Query 005501
Match_columns 693
No_of_seqs 347 out of 3395
Neff 9.6
Searched_HMMs 13730
Date Tue Mar 26 18:17:41 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005501.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_2009-2012//hhsearch_scop/005501hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pg4a_ e.23.1.1 (A:) Acetyl-C 100.0 0 0 660.4 54.4 557 117-693 16-595 (643)
2 d1ry2a_ e.23.1.1 (A:) Acetyl-C 100.0 0 0 628.6 54.0 557 119-693 1-592 (640)
3 d1v25a_ e.23.1.1 (A:) Long cha 100.0 0 0 530.7 39.2 485 166-692 4-506 (534)
4 d1lcia_ e.23.1.1 (A:) Lucifera 100.0 0 0 524.0 44.9 471 188-692 32-515 (541)
5 d1amua_ e.23.1.1 (A:) Phenylal 100.0 0 0 506.4 44.3 456 177-693 26-491 (514)
6 d1mdba_ e.23.1.1 (A:) Dihydrox 100.0 0 0 497.4 39.0 472 177-693 28-509 (536)
7 d3cw9a1 e.23.1.1 (A:1-503) 4-c 100.0 0 0 467.7 43.2 471 177-693 5-482 (503)
8 d1l5aa2 c.43.1.2 (A:175-424) V 98.5 2.4E-10 1.7E-14 76.0 -8.1 131 13-154 104-241 (250)
9 d1lcia_ e.23.1.1 (A:) Lucifera 95.3 0.06 4.4E-06 26.6 8.9 100 187-288 183-286 (541)
10 d2ayia1 e.60.1.1 (A:3-408) Ami 47.1 5.7 0.00042 14.9 7.1 50 215-264 2-56 (406)
11 d2cvba1 c.47.1.10 (A:2-188) Pr 33.5 9.4 0.00069 13.7 3.9 42 590-632 113-154 (187)
12 d1zjca1 e.60.1.1 (A:3-415) Ami 28.5 12 0.00084 13.2 6.4 52 215-266 2-58 (413)
No 1
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}
Probab=100.00 E-value=0 Score=660.43 Aligned_cols=557 Identities=25% Similarity=0.366 Sum_probs=452.7
Q ss_pred CCCCHHHHHHHHHHCHHHHHHHHHHHCCCCEECCCEEECCCCCC-CCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCEEE
Q ss_conf 98788899999825999999999854552033066020138888-89999869899540632301676667899994799
Q 005501 117 PITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDK-SKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAI 195 (693)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~a~~~pd~~Al 195 (693)
.+.+|+.++++|++++..||..+++. ..|.+++..+++.... .....+||+++.+|++++++++|. +.+||++|+
T Consensus 16 ~~~~y~~l~~~s~~~~~~fW~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~N~~~n~ldrh~--~~~~d~~Al 91 (643)
T d1pg4a_ 16 NPEQYETKYKQSINDPDTFWGEQGKI--LDWITPYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHL--QENGDRTAI 91 (643)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHHGGG--SCCSBCCSCCEEEECCTTCCEEEESTTCEECHHHHHTGGGH--HHHTTSEEE
T ss_pred CHHHHHHHHHHHHHCHHHHHHHHHHH--EEEECCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHH--HHCCCCEEE
T ss_conf 99999999999971999999999865--05877982015676699987773698971319999999999--749998799
Q ss_pred EEECCCCCCCCCEEECHHHHHHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHHHHHHCCEEEECCCCCCHHHHHH
Q ss_conf 9943788888621540999999999999999860-699999999849999999999999990768984389999999999
Q 005501 196 VWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIAT 274 (693)
Q Consensus 196 ~~~~~~~~~~~~~~lTy~eL~~~~~~lA~~L~~~-v~~gd~V~i~~~~s~~~iv~~lA~~~aG~~~vpl~~~~~~~~l~~ 274 (693)
++.+. +++..+++||+||.++++++|++|+++ +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+
T Consensus 92 i~~~~--~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA~~~~Gav~v~l~~~~~~~~l~~ 169 (643)
T d1pg4a_ 92 IWEGD--DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAG 169 (643)
T ss_dssp EEECS--STTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHH
T ss_pred EEEEC--CCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCEEEEECCCCCCHHHHHH
T ss_conf 99736--9998569709999999999999999729899999999515444899999999985959993188899999999
Q ss_pred HHHHCCEEEEEEECCEEECCCCCCCHHHHHHCC-------CCCEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCC
Q ss_conf 998419059996064210795245436673008-------9835998187888888777776637887301699999998
Q 005501 275 RLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA-------PLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNY 347 (693)
Q Consensus 275 ~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (693)
++++++++++|+++......+............ ...++++.......... ......+.+....... .
T Consensus 170 ~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~ 243 (643)
T d1pg4a_ 170 CIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQ-EGRDLWWRDLIEKASP-----E 243 (643)
T ss_dssp HHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCC-BTTEEEHHHHHTTSCS-----C
T ss_pred HHHHCCCCEEEECCHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCC-CCCCHHHHHHHCCCCC-----C
T ss_conf 998559989998431443133321034478887244556640799964677655644-4420133443202575-----4
Q ss_pred CCCCCCCCCCEEEEEECCCCCCCCCEEEECCHHHHHH-HHHHCHHCCCCCCCEEEEECCCCCCCHH-HHHHHHHHCCCEE
Q ss_conf 8876689999279991469989866589535068999-9873041378889899982786200225-8879888709789
Q 005501 348 YSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRC-TAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATL 425 (693)
Q Consensus 348 ~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~-~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~G~~l 425 (693)
..+....++++++|+|||||||.||||+++|++++.. .......++++++|++++.+|++|++++ +.++.+|+.|+++
T Consensus 244 ~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~l~~~L~~G~t~ 323 (643)
T d1pg4a_ 244 HQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATT 323 (643)
T ss_dssp CCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEE
T ss_pred CCCCCCCCCCEEEEEECCCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCEE
T ss_conf 57777998883999908875667877998327999999999999619898878999277699888899999999858899
Q ss_pred EEECCC---CCHHHHHHHHHHCCCCEEEECHHHHHHHHHCCC--CCCCCCCCCCEEEEECCCCCCCHHHHHHHHCC--CC
Q ss_conf 993699---990239999998199199402699999991596--89999766007994259999201899986077--88
Q 005501 426 ALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW--YN 498 (693)
Q Consensus 426 vi~~~~---~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~--~~ 498 (693)
+++++. +++..+++.|+++++|++.++|++++.|++... ....++++||.++++|+++++++.+++.+.++ ++
T Consensus 324 vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~dl~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~ 403 (643)
T d1pg4a_ 324 LMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKC 403 (643)
T ss_dssp EEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCS
T ss_pred EEECCCCCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHCCCHHCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCC
T ss_conf 99568888799999999999979939980599999998575100245688763799998678999999999998588886
Q ss_pred CEECCCCCCCCCCEECCCCC-CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCC-CCCC
Q ss_conf 53124134434440225886-787764755778899549998799997799998102699824457986322464-2323
Q 005501 499 AIIESCGGTELSSAYIQGSL-LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNA-DHEE 576 (693)
Q Consensus 499 ~i~~~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~~~~~~i~d~~g~~~p~g~~~iGel~v~~~y~~~~~~~~~~-~~t~ 576 (693)
++++.||+||+++.++...+ ..+...+++|+|++|++++|+|++|++++.|+ .|||++...+.+...+|++. +.+.
