Query 005502
Match_columns 693
No_of_seqs 759 out of 3896
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 00:28:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005502.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005502hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1310 WD40 repeat protein [G 100.0 3E-101 6E-106 791.3 34.2 653 1-682 1-680 (758)
2 KOG1334 WD40 repeat protein [G 100.0 3E-43 6.5E-48 359.7 16.4 260 12-306 104-363 (559)
3 KOG0271 Notchless-like WD40 re 100.0 4E-32 8.7E-37 270.5 22.4 275 25-336 134-466 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 1.9E-32 4.1E-37 276.5 16.7 245 28-335 197-444 (459)
5 KOG0272 U4/U6 small nuclear ri 100.0 1E-31 2.2E-36 271.2 17.9 237 36-331 161-397 (459)
6 KOG0271 Notchless-like WD40 re 100.0 5.6E-31 1.2E-35 262.4 21.6 262 41-336 106-424 (480)
7 KOG0263 Transcription initiati 100.0 5.1E-31 1.1E-35 285.2 21.2 213 39-312 440-652 (707)
8 KOG0286 G-protein beta subunit 100.0 4.8E-30 1E-34 248.2 25.4 238 40-335 45-329 (343)
9 KOG0279 G protein beta subunit 100.0 2.1E-27 4.6E-32 228.8 24.9 242 39-340 4-252 (315)
10 KOG0279 G protein beta subunit 100.0 1.8E-27 3.9E-32 229.3 22.5 214 36-312 49-265 (315)
11 KOG0291 WD40-repeat-containing 100.0 1.3E-25 2.8E-30 240.8 34.4 252 28-312 330-615 (893)
12 KOG0315 G-protein beta subunit 100.0 1.6E-26 3.4E-31 219.2 24.2 245 27-325 60-304 (311)
13 KOG0263 Transcription initiati 100.0 3.9E-27 8.6E-32 255.2 21.2 242 43-345 371-643 (707)
14 KOG0295 WD40 repeat-containing 100.0 2.8E-27 6E-32 235.2 17.7 246 27-334 129-389 (406)
15 KOG0265 U5 snRNP-specific prot 99.9 1.2E-26 2.5E-31 225.7 21.2 265 42-335 39-322 (338)
16 KOG0286 G-protein beta subunit 99.9 1.4E-26 3E-31 224.3 21.4 224 25-307 116-343 (343)
17 KOG0284 Polyadenylation factor 99.9 8.4E-28 1.8E-32 241.9 12.7 237 39-336 127-365 (464)
18 KOG0315 G-protein beta subunit 99.9 1.6E-25 3.4E-30 212.4 26.5 255 24-336 16-273 (311)
19 KOG0316 Conserved WD40 repeat- 99.9 5.5E-26 1.2E-30 213.8 22.3 259 43-340 10-289 (307)
20 KOG0266 WD40 repeat-containing 99.9 7.4E-26 1.6E-30 250.6 27.1 243 42-340 195-441 (456)
21 KOG0293 WD40 repeat-containing 99.9 1.1E-25 2.4E-30 226.6 25.0 206 43-310 217-426 (519)
22 KOG0273 Beta-transducin family 99.9 8.8E-26 1.9E-30 231.0 24.5 247 27-338 256-510 (524)
23 KOG0285 Pleiotropic regulator 99.9 2.1E-26 4.5E-31 228.1 18.3 216 39-316 140-355 (460)
24 KOG0645 WD40 repeat protein [G 99.9 2.5E-25 5.4E-30 213.7 24.7 220 39-310 3-226 (312)
25 PTZ00421 coronin; Provisional 99.9 4E-25 8.6E-30 244.3 29.9 231 45-332 70-314 (493)
26 KOG0319 WD40-repeat-containing 99.9 1.9E-25 4.1E-30 239.6 24.9 357 45-470 360-724 (775)
27 KOG0282 mRNA splicing factor [ 99.9 2.2E-26 4.8E-31 236.4 16.3 255 41-335 205-488 (503)
28 KOG0284 Polyadenylation factor 99.9 1.5E-26 3.3E-31 232.8 13.6 226 50-337 96-322 (464)
29 KOG0281 Beta-TrCP (transducin 99.9 1.7E-26 3.6E-31 227.7 12.7 218 27-314 216-433 (499)
30 KOG0318 WD40 repeat stress pro 99.9 3.4E-24 7.5E-29 222.0 29.5 287 38-348 178-557 (603)
31 KOG0292 Vesicle coat complex C 99.9 3.8E-25 8.2E-30 240.2 22.5 273 27-335 30-306 (1202)
32 KOG0283 WD40 repeat-containing 99.9 2.4E-25 5.2E-30 243.4 19.9 241 37-311 253-578 (712)
33 KOG0266 WD40 repeat-containing 99.9 1.4E-24 3.1E-29 240.3 26.1 225 41-322 149-377 (456)
34 KOG0277 Peroxisomal targeting 99.9 1.8E-25 3.8E-30 212.7 15.5 227 25-308 80-308 (311)
35 KOG0285 Pleiotropic regulator 99.9 2.4E-24 5.2E-29 213.6 21.4 253 25-310 170-440 (460)
36 KOG0276 Vesicle coat complex C 99.9 1.4E-24 3.1E-29 228.4 20.0 250 26-335 33-283 (794)
37 KOG0291 WD40-repeat-containing 99.9 1.3E-23 2.8E-28 225.5 25.9 249 37-345 294-544 (893)
38 KOG0640 mRNA cleavage stimulat 99.9 2.8E-24 6.1E-29 209.4 18.4 219 44-316 106-342 (430)
39 PTZ00420 coronin; Provisional 99.9 3.8E-23 8.3E-28 229.7 30.0 245 28-333 54-318 (568)
40 KOG0277 Peroxisomal targeting 99.9 1.4E-24 3.1E-29 206.6 15.8 227 49-332 59-289 (311)
41 cd00200 WD40 WD40 domain, foun 99.9 4E-23 8.7E-28 211.4 27.3 229 43-332 2-230 (289)
42 KOG1446 Histone H3 (Lys4) meth 99.9 1.1E-22 2.4E-27 200.2 27.4 263 38-333 2-287 (311)
43 KOG1407 WD40 repeat protein [F 99.9 1.7E-23 3.7E-28 200.0 20.8 263 44-342 14-293 (313)
44 KOG0282 mRNA splicing factor [ 99.9 5.1E-24 1.1E-28 219.1 17.8 247 24-307 233-503 (503)
45 KOG0296 Angio-associated migra 99.9 4.4E-23 9.6E-28 205.6 23.5 263 37-336 93-383 (399)
46 KOG0273 Beta-transducin family 99.9 3.9E-23 8.4E-28 211.8 23.7 238 50-350 235-481 (524)
47 KOG0645 WD40 repeat protein [G 99.9 5.2E-23 1.1E-27 197.8 22.8 229 24-309 79-311 (312)
48 KOG0276 Vesicle coat complex C 99.9 9.2E-24 2E-28 222.3 19.2 237 41-336 4-242 (794)
49 cd00200 WD40 WD40 domain, foun 99.9 4E-22 8.7E-27 203.9 29.0 246 27-335 30-275 (289)
50 KOG0288 WD40 repeat protein Ti 99.9 7.8E-24 1.7E-28 213.7 15.0 254 23-337 192-447 (459)
51 KOG0772 Uncharacterized conser 99.9 2.3E-23 5E-28 215.1 18.6 260 40-337 157-425 (641)
52 PLN00181 protein SPA1-RELATED; 99.9 2.5E-22 5.4E-27 238.3 29.8 228 46-333 479-720 (793)
53 KOG0275 Conserved WD40 repeat- 99.9 2.5E-23 5.4E-28 203.5 17.1 241 45-340 258-498 (508)
54 KOG0264 Nucleosome remodeling 99.9 5.1E-23 1.1E-27 210.9 20.0 231 39-310 166-405 (422)
55 KOG0268 Sof1-like rRNA process 99.9 2E-23 4.3E-28 207.6 15.5 237 43-332 59-326 (433)
56 PLN00181 protein SPA1-RELATED; 99.9 5.3E-22 1.1E-26 235.5 30.4 238 27-308 554-792 (793)
57 KOG0295 WD40 repeat-containing 99.9 6.3E-23 1.4E-27 204.3 18.5 244 32-335 90-348 (406)
58 KOG0278 Serine/threonine kinas 99.9 9E-24 2E-28 200.5 11.7 236 39-312 48-300 (334)
59 KOG0264 Nucleosome remodeling 99.9 1.6E-22 3.4E-27 207.4 20.2 217 48-312 122-350 (422)
60 KOG0647 mRNA export protein (c 99.9 4E-22 8.7E-27 194.3 21.1 263 48-335 25-307 (347)
61 KOG0281 Beta-TrCP (transducin 99.9 1.2E-23 2.7E-28 207.5 10.3 215 49-331 196-410 (499)
62 KOG0313 Microtubule binding pr 99.9 2.8E-22 6.1E-27 200.7 19.1 203 47-309 190-418 (423)
63 KOG0310 Conserved WD40 repeat- 99.9 2.5E-22 5.4E-27 207.1 19.1 245 39-343 57-301 (487)
64 KOG0265 U5 snRNP-specific prot 99.9 6E-22 1.3E-26 193.0 20.7 231 42-308 82-337 (338)
65 KOG0318 WD40 repeat stress pro 99.9 2.8E-21 6.1E-26 200.5 26.4 252 36-315 45-356 (603)
66 KOG0643 Translation initiation 99.9 9.2E-22 2E-26 188.7 21.0 238 37-310 39-318 (327)
67 KOG1332 Vesicle coat complex C 99.9 9.4E-22 2E-26 186.5 18.7 236 26-310 31-287 (299)
68 KOG0305 Anaphase promoting com 99.9 1.5E-21 3.2E-26 208.9 22.6 247 29-338 198-448 (484)
69 KOG0294 WD40 repeat-containing 99.9 2.4E-21 5.3E-26 189.9 21.2 236 37-311 30-283 (362)
70 KOG0319 WD40-repeat-containing 99.9 3.9E-22 8.4E-27 214.3 17.0 223 28-310 387-620 (775)
71 KOG0643 Translation initiation 99.9 4.6E-21 1E-25 183.9 22.5 237 45-336 5-246 (327)
72 KOG0973 Histone transcription 99.9 1.9E-21 4.1E-26 217.9 23.1 235 41-311 60-357 (942)
73 PTZ00421 coronin; Provisional 99.9 7E-21 1.5E-25 210.6 27.5 217 49-316 19-252 (493)
74 KOG0292 Vesicle coat complex C 99.9 6.4E-22 1.4E-26 215.4 18.6 243 45-334 4-263 (1202)
75 KOG0289 mRNA splicing factor [ 99.9 2.8E-21 6.1E-26 196.3 21.6 213 38-310 249-463 (506)
76 KOG0293 WD40 repeat-containing 99.9 7.2E-22 1.6E-26 199.3 17.1 238 38-310 257-514 (519)
77 PTZ00420 coronin; Provisional 99.9 1.2E-20 2.7E-25 209.7 27.9 200 68-318 50-257 (568)
78 KOG0274 Cdc4 and related F-box 99.9 3.9E-21 8.5E-26 213.0 23.7 226 27-320 227-452 (537)
79 KOG0269 WD40 repeat-containing 99.9 3.5E-22 7.6E-27 215.5 14.9 223 52-331 89-319 (839)
80 KOG0313 Microtubule binding pr 99.9 2.9E-21 6.3E-26 193.5 20.3 235 26-312 123-379 (423)
81 KOG0300 WD40 repeat-containing 99.9 1.5E-21 3.3E-26 190.7 17.8 250 39-339 137-416 (481)
82 KOG0310 Conserved WD40 repeat- 99.9 2.1E-21 4.6E-26 200.3 19.8 224 25-311 87-311 (487)
83 KOG0646 WD40 repeat protein [G 99.9 3.7E-21 8E-26 197.5 21.1 248 50-335 81-333 (476)
84 KOG0302 Ribosome Assembly prot 99.9 2.2E-21 4.7E-26 194.1 18.9 249 41-340 142-427 (440)
85 KOG0275 Conserved WD40 repeat- 99.9 1.2E-21 2.7E-26 191.7 16.1 205 48-310 211-424 (508)
86 KOG0641 WD40 repeat protein [G 99.9 3.4E-20 7.4E-25 173.6 25.0 234 46-332 85-330 (350)
87 KOG0299 U3 snoRNP-associated p 99.9 4.3E-21 9.3E-26 196.6 20.6 237 47-334 199-438 (479)
88 KOG0316 Conserved WD40 repeat- 99.9 5.6E-21 1.2E-25 180.2 19.1 243 25-307 36-297 (307)
89 KOG0296 Angio-associated migra 99.9 1.5E-20 3.3E-25 187.6 23.1 251 40-331 54-337 (399)
90 KOG0308 Conserved WD40 repeat- 99.9 1.1E-21 2.4E-26 208.0 15.6 237 42-329 65-305 (735)
91 KOG0553 TPR repeat-containing 99.9 4.5E-22 9.7E-27 196.6 10.1 122 359-490 77-198 (304)
92 KOG0772 Uncharacterized conser 99.9 7.9E-21 1.7E-25 196.5 19.6 245 49-343 213-479 (641)
93 KOG0300 WD40 repeat-containing 99.9 6.9E-21 1.5E-25 186.1 18.0 225 24-312 166-431 (481)
94 KOG4234 TPR repeat-containing 99.9 6.7E-22 1.5E-26 182.8 9.8 128 359-491 91-218 (271)
95 KOG0305 Anaphase promoting com 99.9 8.1E-21 1.8E-25 203.3 19.7 224 25-311 236-463 (484)
96 KOG1036 Mitotic spindle checkp 99.9 3.2E-20 6.9E-25 181.9 21.6 264 50-339 13-292 (323)
97 KOG4283 Transcription-coupled 99.9 1.2E-20 2.6E-25 183.1 18.0 228 47-319 40-286 (397)
98 KOG0289 mRNA splicing factor [ 99.9 2.9E-20 6.3E-25 189.0 21.1 230 51-339 220-450 (506)
99 KOG0308 Conserved WD40 repeat- 99.9 8.4E-21 1.8E-25 201.3 16.6 249 48-344 19-278 (735)
100 KOG0306 WD40-repeat-containing 99.8 7.8E-20 1.7E-24 196.7 22.4 237 44-332 367-603 (888)
101 KOG4227 WD40 repeat protein [G 99.8 2.7E-20 5.8E-25 186.4 15.9 256 11-318 19-283 (609)
102 KOG0288 WD40 repeat protein Ti 99.8 1.3E-20 2.9E-25 190.5 13.7 242 4-306 188-458 (459)
103 KOG0301 Phospholipase A2-activ 99.8 4.2E-20 9E-25 197.5 18.2 202 37-310 88-289 (745)
104 KOG2445 Nuclear pore complex c 99.8 8.5E-19 1.8E-23 171.6 25.3 258 47-310 10-319 (361)
105 KOG0973 Histone transcription 99.8 8.3E-20 1.8E-24 204.9 20.2 239 49-332 12-276 (942)
106 KOG0270 WD40 repeat-containing 99.8 7.8E-20 1.7E-24 186.7 17.6 210 47-311 240-451 (463)
107 KOG0306 WD40-repeat-containing 99.8 1.4E-19 3.1E-24 194.7 19.7 210 41-310 445-665 (888)
108 KOG1332 Vesicle coat complex C 99.8 1.5E-19 3.3E-24 171.6 17.1 246 46-341 7-276 (299)
109 KOG0274 Cdc4 and related F-box 99.8 2.7E-19 5.9E-24 198.4 21.7 223 25-317 268-490 (537)
110 KOG0268 Sof1-like rRNA process 99.8 7.3E-20 1.6E-24 182.4 14.9 225 24-311 85-347 (433)
111 KOG0269 WD40 repeat-containing 99.8 1.9E-19 4.1E-24 194.6 18.4 231 50-334 39-276 (839)
112 KOG0302 Ribosome Assembly prot 99.8 1.7E-19 3.7E-24 180.6 16.4 228 38-302 199-432 (440)
113 KOG0267 Microtubule severing p 99.8 1.3E-20 2.8E-25 202.0 8.6 203 37-300 57-259 (825)
114 KOG4328 WD40 protein [Function 99.8 1.2E-18 2.7E-23 178.5 21.1 260 38-337 174-480 (498)
115 KOG0299 U3 snoRNP-associated p 99.8 7E-19 1.5E-23 180.5 18.9 225 25-299 221-445 (479)
116 KOG1408 WD40 repeat protein [F 99.8 4.7E-19 1E-23 189.1 17.8 258 48-354 457-716 (1080)
117 KOG0267 Microtubule severing p 99.8 3E-20 6.5E-25 199.2 8.6 232 43-335 21-252 (825)
118 KOG1273 WD40 repeat protein [G 99.8 1.8E-18 4E-23 169.5 19.8 260 53-337 26-309 (405)
119 KOG0301 Phospholipase A2-activ 99.8 1.6E-18 3.4E-23 185.6 20.8 222 27-319 34-257 (745)
120 KOG0641 WD40 repeat protein [G 99.8 2.6E-17 5.6E-22 154.4 26.3 245 39-333 22-285 (350)
121 KOG0278 Serine/threonine kinas 99.8 2.6E-19 5.7E-24 170.3 13.0 258 44-342 8-288 (334)
122 KOG1407 WD40 repeat protein [F 99.8 3.7E-18 8E-23 163.7 19.3 224 24-300 38-293 (313)
123 KOG0321 WD40 repeat-containing 99.8 3.3E-18 7.2E-23 181.5 20.9 256 44-335 94-374 (720)
124 KOG0640 mRNA cleavage stimulat 99.8 8.3E-19 1.8E-23 171.4 15.1 243 41-335 163-410 (430)
125 KOG4283 Transcription-coupled 99.8 1.3E-17 2.8E-22 162.2 23.0 179 47-249 98-279 (397)
126 KOG0647 mRNA export protein (c 99.8 6.6E-18 1.4E-22 165.1 21.0 218 44-299 66-313 (347)
127 KOG2096 WD40 repeat protein [G 99.8 2.2E-17 4.7E-22 162.2 22.6 223 43-310 79-309 (420)
128 KOG1274 WD40 repeat protein [G 99.8 1.8E-17 4E-22 182.6 24.4 242 47-342 10-291 (933)
129 KOG0270 WD40 repeat-containing 99.8 3.5E-18 7.5E-23 174.8 17.1 203 53-311 176-406 (463)
130 KOG0642 Cell-cycle nuclear pro 99.8 5.3E-18 1.2E-22 178.1 18.2 250 34-311 278-563 (577)
131 KOG4378 Nuclear protein COP1 [ 99.8 4.1E-18 8.9E-23 175.6 16.9 247 25-333 54-305 (673)
132 KOG0543 FKBP-type peptidyl-pro 99.8 1.8E-18 3.9E-23 178.0 11.8 130 359-492 204-342 (397)
133 KOG0321 WD40 repeat-containing 99.8 1.6E-17 3.4E-22 176.4 18.6 252 45-322 42-314 (720)
134 KOG0283 WD40 repeat-containing 99.8 5E-18 1.1E-22 186.3 15.1 195 36-247 355-577 (712)
135 KOG1539 WD repeat protein [Gen 99.8 1.1E-16 2.3E-21 174.7 24.1 289 36-336 230-632 (910)
136 KOG1007 WD repeat protein TSSC 99.8 6.5E-17 1.4E-21 157.1 19.5 231 37-310 109-362 (370)
137 KOG0307 Vesicle coat complex C 99.7 9.6E-18 2.1E-22 189.1 14.4 231 50-334 64-309 (1049)
138 KOG4648 Uncharacterized conser 99.7 2.2E-18 4.7E-23 171.3 8.0 118 359-486 93-210 (536)
139 KOG0303 Actin-binding protein 99.7 5.3E-17 1.1E-21 163.7 17.7 229 45-332 76-320 (472)
140 KOG1036 Mitotic spindle checkp 99.7 4.7E-16 1E-20 152.9 23.5 211 48-299 52-294 (323)
141 KOG0639 Transducin-like enhanc 99.7 3.8E-17 8.3E-22 168.7 16.1 223 50-308 465-703 (705)
142 KOG0290 Conserved WD40 repeat- 99.7 1.1E-16 2.3E-21 155.8 17.5 233 48-332 94-346 (364)
143 KOG1446 Histone H3 (Lys4) meth 99.7 6.1E-16 1.3E-20 152.8 22.8 214 37-309 87-303 (311)
144 KOG0548 Molecular co-chaperone 99.7 1.3E-17 2.7E-22 175.9 10.9 120 359-488 354-473 (539)
145 KOG0639 Transducin-like enhanc 99.7 8.6E-17 1.9E-21 166.1 16.4 233 40-334 410-646 (705)
146 KOG0307 Vesicle coat complex C 99.7 1.8E-17 3.9E-22 186.9 11.8 219 38-312 104-330 (1049)
147 KOG0547 Translocase of outer m 99.7 2E-17 4.3E-22 171.7 10.7 120 359-488 111-231 (606)
148 KOG0646 WD40 repeat protein [G 99.7 1.6E-16 3.4E-21 163.7 16.4 223 28-296 103-336 (476)
149 KOG0303 Actin-binding protein 99.7 4.8E-16 1E-20 156.9 18.4 180 90-320 78-260 (472)
150 KOG4328 WD40 protein [Function 99.7 3.2E-16 7E-21 160.9 17.3 196 90-309 183-399 (498)
151 KOG0644 Uncharacterized conser 99.7 5.8E-17 1.3E-21 176.2 12.4 279 34-352 174-469 (1113)
152 KOG1408 WD40 repeat protein [F 99.7 3.4E-16 7.3E-21 167.5 17.8 228 28-310 481-714 (1080)
153 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 5.9E-15 1.3E-19 154.1 26.2 262 28-331 11-300 (300)
154 KOG0294 WD40 repeat-containing 99.7 3.5E-16 7.6E-21 153.9 15.5 200 8-249 43-284 (362)
155 KOG1034 Transcriptional repres 99.7 2.2E-16 4.8E-21 156.0 13.3 240 38-310 123-384 (385)
156 KOG2106 Uncharacterized conser 99.7 5.8E-15 1.3E-19 153.1 23.9 235 45-337 240-507 (626)
157 KOG0650 WD40 repeat nucleolar 99.7 2E-15 4.3E-20 159.3 20.6 250 42-343 392-672 (733)
158 KOG1063 RNA polymerase II elon 99.7 1.9E-15 4.2E-20 162.1 20.4 286 26-336 167-633 (764)
159 KOG4378 Nuclear protein COP1 [ 99.7 1.3E-15 2.8E-20 157.4 18.1 207 26-291 99-305 (673)
160 KOG1539 WD repeat protein [Gen 99.7 1.6E-15 3.4E-20 165.7 19.1 199 50-310 448-649 (910)
161 KOG1009 Chromatin assembly com 99.7 1.3E-15 2.7E-20 154.6 15.8 278 7-312 30-375 (434)
162 KOG1273 WD40 repeat protein [G 99.7 1.6E-15 3.5E-20 149.0 15.9 234 26-310 43-323 (405)
163 KOG0550 Molecular chaperone (D 99.7 1.7E-16 3.8E-21 162.0 9.2 129 357-492 243-371 (486)
164 KOG1188 WD40 repeat protein [G 99.7 4.3E-15 9.2E-20 147.8 18.6 199 63-312 41-245 (376)
165 KOG2055 WD40 repeat protein [G 99.7 2.3E-15 5E-20 154.7 17.0 225 31-309 283-512 (514)
166 KOG1007 WD repeat protein TSSC 99.7 3.3E-15 7.1E-20 145.3 16.6 216 43-310 56-290 (370)
167 KOG1538 Uncharacterized conser 99.7 2E-15 4.3E-20 160.5 16.3 231 37-310 40-294 (1081)
168 KOG0551 Hsp90 co-chaperone CNS 99.7 4.6E-16 1E-20 154.9 10.8 106 361-472 79-184 (390)
169 KOG2048 WD40 repeat protein [G 99.6 3.4E-14 7.3E-19 152.5 24.9 235 48-335 23-259 (691)
170 KOG2055 WD40 repeat protein [G 99.6 6.9E-15 1.5E-19 151.3 18.9 231 50-339 213-453 (514)
171 KOG1063 RNA polymerase II elon 99.6 4.8E-15 1E-19 159.0 18.4 225 43-309 518-763 (764)
172 KOG0290 Conserved WD40 repeat- 99.6 8.2E-15 1.8E-19 142.7 17.9 203 48-300 148-357 (364)
173 KOG1188 WD40 repeat protein [G 99.6 6E-15 1.3E-19 146.8 16.1 249 28-310 50-347 (376)
174 KOG2048 WD40 repeat protein [G 99.6 6.8E-14 1.5E-18 150.2 24.1 250 28-332 47-302 (691)
175 KOG1034 Transcriptional repres 99.6 4.4E-15 9.5E-20 146.9 13.2 257 48-333 87-365 (385)
176 KOG0376 Serine-threonine phosp 99.6 9.9E-16 2.1E-20 160.6 8.7 127 362-498 3-129 (476)
177 KOG1274 WD40 repeat protein [G 99.6 4.4E-14 9.5E-19 156.3 21.8 207 42-304 88-295 (933)
178 KOG1587 Cytoplasmic dynein int 99.6 5.8E-14 1.3E-18 155.0 22.9 226 40-310 233-517 (555)
179 KOG2919 Guanine nucleotide-bin 99.6 3.8E-14 8.2E-19 140.0 19.1 239 50-337 104-356 (406)
180 TIGR03866 PQQ_ABC_repeats PQQ- 99.6 2.1E-13 4.6E-18 142.3 26.1 243 62-338 1-265 (300)
181 KOG1524 WD40 repeat-containing 99.6 6.5E-15 1.4E-19 153.5 13.1 194 38-308 92-285 (737)
182 KOG0322 G-protein beta subunit 99.6 3.4E-14 7.4E-19 136.8 16.2 243 41-309 5-323 (323)
183 KOG2106 Uncharacterized conser 99.6 1.3E-13 2.8E-18 143.2 21.7 281 44-347 98-432 (626)
184 KOG2096 WD40 repeat protein [G 99.6 7.8E-14 1.7E-18 137.4 18.7 215 48-307 185-400 (420)
185 KOG1523 Actin-related protein 99.6 2.5E-13 5.3E-18 134.4 22.3 227 49-312 9-239 (361)
186 KOG1310 WD40 repeat protein [G 99.6 1.8E-13 3.8E-18 143.4 22.3 182 87-308 45-230 (758)
187 KOG0771 Prolactin regulatory e 99.6 2.9E-14 6.4E-19 145.9 15.5 202 54-310 148-355 (398)
188 KOG0548 Molecular co-chaperone 99.6 6E-15 1.3E-19 155.9 10.7 113 363-485 2-114 (539)
189 KOG2919 Guanine nucleotide-bin 99.6 2.2E-13 4.7E-18 134.7 19.7 214 52-316 51-288 (406)
190 KOG2445 Nuclear pore complex c 99.6 2.8E-13 6.1E-18 133.2 20.2 219 85-335 5-237 (361)
191 KOG1517 Guanine nucleotide bin 99.6 1.6E-13 3.4E-18 153.2 20.5 265 2-311 1103-1383(1387)
192 KOG1009 Chromatin assembly com 99.6 6.6E-14 1.4E-18 142.3 15.5 214 50-299 13-250 (434)
193 KOG1445 Tumor-specific antigen 99.6 4.8E-14 1E-18 149.4 14.5 204 50-310 627-845 (1012)
194 KOG0649 WD40 repeat protein [G 99.5 1E-12 2.2E-17 125.3 19.5 220 51-316 11-242 (325)
195 KOG1240 Protein kinase contain 99.5 1.8E-12 3.9E-17 147.1 22.4 233 38-320 1036-1284(1431)
196 KOG1445 Tumor-specific antigen 99.5 2E-13 4.4E-18 144.7 13.9 202 60-312 589-801 (1012)
197 KOG2110 Uncharacterized conser 99.5 1.3E-11 2.8E-16 124.5 24.8 217 51-310 88-331 (391)
198 COG2319 FOG: WD40 repeat [Gene 99.5 2.3E-11 5E-16 130.9 29.0 229 27-315 86-320 (466)
199 KOG1517 Guanine nucleotide bin 99.5 2.8E-12 6E-17 143.5 20.9 217 47-311 1061-1289(1387)
200 KOG4227 WD40 repeat protein [G 99.5 5E-12 1.1E-16 127.5 20.7 256 41-310 95-388 (609)
201 PRK01742 tolB translocation pr 99.5 5E-12 1.1E-16 139.7 22.4 225 43-332 196-426 (429)
202 KOG0545 Aryl-hydrocarbon recep 99.5 1.5E-13 3.4E-18 131.4 8.6 129 359-491 174-315 (329)
203 COG2319 FOG: WD40 repeat [Gene 99.5 3.5E-11 7.6E-16 129.4 27.9 229 45-331 60-294 (466)
204 KOG0642 Cell-cycle nuclear pro 99.4 1.1E-12 2.4E-17 138.4 14.9 193 26-247 314-562 (577)
205 KOG0649 WD40 repeat protein [G 99.4 5.1E-12 1.1E-16 120.6 17.7 209 43-310 55-275 (325)
206 KOG4642 Chaperone-dependent E3 99.4 9.3E-14 2E-18 132.7 5.6 101 360-470 7-107 (284)
207 KOG1538 Uncharacterized conser 99.4 2.5E-12 5.4E-17 137.3 16.4 236 52-335 14-277 (1081)
208 KOG1587 Cytoplasmic dynein int 99.4 4.4E-11 9.6E-16 132.3 25.5 239 72-339 222-504 (555)
209 KOG1523 Actin-related protein 99.4 7E-12 1.5E-16 124.2 16.6 205 24-248 28-238 (361)
210 PLN03088 SGT1, suppressor of 99.4 1.5E-12 3.2E-17 139.6 12.8 118 363-490 2-119 (356)
211 KOG2321 WD40 repeat protein [G 99.4 2E-10 4.2E-15 121.7 27.3 250 35-336 37-328 (703)
212 KOG0650 WD40 repeat nucleolar 99.4 4.6E-12 1E-16 134.3 15.3 214 45-306 516-732 (733)
213 KOG0644 Uncharacterized conser 99.4 6.7E-13 1.5E-17 145.0 8.2 247 27-312 211-471 (1113)
214 PRK11028 6-phosphogluconolacto 99.4 2.7E-10 5.8E-15 121.6 27.7 267 28-338 12-290 (330)
215 KOG2110 Uncharacterized conser 99.4 1.2E-10 2.6E-15 117.6 22.0 195 52-311 48-250 (391)
216 KOG1963 WD40 repeat protein [G 99.3 1.3E-10 2.7E-15 129.1 23.6 237 28-312 37-378 (792)
217 KOG2139 WD40 repeat protein [G 99.3 1.4E-10 3E-15 116.7 20.2 203 50-304 98-306 (445)
218 KOG0771 Prolactin regulatory e 99.3 4.2E-11 9.1E-16 122.9 15.3 187 97-336 148-339 (398)
219 KOG1272 WD40-repeat-containing 99.3 7E-12 1.5E-16 129.5 9.3 215 51-331 130-344 (545)
220 PRK04922 tolB translocation pr 99.3 5.4E-10 1.2E-14 123.7 23.2 206 41-311 194-413 (433)
221 KOG2394 WD40 protein DMR-N9 [G 99.3 7.8E-11 1.7E-15 123.8 15.3 180 60-288 183-383 (636)
222 KOG3881 Uncharacterized conser 99.3 2E-10 4.2E-15 116.9 17.4 236 45-333 100-343 (412)
223 KOG2139 WD40 repeat protein [G 99.3 8E-10 1.7E-14 111.3 21.4 227 47-310 193-432 (445)
224 KOG2111 Uncharacterized conser 99.3 5.2E-10 1.1E-14 111.1 19.7 222 52-312 7-259 (346)
225 PRK02889 tolB translocation pr 99.3 1E-09 2.2E-14 121.2 24.6 228 43-332 188-425 (427)
226 PRK05137 tolB translocation pr 99.2 1.4E-09 3E-14 120.6 25.1 206 41-312 192-415 (435)
227 KOG1963 WD40 repeat protein [G 99.2 8.1E-10 1.8E-14 122.8 22.6 271 24-311 223-540 (792)
228 PRK03629 tolB translocation pr 99.2 1.2E-09 2.5E-14 120.7 24.0 223 43-331 191-427 (429)
229 KOG1354 Serine/threonine prote 99.2 1.6E-10 3.5E-15 115.4 15.3 241 50-319 25-311 (433)
230 KOG0322 G-protein beta subunit 99.2 8.2E-11 1.8E-15 113.8 12.6 163 48-245 148-322 (323)
231 KOG4497 Uncharacterized conser 99.2 2.9E-10 6.3E-15 113.0 16.2 268 55-340 13-380 (447)
232 KOG1524 WD40 repeat-containing 99.2 1.7E-10 3.7E-15 121.0 13.8 206 63-346 76-281 (737)
233 KOG1334 WD40 repeat protein [G 99.2 2E-10 4.3E-15 119.6 14.0 283 28-340 164-455 (559)
234 KOG1240 Protein kinase contain 99.2 8.4E-10 1.8E-14 125.9 19.3 216 77-334 1034-1251(1431)
235 KOG1272 WD40-repeat-containing 99.2 2.9E-11 6.2E-16 125.0 6.7 216 52-334 172-392 (545)
236 KOG2111 Uncharacterized conser 99.2 1E-08 2.3E-13 102.0 24.1 185 24-249 70-259 (346)
237 PRK11028 6-phosphogluconolacto 99.2 9.1E-09 2E-13 109.8 25.1 217 51-310 80-305 (330)
238 KOG0280 Uncharacterized conser 99.1 3.1E-09 6.8E-14 104.5 18.5 209 49-312 68-287 (339)
239 PF08662 eIF2A: Eukaryotic tra 99.1 2.5E-09 5.4E-14 104.6 17.3 149 54-246 9-179 (194)
240 TIGR00990 3a0801s09 mitochondr 99.1 2.4E-10 5.2E-15 132.4 11.3 105 361-476 125-229 (615)
241 KOG2394 WD40 protein DMR-N9 [G 99.1 1.8E-10 3.9E-15 121.1 9.1 104 41-157 281-384 (636)
242 PRK15359 type III secretion sy 99.1 1.1E-09 2.4E-14 101.8 12.8 104 366-479 27-130 (144)
243 PRK01742 tolB translocation pr 99.1 3.6E-09 7.7E-14 117.0 18.3 202 71-340 183-390 (429)
244 KOG0280 Uncharacterized conser 99.1 2.6E-09 5.6E-14 105.1 14.9 206 53-310 124-334 (339)
245 TIGR02800 propeller_TolB tol-p 99.0 2.6E-08 5.7E-13 109.8 23.3 204 42-310 181-398 (417)
246 KOG3881 Uncharacterized conser 99.0 8.4E-09 1.8E-13 105.2 16.5 165 52-251 150-325 (412)
247 PF08662 eIF2A: Eukaryotic tra 99.0 8.6E-09 1.9E-13 100.8 15.8 112 49-179 58-180 (194)
248 KOG0974 WD-repeat protein WDR6 99.0 1.5E-08 3.2E-13 114.7 19.3 194 57-311 94-290 (967)
249 KOG1064 RAVE (regulator of V-A 99.0 1.8E-09 4E-14 126.9 12.0 194 46-311 2204-2400(2439)
250 KOG2321 WD40 repeat protein [G 99.0 1.2E-08 2.5E-13 108.5 16.6 201 55-310 138-344 (703)
251 KOG1409 Uncharacterized conser 99.0 9.8E-09 2.1E-13 103.0 14.9 244 38-311 12-272 (404)
252 PRK05137 tolB translocation pr 99.0 7.3E-08 1.6E-12 106.9 23.7 203 72-340 182-395 (435)
253 PRK04922 tolB translocation pr 99.0 3.1E-08 6.7E-13 109.7 20.3 203 72-340 184-397 (433)
254 TIGR02552 LcrH_SycD type III s 99.0 5.4E-09 1.2E-13 95.9 11.9 121 358-488 12-132 (135)
255 PRK00178 tolB translocation pr 99.0 1E-07 2.3E-12 105.5 24.2 203 43-310 191-407 (430)
256 PRK15363 pathogenicity island 98.9 5.5E-09 1.2E-13 96.1 10.5 117 346-472 17-134 (157)
257 KOG0974 WD-repeat protein WDR6 98.9 4.1E-09 8.9E-14 119.1 11.0 137 26-180 153-290 (967)
258 PRK04792 tolB translocation pr 98.9 1.5E-07 3.3E-12 104.5 23.5 221 45-331 212-446 (448)
259 KOG1308 Hsp70-interacting prot 98.9 6.9E-10 1.5E-14 112.0 3.8 106 358-473 109-214 (377)
260 PRK02889 tolB translocation pr 98.9 9.7E-08 2.1E-12 105.5 20.8 205 72-340 176-389 (427)
261 KOG1354 Serine/threonine prote 98.9 2.6E-08 5.5E-13 100.0 13.9 236 51-315 85-365 (433)
262 PRK03629 tolB translocation pr 98.9 3.5E-07 7.5E-12 101.1 23.9 203 73-341 180-393 (429)
263 KOG4497 Uncharacterized conser 98.9 4E-07 8.7E-12 91.0 20.8 261 46-335 87-416 (447)
264 KOG4190 Uncharacterized conser 98.8 1.1E-08 2.3E-13 107.8 9.8 176 44-255 729-915 (1034)
265 COG5170 CDC55 Serine/threonine 98.8 5.6E-08 1.2E-12 96.3 14.0 239 49-316 25-316 (460)
266 KOG0309 Conserved WD40 repeat- 98.8 1.4E-08 3.1E-13 110.4 10.6 241 50-343 24-267 (1081)
267 PRK01029 tolB translocation pr 98.8 1.1E-06 2.5E-11 96.8 25.5 231 45-332 179-425 (428)
268 TIGR02800 propeller_TolB tol-p 98.8 6.3E-07 1.4E-11 98.8 23.4 201 72-338 170-381 (417)
269 KOG0624 dsRNA-activated protei 98.8 1.5E-08 3.2E-13 102.0 9.1 112 357-478 32-143 (504)
270 PRK10370 formate-dependent nit 98.8 6.1E-08 1.3E-12 95.1 12.7 126 356-493 66-192 (198)
271 KOG1409 Uncharacterized conser 98.8 2.8E-08 6E-13 99.9 9.0 93 32-126 179-271 (404)
272 KOG4714 Nucleoporin [Nuclear s 98.7 8E-08 1.7E-12 93.2 11.6 171 40-247 79-255 (319)
273 KOG0546 HSP90 co-chaperone CPR 98.7 1.3E-08 2.9E-13 103.5 6.5 132 357-492 216-360 (372)
274 KOG4547 WD40 repeat-containing 98.7 5.2E-07 1.1E-11 96.9 18.2 191 60-310 3-221 (541)
275 KOG0624 dsRNA-activated protei 98.7 3.4E-08 7.3E-13 99.5 8.5 127 360-492 266-392 (504)
276 PF13414 TPR_11: TPR repeat; P 98.7 2.1E-08 4.5E-13 80.5 5.1 66 404-472 3-69 (69)
277 KOG0550 Molecular chaperone (D 98.7 1.5E-08 3.4E-13 104.4 5.1 97 359-465 45-141 (486)
278 KOG4532 WD40-like repeat conta 98.7 3.2E-06 7E-11 82.6 20.3 212 55-319 72-292 (344)
279 PF02239 Cytochrom_D1: Cytochr 98.7 1.3E-06 2.8E-11 94.1 19.6 253 38-339 24-286 (369)
280 PF02239 Cytochrom_D1: Cytochr 98.7 3.8E-06 8.3E-11 90.5 22.9 201 63-315 6-208 (369)
281 PRK11189 lipoprotein NlpI; Pro 98.6 1.3E-07 2.9E-12 99.1 11.0 103 363-475 64-166 (296)
282 PRK00178 tolB translocation pr 98.6 6.9E-06 1.5E-10 91.0 23.8 203 73-340 180-392 (430)
283 PF10282 Lactonase: Lactonase, 98.6 3E-05 6.4E-10 83.3 27.9 230 39-309 75-322 (345)
284 PF10282 Lactonase: Lactonase, 98.6 1.9E-05 4.2E-10 84.7 26.1 261 39-341 26-311 (345)
285 PF00400 WD40: WD domain, G-be 98.6 1.3E-07 2.7E-12 66.5 5.9 38 41-78 2-39 (39)
286 KOG0309 Conserved WD40 repeat- 98.6 1.9E-07 4.2E-12 101.8 10.0 163 52-249 69-235 (1081)
287 KOG3914 WD repeat protein WDR4 98.6 1.6E-06 3.4E-11 89.4 16.0 166 51-255 63-232 (390)
288 PLN02919 haloacid dehalogenase 98.5 2E-05 4.4E-10 95.8 27.4 245 53-312 626-891 (1057)
289 TIGR02795 tol_pal_ybgF tol-pal 98.5 6E-07 1.3E-11 79.9 10.8 108 365-479 4-114 (119)
290 KOG0882 Cyclophilin-related pe 98.5 9.9E-07 2.1E-11 91.7 13.0 278 24-326 26-321 (558)
291 PF13414 TPR_11: TPR repeat; P 98.5 1.6E-07 3.4E-12 75.3 5.5 68 362-438 2-69 (69)
292 KOG2114 Vacuolar assembly/sort 98.5 5.8E-05 1.3E-09 84.7 26.7 213 52-319 27-252 (933)
293 KOG4626 O-linked N-acetylgluco 98.5 2.4E-07 5.1E-12 99.9 7.7 102 366-477 255-356 (966)
294 PRK04792 tolB translocation pr 98.5 1.5E-05 3.2E-10 88.7 22.1 201 73-339 199-410 (448)
295 KOG4555 TPR repeat-containing 98.5 7.5E-07 1.6E-11 77.9 9.0 106 359-474 39-148 (175)
296 KOG1064 RAVE (regulator of V-A 98.5 5.4E-07 1.2E-11 106.8 10.5 152 51-254 2252-2406(2439)
297 KOG1275 PAB-dependent poly(A) 98.5 4.1E-06 8.8E-11 94.0 16.1 186 61-307 146-340 (1118)
298 PRK15331 chaperone protein Sic 98.4 2E-06 4.2E-11 79.7 11.2 123 348-481 22-144 (165)
299 PF15492 Nbas_N: Neuroblastoma 98.4 4.1E-05 9E-10 76.2 21.2 196 52-257 45-270 (282)
300 KOG4532 WD40-like repeat conta 98.4 1.6E-05 3.5E-10 77.8 17.8 199 64-310 130-332 (344)
301 KOG4714 Nucleoporin [Nuclear s 98.4 1.1E-06 2.4E-11 85.5 9.0 167 60-244 142-316 (319)
302 KOG2041 WD40 repeat protein [G 98.4 4.5E-06 9.8E-11 91.0 14.5 245 36-332 57-319 (1189)
303 KOG1832 HIV-1 Vpr-binding prot 98.4 3.1E-07 6.7E-12 101.9 5.6 233 8-311 1058-1293(1516)
304 TIGR02658 TTQ_MADH_Hv methylam 98.4 0.00016 3.6E-09 76.5 25.9 239 38-317 35-338 (352)
305 PLN02919 haloacid dehalogenase 98.4 9.8E-05 2.1E-09 89.9 27.3 240 54-312 571-836 (1057)
306 cd00189 TPR Tetratricopeptide 98.4 2.8E-06 6.1E-11 70.7 9.8 98 366-473 3-100 (100)
307 KOG3914 WD repeat protein WDR4 98.4 1.8E-06 3.9E-11 88.9 10.0 101 68-183 128-228 (390)
308 PF12895 Apc3: Anaphase-promot 98.4 6.7E-07 1.4E-11 74.8 5.8 83 376-467 2-84 (84)
309 COG2706 3-carboxymuconate cycl 98.4 0.00048 1E-08 70.7 27.3 252 48-344 37-313 (346)
310 KOG4547 WD40 repeat-containing 98.4 3.5E-05 7.7E-10 83.1 20.1 182 26-247 13-221 (541)
311 KOG2315 Predicted translation 98.4 6.4E-05 1.4E-09 80.7 21.6 196 49-311 164-392 (566)
312 KOG2695 WD40 repeat protein [G 98.4 1.8E-06 3.8E-11 87.1 9.4 165 57-256 218-386 (425)
313 COG4946 Uncharacterized protei 98.3 5E-05 1.1E-09 79.7 19.9 119 48-181 357-480 (668)
314 KOG2695 WD40 repeat protein [G 98.3 1.2E-06 2.5E-11 88.4 7.5 164 99-313 217-380 (425)
315 PF15492 Nbas_N: Neuroblastoma 98.3 0.00042 9E-09 69.2 25.2 231 56-312 3-262 (282)
316 KOG4190 Uncharacterized conser 98.3 1.5E-06 3.2E-11 92.0 8.5 182 85-312 728-909 (1034)
317 TIGR00990 3a0801s09 mitochondr 98.3 3.3E-06 7.2E-11 98.0 12.4 106 362-477 330-435 (615)
318 KOG2041 WD40 repeat protein [G 98.3 7.3E-06 1.6E-10 89.4 13.3 239 49-337 13-274 (1189)
319 PF13432 TPR_16: Tetratricopep 98.3 1.2E-06 2.7E-11 69.1 5.7 64 409-475 2-65 (65)
320 KOG0547 Translocase of outer m 98.3 2.3E-06 5E-11 90.4 8.9 103 363-475 326-428 (606)
321 COG5170 CDC55 Serine/threonine 98.3 7.4E-06 1.6E-10 81.5 11.6 226 51-310 86-368 (460)
322 KOG1912 WD40 repeat protein [G 98.3 4.3E-05 9.4E-10 84.5 18.5 241 50-334 15-285 (1062)
323 PRK09782 bacteriophage N4 rece 98.2 6.8E-06 1.5E-10 98.5 12.7 107 363-479 609-715 (987)
324 KOG4626 O-linked N-acetylgluco 98.2 3.4E-06 7.4E-11 91.2 8.9 101 371-481 396-496 (966)
325 PRK15359 type III secretion sy 98.2 5.4E-06 1.2E-10 77.0 8.7 85 383-479 12-96 (144)
326 KOG1645 RING-finger-containing 98.2 6.4E-05 1.4E-09 77.6 16.8 87 40-129 183-270 (463)
327 PRK02603 photosystem I assembl 98.2 8.8E-06 1.9E-10 78.1 9.9 109 359-474 31-153 (172)
328 PF13512 TPR_18: Tetratricopep 98.2 1.8E-05 3.8E-10 71.8 11.0 108 363-477 10-135 (142)
329 PF13371 TPR_9: Tetratricopept 98.2 5.2E-06 1.1E-10 67.1 7.0 64 412-478 3-66 (73)
330 COG4235 Cytochrome c biogenesi 98.2 2.1E-05 4.5E-10 79.6 12.7 122 356-484 149-270 (287)
331 KOG4151 Myosin assembly protei 98.2 3.9E-06 8.4E-11 94.0 8.1 126 359-488 49-174 (748)
332 TIGR03302 OM_YfiO outer membra 98.2 1.9E-05 4.2E-10 79.7 12.2 116 359-481 29-155 (235)
333 PF00400 WD40: WD domain, G-be 98.2 6E-06 1.3E-10 57.8 6.0 38 83-123 2-39 (39)
334 PRK04043 tolB translocation pr 98.1 0.0008 1.7E-08 74.0 25.3 193 52-310 189-401 (419)
335 PRK10049 pgaA outer membrane p 98.1 2.1E-05 4.6E-10 93.4 13.8 102 366-477 362-463 (765)
336 TIGR02658 TTQ_MADH_Hv methylam 98.1 0.0023 5E-08 67.9 27.3 234 72-334 27-311 (352)
337 KOG1125 TPR repeat-containing 98.1 6.1E-06 1.3E-10 89.2 7.9 97 370-476 437-533 (579)
338 CHL00033 ycf3 photosystem I as 98.1 2.7E-05 5.8E-10 74.4 11.8 108 361-475 33-154 (168)
339 PRK15179 Vi polysaccharide bio 98.1 1.8E-05 3.8E-10 91.5 12.1 108 360-477 83-190 (694)
340 PRK11189 lipoprotein NlpI; Pro 98.1 8.2E-06 1.8E-10 85.6 8.7 93 380-477 42-134 (296)
341 KOG2066 Vacuolar assembly/sort 98.1 0.00015 3.3E-09 80.9 18.6 166 45-247 53-234 (846)
342 KOG1912 WD40 repeat protein [G 98.1 0.00013 2.8E-09 80.9 17.7 239 37-310 42-305 (1062)
343 PRK10803 tol-pal system protei 98.1 3.2E-05 6.8E-10 79.1 12.2 113 364-483 143-259 (263)
344 PRK12370 invasion protein regu 98.1 9.5E-06 2.1E-10 92.7 8.8 92 376-477 317-408 (553)
345 PRK01029 tolB translocation pr 98.1 0.00027 5.8E-09 78.1 19.6 165 49-249 229-406 (428)
346 COG4946 Uncharacterized protei 98.0 0.0009 2E-08 70.6 21.3 190 59-313 275-481 (668)
347 PF04762 IKI3: IKI3 family; I 98.0 0.00027 5.9E-09 84.6 20.0 218 49-310 208-457 (928)
348 PRK12370 invasion protein regu 98.0 4.7E-05 1E-09 87.1 12.4 108 359-476 334-442 (553)
349 COG2706 3-carboxymuconate cycl 98.0 0.00097 2.1E-08 68.6 20.3 201 71-311 15-223 (346)
350 PF13525 YfiO: Outer membrane 98.0 9.4E-05 2E-09 73.0 12.9 127 362-495 4-147 (203)
351 KOG2314 Translation initiation 98.0 0.00037 8.1E-09 74.7 17.7 74 49-126 249-335 (698)
352 PRK10866 outer membrane biogen 98.0 9.4E-05 2E-09 75.0 12.8 128 362-496 31-182 (243)
353 KOG0882 Cyclophilin-related pe 98.0 7.7E-05 1.7E-09 78.0 12.0 221 49-316 8-238 (558)
354 PF14559 TPR_19: Tetratricopep 98.0 1E-05 2.2E-10 64.4 4.5 59 420-478 4-62 (68)
355 PLN02789 farnesyltranstransfer 97.9 3.8E-05 8.2E-10 80.9 9.8 90 380-476 88-177 (320)
356 KOG4648 Uncharacterized conser 97.9 1.5E-06 3.2E-11 87.8 -1.0 116 364-490 235-350 (536)
357 PF08450 SGL: SMP-30/Gluconola 97.9 0.0037 8E-08 63.6 23.8 216 55-329 4-232 (246)
358 TIGR02521 type_IV_pilW type IV 97.9 0.00014 3E-09 72.0 13.0 105 365-477 101-205 (234)
359 COG5354 Uncharacterized protei 97.9 0.0018 4E-08 69.0 21.4 244 50-335 71-373 (561)
360 PRK09782 bacteriophage N4 rece 97.9 7.2E-05 1.6E-09 89.9 12.3 95 373-478 586-680 (987)
361 TIGR02552 LcrH_SycD type III s 97.9 5E-05 1.1E-09 69.3 8.6 86 385-479 4-89 (135)
362 PRK15174 Vi polysaccharide exp 97.9 5.8E-05 1.3E-09 88.0 11.0 99 370-478 219-321 (656)
363 KOG1008 Uncharacterized conser 97.9 1E-05 2.2E-10 87.8 4.3 225 47-310 99-336 (783)
364 KOG2315 Predicted translation 97.9 0.00064 1.4E-08 73.2 17.5 146 55-246 222-390 (566)
365 PRK15174 Vi polysaccharide exp 97.9 0.00012 2.6E-09 85.3 13.1 106 360-475 281-386 (656)
366 PF11768 DUF3312: Protein of u 97.9 0.00053 1.2E-08 74.8 16.8 136 29-180 185-331 (545)
367 KOG1275 PAB-dependent poly(A) 97.9 0.00019 4E-09 81.1 13.6 157 50-246 177-342 (1118)
368 KOG1126 DNA-binding cell divis 97.8 7.6E-05 1.6E-09 82.1 10.2 125 356-490 482-606 (638)
369 PLN03098 LPA1 LOW PSII ACCUMUL 97.8 4.9E-05 1.1E-09 81.4 8.5 64 404-470 75-141 (453)
370 TIGR02521 type_IV_pilW type IV 97.8 0.00014 2.9E-09 72.1 11.4 101 361-471 29-129 (234)
371 PF04762 IKI3: IKI3 family; I 97.8 0.0056 1.2E-07 73.6 26.6 262 28-310 237-520 (928)
372 COG5354 Uncharacterized protei 97.8 0.00082 1.8E-08 71.6 17.0 227 49-339 31-292 (561)
373 KOG1008 Uncharacterized conser 97.8 2.2E-05 4.7E-10 85.3 5.0 210 50-310 56-276 (783)
374 PF07433 DUF1513: Protein of u 97.8 0.015 3.3E-07 59.9 25.1 224 54-313 8-251 (305)
375 KOG2314 Translation initiation 97.8 0.0018 4E-08 69.6 18.8 219 53-338 213-462 (698)
376 PRK10370 formate-dependent nit 97.8 0.00015 3.1E-09 71.3 10.0 93 376-478 52-147 (198)
377 PF08450 SGL: SMP-30/Gluconola 97.8 0.0068 1.5E-07 61.6 22.6 189 53-298 42-244 (246)
378 PRK04043 tolB translocation pr 97.8 0.0048 1E-07 67.9 22.8 201 73-341 170-387 (419)
379 KOG2066 Vacuolar assembly/sort 97.7 0.00053 1.2E-08 76.7 15.0 191 50-309 39-233 (846)
380 COG5010 TadD Flp pilus assembl 97.7 0.00038 8.2E-09 68.9 11.9 113 359-481 96-208 (257)
381 PRK15179 Vi polysaccharide bio 97.7 0.00028 6.1E-09 81.7 12.9 122 358-489 115-237 (694)
382 PLN02789 farnesyltranstransfer 97.7 0.00021 4.6E-09 75.3 10.7 93 376-477 50-144 (320)
383 KOG1126 DNA-binding cell divis 97.7 7.1E-05 1.5E-09 82.4 6.9 104 364-481 422-529 (638)
384 PF04841 Vps16_N: Vps16, N-ter 97.7 0.046 9.9E-07 60.0 28.9 48 73-125 62-109 (410)
385 PF06977 SdiA-regulated: SdiA- 97.7 0.0043 9.3E-08 62.7 19.0 231 43-306 14-247 (248)
386 PRK10049 pgaA outer membrane p 97.6 0.00033 7.1E-09 83.4 12.6 107 362-479 48-154 (765)
387 KOG1155 Anaphase-promoting com 97.6 0.00054 1.2E-08 72.5 12.5 116 365-490 366-481 (559)
388 PRK11447 cellulose synthase su 97.6 0.00027 5.8E-09 88.1 12.3 117 359-479 299-423 (1157)
389 KOG1155 Anaphase-promoting com 97.6 0.00025 5.4E-09 75.0 9.7 110 369-488 336-445 (559)
390 COG3063 PilF Tfp pilus assembl 97.6 0.0005 1.1E-08 66.8 10.9 106 361-477 33-138 (250)
391 KOG1645 RING-finger-containing 97.6 0.0024 5.1E-08 66.4 16.2 96 74-182 175-270 (463)
392 KOG4162 Predicted calmodulin-b 97.6 0.00021 4.6E-09 79.8 9.1 102 364-475 685-788 (799)
393 PF06552 TOM20_plant: Plant sp 97.6 0.00023 5.1E-09 66.7 7.7 101 380-486 7-125 (186)
394 PLN03098 LPA1 LOW PSII ACCUMUL 97.6 0.00045 9.7E-09 74.1 10.7 74 357-437 69-142 (453)
395 PF13431 TPR_17: Tetratricopep 97.6 4.2E-05 9.2E-10 51.7 1.9 32 430-461 2-33 (34)
396 PF04053 Coatomer_WDAD: Coatom 97.6 0.046 1E-06 60.2 26.7 147 44-246 26-173 (443)
397 PRK11788 tetratricopeptide rep 97.5 0.00031 6.8E-09 76.5 9.6 105 365-474 143-247 (389)
398 TIGR02917 PEP_TPR_lipo putativ 97.5 0.0005 1.1E-08 82.8 12.2 107 361-477 123-229 (899)
399 COG1729 Uncharacterized protei 97.5 0.00091 2E-08 67.1 11.7 109 363-478 141-252 (262)
400 KOG3621 WD40 repeat-containing 97.5 0.0047 1E-07 68.6 17.9 123 49-179 32-155 (726)
401 PF13371 TPR_9: Tetratricopept 97.5 0.00027 5.9E-09 56.9 6.4 68 371-448 3-70 (73)
402 smart00320 WD40 WD40 repeats. 97.4 0.00027 5.9E-09 47.4 5.1 38 41-78 3-40 (40)
403 TIGR03302 OM_YfiO outer membra 97.4 0.0016 3.5E-08 65.6 12.8 110 364-477 71-202 (235)
404 PLN03088 SGT1, suppressor of 97.4 0.00037 8.1E-09 74.9 8.3 68 408-478 6-73 (356)
405 KOG1832 HIV-1 Vpr-binding prot 97.4 0.0002 4.2E-09 80.4 5.7 163 84-311 1093-1257(1516)
406 TIGR03300 assembly_YfgL outer 97.4 0.038 8.3E-07 60.0 23.8 103 61-181 104-211 (377)
407 KOG0553 TPR repeat-containing 97.4 0.00031 6.8E-09 70.8 6.5 66 408-476 85-150 (304)
408 cd00189 TPR Tetratricopeptide 97.4 0.0012 2.7E-08 54.2 9.2 69 406-477 2-70 (100)
409 TIGR02917 PEP_TPR_lipo putativ 97.4 0.0014 2.9E-08 79.0 12.9 104 364-478 771-874 (899)
410 PF00515 TPR_1: Tetratricopept 97.4 0.00013 2.8E-09 49.3 2.3 32 442-473 2-33 (34)
