHH
T ss_pred C--EEEEEECCCCCCCCCC------CCCCCHHHHCCCCCCCCCEEEECCCEEEECCCCEEEEECCCCCEEEECCEEECHH
T ss_conf 4--4999833422723248------9644614314699999981685687689869980999767789799898965889
Q ss_pred HHHHHHHCCCCCCCEEEEEEECCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEC
Q ss_conf 7999972049651102899653899995179999996399999968999999999984249983210
Q 005501 626 EIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 626 eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~L~~~~~P~~~v~ 692 (693)
|||++|. +||+|++|+|++.++..++ +.++||++.+. ..+.++++++|+++||.||+|..++.
T Consensus 875 eIE~~l~-~~p~V~~a~V~~~~~~~~~-~~l~a~vv~~~--~~~~~~l~~~l~~~Lp~ymvP~~~~~ 937 (1304)
T 2vsq_A 875 EIEKQLQ-EYPGVKDAVVVADRHESGD-ASINAYLVNRT--QLSAEDVKAHLKKQLPAYMVPQTFTF 937 (1304)
T ss_dssp HHHHHHH-HSSSCCEEEEEEECCSSSC-CEEEEEEECSS--SSCHHHHHHHHHHHSCGGGSCSEEEE
T ss_pred HHHHHHH-HCCCCCEEEEEEEECCCCC-EEEEEEEECCC--CCCHHHHHHHHHHHCHHHHHCCEEEE
T ss_conf 9999998-5899755899997469997-79999996789--89999999999886808651537999
No 2
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=1.00 E-value=1 Score=647.88 Aligned_cols=562 Identities=22% Similarity=0.319 Sum_probs=450.1
Q ss_pred CCCCCCCHHHHHHHHHHCHHHHHHHHHHHCCCCEECCCEEECCCC---C-CCCCCCCCCCCCCCCHHHHHCCCCCCCCCC
Q ss_conf 689987888999998259999999998545520330660201388---8-889999869899540632301676667899
Q 005501 114 YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRT---D-KSKHGGTWLPGSVLNIAECCLLPSNHRRKE 189 (693)
Q Consensus 114 y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~---~-~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~ 189 (693)
+...+.+|+.+++++++++..||..+++.. +.|.+++.++++.. . ...+..+||.++.+|.+.+++++++ +.+
T Consensus 19 ~~~~~~~y~~~~~~s~~~~~~fw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~a--~~~ 95 (663)
T 1ry2_A 19 SHMGLQDYQRLHKESIEDPAKFFGSKATQF-LNWSKPFDKVFIPDPKTGRPSFQNNAWFLNGQLNACYNCVDRHA--LKT 95 (663)
T ss_dssp -----CHHHHHHHHHHHCHHHHHHHHHHHH-CCEEECCSCSBCBCSSSCSBCSTTCCBSTTCEECHHHHHTHHHH--TTC
T ss_pred CCCCHHHHHHHHHHHHCCHHHHHHHHHHHC-CEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH--CCC
T ss_conf 579856699999998649999999998544-73536982543476423468887787699899129999999874--468
Q ss_pred CCCEEEEEECCCCCCCCCEEECHHHHHHHHHHHHHHHH-HH-CCCCCEEEEECCCCHHHHHHHHHHHHHCCEEEECCCCC
Q ss_conf 99479999437888886215409999999999999998-60-69999999984999999999999999076898438999
Q 005501 190 DNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALD-TM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSF 267 (693)
Q Consensus 190 pd~~Al~~~~~~~~~~~~~~lTy~eL~~~~~~lA~~L~-~~-v~~gd~V~i~~~~s~~~iv~~lA~~~aG~~~vpl~~~~ 267 (693)
||++|+++.+. ..+..+++||+||.++++++|++|+ ++ +++||+|+|+++|++++++++|||+++|++++|+++.+
T Consensus 96 pd~~Al~~~~~--~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav~vpl~~~~ 173 (663)
T 1ry2_A 96 PNKKAIIFEGD--EPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGF 173 (663)
T ss_dssp TTSEEEEEECS--STTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTS
T ss_pred CCCEEEEEECC--CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 99659999848--9995189889999999999999989845999999999980899999999999998097999417988
Q ss_pred CHHHHHHHHHHCCEEEEEEECCEEECCCCCCCHHHHHHC---CC--CCEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCC
Q ss_conf 999999999841905999606421079524543667300---89--8359981878888887777766378873016999
Q 005501 268 AAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA---AP--LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (693)
Q Consensus 268 ~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (693)
+.+++.+++++++++++|+++......+.++....+.+. .+ ..++++................+|.++......
T Consensus 174 ~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 252 (663)
T 1ry2_A 174 SSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKT- 252 (663)
T ss_dssp CHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEEEHHHHHTTSCS-
T ss_pred CHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCC-
T ss_conf 9899999998659739998366233883213699999999748997569998168877666577762449999853477-
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEECCHHHHHHHH-HHCHHCCCCCCCEEEEECCCCCCCHH-HHHHHHHH
Q ss_conf 99998887668999927999146998986658953506899998-73041378889899982786200225-88798887
Q 005501 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA-EGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFL 420 (693)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~-~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~ 420 (693)
........+++++||+|||||||+||||+++|+++..... .....++++++|++++.+|++|+.+. +.++.+|+
T Consensus 253 ----~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~ 328 (663)
T 1ry2_A 253 ----YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLL 328 (663)
T ss_dssp ----CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHH
T ss_pred ----CCCCCCCCCCCCEEEEECCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf ----7886446888865888426888898468976168999999999973189988689985784775522899999997
Q ss_pred CCCEEEEECCC---CCHHHHHHHHHHCCCCEEEECHHHHHHHHHCCC--CCCCCCCCCCEEEEECCCCCCCHHHHHHHHC
Q ss_conf 09789993699---990239999998199199402699999991596--8999976600799425999920189998607
Q 005501 421 NGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKA 495 (693)
Q Consensus 421 ~G~~lvi~~~~---~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~ 495 (693)
.|++++++++. +++..+++.|+++++|++.++|++++.|.+... ....++++||.++++||++++++.+++.+.+
T Consensus 329 ~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~ 408 (663)
T 1ry2_A 329 YGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKI 408 (663)
T ss_dssp HTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTT
T ss_pred HCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 28789998998898998999999998099899815999999985395423347867467999875889999999999973
Q ss_pred C--CCCEECCCCCCCCCCEECCCCC--CCCCCCCCCCCCCCCCEEEEECC-CCCCCCC-CCCCEEEEEEECCCCCCCCCC
Q ss_conf 7--8853124134434440225886--78776475577889954999879-9997799-998102699824457986322
Q 005501 496 W--YNAIIESCGGTELSSAYIQGSL--LQPQAFGAFSTATMTAGLVILDE-CGVPYPD-DQPCVGEVGLFPLYLGASDRL 569 (693)
Q Consensus 496 ~--~~~i~~~YG~TE~~~~~~~~~~--~~~~~~~~iG~p~~~~~~~i~d~-~g~~~p~-g~~~iGel~v~~~y~~~~~~~ 569 (693)
+ .++++|.||+||+++.++.... ..+...+++|+|++|++++|+|+ +|++++. |+ .|||++.....+...+|
T Consensus 409 g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~--~Gel~i~g~~p~~~~gy 486 (663)
T 1ry2_A 409 GKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHA--EGVLAVKAAWPSFARTI 486 (663)
T ss_dssp SCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSC--EEEEEESSCCTTSCCEE
T ss_pred CCCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC--CEEEEEECCCCCHHCCC
T ss_conf 9888559973777301584531688787566788566576897699985999976888886--10799926887100520
Q ss_pred CC-CCCCCCCCCCCCCCCCCEEEEECCEEEEECCCCEEEEEECCCCCCCCCEEEEHHHHHHHHHCCCCCCCEEEEEEECC
Q ss_conf 46-42323212225457884146536459994498299995438821249744303779999720496511028996538
Q 005501 570 LN-ADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSP 648 (693)
Q Consensus 570 ~~-~~~t~~~f~~~~~~~g~~~y~TGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~ 648 (693)
++ ++.+.+.|.. ...+||+|||+|++++||+++|+||+||+||++|+||+|.|||++|. +||+|.+|+|+++++
T Consensus 487 ~~~~~~~~~~~~~----~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~-~~p~V~ea~Vvg~~~ 561 (663)
T 1ry2_A 487 WKNHDRYLDTYLN----PYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAII-EDPIVAECAVVGFND 561 (663)
T ss_dssp TTCHHHHHHHHTS----SSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHH-SSTTEEEEEEECCCC
T ss_pred CCCHHHHHHHHHC----CCCCEEECCCEEEECCCCCEEEEEECCCEEEECCEECCHHHHHHHHH-HCCCCCEEEEEEEEC
T ss_conf 0685888986502----79987885977998489978998554898988999827999999998-589824189997765
Q ss_pred CCCCCEEEEEEEEECCCCC---C-C------HHHHHHHHHHHHHHHCCCCCEECC
Q ss_conf 9999517999999639999---9-9------689999999999842499832109
Q 005501 649 AGGGPEVLVIFVVLKKGFT---S-Q------PDKLKMIFSKAIQSKLNPLFKVWC 693 (693)
Q Consensus 649 ~~~g~~~l~a~vv~~~~~~---~-~------~~~l~~~l~~~L~~~~~P~~~v~~ 693 (693)
+..| +.++|||+++++.. . + .++++++++++|+.||+|..++++
T Consensus 562 ~~~g-~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v 615 (663)
T 1ry2_A 562 DLTG-QAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILV 615 (663)
T ss_dssp CTTS-CCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEEC
T ss_pred CCCC-EEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC
T ss_conf 7888-17999999757876555564368999999999999767977477089993
No 3
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=1.00 E-value=1 Score=647.20 Aligned_cols=554 Identities=25% Similarity=0.365 Sum_probs=446.0
Q ss_pred CHHHHHHHHHHCHHHHHHHHHHHCCCCEECCCEEECCCCCC-CCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCEEEEEE
Q ss_conf 88899999825999999999854552033066020138888-89999869899540632301676667899994799994
Q 005501 120 SFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDK-SKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWR 198 (693)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~ 198 (693)
+|..+++++++++..||..+++. +.|.+++.+++..... ..+..+||.++.+|.+.+++++++ +.+||++|+++.