T Consensus 404 ~i~~~yG~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd~~g~~~~~g~--~Gel~v~~~~p~~~~~~~~~~~~~~ 481 (643)
T d1pg4a_ 404 PVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGAT--EGNLVITDSWPGQARTLFGDHERFE 481 (643)
T ss_dssp CEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSE--EEEEEECSCCTTCCCEETTCHHHHH
T ss_pred EEEEEECHHHCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC--EEEEEEECCCCCCCCCCCCCHHHCH
T ss_conf 39972632120665782488766777776630447978999989998988996--5799995688865550057822343
Q ss_pred CCCCCCCCCCCCEEEEECCEEEEECCCCEEEEEECCCCCCCCCEEEEHHHHHHHHHCCCCCCCEEEEEEECCCCCCCEEE
Q ss_conf 21222545788414653645999449829999543882124974430377999972049651102899653899995179
Q 005501 577 VYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVL 656 (693)
Q Consensus 577 ~~f~~~~~~~g~~~y~TGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l 656 (693)
+.|. ...++||+|||+|++++||+|+|+||+||+||++|+||+|.|||++|. +||+|.+|+|++++++..| +.+
T Consensus 482 ~~~~----~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~ik~~G~ri~p~eIE~~l~-~~p~V~eaaVvg~~d~~~g-e~~ 555 (643)
T d1pg4a_ 482 QTYF----STFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV-AHPKIAEAAVVGIPHAIKG-QAI 555 (643)
T ss_dssp HHHH----SSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHH-HSTTEEEEEEEEEEETTTE-EEE
T ss_pred HHHC----CCCCCEEECCCEEEECCCCEEEEECCCCCEEEECCEEECHHHHHHHHH-HCCCCCEEEEEEEECCCCC-EEE
T ss_conf 2120----268985874878999899209995266418998999998899999998-4998256999988879998-599
Q ss_pred EEEEEECCCCCCCH---HHHHHHHHHHHHHHCCCCCEECC
Q ss_conf 99999639999996---89999999999842499832109
Q 005501 657 VIFVVLKKGFTSQP---DKLKMIFSKAIQSKLNPLFKVWC 693 (693)
Q Consensus 657 ~a~vv~~~~~~~~~---~~l~~~l~~~L~~~~~P~~~v~~ 693 (693)
+|||+++++...+. .+++++|+++|+.|++|..++++
T Consensus 556 ~a~Vv~~~~~~~~~~~~~~i~~~~~~~L~~~~vP~~i~~v 595 (643)
T d1pg4a_ 556 YAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWT 595 (643)
T ss_dssp EEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEEC
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEE
T ss_conf 9999978999999889999999998538866686489997
No 2
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00 E-value=0 Score=628.59 Aligned_cols=557 Identities=22% Similarity=0.310 Sum_probs=438.9
Q ss_pred CCHHHHHHHHHHCHHHHHHHHHHHCCCCEECCCEEECCCCCC----CCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCEE
Q ss_conf 788899999825999999999854552033066020138888----8999986989954063230167666789999479
Q 005501 119 TSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDK----SKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVA 194 (693)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~a~~~pd~~A 194 (693)
.+|+.+++++++++.+||.+.+..+ +.|.+++++++..... ..+..+||+++.+|++++++++|+ +++||++|
T Consensus 1 ~~y~~l~~~Si~~~~~Fw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~lN~~~n~ldr~a--~~~pd~~A 77 (640)
T d1ry2a_ 1 QDYQRLHKESIEDPAKFFGSKATQF-LNWSKPFDKVFIPDPKTGRPSFQNNAWFLNGQLNACYNCVDRHA--LKTPNKKA 77 (640)
T ss_dssp CHHHHHHHHHHHCHHHHHHHHHHHH-CCEEECCSCSBCBCSSSCSBCSTTCCBSTTCEECHHHHHTHHHH--TTCTTSEE
T ss_pred CCHHHHHHHHHHCHHHHHHHHHHHH-EEEECCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH--HHCCCCEE
T ss_conf 9889999999729999999999863-06716872753467766787787785889974539999999999--62989879
Q ss_pred EEEECCCCCCCCCEEECHHHHHHHHHHHHHHHH-HH-CCCCCEEEEECCCCHHHHHHHHHHHHHCCEEEECCCCCCHHHH
Q ss_conf 999437888886215409999999999999998-60-6999999998499999999999999907689843899999999
Q 005501 195 IVWREDRCDESAVNLMTYKELREQVMLVANALD-TM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREI 272 (693)
Q Consensus 195 l~~~~~~~~~~~~~~lTy~eL~~~~~~lA~~L~-~~-v~~gd~V~i~~~~s~~~iv~~lA~~~aG~~~vpl~~~~~~~~l 272 (693)
+++.+. +++..+++||+||.++++++|++|+ ++ +++||+|+|+++|++++++++|||+++|++++|+++.++.+++
T Consensus 78 li~~~~--~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpi~~~~~~~~l 155 (640)
T d1ry2a_ 78 IIFEGD--EPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSL 155 (640)
T ss_dssp EEEECS--STTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHH
T ss_pred EEEEEC--CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHCCCCEEEECCCCCCCHHHH
T ss_conf 999835--899726874999999999999998983398998999999489899999998750186286067788999999
Q ss_pred HHHHHHCCEEEEEEECCEEECCCCCCCHHHHHHCCC---C--CEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCC
Q ss_conf 999984190599960642107952454366730089---8--35998187888888777776637887301699999998
Q 005501 273 ATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP---L--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNY 347 (693)
Q Consensus 273 ~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (693)
.++++++++++++++.......+.......+.+... . ......................+........ ..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 230 (640)
T d1ry2a_ 156 RDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYK-----TY 230 (640)
T ss_dssp HHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEEEHHHHHTTSC-----SC
T ss_pred HHHHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC-----CC
T ss_conf 9999755123321210011002014567777766543024210000013554333334542110000133443-----22
Q ss_pred CCCCCCCCCCEEEEEECCCCCCCCCEEEECCHHHHHHHHH-HCHHCCCCCCCEEEEECCCCCCCHH-HHHHHHHHCCCEE
Q ss_conf 8876689999279991469989866589535068999987-3041378889899982786200225-8879888709789
Q 005501 348 YSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE-GWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATL 425 (693)
Q Consensus 348 ~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~-~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~G~~l 425 (693)
....+..++++++|+|||||||.||||+++|++++..... ....++++++|++++.+|++|+++. +.++.+|+.|+++
T Consensus 231 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~~ 310 (640)
T d1ry2a_ 231 YPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCAT 310 (640)
T ss_dssp CCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEE
T ss_pred CCCCCCCCCCCCEEEECCCCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCEE
T ss_conf 23577654557789979988899961234565477888888876328983430000156033546899999999719889
Q ss_pred EEECCC---CCHHHHHHHHHHCCCCEEEECHHHHHHHHHCCC--CCCCCCCCCCEEEEECCCCCCCHHHHHHHHCC--CC
Q ss_conf 993699---990239999998199199402699999991596--89999766007994259999201899986077--88
Q 005501 426 ALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW--YN 498 (693)
Q Consensus 426 vi~~~~---~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~--~~ 498 (693)
++.++. +++..+++.|+++++|.+.++|++++.|.+... ....++++||.++++|+++++++.+++.+.++ ..