411 PF11768 DUF3312: Protein of u 97.4 0.00079 1.7E-08 73.5 9.5 75 48-127 257-331 (545)
412 PF13429 TPR_15: Tetratricopep 97.3 0.00081 1.7E-08 69.9 9.4 114 361-484 144-257 (280)
413 PRK11447 cellulose synthase su 97.3 0.0013 2.8E-08 82.1 12.8 102 364-475 604-705 (1157)
414 PF13432 TPR_16: Tetratricopep 97.3 0.00032 6.9E-09 55.2 4.8 64 368-441 2-65 (65)
415 PF13360 PQQ_2: PQQ-like domai 97.3 0.01 2.2E-07 59.7 16.4 194 61-312 35-233 (238)
416 PRK11788 tetratricopeptide rep 97.3 0.0016 3.5E-08 70.9 11.3 100 367-476 184-284 (389)
417 PRK11906 transcriptional regul 97.3 0.00071 1.5E-08 72.7 7.7 105 367-477 259-374 (458)
418 COG3063 PilF Tfp pilus assembl 97.2 0.0033 7.1E-08 61.2 11.0 114 357-478 97-210 (250)
419 PF12968 DUF3856: Domain of Un 97.2 0.002 4.3E-08 55.8 8.5 99 366-468 12-127 (144)
420 PRK10153 DNA-binding transcrip 97.2 0.002 4.4E-08 72.4 11.1 57 420-477 433-489 (517)
421 KOG1173 Anaphase-promoting com 97.2 0.0016 3.5E-08 70.7 9.7 115 364-482 415-530 (611)
422 COG4783 Putative Zn-dependent 97.2 0.0034 7.3E-08 67.4 11.8 98 369-476 346-443 (484)
423 PF07433 DUF1513: Protein of u 97.2 0.076 1.7E-06 54.8 21.3 173 56-251 56-252 (305)
424 PF15015 NYD-SP12_N: Spermatog 97.2 0.0012 2.6E-08 69.1 8.2 107 361-471 174-292 (569)
425 KOG2076 RNA polymerase III tra 97.2 0.0048 1E-07 70.5 13.6 113 359-472 135-272 (895)
426 CHL00033 ycf3 photosystem I as 97.2 0.0021 4.7E-08 61.2 9.4 103 371-481 7-112 (168)
427 PF14853 Fis1_TPR_C: Fis1 C-te 97.2 0.0011 2.3E-08 49.7 5.5 44 443-486 3-46 (53)
428 PF07719 TPR_2: Tetratricopept 97.1 0.0004 8.7E-09 46.7 3.0 33 442-474 2-34 (34)
429 KOG1920 IkappaB kinase complex 97.1 0.078 1.7E-06 62.7 23.0 211 51-311 69-324 (1265)
430 TIGR02795 tol_pal_ybgF tol-pal 97.1 0.0021 4.6E-08 56.7 8.3 68 406-476 4-74 (119)
431 TIGR03300 assembly_YfgL outer 97.1 0.047 1E-06 59.3 20.5 197 61-312 64-262 (377)
432 KOG3617 WD40 and TPR repeat-co 97.1 0.002 4.2E-08 72.4 9.4 111 53-179 18-132 (1416)
433 KOG2114 Vacuolar assembly/sort 97.1 0.02 4.4E-07 65.0 17.3 167 100-312 30-204 (933)
434 PF14559 TPR_19: Tetratricopep 97.1 0.00082 1.8E-08 53.2 4.9 65 374-448 2-66 (68)
435 COG2956 Predicted N-acetylgluc 97.1 0.0031 6.7E-08 64.2 9.6 98 373-474 150-247 (389)
436 PF09976 TPR_21: Tetratricopep 97.0 0.0032 7E-08 58.4 9.0 94 366-467 51-144 (145)
437 PRK14574 hmsH outer membrane p 97.0 0.0052 1.1E-07 72.7 11.9 115 359-477 30-172 (822)
438 PF14783 BBS2_Mid: Ciliary BBS 96.9 0.038 8.3E-07 48.0 13.9 104 95-241 1-109 (111)
439 COG4785 NlpI Lipoprotein NlpI, 96.9 0.0023 5.1E-08 61.4 7.1 88 380-476 81-168 (297)
440 PF13424 TPR_12: Tetratricopep 96.9 0.00077 1.7E-08 55.1 3.5 64 404-470 5-75 (78)
441 PF09295 ChAPs: ChAPs (Chs5p-A 96.9 0.0032 7E-08 67.9 9.1 90 371-470 208-297 (395)
442 COG4783 Putative Zn-dependent 96.9 0.0083 1.8E-07 64.5 11.9 110 367-486 310-419 (484)
443 KOG3617 WD40 and TPR repeat-co 96.9 0.0098 2.1E-07 67.0 12.6 71 53-126 62-132 (1416)
444 PRK02603 photosystem I assembl 96.9 0.0034 7.3E-08 60.1 8.2 73 403-478 34-109 (172)
445 COG3204 Uncharacterized protei 96.9 0.16 3.5E-06 51.5 19.8 184 46-247 81-264 (316)
446 PF03704 BTAD: Bacterial trans 96.9 0.011 2.4E-07 54.7 11.3 101 364-468 7-123 (146)
447 KOG2003 TPR repeat-containing 96.9 0.0018 3.8E-08 68.1 6.1 107 363-479 490-596 (840)
448 PF08553 VID27: VID27 cytoplas 96.9 0.062 1.3E-06 62.6 19.2 207 68-310 500-725 (794)
449 PF13360 PQQ_2: PQQ-like domai 96.8 0.097 2.1E-06 52.5 18.7 192 70-312 1-194 (238)
450 PF14783 BBS2_Mid: Ciliary BBS 96.8 0.062 1.3E-06 46.7 14.3 101 53-173 2-109 (111)
451 PF00515 TPR_1: Tetratricopept 96.8 0.0012 2.5E-08 44.5 2.8 33 405-440 2-34 (34)
452 cd05804 StaR_like StaR_like; a 96.8 0.0091 2E-07 64.1 11.1 109 362-474 42-181 (355)
453 KOG2076 RNA polymerase III tra 96.8 0.0062 1.3E-07 69.6 9.8 102 361-471 412-513 (895)
454 PF13429 TPR_15: Tetratricopep 96.7 0.0041 8.8E-08 64.6 7.9 108 371-486 118-225 (280)
455 KOG3060 Uncharacterized conser 96.7 0.013 2.9E-07 57.8 10.4 106 365-481 88-194 (289)
456 PRK14574 hmsH outer membrane p 96.7 0.015 3.3E-07 68.8 12.8 107 362-478 415-521 (822)
457 KOG4640 Anaphase-promoting com 96.7 0.0081 1.8E-07 66.0 9.4 73 51-127 21-94 (665)
458 KOG2002 TPR-containing nuclear 96.6 0.013 2.7E-07 67.7 11.2 120 362-488 269-389 (1018)
459 PF13428 TPR_14: Tetratricopep 96.6 0.0026 5.7E-08 45.7 3.8 38 442-479 2-39 (44)
460 PF12688 TPR_5: Tetratrico pep 96.6 0.018 3.9E-07 51.4 9.9 95 367-468 5-102 (120)
461 KOG0543 FKBP-type peptidyl-pro 96.6 0.01 2.3E-07 62.5 9.2 87 372-468 266-353 (397)
462 PF08596 Lgl_C: Lethal giant l 96.6 0.087 1.9E-06 57.3 16.7 220 34-300 70-327 (395)
463 cd05804 StaR_like StaR_like; a 96.5 0.018 3.9E-07 61.8 11.2 99 365-473 116-218 (355)
464 smart00320 WD40 WD40 repeats. 96.5 0.0063 1.4E-07 40.4 4.9 38 83-123 3-40 (40)
465 COG5010 TadD Flp pilus assembl 96.5 0.016 3.5E-07 57.6 9.5 59 420-478 113-171 (257)
466 PF14938 SNAP: Soluble NSF att 96.5 0.023 4.9E-07 59.2 11.2 123 363-490 114-244 (282)
467 KOG1174 Anaphase-promoting com 96.5 0.029 6.3E-07 59.0 11.5 108 360-474 331-471 (564)
468 PRK15363 pathogenicity island 96.4 0.01 2.3E-07 55.0 7.4 59 420-478 48-106 (157)
469 KOG1920 IkappaB kinase complex 96.3 0.68 1.5E-05 55.1 22.8 210 93-339 68-307 (1265)
470 PRK14720 transcript cleavage f 96.3 0.031 6.7E-07 66.0 12.0 114 359-479 27-154 (906)
471 PF03178 CPSF_A: CPSF A subuni 96.3 0.37 8E-06 51.1 19.3 156 52-246 28-202 (321)
472 PRK02888 nitrous-oxide reducta 96.2 0.14 3.1E-06 57.6 16.1 87 146-247 319-405 (635)
473 KOG4649 PQQ (pyrrolo-quinoline 96.2 1.3 2.9E-05 44.1 20.4 225 62-312 63-354 (354)
474 COG4105 ComL DNA uptake lipopr 96.1 0.099 2.2E-06 52.2 13.0 125 361-492 32-170 (254)
475 PRK11138 outer membrane biogen 96.1 0.55 1.2E-05 51.3 20.1 201 61-312 68-277 (394)
476 PRK10803 tol-pal system protei 96.1 0.017 3.8E-07 59.1 7.6 76 406-484 144-223 (263)
477 PF13181 TPR_8: Tetratricopept 96.1 0.0052 1.1E-07 41.2 2.6 32 442-473 2-33 (34)
478 PRK11138 outer membrane biogen 96.0 0.29 6.3E-06 53.5 17.6 181 64-308 207-393 (394)
479 PF08553 VID27: VID27 cytoplas 96.0 0.31 6.8E-06 56.9 18.3 133 31-178 505-647 (794)
480 KOG1840 Kinesin light chain [C 96.0 0.019 4.2E-07 63.7 8.2 108 359-470 237-354 (508)
481 PF09976 TPR_21: Tetratricopep 96.0 0.13 2.8E-06 47.6 12.4 97 363-466 11-110 (145)
482 PF13424 TPR_12: Tetratricopep 96.0 0.012 2.7E-07 47.9 4.9 71 362-436 4-75 (78)
483 PRK02888 nitrous-oxide reducta 95.9 0.41 8.8E-06 54.1 18.1 224 61-310 140-405 (635)
484 KOG1174 Anaphase-promoting com 95.9 0.031 6.8E-07 58.7 8.7 117 358-477 227-370 (564)
485 PF03178 CPSF_A: CPSF A subuni 95.9 0.37 8E-06 51.1 17.4 186 73-310 3-203 (321)
486 KOG1128 Uncharacterized conser 95.9 0.025 5.4E-07 63.5 8.2 58 420-477 498-555 (777)
487 KOG2003 TPR repeat-containing 95.8 0.012 2.7E-07 62.0 5.3 69 420-488 503-571 (840)
488 KOG1128 Uncharacterized conser 95.8 0.02 4.2E-07 64.3 7.0 90 374-473 496-585 (777)
489 KOG4234 TPR repeat-containing 95.8 0.02 4.4E-07 54.5 6.0 66 365-440 136-201 (271)
490 KOG3621 WD40 repeat-containing 95.8 0.068 1.5E-06 59.7 10.9 124 146-310 32-155 (726)
491 PF13174 TPR_6: Tetratricopept 95.7 0.011 2.3E-07 39.2 3.0 31 443-473 2-32 (33)
492 KOG1125 TPR repeat-containing 95.7 0.066 1.4E-06 58.7 10.6 138 366-523 288-442 (579)
493 PRK10747 putative protoheme IX 95.7 0.11 2.5E-06 56.8 12.9 110 363-482 84-194 (398)
494 PF12895 Apc3: Anaphase-promot 95.7 0.0055 1.2E-07 50.9 1.8 55 421-476 3-59 (84)
495 COG0823 TolB Periplasmic compo 95.7 0.59 1.3E-05 51.4 18.0 122 43-176 185-310 (425)
496 KOG2002 TPR-containing nuclear 95.7 0.053 1.2E-06 62.7 9.9 99 376-478 625-753 (1018)
497 KOG4640 Anaphase-promoting com 95.7 0.048 1E-06 60.2 9.2 77 93-183 20-97 (665)
498 TIGR00540 hemY_coli hemY prote 95.6 0.14 3.1E-06 56.2 13.0 101 363-470 84-216 (409)
499 COG3391 Uncharacterized conser 95.6 2.7 5.8E-05 45.7 22.6 204 53-312 76-286 (381)
500 PRK11906 transcriptional regul 95.5 0.048 1E-06 59.0 8.6 88 380-476 320-407 (458)
No 1
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.6e-101 Score=791.30 Aligned_cols=653 Identities=36% Similarity=0.504 Sum_probs=551.6
Q ss_pred CCCCCCcCcchhhhhcccccCCCCCcCcccccchhhhccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECC
Q 005502 1 MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS 80 (693)
Q Consensus 1 ~~~~~~~~~~~~~~l~~r~~~~~~~~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~ 80 (693)
|++..|.+++|.+.|..|...+.....+...+.+.+++++.++++|+||+|||+||+|+.+|.+|+|||+|..+.|||+.
T Consensus 1 M~~vs~s~~~i~rql~~r~~~~~h~~rq~y~~~s~~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~ 80 (758)
T KOG1310|consen 1 MSGVSLSDGNILRQLDYRDAFQLHISRQIYMGNSTWLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPF 80 (758)
T ss_pred CCceeccchhHhhhccccccchhhhHHHHhccccHHHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecch
Confidence 78899999999999999887776666654558899999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCC
Q 005502 81 SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP 160 (693)
Q Consensus 81 ~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~ 160 (693)
..|+++.+.++|.++|+|++|.|.+++.+++||+.|..|++||+...++...+.+...+...+.+|..+|+.|+..|.+|
T Consensus 81 ~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P 160 (758)
T KOG1310|consen 81 EYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP 160 (758)
T ss_pred hcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCC
Confidence 99999999999999999999999998899999999999999999988888888888889999999999999999999999
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcE
Q 005502 161 HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA 240 (693)
Q Consensus 161 ~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I 240 (693)
+.||++++||+|+++|+|.++.|++....+..+.+...+ ....+|++++|.++.+|++|+.|..+
T Consensus 161 htfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~---------------lielk~ltisp~rp~~laVGgsdpfa 225 (758)
T KOG1310|consen 161 HTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ---------------LIELKCLTISPSRPYYLAVGGSDPFA 225 (758)
T ss_pred ceEEEecCCcceeeecccCCccCCccccccHHHHHhchh---------------hheeeeeeecCCCCceEEecCCCchh
Confidence 999999999999999999999887666555555444322 35789999999999999999999999
Q ss_pred EEEec-CCCCCCcccccCCCC----CCcccccccCccc-cCCC-Cc--cceEEEEEcCCCCEEEEEecCCcEEEEECCCC
Q 005502 241 RLYDR-RMLPPLTSCQKRMSP----PPCVNYFCPMHLS-EHGR-SS--LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (693)
Q Consensus 241 ~lwD~-r~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~h-~~--~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~ 311 (693)
++||+ ++.++...-...+.+ -.|+++|+|+|+. ..+. .. .-++.++|+|+|..|+++.+..+||+||++.+
T Consensus 226 rLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~ 305 (758)
T KOG1310|consen 226 RLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNED 305 (758)
T ss_pred hhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCC
Confidence 99994 455555444443333 3499999999993 3331 11 12688999999999999999999999999996
Q ss_pred CcceEEeecC-----CCce-eEEec-c--CCCcccccCC--cccccccccccccc------cccCcchhhhHHHHHHhhh
Q 005502 312 GGRAMRYTVG-----DASK-IMSFT-P--TLNGLELQPP--IHDFLQTNIRVRGE------VATGLGKCRMLVEIARNSL 374 (693)
Q Consensus 312 ~~~~~~~~~~-----~~~~-~~~~~-p--~~~g~~~~~~--~~~~~~~~~~~~~~------~~~~~~~a~~lk~~gn~~~ 374 (693)
+.+...+.+- .+.. ...|. | ..+.+....+ ......++.+..++ ....++.++..+++||..|
T Consensus 306 ~~~~~y~~~~~~~~~~~~~~~~lfT~~~~~sN~lh~~en~~~~~tP~sr~hrsp~~a~~~~~~eL~e~ie~~~~egnd~l 385 (758)
T KOG1310|consen 306 KSPTPYFLPIEDSNKKPSKPSLLFTQPLKRSNYLHWYENNFGASTPASRVHRSPYTAAQPRFYELPENIEKFKTEGNDGL 385 (758)
T ss_pred CCceeecCcccccccCCCCcchhhccccccccccccccCCccccCCccccccCcccccccchhhchHHHHHHHhhccchh
Confidence 6444333220 0100 00111 0 0111111111 01111222222221 3456778899999999999
Q ss_pred hcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHh
Q 005502 375 EEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQL 454 (693)
Q Consensus 375 ~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~KA~~r~a~al~~l 454 (693)
..+. +..||..|+.++.+.|.. +.||.|||++++||+|.||.++|++||..||++||.+.|||||+++||..|
T Consensus 386 y~~~-~~~~i~~~s~a~q~~~~~------~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el 458 (758)
T KOG1310|consen 386 YESI-VSGAISHYSRAIQYVPDA------IYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNEL 458 (758)
T ss_pred hhHH-HHHHHHHHHHHhhhccch------hHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHH
Confidence 9999 999999999999998776 889999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHcccCCCCchhHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCcccccchhhhccccCCCCCCCCC
Q 005502 455 CKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGP 534 (693)
Q Consensus 455 ~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 534 (693)
+++.||+++..+++..+|.+.+.+..+..+.++|++|.+++.+..-.+.+ ||.+.++++.|.+...+.+.+-.
T Consensus 459 ~r~~eal~~~~alq~~~Ptd~a~~~~v~~l~rDi~aa~~~~~~e~~~~~~-------ri~t~~~~~~r~~~~~~~~~~~~ 531 (758)
T KOG1310|consen 459 TRYLEALSCHWALQMSFPTDVARQNFVLCLPRDISAALFSNPSEMIRAFA-------RIDTDLSSVRRFFWIHKVLRGCL 531 (758)
T ss_pred hhHHHhhhhHHHHhhcCchhhhhhhhhhccccchHHHhccCchhhhhhhh-------eeccchhhhhhhhhhhhhhhhhh
Confidence 99999999999999999998888899999999999999887766544333 99999999999999999888888
Q ss_pred CCCCCCCCchhhhhhcccCCCCCCCCCccccccccCCcceeecccCCCcccccccCCCCCCCCCCCCCCCCCCCCccccc
Q 005502 535 RSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVID 614 (693)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (693)
+.+++|+++|+|.++|.+++..+++.|+.|+|-+.++|++++++-++..+-..+...+.....|+..+|+..|+++.+.|
T Consensus 532 ~l~s~d~~~e~e~p~d~qts~vds~~R~dd~n~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~ssl~nDe~dyq~E~syd 611 (758)
T KOG1310|consen 532 LLISSDIYWEQEQPWDSQTSDVDSSQRLDDENGFLTLLEPPVNYENEVESSSGENIVSMYTGHSSLNNDEDDYQDEESYD 611 (758)
T ss_pred hhhcccccccccCCCCCCceeccccccccccccccccccCccccccccccccccccccccccccccccchhhcccchhhh
Confidence 89999999999999999999999999999999999999999999999865555555554444555589999999999999
Q ss_pred cccccccccccccCceeeeeecCCCCEEEeccCCCcEEEEecCccceeeeeecCCee-eeeecccccch
Q 005502 615 MKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAG-NVISSMEECGL 682 (693)
Q Consensus 615 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 682 (693)
|.+||+||||+.||||||||||.+||||+||||||++|||+|.||+++.++.||+++ ||||---.|-.
T Consensus 612 y~~rYvGHCNv~TDIKeanFlGqrgeyiasgSddgr~fiwek~tg~i~av~~gdssivnciqghP~~~~ 680 (758)
T KOG1310|consen 612 YASRYVGHCNVTTDIKEANFLGQRGEYIASGSDDGRFFIWEKLTGSILAVIHGDSSIVNCIQGHPRCPT 680 (758)
T ss_pred HHhhhccccccccccccccccccCCCeeeEecCCCceEEeecCCcceEEEeeCchhheeeccCCCCCce
Confidence 999999999999999999999999999999999999999999999999999999965 99998766643
No 2
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3e-43 Score=359.73 Aligned_cols=260 Identities=31% Similarity=0.510 Sum_probs=219.2
Q ss_pred hhhhcccccCCCCCcCcccccchhhhccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccC
Q 005502 12 YDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG 91 (693)
Q Consensus 12 ~~~l~~r~~~~~~~~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~ 91 (693)
..-+++|+++++..|.+.+.....+++++.+.+.|.+|.|||+.+.|+..|..|+|||+|.+|.+||+.+++....+..+
T Consensus 104 ~~~l~~Re~gss~~f~~~~~~s~~~vqr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SG 183 (559)
T KOG1334|consen 104 GTALHQRELGSSSRFVYEACGSRLFVQRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESG 183 (559)
T ss_pred hhHHHhhhcCchhHHHHHhhhhHHHHHHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccc
Confidence 45678889998889999999999999999999999999999999999999999999999999999999999999999899
Q ss_pred CCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCc
Q 005502 92 HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT 171 (693)
Q Consensus 92 h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~ 171 (693)
|..+|+..+|.|.+++..+++++.||.|++=.+.... .+ +....+..|.++|..++..|..++.|.|+++|+.
T Consensus 184 H~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~-~~------e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~ 256 (559)
T KOG1334|consen 184 HCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETG-YV------ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAV 256 (559)
T ss_pred cccchhhhhccCCCCCcCceeccccCceeeeeecccc-ce------ecceecccccCccceeeecCCCCCcccccccccc
Confidence 9999999999999988999999999999998876532 22 3345566799999999999999999999999999
Q ss_pred EEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCC
Q 005502 172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL 251 (693)
Q Consensus 172 V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~ 251 (693)
|.-+|+++..+.. .+. .+. ...........++.+|.+.+++++|+.|.++|+||.|.....
T Consensus 257 v~~~Dlr~~~pa~-----------~~~-cr~-------~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e 317 (559)
T KOG1334|consen 257 VFHIDLRQDVPAE-----------KFV-CRE-------ADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKE 317 (559)
T ss_pred eeeeeeccCCccc-----------eee-eec-------cCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhc
Confidence 9999999875321 111 000 011113467899999998899999999999999999976432
Q ss_pred cccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEE
Q 005502 252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLM 306 (693)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lw 306 (693)
.. -..+..|+|.|+....+. .|++++|+.++..|+++..|..||||
T Consensus 318 ~~-------n~~~~~f~p~hl~~d~~v--~ITgl~Ysh~~sElLaSYnDe~IYLF 363 (559)
T KOG1334|consen 318 EN-------NGVLDKFCPHHLVEDDPV--NITGLVYSHDGSELLASYNDEDIYLF 363 (559)
T ss_pred cc-------cchhhhcCCccccccCcc--cceeEEecCCccceeeeecccceEEe
Confidence 21 135788999998873333 59999999999999999999999999
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4e-32 Score=270.54 Aligned_cols=275 Identities=16% Similarity=0.218 Sum_probs=218.9
Q ss_pred CcCcccccchhhhccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeC
Q 005502 25 DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 104 (693)
Q Consensus 25 ~~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~ 104 (693)
..+.++++|+...+ .+.++.+||..-|.|++|+|||+.||||+.||.|++||+.+++++..-..+|...|++++|.|-
T Consensus 134 sGD~TvR~WD~~Te--Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~ 211 (480)
T KOG0271|consen 134 SGDTTVRLWDLDTE--TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPL 211 (480)
T ss_pred CCCceEEeeccCCC--CcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeeccc
Confidence 45678888886554 4788999999999999999999999999999999999999998887655899999999999874
Q ss_pred C---CCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCC
Q 005502 105 T---SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS 181 (693)
Q Consensus 105 ~---~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~ 181 (693)
. ..++|++++.||+|+|||+... .++..+.+|+.+|+|+.|- +..+|+||+.|++|++|+...+.
T Consensus 212 hl~p~~r~las~skDg~vrIWd~~~~----------~~~~~lsgHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~ 279 (480)
T KOG0271|consen 212 HLVPPCRRLASSSKDGSVRIWDTKLG----------TCVRTLSGHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGK 279 (480)
T ss_pred ccCCCccceecccCCCCEEEEEccCc----------eEEEEeccCccceEEEEEc--CCceEEecCCCceEEEEEccchh
Confidence 2 2469999999999999999864 5688899999999999995 45799999999999999988765
Q ss_pred CCCCCC-------------------------------------------------------CCCcccceEEEeccCCcee
Q 005502 182 SCPPAG-------------------------------------------------------SSHQECRNILLDLRCGAKR 206 (693)
Q Consensus 182 ~~~~~~-------------------------------------------------------~~~~~~~~~l~~~~~~~~~ 206 (693)
.+.... ++..+....+|+.... .+
T Consensus 280 ~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~-kk 358 (480)
T KOG0271|consen 280 LCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKS-KK 358 (480)
T ss_pred HHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccc-cc
Confidence 431110 0001111223332221 22
Q ss_pred eecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEE
Q 005502 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT 286 (693)
Q Consensus 207 ~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~ 286 (693)
++....+|...|+.+.|||+ +.++|+++-|..|++||.++++.+.++ +||-. .|..|+
T Consensus 359 pi~rmtgHq~lVn~V~fSPd-~r~IASaSFDkSVkLW~g~tGk~lasf--------------------RGHv~-~VYqva 416 (480)
T KOG0271|consen 359 PITRMTGHQALVNHVSFSPD-GRYIASASFDKSVKLWDGRTGKFLASF--------------------RGHVA-AVYQVA 416 (480)
T ss_pred chhhhhchhhheeeEEECCC-ccEEEEeecccceeeeeCCCcchhhhh--------------------hhccc-eeEEEE
Confidence 44556678889999999997 799999999999999999999766555 45555 699999
Q ss_pred EcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCcc
Q 005502 287 FSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGL 336 (693)
Q Consensus 287 fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~g~ 336 (693)
|+.|.+.|++|+.|.++++||+++.+...-+..+.+.+-.+.|+|+...+
T Consensus 417 wsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV 466 (480)
T KOG0271|consen 417 WSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRV 466 (480)
T ss_pred eccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCcee
Confidence 99999999999999999999999965444444555666666788876544
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.9e-32 Score=276.49 Aligned_cols=245 Identities=20% Similarity=0.261 Sum_probs=208.9
Q ss_pred cccccchhhhccccceEEeccCCCcEEEEEECCC--CCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCC
Q 005502 28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSK--GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105 (693)
Q Consensus 28 ~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~--g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~ 105 (693)
..+++|. ...+..+.+|+||++.|.++.|+|. +..||||+.||+|++|++.+..++..+ .+|...|..++|+|+
T Consensus 197 G~~kvW~--~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l-~gH~~RVs~VafHPs- 272 (459)
T KOG0272|consen 197 GLVKVWS--VPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDL-EGHLARVSRVAFHPS- 272 (459)
T ss_pred CceeEee--cCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhh-hcchhhheeeeecCC-
Confidence 5556655 4455788999999999999999996 679999999999999999988899999 799999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCC
Q 005502 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP 185 (693)
Q Consensus 106 ~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~ 185 (693)
|++|+|++.|.+-++||+++. ..+....+|+..|.+|+|+| ++.+++|||.|..-||||+|++..
T Consensus 273 -G~~L~TasfD~tWRlWD~~tk----------~ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr~--- 337 (459)
T KOG0272|consen 273 -GKFLGTASFDSTWRLWDLETK----------SELLLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRTGRC--- 337 (459)
T ss_pred -Cceeeecccccchhhcccccc----------hhhHhhcccccccceeEecC-CCceeeccCccchhheeecccCcE---
Confidence 799999999999999999975 33566789999999999999 789999999999999999999862
Q ss_pred CCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCccc
Q 005502 186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN 265 (693)
Q Consensus 186 ~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~ 265 (693)
+....+|..+|.+++|+|+ |..||||+.|++++|||+|+.+.+..
T Consensus 338 ----------------------im~L~gH~k~I~~V~fsPN-Gy~lATgs~Dnt~kVWDLR~r~~ly~------------ 382 (459)
T KOG0272|consen 338 ----------------------IMFLAGHIKEILSVAFSPN-GYHLATGSSDNTCKVWDLRMRSELYT------------ 382 (459)
T ss_pred ----------------------EEEecccccceeeEeECCC-ceEEeecCCCCcEEEeeeccccccee------------
Confidence 2233467889999999996 89999999999999999998654322
Q ss_pred ccccCccccCCCCccceEEEEEcC-CCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCc
Q 005502 266 YFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNG 335 (693)
Q Consensus 266 ~~~~~~~~~~~h~~~~V~~v~fsp-dg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~g 335 (693)
.|. |.+ -|+.|.|+| .|.+|++++.|++++||...+......+.+|...+-.+..+|+..-
T Consensus 383 --ipA------H~n-lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~ 444 (459)
T KOG0272|consen 383 --IPA------HSN-LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQA 444 (459)
T ss_pred --ccc------ccc-hhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCce
Confidence 233 444 399999999 7899999999999999999998777777777766666677776543
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=1e-31 Score=271.24 Aligned_cols=237 Identities=23% Similarity=0.322 Sum_probs=206.0
Q ss_pred hhccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeC
Q 005502 36 LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG 115 (693)
Q Consensus 36 ~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~ 115 (693)
..+.+.+...--|-+.+|..+.|+.++..|||||.+|.++||+..+...+.++ .+|.+.|.++.|+|..++..+|||+.
T Consensus 161 ~~~~~~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l-~gH~~~v~~~~fhP~~~~~~lat~s~ 239 (459)
T KOG0272|consen 161 HLQSLELVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTL-RGHTSRVGAAVFHPVDSDLNLATASA 239 (459)
T ss_pred HhhhhhhhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEE-eccccceeeEEEccCCCccceeeecc
Confidence 34445555555678899999999999999999999999999999999889999 79999999999999844679999999
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccce
Q 005502 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (693)
Q Consensus 116 Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~ 195 (693)
||+|++|++... .++..+.+|..+|..++|+| ++++|.|++.|.+-++||+++....
T Consensus 240 Dgtvklw~~~~e----------~~l~~l~gH~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~El------------ 296 (459)
T KOG0272|consen 240 DGTVKLWKLSQE----------TPLQDLEGHLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSEL------------ 296 (459)
T ss_pred CCceeeeccCCC----------cchhhhhcchhhheeeeecC-CCceeeecccccchhhcccccchhh------------
Confidence 999999999864 67899999999999999999 7899999999999999999987532
Q ss_pred EEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccC
Q 005502 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (693)
Q Consensus 196 ~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (693)
..-.+|...|.+|+|+|+ |.++++|+.|..-||||+|++. |+.++ .
T Consensus 297 -------------L~QEGHs~~v~~iaf~~D-GSL~~tGGlD~~~RvWDlRtgr-------------~im~L-------~ 342 (459)
T KOG0272|consen 297 -------------LLQEGHSKGVFSIAFQPD-GSLAATGGLDSLGRVWDLRTGR-------------CIMFL-------A 342 (459)
T ss_pred -------------HhhcccccccceeEecCC-CceeeccCccchhheeecccCc-------------EEEEe-------c
Confidence 223367889999999998 7899999999999999999984 44443 4
Q ss_pred CCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEecc
Q 005502 276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP 331 (693)
Q Consensus 276 ~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p 331 (693)
+|.. +|.+|.|+|+|..|++|+.|++++|||++.......+..|...+..++|+|
T Consensus 343 gH~k-~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p 397 (459)
T KOG0272|consen 343 GHIK-EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSP 397 (459)
T ss_pred cccc-ceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecc
Confidence 4554 699999999999999999999999999999777666677777788888888
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5.6e-31 Score=262.38 Aligned_cols=262 Identities=21% Similarity=0.260 Sum_probs=209.5
Q ss_pred cceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 005502 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (693)
Q Consensus 41 ~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~ 120 (693)
.+...+.||.++|.|++|+|+|..||||+.|.++++||+.+..++.+. .+|...|.||+|+|+ +..||+|+.||+|+
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~-KgH~~WVlcvawsPD--gk~iASG~~dg~I~ 182 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTC-KGHKNWVLCVAWSPD--GKKIASGSKDGSIR 182 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceee-cCCccEEEEEEECCC--cchhhccccCCeEE
Confidence 345667899999999999999999999999999999999999999998 799999999999999 79999999999999
Q ss_pred EEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecC----CCcEEEEEeCCCcEEEEeCCCCCCCC------------
Q 005502 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG----NPHVVWSASEDGTLRQHDFRQGSSCP------------ 184 (693)
Q Consensus 121 vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~----~~~~l~Sgs~Dg~V~iwDlr~~~~~~------------ 184 (693)
+||..++. .....+.+|...|++|+|.|- ...+|++++.||.|+|||+..+....
T Consensus 183 lwdpktg~---------~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCv 253 (480)
T KOG0271|consen 183 LWDPKTGQ---------QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCV 253 (480)
T ss_pred EecCCCCC---------cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEE
Confidence 99998753 346778899999999999872 34589999999999999998754321
Q ss_pred ------CCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEc-----------C----------------------
Q 005502 185 ------PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS-----------S---------------------- 225 (693)
Q Consensus 185 ------~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~s-----------p---------------------- 225 (693)
.+.++..++...+|+...|. ......+|...|+.++.+ |
T Consensus 254 rwGG~gliySgS~DrtIkvw~a~dG~--~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~ 331 (480)
T KOG0271|consen 254 RWGGEGLIYSGSQDRTIKVWRALDGK--LCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAV 331 (480)
T ss_pred EEcCCceEEecCCCceEEEEEccchh--HHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHh
Confidence 11223344445555544432 334556777888888877 2
Q ss_pred --CCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcE
Q 005502 226 --TRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHV 303 (693)
Q Consensus 226 --~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V 303 (693)
+.+..|++|+.|.++.+|+....+ .++..+ .+|.. -|+.+.||||++++++++-|..|
T Consensus 332 ~~~~~erlVSgsDd~tlflW~p~~~k------------kpi~rm-------tgHq~-lVn~V~fSPd~r~IASaSFDkSV 391 (480)
T KOG0271|consen 332 LKDSGERLVSGSDDFTLFLWNPFKSK------------KPITRM-------TGHQA-LVNHVSFSPDGRYIASASFDKSV 391 (480)
T ss_pred hccCcceeEEecCCceEEEecccccc------------cchhhh-------hchhh-heeeEEECCCccEEEEeecccce
Confidence 123469999999999999976443 122222 45655 49999999999999999999999
Q ss_pred EEEECCCCCcceEEeecCCCceeEEeccCCCcc
Q 005502 304 YLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGL 336 (693)
Q Consensus 304 ~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~g~ 336 (693)
+|||..+++....+-.|-.++-.++|+.+..-+
T Consensus 392 kLW~g~tGk~lasfRGHv~~VYqvawsaDsRLl 424 (480)
T KOG0271|consen 392 KLWDGRTGKFLASFRGHVAAVYQVAWSADSRLL 424 (480)
T ss_pred eeeeCCCcchhhhhhhccceeEEEEeccCccEE
Confidence 999999998777777777788888888875544
No 7
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=5.1e-31 Score=285.20 Aligned_cols=213 Identities=22% Similarity=0.329 Sum_probs=191.1
Q ss_pred cccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 005502 39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 118 (693)
Q Consensus 39 ~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~ 118 (693)
.....++|.||+++|....|+|+.++|+++|.|++|++|.+.+..++... .||..+|+++.|+|. |.+||||+.|++
T Consensus 440 ~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y-~GH~~PVwdV~F~P~--GyYFatas~D~t 516 (707)
T KOG0263|consen 440 SSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIY-KGHLAPVWDVQFAPR--GYYFATASHDQT 516 (707)
T ss_pred CCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEe-cCCCcceeeEEecCC--ceEEEecCCCce
Confidence 34456679999999999999999999999999999999999999999888 699999999999999 799999999999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEE
Q 005502 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (693)
Q Consensus 119 V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~ 198 (693)
-++|..... .|.+.+.+|...|.|+.|+| +.++++|||.|.+||+||+.++..+
T Consensus 517 ArLWs~d~~----------~PlRifaghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~V--------------- 570 (707)
T KOG0263|consen 517 ARLWSTDHN----------KPLRIFAGHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNSV--------------- 570 (707)
T ss_pred eeeeecccC----------CchhhhcccccccceEEECC-cccccccCCCCceEEEEEcCCCcEE---------------
Confidence 999999864 78999999999999999999 8899999999999999999987622
Q ss_pred eccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCC
Q 005502 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (693)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 278 (693)
..+.+|..+|.+++|||. |.+|++|+.||.|.+||+.++.++..+ .+|.
T Consensus 571 ----------RiF~GH~~~V~al~~Sp~-Gr~LaSg~ed~~I~iWDl~~~~~v~~l--------------------~~Ht 619 (707)
T KOG0263|consen 571 ----------RIFTGHKGPVTALAFSPC-GRYLASGDEDGLIKIWDLANGSLVKQL--------------------KGHT 619 (707)
T ss_pred ----------EEecCCCCceEEEEEcCC-CceEeecccCCcEEEEEcCCCcchhhh--------------------hccc
Confidence 222468899999999996 899999999999999999988655433 4564
Q ss_pred ccceEEEEEcCCCCEEEEEecCCcEEEEECCCCC
Q 005502 279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 279 ~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~ 312 (693)
+ .|.+|.||.+|..|++|+.|.+|++||+....
T Consensus 620 ~-ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 620 G-TIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred C-ceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 4 69999999999999999999999999998743
No 8
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=4.8e-30 Score=248.22 Aligned_cols=238 Identities=20% Similarity=0.350 Sum_probs=197.7
Q ss_pred ccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEec------------------------------
Q 005502 40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE------------------------------ 89 (693)
Q Consensus 40 l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~------------------------------ 89 (693)
++..++|+||.+.|.++.|+++.++|+|+|.||.+.|||..+...++.+.
T Consensus 45 ~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 45 MRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIY 124 (343)
T ss_pred eeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEE
Confidence 34468999999999999999999999999999999999987644333321
Q ss_pred -----------------cCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEE
Q 005502 90 -----------------TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKK 152 (693)
Q Consensus 90 -----------------~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 152 (693)
.+|++-+.|+.|.++ ..|+|++.|.++.+||++++ ..+..|.+|...|.+
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD---~~ilT~SGD~TCalWDie~g----------~~~~~f~GH~gDV~s 191 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD---NHILTGSGDMTCALWDIETG----------QQTQVFHGHTGDVMS 191 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcCC---CceEecCCCceEEEEEcccc----------eEEEEecCCcccEEE
Confidence 577777788888775 57788888888888888865 568899999999999
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEE
Q 005502 153 LAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLL 232 (693)
Q Consensus 153 l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~La 232 (693)
|+++|.+++.|+||+.|+..++||+|.+.. +..+++|...|+++.|.|+ +.-|+
T Consensus 192 lsl~p~~~ntFvSg~cD~~aklWD~R~~~c-------------------------~qtF~ghesDINsv~ffP~-G~afa 245 (343)
T KOG0286|consen 192 LSLSPSDGNTFVSGGCDKSAKLWDVRSGQC-------------------------VQTFEGHESDINSVRFFPS-GDAFA 245 (343)
T ss_pred EecCCCCCCeEEecccccceeeeeccCcce-------------------------eEeecccccccceEEEccC-CCeee
Confidence 999998999999999999999999998752 3445578889999999997 78999
Q ss_pred EEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCC
Q 005502 233 VGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 233 tgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~ 312 (693)
+|+.|++.|+||+|..+.+..+.. . ....+|++|+||..|++|++|+.|..+.+||.-.++
T Consensus 246 tGSDD~tcRlyDlRaD~~~a~ys~-------------~------~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e 306 (343)
T KOG0286|consen 246 TGSDDATCRLYDLRADQELAVYSH-------------D------SIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGE 306 (343)
T ss_pred ecCCCceeEEEeecCCcEEeeecc-------------C------cccCCceeEEEcccccEEEeeecCCceeEeeccccc
Confidence 999999999999998765443321 1 122369999999999999999999999999999988
Q ss_pred cceEEeecCCCceeEEeccCCCc
Q 005502 313 GRAMRYTVGDASKIMSFTPTLNG 335 (693)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~p~~~g 335 (693)
....+..|+..+..+..+|+.--
T Consensus 307 ~vg~L~GHeNRvScl~~s~DG~a 329 (343)
T KOG0286|consen 307 RVGVLAGHENRVSCLGVSPDGMA 329 (343)
T ss_pred eEEEeeccCCeeEEEEECCCCcE
Confidence 88888887777777777776433
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.96 E-value=2.1e-27 Score=228.75 Aligned_cols=242 Identities=21% Similarity=0.276 Sum_probs=199.6
Q ss_pred cccceEEeccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEECCC-----CcEEEEeccCCCcceEEEEEeeCCCCCEEEE
Q 005502 39 RLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSS-----RKLLHSIETGHSANVFCTKFVPETSDELVVS 112 (693)
Q Consensus 39 ~l~~~~~l~gH~~~V~~l~~s~~-g~~LaSgs~Dg~I~IWd~~~-----~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~s 112 (693)
.+.+..+|+||++.|+.++..+. ...|++++.|.+|.+|++.. |..++.+ .||...|..+..+++ +++.++
T Consensus 4 ~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~-~GHsH~v~dv~~s~d--g~~alS 80 (315)
T KOG0279|consen 4 QLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRL-TGHSHFVSDVVLSSD--GNFALS 80 (315)
T ss_pred hheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeee-eccceEecceEEccC--CceEEe
Confidence 45567789999999999999986 57899999999999998863 5567777 799999999999999 699999
Q ss_pred EeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcc
Q 005502 113 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE 192 (693)
Q Consensus 113 gs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~ 192 (693)
++.|+++++||+..+ ++...|.+|...|.+++|+| +...|+||+.|.+|++|++-.....