T Consensus 23 ~y~~l~~~~~~~p~~~w~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~a--~~~pd~~Al~~~ 98 (652)
T 1pg4_A 23 QYETKYKQSINDPDTFWGEQGKI--LDWITPYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHL--QENGDRTAIIWE 98 (652)
T ss_dssp HHHHHHHHHHHCHHHHHHHHGGG--SCCSBCCSCCEEEECCTTCCEEEESTTCEECHHHHHTGGGH--HHHTTSEEEEEE
T ss_pred HHHHHHHHHHCCHHHHHHHHHHH--CCEECCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHH--CCCCCCEEEEEE
T ss_conf 89999999865999999999712--93516985402576566898787799988029999999875--457996699997
Q ss_pred CCCCCCCCCEEECHHHHHHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHH
Q ss_conf 3788888621540999999999999999860-699999999849999999999999990768984389999999999998
Q 005501 199 EDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLR 277 (693)
Q Consensus 199 ~~~~~~~~~~~lTy~eL~~~~~~lA~~L~~~-v~~gd~V~i~~~~s~~~iv~~lA~~~aG~~~vpl~~~~~~~~l~~~l~ 277 (693)
+. +.+..+++||+||.++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++++
T Consensus 99 ~~--~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~ 176 (652)
T 1pg4_A 99 GD--DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCII 176 (652)
T ss_dssp CS--STTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHH
T ss_pred CC--CCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH
T ss_conf 37--9996269739999999999999999849999998999917999999999999985958981689889899999998
Q ss_pred HCCEEEEEEECCEEECCCCCCCHHHHHH---CC----CCCEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCC
Q ss_conf 4190599960642107952454366730---08----9835998187888888777776637887301699999998887
Q 005501 278 VSKAKGIFTQDFILRGGRKFPLYSKVLG---AA----PLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP 350 (693)
Q Consensus 278 ~~~~~~ii~~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (693)
+++++++|+++......+.++....+.+ .. ...++++......... .......|+++...... ....
T Consensus 177 ~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~ 250 (652)
T 1pg4_A 177 DSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEKASP-----EHQP 250 (652)
T ss_dssp HHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCC-CBTTEEEHHHHHTTSCS-----CCCC
T ss_pred HCCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC-CCCCCEEHHHHHHHCCC-----CCCC
T ss_conf 45998999767422388634539999999841886787779999688876565-67874019999852577-----7786
Q ss_pred CCCCCCCEEEEEECCCCCCCCCEEEECCHHHHHHHH-HHCHHCCCCCCCEEEEECCCCCCCHH-HHHHHHHHCCCEEEEE
Q ss_conf 668999927999146998986658953506899998-73041378889899982786200225-8879888709789993
Q 005501 351 VYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA-EGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALY 428 (693)
Q Consensus 351 ~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~-~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~G~~lvi~ 428 (693)
....+++++||+|||||||+||||+++|++++.... .....++++++|++++++|++|+.++ +.++.+|+.|+++++.
T Consensus 251 ~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~ 330 (652)
T 1pg4_A 251 EAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMF 330 (652)
T ss_dssp CCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEECHHHHHHHHHHCCCEEEEE
T ss_conf 55587787799842688879845898753999999999998308999878999168734420078889889748559998
Q ss_pred CCC---CCHHHHHHHHHHCCCCEEEECHHHHHHHHHCCC--CCCCCCCCCCEEEEECCCCCCCHHHHHHHHCC--CCCEE
Q ss_conf 699---990239999998199199402699999991596--89999766007994259999201899986077--88531
Q 005501 429 QGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW--YNAII 501 (693)
Q Consensus 429 ~~~---~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~--~~~i~ 501 (693)
++. +++..+++.|+++++|++.++|++++.|.+... ....++++||.++++||++++++.+++.+.++ .++++
T Consensus 331 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~ 410 (652)
T 1pg4_A 331 EGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVV 410 (652)
T ss_dssp CSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEE
T ss_pred CCCCCCCCHHHHHHHHHHHCCEEEEECHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCEE
T ss_conf 99888999899999999859909985799999998448432234896735899984588999999999998398787477
Q ss_pred CCCCCCCCCCEECCCCC-CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCC-CCCCCCC
Q ss_conf 24134434440225886-787764755778899549998799997799998102699824457986322464-2323212
Q 005501 502 ESCGGTELSSAYIQGSL-LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNA-DHEEVYF 579 (693)
Q Consensus 502 ~~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~~~~~~i~d~~g~~~p~g~~~iGel~v~~~y~~~~~~~~~~-~~t~~~f 579 (693)
|.||+||+++.++.... ......+++|+|++|++++|+|++|+++|.|+ .|||++...+.+...+|++. +.+.+.|
T Consensus 411 ~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d~~g~~v~~g~--~GEl~i~g~~p~~~~gY~~~~e~~~~~~ 488 (652)
T 1pg4_A 411 DTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGAT--EGNLVITDSWPGQARTLFGDHERFEQTY 488 (652)
T ss_dssp EEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSE--EEEEEECSCCTTCCCEETTCHHHHHHHH
T ss_pred CCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC--EEEEEECCCCCCHHHHHCCCHHHHHHHH
T ss_conf 33257650464003798876766786566768975899999998967996--1899991488842644408777777644
Q ss_pred CCCCCCCCCEEEEECCEEEEECCCCEEEEEECCCCCCCCCEEEEHHHHHHHHHCCCCCCCEEEEEEECCCCCCCEEEEEE
Q ss_conf 22545788414653645999449829999543882124974430377999972049651102899653899995179999
Q 005501 580 RGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIF 659 (693)
Q Consensus 580 ~~~~~~~g~~~y~TGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~ 659 (693)
.. ..++||+|||+|++++||+++|+||+||+||++|+||+|.|||++|. +||+|.+|+|++++++..| +.++||
T Consensus 489 ~~----~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~-~~p~V~ea~Vvg~~~~~~g-~~l~a~ 562 (652)
T 1pg4_A 489 FS----TFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV-AHPKIAEAAVVGIPHAIKG-QAIYAY 562 (652)
T ss_dssp HS----SSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHH-HSTTEEEEEEEEEEETTTE-EEEEEE
T ss_pred HH----CCCCEEECCCEEEECCCCCEEEEECCCCEEEECCEEECHHHHHHHHH-HCCCCCEEEEEEEECCCCC-EEEEEE
T ss_conf 42----49988888957998389968999657888987999988999999998-5988343899977857898-389999
Q ss_pred EEECCCCCCC---HHHHHHHHHHHHHHHCCCCCEECC
Q ss_conf 9963999999---689999999999842499832109
Q 005501 660 VVLKKGFTSQ---PDKLKMIFSKAIQSKLNPLFKVWC 693 (693)
Q Consensus 660 vv~~~~~~~~---~~~l~~~l~~~L~~~~~P~~~v~~ 693 (693)