T Consensus 311 v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~ 390 (640)
T d1ry2a_ 311 LVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEI 390 (640)
T ss_dssp EEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSS
T ss_pred EEECCCCCCCCHHHHHHHHHHHCCCEEECCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 99558877799999999999708628971728999998564111233788735899994345768999999986088764
Q ss_pred CEECCCCCCCCCCEECCCCC--CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEE---CCCCCCCCCCCCCC
Q ss_conf 53124134434440225886--78776475577889954999879999779999810269982---44579863224642
Q 005501 499 AIIESCGGTELSSAYIQGSL--LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF---PLYLGASDRLLNAD 573 (693)
Q Consensus 499 ~i~~~YG~TE~~~~~~~~~~--~~~~~~~~iG~p~~~~~~~i~d~~g~~~p~g~~~iGel~v~---~~y~~~~~~~~~~~ 573 (693)
.+++.||+||++........ ..+...+++|+|++|++++|+|+++.....+..+.||+++. ++++.+ ++.+++
T Consensus 391 ~i~~~yg~te~~~~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel~i~~~~p~~~~g--y~~~~e 468 (640)
T d1ry2a_ 391 PIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFART--IWKNHD 468 (640)
T ss_dssp CEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCE--ETTCHH
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCC--CCCCHH
T ss_conf 178520022245422235677767777764432557865899837998525787724899997057875466--146977
Q ss_pred CCCCCCCCCCCCCCCEEEEECCEEEEECCCCEEEEEECCCCCCCCCEEEEHHHHHHHHHCCCCCCCEEEEEEECCCCCCC
Q ss_conf 32321222545788414653645999449829999543882124974430377999972049651102899653899995
Q 005501 574 HEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 653 (693)
Q Consensus 574 ~t~~~f~~~~~~~g~~~y~TGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~ 653 (693)
.+.+.|.. +..+||+|||+|++++||+|+|+||+||+||++|+||+|.|||++|. +||+|.+|+|++++++..|
T Consensus 469 ~t~~~~~~----~~~gw~~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~~I~p~eIE~~l~-~~p~V~~a~Vvg~~d~~~g- 542 (640)
T d1ry2a_ 469 RYLDTYLN----PYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAII-EDPIVAECAVVGFNDDLTG- 542 (640)
T ss_dssp HHHHHHTS----SSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHH-SSTTEEEEEEECCCCCTTS-
T ss_pred HHHHHHCC----CCCCEEECCCCEEECCCCCEEEEECCCCEEEECCEEECHHHHHHHHH-HCCCCCEEEEEEEECCCCC-
T ss_conf 87864136----89976774982049999878998747788999999998899999998-4998327999988879898-
Q ss_pred EEEEEEEEECCCCCCC----------HHHHHHHHHHHHHHHCCCCCEECC
Q ss_conf 1799999963999999----------689999999999842499832109
Q 005501 654 EVLVIFVVLKKGFTSQ----------PDKLKMIFSKAIQSKLNPLFKVWC 693 (693)
Q Consensus 654 ~~l~a~vv~~~~~~~~----------~~~l~~~l~~~L~~~~~P~~~v~~ 693 (693)
+.++|||+++++...+ .++++++++++|+.|++|..++++
T Consensus 543 e~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~~~~~L~~~~~P~~i~~v 592 (640)
T d1ry2a_ 543 QAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILV 592 (640)
T ss_dssp CCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEEC
T ss_pred EEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 48999999737887663315789999999999998548887786099996
No 3
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=0 Score=530.68 Aligned_cols=485 Identities=20% Similarity=0.186 Sum_probs=385.2
Q ss_pred CCCCCCCCCHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCEEECHHHHHHHHHHHHHHHHHH-CCCCCEEEEECCCCH
Q ss_conf 8698995406323016766678999947999943788888621540999999999999999860-699999999849999
Q 005501 166 TWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTV 244 (693)
Q Consensus 166 ~~~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTy~eL~~~~~~lA~~L~~~-v~~gd~V~i~~~~s~ 244 (693)
.|.....+|..+ ++++++ +++||++|+++... +.++++||+||.++++++|++|.+. +++||+|+++++|++
T Consensus 4 ~~~~~~~~~l~~-~l~~~a--~~~pd~~av~~~~~----g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~ 76 (534)
T d1v25a_ 4 STMMDEELNLWD-FLERAA--ALFGRKEVVSRLHT----GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHF 76 (534)
T ss_dssp CCBCCCCCCTHH-HHHHHH--HHSTTCEEEEECTT----SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSH
T ss_pred CCCCCCCCCHHH-HHHHHH--HHCCCCEEEEEECC----CCEEEECHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCH
T ss_conf 864789988999-999999--97599729999069----93689729999999999999999779688799999908989
Q ss_pred HHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHCCEEEEEEECCEEECCCCCCCHHHHHHCCCCCEEEECCCCCCCCCC
Q ss_conf 99999999999076898438999999999999841905999606421079524543667300898359981878888887
Q 005501 245 RAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIP 324 (693)
Q Consensus 245 ~~iv~~lA~~~aG~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (693)
++++++|||+++|++++|+++.++.+++.++++.++++.++++.... .....+..........+.......
T Consensus 77 e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~--- 147 (534)
T d1v25a_ 77 RHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLL------PLVEAIRGELKTVQHFVVMDEKAP--- 147 (534)
T ss_dssp HHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH------HHHHHHGGGCSSCCEEEESSSCCC---
T ss_pred HHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHH------HHHHHHHHCCCCCCEEEEEECCCC---
T ss_conf 99999999998492999509999999999999741033323552011------247777502565422577503531---
Q ss_pred CCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEECCHHHHHHHHHHC--HHCCCCCCCEEEE
Q ss_conf 77776637887301699999998887668999927999146998986658953506899998730--4137888989998
Q 005501 325 LREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW--AHIDLKVGDVYCW 402 (693)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~--~~~~~~~~d~~l~ 402 (693)
......... .. .........++++++++|||||||.||||+++|+++++...... ..+.....+++++
T Consensus 148 --~~~~~~~~~-~~-------~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~ 217 (534)
T d1v25a_ 148 --EGYLAYEEA-LG-------EEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLP 217 (534)
T ss_dssp --TTCEEHHHH-CC-------SCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEE
T ss_pred --CCCCCCCCC-CC-------CCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf --000000112-34-------45553343567717999743788886521022441665311000000235444663432
Q ss_pred ECCCCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCCCCCCCEEEEECCC
Q ss_conf 27862002258879888709789993699990239999998199199402699999991596899997660079942599
Q 005501 403 PTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGET 482 (693)
Q Consensus 403 ~~~~~~~~~~~~~~~~l~~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~i~~~Ge~ 482 (693)
.+|+.|..+....+.++..|+++++.....++..+...+.++++|.+.++|+++..+.........++++||.+++||++
T Consensus 218 ~~p~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~lr~~~~gG~~ 297 (534)
T d1v25a_ 218 VVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSA 297 (534)
T ss_dssp CSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSC
T ss_pred CCCHHHHCCCCCCCEEEEECCEEEECCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCC
T ss_conf 36424414310000001203125621433331000001121244433467156666665420244554431499994687
Q ss_pred CCCCHHHHHHHHCCCCCEECCCCCCCCCCEECCCCCCCC----------CCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 992018999860778853124134434440225886787----------7647557788995499987999977999981
Q 005501 483 SNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQP----------QAFGAFSTATMTAGLVILDECGVPYPDDQPC 552 (693)
Q Consensus 483 l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~----------~~~~~iG~p~~~~~~~i~d~~g~~~p~g~~~ 552 (693)
+++...+++.+. +.++.+.||+||++..++....... ...+++|+|++|++++|+|+++++++.+..+