T Consensus 81 ~swD~~lrlWDl~~g----------~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~--------- 140 (315)
T KOG0279|consen 81 ASWDGTLRLWDLATG----------ESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKY--------- 140 (315)
T ss_pred ccccceEEEEEecCC----------cEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecccEEE---------
Confidence 999999999999975 56888999999999999999 5678889999999999998654211
Q ss_pred cceEEEeccCCceeeecCCCCCccceEEEEEcCCC-CcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCc
Q 005502 193 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 271 (693)
Q Consensus 193 ~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~-~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (693)
.+ .. ..+...|+|+.|+|.. .-+|++++.|++|++||+++.+....+
T Consensus 141 ---t~-----------~~-~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~----------------- 188 (315)
T KOG0279|consen 141 ---TI-----------HE-DSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTF----------------- 188 (315)
T ss_pred ---EE-----------ec-CCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcc-----------------
Confidence 11 11 1125689999999974 458999999999999999986533222
Q ss_pred cccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCcccccC
Q 005502 272 LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQP 340 (693)
Q Consensus 272 ~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~ 340 (693)
.+|.+ .++.+++||||..+++|+.||.++|||++.++. ...+.+..++..++|+|..--+....
T Consensus 189 ---~gh~~-~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~-lysl~a~~~v~sl~fspnrywL~~at 252 (315)
T KOG0279|consen 189 ---IGHSG-YVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN-LYSLEAFDIVNSLCFSPNRYWLCAAT 252 (315)
T ss_pred ---ccccc-cEEEEEECCCCCEEecCCCCceEEEEEccCCce-eEeccCCCeEeeEEecCCceeEeecc
Confidence 34555 599999999999999999999999999999664 55666778899999999865554443
No 10
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.96 E-value=1.8e-27 Score=229.26 Aligned_cols=214 Identities=20% Similarity=0.257 Sum_probs=179.5
Q ss_pred hhccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeC
Q 005502 36 LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG 115 (693)
Q Consensus 36 ~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~ 115 (693)
....+.+.+.|+||+..|+.+..+++|++.+|+|.|+++++||+.+++..+.| .+|...|.+++|+|+ +..++||+.
T Consensus 49 d~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f-~GH~~dVlsva~s~d--n~qivSGSr 125 (315)
T KOG0279|consen 49 DIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRF-VGHTKDVLSVAFSTD--NRQIVSGSR 125 (315)
T ss_pred ccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEE-EecCCceEEEEecCC--CceeecCCC
Confidence 34556678899999999999999999999999999999999999999988888 799999999999999 599999999
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCCceeeccC--CCCeEEEEEecCC-CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcc
Q 005502 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCH--TRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE 192 (693)
Q Consensus 116 Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h--~~~V~~l~~sp~~-~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~ 192 (693)
|.+|++|++.. .+..+...+ ..-|.++.|+|.. .-+|++++.|++|++||+++.+.
T Consensus 126 DkTiklwnt~g-----------~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l---------- 184 (315)
T KOG0279|consen 126 DKTIKLWNTLG-----------VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL---------- 184 (315)
T ss_pred cceeeeeeecc-----------cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch----------
Confidence 99999999975 233444433 6789999999964 56889999999999999998652
Q ss_pred cceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCcc
Q 005502 193 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL 272 (693)
Q Consensus 193 ~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (693)
...+.+|...++.+++||+ |.++++|+.||.+.+||++..+.+.++
T Consensus 185 ---------------~~~~~gh~~~v~t~~vSpD-GslcasGgkdg~~~LwdL~~~k~lysl------------------ 230 (315)
T KOG0279|consen 185 ---------------RTTFIGHSGYVNTVTVSPD-GSLCASGGKDGEAMLWDLNEGKNLYSL------------------ 230 (315)
T ss_pred ---------------hhccccccccEEEEEECCC-CCEEecCCCCceEEEEEccCCceeEec------------------
Confidence 2334568889999999998 789999999999999999987543222
Q ss_pred ccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCC
Q 005502 273 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 273 ~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~ 312 (693)
.+.. .|.+++|+|+...|+.+. +..|+|||+.++.
T Consensus 231 ---~a~~-~v~sl~fspnrywL~~at-~~sIkIwdl~~~~ 265 (315)
T KOG0279|consen 231 ---EAFD-IVNSLCFSPNRYWLCAAT-ATSIKIWDLESKA 265 (315)
T ss_pred ---cCCC-eEeeEEecCCceeEeecc-CCceEEEeccchh
Confidence 1222 599999999987766654 4559999999954
No 11
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=1.3e-25 Score=240.83 Aligned_cols=252 Identities=17% Similarity=0.239 Sum_probs=190.2
Q ss_pred cccccchhhhccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCC
Q 005502 28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSD 107 (693)
Q Consensus 28 ~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~ 107 (693)
.++-+|......+ +...+||...++|++++|||+++|||++||+|+|||..++-|..++ ..|++.|+.++|+.. +
T Consensus 330 gQLlVweWqsEsY--VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTF-teHts~Vt~v~f~~~--g 404 (893)
T KOG0291|consen 330 GQLLVWEWQSESY--VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTF-TEHTSGVTAVQFTAR--G 404 (893)
T ss_pred ceEEEEEeeccce--eeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEe-ccCCCceEEEEEEec--C
Confidence 3555665444432 5557899999999999999999999999999999999999999999 899999999999998 7
Q ss_pred CEEEEEeCCCcEEEEEcCCCCC---------CCC-------------------------CCCCCCCceeeccCCCCeEEE
Q 005502 108 ELVVSGAGDAEVRLFNLSRFSG---------RGL-------------------------DDNAITPSALYQCHTRRVKKL 153 (693)
Q Consensus 108 ~~l~sgs~Dg~V~vwdl~~~~~---------~~~-------------------------~~~~~~~~~~~~~h~~~V~~l 153 (693)
+.+++.+.||+|+.||+..-.. ... .....+.+-.+.+|.++|.++
T Consensus 405 ~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l 484 (893)
T KOG0291|consen 405 NVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGL 484 (893)
T ss_pred CEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceee
Confidence 9999999999999999974210 000 111223445678999999999
Q ss_pred EEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEE
Q 005502 154 AVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV 233 (693)
Q Consensus 154 ~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Lat 233 (693)
+|+| .+..|+|+|.|.+||+||+-..... ...+ .....+..++|.|+ |..|++
T Consensus 485 ~f~~-~~~~LaS~SWDkTVRiW~if~s~~~---------------------vEtl----~i~sdvl~vsfrPd-G~elaV 537 (893)
T KOG0291|consen 485 SFSP-DGSLLASGSWDKTVRIWDIFSSSGT---------------------VETL----EIRSDVLAVSFRPD-GKELAV 537 (893)
T ss_pred EEcc-ccCeEEeccccceEEEEEeeccCce---------------------eeeE----eeccceeEEEEcCC-CCeEEE
Confidence 9999 6789999999999999998654211 0001 12346789999998 789999
Q ss_pred EeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCC
Q 005502 234 GGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 234 gs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~ 312 (693)
+..||.|.+||.....++.++........ -+.........+...+..++.+++|+||..|++|+....|.||++.++-
T Consensus 538 aTldgqItf~d~~~~~q~~~IdgrkD~~~-gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~v 615 (893)
T KOG0291|consen 538 ATLDGQITFFDIKEAVQVGSIDGRKDLSG-GRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGV 615 (893)
T ss_pred EEecceEEEEEhhhceeeccccchhhccc-cccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhh
Confidence 99999999999988776655533211000 0000001111122233469999999999999999999999999999854
No 12
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.95 E-value=1.6e-26 Score=219.22 Aligned_cols=245 Identities=16% Similarity=0.252 Sum_probs=194.6
Q ss_pred CcccccchhhhccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCC
Q 005502 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS 106 (693)
Q Consensus 27 ~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~ 106 (693)
.+.+++++....+..++.++.+|++.|+++.|..+|+.++|||+||+++|||+....+.+.+ .|.++|++|..+|+.
T Consensus 60 ~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~--~~~spVn~vvlhpnQ- 136 (311)
T KOG0315|consen 60 NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY--QHNSPVNTVVLHPNQ- 136 (311)
T ss_pred CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhc--cCCCCcceEEecCCc-
Confidence 37788888777777899999999999999999999999999999999999999986666666 588999999999995
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCC
Q 005502 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA 186 (693)
Q Consensus 107 ~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~ 186 (693)
..|++|..+|.|+|||+...... ......-...|.++.+.| ++.+++.+..-|.+.+|++-.....
T Consensus 137 -teLis~dqsg~irvWDl~~~~c~---------~~liPe~~~~i~sl~v~~-dgsml~a~nnkG~cyvW~l~~~~~~--- 202 (311)
T KOG0315|consen 137 -TELISGDQSGNIRVWDLGENSCT---------HELIPEDDTSIQSLTVMP-DGSMLAAANNKGNCYVWRLLNHQTA--- 202 (311)
T ss_pred -ceEEeecCCCcEEEEEccCCccc---------cccCCCCCcceeeEEEcC-CCcEEEEecCCccEEEEEccCCCcc---
Confidence 78999999999999999965211 111122346899999999 7788888999999999998764322
Q ss_pred CCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccc
Q 005502 187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266 (693)
Q Consensus 187 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~ 266 (693)
....++...+.|...+..+-+||+ +++||+++.|.+|+||+.... +.
T Consensus 203 ----------------s~l~P~~k~~ah~~~il~C~lSPd-~k~lat~ssdktv~iwn~~~~--~k-------------- 249 (311)
T KOG0315|consen 203 ----------------SELEPVHKFQAHNGHILRCLLSPD-VKYLATCSSDKTVKIWNTDDF--FK-------------- 249 (311)
T ss_pred ----------------ccceEhhheecccceEEEEEECCC-CcEEEeecCCceEEEEecCCc--ee--------------
Confidence 112234445677888999999997 799999999999999998864 00
Q ss_pred cccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCce
Q 005502 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASK 325 (693)
Q Consensus 267 ~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~ 325 (693)
..+...+|.. +++.++||.+|+||++++.|+++++||+..++.....-.+..+..
T Consensus 250 ---le~~l~gh~r-WvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~v 304 (311)
T KOG0315|consen 250 ---LELVLTGHQR-WVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAV 304 (311)
T ss_pred ---eEEEeecCCc-eEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccE
Confidence 0111134443 899999999999999999999999999999765554444433333
No 13
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.95 E-value=3.9e-27 Score=255.15 Aligned_cols=242 Identities=20% Similarity=0.264 Sum_probs=202.9
Q ss_pred eEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCc-------------------------------EEEEeccC
Q 005502 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-------------------------------LLHSIETG 91 (693)
Q Consensus 43 ~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~-------------------------------~~~~l~~~ 91 (693)
..++..-...|+|..|++++++||.|-.|..|++|.+...+ ...++ .|
T Consensus 371 ~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L-~G 449 (707)
T KOG0263|consen 371 MYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTL-YG 449 (707)
T ss_pred EEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEe-ec
Confidence 34444445679999999999999999999999999987311 11223 69
Q ss_pred CCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCc
Q 005502 92 HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT 171 (693)
Q Consensus 92 h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~ 171 (693)
|.++|+++.|+|+ .++|++|+.|++||+|.+.+. ..+..+++|..+|..+.|+| -+.+|+|+|.|++
T Consensus 450 H~GPVyg~sFsPd--~rfLlScSED~svRLWsl~t~----------s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~t 516 (707)
T KOG0263|consen 450 HSGPVYGCSFSPD--RRFLLSCSEDSSVRLWSLDTW----------SCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQT 516 (707)
T ss_pred CCCceeeeeeccc--ccceeeccCCcceeeeecccc----------eeEEEecCCCcceeeEEecC-CceEEEecCCCce
Confidence 9999999999999 599999999999999999975 56888999999999999999 7899999999999
Q ss_pred EEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCC
Q 005502 172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL 251 (693)
Q Consensus 172 V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~ 251 (693)
-++|......+ +....+|...|.|+.|+|+ .+++++|+.|.+||+||..++.
T Consensus 517 ArLWs~d~~~P-------------------------lRifaghlsDV~cv~FHPN-s~Y~aTGSsD~tVRlWDv~~G~-- 568 (707)
T KOG0263|consen 517 ARLWSTDHNKP-------------------------LRIFAGHLSDVDCVSFHPN-SNYVATGSSDRTVRLWDVSTGN-- 568 (707)
T ss_pred eeeeecccCCc-------------------------hhhhcccccccceEEECCc-ccccccCCCCceEEEEEcCCCc--
Confidence 99999876442 2333467788999999997 7999999999999999999874
Q ss_pred cccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEecc
Q 005502 252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP 331 (693)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p 331 (693)
+++.| .||.. +|++|+|||+|++|++|+.||.|.+||+.++........+...+..+.|+.
T Consensus 569 -----------~VRiF-------~GH~~-~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~ 629 (707)
T KOG0263|consen 569 -----------SVRIF-------TGHKG-PVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSR 629 (707)
T ss_pred -----------EEEEe-------cCCCC-ceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEec
Confidence 45555 55666 799999999999999999999999999999888888888888888899988
Q ss_pred CCCcccccCCcccc
Q 005502 332 TLNGLELQPPIHDF 345 (693)
Q Consensus 332 ~~~g~~~~~~~~~~ 345 (693)
+.+-++.......+
T Consensus 630 dg~vLasgg~DnsV 643 (707)
T KOG0263|consen 630 DGNVLASGGADNSV 643 (707)
T ss_pred CCCEEEecCCCCeE
Confidence 87766555444333
No 14
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.8e-27 Score=235.24 Aligned_cols=246 Identities=19% Similarity=0.286 Sum_probs=206.6
Q ss_pred CcccccchhhhccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC-CcEEEEeccCCCcceEEEEEeeCC
Q 005502 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS-RKLLHSIETGHSANVFCTKFVPET 105 (693)
Q Consensus 27 ~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~-~~~~~~l~~~h~~~I~sl~f~p~~ 105 (693)
+.++++|+... .+++..|+||++.|..|.|+..|++||+++.|-.+++||..+ .++++.+ .+|.-.|.+++|.|.
T Consensus 129 d~tikv~D~~t--g~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~-~gh~h~vS~V~f~P~- 204 (406)
T KOG0295|consen 129 DATIKVFDTET--GELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSL-IGHEHGVSSVFFLPL- 204 (406)
T ss_pred CceEEEEEccc--hhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHh-cCcccceeeEEEEec-
Confidence 56777776554 445999999999999999999999999999999999999987 4566666 799999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCC
Q 005502 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP 185 (693)
Q Consensus 106 ~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~ 185 (693)
|.+|++++.|.+|+.|++.++ .++.++.+|..-|..+..+. ++.+|++++.|.+|++|-+.+.+..
T Consensus 205 -gd~ilS~srD~tik~We~~tg----------~cv~t~~~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t~~~k-- 270 (406)
T KOG0295|consen 205 -GDHILSCSRDNTIKAWECDTG----------YCVKTFPGHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVATKQCK-- 270 (406)
T ss_pred -CCeeeecccccceeEEecccc----------eeEEeccCchHhEEEEEecC-CeeEEEecCCCceEEEEEeccchhh--
Confidence 689999999999999999976 67999999999999999998 7899999999999999998876421
Q ss_pred CCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCC--------------CCcEEEEEeCCCcEEEEecCCCCCC
Q 005502 186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST--------------RPHLLLVGGSDAFARLYDRRMLPPL 251 (693)
Q Consensus 186 ~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~--------------~~~~Latgs~Dg~I~lwD~r~~~~~ 251 (693)
.....|..+|.|++|-|. ++.++++++.|++|++||+.++
T Consensus 271 -----------------------~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg--- 324 (406)
T KOG0295|consen 271 -----------------------AELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG--- 324 (406)
T ss_pred -----------------------hhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC---
Confidence 112244556666666542 3469999999999999999986
Q ss_pred cccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEecc
Q 005502 252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP 331 (693)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p 331 (693)
.|+-++ .+|.+ +|..++|+|.|+||+++..|+++++||+++..+......+.+-...+.|+.
T Consensus 325 ----------~cL~tL-------~ghdn-wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~ 386 (406)
T KOG0295|consen 325 ----------MCLFTL-------VGHDN-WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHK 386 (406)
T ss_pred ----------eEEEEE-------ecccc-eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCC
Confidence 444444 55666 899999999999999999999999999999888888888778777777776
Q ss_pred CCC
Q 005502 332 TLN 334 (693)
Q Consensus 332 ~~~ 334 (693)
+..
T Consensus 387 ~~p 389 (406)
T KOG0295|consen 387 TAP 389 (406)
T ss_pred CCc
Confidence 543
No 15
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.95 E-value=1.2e-26 Score=225.69 Aligned_cols=265 Identities=23% Similarity=0.274 Sum_probs=207.8
Q ss_pred ceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC-cEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 005502 42 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (693)
Q Consensus 42 ~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~-~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~ 120 (693)
++..+.||.+.|+.+.|+|+|.+||||+.|..|.+|++... +-..++ .+|.+.|..+.|.++ ++.|++++.|.+|+
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~l-kgHsgAVM~l~~~~d--~s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVL-KGHSGAVMELHGMRD--GSHILSCGTDKTVR 115 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeee-ccccceeEeeeeccC--CCEEEEecCCceEE
Confidence 45667899999999999999999999999999999996533 333445 699999999999999 69999999999999
Q ss_pred EEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCC---------------
Q 005502 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP--------------- 185 (693)
Q Consensus 121 vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~--------------- 185 (693)
.||++++ +.+..++.|..-|..+.....++.++.|++.||++++||+|+......
T Consensus 116 ~wD~~tG----------~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~ 185 (338)
T KOG0265|consen 116 GWDAETG----------KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDT 185 (338)
T ss_pred EEecccc----------eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEeccc
Confidence 9999976 568888999999999997777888999999999999999996543211
Q ss_pred ---CCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCC
Q 005502 186 ---AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP 262 (693)
Q Consensus 186 ---~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~ 262 (693)
..++..+....+|+++.+.. +....+|...|+.+..+|. +..+.+-+.|.+|++||+|-..+- .+
T Consensus 186 s~qv~sggIdn~ikvWd~r~~d~--~~~lsGh~DtIt~lsls~~-gs~llsnsMd~tvrvwd~rp~~p~---------~R 253 (338)
T KOG0265|consen 186 SDQVISGGIDNDIKVWDLRKNDG--LYTLSGHADTITGLSLSRY-GSFLLSNSMDNTVRVWDVRPFAPS---------QR 253 (338)
T ss_pred ccceeeccccCceeeeccccCcc--eEEeecccCceeeEEeccC-CCccccccccceEEEEEecccCCC---------Cc
Confidence 11111222346777776653 3445678889999999997 789999999999999999965432 25
Q ss_pred cccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCc
Q 005502 263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNG 335 (693)
Q Consensus 263 ~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~g 335 (693)
|+..|....... ......++|+|+++.+.+|+.|..||+||..+.........+...+..+.|+|...-
T Consensus 254 ~v~if~g~~hnf----eknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~i 322 (338)
T KOG0265|consen 254 CVKIFQGHIHNF----EKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPI 322 (338)
T ss_pred eEEEeecchhhh----hhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcE
Confidence 566553211111 113578899999999999999999999999986555555555667778889987543
No 16
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.95 E-value=1.4e-26 Score=224.27 Aligned_cols=224 Identities=17% Similarity=0.291 Sum_probs=189.5
Q ss_pred CcCcccccchhhhc----cccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEE
Q 005502 25 DVNHSLQMHSSLVR----RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 100 (693)
Q Consensus 25 ~~~~~l~~~~~~i~----~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~ 100 (693)
..++...+++...+ .....++|.||++-+.|+.|-+|+ .|+|+|.|.+..+||+++++.+..+ .+|.+.|.++.
T Consensus 116 GLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f-~GH~gDV~sls 193 (343)
T KOG0286|consen 116 GLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVF-HGHTGDVMSLS 193 (343)
T ss_pred CcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEe-cCCcccEEEEe
Confidence 45566666655433 234567899999999999999865 5889999999999999999999999 89999999999
Q ss_pred EeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 005502 101 FVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180 (693)
Q Consensus 101 f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~ 180 (693)
+.|.. ++.|++|+.|+..++||++.+ ..+++|.+|...|+++.|.| ++.-|+||++|+++|+||+|..
T Consensus 194 l~p~~-~ntFvSg~cD~~aklWD~R~~----------~c~qtF~ghesDINsv~ffP-~G~afatGSDD~tcRlyDlRaD 261 (343)
T KOG0286|consen 194 LSPSD-GNTFVSGGCDKSAKLWDVRSG----------QCVQTFEGHESDINSVRFFP-SGDAFATGSDDATCRLYDLRAD 261 (343)
T ss_pred cCCCC-CCeEEecccccceeeeeccCc----------ceeEeecccccccceEEEcc-CCCeeeecCCCceeEEEeecCC
Confidence 99953 799999999999999999975 56899999999999999999 7789999999999999999987
Q ss_pred CCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCC
Q 005502 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP 260 (693)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~ 260 (693)
+.. .+........+|++++||.. |++|.+|..|..+.+||.-..+.+..+
T Consensus 262 ~~~-----------------------a~ys~~~~~~gitSv~FS~S-GRlLfagy~d~~c~vWDtlk~e~vg~L------ 311 (343)
T KOG0286|consen 262 QEL-----------------------AVYSHDSIICGITSVAFSKS-GRLLFAGYDDFTCNVWDTLKGERVGVL------ 311 (343)
T ss_pred cEE-----------------------eeeccCcccCCceeEEEccc-ccEEEeeecCCceeEeeccccceEEEe------
Confidence 632 12223344568999999997 799999999999999998765433211
Q ss_pred CCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEE
Q 005502 261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMD 307 (693)
Q Consensus 261 ~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwD 307 (693)
.||.+ .|++|..+|||.-|++|+-|.+++||.
T Consensus 312 --------------~GHeN-RvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 312 --------------AGHEN-RVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred --------------eccCC-eeEEEEECCCCcEEEecchhHheeecC
Confidence 45776 699999999999999999999999994
No 17
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.95 E-value=8.4e-28 Score=241.88 Aligned_cols=237 Identities=19% Similarity=0.284 Sum_probs=193.6
Q ss_pred cccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 005502 39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 118 (693)
Q Consensus 39 ~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~ 118 (693)
.+..+..++.|..+|.++.|+++|.+++||+.+|.|++|+.. ...++.+...|...|.+++|+|+ +..|+||+.||+
T Consensus 127 ~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn-mnnVk~~~ahh~eaIRdlafSpn--DskF~t~SdDg~ 203 (464)
T KOG0284|consen 127 SFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN-MNNVKIIQAHHAEAIRDLAFSPN--DSKFLTCSDDGT 203 (464)
T ss_pred eeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc-hhhhHHhhHhhhhhhheeccCCC--CceeEEecCCCe
Confidence 344455678999999999999999999999999999999975 45566664556699999999997 799999999999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEE
Q 005502 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (693)
Q Consensus 119 V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~ 198 (693)
|+|||.... +....+.+|.-.|++++|+| ...+|+++|.|..|++||.+++..
T Consensus 204 ikiWdf~~~----------kee~vL~GHgwdVksvdWHP-~kgLiasgskDnlVKlWDprSg~c---------------- 256 (464)
T KOG0284|consen 204 IKIWDFRMP----------KEERVLRGHGWDVKSVDWHP-TKGLIASGSKDNLVKLWDPRSGSC---------------- 256 (464)
T ss_pred EEEEeccCC----------chhheeccCCCCcceeccCC-ccceeEEccCCceeEeecCCCcch----------------
Confidence 999999975 44566789999999999999 557999999999999999999863
Q ss_pred eccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCC
Q 005502 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (693)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 278 (693)
+.....|...|..+.|+|+ +++|++++.|..+++||+|+.+.+..+ ++|.
T Consensus 257 ---------l~tlh~HKntVl~~~f~~n-~N~Llt~skD~~~kv~DiR~mkEl~~~--------------------r~Hk 306 (464)
T KOG0284|consen 257 ---------LATLHGHKNTVLAVKFNPN-GNWLLTGSKDQSCKVFDIRTMKELFTY--------------------RGHK 306 (464)
T ss_pred ---------hhhhhhccceEEEEEEcCC-CCeeEEccCCceEEEEehhHhHHHHHh--------------------hcch
Confidence 3334467778999999998 599999999999999999976544333 4565
Q ss_pred ccceEEEEEcCCCC-EEEEEecCCcEEEEECCC-CCcceEEeecCCCceeEEeccCCCcc
Q 005502 279 SLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNH-AGGRAMRYTVGDASKIMSFTPTLNGL 336 (693)
Q Consensus 279 ~~~V~~v~fspdg~-~L~sgs~Dg~V~lwDl~~-~~~~~~~~~~~~~~~~~~~~p~~~g~ 336 (693)
. .|++++|+|-.. .|.+|+.||.|..|.+.. ......-+.+...+..++|+|-..-+
T Consensus 307 k-dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil 365 (464)
T KOG0284|consen 307 K-DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHIL 365 (464)
T ss_pred h-hheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeE
Confidence 5 599999999654 666778899999999983 22334445666678888899865443
No 18
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.95 E-value=1.6e-25 Score=212.44 Aligned_cols=255 Identities=15% Similarity=0.212 Sum_probs=197.3
Q ss_pred CCcCcccccchhhhccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCc--EEEEeccCCCcceEEEEE
Q 005502 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKF 101 (693)
Q Consensus 24 ~~~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~--~~~~l~~~h~~~I~sl~f 101 (693)
..+++++++|. ..++.+..+++...+.||.|+..|+++.||+++. ..|++||+.+++ ++.++ .+|..+|++|.|
T Consensus 16 A~YDhTIRfWq--a~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~-e~h~kNVtaVgF 91 (311)
T KOG0315|consen 16 AGYDHTIRFWQ--ALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATF-EGHTKNVTAVGF 91 (311)
T ss_pred ccCcceeeeee--hhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEE-eccCCceEEEEE
Confidence 55778888876 5577899999988899999999999999999987 589999999875 57777 799999999999
Q ss_pred eeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCC
Q 005502 102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS 181 (693)
Q Consensus 102 ~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~ 181 (693)
..+ |+.++||+.||+++|||++.. .+.+.+ .|..+|+++..+| +..-|++|..+|.|++||+++..
T Consensus 92 ~~d--grWMyTgseDgt~kIWdlR~~----------~~qR~~-~~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~ 157 (311)
T KOG0315|consen 92 QCD--GRWMYTGSEDGTVKIWDLRSL----------SCQRNY-QHNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENS 157 (311)
T ss_pred eec--CeEEEecCCCceEEEEeccCc----------ccchhc-cCCCCcceEEecC-CcceEEeecCCCcEEEEEccCCc
Confidence 998 799999999999999999964 223344 4789999999999 44566699999999999998764
Q ss_pred CCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCC
Q 005502 182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP 261 (693)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~ 261 (693)
... ...|.....|.++++.|+ +.+|+.+.+.|..++|++-.......+
T Consensus 158 c~~------------------------~liPe~~~~i~sl~v~~d-gsml~a~nnkG~cyvW~l~~~~~~s~l------- 205 (311)
T KOG0315|consen 158 CTH------------------------ELIPEDDTSIQSLTVMPD-GSMLAAANNKGNCYVWRLLNHQTASEL------- 205 (311)
T ss_pred ccc------------------------ccCCCCCcceeeEEEcCC-CcEEEEecCCccEEEEEccCCCccccc-------
Confidence 221 112233468999999998 789999999999999998764322211
Q ss_pred CcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCC-CcceEEeecCCCceeEEeccCCCcc
Q 005502 262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA-GGRAMRYTVGDASKIMSFTPTLNGL 336 (693)
Q Consensus 262 ~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~-~~~~~~~~~~~~~~~~~~~p~~~g~ 336 (693)
..+..| +.|.. .++.+.+||++++|++++.|.+|+||++.+- +....+..+..-.-..+|+.+..-+
T Consensus 206 ~P~~k~-------~ah~~-~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~Yl 273 (311)
T KOG0315|consen 206 EPVHKF-------QAHNG-HILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYL 273 (311)
T ss_pred eEhhhe-------ecccc-eEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEE
Confidence 112222 33544 6999999999999999999999999999986 3333333333344555666655444
No 19
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=5.5e-26 Score=213.85 Aligned_cols=259 Identities=20% Similarity=0.261 Sum_probs=204.1
Q ss_pred eEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 005502 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (693)
Q Consensus 43 ~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vw 122 (693)
.+.|.+|.++|+.+.|+-+|++.++++.|++|++|++..+.++++. .+|...|..++.+.+ +..|++|+.|..|.+|
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktY-sghG~EVlD~~~s~D--nskf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTY-SGHGHEVLDAALSSD--NSKFASCGGDKAVQVW 86 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeee-cCCCceeeecccccc--ccccccCCCCceEEEE
Confidence 5678899999999999999999999999999999999999999999 899999999999888 5899999999999999
Q ss_pred EcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCC---------------
Q 005502 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG--------------- 187 (693)
Q Consensus 123 dl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~--------------- 187 (693)
|+.++ +.+..+.+|...|+.+.|+. ...++++|+.|.+|++||.|+...-|...
T Consensus 87 DV~TG----------kv~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~ 155 (307)
T KOG0316|consen 87 DVNTG----------KVDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE 155 (307)
T ss_pred EcccC----------eeeeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc
Confidence 99976 56889999999999999998 77899999999999999999865433211
Q ss_pred ----CCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCc
Q 005502 188 ----SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC 263 (693)
Q Consensus 188 ----~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~ 263 (693)
.+..++....++++.|... .. .-..+|+|++|+++ ++..++++.|+++|+.|..+++.+..+
T Consensus 156 heIvaGS~DGtvRtydiR~G~l~--sD--y~g~pit~vs~s~d-~nc~La~~l~stlrLlDk~tGklL~sY--------- 221 (307)
T KOG0316|consen 156 HEIVAGSVDGTVRTYDIRKGTLS--SD--YFGHPITSVSFSKD-GNCSLASSLDSTLRLLDKETGKLLKSY--------- 221 (307)
T ss_pred cEEEeeccCCcEEEEEeecceee--hh--hcCCcceeEEecCC-CCEEEEeeccceeeecccchhHHHHHh---------
Confidence 1112233334455544321 11 12347999999997 789999999999999999988765544
Q ss_pred ccccccCccccCCCCcc-ceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCC-ceeEEeccCCCcccccC
Q 005502 264 VNYFCPMHLSEHGRSSL-HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDA-SKIMSFTPTLNGLELQP 340 (693)
Q Consensus 264 ~~~~~~~~~~~~~h~~~-~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~-~~~~~~~p~~~g~~~~~ 340 (693)
.||.+. .-..++++....++++|+.||.|++||+.+......+..+..+ +..+.++|....+-.+.
T Consensus 222 -----------kGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~ 289 (307)
T KOG0316|consen 222 -----------KGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT 289 (307)
T ss_pred -----------cccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEec
Confidence 223221 2456788888899999999999999999996655555444444 56777888765544333
No 20
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=7.4e-26 Score=250.59 Aligned_cols=243 Identities=27% Similarity=0.392 Sum_probs=198.8
Q ss_pred ceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEC-CCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 005502 42 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSY-SSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (693)
Q Consensus 42 ~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~-~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~ 120 (693)
+.+++.+|...|++++|+|+|+++++|+.|++|+|||+ ..+..++++ .+|...|++++|+|. ++++++|+.|++|+
T Consensus 195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l-~gH~~~v~~~~f~p~--g~~i~Sgs~D~tvr 271 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTL-KGHSTYVTSVAFSPD--GNLLVSGSDDGTVR 271 (456)
T ss_pred hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEe-cCCCCceEEEEecCC--CCEEEEecCCCcEE
Confidence 67778999999999999999999999999999999999 555888888 699999999999999 59999999999999
Q ss_pred EEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEec
Q 005502 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (693)
Q Consensus 121 vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~ 200 (693)
|||++.. +++..+.+|...|++++|++ ++++|++++.||.|++||+.++... |..
T Consensus 272 iWd~~~~----------~~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~---------~~~----- 326 (456)
T KOG0266|consen 272 IWDVRTG----------ECVRKLKGHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKL---------CLK----- 326 (456)
T ss_pred EEeccCC----------eEEEeeeccCCceEEEEECC-CCCEEEEcCCCccEEEEECCCCcee---------eee-----
Confidence 9999974 67899999999999999999 7789999999999999999987621 000
Q ss_pred cCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCc-
Q 005502 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS- 279 (693)
Q Consensus 201 ~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~- 279 (693)
.+....... .++++.|+|+ +.++++++.|+.+++||++.+.....+ .+|..
T Consensus 327 ------~~~~~~~~~-~~~~~~fsp~-~~~ll~~~~d~~~~~w~l~~~~~~~~~--------------------~~~~~~ 378 (456)
T KOG0266|consen 327 ------LLSGAENSA-PVTSVQFSPN-GKYLLSASLDRTLKLWDLRSGKSVGTY--------------------TGHSNL 378 (456)
T ss_pred ------cccCCCCCC-ceeEEEECCC-CcEEEEecCCCeEEEEEccCCcceeee--------------------cccCCc
Confidence 111111223 6899999997 799999999999999999987543322 12222
Q ss_pred -cceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeec-CCCceeEEeccCCCcccccC
Q 005502 280 -LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV-GDASKIMSFTPTLNGLELQP 340 (693)
Q Consensus 280 -~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~-~~~~~~~~~~p~~~g~~~~~ 340 (693)
..+.+..+++.+.++++|+.|+.|++||+.++........+ ......+.++|..+.+....
T Consensus 379 ~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s 441 (456)
T KOG0266|consen 379 VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSS 441 (456)
T ss_pred ceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecC
Confidence 14566677899999999999999999999997666655555 45566777888777665554
No 21
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.1e-25 Score=226.57 Aligned_cols=206 Identities=19% Similarity=0.235 Sum_probs=164.8
Q ss_pred eEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCc---EEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 005502 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (693)
Q Consensus 43 ~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~---~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V 119 (693)
.++|..|++.|+-+.|+++|++|||++.|.+..||.+.... ..+++ .+|..+|..+.|+|+ +++|++|+.|..+
T Consensus 217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tl-vgh~~~V~yi~wSPD--dryLlaCg~~e~~ 293 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTL-VGHSQPVSYIMWSPD--DRYLLACGFDEVL 293 (519)
T ss_pred hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeee-ecccCceEEEEECCC--CCeEEecCchHhe
Confidence 45678999999999999999999999999999999876443 45666 799999999999999 6999999999999
Q ss_pred EEEEcCCCCCCCCCCCCCCCceee-ccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEE
Q 005502 120 RLFNLSRFSGRGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (693)
Q Consensus 120 ~vwdl~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~ 198 (693)
.+||+.++. ....+ .+|...+.+.+|.| ++..|++|+.|++|..||+.....- -|
T Consensus 294 ~lwDv~tgd----------~~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~~~-------------~W 349 (519)
T KOG0293|consen 294 SLWDVDTGD----------LRHLYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGNILG-------------NW 349 (519)
T ss_pred eeccCCcch----------hhhhcccCcCCCcceeEEcc-CCceeEecCCCCcEEEecCCcchhh-------------cc
Confidence 999999753 22222 23568999999999 6678899999999999999764310 00
Q ss_pred eccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCC
Q 005502 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (693)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 278 (693)
. + .....|.++++.++ ++++++.+.|..|++|++.+..... .. ..
T Consensus 350 ~---g---------vr~~~v~dlait~D-gk~vl~v~~d~~i~l~~~e~~~dr~-------------li---------se 394 (519)
T KOG0293|consen 350 E---G---------VRDPKVHDLAITYD-GKYVLLVTVDKKIRLYNREARVDRG-------------LI---------SE 394 (519)
T ss_pred c---c---------cccceeEEEEEcCC-CcEEEEEecccceeeechhhhhhhc-------------cc---------cc
Confidence 0 0 11246889999998 6888888899999999987643211 00 11
Q ss_pred ccceEEEEEcCCCCEEEEEecCCcEEEEECCC
Q 005502 279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 279 ~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~ 310 (693)
..+|+++++|.+|+++++.-.+..|++||+..
T Consensus 395 ~~~its~~iS~d~k~~LvnL~~qei~LWDl~e 426 (519)
T KOG0293|consen 395 EQPITSFSISKDGKLALVNLQDQEIHLWDLEE 426 (519)
T ss_pred cCceeEEEEcCCCcEEEEEcccCeeEEeecch
Confidence 12699999999999999999999999999775
No 22
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.94 E-value=8.8e-26 Score=231.04 Aligned_cols=247 Identities=18% Similarity=0.247 Sum_probs=202.1
Q ss_pred CcccccchhhhccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCC
Q 005502 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS 106 (693)
Q Consensus 27 ~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~ 106 (693)
+..+++|. ....++.+|..|.++|.+|.|+..|++|++++.|+++.|||..++.....+ .-|..+-.+|.|..+
T Consensus 256 ~G~~riw~---~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f-~~~s~~~lDVdW~~~-- 329 (524)
T KOG0273|consen 256 DGEARIWN---KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQF-EFHSAPALDVDWQSN-- 329 (524)
T ss_pred CcEEEEEe---cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEee-eeccCCccceEEecC--
Confidence 34455554 445677788999999999999999999999999999999999999888877 678888789999876
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCC
Q 005502 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA 186 (693)
Q Consensus 107 ~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~ 186 (693)
..|++++.|+.|+|+.+... .|+.++.+|...|.+|.|+| .+.+|+|++.|++++||.+.....+
T Consensus 330 -~~F~ts~td~~i~V~kv~~~----------~P~~t~~GH~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~~~~~--- 394 (524)
T KOG0273|consen 330 -DEFATSSTDGCIHVCKVGED----------RPVKTFIGHHGEVNALKWNP-TGSLLASCSDDGTLKIWSMGQSNSV--- 394 (524)
T ss_pred -ceEeecCCCceEEEEEecCC----------CcceeeecccCceEEEEECC-CCceEEEecCCCeeEeeecCCCcch---
Confidence 68999999999999999864 78999999999999999999 6689999999999999998765422
Q ss_pred CCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCC--------CcEEEEEeCCCcEEEEecCCCCCCcccccCC
Q 005502 187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR--------PHLLLVGGSDAFARLYDRRMLPPLTSCQKRM 258 (693)
Q Consensus 187 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~--------~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~ 258 (693)
.....|...|..+.|+|.+ +..+++++.|++|++||+..+.++..+
T Consensus 395 ----------------------~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f---- 448 (524)
T KOG0273|consen 395 ----------------------HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL---- 448 (524)
T ss_pred ----------------------hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEee----
Confidence 2233456677777777753 468999999999999999988665443
Q ss_pred CCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCcccc
Q 005502 259 SPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLEL 338 (693)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~ 338 (693)
..|.. +|.+|+|+|+|++|++|+.||.|.+|++++++ .-..+.....+..++|+...+.+..
T Consensus 449 ----------------~kH~~-pVysvafS~~g~ylAsGs~dg~V~iws~~~~~-l~~s~~~~~~Ifel~Wn~~G~kl~~ 510 (524)
T KOG0273|consen 449 ----------------MKHQE-PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK-LVKSYQGTGGIFELCWNAAGDKLGA 510 (524)
T ss_pred ----------------ccCCC-ceEEEEecCCCcEEEecCCCCeeEeccccchh-eeEeecCCCeEEEEEEcCCCCEEEE
Confidence 23444 79999999999999999999999999999965 3334444555677888877665543
No 23
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.94 E-value=2.1e-26 Score=228.08 Aligned_cols=216 Identities=19% Similarity=0.260 Sum_probs=186.4
Q ss_pred cccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 005502 39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 118 (693)
Q Consensus 39 ~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~ 118 (693)
..++.+.+.||.+-|.|+++.|.+.+|+||+.|++|+|||+.++++..++ +||...|..|++++- ..++++++.|+.
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltl-tGhi~~vr~vavS~r--HpYlFs~gedk~ 216 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTL-TGHIETVRGVAVSKR--HPYLFSAGEDKQ 216 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEee-cchhheeeeeeeccc--CceEEEecCCCe
Confidence 45677889999999999999999999999999999999999999999999 899999999999998 489999999999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEE
Q 005502 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (693)
Q Consensus 119 V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~ 198 (693)
|+.||+..+ +.+..+.+|-+.|.+++.+| .-..|+||+.|.++|+||+|+..
T Consensus 217 VKCwDLe~n----------kvIR~YhGHlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~----------------- 268 (460)
T KOG0285|consen 217 VKCWDLEYN----------KVIRHYHGHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRA----------------- 268 (460)
T ss_pred eEEEechhh----------hhHHHhccccceeEEEeccc-cceeEEecCCcceEEEeeecccc-----------------
Confidence 999999975 66889999999999999999 45789999999999999999865
Q ss_pred eccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCC
Q 005502 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (693)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 278 (693)
.+....+|...|.++.+.|.++ .+++|+.|++|++||++.++....+ .|.
T Consensus 269 --------~V~~l~GH~~~V~~V~~~~~dp-qvit~S~D~tvrlWDl~agkt~~tl---------------------t~h 318 (460)
T KOG0285|consen 269 --------SVHVLSGHTNPVASVMCQPTDP-QVITGSHDSTVRLWDLRAGKTMITL---------------------THH 318 (460)
T ss_pred --------eEEEecCCCCcceeEEeecCCC-ceEEecCCceEEEeeeccCceeEee---------------------ecc
Confidence 2334457888999999999865 7999999999999999987643222 123
Q ss_pred ccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceE
Q 005502 279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM 316 (693)
Q Consensus 279 ~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~ 316 (693)
...|.+++.+|....+++++.| .|+-|++..+....-
T Consensus 319 kksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~n 355 (460)
T KOG0285|consen 319 KKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQN 355 (460)
T ss_pred cceeeEEecCCchhhhhccCCc-cceeccCCccchhhc
Confidence 3369999999999888888776 789999998754433
No 24
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.5e-25 Score=213.68 Aligned_cols=220 Identities=21% Similarity=0.306 Sum_probs=185.0
Q ss_pred cccceEEeccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEECCC---CcEEEEeccCCCcceEEEEEeeCCCCCEEEEEe
Q 005502 39 RLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSS---RKLLHSIETGHSANVFCTKFVPETSDELVVSGA 114 (693)
Q Consensus 39 ~l~~~~~l~gH~~~V~~l~~s~~-g~~LaSgs~Dg~I~IWd~~~---~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs 114 (693)
++..++.++||.+.|..++|+|- |.+||||+.|+.|+||+... ..+...+..+|+..|.+++|+|. |++|++|+
T Consensus 3 ~l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~--g~~La~aS 80 (312)
T KOG0645|consen 3 RLILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPH--GRYLASAS 80 (312)
T ss_pred cceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCC--CcEEEEee
Confidence 36678899999999999999997 88999999999999999884 45666777799999999999999 79999999
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccc
Q 005502 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (693)
Q Consensus 115 ~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~ 194 (693)
.|.++.||.-.... .+++.++.+|...|++++|++ ++++||+++.|+.|-+|.+.... ..+|.
T Consensus 81 FD~t~~Iw~k~~~e--------fecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~dedd--------Efec~ 143 (312)
T KOG0645|consen 81 FDATVVIWKKEDGE--------FECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDD--------EFECI 143 (312)
T ss_pred ccceEEEeecCCCc--------eeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCC--------cEEEE
Confidence 99999999776432 367899999999999999999 78999999999999999987543 22333
Q ss_pred eEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCcccc
Q 005502 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 274 (693)
Q Consensus 195 ~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (693)
.+ ...|...|+.+.|+|. ..+|++++.|.+|++|....... =.|++++
T Consensus 144 aV--------------L~~HtqDVK~V~WHPt-~dlL~S~SYDnTIk~~~~~~ddd----------W~c~~tl------- 191 (312)
T KOG0645|consen 144 AV--------------LQEHTQDVKHVIWHPT-EDLLFSCSYDNTIKVYRDEDDDD----------WECVQTL------- 191 (312)
T ss_pred ee--------------eccccccccEEEEcCC-cceeEEeccCCeEEEEeecCCCC----------eeEEEEe-------
Confidence 33 3367788999999997 57999999999999998763211 1345554
Q ss_pred CCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCC
Q 005502 275 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 275 ~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~ 310 (693)
.+|.+ .|.+++|+|.|..|++++.|++|+||-..+
T Consensus 192 ~g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~ 226 (312)
T KOG0645|consen 192 DGHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRLYT 226 (312)
T ss_pred cCccc-eEEEEEecCCCceEEEecCCcceEeeeecc
Confidence 55665 699999999999999999999999998664
No 25
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=4e-25 Score=244.32 Aligned_cols=231 Identities=16% Similarity=0.280 Sum_probs=173.7
Q ss_pred EeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEECCCCc-------EEEEeccCCCcceEEEEEeeCCCCCEEEEEeCC
Q 005502 45 ELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRK-------LLHSIETGHSANVFCTKFVPETSDELVVSGAGD 116 (693)
Q Consensus 45 ~l~gH~~~V~~l~~s~-~g~~LaSgs~Dg~I~IWd~~~~~-------~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~D 116 (693)
.|.||.+.|++++|+| ++.+||||+.|++|+|||+.++. .+..+ .+|...|.+++|+|.. +++|++|+.|
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L-~gH~~~V~~l~f~P~~-~~iLaSgs~D 147 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHL-QGHTKKVGIVSFHPSA-MNVLASAGAD 147 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEe-cCCCCcEEEEEeCcCC-CCEEEEEeCC
Confidence 5789999999999999 88999999999999999997652 45566 7899999999999984 4799999999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceE
Q 005502 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (693)
Q Consensus 117 g~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~ 196 (693)
++|+|||+... ..+..+.+|...|.+++|+| ++.+|++++.||+|++||+++++..
T Consensus 148 gtVrIWDl~tg----------~~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v------------- 203 (493)
T PTZ00421 148 MVVNVWDVERG----------KAVEVIKCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIV------------- 203 (493)
T ss_pred CEEEEEECCCC----------eEEEEEcCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEE-------------
Confidence 99999999864 45677888999999999999 6789999999999999999986521
Q ss_pred EEeccCCceeeecCCCCCc-cceEEEEEcCCCCcEEEEE---eCCCcEEEEecCCCCCCcccccCCCCCCcccccccCcc
Q 005502 197 LLDLRCGAKRSLADPPKQT-LSLKSCDISSTRPHLLLVG---GSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL 272 (693)
Q Consensus 197 l~~~~~~~~~~l~~~~~~~-~~v~sl~~sp~~~~~Latg---s~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (693)
..+ ..|. ..+..+.|.|+.+.++.+| +.|+.|++||+++.... +...
T Consensus 204 -~tl-----------~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p------------~~~~----- 254 (493)
T PTZ00421 204 -SSV-----------EAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASP------------YSTV----- 254 (493)
T ss_pred -EEE-----------ecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCc------------eeEe-----
Confidence 100 1121 1234677888754444444 24899999999865311 1111
Q ss_pred ccCCCCccceEEEEEcCCCCEEEEEe-cCCcEEEEECCCCCcceE-EeecCCCceeEEeccC
Q 005502 273 SEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHAGGRAM-RYTVGDASKIMSFTPT 332 (693)
Q Consensus 273 ~~~~h~~~~V~~v~fspdg~~L~sgs-~Dg~V~lwDl~~~~~~~~-~~~~~~~~~~~~~~p~ 332 (693)
..+....+....|++++.+|++++ +|+.|++||+.++..... .+....+.+.+++.|.