|+++++...+ .++++++|+++|+.||+|..++++
T Consensus 563 Vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v 599 (652)
T 1pg4_A 563 VTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWT 599 (652)
T ss_dssp EEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEEC
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEC
T ss_conf 9989999987999999999999767987387399990
No 4
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=1.00 E-value=1 Score=617.28 Aligned_cols=532 Identities=18% Similarity=0.184 Sum_probs=422.4
Q ss_pred CHHHHHHHHHHCHHHHHHHHHHHCCCCEECCCEEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCEEEEEEC
Q ss_conf 88899999825999999999854552033066020138888899998698995406323016766678999947999943
Q 005501 120 SFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWRE 199 (693)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~~ 199 (693)
+.++.+..+++++..++..+++.+...+..+.....-... .+ ........+.. .++.. +++++||++|+++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~p~~~tl~-~~l~~--~a~~~pd~~Al~~~~ 84 (979)
T 3tsy_A 12 SGLVPRGSHMARMAPQEQAVSQVMEKQSNNNNSDVIFRSK--LP--DIYIPNHLSLH-DYIFQ--NISEFATKPCLINGP 84 (979)
T ss_dssp ---------------------------------CCCBCCS--SC--CCCCCTTSCHH-HHHTT--TGGGTTTSEEEEETT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECC--CC--CCCCCCCCCHH-HHHHH--HHHHCCCCEEEEECC
T ss_conf 6766573055542258787777654124589887156368--89--87899988799-99999--998689970999889
Q ss_pred CCCCCCCCEEECHHHHHHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 788888621540999999999999999860-6999999998499999999999999907689843899999999999984
Q 005501 200 DRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRV 278 (693)
Q Consensus 200 ~~~~~~~~~~lTy~eL~~~~~~lA~~L~~~-v~~gd~V~i~~~~s~~~iv~~lA~~~aG~~~vpl~~~~~~~~l~~~l~~ 278 (693)
.+ +++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|++|.++.+++.+++++
T Consensus 85 ~~------~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~ 158 (979)
T 3tsy_A 85 TG------HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKA 158 (979)
T ss_dssp TC------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHH
T ss_pred CC------CEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 99------687899999999999999997097986999999189899999999999729889862887899999999997
Q ss_pred CCEEEEEEECCEEECCCCCCCHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 19059996064210795245436673008983599818788888877777663788730169999999888766899992
Q 005501 279 SKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAV 358 (693)
Q Consensus 279 ~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (693)
++++++|++.... +....+.......++.++.. .......+...|.++...... ...........++++
T Consensus 159 ~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~ 227 (979)
T 3tsy_A 159 SNTKLIITEARYV------DKIKPLQNDDGVVIVCIDDN---ESVPIPEGCLRFTELTQSTTE--ASEVIDSVEISPDDV 227 (979)
T ss_dssp HTEEEEEECSTTT------TTSHHHHHTSCCEEEECCCC---TTSCCCTTEEEGGGTSSCCSG--GGGGSCCSCCCTTSE
T ss_pred CCCEEEEECHHHH------HHHHHHHHCCCCEEEEECCC---CCCCCCCCCCCHHHHHHCCCC--CCCCCCCCCCCCCCE
T ss_conf 2980999885889------99999752478469996785---455677665349998612333--355677677896665
Q ss_pred EEEEECCCCCCCCCEEEECCHHHHHHHHHHCH----HCCCCCCCEEEEECCCCCCCHH-HHHHHHHHCCCEEEEECCCCC
Q ss_conf 79991469989866589535068999987304----1378889899982786200225-887988870978999369999
Q 005501 359 VNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA----HIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALYQGSPL 433 (693)
Q Consensus 359 a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~G~~lvi~~~~~~ 433 (693)
+||+|||||||.||||+++|+++.+.+.+... .+.+.+++++++.+|++|++++ ..++.++..|+++++.+ ..+
T Consensus 228 a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~-~~~ 306 (979)
T 3tsy_A 228 VALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMP-KFE 306 (979)
T ss_dssp EECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECS-SCC
T ss_pred EEEEECCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEC-CCC
T ss_conf 9999478988897399966699999999998740534467999779997856999999999998875384899908-899
Q ss_pred HHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCEECCCCCCCCCCEE
Q ss_conf 02399999981991994026999999915968999976600799425999920189998607788531241344344402
Q 005501 434 ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAY 513 (693)
Q Consensus 434 ~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~ 513 (693)
+..+++.++++++|++.++|+++..+.+.......++++||.+++||+++++++.+++.+.+++++++|.||+||++..+
T Consensus 307 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~ 386 (979)
T 3tsy_A 307 INLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVL 386 (979)
T ss_dssp HHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEE
T ss_pred HHHHHHHHHHHCCEEEECHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECHHHHHHHH
T ss_conf 99999999985972997479999999857655578842028999967879999999999977998488544454532787
Q ss_pred CCCC----CCCCCCCCCCCCCCCCCEEEEEC-CCCCCCCCCCCCEEEEEE-----ECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2588----67877647557788995499987-999977999981026998-----2445798632246423232122254
Q 005501 514 IQGS----LLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMP 583 (693)
Q Consensus 514 ~~~~----~~~~~~~~~iG~p~~~~~~~i~d-~~g~~~p~g~~~iGel~v-----~~~y~~~~~~~~~~~~t~~~f~~~~ 583 (693)
+... .......+++|+|+++++++|+| ++++++|.|++ |||+| +.||++ +++.|++.|..+
T Consensus 387 ~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~--GEl~i~g~~v~~GY~~------~p~~t~~~f~~~- 457 (979)
T 3tsy_A 387 AMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQP--GEICIRGHQIMKGYLN------NPAATAETIDKD- 457 (979)
T ss_dssp EECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCC--EEEEEESTTSCSEETT------CHHHHHHHBCTT-
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCC--CEEEEECCCCCCCCCC------CHHHHHHHCCCC-
T ss_conf 7077878876666778767315776799984888888899986--2799978870341169------935606433689-
Q ss_pred CCCCCEEEEECCEEEEECCCCEEEEEECCCCCCCCCEEEEHHHHHHHHHCCCCCCCEEEEEEECCCCCCCEEEEEEEEEC
Q ss_conf 57884146536459994498299995438821249744303779999720496511028996538999951799999963
Q 005501 584 MYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLK 663 (693)
Q Consensus 584 ~~~g~~~y~TGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~ 663 (693)
+||+|||+|++++||+++|+||+||+||++|+||+|.|||++|. +||+|.+++|++++++..+ +.+++||+..