T Consensus 298 ~~~~~~~~~~~~--~~~i~~~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~~~~~~~~~~ 375 (534)
T d1v25a_ 298 APRSLIARFERM--GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKA 375 (534)
T ss_dssp CCHHHHHHHHHT--TCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCC
T ss_pred CCHHHHHHHHHH--CCEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCE
T ss_conf 887899999984--982365036543356122034676555667311356666400013783899999999997789980
Q ss_pred EEEEEE-----ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEECCCCEEEEEECCCCCCCCCEEEEHHHH
Q ss_conf 026998-----244579863224642323212225457884146536459994498299995438821249744303779
Q 005501 553 VGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEI 627 (693)
Q Consensus 553 iGel~v-----~~~y~~~~~~~~~~~~t~~~f~~~~~~~g~~~y~TGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eI 627 (693)
+|||++ ..||++ +++.+...|..+ +||+|||+|++++||+++++||+||+||++|++|+|.||
T Consensus 376 ~Gel~v~g~~v~~gY~~------~~~~t~~~~~~d------g~~~TGDlg~~~~~G~l~~~GR~~~~i~~~G~~v~~~eI 443 (534)
T d1v25a_ 376 LGEVQLKGPWITGGYYG------NEEATRSALTPD------GFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDL 443 (534)
T ss_dssp CEEEEEESTTSBSSCBT------CHHHHHTTBCTT------SCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHH
T ss_pred EEEEEECCCCCCCEECC------CHHHHHHHCCCC------CCCCCCCEEEECCCCCEEEECCCCCEEEECCEEECHHHH
T ss_conf 68999757864661248------825512305368------987569664898991489913656479989999988999
Q ss_pred HHHHHCCCCCCCEEEEEEECCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEC
Q ss_conf 99972049651102899653899995179999996399999968999999999984249983210
Q 005501 628 ERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 628 E~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~L~~~~~P~~~v~ 692 (693)
|++|. +||+|.+|+|++++++..+ +.++|+|+++++.....+.++..+++.|+.|++|..+++
T Consensus 444 E~~l~-~~~~V~~a~v~~~~~~~~~-~~l~a~vv~~~~~~~~~~~~~~~~~~~l~~~~~P~~i~~ 506 (534)
T d1v25a_ 444 ENALM-GHPKVKEAAVVAIPHPKWQ-ERPLAVVVPRGEKPTPEELNEHLLKAGFAKWQLPDAYVF 506 (534)
T ss_dssp HCC-----------CEEEEECSSSS-EEEEECC-------------------CCCTTTSCSBC--
T ss_pred HHHHH-HCCCCCEEEEEEEECCCCC-EEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEE
T ss_conf 99998-1998146999999879999-699999996899999899999999836996778638999
No 4
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}
Probab=100.00 E-value=0 Score=523.99 Aligned_cols=471 Identities=16% Similarity=0.170 Sum_probs=380.8
Q ss_pred CCCCCEEEEEECCCCCCCCCEEECHHHHHHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHHHHHHCCEEEECCCC
Q ss_conf 999947999943788888621540999999999999999860-6999999998499999999999999907689843899
Q 005501 188 KEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADS 266 (693)
Q Consensus 188 ~~pd~~Al~~~~~~~~~~~~~~lTy~eL~~~~~~lA~~L~~~-v~~gd~V~i~~~~s~~~iv~~lA~~~aG~~~vpl~~~ 266 (693)
..|+.+|+++.+.+ .++||+||.+++.++|++|+++ +++||+|+|+++|++++++++|||+++|++++|+++.
T Consensus 32 ~~P~~~a~~d~~~~------~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~~v~~lA~~~~G~i~vpl~~~ 105 (541)
T d1lcia_ 32 LVPGTIAFTDAHIE------VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDI 105 (541)
T ss_dssp TSTTCEEEEETTTC------CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSSTHHHHHHHHHHTCEEEECCTT
T ss_pred CCCCEEEEEECCCC------EEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHCEEEEECCCC
T ss_conf 79984999928999------185299999999999999997595997999999089799999999999859099954988
Q ss_pred CCHHHHHHHHHHCCEEEEEEECCEEECCCCCCCHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHCCCCC--CCC
Q ss_conf 999999999984190599960642107952454366730089835998187888888777776637887301699--999
Q 005501 267 FAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY--HPR 344 (693)
Q Consensus 267 ~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 344 (693)
++.+++.+++++++++++|+++... +.+..+....+....++....... ......+.+....... ...
T Consensus 106 ~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 175 (541)
T d1lcia_ 106 YNERELLNSMNISQPTVVFVSKKGL------QKILNVQKKLPIIQKIIIMDSKTD----YQGFQSMYTFVTSHLPPGFNE 175 (541)
T ss_dssp CCHHHHHHHHHHHCCSEEEECGGGH------HHHHHHHHHCTTCCEEEETTCSSC----BTTBEEHHHHHHHHSCTTCCT
T ss_pred CCHHHHHHHHHHCCCEEEEEECCCC------CCCHHCCCCCCCCCEEEEECCCCC----CCCCCHHHHHHHHHCCCCCCC
T ss_conf 8999999999742660886421333------221000123223320354057765----433101455555312543322
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCCCCCCEEEECCHHHHHHHHHHCH---HCCCCCCCEEEEECCCCCCCHHHHHHHHHHC
Q ss_conf 9988876689999279991469989866589535068999987304---1378889899982786200225887988870
Q 005501 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA---HIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (693)
Q Consensus 345 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~ 421 (693)
....+.....++++++|+|||||||.||+|+++|++++....+... ...+.+++++++..|+.|..+....+..+..
T Consensus 176 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 255 (541)
T d1lcia_ 176 YDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLIC 255 (541)
T ss_dssp TTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 23476445887763799740355433322111221166665666530223334433322221222222222222222222
Q ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCEE
Q ss_conf 97899936999902399999981991994026999999915968999976600799425999920189998607788531
Q 005501 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (693)
Q Consensus 422 G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~ 501 (693)
|+..+... ..+.......+..+++|.+.++|+++..+.........++++++.+++||+++++...+++.+.++...++
T Consensus 256 ~~~~~~~~-~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~ 334 (541)
T d1lcia_ 256 GFRVVLMY-RFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIR 334 (541)
T ss_dssp TCEEEECS-SCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGGGSCCTTCCEEECTTCCCCHHHHHHHHHHTTCSCCB
T ss_pred CCCCCCCC-CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 22222222-22231167787652012233576421122234421001355221788645534454321111246775266
Q ss_pred CCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEC-CCCCCCCCCCCCEEEEEE-----ECCCCCCCCCCCCCCCC
Q ss_conf 241344344402258867877647557788995499987-999977999981026998-----24457986322464232
Q 005501 502 ESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHE 575 (693)
Q Consensus 502 ~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~g~~~p~g~~~iGel~v-----~~~y~~~~~~~~~~~~t 575 (693)
+.||+||++..++... ......+++|+|++|++++|+| +++++++.|+. |||++ ..||++ +++.+
T Consensus 335 ~~YG~TE~~~~~~~~~-~~~~~~~svG~p~~~~~~~i~d~d~~~~~~~g~~--Gel~v~g~~~~~gY~~------~~~~~ 405 (541)
T d1lcia_ 335 QGYGLTETTSAILITP-EGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQR--GELCVRGPMIMSGYVN------NPEAT 405 (541)
T ss_dssp CEECCGGGSSCSEECC-CC---CCCCBEECTTCEEEEECTTTCCBCCTTCC--EEEEEESTTSCSEETT------BHHHH
T ss_pred ECCCCCCCCCEEEECC-CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCE--EEEEECCCCCCCEECC------CHHHH
T ss_conf 3577652475388667-5568777631055897799997999959999984--7999913863776678------96662
Q ss_pred CCCCCCCCCCCCCEEEEECCEEEEECCCCEEEEEECCCCCCCCCEEEEHHHHHHHHHCCCCCCCEEEEEEECCCCCCCEE
Q ss_conf 32122254578841465364599944982999954388212497443037799997204965110289965389999517
Q 005501 576 EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEV 655 (693)
Q Consensus 576 ~~~f~~~~~~~g~~~y~TGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~ 655 (693)
...+. +++||+|||+|++++||+++++||+||+||++|++|+|.|||++|. +||+|.+|+|++++++..| +.