T Consensus 255 --~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 255 --DLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred --ccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 001122466778999999999887 599999999998653322 2334456667777774
No 26
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=1.9e-25 Score=239.56 Aligned_cols=357 Identities=16% Similarity=0.163 Sum_probs=239.7
Q ss_pred EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCc----EEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 005502 45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK----LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (693)
Q Consensus 45 ~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~----~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~ 120 (693)
.+.||+..|.+|....+|-+|+|||.|.+|++|.++.+. ++... .+|.+.|.+|+++... ..+|++++.|++++
T Consensus 360 ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~-~gH~~svgava~~~~~-asffvsvS~D~tlK 437 (775)
T KOG0319|consen 360 IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQA-NGHTNSVGAVAGSKLG-ASFFVSVSQDCTLK 437 (775)
T ss_pred EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhh-cccccccceeeecccC-ccEEEEecCCceEE
Confidence 789999999999966788999999999999999884432 33334 6999999999997664 68999999999999
Q ss_pred EEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEec
Q 005502 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (693)
Q Consensus 121 vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~ 200 (693)
+|++........ .+......+..+|...|++++++| +..+|+|||.|.+.++|++....
T Consensus 438 ~W~l~~s~~~~~-~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~------------------- 496 (775)
T KOG0319|consen 438 LWDLPKSKETAF-PIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLR------------------- 496 (775)
T ss_pred EecCCCcccccc-cceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCce-------------------
Confidence 999986221111 111122224567999999999999 77999999999999999998533
Q ss_pred cCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCcc
Q 005502 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 280 (693)
Q Consensus 201 ~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 280 (693)
.+....+|...|.|+.|+|. .++++|++.|++|+||.+.+. .|+++| .||..
T Consensus 497 ------l~~vLsGH~RGvw~V~Fs~~-dq~laT~SgD~TvKIW~is~f-------------SClkT~-------eGH~~- 548 (775)
T KOG0319|consen 497 ------LLGVLSGHTRGVWCVSFSKN-DQLLATCSGDKTVKIWSISTF-------------SCLKTF-------EGHTS- 548 (775)
T ss_pred ------EEEEeeCCccceEEEEeccc-cceeEeccCCceEEEEEeccc-------------eeeeee-------cCccc-
Confidence 12233467889999999997 689999999999999999986 577777 67777
Q ss_pred ceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCcccccCCcccccccccccccccccCc
Q 005502 281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGL 360 (693)
Q Consensus 281 ~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (693)
.|..+.|-.+|+.|++++.||-|+||++.+..+...+-.|.+.+..+..+|..+-+......+.+........
T Consensus 549 aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te------- 621 (775)
T KOG0319|consen 549 AVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE------- 621 (775)
T ss_pred eeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCcH-------
Confidence 6999999999999999999999999999998888877777666666666665543222233333332222111
Q ss_pred chhhhHHHHHHhhhhcCCChhHHHH--hhHHHHhcccCCCCCcchhhhhhhH-HHHHHhccccCcHHHHHHhHhHhhccC
Q 005502 361 GKCRMLVEIARNSLEEGKHPYYGIE--ACNEVLEGHLSGIGPMLRHECLCIR-AALLLKRKWKNDAQMAIRDCYNARRID 437 (693)
Q Consensus 361 ~~a~~lk~~gn~~~~~g~~y~~Ai~--~Y~~ai~~~~~~~~~~~~~~~~~NR-A~~~lk~~~~~d~~~A~~Dc~~Al~ld 437 (693)
....+..++.++...++++.+..+. -|++|+-+.-.. +++ .+..+- -++|-+|. .+-|.+. ...|+
T Consensus 622 ~~~~ee~~K~~eaieq~QeL~n~l~~~~~~~A~~LA~tL-d~P---~~~f~vi~~~~r~r~-----~e~l~~a--v~~L~ 690 (775)
T KOG0319|consen 622 EEQNEEQEKREEAIEQEQELENLLSQKRYTKAFVLALTL-DKP---HLVFTVINALYRERD-----PEELGQA--VFRLN 690 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHhhc-cCc---hhHHHHHHHHHhcCC-----cHHHHHH--HHHhh
Confidence 1222222223333333332222222 355555433211 111 111111 13444442 1222222 23556
Q ss_pred CCCcchhhhHHHHHHH-hccHHHHHHHHHHHccc
Q 005502 438 SSSFRAHLYMSEALEQ-LCKYKEALDFAIAAQCL 470 (693)
Q Consensus 438 p~~~KA~~r~a~al~~-l~~~~eA~~~~~~~~~~ 470 (693)
-+-++++++.....-. -+....|...+..++..
T Consensus 691 ~dq~~~Ll~~~~~WnTnsk~c~vaQ~vL~~~l~~ 724 (775)
T KOG0319|consen 691 EDQPEALLQFVVKWNTNSKTCHVAQRVLYEILKR 724 (775)
T ss_pred hhhHHHHHHHHHHhcCCcchhHHHHHHHHHHHhc
Confidence 6667788877766644 44445555556555544
No 27
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.94 E-value=2.2e-26 Score=236.39 Aligned_cols=255 Identities=20% Similarity=0.318 Sum_probs=201.5
Q ss_pred cceEEeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEECCC-CcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 005502 41 SQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSS-RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 118 (693)
Q Consensus 41 ~~~~~l~gH~~~V~~l~~s~-~g~~LaSgs~Dg~I~IWd~~~-~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~ 118 (693)
++++++.||+..|+++.|.| .+.+|++|+.|+.|+||++-. +++++++ .+|..+|.+++|++. |..|+|++.|+.
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf-~gH~k~Vrd~~~s~~--g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTF-KGHRKPVRDASFNNC--GTSFLSASFDRF 281 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhh-hcchhhhhhhhcccc--CCeeeeeeccee
Confidence 56888999999999999999 899999999999999999876 7899999 899999999999998 799999999999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEE
Q 005502 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (693)
Q Consensus 119 V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~ 198 (693)
|++||++++ ..+..+. -...++++.|+|++.++|++|+.|+.|+.||+|+++.+
T Consensus 282 lKlwDtETG----------~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvv--------------- 335 (503)
T KOG0282|consen 282 LKLWDTETG----------QVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVV--------------- 335 (503)
T ss_pred eeeeccccc----------eEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHH---------------
Confidence 999999976 3344443 34578999999988899999999999999999998632
Q ss_pred eccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccC-CCCCCcccc------cc---
Q 005502 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR-MSPPPCVNY------FC--- 268 (693)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~-~~~~~~~~~------~~--- 268 (693)
.....|...|..+.|-+. +..+++.+.|+.|+||+.+...++...... +..-+|+.. +.
T Consensus 336 ----------qeYd~hLg~i~~i~F~~~-g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs 404 (503)
T KOG0282|consen 336 ----------QEYDRHLGAILDITFVDE-GRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQS 404 (503)
T ss_pred ----------HHHHhhhhheeeeEEccC-CceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhc
Confidence 233345678899999996 789999999999999999877655432211 111111110 00
Q ss_pred ------------cCcc----ccCCCC-ccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEecc
Q 005502 269 ------------PMHL----SEHGRS-SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP 331 (693)
Q Consensus 269 ------------~~~~----~~~~h~-~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p 331 (693)
+..+ ...||. .+.-..|.|||||.+|++|.+||.+++||-++-+.....-.+..+...+.|+|
T Consensus 405 ~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP 484 (503)
T KOG0282|consen 405 MDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHP 484 (503)
T ss_pred cCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecC
Confidence 0000 002332 11356799999999999999999999999999776666667778888999999
Q ss_pred CCCc
Q 005502 332 TLNG 335 (693)
Q Consensus 332 ~~~g 335 (693)
....
T Consensus 485 ~e~S 488 (503)
T KOG0282|consen 485 VEPS 488 (503)
T ss_pred CCcc
Confidence 7544
No 28
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.94 E-value=1.5e-26 Score=232.84 Aligned_cols=226 Identities=22% Similarity=0.369 Sum_probs=188.9
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCC
Q 005502 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (693)
Q Consensus 50 ~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~ 129 (693)
..+|+.+.|.|+|+.|++|+..|-+.+|+..+.... .+.+.|..+|.++.|+++ +..++||..+|.|++|+.+..
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFE-tilQaHDs~Vr~m~ws~~--g~wmiSgD~gG~iKyWqpnmn-- 170 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFE-TILQAHDSPVRTMKWSHN--GTWMISGDKGGMIKYWQPNMN-- 170 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHH-HHhhhhcccceeEEEccC--CCEEEEcCCCceEEecccchh--
Confidence 458999999999999999999999999997543333 334799999999999998 799999999999999999863
Q ss_pred CCCCCCCCCCceeeccCC-CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeee
Q 005502 130 RGLDDNAITPSALYQCHT-RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 208 (693)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~-~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 208 (693)
.++.+.+|. ..|++++|+| +...|+|++.||+|+|||.+..+.- .+
T Consensus 171 ---------nVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee-----------~v------------ 217 (464)
T KOG0284|consen 171 ---------NVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEE-----------RV------------ 217 (464)
T ss_pred ---------hhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchh-----------he------------
Confidence 356666665 8999999999 6678889999999999999876521 01
Q ss_pred cCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEc
Q 005502 209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS 288 (693)
Q Consensus 209 ~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fs 288 (693)
..+|.-.|++++|+|.. .++++|+.|..|++||.+++. |+.+. ++|.+ .|+.+.|+
T Consensus 218 --L~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~-------------cl~tl-------h~HKn-tVl~~~f~ 273 (464)
T KOG0284|consen 218 --LRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGS-------------CLATL-------HGHKN-TVLAVKFN 273 (464)
T ss_pred --eccCCCCcceeccCCcc-ceeEEccCCceeEeecCCCcc-------------hhhhh-------hhccc-eEEEEEEc
Confidence 13667789999999985 699999999999999999885 44333 55666 69999999
Q ss_pred CCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCccc
Q 005502 289 PNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLE 337 (693)
Q Consensus 289 pdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~ 337 (693)
|++++|++++.|..+++||+++.+.....-.+..-...+.|+|-..++-
T Consensus 274 ~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lf 322 (464)
T KOG0284|consen 274 PNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLF 322 (464)
T ss_pred CCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccce
Confidence 9999999999999999999997665555566777888899999877763
No 29
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.94 E-value=1.7e-26 Score=227.69 Aligned_cols=218 Identities=18% Similarity=0.332 Sum_probs=183.4
Q ss_pred CcccccchhhhccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCC
Q 005502 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS 106 (693)
Q Consensus 27 ~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~ 106 (693)
++++++|+ ...+.+.+.|.||+|.|.||.|. .+.|+|||.|.+|+|||+++++++.++ .+|...|..+.|+.
T Consensus 216 DnTikiWD--~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tl-ihHceaVLhlrf~n--- 287 (499)
T KOG0281|consen 216 DNTIKIWD--KNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTL-IHHCEAVLHLRFSN--- 287 (499)
T ss_pred cCceEEec--cccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHH-hhhcceeEEEEEeC---
Confidence 36778876 56788899999999999999996 459999999999999999999999998 69999999999984
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCC
Q 005502 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA 186 (693)
Q Consensus 107 ~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~ 186 (693)
.+++|++.|.+|.|||+..++. ......+.+|...|+.+.|. .++|+|++.|.+|++|++.+.+.
T Consensus 288 -g~mvtcSkDrsiaVWdm~sps~-------it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikvW~~st~ef---- 352 (499)
T KOG0281|consen 288 -GYMVTCSKDRSIAVWDMASPTD-------ITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWSTSTCEF---- 352 (499)
T ss_pred -CEEEEecCCceeEEEeccCchH-------HHHHHHHhhhhhheeeeccc---cceEEEecCCceEEEEeccceee----
Confidence 4999999999999999986531 24567788999999999995 46999999999999999988762
Q ss_pred CCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccc
Q 005502 187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266 (693)
Q Consensus 187 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~ 266 (693)
+....+|...|.|+.+. +.++++|++|.+||+||+..+ .|+..
T Consensus 353 ---------------------vRtl~gHkRGIAClQYr---~rlvVSGSSDntIRlwdi~~G-------------~cLRv 395 (499)
T KOG0281|consen 353 ---------------------VRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECG-------------ACLRV 395 (499)
T ss_pred ---------------------ehhhhcccccceehhcc---CeEEEecCCCceEEEEecccc-------------HHHHH
Confidence 22334566677777764 579999999999999999987 45544
Q ss_pred cccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcc
Q 005502 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR 314 (693)
Q Consensus 267 ~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~ 314 (693)
. .||.. -|.++.| |.+.+++|+.||+|++||+..+..+
T Consensus 396 L-------eGHEe-LvRciRF--d~krIVSGaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 396 L-------EGHEE-LVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDP 433 (499)
T ss_pred H-------hchHH-hhhheee--cCceeeeccccceEEEEecccccCC
Confidence 4 56766 3889999 5678999999999999999997654
No 30
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.94 E-value=3.4e-24 Score=221.95 Aligned_cols=287 Identities=17% Similarity=0.259 Sum_probs=211.2
Q ss_pred ccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEec--cCCCcceEEEEEeeCCCCCEEEEEeC
Q 005502 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE--TGHSANVFCTKFVPETSDELVVSGAG 115 (693)
Q Consensus 38 ~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~--~~h~~~I~sl~f~p~~~~~~l~sgs~ 115 (693)
..++...+++.|..-|+|+.|+|||+++||++.||+|.|||=.+++.+..+. .+|.+.|++|.|+|+ ...|+|++.
T Consensus 178 PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPD--s~~~~T~Sa 255 (603)
T KOG0318|consen 178 PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPD--STQFLTVSA 255 (603)
T ss_pred CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCC--CceEEEecC
Confidence 4456677888999999999999999999999999999999999999999883 389999999999999 589999999
Q ss_pred CCcEEEEEcCCCCCCC---------------------------------CCCCCCCCceeeccCCCCeEEEEEecCCCcE
Q 005502 116 DAEVRLFNLSRFSGRG---------------------------------LDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162 (693)
Q Consensus 116 Dg~V~vwdl~~~~~~~---------------------------------~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~ 162 (693)
|.+++|||+...+... +......+...+.+|...|+++..+| ++.+
T Consensus 256 Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~-d~~~ 334 (603)
T KOG0318|consen 256 DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP-DGKT 334 (603)
T ss_pred CceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC-CCCE
Confidence 9999999998643211 01122346778899999999999999 5589
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCCCCCCCcccce-------------------EEEec-------------cCCceeeecC
Q 005502 163 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN-------------------ILLDL-------------RCGAKRSLAD 210 (693)
Q Consensus 163 l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~-------------------~l~~~-------------~~~~~~~l~~ 210 (693)
|.||+.||.|.-||..++...+..+..|..-.. ...++ ..... .+..
T Consensus 335 i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~-~lav 413 (603)
T KOG0318|consen 335 IYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPK-GLAV 413 (603)
T ss_pred EEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCce-eEEE
Confidence 999999999999999887765433222211100 00100 00000 0000
Q ss_pred CC-------------------------CCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCccc
Q 005502 211 PP-------------------------KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN 265 (693)
Q Consensus 211 ~~-------------------------~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~ 265 (693)
.. .-.....+++++|+ +..+++|+.||.|+||.+......... .+
T Consensus 414 ~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~-~~~vaVGG~Dgkvhvysl~g~~l~ee~-------~~-- 483 (603)
T KOG0318|consen 414 LSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPD-GSEVAVGGQDGKVHVYSLSGDELKEEA-------KL-- 483 (603)
T ss_pred cCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCC-CCEEEEecccceEEEEEecCCccccee-------ee--
Confidence 00 01224568999997 689999999999999999865422110 00
Q ss_pred ccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEee-cCCCceeEEeccCCCcccccCCccc
Q 005502 266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYT-VGDASKIMSFTPTLNGLELQPPIHD 344 (693)
Q Consensus 266 ~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~-~~~~~~~~~~~p~~~g~~~~~~~~~ 344 (693)
..|.. +|++|+||||+.||+++...+.|.+||+.+.+....... |...+..++|+|....++.......
T Consensus 484 ---------~~h~a-~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~ 553 (603)
T KOG0318|consen 484 ---------LEHRA-AITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTN 553 (603)
T ss_pred ---------ecccC-CceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccce
Confidence 12444 699999999999999999999999999999664333332 4556778999999887766665555
Q ss_pred cccc
Q 005502 345 FLQT 348 (693)
Q Consensus 345 ~~~~ 348 (693)
....
T Consensus 554 Viiy 557 (603)
T KOG0318|consen 554 VIIY 557 (603)
T ss_pred EEEE
Confidence 5544
No 31
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3.8e-25 Score=240.25 Aligned_cols=273 Identities=20% Similarity=0.256 Sum_probs=205.7
Q ss_pred CcccccchhhhccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCC
Q 005502 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS 106 (693)
Q Consensus 27 ~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~ 106 (693)
...+|.|+- +-..++..|.+|.|+|..+.|+|.+.+++||++|.+|+||++.+.+++.++ .||.+-|..+.|++.
T Consensus 30 sG~IQlWDY--RM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL-~GHlDYVRt~~FHhe-- 104 (1202)
T KOG0292|consen 30 SGVIQLWDY--RMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTL-LGHLDYVRTVFFHHE-- 104 (1202)
T ss_pred Cceeeeehh--hhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhh-ccccceeEEeeccCC--
Confidence 356677763 345568889999999999999999999999999999999999999999999 799999999999998
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCC---
Q 005502 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC--- 183 (693)
Q Consensus 107 ~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~--- 183 (693)
-..|++++.|.+|+||+..+. .++..+.+|...|.|..|+| ...+++|+|-|.+||+||+..-+..
T Consensus 105 yPWIlSASDDQTIrIWNwqsr----------~~iavltGHnHYVMcAqFhp-tEDlIVSaSLDQTVRVWDisGLRkk~~~ 173 (1202)
T KOG0292|consen 105 YPWILSASDDQTIRIWNWQSR----------KCIAVLTGHNHYVMCAQFHP-TEDLIVSASLDQTVRVWDISGLRKKNKA 173 (1202)
T ss_pred CceEEEccCCCeEEEEeccCC----------ceEEEEecCceEEEeeccCC-ccceEEEecccceEEEEeecchhccCCC
Confidence 479999999999999999965 67999999999999999999 5679999999999999998643321
Q ss_pred CCCCCCCcccceEEEeccC-CceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCC
Q 005502 184 PPAGSSHQECRNILLDLRC-GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP 262 (693)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~-~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~ 262 (693)
+............--++-. ..........+|...|+-++|+|.- -+|++|+.|..|++|.+...+.-. -..
T Consensus 174 pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl-pliVSG~DDRqVKlWrmnetKaWE-------vDt 245 (1202)
T KOG0292|consen 174 PGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL-PLIVSGADDRQVKLWRMNETKAWE-------VDT 245 (1202)
T ss_pred CCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc-ceEEecCCcceeeEEEecccccee-------ehh
Confidence 1100000011110000110 0112223445788899999999984 599999999999999887533110 001
Q ss_pred cccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCc
Q 005502 263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNG 335 (693)
Q Consensus 263 ~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~g 335 (693)
| .||.+ .|+++-|+|....+++.+.|+.|++||+........+-...+.-..++.+|..|-
T Consensus 246 c-----------rgH~n-nVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNL 306 (1202)
T KOG0292|consen 246 C-----------RGHYN-NVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNL 306 (1202)
T ss_pred h-----------hcccC-CcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcce
Confidence 1 45666 6999999999999999999999999999985544444333333344455555443
No 32
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.4e-25 Score=243.38 Aligned_cols=241 Identities=20% Similarity=0.295 Sum_probs=178.7
Q ss_pred hccccceEEec-cCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC--------------------------------C-
Q 005502 37 VRRLSQERELE-GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS--------------------------------R- 82 (693)
Q Consensus 37 i~~l~~~~~l~-gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~--------------------------------~- 82 (693)
+..+...+++. .|.+.|+++.|++||+|||||+.|+.|+||.+.. .
T Consensus 253 lsal~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~ 332 (712)
T KOG0283|consen 253 LSALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKI 332 (712)
T ss_pred ceeeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccc
Confidence 34445566677 8999999999999999999999999999998654 0
Q ss_pred ---------------------------cEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCC
Q 005502 83 ---------------------------KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDN 135 (693)
Q Consensus 83 ---------------------------~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~ 135 (693)
++++.+ .||.+.|.+|.|+.+ ++|++++.|.+||+|++...
T Consensus 333 ~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef-~GHt~DILDlSWSKn---~fLLSSSMDKTVRLWh~~~~-------- 400 (712)
T KOG0283|consen 333 SSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEF-KGHTADILDLSWSKN---NFLLSSSMDKTVRLWHPGRK-------- 400 (712)
T ss_pred cccccccccccCCccccCCCccccccccchhhh-hccchhheecccccC---CeeEeccccccEEeecCCCc--------
Confidence 011222 699999999999987 69999999999999999864
Q ss_pred CCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCC--------CCCCCCCcccceEEEeccCCceee
Q 005502 136 AITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC--------PPAGSSHQECRNILLDLRCGAKRS 207 (693)
Q Consensus 136 ~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~ 207 (693)
.+++.|. |...|+||+|+|.+.++|+||+-||.||||++...+.. .....-.+++...++..-.|....
T Consensus 401 --~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~f 477 (712)
T KOG0283|consen 401 --ECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRF 477 (712)
T ss_pred --ceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEE
Confidence 6688886 99999999999999999999999999999999776532 000011112222222222222111
Q ss_pred e-------------cCC---CCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCc
Q 005502 208 L-------------ADP---PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 271 (693)
Q Consensus 208 l-------------~~~---~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (693)
+ ... ......|+.+.|.|..+..+++.+.|..|||||.+....+..+...
T Consensus 478 Y~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~-------------- 543 (712)
T KOG0283|consen 478 YDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGF-------------- 543 (712)
T ss_pred EEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccc--------------
Confidence 1 111 1112279999999988888999999999999999876655444210
Q ss_pred cccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCC
Q 005502 272 LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (693)
Q Consensus 272 ~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~ 311 (693)
+....-....|+.||++|++++.|..||+|++...
T Consensus 544 -----~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 544 -----RNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred -----ccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 11112356889999999999999999999999873
No 33
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=1.4e-24 Score=240.31 Aligned_cols=225 Identities=25% Similarity=0.416 Sum_probs=186.0
Q ss_pred cceEEeccC-CCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCc--EEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 005502 41 SQERELEGH-QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (693)
Q Consensus 41 ~~~~~l~gH-~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~--~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg 117 (693)
.....+.+| ...|.|+.|+++|+.|++++.|+.|++|++.+.+ .+..+ .+|...|.+++|+|+ +.++++|+.|+
T Consensus 149 ~~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l-~~h~~~v~~~~fs~d--~~~l~s~s~D~ 225 (456)
T KOG0266|consen 149 SLEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLREL-SGHTRGVSDVAFSPD--GSYLLSGSDDK 225 (456)
T ss_pred eeeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccc-cccccceeeeEECCC--CcEEEEecCCc
Confidence 336666665 7899999999999999999999999999998777 66777 799999999999999 68999999999
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEE
Q 005502 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (693)
Q Consensus 118 ~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l 197 (693)
+|+|||+... + ..++++.+|...|++++|+|.+ +++++|+.|++|++||+++++.
T Consensus 226 tiriwd~~~~-~--------~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~--------------- 280 (456)
T KOG0266|consen 226 TLRIWDLKDD-G--------RNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGEC--------------- 280 (456)
T ss_pred eEEEeeccCC-C--------eEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeE---------------
Confidence 9999999432 1 4588999999999999999966 9999999999999999998652
Q ss_pred EeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCC
Q 005502 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 277 (693)
Q Consensus 198 ~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 277 (693)
+.....|...|++++|+++ +++|++++.|+.|++||+.++... |+..+ .++
T Consensus 281 ----------~~~l~~hs~~is~~~f~~d-~~~l~s~s~d~~i~vwd~~~~~~~-----------~~~~~-------~~~ 331 (456)
T KOG0266|consen 281 ----------VRKLKGHSDGISGLAFSPD-GNLLVSASYDGTIRVWDLETGSKL-----------CLKLL-------SGA 331 (456)
T ss_pred ----------EEeeeccCCceEEEEECCC-CCEEEEcCCCccEEEEECCCCcee-----------eeecc-------cCC
Confidence 2223356779999999997 789999999999999999987521 11111 122
Q ss_pred Ccc-ceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCC
Q 005502 278 SSL-HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGD 322 (693)
Q Consensus 278 ~~~-~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~ 322 (693)
... +++++.|+|++.+|++++.|+.+++||+..+........+..
T Consensus 332 ~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~ 377 (456)
T KOG0266|consen 332 ENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSN 377 (456)
T ss_pred CCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCC
Confidence 222 699999999999999999999999999999765555544433
No 34
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.8e-25 Score=212.74 Aligned_cols=227 Identities=18% Similarity=0.306 Sum_probs=191.4
Q ss_pred CcCcccccchhhhccccceEEeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEee
Q 005502 25 DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103 (693)
Q Consensus 25 ~~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~-~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p 103 (693)
..+..+++++ ....-++++.++.|...|.++.|++ .+..++++|.|++|+||+....+.+.++ .+|...|...+|+|
T Consensus 80 ~GDGSLrl~d-~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf-~gh~~~Iy~a~~sp 157 (311)
T KOG0277|consen 80 SGDGSLRLFD-LTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTF-NGHNSCIYQAAFSP 157 (311)
T ss_pred ecCceEEEec-cCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEee-cCCccEEEEEecCC
Confidence 3558889988 5566679999999999999999999 5678888999999999999999999999 89999999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCC
Q 005502 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (693)
Q Consensus 104 ~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~ 183 (693)
.. +++|++++.|+++++||++.+ + + ...+..|...|.++.|+..+.++++||+.|+.|++||+|.-+.+
T Consensus 158 ~~-~nlfas~Sgd~~l~lwdvr~~-g--------k-~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p 226 (311)
T KOG0277|consen 158 HI-PNLFASASGDGTLRLWDVRSP-G--------K-FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTP 226 (311)
T ss_pred CC-CCeEEEccCCceEEEEEecCC-C--------c-eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcccc
Confidence 96 789999999999999999875 2 2 23478899999999999999999999999999999999986532
Q ss_pred CCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCc
Q 005502 184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC 263 (693)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~ 263 (693)
+....+|...|..++|||....+||+++.|-++||||..... .+
T Consensus 227 ------------------------l~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d------------s~ 270 (311)
T KOG0277|consen 227 ------------------------LFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD------------SA 270 (311)
T ss_pred ------------------------ceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch------------hh
Confidence 333457889999999999988999999999999999987432 22
Q ss_pred ccccccCccccCCCCccceEEEEEcC-CCCEEEEEecCCcEEEEEC
Q 005502 264 VNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDV 308 (693)
Q Consensus 264 ~~~~~~~~~~~~~h~~~~V~~v~fsp-dg~~L~sgs~Dg~V~lwDl 308 (693)
+.+. ..|.. -|..+.||+ ++.++++++-|+.++||+-
T Consensus 271 ~e~~-------~~HtE-Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 271 IETV-------DHHTE-FVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhh-------hccce-EEeccccccccCceeeecccccceeeecc
Confidence 2222 12333 588999997 5668888888999999983
No 35
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.93 E-value=2.4e-24 Score=213.56 Aligned_cols=253 Identities=17% Similarity=0.348 Sum_probs=200.6
Q ss_pred CcCcccccchhhhccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeC
Q 005502 25 DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 104 (693)
Q Consensus 25 ~~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~ 104 (693)
..+..+++|+ +.+.++..+|.||-..|..+++++-..||++++.|+.|+-||++..+.++.+ .||-..|.|++.+|.
T Consensus 170 s~DrtikIwD--latg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~Y-hGHlS~V~~L~lhPT 246 (460)
T KOG0285|consen 170 SADRTIKIWD--LATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHY-HGHLSGVYCLDLHPT 246 (460)
T ss_pred CCCceeEEEE--cccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHh-ccccceeEEEecccc
Confidence 4567888887 4566677889999999999999999999999999999999999999999998 799999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCC
Q 005502 105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP 184 (693)
Q Consensus 105 ~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~ 184 (693)
...|+||+.|.++||||+++. ..+..+.+|..+|.++.+.|.+++++ ||+.|++|++||++.++...
T Consensus 247 --ldvl~t~grDst~RvWDiRtr----------~~V~~l~GH~~~V~~V~~~~~dpqvi-t~S~D~tvrlWDl~agkt~~ 313 (460)
T KOG0285|consen 247 --LDVLVTGGRDSTIRVWDIRTR----------ASVHVLSGHTNPVASVMCQPTDPQVI-TGSHDSTVRLWDLRAGKTMI 313 (460)
T ss_pred --ceeEEecCCcceEEEeeeccc----------ceEEEecCCCCcceeEEeecCCCceE-EecCCceEEEeeeccCceeE
Confidence 689999999999999999975 56899999999999999999887655 99999999999999987542
Q ss_pred CCCCCCcc----------------cce--EEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecC
Q 005502 185 PAGSSHQE----------------CRN--ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR 246 (693)
Q Consensus 185 ~~~~~~~~----------------~~~--~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r 246 (693)
....+... +.. .-|++..+. .+....+|...|.+++.+.+ .++++|+..|.+.+||.+
T Consensus 314 tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~--f~~nlsgh~~iintl~~nsD--~v~~~G~dng~~~fwdwk 389 (460)
T KOG0285|consen 314 TLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGE--FLQNLSGHNAIINTLSVNSD--GVLVSGGDNGSIMFWDWK 389 (460)
T ss_pred eeecccceeeEEecCCchhhhhccCCccceeccCCccc--hhhccccccceeeeeeeccC--ceEEEcCCceEEEEEecC
Confidence 21111110 111 112222222 33445567788999999997 499999999999999999
Q ss_pred CCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCC
Q 005502 247 MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~ 310 (693)
++...+..+.... |+.+ .....|...+|...|..|++|..|.+|.+|.-..
T Consensus 390 sg~nyQ~~~t~vq---------pGSl----~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 390 SGHNYQRGQTIVQ---------PGSL----ESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred cCccccccccccc---------CCcc----ccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 8865443322111 1222 1122599999999999999999999999997655
No 36
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.4e-24 Score=228.41 Aligned_cols=250 Identities=16% Similarity=0.212 Sum_probs=206.7
Q ss_pred cCcccccchhhhccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCC
Q 005502 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105 (693)
Q Consensus 26 ~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~ 105 (693)
+...+++|....+. ..+.++-..-+|.+..|-+--+++++|++|..|+||++.++..++.+ ..|.+-|.+++.+|.
T Consensus 33 ynG~V~IWnyetqt--mVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~F-eAH~DyIR~iavHPt- 108 (794)
T KOG0276|consen 33 YNGDVQIWNYETQT--MVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTF-EAHSDYIRSIAVHPT- 108 (794)
T ss_pred ecCeeEEEecccce--eeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEe-eccccceeeeeecCC-
Confidence 55788888754443 56777777889999999999999999999999999999999999999 799999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCC
Q 005502 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP 185 (693)
Q Consensus 106 ~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~ 185 (693)
..+++|++.|-+|++||.... +.+.+++.+|+..|.+++|+|.+++.|+|++-|++|++|.+.++.+.
T Consensus 109 -~P~vLtsSDDm~iKlW~we~~---------wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~n-- 176 (794)
T KOG0276|consen 109 -LPYVLTSSDDMTIKLWDWENE---------WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPN-- 176 (794)
T ss_pred -CCeEEecCCccEEEEeeccCc---------eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCc--
Confidence 589999999999999999853 47789999999999999999999999999999999999999876522
Q ss_pred CCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCC-CcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcc
Q 005502 186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV 264 (693)
Q Consensus 186 ~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~-~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~ 264 (693)
....+|...|+|+.+-|-+ .-+|++|+.|..|+|||..+. .|+
T Consensus 177 -----------------------fTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-------------~CV 220 (794)
T KOG0276|consen 177 -----------------------FTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-------------SCV 220 (794)
T ss_pred -----------------------eeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH-------------HHH
Confidence 2233677889999998732 239999999999999999875 577
Q ss_pred cccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCc
Q 005502 265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNG 335 (693)
Q Consensus 265 ~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~g 335 (693)
++. .||.. .|..+.|+|.-..+++|+.||+|+||+-.+-+.........+....++..+..+.
T Consensus 221 ~TL-------eGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~ 283 (794)
T KOG0276|consen 221 QTL-------EGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGK 283 (794)
T ss_pred HHh-------hcccc-cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCe
Confidence 776 66766 5999999999999999999999999998885544443333333333333344333
No 37
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.92 E-value=1.3e-23 Score=225.52 Aligned_cols=249 Identities=19% Similarity=0.327 Sum_probs=205.3
Q ss_pred hccccceEEeccCCCcEEEEEECCCCCEEEEEeCC-CcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeC
Q 005502 37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDD-THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG 115 (693)
Q Consensus 37 i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~D-g~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~ 115 (693)
+..+.+++.|.--..+|..+.|+..|.+||.|+.. |.+.||++.+...+... ++|...|++++++|+ |+++|||+.
T Consensus 294 lP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQ-QgH~~~i~~l~YSpD--gq~iaTG~e 370 (893)
T KOG0291|consen 294 LPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQ-QGHSDRITSLAYSPD--GQLIATGAE 370 (893)
T ss_pred cCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeec-cccccceeeEEECCC--CcEEEeccC
Confidence 45566777787777899999999999999998764 79999999988888777 799999999999999 799999999
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccce
Q 005502 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (693)
Q Consensus 116 Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~ 195 (693)
||.|+|||...+ -+..+|..|+..|+.+.|+. .++.+++++-||+||.||+......
T Consensus 371 DgKVKvWn~~Sg----------fC~vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNf------------ 427 (893)
T KOG0291|consen 371 DGKVKVWNTQSG----------FCFVTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNF------------ 427 (893)
T ss_pred CCcEEEEeccCc----------eEEEEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeeccccee------------
Confidence 999999999964 57899999999999999998 7788999999999999999765421
Q ss_pred EEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCc-EEEEecCCCCCCcccccCCCCCCcccccccCcccc
Q 005502 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF-ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 274 (693)
Q Consensus 196 ~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~-I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (693)
+.+. . .......|++..|. |.++.+|+.|.. |.+|++.+++.+..+
T Consensus 428 ----------RTft-~-P~p~QfscvavD~s-GelV~AG~~d~F~IfvWS~qTGqllDiL-------------------- 474 (893)
T KOG0291|consen 428 ----------RTFT-S-PEPIQFSCVAVDPS-GELVCAGAQDSFEIFVWSVQTGQLLDIL-------------------- 474 (893)
T ss_pred ----------eeec-C-CCceeeeEEEEcCC-CCEEEeeccceEEEEEEEeecCeeeehh--------------------
Confidence 0010 1 11346789999997 688888888764 899999998755433
Q ss_pred CCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCcccccCCcccc
Q 005502 275 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDF 345 (693)
Q Consensus 275 ~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~ 345 (693)
.||.+ +|.+++|+|.|..|++++.|.+|++||+-......-.+...+....++|+|+.+.++.....++.
T Consensus 475 sGHEg-PVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqI 544 (893)
T KOG0291|consen 475 SGHEG-PVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQI 544 (893)
T ss_pred cCCCC-cceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceE
Confidence 56776 79999999999999999999999999999864444444555667788999999888877766544
No 38
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.92 E-value=2.8e-24 Score=209.36 Aligned_cols=219 Identities=21% Similarity=0.326 Sum_probs=179.3
Q ss_pred EEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC------------------CcEEEEeccCCCcceEEEEEeeCC
Q 005502 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS------------------RKLLHSIETGHSANVFCTKFVPET 105 (693)
Q Consensus 44 ~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~------------------~~~~~~l~~~h~~~I~sl~f~p~~ 105 (693)
..+..|.+++.+.+|++||.++||||.|..|+|.|++. .-.++++ ..|...|.++.|+|.
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTl-YDH~devn~l~FHPr- 183 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTL-YDHVDEVNDLDFHPR- 183 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeeh-hhccCcccceeecch-
Confidence 45678999999999999999999999999999999872 1246666 689999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCC
Q 005502 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP 185 (693)
Q Consensus 106 ~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~ 185 (693)
..+|++|+.|++|++||+...+.+ +..+.++ ...+|.+|.|+| .+.+|+.|....++++||+.+.+...
T Consensus 184 -e~ILiS~srD~tvKlFDfsK~saK-------rA~K~~q-d~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~Qcfv- 252 (430)
T KOG0640|consen 184 -ETILISGSRDNTVKLFDFSKTSAK-------RAFKVFQ-DTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFV- 252 (430)
T ss_pred -hheEEeccCCCeEEEEecccHHHH-------HHHHHhh-ccceeeeEeecC-CCceEEEecCCCceeEEeccceeEee-
Confidence 699999999999999999864321 1233333 467899999999 77888899999999999999865220
Q ss_pred CCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCccc
Q 005502 186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN 265 (693)
Q Consensus 186 ~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~ 265 (693)
+......|...|+++.+++. +.+.++|+.||.|+|||--+. .|+.
T Consensus 253 ---------------------sanPd~qht~ai~~V~Ys~t-~~lYvTaSkDG~IklwDGVS~-------------rCv~ 297 (430)
T KOG0640|consen 253 ---------------------SANPDDQHTGAITQVRYSST-GSLYVTASKDGAIKLWDGVSN-------------RCVR 297 (430)
T ss_pred ---------------------ecCcccccccceeEEEecCC-ccEEEEeccCCcEEeeccccH-------------HHHH
Confidence 01112357789999999997 789999999999999997654 6777
Q ss_pred ccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceE
Q 005502 266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM 316 (693)
Q Consensus 266 ~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~ 316 (693)
+|... |.+..|.+..|..+|+||++++.|..|+||.+.++.....
T Consensus 298 t~~~A------H~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~ 342 (430)
T KOG0640|consen 298 TIGNA------HGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKE 342 (430)
T ss_pred HHHhh------cCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEE
Confidence 77544 4445799999999999999999999999999999654333
No 39
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=3.8e-23 Score=229.68 Aligned_cols=245 Identities=14% Similarity=0.209 Sum_probs=172.0
Q ss_pred cccccchhhhccccceEEeccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEECCCCc--------EEEEeccCCCcceEE
Q 005502 28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRK--------LLHSIETGHSANVFC 98 (693)
Q Consensus 28 ~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~-g~~LaSgs~Dg~I~IWd~~~~~--------~~~~l~~~h~~~I~s 98 (693)
..+++|+.. +..++..|.+|.+.|++++|+|+ +.+||||+.|++|+|||+.++. ++..+ .+|...|.+
T Consensus 54 gvI~L~~~~--r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L-~gH~~~V~s 130 (568)
T PTZ00420 54 GAIRLENQM--RKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCIL-KGHKKKISI 130 (568)
T ss_pred eEEEeeecC--CCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEe-ecCCCcEEE
Confidence 345555422 33567889999999999999996 7899999999999999997542 23345 689999999
Q ss_pred EEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 005502 99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR 178 (693)
Q Consensus 99 l~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr 178 (693)
++|+|+. ..+|++|+.|++|+|||++.. ..+..+. |...|.+++|+| ++.+|++++.|+.|++||++
T Consensus 131 Vaf~P~g-~~iLaSgS~DgtIrIWDl~tg----------~~~~~i~-~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~R 197 (568)
T PTZ00420 131 IDWNPMN-YYIMCSSGFDSFVNIWDIENE----------KRAFQIN-MPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPR 197 (568)
T ss_pred EEECCCC-CeEEEEEeCCCeEEEEECCCC----------cEEEEEe-cCCcEEEEEECC-CCCEEEEEecCCEEEEEECC
Confidence 9999984 346789999999999999864 2234444 567899999999 67899999999999999999
Q ss_pred CCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCcc-----ceEEEEEcCCCCcEEEEEeCCC----cEEEEecCCC-
Q 005502 179 QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL-----SLKSCDISSTRPHLLLVGGSDA----FARLYDRRML- 248 (693)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~-----~v~sl~~sp~~~~~Latgs~Dg----~I~lwD~r~~- 248 (693)
++.... .+ ..|.. .+....|+++ +.+|++++.|+ .|+|||++..
T Consensus 198 sg~~i~-----------tl--------------~gH~g~~~s~~v~~~~fs~d-~~~IlTtG~d~~~~R~VkLWDlr~~~ 251 (568)
T PTZ00420 198 KQEIAS-----------SF--------------HIHDGGKNTKNIWIDGLGGD-DNYILSTGFSKNNMREMKLWDLKNTT 251 (568)
T ss_pred CCcEEE-----------EE--------------ecccCCceeEEEEeeeEcCC-CCEEEEEEcCCCCccEEEEEECCCCC
Confidence 875320 00 11221 2233456676 56777777664 7999999963
Q ss_pred CCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceE-EeecCCCceeE
Q 005502 249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM-RYTVGDASKIM 327 (693)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~-~~~~~~~~~~~ 327 (693)
.++..... ..+.+ .+......++|.++++|++|+.|++|++..+....+ .+....+.+.+
T Consensus 252 ~pl~~~~l------------------d~~~~-~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~ 312 (568)
T PTZ00420 252 SALVTMSI------------------DNASA-PLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSF 312 (568)
T ss_pred CceEEEEe------------------cCCcc-ceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccccCCCccce
Confidence 22211100 11111 234444566789999999999999999987532211 23344556677
Q ss_pred EeccCC
Q 005502 328 SFTPTL 333 (693)
Q Consensus 328 ~~~p~~ 333 (693)
+|.|..
T Consensus 313 ~f~Pkr 318 (568)
T PTZ00420 313 GFLPKQ 318 (568)
T ss_pred EEcccc
Confidence 777753
No 40
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.4e-24 Score=206.56 Aligned_cols=227 Identities=19% Similarity=0.295 Sum_probs=180.4
Q ss_pred CCCcEEEEEECCC-CCEEEEEeCCCcEEEEECCCC-cEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCC
Q 005502 49 HQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 126 (693)
Q Consensus 49 H~~~V~~l~~s~~-g~~LaSgs~Dg~I~IWd~~~~-~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~ 126 (693)
-.+++..++|+++ .+.+++++.||.++|||+... ++++.+ +.|...|.++.|++.. ...+++++-|++|++|+...
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~-kEH~~EV~Svdwn~~~-r~~~ltsSWD~TiKLW~~~r 136 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKF-KEHKREVYSVDWNTVR-RRIFLTSSWDGTIKLWDPNR 136 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHH-HhhhhheEEecccccc-ceeEEeeccCCceEeecCCC
Confidence 3678999999995 568999999999999996533 467777 7899999999999985 67888999999999999987
Q ss_pred CCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCcee
Q 005502 127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206 (693)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 206 (693)
+ ..+.++.+|...|...+|+|..+++|++++.||++++||+|...+.
T Consensus 137 ~----------~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~----------------------- 183 (311)
T KOG0277|consen 137 P----------NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKF----------------------- 183 (311)
T ss_pred C----------cceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCce-----------------------
Confidence 5 5688999999999999999999999999999999999999875321
Q ss_pred eecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEE
Q 005502 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT 286 (693)
Q Consensus 207 ~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~ 286 (693)
+. .+.|...|.|+.|+..+.++|+||+.|+.||+||+|+.+.. +..+ .+|. ..|..|+
T Consensus 184 -~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p------------l~eL-------~gh~-~AVRkvk 241 (311)
T KOG0277|consen 184 -MS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTP------------LFEL-------NGHG-LAVRKVK 241 (311)
T ss_pred -eE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhcccc------------ceee-------cCCc-eEEEEEe
Confidence 11 33566789999999988999999999999999999986411 1111 2343 3799999
Q ss_pred EcCCC-CEEEEEecCCcEEEEECCCCCcc-eEEeecCCCceeEEeccC
Q 005502 287 FSPNG-EEVLLSYSGEHVYLMDVNHAGGR-AMRYTVGDASKIMSFTPT 332 (693)
Q Consensus 287 fspdg-~~L~sgs~Dg~V~lwDl~~~~~~-~~~~~~~~~~~~~~~~p~ 332 (693)
|||.. ..|++++.|-+++|||...+... .....+.+-...+.|++.
T Consensus 242 ~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~ 289 (311)
T KOG0277|consen 242 FSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLF 289 (311)
T ss_pred cCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccc
Confidence 99975 56778888999999999864322 222233333444556554
No 41
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.92 E-value=4e-23 Score=211.35 Aligned_cols=229 Identities=25% Similarity=0.390 Sum_probs=184.4
Q ss_pred eEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 005502 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (693)
Q Consensus 43 ~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vw 122 (693)
.++|++|.++|++++|+|++++|++++.||.|++|++.+++....+ ..|...+..+.|+|+ +++|++++.|+.|++|
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~-~~~~~~i~~~~~~~~--~~~l~~~~~~~~i~i~ 78 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTL-KGHTGPVRDVAASAD--GTYLASGSSDKTIRLW 78 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEE-ecCCcceeEEEECCC--CCEEEEEcCCCeEEEE
Confidence 3567899999999999999999999999999999999988877777 689999999999998 5899999999999999
Q ss_pred EcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccC
Q 005502 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (693)
Q Consensus 123 dl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~ 202 (693)
++... .....+..|...|.++.|+| ++.++++++.||.|++||+++.+..
T Consensus 79 ~~~~~----------~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~------------------- 128 (289)
T cd00200 79 DLETG----------ECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCL------------------- 128 (289)
T ss_pred EcCcc----------cceEEEeccCCcEEEEEEcC-CCCEEEEecCCCeEEEEECCCcEEE-------------------
Confidence 99864 34667778889999999999 4678888888999999999854311
Q ss_pred CceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccce
Q 005502 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL 282 (693)
Q Consensus 203 ~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V 282 (693)
.....+...+.++.|+|+ +.++++++.|+.|++||++..+....+ ..|.. .|
T Consensus 129 ------~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~d~~~~~~~~~~--------------------~~~~~-~i 180 (289)
T cd00200 129 ------TTLRGHTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLRTGKCVATL--------------------TGHTG-EV 180 (289)
T ss_pred ------EEeccCCCcEEEEEEcCc-CCEEEEEcCCCcEEEEEccccccceeE--------------------ecCcc-cc
Confidence 111134567999999997 678888888999999999865433222 11222 58
Q ss_pred EEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccC
Q 005502 283 THVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT 332 (693)
Q Consensus 283 ~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~ 332 (693)
+++.|+|+++.|++++.++.|++||+.++........+...+..+.|+|.
T Consensus 181 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 230 (289)
T cd00200 181 NSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPD 230 (289)
T ss_pred ceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCC
Confidence 99999999999999999999999999985543333244556666777775
No 42
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.1e-22 Score=200.15 Aligned_cols=263 Identities=19% Similarity=0.232 Sum_probs=202.5
Q ss_pred ccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeC--
Q 005502 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-- 115 (693)
Q Consensus 38 ~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~-- 115 (693)
+++++.+.|+.-.+.|++|.|+++|.+|++++.|-.++|||..++++++++ ..+.-.|-.++|.... ..++.++.
T Consensus 2 ~s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti-~skkyG~~~~~Fth~~--~~~i~sStk~ 78 (311)
T KOG1446|consen 2 RSFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTI-NSKKYGVDLACFTHHS--NTVIHSSTKE 78 (311)
T ss_pred cccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEe-ecccccccEEEEecCC--ceEEEccCCC
Confidence 456777888888899999999999999999999999999999999999999 5677789999998873 56666665
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCC-------CCC
Q 005502 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP-------AGS 188 (693)
Q Consensus 116 Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~-------~~~ 188 (693)
|.+||.-++..+ +.++.+.+|...|.+|+.+| .+..|+|++.|++|++||+|..+.... +..
T Consensus 79 d~tIryLsl~dN----------kylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~A 147 (311)
T KOG1446|consen 79 DDTIRYLSLHDN----------KYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAA 147 (311)
T ss_pred CCceEEEEeecC----------ceEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCCccee
Confidence 889999999875 66999999999999999999 558899999999999999996653311 100
Q ss_pred CC----------cccceEEEeccCCceeeecCC---CCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccc
Q 005502 189 SH----------QECRNILLDLRCGAKRSLADP---PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ 255 (693)
Q Consensus 189 ~~----------~~~~~~l~~~~~~~~~~l~~~---~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~ 255 (693)
-. ......++|++.-...+.... .......+.+.|+|+ |++|+.+...+.+++.|.-++....++.
T Consensus 148 fDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~d-GK~iLlsT~~s~~~~lDAf~G~~~~tfs 226 (311)
T KOG1446|consen 148 FDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPD-GKSILLSTNASFIYLLDAFDGTVKSTFS 226 (311)
T ss_pred ECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCC-CCEEEEEeCCCcEEEEEccCCcEeeeEe
Confidence 00 111455677765433222221 134667899999997 7999999999999999998887555443
Q ss_pred cCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEee-cCCCceeEEeccCC
Q 005502 256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYT-VGDASKIMSFTPTL 333 (693)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~-~~~~~~~~~~~p~~ 333 (693)
..... .. --...+|+|+++++++|+.||+|++|++.++........ ...+...+.|+|-.