T Consensus 458 -----g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~-~~p~V~~~~Vv~~~~~~~g-~~~~a~vv~~ 530 (979)
T 3tsy_A 458 -----GWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLI-GHPDITDVAVVAMKEEAAG-EVPVAFVVKS 530 (979)
T ss_dssp -----SCEEEEEEEEECTTSCEEEEEESCC--------------------------------------------------
T ss_pred -----CCEECCCEEEECCCCEEEEECCCCCEEEECCEEECHHHHHHHHH-HCCCCCEEEEEEECCCCCC-CEEEEEEEEC
T ss_conf -----82876888998579659993588787999999997999999998-4998526999974266789-3799999977
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCEEC
Q ss_conf 99999968999999999984249983210
Q 005501 664 KGFTSQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 664 ~~~~~~~~~l~~~l~~~L~~~~~P~~~v~ 692 (693)
++...+.++++++++++|+.||+|..+++
T Consensus 531 ~~~~~~~~~l~~~l~~~l~~~~~p~~i~~ 559 (979)
T 3tsy_A 531 KDSELSEDDVKQFVSKQVVFYKRINKVFF 559 (979)
T ss_dssp -----------------------------
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 99988999999999975546668707999
No 5
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=1.00 E-value=1 Score=597.73 Aligned_cols=443 Identities=18% Similarity=0.157 Sum_probs=367.9
Q ss_pred CCCCCCCCEEEEEECCCCCCCCCEEECHHHHHHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHHHHHHCCEEEEC
Q ss_conf 678999947999943788888621540999999999999999860-6999999998499999999999999907689843
Q 005501 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (693)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTy~eL~~~~~~lA~~L~~~-v~~gd~V~i~~~~s~~~iv~~lA~~~aG~~~vpl 263 (693)
+|+++||++|+++.++ ++||+||+++++++|++|+++ +++||+|+++++|++++++++|||+++|++++|+
T Consensus 36 ~a~~~Pd~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~~vpl 107 (620)
T 4dg8_A 36 MAALHPHREAIRDRFG--------SVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHHYLYI 107 (620)
T ss_dssp HHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHHCCCCEEEECCCC--------CCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCEEEEE
T ss_conf 9985899849981998--------48199999999999999997097997989999489989999999999969999954
Q ss_pred CCCCCHHHHHHHHHHCCEEEEEEECCEEECCCCCCCHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCC
Q ss_conf 89999999999998419059996064210795245436673008983599818788888877777663788730169999
Q 005501 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (693)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (693)
|+.+|.+++.++++++++++++++.......... .. ..+... ..
T Consensus 108 d~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~------------~~------------------~~~~~~----~~-- 151 (620)
T 4dg8_A 108 DLKQPAAWNAELCRQVDCRLILDCSTTPTPANGL------------PC------------------VPVRHL----PA-- 151 (620)
T ss_dssp CTTSCHHHHHHHHHHHTEEEEEECCSSCCCCTTS------------CE------------------EEGGGC----CC--
T ss_pred CCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCC------------CE------------------EEECCC----CC--
T ss_conf 8638699999999838996999158654334677------------53------------------551357----76--
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEECCHHHHHHHHHHCHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCC
Q ss_conf 99988876689999279991469989866589535068999987304137888989998278620022588798887097
Q 005501 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (693)
Q Consensus 344 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~ 423 (693)
...........++++|||+|||||||.||||+++|+++.+.+.+ ...+++.+++++++++|++|+.+++++|.+|+.|+
T Consensus 152 ~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~ 230 (620)
T 4dg8_A 152 APASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGG 230 (620)
T ss_dssp CCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTC
T ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEECHHHHHHHHHH-HHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCC
T ss_conf 77655678899877099998977046672899801999999998-78508898888999896089999999999996688
Q ss_pred EEEEECC-CCCHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCEEC
Q ss_conf 8999369-999023999999819919940269999999159689999766007994259999201899986077885312
Q 005501 424 TLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (693)
Q Consensus 424 ~lvi~~~-~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~ 502 (693)
++++.+. ..++..+++.++++++|++.++|++++.+.+.. ...+++||.+++|||++++...+.+...+++++++|
T Consensus 231 ~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n 307 (620)
T 4dg8_A 231 CCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD---PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVN 307 (620)
T ss_dssp EEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC---GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEE
T ss_pred EEEECCCCCCCHHHHHHHHHHHCCCEEECCHHHHHHHHHCC---HHHCCCCCEEEEEECCCCHHHHHHHHHHCCCEEEEE
T ss_conf 99968634589999999999839919990599999998548---122788258999817699999999998689928995
Q ss_pred CCCCCCCCCEECCCCC---CCCCCCCCCCCCCCCCEEEEECCCCCC-CCCCCCCEEEEEE-----ECCCCCCCCCCCCCC
Q ss_conf 4134434440225886---787764755778899549998799997-7999981026998-----244579863224642
Q 005501 503 SCGGTELSSAYIQGSL---LQPQAFGAFSTATMTAGLVILDECGVP-YPDDQPCVGEVGL-----FPLYLGASDRLLNAD 573 (693)
Q Consensus 503 ~YG~TE~~~~~~~~~~---~~~~~~~~iG~p~~~~~~~i~d~~g~~-~p~g~~~iGel~v-----~~~y~~~~~~~~~~~ 573 (693)
.||+||+++.++.... .......++|+|++|++++|+|+++++ +|.|+ +|||+| +.||++ +++
T Consensus 308 ~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~--~GEl~i~G~~v~~GY~~------~p~ 379 (620)
T 4dg8_A 308 GYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDR--AGEIVAFGAGLAQGYRN------DAA 379 (620)
T ss_dssp EECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSC--CEEEEEEETTCCSEETT------CHH
T ss_pred EECHHHHHHHEEEEECCCCCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCC--CEEEEEECCCCCCCCCC------CHH
T ss_conf 2765142041278743565567898872215168189999865898799997--04999946652554589------824
Q ss_pred CCCCCCCCCCCCCCC--EEEEECCEEEEECCCCEEEEEECCCCCCCCCEEEEHHHHHHHHHCCCCCCCEEEEEEECCCCC
Q ss_conf 323212225457884--146536459994498299995438821249744303779999720496511028996538999
Q 005501 574 HEEVYFRGMPMYKGM--CLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGG 651 (693)
Q Consensus 574 ~t~~~f~~~~~~~g~--~~y~TGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~ 651 (693)
.|++.|..+|. .|. +||||||+|++++||+|+|+||+|||||++|+||+|.|||++|. +||+|.+|+|++.+++..
T Consensus 380 ~t~~~f~~~p~-~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~-~~p~V~~a~Vv~~~~~~~ 457 (620)
T 4dg8_A 380 RTRASFVELPY-RGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFR-RQPGILDCALLVRERNGV 457 (620)
T ss_dssp HHHHHEEEEEE-TTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHH-TSTTEEEEEEEEEEETTE
T ss_pred HHHHHHCCCCC-CCCCCEEEECCCEEEECCCCEEEEECCCCCEEEECCEECCHHHHHHHHH-HCCCCCEEEEEEEECCCC
T ss_conf 64322015998-9987518967987998799709997467897998989717799999998-499940899999837995
Q ss_pred CCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEECC
Q ss_conf 951799999963999999689999999999842499832109
Q 005501 652 GPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVWC 693 (693)
Q Consensus 652 g~~~l~a~vv~~~~~~~~~~~l~~~l~~~L~~~~~P~~~v~~ 693 (693)
..++++++... +.++++++++||.||+|..++.+
T Consensus 458 --~~lv~~~~~~~------~~~~~~l~~~Lp~y~~P~~~~~v 491 (620)
T 4dg8_A 458 --KQLLCAWTGKA------DASPQALLRQLPTWQRPHACVRV 491 (620)
T ss_dssp --EEEEEEEEECT------TCCCHHHHHHSCGGGSCSEEEEC
T ss_pred --EEEEEEEECCH------HHHHHHHHHHCHHHCCCCEEEEE
T ss_conf --59999996675------78999999869010299399997
No 6
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=1.00 E-value=1 Score=596.64 Aligned_cols=474 Identities=17% Similarity=0.149 Sum_probs=398.0
Q ss_pred CCCCCCCCEEEEEECCCCCCCCCEEECHHHHHHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHHHHHHCCEEEEC
Q ss_conf 678999947999943788888621540999999999999999860-6999999998499999999999999907689843
Q 005501 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (693)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTy~eL~~~~~~lA~~L~~~-v~~gd~V~i~~~~s~~~iv~~lA~~~aG~~~vpl 263 (693)
+++++||++|+++.+.....+..+++||+||.++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 28 ~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl 107 (549)
T 3g7s_A 28 AAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPI 107 (549)
T ss_dssp HHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHHCCCCEEEEECCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCEEECC
T ss_conf 99868995599967876566666364399999999999999997297998999998899789999999999849799736
Q ss_pred CCCCCHHHHHHHHHHCCEEEEEEECCEEECCCCCCCHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCC
Q ss_conf 89999999999998419059996064210795245436673008983599818788888877777663788730169999
Q 005501 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (693)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (693)
++.++.+++.+++++++++++|++.... ..............+++.. .....+.++.......