T Consensus 406 ~~~~~------~~~~~~TGDl~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~IE~~l~-~~p~V~~~~v~~~~~~~~g-~~ 477 (541)
T d1lcia_ 406 NALID------KDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILL-QHPNIFDAGVAGLPDDDAG-EL 477 (541)
T ss_dssp HHHBC------TTSCEEEEEEEEECTTCCEEEC-----CEEETTEEECHHHHHHHHH-TSTTEEEEEEEEEEETTTE-EE
T ss_pred HHCCC------CCCCCCCCCEEEECCCEEEEEEEEECCEEEECCEEECHHHHHHHHH-HCCCCCEEEEEEEECCCCC-EE
T ss_conf 21004------7754347995178688179993213488999999998999999998-1998027999999879999-79
Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCCCEEC
Q ss_conf 99999963999999689999999999842-49983210
Q 005501 656 LVIFVVLKKGFTSQPDKLKMIFSKAIQSK-LNPLFKVW 692 (693)
Q Consensus 656 l~a~vv~~~~~~~~~~~l~~~l~~~L~~~-~~P~~~v~ 692 (693)
++++|+++++...+.++++++++++|..+ ++|..++.
T Consensus 478 ~~a~v~~~~~~~~~~~~l~~~~~~~l~~~~~~p~~i~~ 515 (541)
T d1lcia_ 478 PAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVF 515 (541)
T ss_dssp EEEEEEECTTCCCCHHHHHHHHHHHSCGGGSCTTEEEE
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCEEEE
T ss_conf 99999978999999999999998757764569718999
No 5
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}
Probab=100.00 E-value=0 Score=506.37 Aligned_cols=456 Identities=18% Similarity=0.174 Sum_probs=380.1
Q ss_pred HHHCCCCCCCCCCCCCEEEEEECCCCCCCCCEEECHHHHHHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHHHHH
Q ss_conf 23016766678999947999943788888621540999999999999999860-69999999984999999999999999
Q 005501 177 ECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIIL 255 (693)
Q Consensus 177 ~~~l~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTy~eL~~~~~~lA~~L~~~-v~~gd~V~i~~~~s~~~iv~~lA~~~ 255 (693)
..+++++ |+++||++|+++.++ ++||+||.++++++|++|+++ +++||+|+++++|++++++++|||++
T Consensus 26 ~~l~~~~--a~~~Pd~~Al~~~~~--------~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~~ 95 (514)
T d1amua_ 26 HQLFEEQ--VSKRPNNVAIVCENE--------QLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLK 95 (514)
T ss_dssp HHHHHHH--HHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHCCCCEEEEECCE--------EECHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHH
T ss_conf 9999999--984899739998994--------681999999999999999974968849999993898999999999998
Q ss_pred HCCEEEECCCCCCHHHHHHHHHHCCEEEEEEECCEEECCCCCCCHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCHHHH
Q ss_conf 07689843899999999999984190599960642107952454366730089835998187888888777776637887
Q 005501 256 AGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDF 335 (693)
Q Consensus 256 aG~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (693)
+|++++|+++.++.+++.++++++++++++++.... ..+................
T Consensus 96 ~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~---------~~~~~~~~~~~~~~~~~~~---------------- 150 (514)
T d1amua_ 96 AGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLV---------HLIHNIQFNGQVEIFEEDT---------------- 150 (514)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH---------HHHTTSCCCSEEEECCCST----------------
T ss_pred HCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEHHHH---------HHHHHHCCCCCCCCCCCCC----------------
T ss_conf 696999868889999999877434874999830245---------5554310222222222212----------------
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEECCHHHHHHHHHHCHHCCCCCCCEEEEECCCCCCCHHHHH
Q ss_conf 30169999999888766899992799914699898665895350689999873041378889899982786200225887
Q 005501 336 LSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVIL 415 (693)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 415 (693)
... ........+..++++++|+|||||||.||+|+++|+++..........+.....+++++..|++|..++..+
T Consensus 151 -~~~----~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~ 225 (514)
T d1amua_ 151 -IKI----REGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEM 225 (514)
T ss_dssp -TTT----SCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHH
T ss_pred -CCC----CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCC
T ss_conf -222----456667789985661699973688877532222222222222222222222234544210002322443210
Q ss_pred HHHHHCCCEEEEECC--CCCHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHH
Q ss_conf 988870978999369--999023999999819919940269999999159689999766007994259999201899986
Q 005501 416 FSSFLNGATLALYQG--SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSS 493 (693)
Q Consensus 416 ~~~l~~G~~lvi~~~--~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~ 493 (693)
+.++..|+++++... ..+...+++.+..+.++.+..+|..... ....++++++.++++|+++++++.+++..
T Consensus 226 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~G~~~~~~~~~~~~~ 299 (514)
T d1amua_ 226 FMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVH------LDPERILSIQTLITAGSATSPSLVNKWKE 299 (514)
T ss_dssp HHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTT------SCTTTCCSCSEEEEESSCCCHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCC------CCCCCCCCCCEEEEECCCCCHHHHHHHCC
T ss_conf 010221110012344333304555566665312211110110112------22124554538998214589788543135
Q ss_pred HCCCCCEECCCCCCCCCCEECCCCC--CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEE-----ECCCCCCC
Q ss_conf 0778853124134434440225886--7877647557788995499987999977999981026998-----24457986
Q 005501 494 KAWYNAIIESCGGTELSSAYIQGSL--LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGAS 566 (693)
Q Consensus 494 ~~~~~~i~~~YG~TE~~~~~~~~~~--~~~~~~~~iG~p~~~~~~~i~d~~g~~~p~g~~~iGel~v-----~~~y~~~~ 566 (693)
+..+++.||+||++.+.+.... ......++.|.++++..+.+.|+++++++.|+ .|||+| .+||++
T Consensus 300 ---~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~g~--~GEl~v~~~~~~~gY~~-- 372 (514)
T d1amua_ 300 ---KVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGE--AGELCIGGEGLARGYWK-- 372 (514)
T ss_dssp ---TSEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTC--EEEEEEEETTCCCEETT--
T ss_pred ---CEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEEEECCCCEECCCCC--EEEEEECCCCCCCCCCC--
T ss_conf ---51699741256673355411356555576666664023335765114633569997--25999725854464203--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEECCCCEEEEEECCCCCCCCCEEEEHHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf 32246423232122254578841465364599944982999954388212497443037799997204965110289965
Q 005501 567 DRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISV 646 (693)
Q Consensus 567 ~~~~~~~~t~~~f~~~~~~~g~~~y~TGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~ 646 (693)
++..+.+.|..+++.++++||+|||+|++++||+|+++||+||+||++|++|+|.+||++|. +||+|.+|+|+++
T Consensus 373 ----~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~l~i~GR~~d~i~~~G~~i~p~~IE~~l~-~~~~V~~~~V~~~ 447 (514)
T d1amua_ 373 ----RPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILL-KHMYISETAVSVH 447 (514)
T ss_dssp ----CHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHT-TSTTEEEEEEEEE
T ss_pred ----CCCCCCEEEEECCCCCCCCEEEECCEEEECCCCCEEEEECCCCEEEECCEEECHHHHHHHHH-HCCCCCEEEEEEE
T ss_conf ----54455002675135688836897787899899849999426687998999999999999997-1998268999988
Q ss_pred CCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEECC
Q ss_conf 38999951799999963999999689999999999842499832109
Q 005501 647 SPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVWC 693 (693)
Q Consensus 647 ~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~L~~~~~P~~~v~~ 693 (693)
+++..+ +.++|+|+++++ .+.++++++++++|+.|++|..+++.