T Consensus 227 ~~~~~-----------------~~-~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~ 287 (311)
T KOG1446|consen 227 GYPNA-----------------GN-LPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRY 287 (311)
T ss_pred eccCC-----------------CC-cceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCce
Confidence 21110 11 125789999999999999999999999999887766665 35566666677754
No 43
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=1.7e-23 Score=199.99 Aligned_cols=263 Identities=17% Similarity=0.274 Sum_probs=204.0
Q ss_pred EEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEe-ccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 005502 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI-ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (693)
Q Consensus 44 ~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l-~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vw 122 (693)
.++++|...|.+++|+.+|..||+|+.|+++.||+++..+....+ ..+|.+.|-.++|.|.+ ..+|++++.|.+|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~-~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKH-PDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCC-CcceEEecCCceEEEE
Confidence 668899999999999999999999999999999999987655433 25899999999999987 6899999999999999
Q ss_pred EcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCc------ccceE
Q 005502 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ------ECRNI 196 (693)
Q Consensus 123 dl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~------~~~~~ 196 (693)
|++.. +++..... +..-.-+.|+| .+.+++.++.|..|.+.|.|+.+.......... ...+-
T Consensus 93 d~r~~----------k~~~~i~~-~~eni~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd 160 (313)
T KOG1407|consen 93 DIRSG----------KCTARIET-KGENINITWSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSND 160 (313)
T ss_pred EeccC----------cEEEEeec-cCcceEEEEcC-CCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCC
Confidence 99965 45555543 33445578999 668888999999999999998765421110000 00111
Q ss_pred EEeccCC----------ceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccc
Q 005502 197 LLDLRCG----------AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266 (693)
Q Consensus 197 l~~~~~~----------~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~ 266 (693)
++-+.+| ..+++.....|.....||.|+|+ |++||+|+.|..+.+||+..+ .|++.
T Consensus 161 ~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~-GryfA~GsADAlvSLWD~~EL-------------iC~R~ 226 (313)
T KOG1407|consen 161 LFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPD-GRYFATGSADALVSLWDVDEL-------------ICERC 226 (313)
T ss_pred EEEEecCCceEEEEeccccccccccccCCcceEEEEECCC-CceEeeccccceeeccChhHh-------------hhhee
Confidence 2222222 22344555678888999999997 799999999999999999865 56655
Q ss_pred cccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCcccccCCc
Q 005502 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPI 342 (693)
Q Consensus 267 ~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~ 342 (693)
|.. -..+|..|.||.+|++|++++.|..|-|=++.+|. ......+..+...++|+|...-+++....
T Consensus 227 isR--------ldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd-~~~eI~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 227 ISR--------LDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGD-RVWEIPCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ecc--------ccCceEEEEeccCcceeeccCccceEEeEecccCC-eEEEeeccCCceeEEecCCCceeeEEecC
Confidence 522 23379999999999999999999999999999975 45555667778889999998888776543
No 44
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.92 E-value=5.1e-24 Score=219.11 Aligned_cols=247 Identities=15% Similarity=0.193 Sum_probs=188.7
Q ss_pred CCcCcccccchhhhccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEee
Q 005502 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103 (693)
Q Consensus 24 ~~~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p 103 (693)
...+..+.+|...- ..++++++.||..+|.+++|+++|..++|+|.|+.|++||+++|+++..+.. ...++|++|+|
T Consensus 233 ~gmD~~vklW~vy~-~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~--~~~~~cvkf~p 309 (503)
T KOG0282|consen 233 GGMDGLVKLWNVYD-DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL--DKVPTCVKFHP 309 (503)
T ss_pred cCCCceEEEEEEec-CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec--CCCceeeecCC
Confidence 45667788886544 7889999999999999999999999999999999999999999999999943 34689999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCC
Q 005502 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (693)
Q Consensus 104 ~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~ 183 (693)
+. .+.|++|+.|+.|+.||++.+ +.++.+..|-+.|..|.|-+ ++..|+++++|++|++|+.+.+-..
T Consensus 310 d~-~n~fl~G~sd~ki~~wDiRs~----------kvvqeYd~hLg~i~~i~F~~-~g~rFissSDdks~riWe~~~~v~i 377 (503)
T KOG0282|consen 310 DN-QNIFLVGGSDKKIRQWDIRSG----------KVVQEYDRHLGAILDITFVD-EGRRFISSSDDKSVRIWENRIPVPI 377 (503)
T ss_pred CC-CcEEEEecCCCcEEEEeccch----------HHHHHHHhhhhheeeeEEcc-CCceEeeeccCccEEEEEcCCCccc
Confidence 95 589999999999999999975 66888999999999999999 7788999999999999999876533
Q ss_pred CCCC----------CCCccc----------ceEEEeccCCc-eeeecCCCCCc--cceEEEEEcCCCCcEEEEEeCCCcE
Q 005502 184 PPAG----------SSHQEC----------RNILLDLRCGA-KRSLADPPKQT--LSLKSCDISSTRPHLLLVGGSDAFA 240 (693)
Q Consensus 184 ~~~~----------~~~~~~----------~~~l~~~~~~~-~~~l~~~~~~~--~~v~sl~~sp~~~~~Latgs~Dg~I 240 (693)
..+. ..+... ...++.....- ...-....+|. ..-..+.|||+ +.+|++|+.||.+
T Consensus 378 k~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD-G~~l~SGdsdG~v 456 (503)
T KOG0282|consen 378 KNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD-GRTLCSGDSDGKV 456 (503)
T ss_pred hhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCC-CCeEEeecCCccE
Confidence 1111 001100 01111110000 00001112222 23456899998 7899999999999
Q ss_pred EEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCC-CEEEEEecCCcEEEEE
Q 005502 241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG-EEVLLSYSGEHVYLMD 307 (693)
Q Consensus 241 ~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg-~~L~sgs~Dg~V~lwD 307 (693)
.+||.++.+.+..+ ..|.. +++.+.|+|.. ..|++++-||.|++||
T Consensus 457 ~~wdwkt~kl~~~l--------------------kah~~-~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 457 NFWDWKTTKLVSKL--------------------KAHDQ-PCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEeechhhhhhhcc--------------------ccCCc-ceEEEEecCCCcceeEecccCceeEecC
Confidence 99999987655433 23433 79999999965 4788888899999996
No 45
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.91 E-value=4.4e-23 Score=205.59 Aligned_cols=263 Identities=14% Similarity=0.173 Sum_probs=202.5
Q ss_pred hccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCC
Q 005502 37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD 116 (693)
Q Consensus 37 i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~D 116 (693)
+.......++.||.+.|+|+.|+.+|.+||||..+|.|+||...++.....+. .-...|.=++|+|. +.+|+.|+.|
T Consensus 93 ~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~-~e~~dieWl~WHp~--a~illAG~~D 169 (399)
T KOG0296|consen 93 ISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD-QEVEDIEWLKWHPR--AHILLAGSTD 169 (399)
T ss_pred ccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee-cccCceEEEEeccc--ccEEEeecCC
Confidence 44555788999999999999999999999999999999999999998888883 45567888999997 6999999999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCC---------
Q 005502 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG--------- 187 (693)
Q Consensus 117 g~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~--------- 187 (693)
|.|.+|.+... ...+.+.+|..++++=.|.| +++.++++..||+|++|+..++++.....
T Consensus 170 GsvWmw~ip~~----------~~~kv~~Gh~~~ct~G~f~p-dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~ 238 (399)
T KOG0296|consen 170 GSVWMWQIPSQ----------ALCKVMSGHNSPCTCGEFIP-DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPC 238 (399)
T ss_pred CcEEEEECCCc----------ceeeEecCCCCCcccccccC-CCceEEEEecCceEEEEecCCCceeEEecccccCcCCc
Confidence 99999999864 34788999999999999999 57888899999999999999987542221
Q ss_pred -----------CCCcccceEEEeccCCceeeecCC------CCCccceEEEEEcCCC--CcEEEEEeCCCcEEEEecCCC
Q 005502 188 -----------SSHQECRNILLDLRCGAKRSLADP------PKQTLSLKSCDISSTR--PHLLLVGGSDAFARLYDRRML 248 (693)
Q Consensus 188 -----------~~~~~~~~~l~~~~~~~~~~l~~~------~~~~~~v~sl~~sp~~--~~~Latgs~Dg~I~lwD~r~~ 248 (693)
.+..++...+....+++....... +.+...+.|+.+.|.. =.++|+|+.||+|.|||+...
T Consensus 239 ~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~ 318 (399)
T KOG0296|consen 239 ISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS 318 (399)
T ss_pred cccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc
Confidence 122233333444444443332221 1233334444444432 247899999999999999876
Q ss_pred CCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEE
Q 005502 249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMS 328 (693)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~ 328 (693)
++...++ |.. +|+.+.|-+ ..+|++++.+|.|+.||.+++...-....|...+-.++
T Consensus 319 ~~R~~c~---------------------he~-~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ 375 (399)
T KOG0296|consen 319 TLRHICE---------------------HED-GVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFA 375 (399)
T ss_pred hhheecc---------------------CCC-ceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEE
Confidence 5433221 333 599999999 88999999999999999999887777777777788888
Q ss_pred eccCCCcc
Q 005502 329 FTPTLNGL 336 (693)
Q Consensus 329 ~~p~~~g~ 336 (693)
++|..+.+
T Consensus 376 ls~~~~~v 383 (399)
T KOG0296|consen 376 LSPQKRLV 383 (399)
T ss_pred EcCCCcEE
Confidence 88865443
No 46
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.91 E-value=3.9e-23 Score=211.79 Aligned_cols=238 Identities=16% Similarity=0.223 Sum_probs=193.5
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCC
Q 005502 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (693)
Q Consensus 50 ~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~ 129 (693)
+..|++|+|+.+|++||+|+.||.++||+. ++..+.++ ..|.++|++++|+.. |.+|++++.|+++.+||...+
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl-~~HkgPI~slKWnk~--G~yilS~~vD~ttilwd~~~g-- 308 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTL-GQHKGPIFSLKWNKK--GTYILSGGVDGTTILWDAHTG-- 308 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEec-Cchhhhhh-hccCCceEEEEEcCC--CCEEEeccCCccEEEEeccCc--
Confidence 367999999999999999999999999997 46777788 789999999999988 799999999999999999865
Q ss_pred CCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeec
Q 005502 130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA 209 (693)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~ 209 (693)
...+.+.-|+.+-..+.|- +..-|++++.||.|+++.+....+. .
T Consensus 309 --------~~~q~f~~~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~~P~-------------------------~ 353 (524)
T KOG0273|consen 309 --------TVKQQFEFHSAPALDVDWQ--SNDEFATSSTDGCIHVCKVGEDRPV-------------------------K 353 (524)
T ss_pred --------eEEEeeeeccCCccceEEe--cCceEeecCCCceEEEEEecCCCcc-------------------------e
Confidence 4466677788877778886 4568999999999999998765532 2
Q ss_pred CCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcC
Q 005502 210 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP 289 (693)
Q Consensus 210 ~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fsp 289 (693)
...+|..+|.++.|+|. +.+|++++.|++++||.+.... |...+ +.|.. .|..+.|+|
T Consensus 354 t~~GH~g~V~alk~n~t-g~LLaS~SdD~TlkiWs~~~~~-------------~~~~l-------~~Hsk-ei~t~~wsp 411 (524)
T KOG0273|consen 354 TFIGHHGEVNALKWNPT-GSLLASCSDDGTLKIWSMGQSN-------------SVHDL-------QAHSK-EIYTIKWSP 411 (524)
T ss_pred eeecccCceEEEEECCC-CceEEEecCCCeeEeeecCCCc-------------chhhh-------hhhcc-ceeeEeecC
Confidence 22357889999999997 7899999999999999976542 22222 34544 588999998
Q ss_pred CC---------CEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCcccccCCccccccccc
Q 005502 290 NG---------EEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNI 350 (693)
Q Consensus 290 dg---------~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~ 350 (693)
+| ..|++++.|++|++||+..+.+...+..+..++-.++|+|...-++.....+.+-+...
T Consensus 412 ~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~ 481 (524)
T KOG0273|consen 412 TGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWST 481 (524)
T ss_pred CCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccc
Confidence 64 57899999999999999998776777688889999999998777665555554444433
No 47
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=5.2e-23 Score=197.81 Aligned_cols=229 Identities=17% Similarity=0.271 Sum_probs=185.4
Q ss_pred CCcCcccccchhhhccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC---cEEEEeccCCCcceEEEE
Q 005502 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR---KLLHSIETGHSANVFCTK 100 (693)
Q Consensus 24 ~~~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~---~~~~~l~~~h~~~I~sl~ 100 (693)
..|+.++.+|...-..++++.+|+||...|.|++|+++|.+|||++.|+.|-||..... .+...+ ++|+..|.-+.
T Consensus 79 aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL-~~HtqDVK~V~ 157 (312)
T KOG0645|consen 79 ASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVL-QEHTQDVKHVI 157 (312)
T ss_pred eeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeee-ccccccccEEE
Confidence 45778888888888999999999999999999999999999999999999999998744 466667 89999999999
Q ss_pred EeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 005502 101 FVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180 (693)
Q Consensus 101 f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~ 180 (693)
|+|. ..+|++++.|.+|++|+-... ..+.++.++.+|...|.+++|+| .+..|++++.|++|+||-..+.
T Consensus 158 WHPt--~dlL~S~SYDnTIk~~~~~~d-------ddW~c~~tl~g~~~TVW~~~F~~-~G~rl~s~sdD~tv~Iw~~~~~ 227 (312)
T KOG0645|consen 158 WHPT--EDLLFSCSYDNTIKVYRDEDD-------DDWECVQTLDGHENTVWSLAFDN-IGSRLVSCSDDGTVSIWRLYTD 227 (312)
T ss_pred EcCC--cceeEEeccCCeEEEEeecCC-------CCeeEEEEecCccceEEEEEecC-CCceEEEecCCcceEeeeeccC
Confidence 9998 589999999999999987731 23577999999999999999999 6688999999999999986642
Q ss_pred CCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCC
Q 005502 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP 260 (693)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~ 260 (693)
-+ ..|...++.++|. + ..|++++.|+.|++|..........
T Consensus 228 ~~-----------------------------~~~sr~~Y~v~W~-~--~~IaS~ggD~~i~lf~~s~~~d~p~------- 268 (312)
T KOG0645|consen 228 LS-----------------------------GMHSRALYDVPWD-N--GVIASGGGDDAIRLFKESDSPDEPS------- 268 (312)
T ss_pred cc-----------------------------hhcccceEeeeec-c--cceEeccCCCEEEEEEecCCCCCch-------
Confidence 11 1244578889998 3 4899999999999998764211111
Q ss_pred CCcccccccCccccCCCCccceEEEEEcCC-CCEEEEEecCCcEEEEECC
Q 005502 261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPN-GEEVLLSYSGEHVYLMDVN 309 (693)
Q Consensus 261 ~~~~~~~~~~~~~~~~h~~~~V~~v~fspd-g~~L~sgs~Dg~V~lwDl~ 309 (693)
...+ ....+.|.. .|++|.|.|. ...|++|+.||.|++|.+.
T Consensus 269 ---~~l~---~~~~~aHe~-dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 269 ---WNLL---AKKEGAHEV-DVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ---HHHH---Hhhhccccc-ccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 1111 001133444 6999999995 6789999999999999874
No 48
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=9.2e-24 Score=222.31 Aligned_cols=237 Identities=14% Similarity=0.285 Sum_probs=204.3
Q ss_pred cceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 005502 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (693)
Q Consensus 41 ~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~ 120 (693)
...++|..|+..|.++.++|....++++-.+|.|.||+.++...++.+ .-..-+|.+.+|.+. -+.+++|+.|..||
T Consensus 4 ~~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksf-eV~~~PvRa~kfiaR--knWiv~GsDD~~Ir 80 (794)
T KOG0276|consen 4 DFKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSF-EVSEVPVRAAKFIAR--KNWIVTGSDDMQIR 80 (794)
T ss_pred hhhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeee-eecccchhhheeeec--cceEEEecCCceEE
Confidence 344556679999999999999999999999999999999999999999 566789999999998 48999999999999
Q ss_pred EEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEec
Q 005502 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (693)
Q Consensus 121 vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~ 200 (693)
||+.++. +.++.|.+|.+.|++|+.||+.|. ++|+|.|-+|++||....-.|
T Consensus 81 Vfnynt~----------ekV~~FeAH~DyIR~iavHPt~P~-vLtsSDDm~iKlW~we~~wa~----------------- 132 (794)
T KOG0276|consen 81 VFNYNTG----------EKVKTFEAHSDYIRSIAVHPTLPY-VLTSSDDMTIKLWDWENEWAC----------------- 132 (794)
T ss_pred EEecccc----------eeeEEeeccccceeeeeecCCCCe-EEecCCccEEEEeeccCceee-----------------
Confidence 9999976 679999999999999999997764 559999999999999875433
Q ss_pred cCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCcc
Q 005502 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 280 (693)
Q Consensus 201 ~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 280 (693)
.....+|...|.+++|+|.+++.+|+++.|++|++|.+.+..+..++ .+|..
T Consensus 133 -------~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl--------------------~gHek- 184 (794)
T KOG0276|consen 133 -------EQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTL--------------------EGHEK- 184 (794)
T ss_pred -------eeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceee--------------------ecccc-
Confidence 22344678899999999999999999999999999999875443332 45655
Q ss_pred ceEEEEEcCCC--CEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCcc
Q 005502 281 HLTHVTFSPNG--EEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGL 336 (693)
Q Consensus 281 ~V~~v~fspdg--~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~g~ 336 (693)
.|++|.|-+-| .+|++|+.|..|++||.++..+...+..|.+.+..++|+|..+-+
T Consensus 185 GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpii 242 (794)
T KOG0276|consen 185 GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPII 242 (794)
T ss_pred CcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEE
Confidence 59999998765 799999999999999999988888888888899999999986554
No 49
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.91 E-value=4e-22 Score=203.95 Aligned_cols=246 Identities=22% Similarity=0.335 Sum_probs=194.1
Q ss_pred CcccccchhhhccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCC
Q 005502 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS 106 (693)
Q Consensus 27 ~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~ 106 (693)
+..+.+|+. ...+....+.+|...|.++.|++++++|++++.|+.|++|++.+++.+..+ ..|...|.++.|+|+
T Consensus 30 ~g~i~i~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~-~~~~~~i~~~~~~~~-- 104 (289)
T cd00200 30 DGTIKVWDL--ETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTL-TGHTSYVSSVAFSPD-- 104 (289)
T ss_pred CcEEEEEEe--eCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEE-eccCCcEEEEEEcCC--
Confidence 456666653 334467788999999999999999999999999999999999988888877 688889999999998
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCC
Q 005502 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA 186 (693)
Q Consensus 107 ~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~ 186 (693)
+.++++++.|+.|++||+... .....+..|...|.+++|+| ++.++++++.||.|++||++..+..
T Consensus 105 ~~~~~~~~~~~~i~~~~~~~~----------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~--- 170 (289)
T cd00200 105 GRILSSSSRDKTIKVWDVETG----------KCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKCV--- 170 (289)
T ss_pred CCEEEEecCCCeEEEEECCCc----------EEEEEeccCCCcEEEEEEcC-cCCEEEEEcCCCcEEEEEccccccc---
Confidence 578888888999999999853 44666778999999999999 4678888888999999999865422
Q ss_pred CCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccc
Q 005502 187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266 (693)
Q Consensus 187 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~ 266 (693)
.. ...+...+.++.|+|+ +..+++++.|+.|++||++..+.+..+
T Consensus 171 --------~~--------------~~~~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~d~~~~~~~~~~------------ 215 (289)
T cd00200 171 --------AT--------------LTGHTGEVNSVAFSPD-GEKLLSSSSDGTIKLWDLSTGKCLGTL------------ 215 (289)
T ss_pred --------ee--------------EecCccccceEEECCC-cCEEEEecCCCcEEEEECCCCceecch------------
Confidence 00 1133457899999997 578888888999999999875443222
Q ss_pred cccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCc
Q 005502 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNG 335 (693)
Q Consensus 267 ~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~g 335 (693)
..|.. .|.++.|+|++.++++++.++.|++||+.++........+...+..++|+|..+.
T Consensus 216 --------~~~~~-~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 275 (289)
T cd00200 216 --------RGHEN-GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKR 275 (289)
T ss_pred --------hhcCC-ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCE
Confidence 11222 5999999999888888888999999999986554444445556777888886443
No 50
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.91 E-value=7.8e-24 Score=213.74 Aligned_cols=254 Identities=22% Similarity=0.300 Sum_probs=203.2
Q ss_pred CCCcCcccccchhhhccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEe
Q 005502 23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102 (693)
Q Consensus 23 ~~~~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~ 102 (693)
....+..+++|..+..+...+.+|.|-.++|+++.|.++++.+++++.|+.+++|++...+...++ .+|.+.|+++.|.
T Consensus 192 tgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TL-sGHtdkVt~ak~~ 270 (459)
T KOG0288|consen 192 TGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTL-SGHTDKVTAAKFK 270 (459)
T ss_pred hcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhh-cccccceeeehhh
Confidence 456778889999888888999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred eCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCC
Q 005502 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (693)
Q Consensus 103 p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~ 182 (693)
... ..+++|+.|.+|++||+... .+.+++. ....+..|... +..++||-.|++||+||+|+...
T Consensus 271 ~~~--~~vVsgs~DRtiK~WDl~k~----------~C~kt~l-~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~ 334 (459)
T KOG0288|consen 271 LSH--SRVVSGSADRTIKLWDLQKA----------YCSKTVL-PGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADK 334 (459)
T ss_pred ccc--cceeeccccchhhhhhhhhh----------heecccc-ccccccceEec---ceeeeecccccceEEEeccCCce
Confidence 873 44999999999999999853 2333332 23556677765 46788999999999999998763
Q ss_pred CCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCC
Q 005502 183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP 262 (693)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~ 262 (693)
. ...+. ...|+++..+++ +..|++++.|.++.++|+|+......+..
T Consensus 335 ~-------------------------~sv~~-gg~vtSl~ls~~-g~~lLsssRDdtl~viDlRt~eI~~~~sA------ 381 (459)
T KOG0288|consen 335 T-------------------------RSVPL-GGRVTSLDLSMD-GLELLSSSRDDTLKVIDLRTKEIRQTFSA------ 381 (459)
T ss_pred e-------------------------eEeec-CcceeeEeeccC-CeEEeeecCCCceeeeecccccEEEEeec------
Confidence 2 11112 237999999997 67788889999999999998653332211
Q ss_pred cccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCC--ceeEEeccCCCccc
Q 005502 263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDA--SKIMSFTPTLNGLE 337 (693)
Q Consensus 263 ~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~--~~~~~~~p~~~g~~ 337 (693)
..+ ....-++.+.|||++.|+++|+.||.|+||++.+++...+.-....+ +..+.|+|...++.
T Consensus 382 -~g~----------k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Ll 447 (459)
T KOG0288|consen 382 -EGF----------KCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLL 447 (459)
T ss_pred -ccc----------ccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhh
Confidence 011 11123889999999999999999999999999998877776655554 67788988766653
No 51
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.91 E-value=2.3e-23 Score=215.10 Aligned_cols=260 Identities=17% Similarity=0.199 Sum_probs=188.8
Q ss_pred ccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC----cEEEEeccCCCcceEEEEEeeCCCCCEEEEEeC
Q 005502 40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR----KLLHSIETGHSANVFCTKFVPETSDELVVSGAG 115 (693)
Q Consensus 40 l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~----~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~ 115 (693)
+..+..|++|+..|.+|++.|.|..|+|||.|.+|+.||+..+ +..+.|.......|.+++|+|+ +..|++.+.
T Consensus 157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~T--g~~iLvvsg 234 (641)
T KOG0772|consen 157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVT--GDQILVVSG 234 (641)
T ss_pred ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCC--CCeEEEEec
Confidence 4567788999999999999999999999999999999999754 2334454445567999999998 567777777
Q ss_pred CCcEEEEEcCCCCCC-CC-CCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCccc
Q 005502 116 DAEVRLFNLSRFSGR-GL-DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 193 (693)
Q Consensus 116 Dg~V~vwdl~~~~~~-~~-~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~ 193 (693)
....+|+|-.-.... +. ...-+.-+..-++|...+++.+|+|.+...|+|++.||++|+||+...+..
T Consensus 235 ~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q---------- 304 (641)
T KOG0772|consen 235 SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ---------- 304 (641)
T ss_pred CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh----------
Confidence 788999986632110 00 011112234557899999999999999999999999999999999876522
Q ss_pred ceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccc
Q 005502 194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 273 (693)
Q Consensus 194 ~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (693)
..++..... .+....+++|+|+|+ +.+||+|+.||.|.+|+.+..... ....+...|..
T Consensus 305 ~qVik~k~~---------~g~Rv~~tsC~~nrd-g~~iAagc~DGSIQ~W~~~~~~v~-----------p~~~vk~AH~~ 363 (641)
T KOG0772|consen 305 LQVIKTKPA---------GGKRVPVTSCAWNRD-GKLIAAGCLDGSIQIWDKGSRTVR-----------PVMKVKDAHLP 363 (641)
T ss_pred eeEEeeccC---------CCcccCceeeecCCC-cchhhhcccCCceeeeecCCcccc-----------cceEeeeccCC
Confidence 122221111 134568899999998 688999999999999998754211 01111122222
Q ss_pred cCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEee---cCCCceeEEeccCCCccc
Q 005502 274 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYT---VGDASKIMSFTPTLNGLE 337 (693)
Q Consensus 274 ~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~---~~~~~~~~~~~p~~~g~~ 337 (693)
+..|++|+||++|++|++-+.|+++++|||+..+++..... ...+....+|+|+..-+.
T Consensus 364 -----g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~ 425 (641)
T KOG0772|consen 364 -----GQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLIL 425 (641)
T ss_pred -----CCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEE
Confidence 12599999999999999999999999999999775544332 223455678898865543
No 52
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.91 E-value=2.5e-22 Score=238.31 Aligned_cols=228 Identities=16% Similarity=0.211 Sum_probs=173.0
Q ss_pred eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC----c----EEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 005502 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR----K----LLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (693)
Q Consensus 46 l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~----~----~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg 117 (693)
+.+|.+.|++++|+|+|++||||+.|+.|+||++.+. . ....+ .+...|.+++|+|.. +.+|++++.|+
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~-~~~las~~~Dg 555 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL--ASRSKLSGICWNSYI-KSQVASSNFEG 555 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe--cccCceeeEEeccCC-CCEEEEEeCCC
Confidence 4469999999999999999999999999999997532 1 22233 345689999999864 67999999999
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEE
Q 005502 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (693)
Q Consensus 118 ~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l 197 (693)
+|++||+... ..+..+.+|...|++++|+|.++.+|+||+.||+|++||++++... ..+
T Consensus 556 ~v~lWd~~~~----------~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~-----------~~~ 614 (793)
T PLN00181 556 VVQVWDVARS----------QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI-----------GTI 614 (793)
T ss_pred eEEEEECCCC----------eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE-----------EEE
Confidence 9999999864 4567788999999999999877889999999999999999875421 111
Q ss_pred EeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCC
Q 005502 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 277 (693)
Q Consensus 198 ~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 277 (693)
. +...+.++.|++..+.+|++|+.|+.|++||+++... .+..+ .+|
T Consensus 615 -----------~----~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~------------~~~~~-------~~h 660 (793)
T PLN00181 615 -----------K----TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL------------PLCTM-------IGH 660 (793)
T ss_pred -----------e----cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc------------cceEe-------cCC
Confidence 0 1235789999776689999999999999999986431 11111 234
Q ss_pred CccceEEEEEcCCCCEEEEEecCCcEEEEECCCCC------cceEEeecCCCceeEEeccCC
Q 005502 278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG------GRAMRYTVGDASKIMSFTPTL 333 (693)
Q Consensus 278 ~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~------~~~~~~~~~~~~~~~~~~p~~ 333 (693)
.. .|+++.|. ++.+|++++.|+.|++||+..+. ....+..+...+..++|+|..
T Consensus 661 ~~-~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~ 720 (793)
T PLN00181 661 SK-TVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSD 720 (793)
T ss_pred CC-CEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCC
Confidence 44 59999997 78899999999999999998531 111222333344556666653
No 53
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.91 E-value=2.5e-23 Score=203.52 Aligned_cols=241 Identities=19% Similarity=0.240 Sum_probs=203.4
Q ss_pred EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEc
Q 005502 45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124 (693)
Q Consensus 45 ~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl 124 (693)
.|.-|..+|.||+|+.|...||+|+.||.|+||.+.+|.|++.+...|+..|+|+.|+.+ +..+++++.|.+||++-+
T Consensus 258 ~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD--~SqiLS~sfD~tvRiHGl 335 (508)
T KOG0275|consen 258 NFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRD--NSQILSASFDQTVRIHGL 335 (508)
T ss_pred ceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccC--cchhhcccccceEEEecc
Confidence 355688999999999999999999999999999999999999998899999999999998 588999999999999999
Q ss_pred CCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCc
Q 005502 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (693)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (693)
..+ ++++.+.+|++.|+...|.+ +++.+++++.||+|++|+..+.+.. ..
T Consensus 336 KSG----------K~LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~KtteC~-----------~T-------- 385 (508)
T KOG0275|consen 336 KSG----------KCLKEFRGHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKTTECL-----------ST-------- 385 (508)
T ss_pred ccc----------hhHHHhcCccccccceEEcC-CCCeEEEecCCccEEEecCcchhhh-----------hh--------
Confidence 865 67899999999999999999 7788889999999999999886533 11
Q ss_pred eeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEE
Q 005502 205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH 284 (693)
Q Consensus 205 ~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~ 284 (693)
+.+.+...+|.++-.-|.++..++++....+|+|.++.- + .++.|..+. ..+....+
T Consensus 386 ----fk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG-Q-------------vVrsfsSGk-----REgGdFi~ 442 (508)
T KOG0275|consen 386 ----FKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG-Q-------------VVRSFSSGK-----REGGDFIN 442 (508)
T ss_pred ----ccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc-e-------------EEeeeccCC-----ccCCceEE
Confidence 122234567889999998899999999999999998863 2 233332111 22234678
Q ss_pred EEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCcccccC
Q 005502 285 VTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQP 340 (693)
Q Consensus 285 v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~ 340 (693)
++.||.|.++++.+.|+.+|.|.+.+++.......+...+..++.+|..+.++.+.
T Consensus 443 ~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYs 498 (508)
T KOG0275|consen 443 AILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYS 498 (508)
T ss_pred EEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhc
Confidence 89999999999999999999999999998888888888888899999888776544
No 54
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.91 E-value=5.1e-23 Score=210.90 Aligned_cols=231 Identities=19% Similarity=0.289 Sum_probs=184.2
Q ss_pred cccceEEeccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEECCCCcE------EEEeccCCCcceEEEEEeeCCCCCEEE
Q 005502 39 RLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKL------LHSIETGHSANVFCTKFVPETSDELVV 111 (693)
Q Consensus 39 ~l~~~~~l~gH~~~V~~l~~s~~-g~~LaSgs~Dg~I~IWd~~~~~~------~~~l~~~h~~~I~sl~f~p~~~~~~l~ 111 (693)
...+...|.||++.=..|+|++. .-.|++|+.|++|++||+..... ...+..+|...|..++|+|.. ..+|+
T Consensus 166 ~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h-~~lF~ 244 (422)
T KOG0264|consen 166 ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLH-EDLFG 244 (422)
T ss_pred cCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccc-hhhhe
Confidence 45566789999998889999995 44799999999999999975322 233447999999999999986 78999
Q ss_pred EEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCc
Q 005502 112 SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ 191 (693)
Q Consensus 112 sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~ 191 (693)
+++.|+.+.|||++... .++.....+|...|.+++|+|.+..+|||||.|++|.+||+|....+
T Consensus 245 sv~dd~~L~iwD~R~~~--------~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~-------- 308 (422)
T KOG0264|consen 245 SVGDDGKLMIWDTRSNT--------SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKP-------- 308 (422)
T ss_pred eecCCCeEEEEEcCCCC--------CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccC--------
Confidence 99999999999999531 15677888999999999999999999999999999999999987532
Q ss_pred ccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCC-CCCCcccccccC
Q 005502 192 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRM-SPPPCVNYFCPM 270 (693)
Q Consensus 192 ~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~-~~~~~~~~~~~~ 270 (693)
+....+|...|.++.|+|.....||+++.|+.+.+||+.......+..... .|+. +...
T Consensus 309 ----------------lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppE-llF~--- 368 (422)
T KOG0264|consen 309 ----------------LHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPE-LLFI--- 368 (422)
T ss_pred ----------------ceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcc-eeEE---
Confidence 344557888999999999999999999999999999998654333211111 2221 1111
Q ss_pred ccccCCCCccceEEEEEcCCCCEEE-EEecCCcEEEEECCC
Q 005502 271 HLSEHGRSSLHLTHVTFSPNGEEVL-LSYSGEHVYLMDVNH 310 (693)
Q Consensus 271 ~~~~~~h~~~~V~~v~fspdg~~L~-sgs~Dg~V~lwDl~~ 310 (693)
-.||.. .|..+.|+|+..+++ +.+.|+.+.||.+..
T Consensus 369 ---HgGH~~-kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 369 ---HGGHTA-KVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ---ecCccc-ccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 145665 599999999998765 555699999999875
No 55
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=2e-23 Score=207.61 Aligned_cols=237 Identities=18% Similarity=0.279 Sum_probs=186.1
Q ss_pred eEEeccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 005502 43 ERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 121 (693)
Q Consensus 43 ~~~l~gH~~~V~~l~~s~~g-~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~v 121 (693)
+..|.||.+.|.||+=+|.. ..+|||+.||.|+|||+.+..++.++ ..|.+.|..|++... .++|++.|.+|+.
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f-~AH~G~V~Gi~v~~~----~~~tvgdDKtvK~ 133 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTF-KAHEGLVRGICVTQT----SFFTVGDDKTVKQ 133 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhee-ecccCceeeEEeccc----ceEEecCCcceee
Confidence 45679999999999999976 78999999999999999999999999 799999999999863 6889999999999
Q ss_pred EEcCCCCCC----------------------------CCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEE
Q 005502 122 FNLSRFSGR----------------------------GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR 173 (693)
Q Consensus 122 wdl~~~~~~----------------------------~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~ 173 (693)
|-+..+... ..+.....|+..+.--...|.++.|+|....+|++|+.|+.|.
T Consensus 134 wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIv 213 (433)
T KOG0268|consen 134 WKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIV 213 (433)
T ss_pred eeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceE
Confidence 985432100 0122233566677767788999999999999999999999999
Q ss_pred EEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcc
Q 005502 174 QHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS 253 (693)
Q Consensus 174 iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~ 253 (693)
+||+|+..+. ..++..+++ +.|+|+| ....+++|+.|..++.||+|.++.
T Consensus 214 LyD~R~~~Pl----------~KVi~~mRT----------------N~IswnP-eafnF~~a~ED~nlY~~DmR~l~~--- 263 (433)
T KOG0268|consen 214 LYDLRQASPL----------KKVILTMRT----------------NTICWNP-EAFNFVAANEDHNLYTYDMRNLSR--- 263 (433)
T ss_pred EEecccCCcc----------ceeeeeccc----------------cceecCc-cccceeeccccccceehhhhhhcc---
Confidence 9999998755 234444443 4689999 588999999999999999997641
Q ss_pred cccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeE--Eecc
Q 005502 254 CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIM--SFTP 331 (693)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~--~~~p 331 (693)
.+..+ .+|.+ .|++|.|||.|+.+++|+.|.+|+||.++.+.. .-.|.......++ .|+-
T Consensus 264 ---------p~~v~-------~dhvs-AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~S-RdiYhtkRMq~V~~Vk~S~ 325 (433)
T KOG0268|consen 264 ---------PLNVH-------KDHVS-AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHS-RDIYHTKRMQHVFCVKYSM 325 (433)
T ss_pred ---------cchhh-------cccce-eEEEeccCCCcchhccccccceEEEeecCCCcc-hhhhhHhhhheeeEEEEec
Confidence 12222 34554 699999999999999999999999999998653 3334334444443 3544
Q ss_pred C
Q 005502 332 T 332 (693)
Q Consensus 332 ~ 332 (693)
+
T Consensus 326 D 326 (433)
T KOG0268|consen 326 D 326 (433)
T ss_pred c
Confidence 3
No 56
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.90 E-value=5.3e-22 Score=235.52 Aligned_cols=238 Identities=20% Similarity=0.281 Sum_probs=180.5
Q ss_pred CcccccchhhhccccceEEeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCC
Q 005502 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105 (693)
Q Consensus 27 ~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~-~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~ 105 (693)
+..+++|+. .+.+.+..+.+|.+.|++++|+| ++.+|+||+.|++|+|||+.++..+..+ . +...|.++.|.+..
T Consensus 554 Dg~v~lWd~--~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~-~-~~~~v~~v~~~~~~ 629 (793)
T PLN00181 554 EGVVQVWDV--ARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI-K-TKANICCVQFPSES 629 (793)
T ss_pred CCeEEEEEC--CCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE-e-cCCCeEEEEEeCCC
Confidence 566677763 44567888999999999999997 7899999999999999999999888888 3 34689999997654
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCC
Q 005502 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP 185 (693)
Q Consensus 106 ~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~ 185 (693)
+.+|++|+.|+.|++||++... .++..+.+|...|.++.|. ++.+|++++.|++|++||++......
T Consensus 630 -g~~latgs~dg~I~iwD~~~~~---------~~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~~~~~- 696 (793)
T PLN00181 630 -GRSLAFGSADHKVYYYDLRNPK---------LPLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMSISGI- 696 (793)
T ss_pred -CCEEEEEeCCCeEEEEECCCCC---------ccceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCCcccc-
Confidence 7899999999999999998532 2456777899999999997 45689999999999999998642100
Q ss_pred CCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCccc
Q 005502 186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN 265 (693)
Q Consensus 186 ~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~ 265 (693)
....+....+|...+.+++|+|+ +.+|++|+.|+.|++|+.....++..+...... .+.
T Consensus 697 ------------------~~~~l~~~~gh~~~i~~v~~s~~-~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~--~~~ 755 (793)
T PLN00181 697 ------------------NETPLHSFMGHTNVKNFVGLSVS-DGYIATGSETNEVFVYHKAFPMPVLSYKFKTID--PVS 755 (793)
T ss_pred ------------------CCcceEEEcCCCCCeeEEEEcCC-CCEEEEEeCCCEEEEEECCCCCceEEEecccCC--ccc
Confidence 00012223356667889999997 689999999999999998765443222110000 000
Q ss_pred ccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEEC
Q 005502 266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV 308 (693)
Q Consensus 266 ~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl 308 (693)
. .....+ ...|.+++|+|++..|++|+.||.|+||++
T Consensus 756 ----~-~~~~~~-~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 756 ----G-LEVDDA-SQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred ----c-cccCCC-CcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 0 000112 226999999999999999999999999997
No 57
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=6.3e-23 Score=204.32 Aligned_cols=244 Identities=16% Similarity=0.246 Sum_probs=206.0
Q ss_pred cchhhhccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEE
Q 005502 32 MHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV 111 (693)
Q Consensus 32 ~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~ 111 (693)
.....+.+..+.+.+.||..+|+.+-|+|+-.++++++.|++|++||+.++++...+ .||...|++|.|+.. |.+++
T Consensus 90 ~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~L-rGHt~sv~di~~~a~--Gk~l~ 166 (406)
T KOG0295|consen 90 TPALWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSL-RGHTDSVFDISFDAS--GKYLA 166 (406)
T ss_pred ChhhcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhh-hccccceeEEEEecC--ccEEE
Confidence 344578888888999999999999999999999999999999999999999998888 799999999999988 79999
Q ss_pred EEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCc
Q 005502 112 SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ 191 (693)
Q Consensus 112 sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~ 191 (693)
+++.|-.+++||.... ..+++...+|...|.++.|-| .+.+|+|++.|.+|+.|++.++-
T Consensus 167 tcSsDl~~~LWd~~~~---------~~c~ks~~gh~h~vS~V~f~P-~gd~ilS~srD~tik~We~~tg~---------- 226 (406)
T KOG0295|consen 167 TCSSDLSAKLWDFDTF---------FRCIKSLIGHEHGVSSVFFLP-LGDHILSCSRDNTIKAWECDTGY---------- 226 (406)
T ss_pred ecCCccchhheeHHHH---------HHHHHHhcCcccceeeEEEEe-cCCeeeecccccceeEEecccce----------
Confidence 9999999999999863 156788889999999999999 56899999999999999998864
Q ss_pred ccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCc
Q 005502 192 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 271 (693)
Q Consensus 192 ~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (693)
.+..+++|...|..+..+.+ +.++|+++.|.+|++|-+.+.+ |...+
T Consensus 227 ---------------cv~t~~~h~ewvr~v~v~~D-Gti~As~s~dqtl~vW~~~t~~-------------~k~~l---- 273 (406)
T KOG0295|consen 227 ---------------CVKTFPGHSEWVRMVRVNQD-GTIIASCSNDQTLRVWVVATKQ-------------CKAEL---- 273 (406)
T ss_pred ---------------eEEeccCchHhEEEEEecCC-eeEEEecCCCceEEEEEeccch-------------hhhhh----
Confidence 23444566779999999997 7999999999999999988763 22221
Q ss_pred cccCCCCccceEEEEEcCC---------------CCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCc
Q 005502 272 LSEHGRSSLHLTHVTFSPN---------------GEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNG 335 (693)
Q Consensus 272 ~~~~~h~~~~V~~v~fspd---------------g~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~g 335 (693)
..|.. +|-+++|.|. ++++.+++.|++|++||+.++.+...+..++.-++.++|+|..+-
T Consensus 274 ---R~hEh-~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gky 348 (406)
T KOG0295|consen 274 ---REHEH-PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKY 348 (406)
T ss_pred ---hcccc-ceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeE
Confidence 22332 4667777652 368999999999999999998877777888888899999986543
No 58
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.90 E-value=9e-24 Score=200.46 Aligned_cols=236 Identities=21% Similarity=0.295 Sum_probs=188.3
Q ss_pred cccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 005502 39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 118 (693)
Q Consensus 39 ~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~ 118 (693)
...-+.+|.||.++|++...+.+..+-|+++.|-+.+|||.-++..++++ .|.--|..++|+.++ ++|+||+.+..
T Consensus 48 tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf--~hkhivk~~af~~ds--~~lltgg~ekl 123 (334)
T KOG0278|consen 48 TGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSF--EHKHIVKAVAFSQDS--NYLLTGGQEKL 123 (334)
T ss_pred CCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhh--hhhheeeeEEecccc--hhhhccchHHH
Confidence 44558899999999999999999999999999999999999999999998 477789999999995 89999999999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCC--------
Q 005502 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSH-------- 190 (693)
Q Consensus 119 V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~-------- 190 (693)
+||||++... .+...+.+|++.|+.+.|.. ..+.|+|++.|++||+||.|++..+..+...+
T Consensus 124 lrvfdln~p~---------App~E~~ghtg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs 193 (334)
T KOG0278|consen 124 LRVFDLNRPK---------APPKEISGHTGGIRTVLWCH-EDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVS 193 (334)
T ss_pred hhhhhccCCC---------CCchhhcCCCCcceeEEEec-cCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeec
Confidence 9999999753 56778889999999999998 66788899999999999999987553222111
Q ss_pred cccc---------eEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCC
Q 005502 191 QECR---------NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP 261 (693)
Q Consensus 191 ~~~~---------~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~ 261 (693)
++.. ..+|+..+-.... ...-...|.+.+.+|.. ..+++|+.|..++.||..++..+..+
T Consensus 194 ~dG~ilTia~gssV~Fwdaksf~~lK---s~k~P~nV~SASL~P~k-~~fVaGged~~~~kfDy~TgeEi~~~------- 262 (334)
T KOG0278|consen 194 QDGRILTIAYGSSVKFWDAKSFGLLK---SYKMPCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTGEEIGSY------- 262 (334)
T ss_pred cCCCEEEEecCceeEEecccccccee---eccCccccccccccCCC-ceEEecCcceEEEEEeccCCceeeec-------
Confidence 1111 1223222211111 11223568889999985 89999999999999999988654321
Q ss_pred CcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCC
Q 005502 262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 262 ~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~ 312 (693)
.++|.+ +|.+|.|+|+|...++|+.||+|+||.+..++
T Consensus 263 ------------nkgh~g-pVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 263 ------------NKGHFG-PVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ------------ccCCCC-ceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 145555 79999999999999999999999999988754
No 59
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.90 E-value=1.6e-22 Score=207.35 Aligned_cols=217 Identities=19% Similarity=0.331 Sum_probs=174.5
Q ss_pred cCCCcEEEEEECCC-CCEEEEEeCCCcEEEEECCCCcEE----------EEeccCCCcceEEEEEeeCCCCCEEEEEeCC
Q 005502 48 GHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLL----------HSIETGHSANVFCTKFVPETSDELVVSGAGD 116 (693)
Q Consensus 48 gH~~~V~~l~~s~~-g~~LaSgs~Dg~I~IWd~~~~~~~----------~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~D 116 (693)
-|.+.|+.+.+-|. ..++||++..+.|.|||+.+..-. ..+ .+|...-++|+|++.. .-.|++|+.|
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L-~gH~~eg~glsWn~~~-~g~Lls~~~d 199 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRL-KGHEKEGYGLSWNRQQ-EGTLLSGSDD 199 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEE-Eeeccccccccccccc-ceeEeeccCC
Confidence 49999999999995 568888899999999998754211 144 6899888999999986 5689999999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceE
Q 005502 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (693)
Q Consensus 117 g~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~ 196 (693)
++|++||+...... .....+...+.+|...|..++|+|....+|++++.|+.+.|||+|+....
T Consensus 200 ~~i~lwdi~~~~~~---~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~------------- 263 (422)
T KOG0264|consen 200 HTICLWDINAESKE---DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSK------------- 263 (422)
T ss_pred CcEEEEeccccccC---CccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCC-------------
Confidence 99999999864321 22246788899999999999999999999999999999999999973211
Q ss_pred EEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCC
Q 005502 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (693)
Q Consensus 197 l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (693)
.......|...|.|++|+|.+..+||+|+.|++|.+||+|++.. ++..+ .+
T Consensus 264 ----------~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~------------~lh~~-------e~ 314 (422)
T KOG0264|consen 264 ----------PSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK------------PLHTF-------EG 314 (422)
T ss_pred ----------CcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc------------Cceec-------cC
Confidence 11122367889999999999999999999999999999998642 22222 34
Q ss_pred CCccceEEEEEcCCCC-EEEEEecCCcEEEEECCCCC
Q 005502 277 RSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 277 h~~~~V~~v~fspdg~-~L~sgs~Dg~V~lwDl~~~~ 312 (693)
|.. .|..|.|||... .|++++.|+.+.+||+..-.
T Consensus 315 H~d-ev~~V~WSPh~etvLASSg~D~rl~vWDls~ig 350 (422)
T KOG0264|consen 315 HED-EVFQVEWSPHNETVLASSGTDRRLNVWDLSRIG 350 (422)
T ss_pred CCc-ceEEEEeCCCCCceeEecccCCcEEEEeccccc
Confidence 555 699999999765 56677779999999998744
No 60
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=4e-22 Score=194.34 Aligned_cols=263 Identities=14% Similarity=0.136 Sum_probs=187.8
Q ss_pred cCCCcEEEEEECC-CCCEEEEEeCCCcEEEEECCC-CcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcC
Q 005502 48 GHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSS-RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (693)
Q Consensus 48 gH~~~V~~l~~s~-~g~~LaSgs~Dg~I~IWd~~~-~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~ 125 (693)
...+.|.+|+||| ...+|+.||+|++|++|++.. +..+.+-...|.++|++++|+.+ |..+++|+.|+.+++||+.
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsdd--gskVf~g~~Dk~~k~wDL~ 102 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDD--GSKVFSGGCDKQAKLWDLA 102 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccC--CceEEeeccCCceEEEEcc
Confidence 3568899999999 566777999999999999986 45554444689999999999998 6999999999999999999
Q ss_pred CCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCc--EEEEEeCCCcEEEEeCCCCCCCCCCCC---------------
Q 005502 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH--VVWSASEDGTLRQHDFRQGSSCPPAGS--------------- 188 (693)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~--~l~Sgs~Dg~V~iwDlr~~~~~~~~~~--------------- 188 (693)
.+ .+..+..|..+|+.+.|-+ +.. +|+|||.|++|+.||+|...++..+..