T Consensus 108 ~~~~~~~~l~~il~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~- 170 (549)
T 3g7s_A 108 NPMYKSFELEHILNDSEATTLVVHSMLY------ENFKPVLEKTGVERVFVVG----------GEVNSLSEVMDSGSED- 170 (549)
T ss_dssp CTTCCHHHHHHHHHHTTCSEEEEEGGGH------HHHHHHHTTSCCCEEEEET----------CSSSCHHHHHHHSCSC-
T ss_pred CCCCCHHHHHHHHHHCCCCEEEECHHHH------HHHHHHHHHCCCCEEEEEC----------CCCCCHHHHHHCCCCC-
T ss_conf 9889999999999862898999773787------8999998617972799958----------9876889997347533-
Q ss_pred CCCCCCCCCCC-CCCEEEEEECCCCCCCCCEEEECCHHHHHHHHHHCHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHCC
Q ss_conf 99988876689-99927999146998986658953506899998730413788898999827862002258879888709
Q 005501 344 RPNYYSPVYNP-VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 422 (693)
Q Consensus 344 ~~~~~~~~~~~-~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G 422 (693)
....... +++++||+|||||||.||||+++|+++.+.+.+....+++.++|++++.+|++|+.++..++.++..|
T Consensus 171 ----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G 246 (549)
T 3g7s_A 171 ----FENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGLVNLMVTVG 246 (549)
T ss_dssp ----CCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHHHTTHHHHC
T ss_pred ----CCCCCCCCCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHCC
T ss_conf ----4556689978879999798866788559985899999999999870999887799947679998899999998629
Q ss_pred CEEEEECCCCCHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCC--CCCCCCCCEEEEECCCCCCCHHHHHHHH----CC
Q ss_conf 78999369999023999999819919940269999999159689--9997660079942599992018999860----77
Q 005501 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE--GLDWTKIRSFASTGETSNVDDDLWLSSK----AW 496 (693)
Q Consensus 423 ~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~--~~~l~~lr~i~~~Ge~l~~~~~~~~~~~----~~ 496 (693)
+++++.+ ..++..+++.++++++|++.++|+++..+.+..... ..+++++|.+++||+++++++.+++.+. +.
T Consensus 247 ~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~ 325 (549)
T 3g7s_A 247 NEYVVMG-MFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCN 325 (549)
T ss_dssp CEEEEES-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSS
T ss_pred CEEEECC-CCCHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 5499737-899999999999857749981888999999605541244776112588867756999999999998775537
Q ss_pred --CCCEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEC-CCCCCCCCCCCCEEEEEE-----ECCCCCCCCC
Q ss_conf --88531241344344402258867877647557788995499987-999977999981026998-----2445798632
Q 005501 497 --YNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASDR 568 (693)
Q Consensus 497 --~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~g~~~p~g~~~iGel~v-----~~~y~~~~~~ 568 (693)
..+++|.||+||++..++..........+++|+|+++++++|+| ++++++|.|+. |||+| +.||++
T Consensus 326 ~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~--GEl~v~g~~v~~GY~~---- 399 (549)
T 3g7s_A 326 NPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGRELGVGES--GEIVIRGPNIFKGYWK---- 399 (549)
T ss_dssp CTTCEEEEEEECGGGSSEEEECCGGGGGGTTSCCEECTTCEEEEECSSSCCEECTTCC--EEEEEESTTSCSEETT----
T ss_pred CCCCCCCCEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCC--EEEEEECCCHHHHHCC----
T ss_conf 7653104568516233333268843467688746569997799983899868999995--1899978666656578----
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCEEEEECCCCEEEEEECCCCCCCCCEEEEHHHHHHHHHCCCCCCCEEEEEEECC
Q ss_conf 24642323212225457884146536459994498299995438821249744303779999720496511028996538
Q 005501 569 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSP 648 (693)
Q Consensus 569 ~~~~~~t~~~f~~~~~~~g~~~y~TGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~ 648 (693)
+++.|++.|..++ +|.+||+|||+|++++||+++|+||+||+||++|+||+|.|||++|. +||+|.+|+|+++++
T Consensus 400 --~~~~t~~~f~~~~--~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~~ 474 (549)
T 3g7s_A 400 --REKENQECWWYDE--KGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLM-KHEAVMDVAVIGKPD 474 (549)
T ss_dssp --CTTGGGTSEEECT--TCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHT-TSTTEEEEEEECCCC
T ss_pred --CHHHHHHHHHCCC--CCCCEECCCCEEEECCCCEEEEECCCCCEEEECCEEECHHHHHHHHH-HCCCEEEEEEEEEEC
T ss_conf --9556366641147--89825715868998389639995366426998999988999999998-499931688996375
Q ss_pred CCCCCEEEEEEEEECCC--CCCCHHHHHHHHHHHHHHHCCCCCEEC
Q ss_conf 99995179999996399--999968999999999984249983210
Q 005501 649 AGGGPEVLVIFVVLKKG--FTSQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 649 ~~~g~~~l~a~vv~~~~--~~~~~~~l~~~l~~~L~~~~~P~~~v~ 692 (693)
+..+ +.++|||+++++ ...+.++++++|+++|+.||+|..+++
T Consensus 475 ~~~g-~~~~a~vv~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~ 519 (549)
T 3g7s_A 475 EEAG-EVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVREVEF 519 (549)
T ss_dssp -------CEEEEEECSTTTTSCCHHHHHHHHHTTCC-----CCCCE
T ss_pred CCCC-CEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 6669-56899999788766767999999999986457615408999
No 7
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=1.00 E-value=1 Score=591.93 Aligned_cols=467 Identities=19% Similarity=0.230 Sum_probs=392.0
Q ss_pred CCCCCCCCEEEEEECCCCCCCCCEEECHHHHHHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHHHHHHCCEEEEC
Q ss_conf 678999947999943788888621540999999999999999860-6999999998499999999999999907689843
Q 005501 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (693)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTy~eL~~~~~~lA~~L~~~-v~~gd~V~i~~~~s~~~iv~~lA~~~aG~~~vpl 263 (693)
+++++|+++|+++...+ +++||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+
T Consensus 31 ~a~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl 104 (536)
T 3ni2_A 31 NLSNHSSKPCLINGANG------DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAA 104 (536)
T ss_dssp TGGGSTTSEEEEETTTC------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEC
T ss_pred HHHCCCCCEEEEECCCC------CEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCEEECC
T ss_conf 76538996499977999------788899999999999999998199998999998589689999999999829799635
Q ss_pred CCCCCHHHHHHHHHHCCEEEEEEECCEEECCCCCCCHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCC
Q ss_conf 89999999999998419059996064210795245436673008983599818788888877777663788730169999
Q 005501 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (693)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (693)
++.++.+++.+++++++++++|++.... .............++.++.. ..+...++++......