T Consensus 448 ~~~~~g-~~~~a~v~~~~~--~~~~~l~~~~~~~l~~~~~p~~i~~v 491 (514)
T d1amua_ 448 KDHQEQ-PYLCAYFVSEKH--IPLEQLRQFSSEELPTYMIPSYFIQL 491 (514)
T ss_dssp ECTTSC-EEEEEEEEESSC--CCHHHHHHHHHHHSCGGGSCSEEEEC
T ss_pred ECCCCC-EEEEEEEECCCC--CCHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 878898-799999982899--99999999998438756586099996
No 6
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}
Probab=100.00 E-value=0 Score=497.43 Aligned_cols=472 Identities=18% Similarity=0.189 Sum_probs=372.6
Q ss_pred HHHCCCCCCCCCCCCCEEEEEECCCCCCCCCEEECHHHHHHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHHHHH
Q ss_conf 23016766678999947999943788888621540999999999999999860-69999999984999999999999999
Q 005501 177 ECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIIL 255 (693)
Q Consensus 177 ~~~l~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTy~eL~~~~~~lA~~L~~~-v~~gd~V~i~~~~s~~~iv~~lA~~~ 255 (693)
..++.++ |+++||++|+++.++ ++||+||.++++++|++|.+. +++||+|+++++|++++++++|||++
T Consensus 28 ~~~l~~~--a~~~pd~~Al~~~~~--------~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~ 97 (536)
T d1mdba_ 28 GDLLRDR--AAKYGDRIAITCGNT--------HWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFR 97 (536)
T ss_dssp HHHHHHH--HHHHTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHCCCCEEEEECCE--------EECHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHH
T ss_conf 9999999--987799759998997--------684999999999999999975968869999993897999999999998
Q ss_pred HCCEEEECCCCCCHHHHHHHHHHCCEEEEEEECCEEECCCCCCCHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCHHHH
Q ss_conf 07689843899999999999984190599960642107952454366730089835998187888888777776637887
Q 005501 256 AGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDF 335 (693)
Q Consensus 256 aG~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (693)
+|++++|+++.++.+++.+++++++++.+++++........ ..........+.....+..... .....+.+.
T Consensus 98 ~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 169 (536)
T d1mdba_ 98 LGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYR-SLARQVQSKLPTLKNIIVAGEA-------EEFLPLEDL 169 (536)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHH-HHHHHHHHHCTTCCCEEEESCC-------TTSEEGGGC
T ss_pred HCCEEEECCCCCCHHHHHHHHHHHCCCEEECCCHHHHHHHH-HHHHHHHHCCCCCCCEEEEECC-------CCCCCHHHC
T ss_conf 59499955987899999999974101367324200122222-3332210100233320232022-------234522220
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEECCHHHHHHHHHHCHHCCCCCCCEEEEECCCCCCCHHH-H
Q ss_conf 301699999998887668999927999146998986658953506899998730413788898999827862002258-8
Q 005501 336 LSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-I 414 (693)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~ 414 (693)
.. .........++++++|+|||||||.||||++||+++...+.+....+++.+++++++..++.|.+++. .
T Consensus 170 ~~--------~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~l~~~ 241 (536)
T d1mdba_ 170 HT--------EPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSP 241 (536)
T ss_dssp CC--------CCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSS
T ss_pred CC--------CCCCCCCCCCCCHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
T ss_conf 35--------7767876675446776412466311000101222222222222222223443332222233322220001
Q ss_pred HHHHHHC-CCEEEEECCCCCHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHH
Q ss_conf 7988870-978999369999023999999819919940269999999159689999766007994259999201899986
Q 005501 415 LFSSFLN-GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSS 493 (693)
Q Consensus 415 ~~~~l~~-G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~ 493 (693)
++..++. |.+++..+ .+++..++..+++++++.+..+|+.+..+..........+++++.+++||+++++...+++..
T Consensus 242 ~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~~~ 320 (536)
T d1mdba_ 242 GVLGVLYAGGRVVLSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKA 320 (536)
T ss_dssp HHHHHHHTTCEEEECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHH
T ss_pred CCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCHHH
T ss_conf 1223123554223568-899899999976520233222211466654301333225675505998413334443210121
Q ss_pred HCCCCCEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCC-CCEEEEECCCCCCCCCCCCCEEEEEE-----ECCCCCCCC
Q ss_conf 077885312413443444022588678776475577889-95499987999977999981026998-----244579863
Q 005501 494 KAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATM-TAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASD 567 (693)
Q Consensus 494 ~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~-~~~~~i~d~~g~~~p~g~~~iGel~v-----~~~y~~~~~ 567 (693)
.+ +......||.+|.+..+...........+++|+|++ +....|.++++++++.|+ .|||++ ..||.+
T Consensus 321 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~v~~~~g~~~~~~~--~Gel~v~g~~~~~gY~~--- 394 (536)
T d1mdba_ 321 VF-GCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGE--TGHLLTRGPYTIRGYYK--- 394 (536)
T ss_dssp HT-CSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTC--CEEEEEECTTSCSSCTT---
T ss_pred CC-CCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCC--CCEEECCCCCCCCCCCC---
T ss_conf 25-7322102343321123321121123456775567778624799769897603422--43141378864332002---
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEECCCCEEEEEECCCCCCCCCEEEEHHHHHHHHHCCCCCCCEEEEEEEC
Q ss_conf 22464232321222545788414653645999449829999543882124974430377999972049651102899653
Q 005501 568 RLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVS 647 (693)
Q Consensus 568 ~~~~~~~t~~~f~~~~~~~g~~~y~TGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~ 647 (693)
+...+...+. ..+||+|||++++++||+|+++||+||+||++|++|+|.|||++|. +||+|.+|+|++++
T Consensus 395 ---~~~~~~~~~~------~~~~~~tGD~~~~~~dG~l~~~GR~~d~i~~~G~~i~p~~IE~~l~-~~p~V~~a~vvg~~ 464 (536)
T d1mdba_ 395 ---AEEHNAASFT------EDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLL-AHPAVHDAAMVSMP 464 (536)
T ss_dssp ---CHHHHHHHBC------TTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHT-TSTTEEEEEEEEEE
T ss_pred ---CCCCCCCCCC------CCCCCCCCCCCCCCCCCCEECCCCCCEEEEECCEEECHHHHHHHHH-HCCCCCEEEEEEEE
T ss_conf ---3323311223------5675335752110699866647875508998999998899999998-39982579999988
Q ss_pred CCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHH-HHHHCCCCCEECC
Q ss_conf 899995179999996399999968999999999-9842499832109
Q 005501 648 PAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKA-IQSKLNPLFKVWC 693 (693)
Q Consensus 648 ~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~-L~~~~~P~~~v~~ 693 (693)
++..| +.++|||+++++ ..+.++++++++++ |+.|+.|..++.+
T Consensus 465 ~~~~g-~~~~a~v~~~~~-~~~~~~l~~~l~~~~l~~~~~P~~i~~v 509 (536)
T d1mdba_ 465 DQFLG-ERSCVFIIPRDE-APKAAELKAFLRERGLAAYKIPDRVEFV 509 (536)
T ss_dssp ETTTE-EEEEEEEEESSS-CCCHHHHHHHHHHTTCCGGGSCSEEEEC
T ss_pred CCCCC-EEEEEEEEECCC-CCCHHHHHHHHHHCCCCCCCCCCEEEEE
T ss_conf 68898-599999997999-9999999999973699867585589998
No 7
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}