T Consensus 103 S~-----------Q~~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~v 170 (347)
T KOG0647|consen 103 SG-----------QVSQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAV 170 (347)
T ss_pred CC-----------CeeeeeecccceeEEEEec-CCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeE
Confidence 64 2667788999999999987 444 899999999999999998775422111
Q ss_pred -CCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCccccc
Q 005502 189 -SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYF 267 (693)
Q Consensus 189 -~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~ 267 (693)
...+....++.+..+....-.....-...+.|+++.+++ ...+.|+-+|.+-|..+....+...+. -+|-+.-
T Consensus 171 Vata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~-~~~alGsiEGrv~iq~id~~~~~~nFt-----FkCHR~~ 244 (347)
T KOG0647|consen 171 VATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDK-DGFALGSIEGRVAIQYIDDPNPKDNFT-----FKCHRST 244 (347)
T ss_pred EEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecC-CceEeeeecceEEEEecCCCCccCcee-----EEEeccC
Confidence 111222344555443322111111134468899999974 566999999999999988754322221 0222111
Q ss_pred ccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCc
Q 005502 268 CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNG 335 (693)
Q Consensus 268 ~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~g 335 (693)
.+ .. ..-+.|++|+|+|.-..|++.++||++.+||-+...+......+..++...+|+-+..-
T Consensus 245 ~~----~~-~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~i 307 (347)
T KOG0647|consen 245 NS----VN-DDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSI 307 (347)
T ss_pred CC----CC-CceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCE
Confidence 00 00 11347999999999999999999999999998875444444555666666666655443
No 61
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.89 E-value=1.2e-23 Score=207.49 Aligned_cols=215 Identities=16% Similarity=0.297 Sum_probs=178.6
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCC
Q 005502 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 128 (693)
Q Consensus 49 H~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~ 128 (693)
..+.|.|+.+. ...+++|..|.+|+|||..+..++..+ .||++.|.|+.|.. +.|++|+.|.+|+|||++++
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L-~GHtGSVLCLqyd~----rviisGSSDsTvrvWDv~tg- 267 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKIL-TGHTGSVLCLQYDE----RVIVSGSSDSTVRVWDVNTG- 267 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhh-hcCCCcEEeeeccc----eEEEecCCCceEEEEeccCC-
Confidence 45789999985 457999999999999999998899888 89999999999974 69999999999999999976
Q ss_pred CCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeee
Q 005502 129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 208 (693)
Q Consensus 129 ~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 208 (693)
+++.++-.|...|..+.|+. .+++|++.|.++.+||+..+.. ..+..+
T Consensus 268 ---------e~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~--------it~rrV------------ 315 (499)
T KOG0281|consen 268 ---------EPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTD--------ITLRRV------------ 315 (499)
T ss_pred ---------chhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchH--------HHHHHH------------
Confidence 77899999999999999964 5888999999999999987541 112222
Q ss_pred cCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEc
Q 005502 209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS 288 (693)
Q Consensus 209 ~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fs 288 (693)
..+|...|+.+.|+. +++++++.|.+|++|++.+..-+ .++ ++|.. .|-++.
T Consensus 316 --LvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~efv-------------Rtl-------~gHkR-GIAClQ-- 367 (499)
T KOG0281|consen 316 --LVGHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTCEFV-------------RTL-------NGHKR-GIACLQ-- 367 (499)
T ss_pred --Hhhhhhheeeecccc---ceEEEecCCceEEEEeccceeee-------------hhh-------hcccc-cceehh--
Confidence 236778899999975 49999999999999999987543 333 44543 354444
Q ss_pred CCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEecc
Q 005502 289 PNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP 331 (693)
Q Consensus 289 pdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p 331 (693)
..|+++++|+.|.+|++||+..|.+..++.++.+.++.+.|..
T Consensus 368 Yr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~ 410 (499)
T KOG0281|consen 368 YRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN 410 (499)
T ss_pred ccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC
Confidence 3789999999999999999999999898888888888877754
No 62
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.89 E-value=2.8e-22 Score=200.67 Aligned_cols=203 Identities=21% Similarity=0.305 Sum_probs=165.0
Q ss_pred ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC-------------------------CcEEEEeccCCCcceEEEEE
Q 005502 47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS-------------------------RKLLHSIETGHSANVFCTKF 101 (693)
Q Consensus 47 ~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~-------------------------~~~~~~l~~~h~~~I~sl~f 101 (693)
+||...|-+++..++|..++|||.|..|.||+..+ +.++.++ .||+.+|.+|.|
T Consensus 190 ~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl-~GHt~~Vs~V~w 268 (423)
T KOG0313|consen 190 RGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTL-EGHTEPVSSVVW 268 (423)
T ss_pred cccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEe-cccccceeeEEE
Confidence 49999999999999999999999999999999321 1244455 799999999999
Q ss_pred eeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCC
Q 005502 102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS 181 (693)
Q Consensus 102 ~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~ 181 (693)
++. ..+++++.|.+|++||+.... .+..+. -...+.+++.+| ..++|++|+.|..|++||.|++.
T Consensus 269 ~d~---~v~yS~SwDHTIk~WDletg~----------~~~~~~-~~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~ 333 (423)
T KOG0313|consen 269 SDA---TVIYSVSWDHTIKVWDLETGG----------LKSTLT-TNKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGD 333 (423)
T ss_pred cCC---CceEeecccceEEEEEeeccc----------ceeeee-cCcceeEeeccc-ccceeeecCCCCceeecCCCCCC
Confidence 985 689999999999999999752 233333 356789999999 77899999999999999999874
Q ss_pred CCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC-CCcccccCCCC
Q 005502 182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSP 260 (693)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~-~~~~~~~~~~~ 260 (693)
.. .......+|...|.++.|+|.+..+|++|+.|+++++||+|+.+ ++..+
T Consensus 334 gs----------------------~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI------ 385 (423)
T KOG0313|consen 334 GS----------------------VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI------ 385 (423)
T ss_pred Cc----------------------eeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee------
Confidence 21 11223346788999999999999999999999999999999765 33222
Q ss_pred CCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECC
Q 005502 261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 309 (693)
Q Consensus 261 ~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~ 309 (693)
.+|.. .|.++.|+. +..|++|+.|.+|+++.-.
T Consensus 386 --------------~~h~D-Kvl~vdW~~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 386 --------------AGHND-KVLSVDWNE-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred --------------ccCCc-eEEEEeccC-CceEEeccCcceEEEeccc
Confidence 34544 699999974 5579999999999998644
No 63
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=2.5e-22 Score=207.14 Aligned_cols=245 Identities=21% Similarity=0.311 Sum_probs=188.7
Q ss_pred cccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 005502 39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 118 (693)
Q Consensus 39 ~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~ 118 (693)
.....+++.-..+.|.+++|-.||.+||.|...|.|+|||+.+...++.+ .+|..+|..+.|+|.. +.+|++|+.|+.
T Consensus 57 ~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~-~ah~apv~~~~f~~~d-~t~l~s~sDd~v 134 (487)
T KOG0310|consen 57 TRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQL-YAHQAPVHVTKFSPQD-NTMLVSGSDDKV 134 (487)
T ss_pred hhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHH-hhccCceeEEEecccC-CeEEEecCCCce
Confidence 33445556667789999999999999999999999999997765566677 7999999999999985 789999999999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEE
Q 005502 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (693)
Q Consensus 119 V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~ 198 (693)
+++||+.+. .....+.+|++.|.+.+|+|.++++++|||.||+|++||+|.... .+.
T Consensus 135 ~k~~d~s~a----------~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~-------------~v~ 191 (487)
T KOG0310|consen 135 VKYWDLSTA----------YVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS-------------RVV 191 (487)
T ss_pred EEEEEcCCc----------EEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc-------------eeE
Confidence 999999964 224578899999999999999999999999999999999998641 111
Q ss_pred eccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCC
Q 005502 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (693)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 278 (693)
.+ .|..+|-++.+-|. +.++|+++ ...|++||+-++..+- ..+ ..|.
T Consensus 192 el------------nhg~pVe~vl~lps-gs~iasAg-Gn~vkVWDl~~G~qll------------~~~-------~~H~ 238 (487)
T KOG0310|consen 192 EL------------NHGCPVESVLALPS-GSLIASAG-GNSVKVWDLTTGGQLL------------TSM-------FNHN 238 (487)
T ss_pred Ee------------cCCCceeeEEEcCC-CCEEEEcC-CCeEEEEEecCCceeh------------hhh-------hccc
Confidence 11 45678899999996 56777765 4689999998654221 111 1133
Q ss_pred ccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCcccccCCcc
Q 005502 279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIH 343 (693)
Q Consensus 279 ~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~ 343 (693)
. .|||+.+..++..|++++-|+.|++||+.+.+ ......-..++-.++.+|+..-+......+
T Consensus 239 K-tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~K-vv~s~~~~~pvLsiavs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 239 K-TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYK-VVHSWKYPGPVLSIAVSPDDQTVVIGMSNG 301 (487)
T ss_pred c-eEEEEEeecCCceEeecccccceEEEEccceE-EEEeeecccceeeEEecCCCceEEEecccc
Confidence 3 69999999999999999999999999977732 222223345566677777544444433333
No 64
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.89 E-value=6e-22 Score=193.02 Aligned_cols=231 Identities=20% Similarity=0.302 Sum_probs=173.7
Q ss_pred ceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 005502 42 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 121 (693)
Q Consensus 42 ~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~v 121 (693)
-...++||.++|..+.|.++++.|+|++.|++|+.||.++++++..+ .+|..-|.++.-+.-+ ..++.||+.|+++++
T Consensus 82 N~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~-k~h~~~vNs~~p~rrg-~~lv~SgsdD~t~kl 159 (338)
T KOG0265|consen 82 NFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKH-KGHTSFVNSLDPSRRG-PQLVCSGSDDGTLKL 159 (338)
T ss_pred ceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehh-ccccceeeecCccccC-CeEEEecCCCceEEE
Confidence 34567899999999999999999999999999999999999999999 7999999998843332 468899999999999
Q ss_pred EEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCC------------------
Q 005502 122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC------------------ 183 (693)
Q Consensus 122 wdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~------------------ 183 (693)
||++.. .+++++. ....++++.|.. .+..+.+|+-|+.|++||+|.....
T Consensus 160 ~D~R~k----------~~~~t~~-~kyqltAv~f~d-~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~ 227 (338)
T KOG0265|consen 160 WDIRKK----------EAIKTFE-NKYQLTAVGFKD-TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRY 227 (338)
T ss_pred Eeeccc----------chhhccc-cceeEEEEEecc-cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccC
Confidence 999964 4455554 356788899987 4455669999999999999776532
Q ss_pred -CCCCCCCcccceEEEeccCCce----eeecCCCCCcc--ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCccccc
Q 005502 184 -PPAGSSHQECRNILLDLRCGAK----RSLADPPKQTL--SLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK 256 (693)
Q Consensus 184 -~~~~~~~~~~~~~l~~~~~~~~----~~l~~~~~~~~--~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~ 256 (693)
....+..+++...+|+.+.-.. ..+.....|.. ....++|+|+ +..+.+|+.|..|++||.....
T Consensus 228 gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~-~~~i~ags~dr~vyvwd~~~r~------- 299 (338)
T KOG0265|consen 228 GSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN-GTKITAGSADRFVYVWDTTSRR------- 299 (338)
T ss_pred CCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCC-CCccccccccceEEEeeccccc-------
Confidence 1122233445555666543211 12222222333 2456889997 7899999999999999987632
Q ss_pred CCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEEC
Q 005502 257 RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV 308 (693)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl 308 (693)
..++.|+|.. .|+.+.|+|....|++++.|.+||+=.+
T Consensus 300 -------~lyklpGh~g-------svn~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 300 -------ILYKLPGHYG-------SVNEVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred -------EEEEcCCcce-------eEEEeeecCCCcEEEEeccCceeEeecc
Confidence 3455555544 4999999999999999999999998543
No 65
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.89 E-value=2.8e-21 Score=200.48 Aligned_cols=252 Identities=14% Similarity=0.196 Sum_probs=179.5
Q ss_pred hhccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcE-EE-EeccCCCcceEEEEEeeCCCCCEEEEE
Q 005502 36 LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL-LH-SIETGHSANVFCTKFVPETSDELVVSG 113 (693)
Q Consensus 36 ~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~-~~-~l~~~h~~~I~sl~f~p~~~~~~l~sg 113 (693)
.+..+.....+.+|..+|+-..|+|.|.++|||...|+|+|||...... ++ ++ +...++|.+++|.+++ ..|++.
T Consensus 45 ~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef-~v~aG~I~Di~Wd~ds--~RI~av 121 (603)
T KOG0318|consen 45 NIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEF-QVLAGPIKDISWDFDS--KRIAAV 121 (603)
T ss_pred ECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeee-eecccccccceeCCCC--cEEEEE
Confidence 3455566778899999999999999999999999999999999865322 22 23 4455667777776663 333333
Q ss_pred eCC----CcEEEEEcCCCCCCCC-------------------------------CCCCCCCceeeccCCCCeEEEEEecC
Q 005502 114 AGD----AEVRLFNLSRFSGRGL-------------------------------DDNAITPSALYQCHTRRVKKLAVEVG 158 (693)
Q Consensus 114 s~D----g~V~vwdl~~~~~~~~-------------------------------~~~~~~~~~~~~~h~~~V~~l~~sp~ 158 (693)
+.- |.+.+||-.+..+... ...+.+...++..|+..|.++.|+|
T Consensus 122 GEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysP- 200 (603)
T KOG0318|consen 122 GEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSP- 200 (603)
T ss_pred ecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECC-
Confidence 321 2345555543222110 1112244456677999999999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCC
Q 005502 159 NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA 238 (693)
Q Consensus 159 ~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg 238 (693)
++..|+|++.||+|.+||-.+++.+ ..+.....|...|..++|+|+ +..+++++.|.
T Consensus 201 DG~~Fat~gsDgki~iyDGktge~v----------------------g~l~~~~aHkGsIfalsWsPD-s~~~~T~SaDk 257 (603)
T KOG0318|consen 201 DGSRFATAGSDGKIYIYDGKTGEKV----------------------GELEDSDAHKGSIFALSWSPD-STQFLTVSADK 257 (603)
T ss_pred CCCeEEEecCCccEEEEcCCCccEE----------------------EEecCCCCccccEEEEEECCC-CceEEEecCCc
Confidence 6899999999999999998887632 123334578899999999998 78999999999
Q ss_pred cEEEEecCCCCCCcccccCCC----C---------------CCcccccccCccc----cCCCCccceEEEEEcCCCCEEE
Q 005502 239 FARLYDRRMLPPLTSCQKRMS----P---------------PPCVNYFCPMHLS----EHGRSSLHLTHVTFSPNGEEVL 295 (693)
Q Consensus 239 ~I~lwD~r~~~~~~~~~~~~~----~---------------~~~~~~~~~~~~~----~~~h~~~~V~~v~fspdg~~L~ 295 (693)
+++|||..+.+.+.++..... . ...+.++.+.+.. ..||.. .|++++.+|++++|+
T Consensus 258 t~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK-~ITaLtv~~d~~~i~ 336 (603)
T KOG0318|consen 258 TIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNK-SITALTVSPDGKTIY 336 (603)
T ss_pred eEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheeccccc-ceeEEEEcCCCCEEE
Confidence 999999998887666543322 0 1111222222211 146666 699999999999999
Q ss_pred EEecCCcEEEEECCCCCcce
Q 005502 296 LSYSGEHVYLMDVNHAGGRA 315 (693)
Q Consensus 296 sgs~Dg~V~lwDl~~~~~~~ 315 (693)
+|+.||.|.-||+.++....
T Consensus 337 SgsyDG~I~~W~~~~g~~~~ 356 (603)
T KOG0318|consen 337 SGSYDGHINSWDSGSGTSDR 356 (603)
T ss_pred eeccCceEEEEecCCccccc
Confidence 99999999999999976443
No 66
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.89 E-value=9.2e-22 Score=188.71 Aligned_cols=238 Identities=18% Similarity=0.261 Sum_probs=187.1
Q ss_pred hccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeC-
Q 005502 37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG- 115 (693)
Q Consensus 37 i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~- 115 (693)
...++.+.++.||++.|+|+..+-+.+.|+||+.|.+++|||+.+|+++..+. ...+|..+.|++. |++++.+..
T Consensus 39 s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k--~~~~Vk~~~F~~~--gn~~l~~tD~ 114 (327)
T KOG0643|consen 39 SLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK--TNSPVKRVDFSFG--GNLILASTDK 114 (327)
T ss_pred ecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee--cCCeeEEEeeccC--CcEEEEEehh
Confidence 44677789999999999999999999999999999999999999999999884 5678999999998 566666543
Q ss_pred ----CCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCc
Q 005502 116 ----DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ 191 (693)
Q Consensus 116 ----Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~ 191 (693)
.+.|.++|++..+.. ....+|...+..+.+.++.+-|.| .+.+|++|.+||.|.+||++++...
T Consensus 115 ~mg~~~~v~~fdi~~~~~~---~~s~ep~~kI~t~~skit~a~Wg~-l~~~ii~Ghe~G~is~~da~~g~~~-------- 182 (327)
T KOG0643|consen 115 QMGYTCFVSVFDIRDDSSD---IDSEEPYLKIPTPDSKITSALWGP-LGETIIAGHEDGSISIYDARTGKEL-------- 182 (327)
T ss_pred hcCcceEEEEEEccCChhh---hcccCceEEecCCccceeeeeecc-cCCEEEEecCCCcEEEEEcccCcee--------
Confidence 467999999864321 112256788888999999999999 6788999999999999999987522
Q ss_pred ccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccC-
Q 005502 192 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM- 270 (693)
Q Consensus 192 ~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~- 270 (693)
+.....|...|+.+.++|+ ..++++|+.|.+.++||.+++..++++.... |..+... .|.
T Consensus 183 ----------------v~s~~~h~~~Ind~q~s~d-~T~FiT~s~Dttakl~D~~tl~v~Kty~te~-PvN~aai-sP~~ 243 (327)
T KOG0643|consen 183 ----------------VDSDEEHSSKINDLQFSRD-RTYFITGSKDTTAKLVDVRTLEVLKTYTTER-PVNTAAI-SPLL 243 (327)
T ss_pred ----------------eechhhhccccccccccCC-cceEEecccCccceeeeccceeeEEEeeecc-cccceec-cccc
Confidence 2222356678999999998 5899999999999999999988766653321 1111100 000
Q ss_pred -----------------------------c-------cccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCC
Q 005502 271 -----------------------------H-------LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 271 -----------------------------~-------~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~ 310 (693)
| ..-++|-+ +|++|+|+|+|+..++|+.||.|++.-+..
T Consensus 244 d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFG-PINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 244 DHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFG-PINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred ceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccccc-CcceeEECCCCcccccCCCCceEEEEEecc
Confidence 0 01146666 899999999999999999999999986654
No 67
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=9.4e-22 Score=186.49 Aligned_cols=236 Identities=17% Similarity=0.194 Sum_probs=181.8
Q ss_pred cCcccccchhhhcc-ccceEEeccCCCcEEEEEECC--CCCEEEEEeCCCcEEEEECCCCcEE--EEeccCCCcceEEEE
Q 005502 26 VNHSLQMHSSLVRR-LSQERELEGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSRKLL--HSIETGHSANVFCTK 100 (693)
Q Consensus 26 ~~~~l~~~~~~i~~-l~~~~~l~gH~~~V~~l~~s~--~g~~LaSgs~Dg~I~IWd~~~~~~~--~~l~~~h~~~I~sl~ 100 (693)
.+..++++..--.. .+++.+|+||.++|..++|.. .|.+|||++.||+|.||....++.. ... ..|.+.|++|+
T Consensus 31 SD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~-~~h~~SVNsV~ 109 (299)
T KOG1332|consen 31 SDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEH-AAHSASVNSVA 109 (299)
T ss_pred CCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhh-hhhcccceeec
Confidence 44555555432222 378999999999999999987 7999999999999999998877432 333 57999999999
Q ss_pred EeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCC-------------CcEEEEEe
Q 005502 101 FVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-------------PHVVWSAS 167 (693)
Q Consensus 101 f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-------------~~~l~Sgs 167 (693)
|.|...|-+|+.++.||.|.|.+.+...+ ....+...+|...|++++|.|.. .+.|+||+
T Consensus 110 wapheygl~LacasSDG~vsvl~~~~~g~-------w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgG 182 (299)
T KOG1332|consen 110 WAPHEYGLLLACASSDGKVSVLTYDSSGG-------WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGG 182 (299)
T ss_pred ccccccceEEEEeeCCCcEEEEEEcCCCC-------ccchhhhhccccccceeeecCcCCCccccccCcccccceeeccC
Confidence 99998888999999999999999986422 24456778999999999999841 15699999
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCC---cEEEEEeCCCcEEEEe
Q 005502 168 EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRP---HLLLVGGSDAFARLYD 244 (693)
Q Consensus 168 ~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~---~~Latgs~Dg~I~lwD 244 (693)
.|..|+||+....+-. .-....+|...|+.++|.|.-+ .+||+++.||.|.||-
T Consensus 183 cDn~VkiW~~~~~~w~-----------------------~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt 239 (299)
T KOG1332|consen 183 CDNLVKIWKFDSDSWK-----------------------LERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWT 239 (299)
T ss_pred CccceeeeecCCcchh-----------------------hhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEE
Confidence 9999999998775311 0112447888999999999643 5899999999999998
Q ss_pred cCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCC
Q 005502 245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 245 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~ 310 (693)
.+.. ...+.. ..+..| ...+..+.||+.|..|+++++|+.|.+|.-+.
T Consensus 240 ~~~e--~e~wk~-----tll~~f-----------~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 240 KDEE--YEPWKK-----TLLEEF-----------PDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred ecCc--cCcccc-----cccccC-----------CcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 7732 111110 111111 12589999999999999999999999997654
No 68
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.5e-21 Score=208.92 Aligned_cols=247 Identities=15% Similarity=0.192 Sum_probs=197.2
Q ss_pred ccccchhhhccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCC
Q 005502 29 SLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE 108 (693)
Q Consensus 29 ~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~ 108 (693)
.+-+|.........+..+. ...|+++.|+++|.+||+|..+|.|.|||..+.+.+..+...|...|-+++|.. .
T Consensus 198 ~vylW~~~s~~v~~l~~~~--~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~----~ 271 (484)
T KOG0305|consen 198 SVYLWSASSGSVTELCSFG--EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNS----S 271 (484)
T ss_pred eEEEEecCCCceEEeEecC--CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccC----c
Confidence 4444554444433343333 889999999999999999999999999999999999999444999999999983 5
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCC
Q 005502 109 LVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS 188 (693)
Q Consensus 109 ~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~ 188 (693)
.+.+|+.|+.|.++|++... ....++.+|...|..++|++ ++.+|++|+.|+.|.|||.....+.
T Consensus 272 ~lssGsr~~~I~~~dvR~~~---------~~~~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~----- 336 (484)
T KOG0305|consen 272 VLSSGSRDGKILNHDVRISQ---------HVVSTLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPK----- 336 (484)
T ss_pred eEEEecCCCcEEEEEEecch---------hhhhhhhcccceeeeeEECC-CCCeeccCCCccceEeccCCCcccc-----
Confidence 89999999999999999753 22334889999999999999 7799999999999999999554422
Q ss_pred CCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEe--CCCcEEEEecCCCCCCcccccCCCCCCcccc
Q 005502 189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG--SDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266 (693)
Q Consensus 189 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs--~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~ 266 (693)
.....|...|+.++|+|....+||+|+ .|+.|++||..++..+...
T Consensus 337 --------------------~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v------------ 384 (484)
T KOG0305|consen 337 --------------------FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV------------ 384 (484)
T ss_pred --------------------EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc------------
Confidence 222367889999999999999999976 5999999999987655332
Q ss_pred cccCccccCCCCccceEEEEEcCCCCEEEEEec--CCcEEEEECCCCCcceEEeecCCCceeEEeccCCCcccc
Q 005502 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS--GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLEL 338 (693)
Q Consensus 267 ~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~--Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~ 338 (693)
..+..|.+|.|++..+.|+++.+ ++.|.||+..+......+..|...+-.++++|+...+..
T Consensus 385 ----------dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t 448 (484)
T KOG0305|consen 385 ----------DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVT 448 (484)
T ss_pred ----------ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEE
Confidence 22336999999999999887765 789999999996666666666666667778888555433
No 69
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=2.4e-21 Score=189.89 Aligned_cols=236 Identities=19% Similarity=0.300 Sum_probs=178.1
Q ss_pred hccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCC
Q 005502 37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD 116 (693)
Q Consensus 37 i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~D 116 (693)
.-.+.+...+..|.++|++++.+ +.++||||.|-+|+|||+.+.+.+..+ ..|.+.|+++.|.+...-..|++|+.|
T Consensus 30 ~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~l-l~HagsitaL~F~~~~S~shLlS~sdD 106 (362)
T KOG0294|consen 30 KPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGIL-LSHAGSITALKFYPPLSKSHLLSGSDD 106 (362)
T ss_pred ceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcce-eccccceEEEEecCCcchhheeeecCC
Confidence 34466678889999999999985 889999999999999999999888888 689999999999987533489999999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceE
Q 005502 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (693)
Q Consensus 117 g~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~ 196 (693)
|.|.+|+... +..+..+++|...|+.|+++| .+.+-++.+.|+.++.|++-.++........ .....+
T Consensus 107 G~i~iw~~~~----------W~~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~-~~at~v 174 (362)
T KOG0294|consen 107 GHIIIWRVGS----------WELLKSLKAHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLNLK-NKATLV 174 (362)
T ss_pred CcEEEEEcCC----------eEEeeeecccccccceeEecC-CCceEEEEcCCceeeeehhhcCccceeeccC-Ccceee
Confidence 9999999985 377899999999999999999 7788889999999999999877632111111 111123
Q ss_pred EEeccCCceeeec----------------CCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCC
Q 005502 197 LLDLRCGAKRSLA----------------DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP 260 (693)
Q Consensus 197 l~~~~~~~~~~l~----------------~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~ 260 (693)
.|... |....+. ..-.....+.|+.|-. +..|++|+.|+.|++||..+..+...+
T Consensus 175 ~w~~~-Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~--~~~L~vG~d~~~i~~~D~ds~~~~~~~------ 245 (362)
T KOG0294|consen 175 SWSPQ-GDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLD--GSELLVGGDNEWISLKDTDSDTPLTEF------ 245 (362)
T ss_pred EEcCC-CCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecC--CceEEEecCCceEEEeccCCCccceee------
Confidence 33211 1100000 0001112355566654 579999999999999999876544332
Q ss_pred CCcccccccCccccCCCCccceEEEEE--cCCCCEEEEEecCCcEEEEECCCC
Q 005502 261 PPCVNYFCPMHLSEHGRSSLHLTHVTF--SPNGEEVLLSYSGEHVYLMDVNHA 311 (693)
Q Consensus 261 ~~~~~~~~~~~~~~~~h~~~~V~~v~f--spdg~~L~sgs~Dg~V~lwDl~~~ 311 (693)
.+|.+ .|..+.+ .|++.+|++++.||.|++||+...
T Consensus 246 --------------~AH~~-RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 246 --------------LAHEN-RVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred --------------ecchh-heeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 34555 5777774 478899999999999999999874
No 70
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.88 E-value=3.9e-22 Score=214.29 Aligned_cols=223 Identities=17% Similarity=0.280 Sum_probs=183.8
Q ss_pred cccccchh--hhccccceEEeccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEECCCCcE---EEE-----eccCCCcce
Q 005502 28 HSLQMHSS--LVRRLSQERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKL---LHS-----IETGHSANV 96 (693)
Q Consensus 28 ~~l~~~~~--~i~~l~~~~~l~gH~~~V~~l~~s~~g-~~LaSgs~Dg~I~IWd~~~~~~---~~~-----l~~~h~~~I 96 (693)
+++.+|+. --...-+.+...||++.|.+++++..+ .+|+++|.|++|++|++...+. ... ....|...|
T Consensus 387 ~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdI 466 (775)
T KOG0319|consen 387 KSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDI 466 (775)
T ss_pred ceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccc
Confidence 44445532 233445566778999999999997754 6999999999999999976221 111 124799999
Q ss_pred EEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 005502 97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD 176 (693)
Q Consensus 97 ~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwD 176 (693)
.||+.+|+ +.+|+||+.|.+.+||++... ....++.+|+..|.++.|+| ..++++|+|.|++|+||.
T Consensus 467 N~Vaia~n--dkLiAT~SqDktaKiW~le~~----------~l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~ 533 (775)
T KOG0319|consen 467 NCVAIAPN--DKLIATGSQDKTAKIWDLEQL----------RLLGVLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWS 533 (775)
T ss_pred cceEecCC--CceEEecccccceeeecccCc----------eEEEEeeCCccceEEEEecc-ccceeEeccCCceEEEEE
Confidence 99999999 799999999999999999943 56889999999999999999 668999999999999999
Q ss_pred CCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCccccc
Q 005502 177 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK 256 (693)
Q Consensus 177 lr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~ 256 (693)
+.+.. .+....+|...|..+.|-.+ +..|++++.||-|++|++.+.
T Consensus 534 is~fS-------------------------ClkT~eGH~~aVlra~F~~~-~~qliS~~adGliKlWnikt~-------- 579 (775)
T KOG0319|consen 534 ISTFS-------------------------CLKTFEGHTSAVLRASFIRN-GKQLISAGADGLIKLWNIKTN-------- 579 (775)
T ss_pred eccce-------------------------eeeeecCccceeEeeeeeeC-CcEEEeccCCCcEEEEeccch--------
Confidence 98865 23344578889999999886 789999999999999999986
Q ss_pred CCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCC
Q 005502 257 RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~ 310 (693)
.|+.++ ..|.+ .|+.++-+|.+.++++|++||.|.+|.=.+
T Consensus 580 -----eC~~tl-------D~H~D-rvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 580 -----ECEMTL-------DAHND-RVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred -----hhhhhh-------hhccc-eeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 455555 56776 699999999999999999999999996555
No 71
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.88 E-value=4.6e-21 Score=183.93 Aligned_cols=237 Identities=20% Similarity=0.332 Sum_probs=189.6
Q ss_pred EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEc
Q 005502 45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124 (693)
Q Consensus 45 ~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl 124 (693)
.|+||..+++.|.++.+|.+|.|++.|.++.||-...|+.+.++ .||++.|+|+...-++ ..++||+.|.++++||+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty-~GHtGavW~~Did~~s--~~liTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTY-DGHTGAVWCCDIDWDS--KHLITGSADQTAKLWDV 81 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeee-cCCCceEEEEEecCCc--ceeeeccccceeEEEEc
Confidence 47899999999999999999999999999999998899999999 7999999999998884 89999999999999999
Q ss_pred CCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeC-----CCcEEEEeCCCCCCCCCCCCCCcccceEEEe
Q 005502 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-----DGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (693)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~-----Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~ 199 (693)
.++ +.+..+. -..+|+.+.|++ ++++++.+.. .+.|.++|++..... ....++
T Consensus 82 ~tG----------k~la~~k-~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~----~~s~ep------ 139 (327)
T KOG0643|consen 82 ETG----------KQLATWK-TNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSD----IDSEEP------ 139 (327)
T ss_pred CCC----------cEEEEee-cCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhh----hcccCc------
Confidence 976 4456665 567899999999 6666665544 468999999865321 001111
Q ss_pred ccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCc
Q 005502 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (693)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 279 (693)
+...+.+...++.+-|.|. ++.|++|..||.|.+||.+++..+... ...|..
T Consensus 140 --------~~kI~t~~skit~a~Wg~l-~~~ii~Ghe~G~is~~da~~g~~~v~s-------------------~~~h~~ 191 (327)
T KOG0643|consen 140 --------YLKIPTPDSKITSALWGPL-GETIIAGHEDGSISIYDARTGKELVDS-------------------DEEHSS 191 (327)
T ss_pred --------eEEecCCccceeeeeeccc-CCEEEEecCCCcEEEEEcccCceeeec-------------------hhhhcc
Confidence 1111223467899999997 789999999999999999987532111 012333
Q ss_pred cceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCcc
Q 005502 280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGL 336 (693)
Q Consensus 280 ~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~g~ 336 (693)
.|+.+.|+||..++++++.|.+-++||+.+.. ....|....|++..+++|..+.+
T Consensus 192 -~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~-v~Kty~te~PvN~aaisP~~d~V 246 (327)
T KOG0643|consen 192 -KINDLQFSRDRTYFITGSKDTTAKLVDVRTLE-VLKTYTTERPVNTAAISPLLDHV 246 (327)
T ss_pred -ccccccccCCcceEEecccCccceeeecccee-eEEEeeecccccceecccccceE
Confidence 69999999999999999999999999999944 66677888899988888865543
No 72
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.88 E-value=1.9e-21 Score=217.91 Aligned_cols=235 Identities=20% Similarity=0.324 Sum_probs=180.4
Q ss_pred cceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC------------------CcEEEEeccCCCcceEEEEEe
Q 005502 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS------------------RKLLHSIETGHSANVFCTKFV 102 (693)
Q Consensus 41 ~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~------------------~~~~~~l~~~h~~~I~sl~f~ 102 (693)
+++-++..|.++|+|+.|++||++||+||+|+.|.||.... .+++..+ .+|.+.|..++|+
T Consensus 60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l-~~H~~DV~Dv~Ws 138 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSIL-RGHDSDVLDVNWS 138 (942)
T ss_pred hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEE-ecCCCccceeccC
Confidence 34556778999999999999999999999999999999872 1345555 7999999999999
Q ss_pred eCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCC
Q 005502 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (693)
Q Consensus 103 p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~ 182 (693)
|+ +.+|++++.|++|.||+..+. +.+..+.+|...|+.+.|.| -+++|+|-+.|++|++|.+.....
T Consensus 139 p~--~~~lvS~s~DnsViiwn~~tF----------~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i 205 (942)
T KOG0973|consen 139 PD--DSLLVSVSLDNSVIIWNAKTF----------ELLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGI 205 (942)
T ss_pred CC--ccEEEEecccceEEEEccccc----------eeeeeeecccccccceEECC-ccCeeeeecCCceEEEEEccccee
Confidence 98 799999999999999999976 56889999999999999999 779999999999999999665321
Q ss_pred CCCCCCCC---------------ccc--------------ceEEEeccCCceeeecCCCCCccceEEEEEcCC-------
Q 005502 183 CPPAGSSH---------------QEC--------------RNILLDLRCGAKRSLADPPKQTLSLKSCDISST------- 226 (693)
Q Consensus 183 ~~~~~~~~---------------~~~--------------~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~------- 226 (693)
...+...- .++ ...|++ -+....-...-+|..++.++.|+|.
T Consensus 206 ~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Iie--R~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ 283 (942)
T KOG0973|consen 206 EKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIE--RGTWKVDKDLVGHSAPVEVVRFNPKLFERNNK 283 (942)
T ss_pred eEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEe--cCCceeeeeeecCCCceEEEEeChHHhccccc
Confidence 10000000 000 001111 1222223344578889999999982
Q ss_pred -----CCc----EEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEE
Q 005502 227 -----RPH----LLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS 297 (693)
Q Consensus 227 -----~~~----~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sg 297 (693)
.++ .+|+|+.|+.|-||.....+|+..+. + -.+..|..++|+|||..|+++
T Consensus 284 ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~---------~-----------lf~~SI~DmsWspdG~~Lfac 343 (942)
T KOG0973|consen 284 NGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIH---------N-----------LFNKSIVDMSWSPDGFSLFAC 343 (942)
T ss_pred cCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhh---------h-----------hhcCceeeeeEcCCCCeEEEE
Confidence 122 78999999999999987665543221 1 112369999999999999999
Q ss_pred ecCCcEEEEECCCC
Q 005502 298 YSGEHVYLMDVNHA 311 (693)
Q Consensus 298 s~Dg~V~lwDl~~~ 311 (693)
+.||+|.++.+...
T Consensus 344 S~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 344 SLDGTVALIHFEEK 357 (942)
T ss_pred ecCCeEEEEEcchH
Confidence 99999999999874
No 73
>PTZ00421 coronin; Provisional
Probab=99.88 E-value=7e-21 Score=210.62 Aligned_cols=217 Identities=15% Similarity=0.118 Sum_probs=161.9
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEE-------------EeccCCCcceEEEEEeeCCCCCEEEEEeC
Q 005502 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH-------------SIETGHSANVFCTKFVPETSDELVVSGAG 115 (693)
Q Consensus 49 H~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~-------------~l~~~h~~~I~sl~f~p~~~~~~l~sgs~ 115 (693)
|-..|+....++++..+++++.+..+..|+...+..+. .+ .+|.+.|++++|+|.. +++|++|+.
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l-~GH~~~V~~v~fsP~d-~~~LaSgS~ 96 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPIL-LGQEGPIIDVAFNPFD-PQKLFTASE 96 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceE-eCCCCCEEEEEEcCCC-CCEEEEEeC
Confidence 33456666667777778888888888888865443221 23 5899999999999942 689999999
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccce
Q 005502 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (693)
Q Consensus 116 Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~ 195 (693)
|++|++||+...... .....++..+.+|...|.+++|+|...++|++++.|++|++||++++...
T Consensus 97 DgtIkIWdi~~~~~~---~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~------------ 161 (493)
T PTZ00421 97 DGTIMGWGIPEEGLT---QNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAV------------ 161 (493)
T ss_pred CCEEEEEecCCCccc---cccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEE------------
Confidence 999999999753110 01124577889999999999999976789999999999999999875411
Q ss_pred EEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccC
Q 005502 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (693)
Q Consensus 196 ~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (693)
.....|...|.+++|+|+ +.+|++|+.|+.|++||+++++.+..+ .
T Consensus 162 -------------~~l~~h~~~V~sla~spd-G~lLatgs~Dg~IrIwD~rsg~~v~tl--------------------~ 207 (493)
T PTZ00421 162 -------------EVIKCHSDQITSLEWNLD-GSLLCTTSKDKKLNIIDPRDGTIVSSV--------------------E 207 (493)
T ss_pred -------------EEEcCCCCceEEEEEECC-CCEEEEecCCCEEEEEECCCCcEEEEE--------------------e
Confidence 111245668999999997 789999999999999999986533222 2
Q ss_pred CCCccceEEEEEcCCCCEEEEEe----cCCcEEEEECCCCCcceE
Q 005502 276 GRSSLHLTHVTFSPNGEEVLLSY----SGEHVYLMDVNHAGGRAM 316 (693)
Q Consensus 276 ~h~~~~V~~v~fspdg~~L~sgs----~Dg~V~lwDl~~~~~~~~ 316 (693)
+|....+..+.|.+++..|++++ .|+.|++||+++...+..
T Consensus 208 ~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~ 252 (493)
T PTZ00421 208 AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYS 252 (493)
T ss_pred cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCcee
Confidence 23332356788999988887765 378999999998654433
No 74
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=6.4e-22 Score=215.37 Aligned_cols=243 Identities=18% Similarity=0.251 Sum_probs=190.8
Q ss_pred EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEc
Q 005502 45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124 (693)
Q Consensus 45 ~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl 124 (693)
.|+..+..|..|+|+|.-.+++++--.|.|++||+.=+.++..| ..|.++|..|.|+|. ..+|++|+.|-+|+||+.
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rF-deHdGpVRgv~FH~~--qplFVSGGDDykIkVWnY 80 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVDFHPT--QPLFVSGGDDYKIKVWNY 80 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhh-hccCCccceeeecCC--CCeEEecCCccEEEEEec
Confidence 35666788999999999999999999999999999988899998 799999999999999 589999999999999999
Q ss_pred CCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCc
Q 005502 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (693)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (693)
... +++.++.+|.+.|+.+.|++.- -+|+|+|.|.+|+||+..+.+.
T Consensus 81 k~r----------rclftL~GHlDYVRt~~FHhey-PWIlSASDDQTIrIWNwqsr~~---------------------- 127 (1202)
T KOG0292|consen 81 KTR----------RCLFTLLGHLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQSRKC---------------------- 127 (1202)
T ss_pred ccc----------eehhhhccccceeEEeeccCCC-ceEEEccCCCeEEEEeccCCce----------------------
Confidence 865 6788999999999999999944 5777999999999999987652
Q ss_pred eeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCccccc----CC-----------CCCCccccccc
Q 005502 205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK----RM-----------SPPPCVNYFCP 269 (693)
Q Consensus 205 ~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~----~~-----------~~~~~~~~~~~ 269 (693)
+....+|...|.|..|+|. ..++++++-|.+||+||+.-++.-..-+. .+ .+...++...
T Consensus 128 ---iavltGHnHYVMcAqFhpt-EDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VL- 202 (1202)
T KOG0292|consen 128 ---IAVLTGHNHYVMCAQFHPT-EDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVL- 202 (1202)
T ss_pred ---EEEEecCceEEEeeccCCc-cceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeee-
Confidence 2233467889999999997 57999999999999999875432111110 00 0011111111
Q ss_pred CccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCC--cceEEeecCCCceeEEeccCCC
Q 005502 270 MHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG--GRAMRYTVGDASKIMSFTPTLN 334 (693)
Q Consensus 270 ~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~--~~~~~~~~~~~~~~~~~~p~~~ 334 (693)
.||.- .|+-++|+|.-..|++|+.|..|++|.++..+ ..-....|-.++..+-|+|..+
T Consensus 203 -----EGHDR-GVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~ 263 (1202)
T KOG0292|consen 203 -----EGHDR-GVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQD 263 (1202)
T ss_pred -----ccccc-ccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccc
Confidence 34554 59999999999999999999999999998743 2223344445555666777443
No 75
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.88 E-value=2.8e-21 Score=196.31 Aligned_cols=213 Identities=19% Similarity=0.244 Sum_probs=178.3
Q ss_pred ccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 005502 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (693)
Q Consensus 38 ~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg 117 (693)
..-+...+|+||+..|+.+.++++...+++++.|..|+||..........+ ..|..+|+.+..+|+ |.+|++++.|+
T Consensus 249 ~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~-~~h~~~V~~ls~h~t--geYllsAs~d~ 325 (506)
T KOG0289|consen 249 PSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS-RPHEEPVTGLSLHPT--GEYLLSASNDG 325 (506)
T ss_pred chhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc-ccccccceeeeeccC--CcEEEEecCCc
Confidence 445567889999999999999999999999999999999999877766666 689999999999999 79999999999
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCceeec--cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccce
Q 005502 118 EVRLFNLSRFSGRGLDDNAITPSALYQ--CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (693)
Q Consensus 118 ~V~vwdl~~~~~~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~ 195 (693)
+..+.|++.+. .+.... ...-.+++.+||| ++.+|.+|..||.|++||+.++.
T Consensus 326 ~w~Fsd~~~g~----------~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~-------------- 380 (506)
T KOG0289|consen 326 TWAFSDISSGS----------QLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQT-------------- 380 (506)
T ss_pred eEEEEEccCCc----------EEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCcc--------------
Confidence 99999999652 122222 1224589999999 78999999999999999998765
Q ss_pred EEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccC
Q 005502 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (693)
Q Consensus 196 ~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (693)
.+..+++|..+|+.++|+.+ |.+||+++.|+.|++||+|..+.+.++...
T Consensus 381 -----------~~a~Fpght~~vk~i~FsEN-GY~Lat~add~~V~lwDLRKl~n~kt~~l~------------------ 430 (506)
T KOG0289|consen 381 -----------NVAKFPGHTGPVKAISFSEN-GYWLATAADDGSVKLWDLRKLKNFKTIQLD------------------ 430 (506)
T ss_pred -----------ccccCCCCCCceeEEEeccC-ceEEEEEecCCeEEEEEehhhcccceeecc------------------
Confidence 24456679999999999996 899999999999999999988765544221
Q ss_pred CCCccceEEEEEcCCCCEEEEEecCCcEEEEECCC
Q 005502 276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 276 ~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~ 310 (693)
....|.++.|.+.|.+|+.++.|=+||+++-.+
T Consensus 431 --~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~ 463 (506)
T KOG0289|consen 431 --EKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT 463 (506)
T ss_pred --ccccceeEEEcCCCCeEEeecceeEEEEEeccc
Confidence 112589999999999999998888888888555
No 76
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=7.2e-22 Score=199.26 Aligned_cols=238 Identities=16% Similarity=0.192 Sum_probs=178.1
Q ss_pred ccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 005502 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (693)
Q Consensus 38 ~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg 117 (693)
..+++.++|.||..+|..|.|+||.++|++|+.|..+.+||+.++.+.+.+..+|...+.+++|.|+ +..+++|+.|+
T Consensus 257 ~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pD--g~~~V~Gs~dr 334 (519)
T KOG0293|consen 257 VHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPD--GFRFVTGSPDR 334 (519)
T ss_pred cceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccC--CceeEecCCCC
Confidence 3478899999999999999999999999999999999999999999999887777889999999999 68999999999
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCceeeccC-CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCC--------
Q 005502 118 EVRLFNLSRFSGRGLDDNAITPSALYQCH-TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS-------- 188 (693)
Q Consensus 118 ~V~vwdl~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~-------- 188 (693)
+|..||+... ....+.+- ...|.++++++ ++..+++.+.|..|++++..+......+..
T Consensus 335 ~i~~wdlDgn-----------~~~~W~gvr~~~v~dlait~-Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~ 402 (519)
T KOG0293|consen 335 TIIMWDLDGN-----------ILGNWEGVRDPKVHDLAITY-DGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFS 402 (519)
T ss_pred cEEEecCCcc-----------hhhcccccccceeEEEEEcC-CCcEEEEEecccceeeechhhhhhhccccccCceeEEE
Confidence 9999999853 23334332 25699999999 667777888999999999765432211100
Q ss_pred CCcccc----------eEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCC
Q 005502 189 SHQECR----------NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRM 258 (693)
Q Consensus 189 ~~~~~~----------~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~ 258 (693)
...+.. ..+|++.................+..-+|-.-+..++++|+.|+.|+||+..+++++..+
T Consensus 403 iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~L---- 478 (519)
T KOG0293|consen 403 ISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVL---- 478 (519)
T ss_pred EcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEee----
Confidence 011111 235555533222111112222334444565555579999999999999999998776544
Q ss_pred CCCCcccccccCccccCCCCccceEEEEEcCCCC-EEEEEecCCcEEEEECCC
Q 005502 259 SPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~-~L~sgs~Dg~V~lwDl~~ 310 (693)
.||.. .|++|+|+|... ++++++.||+|+||-...
T Consensus 479 ----------------sGHs~-~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 479 ----------------SGHSK-TVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ----------------cCCcc-eeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 44555 599999999765 677888899999998765
No 77
>PTZ00420 coronin; Provisional
Probab=99.88 E-value=1.2e-20 Score=209.73 Aligned_cols=200 Identities=14% Similarity=0.174 Sum_probs=151.5
Q ss_pred EeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCC
Q 005502 68 GSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHT 147 (693)
Q Consensus 68 gs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~ 147 (693)
|+.++.|++|+......+..+ .+|.+.|.+++|+|.. +.+|+||+.|++|+|||+....... .....++..+.+|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L-~gH~~~V~~lafsP~~-~~lLASgS~DgtIrIWDi~t~~~~~--~~i~~p~~~L~gH~ 125 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKL-KGHTSSILDLQFNPCF-SEILASGSEDLTIRVWEIPHNDESV--KEIKDPQCILKGHK 125 (568)
T ss_pred CCceeEEEeeecCCCceEEEE-cCCCCCEEEEEEcCCC-CCEEEEEeCCCeEEEEECCCCCccc--cccccceEEeecCC
Confidence 677899999999887777777 7999999999999974 5899999999999999997532100 00013456778999
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCC
Q 005502 148 RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR 227 (693)
Q Consensus 148 ~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~ 227 (693)
..|.+++|+|.+..+|++++.||+|++||++++... .. + .+...|.+++|+|+
T Consensus 126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~--------------~~--------i----~~~~~V~Slswspd- 178 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRA--------------FQ--------I----NMPKKLSSLKWNIK- 178 (568)
T ss_pred CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEE--------------EE--------E----ecCCcEEEEEECCC-
Confidence 999999999977677889999999999999876421 10 1 11246899999997
Q ss_pred CcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCc----cceEEEEEcCCCCEEEEEecCC--
Q 005502 228 PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS----LHLTHVTFSPNGEEVLLSYSGE-- 301 (693)
Q Consensus 228 ~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~----~~V~~v~fspdg~~L~sgs~Dg-- 301 (693)
+.+|++++.|+.|+|||+++++.+..+ .+|.+ ..+....|++++.+|++++.|+
T Consensus 179 G~lLat~s~D~~IrIwD~Rsg~~i~tl--------------------~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~ 238 (568)
T PTZ00420 179 GNLLSGTCVGKHMHIIDPRKQEIASSF--------------------HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNN 238 (568)
T ss_pred CCEEEEEecCCEEEEEECCCCcEEEEE--------------------ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCC
Confidence 789999999999999999987543322 12222 1234456779999999988764
Q ss_pred --cEEEEECCCCCcceEEe
Q 005502 302 --HVYLMDVNHAGGRAMRY 318 (693)
Q Consensus 302 --~V~lwDl~~~~~~~~~~ 318 (693)
+|+|||+++...+....
T Consensus 239 ~R~VkLWDlr~~~~pl~~~ 257 (568)
T PTZ00420 239 MREMKLWDLKNTTSALVTM 257 (568)
T ss_pred ccEEEEEECCCCCCceEEE
Confidence 79999999755444443
No 78
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.88 E-value=3.9e-21 Score=212.98 Aligned_cols=226 Identities=26% Similarity=0.356 Sum_probs=182.9
Q ss_pred CcccccchhhhccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCC
Q 005502 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS 106 (693)
Q Consensus 27 ~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~ 106 (693)
.+.++.|+ .+........|.||.+.|.++++..-+.+|++|+.|.+++|||..++.+.+++ .+|.+.|.++...+.