T Consensus 105 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-- 168 (536)
T 3ni2_A 105 NPFSTPAELAKHAKASRAKLLITQACYY------EKVKDFARESDVKVMCVDSA--------PDGCLHFSELTQADEN-- 168 (536)
T ss_dssp CTTCCHHHHHHHHHHHTEEEEEECGGGT------HHHHHHHHHHTCEEEESSCC--------CTTCEETHHHHTSCGG--
T ss_pred CCCCCHHHHHHHHHHCCCEEEEECHHHH------HHHHHHHHHCCCEEEEECCC--------CCCCCCHHHHHHCCCC--
T ss_conf 8778999999999963987999885789------99999986058619995678--------7776589998615655--
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEECCHHHHHHHHHHCH----HCCCCCCCEEEEECCCCCCCHH-HHHHHH
Q ss_conf 99988876689999279991469989866589535068999987304----1378889899982786200225-887988
Q 005501 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA----HIDLKVGDVYCWPTNLGWVMGP-VILFSS 418 (693)
Q Consensus 344 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~~~~~~~~~-~~~~~~ 418 (693)
..+.....++++++|+|||||||.||||+++|+++.+.+.+... .+.+.+++++++.+|++|.+++ ..++.+
T Consensus 169 ---~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~ 245 (536)
T 3ni2_A 169 ---EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCG 245 (536)
T ss_dssp ---GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHH
T ss_pred ---CCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHH
T ss_conf ---56657898057899985898556635877309999999999974126444678887799955728888779999999
Q ss_pred HHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCC
Q ss_conf 87097899936999902399999981991994026999999915968999976600799425999920189998607788
Q 005501 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN 498 (693)
Q Consensus 419 l~~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~ 498 (693)
+..|+++++.+ ..++..+++.++++++|++.++|+++..+.+.......++++||.+++|||++++++.+++.+.++++
T Consensus 246 l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~ 324 (536)
T 3ni2_A 246 LRVGAPILIMP-KFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQA 324 (536)
T ss_dssp HHHTCCEEECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHHHHHCTTS
T ss_pred HHCCCEEEECC-CCCHHHHHHHHHHHCCEEEECCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 96598799907-99999999999984974897048999999708000358874000999877779999999999977999
Q ss_pred CEECCCCCCCCCCEECCCCC----CCCCCCCCCCCCCCCCEEEEEC-CCCCCCCCCCCCEEEEEE-----ECCCCCCCCC
Q ss_conf 53124134434440225886----7877647557788995499987-999977999981026998-----2445798632
Q 005501 499 AIIESCGGTELSSAYIQGSL----LQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASDR 568 (693)
Q Consensus 499 ~i~~~YG~TE~~~~~~~~~~----~~~~~~~~iG~p~~~~~~~i~d-~~g~~~p~g~~~iGel~v-----~~~y~~~~~~ 568 (693)
+++|.||+||++...+.+.. ......+++|+|+++++++|+| ++++++|.|+. |||++ +.||++
T Consensus 325 ~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~GY~~---- 398 (536)
T 3ni2_A 325 RLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQP--GEICIRGDQIMKGYLN---- 398 (536)
T ss_dssp EEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCC--EEEEEESTTSCSEETT----
T ss_pred CCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCC--CEEEEECCCCCHHHCC----
T ss_conf 7321006541163432454668864458899756767983899993899967989996--2899968362135448----
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCEEEEECCCCEEEEEECCCCCCCCCEEEEHHHHHHHHHCCCCCCCEEEEEEECC
Q ss_conf 24642323212225457884146536459994498299995438821249744303779999720496511028996538
Q 005501 569 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSP 648 (693)
Q Consensus 569 ~~~~~~t~~~f~~~~~~~g~~~y~TGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~ 648 (693)
+++.|++.|.. ++||+|||+|++++||+++|+||+||+||++|+||+|.|||++|. +||+|.+|+|+++++
T Consensus 399 --~p~~t~~~~~~------~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~~ 469 (536)
T 3ni2_A 399 --DPEATSRTIDK------EGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLI-AHPEISDAAVVGLKD 469 (536)
T ss_dssp --CHHHHHHHBCT------TSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHH-TSTTEEEEEEEEEEE
T ss_pred --CHHHHHHHCCC------CCCEECCCEEEECCCCEEEEEECCCCEEEECCEEECHHHHHHHHH-HCCCCCEEEEEEEEC
T ss_conf --95677743367------985471657998189659998503034888999998899999997-398710478996225
Q ss_pred CCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEECC
Q ss_conf 999951799999963999999689999999999842499832109
Q 005501 649 AGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVWC 693 (693)
Q Consensus 649 ~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~L~~~~~P~~~v~~ 693 (693)
+..+ +.++|||+..++...+.++++++|+++|+.||.|..++++
T Consensus 470 ~~~g-~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v 513 (536)
T 3ni2_A 470 EDAG-EVPVAFVVKSEKSQATEDEIKQYISKQVIFYKRIKRVFFI 513 (536)
T ss_dssp TTTE-EEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGCCSEEEEC
T ss_pred CCCC-CEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEE
T ss_conf 7789-5158999966899899999999999755577246679997
No 8
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=1.00 E-value=1 Score=589.04 Aligned_cols=452 Identities=19% Similarity=0.216 Sum_probs=380.2
Q ss_pred CCCCCCCCEEEEEECCCCCCCCCEEECHHHHHHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHHHHHHCCEEEEC
Q ss_conf 678999947999943788888621540999999999999999860-6999999998499999999999999907689843
Q 005501 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (693)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTy~eL~~~~~~lA~~L~~~-v~~gd~V~i~~~~s~~~iv~~lA~~~aG~~~vpl 263 (693)
+++++||++|+++.++ ++||+||.++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 84 ~a~~~pd~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl 155 (570)
T 4gr5_A 84 QAARAPDAVALLHEAD--------ELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTML 155 (570)
T ss_dssp HHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHHCCCCEEEECCCC--------CEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCEEEEC
T ss_conf 9987899717987998--------59099999999999999997499999989999589999999999999979899974
Q ss_pred CCCCCHHHHHHHHHHCCEEEEEEECCEEECCCCCCCHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCC
Q ss_conf 89999999999998419059996064210795245436673008983599818788888877777663788730169999
Q 005501 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (693)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (693)
++.++.+++.++++++++++++++....... .....+.... .....
T Consensus 156 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-------------~~~~~~~~~~----------------~~~~~----- 201 (570)
T 4gr5_A 156 DPQFPVERLALSLEDTGAPLLVTSRPLSGRL-------------TGTTTLYVED----------------EAASD----- 201 (570)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECTTTTTSS-------------CSSEEEECCC--------------------------
T ss_pred CCCCHHHHHHHHHHHCCCCEEEECCHHHHCC-------------CCCCCEEEEC----------------CCCCC-----
T ss_conf 8788699999999845998999661022104-------------6775045403----------------23344-----
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEECCHHHHHHHHHHCHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCC
Q ss_conf 99988876689999279991469989866589535068999987304137888989998278620022588798887097
Q 005501 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (693)
Q Consensus 344 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~ 423 (693)
...........++++++|+|||||||.||||+++|+++.+...+ ...+++++++++++++|++|+.+.+.++.+++.|+
T Consensus 202 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~ 280 (570)
T 4gr5_A 202 APAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGA 280 (570)
T ss_dssp --CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTC
T ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEECHHHHHHHHH-HHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCC
T ss_conf 66555678899887389997886789985899841899999976-54228897778999468638889999999996698
Q ss_pred EEEEECC-CCCHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCEEC
Q ss_conf 8999369-999023999999819919940269999999159689999766007994259999201899986077885312
Q 005501 424 TLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (693)
Q Consensus 424 ~lvi~~~-~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~ 502 (693)
++++.+. ..++..+++.|+++++|++.++|+++..+.+... .++++||.+++|||++++...+.+.+.+++++++|
T Consensus 281 ~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~ 357 (570)
T 4gr5_A 281 RCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP---EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGN 357 (570)
T ss_dssp EEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG---GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEE
T ss_pred EEEECCCCCCCHHHHHHHHHHCCCCEEEECHHHHHHHHHHCH---HHCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 999768766899999999998399699801999999985144---32777419999026099999999997589968997
Q ss_pred CCCCCCCCCEECCCCC---CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEE-----ECCCCCCCCCCCCCCC
Q ss_conf 4134434440225886---7877647557788995499987999977999981026998-----2445798632246423
Q 005501 503 SCGGTELSSAYIQGSL---LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADH 574 (693)
Q Consensus 503 ~YG~TE~~~~~~~~~~---~~~~~~~~iG~p~~~~~~~i~d~~g~~~p~g~~~iGel~v-----~~~y~~~~~~~~~~~~ 574 (693)
.||+||+++..+.... .......++|+|+++++++|+|++++++|.|+ +|||+| +.||++ +++.