Probab=100.00 E-value=0 Score=467.69 Aligned_cols=471 Identities=18% Similarity=0.109 Sum_probs=364.8
Q ss_pred HHHCCCCCCCCCCCCCEEEEEECCCCCCCCCEEECHHHHHHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHHHHH
Q ss_conf 23016766678999947999943788888621540999999999999999860-69999999984999999999999999
Q 005501 177 ECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIIL 255 (693)
Q Consensus 177 ~~~l~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTy~eL~~~~~~lA~~L~~~-v~~gd~V~i~~~~s~~~iv~~lA~~~ 255 (693)
.+++..+ |+++||++|+++.+.+ +++||+||.++++++|++|++. +++||+|+++++|++++++++|||++
T Consensus 5 ~~~l~~~--a~~~pd~~al~~~~~~------~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~ 76 (503)
T d3cw9a1 5 NEMLRRA--ATRAPDHCALAVPARG------LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHR 76 (503)
T ss_dssp HHHHHHH--HHHSTTSEEEEEGGGT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHCCCCEEEEECCCC------CEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHH
T ss_conf 9999999--9868997699989999------3871999999999999999976969979999993898999999999998
Q ss_pred HCCEEEECCCCCCHHHHHHHHHHCCEEEEEEECCEEECCCCCCCHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCHHHH
Q ss_conf 07689843899999999999984190599960642107952454366730089835998187888888777776637887
Q 005501 256 AGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDF 335 (693)
Q Consensus 256 aG~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (693)
+|++++|+++.++.+++.++++++++++++++... ..............+ +.+.++
T Consensus 77 ~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~-------~~~~~~~~~~~~~~~-----------------i~~~~~ 132 (503)
T d3cw9a1 77 LGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGR-------QVADAIFQSGSGARI-----------------IFLGDL 132 (503)
T ss_dssp HTCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCH-------HHHHHHHHTTCCCEE-----------------EEHHHH
T ss_pred HCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCH-------HHHHHHHHHCCCCCC-----------------CCCHHH
T ss_conf 59599975899999999999972587579951306-------777787653144432-----------------210001
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEECCHHHHHHHHHHCHHCC--CCCCCEEEEECCCCCCCHHH
Q ss_conf 3016999999988876689999279991469989866589535068999987304137--88898999827862002258
Q 005501 336 LSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID--LKVGDVYCWPTNLGWVMGPV 413 (693)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~--~~~~d~~l~~~~~~~~~~~~ 413 (693)
...................++++++++|||||||.||+|+++|+++...+......+. ....+++++.+|+.|..+..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 212 (503)
T d3cw9a1 133 VRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFF 212 (503)
T ss_dssp EETTEECCCSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHHHH
T ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 11100122477544532111333443112244434344311221123332220232322222222223457642222223
Q ss_pred -HHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECHHHHHHHHHCCC--CCCCCCCCCCEEEEECCCCCCCHHHH
Q ss_conf -879888709789993699990239999998199199402699999991596--89999766007994259999201899
Q 005501 414 -ILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLW 490 (693)
Q Consensus 414 -~~~~~l~~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~lr~i~~~Ge~l~~~~~~~ 490 (693)
..+.+...++.+++.+ ..++..++..+..++++.+..+|+.+..+..... .....+++||.+++||++++++...+
T Consensus 213 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~i~~gG~~~~~~~~~~ 291 (503)
T d3cw9a1 213 AVLVAALALDGTYVVVE-EFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLET 291 (503)
T ss_dssp TTHHHHHHTTCEEEECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTTCCCTTCCEEEECSSCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCC
T ss_conf 22222212234323466-56857754311110000011222222221244433343446651479974365444532222
Q ss_pred HHHHCCCCCEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 98607788531241344344402258867877647557788995499987999977999981026998244579863224
Q 005501 491 LSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLL 570 (693)
Q Consensus 491 ~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~g~~~p~g~~~iGel~v~~~y~~~~~~~~ 570 (693)
+...+ +..+.+.||.||++.......... ......+.+.+.....+.+..++.++.|+. |++.+.........++.
T Consensus 292 ~~~~~-~~~~~~~yg~~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--g~~~~~~~~~~~~~~~~ 367 (503)
T d3cw9a1 292 VHQHL-PGEKVNIYGTTEAMNSLYMRQPKT-GTEMAPGFFSEVRIVRIGGGVDEIVANGEE--GELIVAASDSAFVGYLN 367 (503)
T ss_dssp HHHHC-CSEEEEEEEETTTEEEEEEESCSS-SSEEBCCTTCCEEEECTTSCTTCBCCTTCC--EEEEEECCTTSCCCBTT
T ss_pred CCCCC-CCCCCCCCCCCCCCEEEEECCCCC-CCCCCCCCCCCCEEEEEECCCCCCCCCCCC--CCCCCCCCCCCCCCCCC
T ss_conf 22222-211235445421120121012234-444443355421256530246863689852--20011112222222357
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEECCEEEEECCCCEEEEEECCCCCCCCCEEEEHHHHHHHHHCCCCCCCEEEEEEECCCC
Q ss_conf 64232321222545788414653645999449829999543882124974430377999972049651102899653899
Q 005501 571 NADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAG 650 (693)
Q Consensus 571 ~~~~t~~~f~~~~~~~g~~~y~TGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~ 650 (693)
++..+.+.|. +| ||+|||+|++++||+|+++||+||+||++|++|+|.|||++|. +||+|.+|+|++++++.
T Consensus 368 ~~~~t~~~~~-----~g--~~~TgD~g~~~~dG~l~~~GR~~d~ik~~G~~v~~~~IE~~l~-~~p~V~~~~v~~~~~~~ 439 (503)
T d3cw9a1 368 QPQATAEKLQ-----DG--WYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLG-TAPGVTEVVVIGLADQR 439 (503)
T ss_dssp CHHHHHHHEE-----TT--EEEEEEEEEECTTSCEEEEEESSCCEEETTEEECHHHHHHHHT-TSTTEEEEEEEEEEETT
T ss_pred CHHHHHHHHC-----CC--CEECCCCCCCCCCCEEEECCCCCCEEEECCEEECHHHHHHHHH-HCCCCCEEEEEEEECCC
T ss_conf 7343487731-----88--5111354530248858857876786998999998899999998-19981579999788788
Q ss_pred CCCEEEEEEEEECCCCCCCHHHHHHHHH-HHHHHHCCCCCEECC
Q ss_conf 9951799999963999999689999999-999842499832109
Q 005501 651 GGPEVLVIFVVLKKGFTSQPDKLKMIFS-KAIQSKLNPLFKVWC 693 (693)
Q Consensus 651 ~g~~~l~a~vv~~~~~~~~~~~l~~~l~-~~L~~~~~P~~~v~~ 693 (693)
.| +.++|||+++++...+.++++++++ ++|+.|+.|..++.+
T Consensus 440 ~g-~~~~a~v~~~~~~~~~~~~l~~~~~~~~l~~~~~P~~i~~v 482 (503)
T d3cw9a1 440 WG-QSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFIL 482 (503)
T ss_dssp TE-EEEEEEEEECTTCCCCHHHHHHHHHHSSSCGGGSCSEEEEC
T ss_pred CC-EEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEE
T ss_conf 98-18999999678999999999999986689977783389998
No 8
>d1l5aa2 c.43.1.2 (A:175-424) VibH {Vibrio cholerae [TaxId: 666]}
Probab=98.46 E-value=2.4e-10 Score=76.04 Aligned_cols=131 Identities=7% Similarity=-0.090 Sum_probs=95.7
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCC--CC--CCC
Q ss_conf 9881999056689999999998630599-836687999996731889988874145678755012378999--96--456
Q 005501 13 LMKVGLKLEEAEEFDKILKQVISCSKGL-DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP--PL--YWF 87 (693)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~hq~~pfe~~l~~~l~~~r~~~~~~~plf~v~~~~~~~~~~~--~~--~~~ 87 (693)
.++..+...+..+|.++++++++...++ .||+||++. |++.++..+. ..++ |+++|++++..... .. .+.