T Consensus 227 ~~tl~~~~-~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l-~gh~stv~~~~~~~~-- 302 (537)
T KOG0274|consen 227 DSTLHLWD-LNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSL-QGHTSSVRCLTIDPF-- 302 (537)
T ss_pred CceeEEee-cccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEe-cCCCceEEEEEccCc--
Confidence 34555554 22333334449999999999999987889999999999999999999999999 799999999998765
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCC
Q 005502 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA 186 (693)
Q Consensus 107 ~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~ 186 (693)
++++|+.|.+|++|++.++ ..+..+.+|...|+++..+ ..++++|+.||+|++||+++.+
T Consensus 303 --~~~sgs~D~tVkVW~v~n~----------~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~----- 362 (537)
T KOG0274|consen 303 --LLVSGSRDNTVKVWDVTNG----------ACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGK----- 362 (537)
T ss_pred --eEeeccCCceEEEEeccCc----------ceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhce-----
Confidence 7899999999999999965 5688888899999999996 5789999999999999999765
Q ss_pred CCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccc
Q 005502 187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266 (693)
Q Consensus 187 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~ 266 (693)
.+....+|...|+++.+.+. ..+++|+.|+.|++||+++.. .|+..
T Consensus 363 --------------------cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~------------~c~~t 408 (537)
T KOG0274|consen 363 --------------------CLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKR------------KCIHT 408 (537)
T ss_pred --------------------eeeeecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchh------------hhhhh
Confidence 23334468889999988873 689999999999999999862 24444
Q ss_pred cccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeec
Q 005502 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV 320 (693)
Q Consensus 267 ~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~ 320 (693)
+ .+|.. -|.. +...+++|++++.|++|++||..++++.......
T Consensus 409 l-------~~h~~-~v~~--l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~ 452 (537)
T KOG0274|consen 409 L-------QGHTS-LVSS--LLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGR 452 (537)
T ss_pred h-------cCCcc-cccc--cccccceeEeccccccEEEeecccCceeeeeccC
Confidence 3 34444 2433 3446789999999999999999998877776663
No 79
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=3.5e-22 Score=215.51 Aligned_cols=223 Identities=16% Similarity=0.272 Sum_probs=177.7
Q ss_pred cEEEEEECC-CCCEEEEEeCCCcEEEEECCC---CcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCC
Q 005502 52 CVNAISWNS-KGSLLISGSDDTHINVWSYSS---RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 127 (693)
Q Consensus 52 ~V~~l~~s~-~g~~LaSgs~Dg~I~IWd~~~---~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~ 127 (693)
.++.++|+. +.++|||++..|.|.+||+.. .+.+..+ ..|...|.++.|++.. ..+|++|+.||+|++||++..
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f-~EH~Rs~~~ldfh~te-p~iliSGSQDg~vK~~DlR~~ 166 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVF-NEHERSANKLDFHSTE-PNILISGSQDGTVKCWDLRSK 166 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHh-hhhccceeeeeeccCC-ccEEEecCCCceEEEEeeecc
Confidence 456788886 468999999999999999987 4555666 7899999999999986 789999999999999999975
Q ss_pred CCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceee
Q 005502 128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (693)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 207 (693)
....++.+....|+.++|+|..++.|+++.+.|.|++||+|....+
T Consensus 167 ----------~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~------------------------ 212 (839)
T KOG0269|consen 167 ----------KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRC------------------------ 212 (839)
T ss_pred ----------cccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhH------------------------
Confidence 3466677788999999999999999999999999999999998754
Q ss_pred ecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEE
Q 005502 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 287 (693)
Q Consensus 208 l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~f 287 (693)
......|..+|.|+.|+|+ ..+||||+.|+.|+|||..+..... ..++ +...+|..|.|
T Consensus 213 ~~k~~AH~GpV~c~nwhPn-r~~lATGGRDK~vkiWd~t~~~~~~--------~~tI------------nTiapv~rVkW 271 (839)
T KOG0269|consen 213 EKKLTAHNGPVLCLNWHPN-REWLATGGRDKMVKIWDMTDSRAKP--------KHTI------------NTIAPVGRVKW 271 (839)
T ss_pred HHHhhcccCceEEEeecCC-CceeeecCCCccEEEEeccCCCccc--------eeEE------------eecceeeeeee
Confidence 2223367889999999995 7899999999999999998643211 1122 22347999999
Q ss_pred cCCCCEEE-EEec--CCcEEEEECCCCCcceEEee-cCCCceeEEecc
Q 005502 288 SPNGEEVL-LSYS--GEHVYLMDVNHAGGRAMRYT-VGDASKIMSFTP 331 (693)
Q Consensus 288 spdg~~L~-sgs~--Dg~V~lwDl~~~~~~~~~~~-~~~~~~~~~~~p 331 (693)
-|..++.+ +++. |-.|+|||++.+-.+...+. +.+....++|..
T Consensus 272 RP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 272 RPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDS 319 (839)
T ss_pred ccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccC
Confidence 99887655 4443 78999999999776655554 344455566644
No 80
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.88 E-value=2.9e-21 Score=193.46 Aligned_cols=235 Identities=21% Similarity=0.311 Sum_probs=179.9
Q ss_pred cCcccccchhhhccccceEEeccCCCcEEEEEECCCC---CEEEEEeCCCcEEEEECCCCcEEEE-e--ccCCCcceEEE
Q 005502 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKG---SLLISGSDDTHINVWSYSSRKLLHS-I--ETGHSANVFCT 99 (693)
Q Consensus 26 ~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g---~~LaSgs~Dg~I~IWd~~~~~~~~~-l--~~~h~~~I~sl 99 (693)
++...++|+ ..++..+++.||.++|.+++|.... ..|+++|.|.++++|.++.+..... + ..||...|-+|
T Consensus 123 YDg~~riWd---~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sV 199 (423)
T KOG0313|consen 123 YDGTSRIWD---LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSV 199 (423)
T ss_pred cCCeeEEEe---cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEE
Confidence 345555554 4577899999999999998887543 3699999999999999887643221 1 14999999999
Q ss_pred EEeeCCCCCEEEEEeCCCcEEEEEcCCCCCC--------C-------CCCCCCCCceeeccCCCCeEEEEEecCCCcEEE
Q 005502 100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGR--------G-------LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW 164 (693)
Q Consensus 100 ~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~--------~-------~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~ 164 (693)
...++ +..+++|+.|.+|.||+....... . .....-.|+.++.+|..+|.++.|++ ...+.
T Consensus 200 sv~~s--gtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~y 275 (423)
T KOG0313|consen 200 SVDSS--GTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIY 275 (423)
T ss_pred EecCC--CCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCceE
Confidence 99998 699999999999999994321100 0 01122357888999999999999987 56788
Q ss_pred EEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 005502 165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD 244 (693)
Q Consensus 165 Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD 244 (693)
+++.|-+|+.||+.++.... .+ .....+.|++.+|. .++|++|+.|..||+||
T Consensus 276 S~SwDHTIk~WDletg~~~~-----------~~---------------~~~ksl~~i~~~~~-~~Ll~~gssdr~irl~D 328 (423)
T KOG0313|consen 276 SVSWDHTIKVWDLETGGLKS-----------TL---------------TTNKSLNCISYSPL-SKLLASGSSDRHIRLWD 328 (423)
T ss_pred eecccceEEEEEeeccccee-----------ee---------------ecCcceeEeecccc-cceeeecCCCCceeecC
Confidence 99999999999999876321 11 11347889999996 78999999999999999
Q ss_pred cCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCC-EEEEEecCCcEEEEECCCCC
Q 005502 245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 245 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~-~L~sgs~Dg~V~lwDl~~~~ 312 (693)
.|++.-- ...+.| .+|.+ +|.+|.|+|... .|++++.|+++++||+++..
T Consensus 329 PR~~~gs----------~v~~s~-------~gH~n-wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 329 PRTGDGS----------VVSQSL-------IGHKN-WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred CCCCCCc----------eeEEee-------ecchh-hhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence 9976311 111222 46777 899999999776 55677889999999999965
No 81
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.5e-21 Score=190.68 Aligned_cols=250 Identities=20% Similarity=0.279 Sum_probs=200.1
Q ss_pred cccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 005502 39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 118 (693)
Q Consensus 39 ~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~ 118 (693)
...+.++|.||.+.|+.++.......+.++|.|.+.+||.+++++|+.++ .||.+.|.+|+|+|. +.+++|++.|++
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y-~GH~GSVNsikfh~s--~~L~lTaSGD~t 213 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATY-TGHTGSVNSIKFHNS--GLLLLTASGDET 213 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeee-cccccceeeEEeccc--cceEEEccCCcc
Confidence 45677889999999999999887779999999999999999999999999 899999999999998 799999999999
Q ss_pred EEEEEcC----CCCCCC-------------------------CCCCC-CCCceeeccCCCCeEEEEEecCCCcEEEEEeC
Q 005502 119 VRLFNLS----RFSGRG-------------------------LDDNA-ITPSALYQCHTRRVKKLAVEVGNPHVVWSASE 168 (693)
Q Consensus 119 V~vwdl~----~~~~~~-------------------------~~~~~-~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~ 168 (693)
-+||... .++... .+... --|+..+.+|...|.+..|.. ++..+++++.
T Consensus 214 aHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSW 292 (481)
T KOG0300|consen 214 AHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASW 292 (481)
T ss_pred hHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-Ccceeeeeec
Confidence 9999721 111000 00001 125667889999999999988 7888999999
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCC
Q 005502 169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML 248 (693)
Q Consensus 169 Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~ 248 (693)
|.+..+||+.++..+ ....+|...++.++-+|. ..++++.+.|.+.|+||.|..
T Consensus 293 DRTAnlwDVEtge~v-------------------------~~LtGHd~ELtHcstHpt-QrLVvTsSrDtTFRLWDFRea 346 (481)
T KOG0300|consen 293 DRTANLWDVETGEVV-------------------------NILTGHDSELTHCSTHPT-QRLVVTSSRDTTFRLWDFREA 346 (481)
T ss_pred cccceeeeeccCcee-------------------------ccccCcchhccccccCCc-ceEEEEeccCceeEeccchhh
Confidence 999999999998733 233366778888999997 589999999999999999832
Q ss_pred CCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEE
Q 005502 249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMS 328 (693)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~ 328 (693)
+ ..+..| .||.. .|+++.|..+.+ +++|+.|.+|++||+++...+...+....+.+.++
T Consensus 347 --I----------~sV~VF-------QGHtd-tVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRva 405 (481)
T KOG0300|consen 347 --I----------QSVAVF-------QGHTD-TVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVA 405 (481)
T ss_pred --c----------ceeeee-------ccccc-ceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeeecCCccceeE
Confidence 1 234444 67777 699999998765 78999999999999999887777777777777666
Q ss_pred eccCCCccccc
Q 005502 329 FTPTLNGLELQ 339 (693)
Q Consensus 329 ~~p~~~g~~~~ 339 (693)
.+...+-++++
T Consensus 406 vs~g~~iIAiP 416 (481)
T KOG0300|consen 406 VSKGHPIIAIP 416 (481)
T ss_pred eecCCceEEec
Confidence 66554444433
No 82
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=2.1e-21 Score=200.30 Aligned_cols=224 Identities=21% Similarity=0.346 Sum_probs=180.2
Q ss_pred CcCcccccchhhhccccceEEeccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEee
Q 005502 25 DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103 (693)
Q Consensus 25 ~~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~-g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p 103 (693)
+....+++++ .++-..+..|++|+.+|..+.|+|. ++.|++|++|+.+++||+.+......+ .+|++-|.|.+|+|
T Consensus 87 D~sG~V~vfD--~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l-~~htDYVR~g~~~~ 163 (487)
T KOG0310|consen 87 DESGHVKVFD--MKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAEL-SGHTDYVRCGDISP 163 (487)
T ss_pred CCcCcEEEec--cccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEe-cCCcceeEeecccc
Confidence 3445666666 3444456678999999999999994 678889999999999999988875567 89999999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCC
Q 005502 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (693)
Q Consensus 104 ~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~ 183 (693)
-+ +++++||+.||+|++||++... ..+..+. |..+|..+.+-| ++.+|++++. ..|++||+-++...
T Consensus 164 ~~-~hivvtGsYDg~vrl~DtR~~~---------~~v~eln-hg~pVe~vl~lp-sgs~iasAgG-n~vkVWDl~~G~ql 230 (487)
T KOG0310|consen 164 AN-DHIVVTGSYDGKVRLWDTRSLT---------SRVVELN-HGCPVESVLALP-SGSLIASAGG-NSVKVWDLTTGGQL 230 (487)
T ss_pred CC-CeEEEecCCCceEEEEEeccCC---------ceeEEec-CCCceeeEEEcC-CCCEEEEcCC-CeEEEEEecCCcee
Confidence 86 7899999999999999999642 3355554 899999999999 7788888876 68999999865422
Q ss_pred CCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCc
Q 005502 184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC 263 (693)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~ 263 (693)
+.....|...|+|+.+..+ +..|++|+-|+.|++||+.+.+.+.++..
T Consensus 231 ------------------------l~~~~~H~KtVTcL~l~s~-~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~------- 278 (487)
T KOG0310|consen 231 ------------------------LTSMFNHNKTVTCLRLASD-STRLLSGSLDRHVKVFDTTNYKVVHSWKY------- 278 (487)
T ss_pred ------------------------hhhhhcccceEEEEEeecC-CceEeecccccceEEEEccceEEEEeeec-------
Confidence 2222246778999999996 68999999999999999887665443311
Q ss_pred ccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCC
Q 005502 264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (693)
Q Consensus 264 ~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~ 311 (693)
..+|.+++.+|+++.+++|..||.+.+=+....
T Consensus 279 ---------------~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k 311 (487)
T KOG0310|consen 279 ---------------PGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVK 311 (487)
T ss_pred ---------------ccceeeEEecCCCceEEEecccceeeeehhhcc
Confidence 126999999999999999999998887755543
No 83
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=3.7e-21 Score=197.51 Aligned_cols=248 Identities=19% Similarity=0.320 Sum_probs=190.6
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCC
Q 005502 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (693)
Q Consensus 50 ~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~ 129 (693)
.++|+||.-+|+|.+|+.|...|.|.+|.+.+|..+..+ .+|=.+|+|+.|+.+ |.+|+||+.||.|++|.+...-.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~-~aHYQ~ITcL~fs~d--gs~iiTgskDg~V~vW~l~~lv~ 157 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL-SAHYQSITCLKFSDD--GSHIITGSKDGAVLVWLLTDLVS 157 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHH-HhhccceeEEEEeCC--CcEEEecCCCccEEEEEEEeecc
Confidence 578999999999999999989999999999999999988 899999999999988 79999999999999999874211
Q ss_pred CCCCCCCCCCceeeccCCCCeEEEEEecC-CCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeee
Q 005502 130 RGLDDNAITPSALYQCHTRRVKKLAVEVG-NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 208 (693)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 208 (693)
.......+|...|..|+-+|+++...+. -...++|+|.|.++++||+..+... ...
T Consensus 158 -a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL--------------lti-------- 214 (476)
T KOG0646|consen 158 -ADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL--------------LTI-------- 214 (476)
T ss_pred -cccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceee--------------EEE--------
Confidence 1122245889999999999999999873 2347889999999999999876422 111
Q ss_pred cCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCccc-ccC--CCCCCcccccccCccccCCCCc-cceEE
Q 005502 209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC-QKR--MSPPPCVNYFCPMHLSEHGRSS-LHLTH 284 (693)
Q Consensus 209 ~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~h~~-~~V~~ 284 (693)
.....+++++++|. ...+.+|+.+|.|.+.++........- ..+ .......+.+ .||.+ ..|++
T Consensus 215 ----~fp~si~av~lDpa-e~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~-------~Gh~~~~~ITc 282 (476)
T KOG0646|consen 215 ----TFPSSIKAVALDPA-ERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVL-------VGHENESAITC 282 (476)
T ss_pred ----ecCCcceeEEEccc-ccEEEecCCcceEEeeehhcCCcccccccccccccccceeeee-------ccccCCcceeE
Confidence 11357899999997 689999999999999998876532210 000 0000111111 34444 47999
Q ss_pred EEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCc
Q 005502 285 VTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNG 335 (693)
Q Consensus 285 v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~g 335 (693)
++.+-||..|++|+.||.|.|||+.+.++.........+++.+.+.|-..+
T Consensus 283 Lais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~ 333 (476)
T KOG0646|consen 283 LAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERG 333 (476)
T ss_pred EEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccc
Confidence 999999999999999999999999996655554445667777777665433
No 84
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=2.2e-21 Score=194.09 Aligned_cols=249 Identities=20% Similarity=0.288 Sum_probs=183.1
Q ss_pred cceEEeccCCCcEEEEEECCCC--CEEEEEeCCCcEEEEECCC----------------CcEEEEeccCCCcceEEEEEe
Q 005502 41 SQERELEGHQGCVNAISWNSKG--SLLISGSDDTHINVWSYSS----------------RKLLHSIETGHSANVFCTKFV 102 (693)
Q Consensus 41 ~~~~~l~gH~~~V~~l~~s~~g--~~LaSgs~Dg~I~IWd~~~----------------~~~~~~l~~~h~~~I~sl~f~ 102 (693)
......-+|.++|+.+.-.+-| .+.|+-+..|.|.||++.. .+++.++ .+|.+.=+.|+|+
T Consensus 142 ~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~-~ghk~EGy~LdWS 220 (440)
T KOG0302|consen 142 QIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTF-NGHKGEGYGLDWS 220 (440)
T ss_pred cccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEe-cccCccceeeecc
Confidence 3344455799999999988854 5777888999999999853 2456666 6899999999999
Q ss_pred eCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCC
Q 005502 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (693)
Q Consensus 103 p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~ 182 (693)
|-. ...|+||..-+.|++|...++.-.. -...+.+|+..|-.|+|+|....+|+|||.||+|+|||+|.+..
T Consensus 221 p~~-~g~LlsGDc~~~I~lw~~~~g~W~v-------d~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~ 292 (440)
T KOG0302|consen 221 PIK-TGRLLSGDCVKGIHLWEPSTGSWKV-------DQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK 292 (440)
T ss_pred ccc-ccccccCccccceEeeeeccCceee-------cCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc
Confidence 964 4568888888999999998743211 12345679999999999999999999999999999999998742
Q ss_pred CCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCC
Q 005502 183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP 262 (693)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~ 262 (693)
.+ | +. ...|...|+-|+|+...+ +||+|+.||+++|||+|..+.- .
T Consensus 293 ~~--------~--------------~~-~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~----------~ 338 (440)
T KOG0302|consen 293 KA--------A--------------VS-TKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSG----------Q 338 (440)
T ss_pred cc--------e--------------eE-eeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCC----------C
Confidence 20 0 11 135667899999999865 9999999999999999976532 1
Q ss_pred cccccccCccccCCCCccceEEEEEcCCC-CEEEEEecCCcEEEEECCCCCc----------------ceEEeec--CCC
Q 005502 263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNHAGG----------------RAMRYTV--GDA 323 (693)
Q Consensus 263 ~~~~~~~~~~~~~~h~~~~V~~v~fspdg-~~L~sgs~Dg~V~lwDl~~~~~----------------~~~~~~~--~~~ 323 (693)
.+..| ..|.. +|++|.|+|.. ..|++++.|.+|.|||+.--.- ++.+|.| ..-
T Consensus 339 pVA~f-------k~Hk~-pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke 410 (440)
T KOG0302|consen 339 PVATF-------KYHKA-PITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKE 410 (440)
T ss_pred cceeE-------EeccC-CeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhH
Confidence 22233 23444 79999999865 5677888899999999865211 1123332 234
Q ss_pred ceeEEeccCCCcccccC
Q 005502 324 SKIMSFTPTLNGLELQP 340 (693)
Q Consensus 324 ~~~~~~~p~~~g~~~~~ 340 (693)
.+.+.|++..+|..+.+
T Consensus 411 ~KevhWH~QiPG~lvsT 427 (440)
T KOG0302|consen 411 VKEVHWHRQIPGLLVST 427 (440)
T ss_pred hhhheeccCCCCeEEEe
Confidence 45566777776664443
No 85
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.87 E-value=1.2e-21 Score=191.74 Aligned_cols=205 Identities=22% Similarity=0.457 Sum_probs=172.5
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEec-------cCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 005502 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-------TGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (693)
Q Consensus 48 gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~-------~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~ 120 (693)
|...-+-|..|+|||++|++||.||.|-||++.+|+..+.+. .-+...|.|+.|+.++ .++++|+.||.|+
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs--EMlAsGsqDGkIK 288 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS--EMLASGSQDGKIK 288 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccH--HHhhccCcCCcEE
Confidence 455678899999999999999999999999999998665542 2477899999999994 8999999999999
Q ss_pred EEEcCCCCCCCCCCCCCCCceeec-cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEe
Q 005502 121 LFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (693)
Q Consensus 121 vwdl~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~ 199 (693)
||.+.++ .++..|. +|+..|+++.|+.+ +..+++++.|.+||+.-+.+++
T Consensus 289 vWri~tG----------~ClRrFdrAHtkGvt~l~FSrD-~SqiLS~sfD~tvRiHGlKSGK------------------ 339 (508)
T KOG0275|consen 289 VWRIETG----------QCLRRFDRAHTKGVTCLSFSRD-NSQILSASFDQTVRIHGLKSGK------------------ 339 (508)
T ss_pred EEEEecc----------hHHHHhhhhhccCeeEEEEccC-cchhhcccccceEEEeccccch------------------
Confidence 9999975 4566665 89999999999994 4566699999999999998876
Q ss_pred ccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCc
Q 005502 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (693)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 279 (693)
.+..+.+|...|+...|.++ |+.+++++.||+|++|+..+. .|+.+|.|.. ..
T Consensus 340 -------~LKEfrGHsSyvn~a~ft~d-G~~iisaSsDgtvkvW~~Ktt-------------eC~~Tfk~~~------~d 392 (508)
T KOG0275|consen 340 -------CLKEFRGHSSYVNEATFTDD-GHHIISASSDGTVKVWHGKTT-------------ECLSTFKPLG------TD 392 (508)
T ss_pred -------hHHHhcCccccccceEEcCC-CCeEEEecCCccEEEecCcch-------------hhhhhccCCC------Cc
Confidence 34456678889999999997 789999999999999998875 5777775543 23
Q ss_pred cceEEEEEcCCC-CEEEEEecCCcEEEEECCC
Q 005502 280 LHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 280 ~~V~~v~fspdg-~~L~sgs~Dg~V~lwDl~~ 310 (693)
.+|+++..-|.+ .+++++...++|++.++..
T Consensus 393 ~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG 424 (508)
T KOG0275|consen 393 YPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG 424 (508)
T ss_pred ccceeEEEcCCCCceEEEEcCCCeEEEEeccc
Confidence 478888887754 6788888899999999987
No 86
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=3.4e-20 Score=173.58 Aligned_cols=234 Identities=22% Similarity=0.283 Sum_probs=173.2
Q ss_pred eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEE-----EEeccCCCcceEEEEEee--CCCCCEEEEEe-CCC
Q 005502 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL-----HSIETGHSANVFCTKFVP--ETSDELVVSGA-GDA 117 (693)
Q Consensus 46 l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~-----~~l~~~h~~~I~sl~f~p--~~~~~~l~sgs-~Dg 117 (693)
-+.|.+.|.|.+|+|+|.+||+|+.|.+|++.-+....+. ..+ .-|.+.|..++|.. .+.+.+|++++ .|.
T Consensus 85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~-nmhdgtirdl~fld~~~s~~~il~s~gagdc 163 (350)
T KOG0641|consen 85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEF-NMHDGTIRDLAFLDDPESGGAILASAGAGDC 163 (350)
T ss_pred ccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceee-eecCCceeeeEEecCCCcCceEEEecCCCcc
Confidence 3578999999999999999999999999999876543221 233 45899999999974 44456777765 466
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEE
Q 005502 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (693)
Q Consensus 118 ~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l 197 (693)
.|.+-|...+ .+.+.+.+|++.|.++-- - ++.+|++|+.|.+|++||+|-...+ +++
T Consensus 164 ~iy~tdc~~g----------~~~~a~sghtghilalys-w-n~~m~~sgsqdktirfwdlrv~~~v-----------~~l 220 (350)
T KOG0641|consen 164 KIYITDCGRG----------QGFHALSGHTGHILALYS-W-NGAMFASGSQDKTIRFWDLRVNSCV-----------NTL 220 (350)
T ss_pred eEEEeecCCC----------CcceeecCCcccEEEEEE-e-cCcEEEccCCCceEEEEeeecccee-----------eec
Confidence 7777777655 568889999999988732 2 5689999999999999999976533 222
Q ss_pred EeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCC
Q 005502 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 277 (693)
Q Consensus 198 ~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 277 (693)
-.-.. ...-....|.++++.|. +.+|++|-.|....+||+|-+.++. .| +.|
T Consensus 221 ~~~~~-------~~glessavaav~vdps-grll~sg~~dssc~lydirg~r~iq-------------~f-------~ph 272 (350)
T KOG0641|consen 221 DNDFH-------DGGLESSAVAAVAVDPS-GRLLASGHADSSCMLYDIRGGRMIQ-------------RF-------HPH 272 (350)
T ss_pred cCccc-------CCCcccceeEEEEECCC-cceeeeccCCCceEEEEeeCCceee-------------ee-------CCC
Confidence 11110 11112457899999997 7999999999999999999875443 33 223
Q ss_pred CccceEEEEEcCCCCEEEEEecCCcEEEEECCCCC---cce-EEeecCCCceeEEeccC
Q 005502 278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG---GRA-MRYTVGDASKIMSFTPT 332 (693)
Q Consensus 278 ~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~---~~~-~~~~~~~~~~~~~~~p~ 332 (693)
.. .|.+|.|+|...||++++.|..|++-|++..- .+. +.-.+.+......|+|.
T Consensus 273 sa-dir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~ 330 (350)
T KOG0641|consen 273 SA-DIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQ 330 (350)
T ss_pred cc-ceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCc
Confidence 33 59999999999999999999999999998632 222 22334445555667775
No 87
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=4.3e-21 Score=196.63 Aligned_cols=237 Identities=15% Similarity=0.219 Sum_probs=183.7
Q ss_pred ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCC
Q 005502 47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 126 (693)
Q Consensus 47 ~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~ 126 (693)
++|.+.|.+++.++||++||+|+.|..|.||+..+.+.++.+ .+|.+.|.+++|-..+ +-+++++.|++|++|++..
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~-~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~ 275 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVF-KGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQ 275 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcc-cccccceeeeeeecCc--cceeeeecCCceEEEehhH
Confidence 489999999999999999999999999999999999999998 8999999999999874 7899999999999999996
Q ss_pred CCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCcee
Q 005502 127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206 (693)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 206 (693)
. ..+.++.+|.+.|..|.... -..++-+|+.|+++++|++..... .++
T Consensus 276 ~----------s~vetlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~eesq-------------lif-------- 323 (479)
T KOG0299|consen 276 L----------SYVETLYGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPEESQ-------------LIF-------- 323 (479)
T ss_pred h----------HHHHHHhCCccceeeechhc-ccceEEeccccceeEEEeccccce-------------eee--------
Confidence 5 45788899999999998775 456666677999999999954331 111
Q ss_pred eecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEE
Q 005502 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT 286 (693)
Q Consensus 207 ~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~ 286 (693)
.++...+-|++|-.+ ..|++|+.+|.|.+|++-..+|+........-.+-+ ..- ..+.+|++|+
T Consensus 324 -----rg~~~sidcv~~In~--~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~--------~~~-~~~~Witsla 387 (479)
T KOG0299|consen 324 -----RGGEGSIDCVAFIND--EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPEL--------DPV-NGNFWITSLA 387 (479)
T ss_pred -----eCCCCCeeeEEEecc--cceeeccCCceEEEeeecccCceeEeeccccccCCc--------ccc-ccccceeeeE
Confidence 123457888888774 589999999999999999988887654332211100 000 1114899999
Q ss_pred EcCCCCEEEEEecCCcEEEEECCCCCcceEE---eecCCCceeEEeccCCC
Q 005502 287 FSPNGEEVLLSYSGEHVYLMDVNHAGGRAMR---YTVGDASKIMSFTPTLN 334 (693)
Q Consensus 287 fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~---~~~~~~~~~~~~~p~~~ 334 (693)
..|....+++|+.+|.|+||-+..+-..... +....-++.++|+++..
T Consensus 388 ~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk 438 (479)
T KOG0299|consen 388 VIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGK 438 (479)
T ss_pred ecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCC
Confidence 9999999999999999999999986332211 12223344555555444
No 88
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=5.6e-21 Score=180.24 Aligned_cols=243 Identities=21% Similarity=0.277 Sum_probs=184.1
Q ss_pred CcCcccccchhhhccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeC
Q 005502 25 DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 104 (693)
Q Consensus 25 ~~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~ 104 (693)
..++++++|. ..+..+++++.||...|..++.+.|+..|++|+.|+.|.+||+.+|+.++.+ .+|.+.|..++|+.+
T Consensus 36 GsdrtvrLWN--p~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~-rgH~aqVNtV~fNee 112 (307)
T KOG0316|consen 36 GSDRTVRLWN--PLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRF-RGHLAQVNTVRFNEE 112 (307)
T ss_pred CCCceEEeec--ccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeec-ccccceeeEEEecCc
Confidence 3557788876 4567789999999999999999999999999999999999999999999999 799999999999998
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCC
Q 005502 105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP 184 (693)
Q Consensus 105 ~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~ 184 (693)
+ ..+++|+.|.+|++||-+..+ .+|++++......|.+|.++ .+.|++|+.||++|.||+|.++...
T Consensus 113 s--SVv~SgsfD~s~r~wDCRS~s--------~ePiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~l~s 179 (307)
T KOG0316|consen 113 S--SVVASGSFDSSVRLWDCRSRS--------FEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGTLSS 179 (307)
T ss_pred c--eEEEeccccceeEEEEcccCC--------CCccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeecceeeh
Confidence 4 899999999999999999654 27899999889999999995 4789999999999999999886442
Q ss_pred CCCCCC---------ccc--------ceEEEeccCCceeeecCCCCCcc--ceEEEEEcCCCCcEEEEEeCCCcEEEEec
Q 005502 185 PAGSSH---------QEC--------RNILLDLRCGAKRSLADPPKQTL--SLKSCDISSTRPHLLLVGGSDAFARLYDR 245 (693)
Q Consensus 185 ~~~~~~---------~~~--------~~~l~~~~~~~~~~l~~~~~~~~--~v~sl~~sp~~~~~Latgs~Dg~I~lwD~ 245 (693)
.-...+ ..| ...+++-.+|.. +....+|.. .-..++++.. ...+++|+.||.|++||+
T Consensus 180 Dy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGkl--L~sYkGhkn~eykldc~l~qs-dthV~sgSEDG~Vy~wdL 256 (307)
T KOG0316|consen 180 DYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKL--LKSYKGHKNMEYKLDCCLNQS-DTHVFSGSEDGKVYFWDL 256 (307)
T ss_pred hhcCCcceeEEecCCCCEEEEeeccceeeecccchhHH--HHHhcccccceeeeeeeeccc-ceeEEeccCCceEEEEEe
Confidence 111111 111 122334344332 222233322 2234556665 478999999999999999
Q ss_pred CCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEE
Q 005502 246 RMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMD 307 (693)
Q Consensus 246 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwD 307 (693)
-....+.++.. +....|++++++|.-.-|+++.. +.+++|-
T Consensus 257 vd~~~~sk~~~--------------------~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~ 297 (307)
T KOG0316|consen 257 VDETQISKLSV--------------------VSTVIVTDLSCHPTMDDFITATG-HGDLFWY 297 (307)
T ss_pred ccceeeeeecc--------------------CCceeEEeeecccCccceeEecC-Cceecee
Confidence 88765544321 11113899999999887777754 3455554
No 89
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.87 E-value=1.5e-20 Score=187.55 Aligned_cols=251 Identities=15% Similarity=0.207 Sum_probs=191.7
Q ss_pred ccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 005502 40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (693)
Q Consensus 40 l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V 119 (693)
-.-+.+|..|++.|.+++.+|+.+++|||+.|....||+..++.....+ .+|...|+++.|+.+ +.+||||..+|.|
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~el-tgHKDSVt~~~Fshd--gtlLATGdmsG~v 130 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGEL-TGHKDSVTCCSFSHD--GTLLATGDMSGKV 130 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEe-cCCCCceEEEEEccC--ceEEEecCCCccE
Confidence 3456789999999999999999999999999999999999999988888 899999999999998 7999999999999
Q ss_pred EEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEe
Q 005502 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (693)
Q Consensus 120 ~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~ 199 (693)
+||...++. ....+..--..+--+.|+| -..+|+.|+.||.|-+|.+.+...+
T Consensus 131 ~v~~~stg~----------~~~~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~~~---------------- 183 (399)
T KOG0296|consen 131 LVFKVSTGG----------EQWKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQALC---------------- 183 (399)
T ss_pred EEEEcccCc----------eEEEeecccCceEEEEecc-cccEEEeecCCCcEEEEECCCccee----------------
Confidence 999999752 2334433456778889999 7789999999999999999774322
Q ss_pred ccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccC-CCCCCcccccccCc-------
Q 005502 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR-MSPPPCVNYFCPMH------- 271 (693)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~-~~~~~~~~~~~~~~------- 271 (693)
..+.+|..++++-.|.|+ |+.+++|..||+|++|++.+++|+...... ..+.+|+..-...+
T Consensus 184 ---------kv~~Gh~~~ct~G~f~pd-GKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~ 253 (399)
T KOG0296|consen 184 ---------KVMSGHNSPCTCGEFIPD-GKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS 253 (399)
T ss_pred ---------eEecCCCCCcccccccCC-CceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC
Confidence 223357788999999998 899999999999999999999987665421 11112221111111
Q ss_pred ------------------------cc-cCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCcee
Q 005502 272 ------------------------LS-EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKI 326 (693)
Q Consensus 272 ------------------------~~-~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~ 326 (693)
+. ...+....|-++.|+..=+..++|+-||+|.|||+.... ......+...+..
T Consensus 254 e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~-~R~~c~he~~V~~ 332 (399)
T KOG0296|consen 254 EGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST-LRHICEHEDGVTK 332 (399)
T ss_pred CccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch-hheeccCCCceEE
Confidence 00 011111123344444555677888889999999999844 5666667777788
Q ss_pred EEecc
Q 005502 327 MSFTP 331 (693)
Q Consensus 327 ~~~~p 331 (693)
+.|-+
T Consensus 333 l~w~~ 337 (399)
T KOG0296|consen 333 LKWLN 337 (399)
T ss_pred EEEcC
Confidence 88877
No 90
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.1e-21 Score=207.99 Aligned_cols=237 Identities=19% Similarity=0.232 Sum_probs=190.6
Q ss_pred ceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC--cEEEEeccCCCcceEEEEE-eeCCCCCEEEEEeCCCc
Q 005502 42 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR--KLLHSIETGHSANVFCTKF-VPETSDELVVSGAGDAE 118 (693)
Q Consensus 42 ~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~--~~~~~l~~~h~~~I~sl~f-~p~~~~~~l~sgs~Dg~ 118 (693)
.+..++.|.+-|+.|....+|+.|+|+|.|.+|++|+...+ -++.++ ..|.+-|.|+++ .++ ..++|+|+.|+.
T Consensus 65 ~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~sti-r~H~DYVkcla~~ak~--~~lvaSgGLD~~ 141 (735)
T KOG0308|consen 65 YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTI-RTHKDYVKCLAYIAKN--NELVASGGLDRK 141 (735)
T ss_pred hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhh-hcccchheeeeecccC--ceeEEecCCCcc
Confidence 46678999999999999999999999999999999999877 566777 689999999999 555 589999999999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeec-cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEE
Q 005502 119 VRLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (693)
Q Consensus 119 V~vwdl~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l 197 (693)
|.+||++.+...........+...+. ++..+|++++.++ .+.+|++|+..+.+++||.|+.+..
T Consensus 142 IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~ki-------------- 206 (735)
T KOG0308|consen 142 IFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCKKI-------------- 206 (735)
T ss_pred EEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceEEEecCcccceEEeccccccce--------------
Confidence 99999996533222111222233333 8899999999998 5689999999999999999987632
Q ss_pred EeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCC
Q 005502 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 277 (693)
Q Consensus 198 ~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 277 (693)
....+|+..|..+-.+++ |..++++++||+|++||++.. .|+.++ ..|
T Consensus 207 -----------mkLrGHTdNVr~ll~~dD-Gt~~ls~sSDgtIrlWdLgqQ-------------rCl~T~-------~vH 254 (735)
T KOG0308|consen 207 -----------MKLRGHTDNVRVLLVNDD-GTRLLSASSDGTIRLWDLGQQ-------------RCLATY-------IVH 254 (735)
T ss_pred -----------eeeeccccceEEEEEcCC-CCeEeecCCCceEEeeecccc-------------ceeeeE-------Eec
Confidence 223378889999999997 789999999999999999864 566665 335
Q ss_pred CccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEe
Q 005502 278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSF 329 (693)
Q Consensus 278 ~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~ 329 (693)
.. .|+++..+|+-.++++|+.||.|+.=|+.+......++...+++..+..
T Consensus 255 ~e-~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~ 305 (735)
T KOG0308|consen 255 KE-GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHL 305 (735)
T ss_pred cC-ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhh
Confidence 55 3999999999999999999999999999997555555555554444333
No 91
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.86 E-value=4.5e-22 Score=196.63 Aligned_cols=122 Identities=21% Similarity=0.202 Sum_probs=111.7
Q ss_pred CcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCC
Q 005502 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS 438 (693)
Q Consensus 359 ~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp 438 (693)
....++.||.+||++.+.++ |.+||.+|++||++.|.+ +++|+|||++|.+++. |..|+.||..||++||
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~-Y~eAv~kY~~AI~l~P~n------AVyycNRAAAy~~Lg~---~~~AVkDce~Al~iDp 146 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKD-YQEAVDKYTEAIELDPTN------AVYYCNRAAAYSKLGE---YEDAVKDCESALSIDP 146 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHhcCCCc------chHHHHHHHHHHHhcc---hHHHHHHHHHHHhcCh
Confidence 44678999999999999999 999999999999999999 9999999999999866 9999999999999999
Q ss_pred CCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHHHHHHHHH
Q 005502 439 SSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAA 490 (693)
Q Consensus 439 ~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l~~~i~~ 490 (693)
++.|||.|++.|++.+|++++|.+.|++++.++|+|....+.|+..+..+.+
T Consensus 147 ~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 147 HYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999998766666555554443
No 92
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.86 E-value=7.9e-21 Score=196.52 Aligned_cols=245 Identities=15% Similarity=0.192 Sum_probs=180.6
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEe-----------ccCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 005502 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI-----------ETGHSANVFCTKFVPETSDELVVSGAGDA 117 (693)
Q Consensus 49 H~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l-----------~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg 117 (693)
-...|++++|++.|..|++.+....++|+|-.....+... ..||...++|.+|+|.+ -..|+|++.||
T Consensus 213 E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~-k~~FlT~s~Dg 291 (641)
T KOG0772|consen 213 ETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDN-KEEFLTCSYDG 291 (641)
T ss_pred cccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCc-ccceEEecCCC
Confidence 4568999999999998888888889999997654433322 25899999999999997 57899999999
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCceeec-----cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcc
Q 005502 118 EVRLFNLSRFSGRGLDDNAITPSALYQ-----CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE 192 (693)
Q Consensus 118 ~V~vwdl~~~~~~~~~~~~~~~~~~~~-----~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~ 192 (693)
++||||+..... ...+++ +..-.|+.++|+| ++.+||+|..||.|.+||.+....-
T Consensus 292 tlRiWdv~~~k~---------q~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~--------- 352 (641)
T KOG0772|consen 292 TLRIWDVNNTKS---------QLQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVR--------- 352 (641)
T ss_pred cEEEEecCCchh---------heeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCcccc---------
Confidence 999999986432 122222 3345789999999 6788999999999999998654321
Q ss_pred cceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCcc
Q 005502 193 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL 272 (693)
Q Consensus 193 ~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (693)
..+ .+.........|+||+||++ +++|++-+.|+++++||+|..+ .|+..+....
T Consensus 353 ---p~~--------~vk~AH~~g~~Itsi~FS~d-g~~LlSRg~D~tLKvWDLrq~k------------kpL~~~tgL~- 407 (641)
T KOG0772|consen 353 ---PVM--------KVKDAHLPGQDITSISFSYD-GNYLLSRGFDDTLKVWDLRQFK------------KPLNVRTGLP- 407 (641)
T ss_pred ---cce--------EeeeccCCCCceeEEEeccc-cchhhhccCCCceeeeeccccc------------cchhhhcCCC-
Confidence 000 11111122348999999997 7999999999999999999754 2232221111
Q ss_pred ccCCCCccceEEEEEcCCCCEEEEEec------CCcEEEEECCCCCcceEEeecCCCceeEEeccCCCcccccCCcc
Q 005502 273 SEHGRSSLHLTHVTFSPNGEEVLLSYS------GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIH 343 (693)
Q Consensus 273 ~~~~h~~~~V~~v~fspdg~~L~sgs~------Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~ 343 (693)
...+-+.++|||+.+.|++|.. -|.+++||..+-.....+.-..-.+....|+|..|.+-.....+
T Consensus 408 -----t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG 479 (641)
T KOG0772|consen 408 -----TPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDG 479 (641)
T ss_pred -----ccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCC
Confidence 1124678999999999999876 36799999998665555555555566678999998886655544
No 93
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=6.9e-21 Score=186.12 Aligned_cols=225 Identities=23% Similarity=0.355 Sum_probs=188.2
Q ss_pred CCcCcccccchhhhccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEC------CC----------------
Q 005502 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSY------SS---------------- 81 (693)
Q Consensus 24 ~~~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~------~~---------------- 81 (693)
...+++.++|. +.+..++.++.||.|.||||+|++.+.+++++|.|++..||.. ..
T Consensus 166 ASADhTA~iWs--~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~s 243 (481)
T KOG0300|consen 166 ASADHTARIWS--LESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHS 243 (481)
T ss_pred cccccceeEEe--eccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcc
Confidence 34456777775 7788999999999999999999999999999999999999962 11
Q ss_pred ------------------CcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceee
Q 005502 82 ------------------RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY 143 (693)
Q Consensus 82 ------------------~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~ 143 (693)
..++..+ ++|.+.|.+..|... ++.++|++.|.+..+||++++ +++..+
T Consensus 244 De~~~d~d~~~~sD~~tiRvPl~~l-tgH~~vV~a~dWL~g--g~Q~vTaSWDRTAnlwDVEtg----------e~v~~L 310 (481)
T KOG0300|consen 244 DEHNRDTDSSEKSDGHTIRVPLMRL-TGHRAVVSACDWLAG--GQQMVTASWDRTANLWDVETG----------EVVNIL 310 (481)
T ss_pred cccccccccccccCCceeeeeeeee-eccccceEehhhhcC--cceeeeeeccccceeeeeccC----------ceeccc
Confidence 0133445 789999999999987 799999999999999999976 678999
Q ss_pred ccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEE
Q 005502 144 QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI 223 (693)
Q Consensus 144 ~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~ 223 (693)
.+|....+.++.+| ...++++++.|.+.++||+|..- ..+..+.+|...|+++.|
T Consensus 311 tGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI------------------------~sV~VFQGHtdtVTS~vF 365 (481)
T KOG0300|consen 311 TGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAI------------------------QSVAVFQGHTDTVTSVVF 365 (481)
T ss_pred cCcchhccccccCC-cceEEEEeccCceeEeccchhhc------------------------ceeeeecccccceeEEEE
Confidence 99999999999999 66899999999999999999531 134445678899999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEecCCCC-CCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCc
Q 005502 224 SSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEH 302 (693)
Q Consensus 224 sp~~~~~Latgs~Dg~I~lwD~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~ 302 (693)
+.+ ..+++|+.|.+|++||+++.. ++.++ ....+++.++.+..++.|+.-..+.+
T Consensus 366 ~~d--d~vVSgSDDrTvKvWdLrNMRsplATI----------------------RtdS~~NRvavs~g~~iIAiPhDNRq 421 (481)
T KOG0300|consen 366 NTD--DRVVSGSDDRTVKVWDLRNMRSPLATI----------------------RTDSPANRVAVSKGHPIIAIPHDNRQ 421 (481)
T ss_pred ecC--CceeecCCCceEEEeeeccccCcceee----------------------ecCCccceeEeecCCceEEeccCCce
Confidence 985 589999999999999999753 22222 22336899999999999999999999
Q ss_pred EEEEECCCCC
Q 005502 303 VYLMDVNHAG 312 (693)
Q Consensus 303 V~lwDl~~~~ 312 (693)
|+|||++...
T Consensus 422 vRlfDlnG~R 431 (481)
T KOG0300|consen 422 VRLFDLNGNR 431 (481)
T ss_pred EEEEecCCCc
Confidence 9999999854
No 94
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.86 E-value=6.7e-22 Score=182.77 Aligned_cols=128 Identities=25% Similarity=0.220 Sum_probs=118.8
Q ss_pred CcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCC
Q 005502 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS 438 (693)
Q Consensus 359 ~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp 438 (693)
....+..+|.+||.+|+.|. |..|...|+.||+.+|.. ..+.+++||+|||+|++|++. +.+||.||.+||+|+|
T Consensus 91 ~~~kad~lK~EGN~~F~ngd-yeeA~skY~~Ale~cp~~-~~e~rsIly~Nraaa~iKl~k---~e~aI~dcsKaiel~p 165 (271)
T KOG4234|consen 91 AIEKADSLKKEGNELFKNGD-YEEANSKYQEALESCPST-STEERSILYSNRAAALIKLRK---WESAIEDCSKAIELNP 165 (271)
T ss_pred HHHHHHHHHHHHHHhhhccc-HHHHHHHHHHHHHhCccc-cHHHHHHHHhhhHHHHHHhhh---HHHHHHHHHhhHhcCc
Confidence 34567889999999999999 999999999999999976 347789999999999999766 8999999999999999
Q ss_pred CCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHHHHHHHHHH
Q 005502 439 SSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAA 491 (693)
Q Consensus 439 ~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l~~~i~~~ 491 (693)
.+.||+.|||.||..+.+|++|+++|+++++++|+..++++.+.+|...|.+.
T Consensus 166 ty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~er 218 (271)
T KOG4234|consen 166 TYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINER 218 (271)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHH
Confidence 99999999999999999999999999999999999999999999998887664
No 95
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=8.1e-21 Score=203.28 Aligned_cols=224 Identities=22% Similarity=0.291 Sum_probs=185.0
Q ss_pred CcCcccccchhhhccccceEEecc-CCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEee
Q 005502 25 DVNHSLQMHSSLVRRLSQERELEG-HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103 (693)
Q Consensus 25 ~~~~~l~~~~~~i~~l~~~~~l~g-H~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p 103 (693)
.....+++|+ +...+.+.++.+ |...|-+|+|+ +..+.+|+.|+.|.++|+...+.......+|...|..++|++
T Consensus 236 ~~~g~v~iwD--~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~ 311 (484)
T KOG0305|consen 236 TSDGTVQIWD--VKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP 311 (484)
T ss_pred ecCCeEEEEe--hhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC
Confidence 4557778876 455566777888 99999999998 678999999999999999877655543379999999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEe--CCCcEEEEeCCCCC
Q 005502 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS--EDGTLRQHDFRQGS 181 (693)
Q Consensus 104 ~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs--~Dg~V~iwDlr~~~ 181 (693)
+ +.+||+|+.|+.|.|||.... .+...+..|...|+.++|+|-...+||+|+ .|++|++||+.++.
T Consensus 312 d--~~~lASGgnDN~~~Iwd~~~~----------~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~ 379 (484)
T KOG0305|consen 312 D--GNQLASGGNDNVVFIWDGLSP----------EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA 379 (484)
T ss_pred C--CCeeccCCCccceEeccCCCc----------cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc
Confidence 9 799999999999999999543 678888999999999999999999999986 59999999999876
Q ss_pred CCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEE-EeCCCcEEEEecCCCCCCcccccCCCC
Q 005502 182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV-GGSDAFARLYDRRMLPPLTSCQKRMSP 260 (693)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Lat-gs~Dg~I~lwD~r~~~~~~~~~~~~~~ 260 (693)
....+ .....|.+|.|++...+++.+ |..+..|.||+..+.+++..+
T Consensus 380 ~i~~v--------------------------dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l------ 427 (484)
T KOG0305|consen 380 RIDSV--------------------------DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAEL------ 427 (484)
T ss_pred Eeccc--------------------------ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeee------
Confidence 33111 224579999999975455554 456789999999886544332
Q ss_pred CCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCC
Q 005502 261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (693)
Q Consensus 261 ~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~ 311 (693)
.+|.. .|..++++|||..+++|+.|+++++|++-..