T Consensus 358 ~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~~~~~~~G~--~GEl~v~g~~v~~GY~~------~~~~ 429 (570)
T 4gr5_A 358 GYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGA--LGELYVAGAGLAHGYVS------RPAL 429 (570)
T ss_dssp EECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEECTTSCBCCTTC--EEEEEEEETTCCCEETT------CHHH
T ss_pred EECHHHHEEEEEEEEECCCCCCCCCCCCCEEECCCEEEEECCCCCCCCCCC--CEEEEEEECCCCHHCCC------CCHH
T ss_conf 466014361145654026666788564540018988999999989998998--37999955430502089------8425
Q ss_pred CCCCCCCCCC--CCCCEEEEECCEEEEECCCCEEEEEECCCCCCCCCEEEEHHHHHHHHHCCCCCCCEEEEEEECCCCCC
Q ss_conf 2321222545--78841465364599944982999954388212497443037799997204965110289965389999
Q 005501 575 EEVYFRGMPM--YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGG 652 (693)
Q Consensus 575 t~~~f~~~~~--~~g~~~y~TGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g 652 (693)
|++.|..+|+ .++.+||+|||+|++++||+|+|+||+||+||++|+||+|.|||++|. +||+|.+|+|++.+++.++
T Consensus 430 t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~~ 508 (570)
T 4gr5_A 430 TAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLV-GHPAVRQAAVLAQDSRLGD 508 (570)
T ss_dssp HHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC------------------------------------------
T ss_pred HHCCCCCCCCCCCCCCEEEECCCEEEECCCCEEEEECCCCCEEEECCEEECHHHHHHHHH-CCCCCCEEEEEEEECCCCC
T ss_conf 305062688889999779827985898799759997244897998829708899999996-1998555999986079997
Q ss_pred CEEEEEEEEECCC-CCCCHHHHHHHHHHHHHHHCCCCCEEC
Q ss_conf 5179999996399-999968999999999984249983210
Q 005501 653 PEVLVIFVVLKKG-FTSQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 653 ~~~l~a~vv~~~~-~~~~~~~l~~~l~~~L~~~~~P~~~v~ 692 (693)
+.++|||+..++ ...+.++++++|+++|+.||+|..+++
T Consensus 509 -~~~~a~vv~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~ 548 (570)
T 4gr5_A 509 -KQLVAYVVAERADAPPDAAELRRHVAEALPAYMVPVECVP 548 (570)
T ss_dssp -----------------------------------------
T ss_pred -EEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf -5999999945778885899999999855961149848998
No 9
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=1.00 E-value=1 Score=588.55 Aligned_cols=526 Identities=17% Similarity=0.157 Sum_probs=411.7
Q ss_pred HHHHCHHHHHHHHHHHCCCC-EECCCEEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf 98259999999998545520-33066020138888899998698995406323016766678999947999943788888
Q 005501 127 FTVEHPEAYWEIALKEISVV-FREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDES 205 (693)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~~~~~~~~ 205 (693)
..++++.+|+..+++.+... ....+.... ....|......|....++++++ +.+||++|+++.+.. +
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~n~~~~~l~~~a--~~~pd~~Al~~~~~~---g 82 (580)
T 3etc_A 15 GHIDDDDKHMTSLLSQFVSKTDFESYEDFQ-------ENFKILVPENFNFAYDVVDVYA--RDSPEKLAMIWCDDY---G 82 (580)
T ss_dssp -----------CCGGGGBSCSCCSSHHHHH-------HHCCBCCCSSCCHHHHTHHHHH--HHCTTCEEEEEEESS---S
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCHHHHH-------HCCCCCCCCCCHHHHHHHHHHH--HHCCCCEEEEEECCC---C
T ss_conf 786745789999999886312326999998-------5389998551129999999998--648998799998689---9
Q ss_pred CCEEECHHHHHHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHCCEEEE
Q ss_conf 621540999999999999999860-6999999998499999999999999907689843899999999999984190599
Q 005501 206 AVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGI 284 (693)
Q Consensus 206 ~~~~lTy~eL~~~~~~lA~~L~~~-v~~gd~V~i~~~~s~~~iv~~lA~~~aG~~~vpl~~~~~~~~l~~~l~~~~~~~i 284 (693)
..+++||+||.++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|+++.++.+++.+++++++++++
T Consensus 83 ~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i 162 (580)
T 3etc_A 83 NEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMI 162 (580)
T ss_dssp CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEE
T ss_pred CEEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCCEE
T ss_conf 77487699999999999999997598999999998389789999999998599899707865898999999983698789
Q ss_pred EEECCEEECCCCCCCHHHHHHCCC---CCEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 960642107952454366730089---83599818788888877777663788730169999999888766899992799
Q 005501 285 FTQDFILRGGRKFPLYSKVLGAAP---LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNI 361 (693)
Q Consensus 285 i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i 361 (693)
|++.... ............+ ...+.+... ...+..++.+........ ...........++++++|
T Consensus 163 i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~a~i 230 (580)
T 3etc_A 163 VCIAEDD----VPEQVDEAHAECGDIPLKKAKVGGD-------VLEGWIDFRKELEESSPI-FERPTGEVSTKNEDICLV 230 (580)
T ss_dssp EEESSTT----HHHHHHHHHHHHCSCCCEEEEESSS-------CCTTCEEHHHHHHHSCSC-CCCCCGGGSCCTTSEEEE
T ss_pred EEECCHH----HHHHHHHHHHHCCCCCEEEEEECCC-------CCCCCCCHHHHHHHCCCC-CCCCCCCCCCCCCCCEEE
T ss_conf 9715245----7888887763088754279996885-------665401489887437832-246755567787874899
Q ss_pred EECCCCCCCCCEEEECCHHHHHHHHHHCHHCCCCCCCEEEEECCCCCCCHHH-HHHHHHHCCCEEEEEC-CCCCHHHHHH
Q ss_conf 9146998986658953506899998730413788898999827862002258-8798887097899936-9999023999
Q 005501 362 LFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFLNGATLALYQ-GSPLERSFGK 439 (693)
Q Consensus 362 ~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~~~~~l~~G~~lvi~~-~~~~~~~~~~ 439 (693)
+|||||||.||||+++|+++...+.......++.+++++++.++++|+.+.+ .++.++..|+++++.+ ..+++..+++
T Consensus 231 ~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~ 310 (580)
T 3etc_A 231 YFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLE 310 (580)
T ss_dssp EEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHH
T ss_pred EEECCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHH
T ss_conf 99379878755799616999999999898647898856999287489999999999998488489996677789999999
Q ss_pred HHHHCCCCEEEECHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCEECCCCCCCCCCEECCCCCC
Q ss_conf 99981991994026999999915968999976600799425999920189998607788531241344344402258867
Q 005501 440 FVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL 519 (693)
Q Consensus 440 ~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~ 519 (693)
.|+++++|.+.++|++++.|.+.. ....++++||.+++|||++++++.+++.+.+ +++++|.||+||++..++.. +.
T Consensus 311 ~i~~~~vt~~~~~P~~~~~l~~~~-~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~-~~ 387 (580)
T 3etc_A 311 KASKYGVTTFCAPPTIYRFLIKED-LSHYNFSTLKYAVVAGEPLNPEVFNRFLEFT-GIKLMEGFGQTETVVTIATF-PW 387 (580)
T ss_dssp HHHHHTCCEEEECHHHHHHHHTSC-C---CCTTCCEEEECSSCCCHHHHHHHHHHH-SCCCEEEECCTTSSCCEECC-TT
T ss_pred HHHHHCCEEEECCHHHHHHHHHCC-CCCCCCCCCEEEEECCCCCCHHHHHHHHHHH-CCEEECCCCCCCCCCEEECC-CC
T ss_conf 999979919986499999998440-1248975546999916889999999999973-99286363615025100558-88
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEE------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 8776475577889954999879999779999810269982------4457986322464232321222545788414653
Q 005501 520 QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF------PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRH 593 (693)
Q Consensus 520 ~~~~~~~iG~p~~~~~~~i~d~~g~~~p~g~~~iGel~v~------~~y~~~~~~~~~~~~t~~~f~~~~~~~g~~~y~T 593 (693)
.....+++|+|++|++++|+|++++++|.|+. |||++. ++.+. .++.+++.|++.|. ++||+|
T Consensus 388 ~~~~~~~~G~p~~~~~v~ivd~~g~~~~~g~~--GEl~v~~~~g~~~~~~~--gY~~~p~~t~~~f~-------~gwy~T 456 (580)
T 3etc_A 388 MEPKPGSIGKPTPGYKIELMDRDGRLCEVGEE--GEIVINTMEGKPVGLFV--HYGKDPERTEETWH-------DGYYHT 456 (580)
T ss_dssp SCCCTTCCBEECTTCEEEEECTTSCBCCTTCC--EEEEEECTTCCCTTCCC--EETTCHHHHHHHEE-------TTEEEE
T ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCC--EEEEEECCCCCCCEEEC--CCCCCHHHHHHHCC-------CCEEEC
T ss_conf 78998865357899889998899899989986--28999647999873224--11579767775047-------988963
Q ss_pred CCEEEEECCCCEEEEEECCCCCCCCCEEEEHHHHHHHHHCCCCCCCEEEEEEECCCCCCCEEEEEEEEECCCCCCC---H
Q ss_conf 6459994498299995438821249744303779999720496511028996538999951799999963999999---6
Q 005501 594 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQ---P 670 (693)
Q Consensus 594 GDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~---~ 670 (693)
||+|++++||+++|+||+||+||++|+||+|.|||++|. +||+|.+|+|++++++..| +.++|+|++.++...+ .