T Consensus 104 ~lP~r~~~~~~~t~~~ll~~v~~~~~~~~~h~~~~~~~-i~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 178 (250)
T d1l5aa2 104 SLPLLRLSAQQTSLGNYLKQSGQAIRSLYLHGRYRIEQ-IEQDQGLNAE--QSYF--MSPFINILPFESPHFADCQTELK 178 (250)
T ss_dssp EEEEECCCCTTCBHHHHHHHHHHHHHHHHHTTTSCHHH-HHHHTTCCTT--CCBC--CCSEEEEECCCCCCCTTCEEEEE
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHH-HHHHHCCCCC--CCCC--CCEEEEEECCCCCCCCCCCEEEE
T ss_conf 02699970788979999999999998751114799999-9998568887--8986--56699920167667788701797
Q ss_pred CCCCCCCCCCHHHHHHHH-CCCCCCCC-CCCCCCCHHHHHHHHHHCHHHHHHHHHHHCCCCEECCCEEE
Q ss_conf 890000226568999981-99644555-68998788899999825999999999854552033066020
Q 005501 88 PSLDQSKLTNLGNALEIH-GPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI 154 (693)
Q Consensus 88 ~~~~~~~~~dl~~~~~~~-~~~~~~~~-y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 154 (693)
. .......|+.+.+... ++.+...+ |+. ++|...+++.+.++|..+++++...++++..++
T Consensus 179 ~-~~~~~~~dl~l~v~~~~~~~l~l~~~y~~-----~~~~~~~i~~l~~~~~~ll~~l~~~p~~~~~~l 241 (250)
T d1l5aa2 179 V-LASGSAEGINFTFRGSPQHELCLDITADL-----ASYPQSHWQSHCERFPRFFEQLLARFQQVEQDV 241 (250)
T ss_dssp E-EEECCCCSEEEEEEECTTSCEEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHHHHHHHTTTTCH
T ss_pred E-EECCCEEEEEEEEEECCCCEEEEEEEEEH-----HHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 6-31233056779999848955999999803-----419999999999999999999995817640023
No 9
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}
Probab=95.27 E-value=0.06 Score=26.58 Aligned_cols=100 Identities=13% Similarity=0.126 Sum_probs=64.1
Q ss_pred CCCCCCEEEEEECCCCCCCC--CEEECHHHHHHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHH-HHHHHHHCCEEEE
Q ss_conf 89999479999437888886--21540999999999999999860-69999999984999999999-9999990768984
Q 005501 187 RKEDNTVAIVWREDRCDESA--VNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVII-YLAIILAGYVVVS 262 (693)
Q Consensus 187 ~~~pd~~Al~~~~~~~~~~~--~~~lTy~eL~~~~~~lA~~L~~~-v~~gd~V~i~~~~s~~~iv~-~lA~~~aG~~~vp 262 (693)
...++.+|++....| .+|. ...+|++.+..........+... +.+++++...++-...+... .+..+..|+..+
T Consensus 183 ~~~~~~~a~i~~TSG-TTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~- 260 (541)
T d1lcia_ 183 FDRDKTIALIMNSSG-STGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVV- 260 (541)
T ss_dssp CCTTTSEEEEEEC------CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEE-
T ss_pred CCCCCCEEEEEEECC-CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-
T ss_conf 588776379974035-543332211122116666566653022333443332222122222222222222222222222-
Q ss_pred CCCCCCHHHHHHHHHHCCEEEEEEEC
Q ss_conf 38999999999999841905999606
Q 005501 263 IADSFAAREIATRLRVSKAKGIFTQD 288 (693)
Q Consensus 263 l~~~~~~~~l~~~l~~~~~~~ii~~~ 288 (693)
.............+...++..+....
T Consensus 261 ~~~~~~~~~~~~~~~~~~~t~~~~~p 286 (541)
T d1lcia_ 261 LMYRFEEELFLRSLQDYKIQSALLVP 286 (541)
T ss_dssp ECSSCCHHHHHHHHHHTTCSEEECCH
T ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCC
T ss_conf 22222231167787652012233576
No 10
>d2ayia1 e.60.1.1 (A:3-408) Aminopeptidase T {Thermus thermophilus [TaxId: 274]}
Probab=47.13 E-value=5.7 Score=14.94 Aligned_cols=50 Identities=14% Similarity=0.216 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHH---CCCCCEEEEECCCC-HHHHH-HHHHHHHHCCEEEECC
Q ss_conf 999999999999860---69999999984999-99999-9999999076898438
Q 005501 215 LREQVMLVANALDTM---FSKGDAIAIDMPMT-VRAVI-IYLAIILAGYVVVSIA 264 (693)
Q Consensus 215 L~~~~~~lA~~L~~~---v~~gd~V~i~~~~s-~~~iv-~~lA~~~aG~~~vpl~ 264 (693)
+.++.+++|..|.+. ++||+.|.|..+.. .+++. ..=++.++||.+|.+.
T Consensus 2 ~~~~L~k~A~llV~~~l~vqkGe~VlI~a~~~~~~Lvral~e~A~~~GA~pv~v~ 56 (406)
T d2ayia1 2 FKRNLEKLAELAIRVGLNLEKGQEVIATAPIEAVDFVRLLAEKAYREGASLFTVI 56 (406)
T ss_dssp CHHHHHHHHHHHHHTTTCCCTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 6799999999999971268999989997166569999999999998699738996
No 11
>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}
Probab=33.49 E-value=9.4 Score=13.65 Aligned_cols=42 Identities=17% Similarity=0.169 Sum_probs=29.3
Q ss_pred EEEECCEEEEECCCCEEEEEECCCCCCCCCEEEEHHHHHHHHH
Q ss_conf 4653645999449829999543882124974430377999972
Q 005501 590 LRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCD 632 (693)
Q Consensus 590 ~y~TGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~ 632 (693)
...|....-+|++|.+.|.||+||.-+. ..++.-.+++++|.
T Consensus 113 v~~~P~~~liD~~G~i~y~G~idd~~~~-~~~~~~~~L~~Ai~ 154 (187)
T d2cvba1 113 ALRTPEVFLFDERRLLRYHGRVNDNPKD-PSKVQSHDLEAAIE 154 (187)
T ss_dssp CCEESEEEEECTTCBEEEEECSSSCTTC-GGGCCCCHHHHHHH
T ss_pred CCCEEEEEEECCCCEEEEEEEECCCCCC-CCCCCHHHHHHHHH
T ss_conf 4310257998689829987663378777-78778899999999
No 12
>d1zjca1 e.60.1.1 (A:3-415) Aminopeptidase S, AMPS {Staphylococcus aureus [TaxId: 1280]}
Probab=28.50 E-value=12 Score=13.15 Aligned_cols=52 Identities=13% Similarity=0.112 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHH---CCCCCEEEEECCCC-HHHHHHH-HHHHHHCCEEEECCCC
Q ss_conf 999999999999860---69999999984999-9999999-9999907689843899
Q 005501 215 LREQVMLVANALDTM---FSKGDAIAIDMPMT-VRAVIIY-LAIILAGYVVVSIADS 266 (693)
Q Consensus 215 L~~~~~~lA~~L~~~---v~~gd~V~i~~~~s-~~~iv~~-lA~~~aG~~~vpl~~~ 266 (693)
+.++.+++|..|.+. ++||+.|.|..+.. .+++-++ =++.++||.+|.+...
T Consensus 2 f~~~L~k~A~llV~~~l~vqkGe~VlI~a~~~~~~lvral~~~a~~aGA~pV~v~~~ 58 (413)
T d1zjca1 2 YKEKLQQYAELLVKVGMNVQPKQPVFIRSSVETLELTHLIVEEAYHCGASDVRVVYS 58 (413)
T ss_dssp HHHHHHHHHHHHHHTTTCCCTTCCEEEEEETTCHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 789999999999998306899998999956743999999999999869964899508
Done!