T Consensus 457 GDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~-~~p~V~~a~Vvg~~~~~~g-~~~~a~vv~~~~~~~~~~~~ 534 (580)
T 3etc_A 457 GDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALI-QHPAVLECAITGVPDPVRG-QVIKATIVLTKDYTPSDSLK 534 (580)
T ss_dssp EEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EEEEEEEEECTTCCCCHHHH
T ss_pred CCEEEECCCCCEEEEECCCCEEEECCEEECHHHHHHHHH-HCCCEEEEEEEEEECCCCC-CEEEEEEEECCCCCCCHHHH
T ss_conf 748999799709998268998987999998999999997-5988416999962356778-37799999889999888999
Q ss_pred HHHHHHHHHHHHHHCCCCCEEC
Q ss_conf 8999999999984249983210
Q 005501 671 DKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 671 ~~l~~~l~~~L~~~~~P~~~v~ 692 (693)
++++++++++|+.||.|..+++
T Consensus 535 ~~l~~~l~~~l~~~~~P~~i~~ 556 (580)
T 3etc_A 535 NELQDHVKNVTAPYKYPRIIEF 556 (580)
T ss_dssp HHHHHHHHHHSCGGGCCSEEEE
T ss_pred HHHHHHHHHHCCCCCCCEEEEE
T ss_conf 9999999865887658748999
No 10
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=1.00 E-value=1 Score=581.64 Aligned_cols=465 Identities=18% Similarity=0.189 Sum_probs=380.5
Q ss_pred CCCCCCCCEEEEEECCCCCCCCCEEECHHHHHHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHHHHHHCCEEEEC
Q ss_conf 678999947999943788888621540999999999999999860-6999999998499999999999999907689843
Q 005501 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (693)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTy~eL~~~~~~lA~~L~~~-v~~gd~V~i~~~~s~~~iv~~lA~~~aG~~~vpl 263 (693)
+++++||++|+++.+. ++||+||+++++++|++|+++ +++||+|+++++|++++++++|||+++|++++|+
T Consensus 34 ~a~~~p~~~A~~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl 105 (539)
T 1mdb_A 34 RAAKYGDRIAITCGNT--------HWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFA 105 (539)
T ss_dssp HHHHHTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEEC
T ss_pred HHHHCCCCEEEEECCC--------CCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHCCEEEECC
T ss_conf 9997799779996897--------43699999999999999997598999999999278689999999999749599427
Q ss_pred CCCCCHHHHHHHHHHCCEEEEEEECCEEECCCCCCCHHHHHHCCCC-CEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCC
Q ss_conf 8999999999999841905999606421079524543667300898-359981878888887777766378873016999
Q 005501 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (693)
Q Consensus 264 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (693)
++.++.+++.+++++++++++|+++.... .........+....+. ..+++.... ..|.++......
T Consensus 106 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~- 172 (539)
T 1mdb_A 106 LPSHRSSEITYFCEFAEAAAYIIPDAYSG-FDYRSLARQVQSKLPTLKNIIVAGEA-----------EEFLPLEDLHTE- 172 (539)
T ss_dssp CTTCCHHHHHHHHHHTTCSEEEEESEETT-EEHHHHHHHHHHHCTTCCCEEEESCC-----------TTSEEGGGCCCC-
T ss_pred CCCCCHHHHHHHHHHCCCCEEEECCCCCC-CCHHHHHHHHHHCCCCCCEEEECCCC-----------CCHHHHHHCCCC-
T ss_conf 98789899999998579979996542366-53799999987348986279974886-----------122335543566-
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEECCHHHHHHHHHHCHHCCCCCCCEEEEECCCCCCCHHH--HHHHHHH
Q ss_conf 99998887668999927999146998986658953506899998730413788898999827862002258--8798887
Q 005501 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV--ILFSSFL 420 (693)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~--~~~~~l~ 420 (693)
........++++++|+|||||||.||||+++|+++.+.+.+....+++++++++++.+|++|++++. .++.+|+
T Consensus 173 ----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~ 248 (539)
T 1mdb_A 173 ----PVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLY 248 (539)
T ss_dssp ----CCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHH
T ss_pred ----CCCCCCCCCCCEEEEEECCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf ----6556788967618999688757898689973599999999998852879777799963552422155788999997
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCE
Q ss_conf 09789993699990239999998199199402699999991596899997660079942599992018999860778853
Q 005501 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (693)
Q Consensus 421 ~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i 500 (693)
.|+++++.+ ..++..+++.++++++|++.++|+++..+++.......++++||.+++|||++++++.+++.+.+ ++++
T Consensus 249 ~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~ 326 (539)
T 1mdb_A 249 AGGRVVLSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTL 326 (539)
T ss_dssp TTCEEEECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEE
T ss_pred HCCEEEECC-CCCHHHHHHHHHHCCCEEEECCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHH-CCCE
T ss_conf 188999789-99999999999981986998568999999847044678863100899858879999999999973-9957
Q ss_pred ECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCC-EEEEECCCCCCCCCCCCCEEEEEE-----ECCCCCCCCCCCCCCC
Q ss_conf 1241344344402258867877647557788995-499987999977999981026998-----2445798632246423
Q 005501 501 IESCGGTELSSAYIQGSLLQPQAFGAFSTATMTA-GLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADH 574 (693)
Q Consensus 501 ~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~-~~~i~d~~g~~~p~g~~~iGel~v-----~~~y~~~~~~~~~~~~ 574 (693)
+|.||+||++..++..........+++|+|+++. +++|+|++++++|.|+ +|||++ +.||++ +++.
T Consensus 327 ~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~--~GEl~v~g~~v~~GY~~------~~~~ 398 (539)
T 1mdb_A 327 QQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGE--TGHLLTRGPYTIRGYYK------AEEH 398 (539)
T ss_dssp EEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTC--CEEEEEECTTSCSSCTT------CHHH
T ss_pred EEEECCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCC--CCEEEEECCCCCHHHCC------CHHH
T ss_conf 999768988652147998087527877765599754799999979996899--64698627321431268------9366
Q ss_pred CCCCCCCCCCCCCCEEEEECCEEEEECCCCEEEEEECCCCCCCCCEEEEHHHHHHHHHCCCCCCCEEEEEEECCCCCCCE
Q ss_conf 23212225457884146536459994498299995438821249744303779999720496511028996538999951
Q 005501 575 EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPE 654 (693)
Q Consensus 575 t~~~f~~~~~~~g~~~y~TGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~ 654 (693)
|++.|..+ +||+|||+|++++||+++|+||+||+||++|+||+|.|||++|. +||+|.+|+|++++++..| +
T Consensus 399 t~~~f~~~------g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~g-~ 470 (539)
T 1mdb_A 399 NAASFTED------GFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLL-AHPAVHDAAMVSMPDQFLG-E 470 (539)
T ss_dssp HHHHBCTT------SCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE-E
T ss_pred HHHHCCCC------CCEECCCEEEECCCCCEEEECCCCCEEEECCEEECHHHHHHHHH-HCCCCCEEEEEECCCCCCC-C
T ss_conf 24443479------97064725999799768995145455887999988999999998-6988225999953263468-3
Q ss_pred EEEEEEEECCCCCCCHHHHHHHHHHH-HHHHCCCCCEECC
Q ss_conf 79999996399999968999999999-9842499832109
Q 005501 655 VLVIFVVLKKGFTSQPDKLKMIFSKA-IQSKLNPLFKVWC 693 (693)
Q Consensus 655 ~l~a~vv~~~~~~~~~~~l~~~l~~~-L~~~~~P~~~v~~ 693 (693)
.++|||++++ ...+.++++++++++ |+.||+|..++++
T Consensus 471 ~~~a~vv~~~-~~~~~~~l~~~l~~~~L~~~~~P~~i~~v 509 (539)
T 1mdb_A 471 RSCVFIIPRD-EAPKAAELKAFLRERGLAAYKIPDRVEFV 509 (539)
T ss_dssp EEEEEEEESS-SCCCHHHHHHHHHHTTCCGGGSCSEEEEC
T ss_pred EEEEEEEECC-CCCCHHHHHHHHHHCCCCCCCCCCEEEEE
T ss_conf 5799999799-99999999999974899756688889994
Done!