T Consensus 428 --------------~gH~~-RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 428 --------------LGHTS-RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred --------------cCCcc-eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 45666 5999999999999999999999999999884
No 96
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=3.2e-20 Score=181.92 Aligned_cols=264 Identities=14% Similarity=0.109 Sum_probs=188.2
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCC
Q 005502 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (693)
Q Consensus 50 ~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~ 129 (693)
.+.|.++.|+|.+..|+.+++||.+++||.........+ .|..++.+++|.+. ..+++|+.||.|+.+|++.+
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~--~~~~plL~c~F~d~---~~~~~G~~dg~vr~~Dln~~-- 85 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF--KHGAPLLDCAFADE---STIVTGGLDGQVRRYDLNTG-- 85 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe--ecCCceeeeeccCC---ceEEEeccCceEEEEEecCC--
Confidence 678999999999999999999999999999988666666 68899999999986 68999999999999999974
Q ss_pred CCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCC----------------CCCCccc
Q 005502 130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA----------------GSSHQEC 193 (693)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~----------------~~~~~~~ 193 (693)
....+..|...|.+|...+ ....+++||.|++|++||.|........ ..+..+.
T Consensus 86 ---------~~~~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r 155 (323)
T KOG1036|consen 86 ---------NEDQIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDR 155 (323)
T ss_pred ---------cceeeccCCCceEEEEeec-cCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCc
Confidence 3456677999999999998 5678889999999999999963322110 0111222
Q ss_pred ceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccc
Q 005502 194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 273 (693)
Q Consensus 194 ~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (693)
...+||++.-..........-...+.|+++.|. +.=+++++-||.|.+=.+.......+. ...-+|-... .
T Consensus 156 ~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn-~eGy~~sSieGRVavE~~d~s~~~~sk---kyaFkCHr~~-----~ 226 (323)
T KOG1036|consen 156 KVLIYDLRNLDEPFQRRESSLKYQTRCVALVPN-GEGYVVSSIEGRVAVEYFDDSEEAQSK---KYAFKCHRLS-----E 226 (323)
T ss_pred eEEEEEcccccchhhhccccceeEEEEEEEecC-CCceEEEeecceEEEEccCCchHHhhh---ceeEEeeecc-----c
Confidence 345667766544333333344567899999995 677899999999988666543111000 0000111100 0
Q ss_pred cCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCccccc
Q 005502 274 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQ 339 (693)
Q Consensus 274 ~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~ 339 (693)
......++|++|+|+|--..|+||+.||.|.+||+.+.+....+..-...+..++|+-+...+++.
T Consensus 227 ~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia 292 (323)
T KOG1036|consen 227 KDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIA 292 (323)
T ss_pred CCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEE
Confidence 011223479999999999999999999999999999955443333333446667777666555443
No 97
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.86 E-value=1.2e-20 Score=183.12 Aligned_cols=228 Identities=14% Similarity=0.249 Sum_probs=172.1
Q ss_pred ccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEECCCCc----------EEE----EeccCCCcceEEEEEeeCCCCCEEE
Q 005502 47 EGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRK----------LLH----SIETGHSANVFCTKFVPETSDELVV 111 (693)
Q Consensus 47 ~gH~~~V~~l~~s~-~g~~LaSgs~Dg~I~IWd~~~~~----------~~~----~l~~~h~~~I~sl~f~p~~~~~~l~ 111 (693)
+-|.|.||+|...+ .|+++++|+.||.|.|||++.-. .+. .-..+|.-.|.++.|-|.. ..+|.
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~D-tGmFt 118 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPID-TGMFT 118 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeec-Cceee
Confidence 46999999999998 68999999999999999997432 111 1135788999999999984 56999
Q ss_pred EEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCC--CcEEEEEeCCCcEEEEeCCCCCCCCCCCCC
Q 005502 112 SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN--PHVVWSASEDGTLRQHDFRQGSSCPPAGSS 189 (693)
Q Consensus 112 sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~--~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~ 189 (693)
+++.|.+++|||.++. +....|+ ..+.|++-+++|.. -.++++|..|-.|++.|+.++...
T Consensus 119 ssSFDhtlKVWDtnTl----------Q~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s------ 181 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTL----------QEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS------ 181 (397)
T ss_pred cccccceEEEeecccc----------eeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcce------
Confidence 9999999999999975 2334444 56788888888843 347778888889999999987522
Q ss_pred CcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC-CCcccccCC-CCCCccccc
Q 005502 190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRM-SPPPCVNYF 267 (693)
Q Consensus 190 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~-~~~~~~~~~-~~~~~~~~~ 267 (693)
+ ...+|...|.++.|+|.....|++|+.||.||+||+|... .+..+.... ..++.++ -
T Consensus 182 -----H--------------~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~-~ 241 (397)
T KOG4283|consen 182 -----H--------------TLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILK-T 241 (397)
T ss_pred -----e--------------eeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccc-c
Confidence 1 2236778899999999888889999999999999999652 122221111 1111111 1
Q ss_pred ccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEee
Q 005502 268 CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYT 319 (693)
Q Consensus 268 ~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~ 319 (693)
...|.+ .|+.++|+.+|.++++.+.|..+++|+..++......+.
T Consensus 242 ------n~ah~g-kvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g 286 (397)
T KOG4283|consen 242 ------NTAHYG-KVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFG 286 (397)
T ss_pred ------cccccc-eeeeeeecccchhhhhccCccceEEeecccCcccccccc
Confidence 122333 699999999999999999999999999999876555543
No 98
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.86 E-value=2.9e-20 Score=188.96 Aligned_cols=230 Identities=18% Similarity=0.273 Sum_probs=184.8
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCC
Q 005502 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 130 (693)
Q Consensus 51 ~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~ 130 (693)
..+.++...+....++||+.|..+.++|..+++.+..+ .||...|+++.|+|+ ...+++++.|..|+||.....+
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~-~Gh~kki~~v~~~~~--~~~v~~aSad~~i~vws~~~~s-- 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATL-KGHTKKITSVKFHKD--LDTVITASADEIIRVWSVPLSS-- 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhc-cCcceEEEEEEeccc--hhheeecCCcceEEeecccccc--
Confidence 57889999988789999999999999999999999888 899999999999999 4789999999999999998653
Q ss_pred CCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecC
Q 005502 131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD 210 (693)
Q Consensus 131 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~ 210 (693)
.......|..+|+.+..+| .+.+|++++.||+..+.|++++... .+. .
T Consensus 295 --------~~~~~~~h~~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~l-----------t~v------------s 342 (506)
T KOG0289|consen 295 --------EPTSSRPHEEPVTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQL-----------TVV------------S 342 (506)
T ss_pred --------Cccccccccccceeeeecc-CCcEEEEecCCceEEEEEccCCcEE-----------EEE------------e
Confidence 3456678999999999999 6788999999999999999987632 111 1
Q ss_pred CCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCC
Q 005502 211 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN 290 (693)
Q Consensus 211 ~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspd 290 (693)
.......+++.+|+|+ |.+|++|..||.|+|||+.....+..| .+|.+ +|..|+|+.|
T Consensus 343 ~~~s~v~~ts~~fHpD-gLifgtgt~d~~vkiwdlks~~~~a~F--------------------pght~-~vk~i~FsEN 400 (506)
T KOG0289|consen 343 DETSDVEYTSAAFHPD-GLIFGTGTPDGVVKIWDLKSQTNVAKF--------------------PGHTG-PVKAISFSEN 400 (506)
T ss_pred eccccceeEEeeEcCC-ceEEeccCCCceEEEEEcCCccccccC--------------------CCCCC-ceeEEEeccC
Confidence 1123457899999998 799999999999999999876544333 34555 7999999999
Q ss_pred CCEEEEEecCCcEEEEECCCCCcceEEee-cCCCceeEEeccCCCccccc
Q 005502 291 GEEVLLSYSGEHVYLMDVNHAGGRAMRYT-VGDASKIMSFTPTLNGLELQ 339 (693)
Q Consensus 291 g~~L~sgs~Dg~V~lwDl~~~~~~~~~~~-~~~~~~~~~~~p~~~g~~~~ 339 (693)
|-||++++.|+.|++||++..+..+.+.. .......+.|.++..-+...
T Consensus 401 GY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~ 450 (506)
T KOG0289|consen 401 GYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA 450 (506)
T ss_pred ceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee
Confidence 99999999999999999998653333222 22235566666655544433
No 99
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=8.4e-21 Score=201.34 Aligned_cols=249 Identities=18% Similarity=0.231 Sum_probs=193.1
Q ss_pred cCCCcEE---EEEECC-CCCEEEEEeCCCcEEEEECCCCc------EEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 005502 48 GHQGCVN---AISWNS-KGSLLISGSDDTHINVWSYSSRK------LLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (693)
Q Consensus 48 gH~~~V~---~l~~s~-~g~~LaSgs~Dg~I~IWd~~~~~------~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg 117 (693)
.|...|+ .+..+. .+++|.||+.||.|++|+..... .+..+ ..|.+.|.++..+.+ ++.|++++.|.
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asm-e~HsDWVNDiiL~~~--~~tlIS~SsDt 95 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASM-EHHSDWVNDIILCGN--GKTLISASSDT 95 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhh-hhhHhHHhhHHhhcC--CCceEEecCCc
Confidence 4666677 666665 56679999999999999986432 35566 689999999999887 68999999999
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEE
Q 005502 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (693)
Q Consensus 118 ~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l 197 (693)
+|++|+..... .-+..++..|.+.|+||+....+..+++|||-|+.|.+||+.++... ..+
T Consensus 96 TVK~W~~~~~~--------~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~---l~~-------- 156 (735)
T KOG0308|consen 96 TVKVWNAHKDN--------TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTAT---LVA-------- 156 (735)
T ss_pred eEEEeecccCc--------chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchh---hhh--------
Confidence 99999998642 13567788899999999994447789999999999999999987420 000
Q ss_pred EeccCCceeeecCCC-CCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCC
Q 005502 198 LDLRCGAKRSLADPP-KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (693)
Q Consensus 198 ~~~~~~~~~~l~~~~-~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (693)
+.......... ++...|++++.++. +..|+.|+..+.+++||.++.+.+..+ .|
T Consensus 157 ----s~n~~t~~sl~sG~k~siYSLA~N~t-~t~ivsGgtek~lr~wDprt~~kimkL--------------------rG 211 (735)
T KOG0308|consen 157 ----SFNNVTVNSLGSGPKDSIYSLAMNQT-GTIIVSGGTEKDLRLWDPRTCKKIMKL--------------------RG 211 (735)
T ss_pred ----hccccccccCCCCCccceeeeecCCc-ceEEEecCcccceEEeccccccceeee--------------------ec
Confidence 00001111111 55678999999997 689999999999999999987654333 45
Q ss_pred CCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCcccccCCccc
Q 005502 277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHD 344 (693)
Q Consensus 277 h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~ 344 (693)
|.. .|..+..++||+.++++++||+|++||+....+......+.+.+..+..+|....+.+....+.
T Consensus 212 HTd-NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~ 278 (735)
T KOG0308|consen 212 HTD-NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGN 278 (735)
T ss_pred ccc-ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCc
Confidence 666 5999999999999999999999999999998877777777777777777777666554444433
No 100
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.85 E-value=7.8e-20 Score=196.66 Aligned_cols=237 Identities=21% Similarity=0.331 Sum_probs=191.2
Q ss_pred EEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 005502 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 123 (693)
Q Consensus 44 ~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwd 123 (693)
.++.||...|.+++++.+...++||+. +.|+||+..++++++++.. +-+.+.+|.|. +.++++|...|.+.+||
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~---~y~l~~~Fvpg--d~~Iv~G~k~Gel~vfd 440 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITC---GYILASKFVPG--DRYIVLGTKNGELQVFD 440 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEecc---ccEEEEEecCC--CceEEEeccCCceEEEE
Confidence 467799999999999999998888876 5899999999999999943 37999999998 79999999999999999
Q ss_pred cCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCC
Q 005502 124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 203 (693)
Q Consensus 124 l~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (693)
+... ..+....+|.+.|.+|+..| ++.-++|||.|.+|++||+.-....+ .....++.+...
T Consensus 441 laS~----------~l~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~-------gt~~k~lsl~~~ 502 (888)
T KOG0306|consen 441 LASA----------SLVETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVP-------GTQKKVLSLKHT 502 (888)
T ss_pred eehh----------hhhhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccC-------cccceeeeeccc
Confidence 9864 44667789999999999999 66788899999999999986432110 001111211111
Q ss_pred ceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceE
Q 005502 204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 283 (693)
Q Consensus 204 ~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~ 283 (693)
... .-...|.|+++||+ +.+||++--|.+|++|-+.+.+-. +.-.||.- ||.
T Consensus 503 rtL------el~ddvL~v~~Spd-gk~LaVsLLdnTVkVyflDtlKFf--------------------lsLYGHkL-PV~ 554 (888)
T KOG0306|consen 503 RTL------ELEDDVLCVSVSPD-GKLLAVSLLDNTVKVYFLDTLKFF--------------------LSLYGHKL-PVL 554 (888)
T ss_pred eEE------eccccEEEEEEcCC-CcEEEEEeccCeEEEEEecceeee--------------------eeeccccc-cee
Confidence 111 11346899999997 799999999999999999876422 11134554 899
Q ss_pred EEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccC
Q 005502 284 HVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT 332 (693)
Q Consensus 284 ~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~ 332 (693)
++.+|||++.++||+.|..|++|-++-|.+-..++.|.+.+..+.|-|.
T Consensus 555 smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~ 603 (888)
T KOG0306|consen 555 SMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPK 603 (888)
T ss_pred EEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEccc
Confidence 9999999999999999999999999999999999999998888888774
No 101
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.7e-20 Score=186.43 Aligned_cols=256 Identities=18% Similarity=0.276 Sum_probs=192.8
Q ss_pred hhhhhcccccCCCCCcCcccccchhhhccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECC------CCcE
Q 005502 11 IYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS------SRKL 84 (693)
Q Consensus 11 ~~~~l~~r~~~~~~~~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~------~~~~ 84 (693)
+..+|.+|.+++.+-+.+.++- .+..+.-+.+.+.+|.+||++|.|+.++++||+|++|..++||++. +.++
T Consensus 19 i~~FL~QR~i~~~~~~~k~F~~--~~~~R~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KP 96 (609)
T KOG4227|consen 19 IESFLCQREIGSVKSVVKTFRP--DFQHRPFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKP 96 (609)
T ss_pred eeeeeeecccCCChhhhhhhch--hhhhcchhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCC
Confidence 5678999999998766665554 2344666778889999999999999999999999999999999986 3466
Q ss_pred EEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCC---CCeEEEEEecCCCc
Q 005502 85 LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHT---RRVKKLAVEVGNPH 161 (693)
Q Consensus 85 ~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~---~~V~~l~~sp~~~~ 161 (693)
+......|..+|+|++|.-. +.++++|..+++|..+|+.+. +.+..+. |. +.|+.+..+|. .+
T Consensus 97 I~~~~~~H~SNIF~L~F~~~--N~~~~SG~~~~~VI~HDiEt~----------qsi~V~~-~~~~~~~VY~m~~~P~-DN 162 (609)
T KOG4227|consen 97 IGVMEHPHRSNIFSLEFDLE--NRFLYSGERWGTVIKHDIETK----------QSIYVAN-ENNNRGDVYHMDQHPT-DN 162 (609)
T ss_pred ceeccCccccceEEEEEccC--CeeEecCCCcceeEeeecccc----------eeeeeec-ccCcccceeecccCCC-Cc
Confidence 77666678899999999887 589999999999999999964 3344443 44 48999999996 68
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEE
Q 005502 162 VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFAR 241 (693)
Q Consensus 162 ~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~ 241 (693)
+|++.+.+|.|.+||.|...... ..+ -+........++.|+|..+.+|++.+..+-+-
T Consensus 163 ~~~~~t~~~~V~~~D~Rd~~~~~----------~~~------------~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~ 220 (609)
T KOG4227|consen 163 TLIVVTRAKLVSFIDNRDRQNPI----------SLV------------LPANSGKNFYTAEFHPETPALILVNSETGGPN 220 (609)
T ss_pred eEEEEecCceEEEEeccCCCCCC----------cee------------eecCCCccceeeeecCCCceeEEeccccCCCC
Confidence 99999999999999999865220 000 11122345678899999999999999999999
Q ss_pred EEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEe
Q 005502 242 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRY 318 (693)
Q Consensus 242 lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~ 318 (693)
+||+|+.... .+++ .+.+... .......++.|+|+|..|++--....-.+||+.+..+..+.+
T Consensus 221 ~~D~R~~~~~-----------~~~~--~~~~~L~-~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~ 283 (609)
T KOG4227|consen 221 VFDRRMQARP-----------VYQR--SMFKGLP-QENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKS 283 (609)
T ss_pred ceeeccccch-----------HHhh--hccccCc-ccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEec
Confidence 9999975310 0110 0111110 111236789999999999988777778889999865444444
No 102
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.84 E-value=1.3e-20 Score=190.53 Aligned_cols=242 Identities=18% Similarity=0.197 Sum_probs=186.3
Q ss_pred CCCcCcchhhhhcccccCCC-----------------------------CCcCcccccchhhhccccceEEeccCCCcEE
Q 005502 4 FPFHDGSIYDMLDTRHTDTR-----------------------------PDVNHSLQMHSSLVRRLSQERELEGHQGCVN 54 (693)
Q Consensus 4 ~~~~~~~~~~~l~~r~~~~~-----------------------------~~~~~~l~~~~~~i~~l~~~~~l~gH~~~V~ 54 (693)
-+|++|+....+..|.+.+. +..++.+++|. +..+.+.++|.||++.|+
T Consensus 188 dtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wn--vd~~r~~~TLsGHtdkVt 265 (459)
T KOG0288|consen 188 DTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWN--VDSLRLRHTLSGHTDKVT 265 (459)
T ss_pred chhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeee--ccchhhhhhhccccccee
Confidence 67888888888888865421 22335566664 778888999999999999
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCC
Q 005502 55 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD 134 (693)
Q Consensus 55 ~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 134 (693)
++.|......+++|+.|.+|++||+....|..++. ....+.+|...+ ..+++|-.|++||+||++..
T Consensus 266 ~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l--~~S~cnDI~~~~----~~~~SgH~DkkvRfwD~Rs~------- 332 (459)
T KOG0288|consen 266 AAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL--PGSQCNDIVCSI----SDVISGHFDKKVRFWDIRSA------- 332 (459)
T ss_pred eehhhccccceeeccccchhhhhhhhhhheecccc--ccccccceEecc----eeeeecccccceEEEeccCC-------
Confidence 99999887779999999999999999988888774 334566676653 47999999999999999965
Q ss_pred CCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCC
Q 005502 135 NAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ 214 (693)
Q Consensus 135 ~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 214 (693)
.+......+. .|+++..++ ++..+.+++.|.++.++|+|+...+..... .. ..-
T Consensus 333 ---~~~~sv~~gg-~vtSl~ls~-~g~~lLsssRDdtl~viDlRt~eI~~~~sA--------------~g-------~k~ 386 (459)
T KOG0288|consen 333 ---DKTRSVPLGG-RVTSLDLSM-DGLELLSSSRDDTLKVIDLRTKEIRQTFSA--------------EG-------FKC 386 (459)
T ss_pred ---ceeeEeecCc-ceeeEeecc-CCeEEeeecCCCceeeeecccccEEEEeec--------------cc-------ccc
Confidence 4455555544 999999999 666677889999999999998763311100 00 011
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEE
Q 005502 215 TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEV 294 (693)
Q Consensus 215 ~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L 294 (693)
....+.+.|||+ +.|+++|+.||.|+||++.+++....... .+.+..|++++|+|.|.+|
T Consensus 387 asDwtrvvfSpd-~~YvaAGS~dgsv~iW~v~tgKlE~~l~~-------------------s~s~~aI~s~~W~~sG~~L 446 (459)
T KOG0288|consen 387 ASDWTRVVFSPD-GSYVAAGSADGSVYIWSVFTGKLEKVLSL-------------------STSNAAITSLSWNPSGSGL 446 (459)
T ss_pred ccccceeEECCC-CceeeeccCCCcEEEEEccCceEEEEecc-------------------CCCCcceEEEEEcCCCchh
Confidence 223788999997 78999999999999999998764432211 1122259999999999999
Q ss_pred EEEecCCcEEEE
Q 005502 295 LLSYSGEHVYLM 306 (693)
Q Consensus 295 ~sgs~Dg~V~lw 306 (693)
++++.++.+.+|
T Consensus 447 lsadk~~~v~lW 458 (459)
T KOG0288|consen 447 LSADKQKAVTLW 458 (459)
T ss_pred hcccCCcceEec
Confidence 999999999999
No 103
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.84 E-value=4.2e-20 Score=197.53 Aligned_cols=202 Identities=26% Similarity=0.408 Sum_probs=168.1
Q ss_pred hccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCC
Q 005502 37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD 116 (693)
Q Consensus 37 i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~D 116 (693)
.....+..+|+||...|.|++...++. |+|||+|.+++||-.. ++...+ .+|...|+++++.|. +.++||+.|
T Consensus 88 ~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~~~l-~gH~asVWAv~~l~e---~~~vTgsaD 160 (745)
T KOG0301|consen 88 LSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELVYSL-QGHTASVWAVASLPE---NTYVTGSAD 160 (745)
T ss_pred cCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch--hhhccc-CCcchheeeeeecCC---CcEEeccCc
Confidence 456678899999999999999988888 9999999999999964 455556 799999999999998 499999999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceE
Q 005502 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (693)
Q Consensus 117 g~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~ 196 (693)
.+|++|.-. +.++++.+|++.|+.+++-| + ..|+|++.||.|++|++.. .
T Consensus 161 KtIklWk~~------------~~l~tf~gHtD~VRgL~vl~-~-~~flScsNDg~Ir~w~~~g-e--------------- 210 (745)
T KOG0301|consen 161 KTIKLWKGG------------TLLKTFSGHTDCVRGLAVLD-D-SHFLSCSNDGSIRLWDLDG-E--------------- 210 (745)
T ss_pred ceeeeccCC------------chhhhhccchhheeeeEEec-C-CCeEeecCCceEEEEeccC-c---------------
Confidence 999999886 55889999999999999998 3 3577999999999999943 2
Q ss_pred EEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCC
Q 005502 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (693)
Q Consensus 197 l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (693)
.+..+.+|...+++++..+. ...+++++.|++++||+.. .|++.+.
T Consensus 211 ----------~l~~~~ghtn~vYsis~~~~-~~~Ivs~gEDrtlriW~~~---------------e~~q~I~-------- 256 (745)
T KOG0301|consen 211 ----------VLLEMHGHTNFVYSISMALS-DGLIVSTGEDRTLRIWKKD---------------ECVQVIT-------- 256 (745)
T ss_pred ----------eeeeeeccceEEEEEEecCC-CCeEEEecCCceEEEeecC---------------ceEEEEe--------
Confidence 23344477888999996665 5699999999999999976 2344331
Q ss_pred CCccceEEEEEcCCCCEEEEEecCCcEEEEECCC
Q 005502 277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 277 h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~ 310 (693)
++...|+++++-++|. |++|++||.||+|....
T Consensus 257 lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 257 LPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred cCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 2333589999999998 68899999999998874
No 104
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=8.5e-19 Score=171.59 Aligned_cols=258 Identities=16% Similarity=0.236 Sum_probs=178.6
Q ss_pred ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC----cEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 005502 47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (693)
Q Consensus 47 ~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~----~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vw 122 (693)
.+|.+-|+|+.|.+.|+.+|||+.|++|+|||.... .+.... ..|.+.|..|.|.+..-|+.+|+++.|++|.||
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~W-rah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSW-RAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeE-EecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 579999999999999999999999999999996432 344445 689999999999876669999999999999999
Q ss_pred EcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecC-CCcEEEEEeCCCcEEEEeCCCCCCC-------------CCCCC
Q 005502 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-NPHVVWSASEDGTLRQHDFRQGSSC-------------PPAGS 188 (693)
Q Consensus 123 dl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~~l~Sgs~Dg~V~iwDlr~~~~~-------------~~~~~ 188 (693)
.-...+.+. ....+....++......|++|.|.|. -+-.|++++.||+||||+.-..-.. .+...
T Consensus 89 EE~~~~~~~-~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~ 167 (361)
T KOG2445|consen 89 EEQEKSEEA-HGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK 167 (361)
T ss_pred eeccccccc-ccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence 764322111 11123445666777889999999983 3557899999999999987543211 00001
Q ss_pred CCccc---------------------------ceEEEeccCC--ceeeecCCCCCccceEEEEEcCCCC---cEEEEEeC
Q 005502 189 SHQEC---------------------------RNILLDLRCG--AKRSLADPPKQTLSLKSCDISSTRP---HLLLVGGS 236 (693)
Q Consensus 189 ~~~~~---------------------------~~~l~~~~~~--~~~~l~~~~~~~~~v~sl~~sp~~~---~~Latgs~ 236 (693)
.+..| ...||....+ +...+...++++.+|+.|+|.|.-| ++||+++.
T Consensus 168 ~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~k 247 (361)
T KOG2445|consen 168 NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATK 247 (361)
T ss_pred ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeec
Confidence 11111 1233333332 2345566778999999999999654 58999999
Q ss_pred CCcEEEEecCCCC-CCcccccCCCCCCcccccccCcccc-CCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCC
Q 005502 237 DAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSE-HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 237 Dg~I~lwD~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~ 310 (693)
|| |+||.+.... ++.. .....+..+..+.-..+.. .+|.. .|+.+.|+-.|..|.+.+.||.|++|..+-
T Consensus 248 Dg-v~I~~v~~~~s~i~~--ee~~~~~~~~~l~v~~vs~~~~H~~-~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 248 DG-VRIFKVKVARSAIEE--EEVLAPDLMTDLPVEKVSELDDHNG-EVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred Cc-EEEEEEeeccchhhh--hcccCCCCccccceEEeeeccCCCC-ceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 99 9999998432 1110 0001111111111111121 33544 799999999999999999999999997654
No 105
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.84 E-value=8.3e-20 Score=204.86 Aligned_cols=239 Identities=15% Similarity=0.205 Sum_probs=190.2
Q ss_pred CCCcEEEEEECCCCCEEEEEe--CCCcEEEEECCC------------CcEEEEeccCCCcceEEEEEeeCCCCCEEEEEe
Q 005502 49 HQGCVNAISWNSKGSLLISGS--DDTHINVWSYSS------------RKLLHSIETGHSANVFCTKFVPETSDELVVSGA 114 (693)
Q Consensus 49 H~~~V~~l~~s~~g~~LaSgs--~Dg~I~IWd~~~------------~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs 114 (693)
|...|.++..+|+|..+|||+ .|+.++||+... .+.+.++ ..|.+.|.|+.|+|+ |.+||+|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m-~~h~~sv~CVR~S~d--G~~lAsGS 88 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTM-DDHDGSVNCVRFSPD--GSYLASGS 88 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheee-ccccCceeEEEECCC--CCeEeecc
Confidence 456799999999999999999 999999998652 2344455 689999999999999 79999999
Q ss_pred CCCcEEEEEcCC-CC-------CCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCC
Q 005502 115 GDAEVRLFNLSR-FS-------GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA 186 (693)
Q Consensus 115 ~Dg~V~vwdl~~-~~-------~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~ 186 (693)
.|+.|.||.-.. +. +.......++.+..+.+|...|..++|+| +..+|++++.|++|.+|+.++.+.
T Consensus 89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~---- 163 (942)
T KOG0973|consen 89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFEL---- 163 (942)
T ss_pred CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEcccccee----
Confidence 999999999873 11 11223445677888999999999999999 779999999999999999988642
Q ss_pred CCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccc
Q 005502 187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266 (693)
Q Consensus 187 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~ 266 (693)
+....+|...|..+.|.|. |++||+-+.|++|++|.+.+....+.+..+.. .+
T Consensus 164 ---------------------~~vl~~H~s~VKGvs~DP~-Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~--~~--- 216 (942)
T KOG0973|consen 164 ---------------------LKVLRGHQSLVKGVSWDPI-GKYFASQSDDRTLKVWRTSDWGIEKSITKPFE--ES--- 216 (942)
T ss_pred ---------------------eeeeecccccccceEECCc-cCeeeeecCCceEEEEEcccceeeEeeccchh--hC---
Confidence 2233467888999999998 79999999999999999776443332211110 00
Q ss_pred cccCccccCCCCccceEEEEEcCCCCEEEEEec----CCcEEEEECCCCCcceEEeecCCCceeEEeccC
Q 005502 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS----GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT 332 (693)
Q Consensus 267 ~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~----Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~ 332 (693)
.....+..+.|||||.+|++... -.++.|.+-.+.+....+.+|..+.+++.|+|.
T Consensus 217 ----------~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~ 276 (942)
T KOG0973|consen 217 ----------PLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPK 276 (942)
T ss_pred ----------CCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChH
Confidence 01114788999999999998765 347889999888777888888899999999996
No 106
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=7.8e-20 Score=186.75 Aligned_cols=210 Identities=21% Similarity=0.306 Sum_probs=167.5
Q ss_pred ccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcC
Q 005502 47 EGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (693)
Q Consensus 47 ~gH~~~V~~l~~s~~-g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~ 125 (693)
.||++.|.+|+|+.. .+.|||||.|.+|++||+.++++..++ ..|.+.|.+++|+|.. ..+|++|+.|++|.+.|.+
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~-~~~~k~Vq~l~wh~~~-p~~LLsGs~D~~V~l~D~R 317 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSI-THHGKKVQTLEWHPYE-PSVLLSGSYDGTVALKDCR 317 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceeh-hhcCCceeEEEecCCC-ceEEEeccccceEEeeecc
Confidence 489999999999985 569999999999999999999999999 6899999999999997 7899999999999999999
Q ss_pred CCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCce
Q 005502 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (693)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (693)
..+ ..-..++ -.+.|-.++|.|..++.|+++..||+|+-+|+|....+
T Consensus 318 ~~~---------~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~---------------------- 365 (463)
T KOG0270|consen 318 DPS---------NSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKP---------------------- 365 (463)
T ss_pred Ccc---------ccCceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCc----------------------
Confidence 532 1122333 35789999999999999999999999999999987522
Q ss_pred eeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEE
Q 005502 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV 285 (693)
Q Consensus 206 ~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v 285 (693)
++....|..+|.++++++..+.+++|++.|+.|++|++....+-... .+.-.-....|.
T Consensus 366 --vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~-------------------~~~~~~~rl~c~ 424 (463)
T KOG0270|consen 366 --VWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVK-------------------EHSFKLGRLHCF 424 (463)
T ss_pred --eeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccc-------------------cccccccceeec
Confidence 23334677899999999999999999999999999998754321110 000001124566
Q ss_pred EEcCCCCE-EEEEecCCcEEEEECCCC
Q 005502 286 TFSPNGEE-VLLSYSGEHVYLMDVNHA 311 (693)
Q Consensus 286 ~fspdg~~-L~sgs~Dg~V~lwDl~~~ 311 (693)
++.|+-.+ |+.|+..+.+++||+.+.
T Consensus 425 ~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 425 ALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred ccCCCcceEEEecCccceEEEeecccC
Confidence 77777654 556666778999999884
No 107
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.83 E-value=1.4e-19 Score=194.66 Aligned_cols=210 Identities=19% Similarity=0.332 Sum_probs=172.0
Q ss_pred cceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC-------CcEEEEec----cCCCcceEEEEEeeCCCCCE
Q 005502 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS-------RKLLHSIE----TGHSANVFCTKFVPETSDEL 109 (693)
Q Consensus 41 ~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~-------~~~~~~l~----~~h~~~I~sl~f~p~~~~~~ 109 (693)
.+..+.+.|.+.|++|+.+||+..++|||.|.+|++||..- .+.+..+. ..-...|.|++++|+ +.+
T Consensus 445 ~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spd--gk~ 522 (888)
T KOG0306|consen 445 SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPD--GKL 522 (888)
T ss_pred hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCC--CcE
Confidence 34556679999999999999999999999999999999741 11111111 123578999999999 799
Q ss_pred EEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCC
Q 005502 110 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS 189 (693)
Q Consensus 110 l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~ 189 (693)
|+.+-.|.+|+||-+.+. +....+-+|.-+|.+|.++| ++++++|||.|..|++|-+.-+.
T Consensus 523 LaVsLLdnTVkVyflDtl----------KFflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFGD-------- 583 (888)
T KOG0306|consen 523 LAVSLLDNTVKVYFLDTL----------KFFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFGD-------- 583 (888)
T ss_pred EEEEeccCeEEEEEecce----------eeeeeecccccceeEEeccC-CcCeEEeccCCCceEEeccccch--------
Confidence 999999999999999865 55667889999999999999 77999999999999999887654
Q ss_pred CcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCccccccc
Q 005502 190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP 269 (693)
Q Consensus 190 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~ 269 (693)
|... ...|...|.++.|-|. .+++.+++.|+.|+-||-.....+ +.+
T Consensus 584 ---CHKS--------------~fAHdDSvm~V~F~P~-~~~FFt~gKD~kvKqWDg~kFe~i-------------q~L-- 630 (888)
T KOG0306|consen 584 ---CHKS--------------FFAHDDSVMSVQFLPK-THLFFTCGKDGKVKQWDGEKFEEI-------------QKL-- 630 (888)
T ss_pred ---hhhh--------------hhcccCceeEEEEccc-ceeEEEecCcceEEeechhhhhhh-------------eee--
Confidence 2111 2257788999999995 789999999999999998765433 322
Q ss_pred CccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCC
Q 005502 270 MHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 270 ~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~ 310 (693)
.+|.. .|++++.+|+|.++++++.|..|++|....
T Consensus 631 -----~~H~~-ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 631 -----DGHHS-EVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred -----ccchh-eeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 34544 599999999999999999999999999776
No 108
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1.5e-19 Score=171.60 Aligned_cols=246 Identities=15% Similarity=0.173 Sum_probs=184.2
Q ss_pred eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC---cEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 005502 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR---KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (693)
Q Consensus 46 l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~---~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vw 122 (693)
-.+|.+.|..+...-.|++|||++.|++|+|+..... +++.++ .+|.++|+.++|..-.-|.+|++++.||.|.||
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L-~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAEL-TGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEe-cCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 3579999999999999999999999999999998754 456677 899999999999753338999999999999999
Q ss_pred EcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCC-CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEecc
Q 005502 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR 201 (693)
Q Consensus 123 dl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~ 201 (693)
.-..+. +.....+..|...|++|+|.|.+ +-+|++++.||.|.+.+.+....-
T Consensus 86 ke~~g~--------w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w------------------ 139 (299)
T KOG1332|consen 86 KEENGR--------WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGW------------------ 139 (299)
T ss_pred ecCCCc--------hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCc------------------
Confidence 988542 25567778899999999999954 457889999999999998875100
Q ss_pred CCceeeecCCCCCccceEEEEEcCCC-------------CcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccc
Q 005502 202 CGAKRSLADPPKQTLSLKSCDISSTR-------------PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFC 268 (693)
Q Consensus 202 ~~~~~~l~~~~~~~~~v~sl~~sp~~-------------~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~ 268 (693)
..-.....|...|++++|.|.. .+.|++|+.|..|+||+..+..=.. -.++
T Consensus 140 ----~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~-----------e~~l- 203 (299)
T KOG1332|consen 140 ----TTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKL-----------ERTL- 203 (299)
T ss_pred ----cchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhh-----------hhhh-
Confidence 0011122466778888888741 2569999999999999988642100 0011
Q ss_pred cCccccCCCCccceEEEEEcCCC----CEEEEEecCCcEEEEECCCCCc---ceEEeecCCCceeEEeccCCCcccccCC
Q 005502 269 PMHLSEHGRSSLHLTHVTFSPNG----EEVLLSYSGEHVYLMDVNHAGG---RAMRYTVGDASKIMSFTPTLNGLELQPP 341 (693)
Q Consensus 269 ~~~~~~~~h~~~~V~~v~fspdg----~~L~sgs~Dg~V~lwDl~~~~~---~~~~~~~~~~~~~~~~~p~~~g~~~~~~ 341 (693)
.+|.+ .|..++|.|.- .+|++++.||+|.||-...... ..++..-.++.-.+.|+++.+-++....
T Consensus 204 ------~~H~d-wVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~G 276 (299)
T KOG1332|consen 204 ------EGHKD-WVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGG 276 (299)
T ss_pred ------hhcch-hhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecC
Confidence 45666 79999999964 5799999999999998874211 1122222345666778887777655443
No 109
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.83 E-value=2.7e-19 Score=198.39 Aligned_cols=223 Identities=23% Similarity=0.329 Sum_probs=179.5
Q ss_pred CcCcccccchhhhccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeC
Q 005502 25 DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 104 (693)
Q Consensus 25 ~~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~ 104 (693)
..+.++++|+ ..+..+.++|.||.+.|.|+... +.++++||.|.+|+||++.++.++..+ .+|.++|.+|...
T Consensus 268 S~D~t~rvWd--~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~-~~h~~~V~~v~~~-- 340 (537)
T KOG0274|consen 268 STDKTERVWD--CSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLL-RGHTGPVNCVQLD-- 340 (537)
T ss_pred ecCCcEEeEe--cCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEe-ccccccEEEEEec--
Confidence 3468899998 89999999999999999999875 457889999999999999999999998 6799999999997
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCC
Q 005502 105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP 184 (693)
Q Consensus 105 ~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~ 184 (693)
+.++++|+.|++|+|||+... +++.++.+|..+|+++.+.+ . ..+++|+.|++|++||+++...|
T Consensus 341 --~~~lvsgs~d~~v~VW~~~~~----------~cl~sl~gH~~~V~sl~~~~-~-~~~~Sgs~D~~IkvWdl~~~~~c- 405 (537)
T KOG0274|consen 341 --EPLLVSGSYDGTVKVWDPRTG----------KCLKSLSGHTGRVYSLIVDS-E-NRLLSGSLDTTIKVWDLRTKRKC- 405 (537)
T ss_pred --CCEEEEEecCceEEEEEhhhc----------eeeeeecCCcceEEEEEecC-c-ceEEeeeeccceEeecCCchhhh-
Confidence 369999999999999999965 77999999999999998865 2 78889999999999999987322
Q ss_pred CCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcc
Q 005502 185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV 264 (693)
Q Consensus 185 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~ 264 (693)
+.....|...+.++.+. +++|++++.|+.|++||...+..+..+
T Consensus 406 -----------------------~~tl~~h~~~v~~l~~~---~~~Lvs~~aD~~Ik~WD~~~~~~~~~~---------- 449 (537)
T KOG0274|consen 406 -----------------------IHTLQGHTSLVSSLLLR---DNFLVSSSADGTIKLWDAEEGECLRTL---------- 449 (537)
T ss_pred -----------------------hhhhcCCcccccccccc---cceeEeccccccEEEeecccCceeeee----------
Confidence 22223344445445443 469999999999999999887544332
Q ss_pred cccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEE
Q 005502 265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMR 317 (693)
Q Consensus 265 ~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~ 317 (693)
.++....|+.+.+. ...+++++.|+.+++||+.++......
T Consensus 450 ----------~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 450 ----------EGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred ----------ccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 11111247777776 567899999999999999997644433
No 110
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.83 E-value=7.3e-20 Score=182.37 Aligned_cols=225 Identities=18% Similarity=0.240 Sum_probs=174.8
Q ss_pred CCcCcccccchhhhccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC----------------------
Q 005502 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS---------------------- 81 (693)
Q Consensus 24 ~~~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~---------------------- 81 (693)
...+..+++|.. ....+..+|+.|.|.|+.|++.. ..++|+++|.+|+.|.+..
T Consensus 85 Gs~DG~VkiWnl--sqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~ 160 (433)
T KOG0268|consen 85 GSCDGEVKIWNL--SQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNS 160 (433)
T ss_pred cccCceEEEEeh--hhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeeccccccccccccccc
Confidence 456788888873 44557889999999999999987 6788999999998887321
Q ss_pred ----------------CcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeecc
Q 005502 82 ----------------RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC 145 (693)
Q Consensus 82 ----------------~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~ 145 (693)
..++..+ .--...|.+++|+|.. ..+|++|+.|+.|.+||++.. .|++...
T Consensus 161 ~FaTcGe~i~IWD~~R~~Pv~sm-swG~Dti~svkfNpvE-TsILas~~sDrsIvLyD~R~~----------~Pl~KVi- 227 (433)
T KOG0268|consen 161 VFATCGEQIDIWDEQRDNPVSSM-SWGADSISSVKFNPVE-TSILASCASDRSIVLYDLRQA----------SPLKKVI- 227 (433)
T ss_pred cccccCceeeecccccCCcccee-ecCCCceeEEecCCCc-chheeeeccCCceEEEecccC----------Cccceee-
Confidence 1123333 2234578899999975 578999999999999999976 3344333
Q ss_pred CCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcC
Q 005502 146 HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS 225 (693)
Q Consensus 146 h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp 225 (693)
-..+-+.|+|+| ....|++|++|-.++.||+|..+.+ +..+.+|...|.+++|||
T Consensus 228 ~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p------------------------~~v~~dhvsAV~dVdfsp 282 (433)
T KOG0268|consen 228 LTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRP------------------------LNVHKDHVSAVMDVDFSP 282 (433)
T ss_pred eeccccceecCc-cccceeeccccccceehhhhhhccc------------------------chhhcccceeEEEeccCC
Confidence 345667899999 8899999999999999999986532 334457788999999999
Q ss_pred CCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEE
Q 005502 226 TRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYL 305 (693)
Q Consensus 226 ~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~l 305 (693)
. |+-+++|+.|.+||||..+.+..-..+ +...-..|.+|.||.|.+|+++|+.|+.|+|
T Consensus 283 t-G~EfvsgsyDksIRIf~~~~~~SRdiY--------------------htkRMq~V~~Vk~S~Dskyi~SGSdd~nvRl 341 (433)
T KOG0268|consen 283 T-GQEFVSGSYDKSIRIFPVNHGHSRDIY--------------------HTKRMQHVFCVKYSMDSKYIISGSDDGNVRL 341 (433)
T ss_pred C-cchhccccccceEEEeecCCCcchhhh--------------------hHhhhheeeEEEEeccccEEEecCCCcceee
Confidence 8 789999999999999999865422111 1111225999999999999999999999999
Q ss_pred EECCCC
Q 005502 306 MDVNHA 311 (693)
Q Consensus 306 wDl~~~ 311 (693)
|..+..
T Consensus 342 Wka~As 347 (433)
T KOG0268|consen 342 WKAKAS 347 (433)
T ss_pred eecchh
Confidence 987764
No 111
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=1.9e-19 Score=194.61 Aligned_cols=231 Identities=15% Similarity=0.211 Sum_probs=178.2
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCc----EEEEecc--CCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 005502 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK----LLHSIET--GHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 123 (693)
Q Consensus 50 ~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~----~~~~l~~--~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwd 123 (693)
....++|..+++-..++.++.. .++||.+.... +...+.. .-...+..|+|... ..++|+|++..|.|.+||
T Consensus 39 k~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~-~~NlIAT~s~nG~i~vWd 116 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQL-YSNLIATCSTNGVISVWD 116 (839)
T ss_pred ccccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccc-hhhhheeecCCCcEEEEe
Confidence 3467788888988888888764 78888776432 2222211 11234567899844 478999999999999999
Q ss_pred cCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCC
Q 005502 124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 203 (693)
Q Consensus 124 l~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (693)
+..... .+.+..|..|+..|+++.|++..+++|+|||.||+|++||+|......
T Consensus 117 lnk~~r-------nk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~------------------- 170 (839)
T KOG0269|consen 117 LNKSIR-------NKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKS------------------- 170 (839)
T ss_pred cCcccc-------chhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccc-------------------
Confidence 996321 145678899999999999999999999999999999999999876331
Q ss_pred ceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceE
Q 005502 204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 283 (693)
Q Consensus 204 ~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~ 283 (693)
........|..+.|+|..++.|+++...|++.+||+|... .|...+ ..|.+ +|.
T Consensus 171 ------t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~------------r~~~k~-------~AH~G-pV~ 224 (839)
T KOG0269|consen 171 ------TFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD------------RCEKKL-------TAHNG-PVL 224 (839)
T ss_pred ------cccccchhhhceeeccCCCceEEEecCCceEEEeeccCch------------hHHHHh-------hcccC-ceE
Confidence 1112346789999999989999999999999999999643 444444 34665 799
Q ss_pred EEEEcCCCCEEEEEecCCcEEEEECCCCC-cceEEeecCCCceeEEeccCCC
Q 005502 284 HVTFSPNGEEVLLSYSGEHVYLMDVNHAG-GRAMRYTVGDASKIMSFTPTLN 334 (693)
Q Consensus 284 ~v~fspdg~~L~sgs~Dg~V~lwDl~~~~-~~~~~~~~~~~~~~~~~~p~~~ 334 (693)
++.|+|++.+|++|+.|++|+|||+.++. .+........+...+.|.|...
T Consensus 225 c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~ 276 (839)
T KOG0269|consen 225 CLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARS 276 (839)
T ss_pred EEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCcc
Confidence 99999999999999999999999999654 3444556667788888988754
No 112
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.82 E-value=1.7e-19 Score=180.61 Aligned_cols=228 Identities=18% Similarity=0.267 Sum_probs=169.1
Q ss_pred ccccceEEeccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEECCCCcEEE---EeccCCCcceEEEEEeeCCCCCEEEEE
Q 005502 38 RRLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLH---SIETGHSANVFCTKFVPETSDELVVSG 113 (693)
Q Consensus 38 ~~l~~~~~l~gH~~~V~~l~~s~~-g~~LaSgs~Dg~I~IWd~~~~~~~~---~l~~~h~~~I~sl~f~p~~~~~~l~sg 113 (693)
....++.++.+|.+.=..|+|||- -..|+||.--+.|++|.+.++.... .+ .+|+..|-.++|+|.. ..+|++|
T Consensus 199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf-~gH~~SVEDLqWSptE-~~vfaSc 276 (440)
T KOG0302|consen 199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPF-TGHTKSVEDLQWSPTE-DGVFASC 276 (440)
T ss_pred cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccc-cccccchhhhccCCcc-CceEEee
Confidence 556789999999999999999993 2358888888899999998875432 23 5899999999999986 6899999
Q ss_pred eCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCccc
Q 005502 114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 193 (693)
Q Consensus 114 s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~ 193 (693)
+.||+|+|||++.... ++....++|...|+.|.|+-..+ +|++|+.||+++|||+|+-+.-
T Consensus 277 S~DgsIrIWDiRs~~~--------~~~~~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~---------- 337 (440)
T KOG0302|consen 277 SCDGSIRIWDIRSGPK--------KAAVSTKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSG---------- 337 (440)
T ss_pred ecCceEEEEEecCCCc--------cceeEeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCC----------
Confidence 9999999999997532 33444588999999999998555 9999999999999999986521
Q ss_pred ceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccc
Q 005502 194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 273 (693)
Q Consensus 194 ~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (693)
.++..+.-|..+|+++.|+|.....|++++.|..|.|||+..-........... .-++...|.-+.
T Consensus 338 ------------~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~--~~L~dlPpQLLF 403 (440)
T KOG0302|consen 338 ------------QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAA--EGLQDLPPQLLF 403 (440)
T ss_pred ------------CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccc--cchhcCCceeEE
Confidence 234444567889999999999888999999999999999975432111111000 112222222222
Q ss_pred cC-CCCccceEEEEEcCCCC-EEEEEecCCc
Q 005502 274 EH-GRSSLHLTHVTFSPNGE-EVLLSYSGEH 302 (693)
Q Consensus 274 ~~-~h~~~~V~~v~fspdg~-~L~sgs~Dg~ 302 (693)
.+ |.. .|..|.|++.-. +|++.+.||.
T Consensus 404 VHqGQk--e~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 404 VHQGQK--EVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred Eecchh--HhhhheeccCCCCeEEEecccce
Confidence 22 222 478899998765 5555556663
No 113
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=1.3e-20 Score=201.96 Aligned_cols=203 Identities=24% Similarity=0.408 Sum_probs=173.8
Q ss_pred hccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCC
Q 005502 37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD 116 (693)
Q Consensus 37 i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~D 116 (693)
+...-.+..|.+|..+|-||.|+++..+|+.|+.+|+|++||++..+.++++ .+|..++.+|.|+|. +.++++|+.|
T Consensus 57 i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtL-tgh~~~~~sv~f~P~--~~~~a~gStd 133 (825)
T KOG0267|consen 57 IGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTL-TGHLLNITSVDFHPY--GEFFASGSTD 133 (825)
T ss_pred ccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhh-hccccCcceeeeccc--eEEecccccc
Confidence 4555566679999999999999999999999999999999999999999999 899999999999999 6899999999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceE
Q 005502 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (693)
Q Consensus 117 g~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~ 196 (693)
+.+++||++.. .+.+.+.+|...|..+.|+| ++.+++++++|.++++||++.++.
T Consensus 134 td~~iwD~Rk~----------Gc~~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~agk~-------------- 188 (825)
T KOG0267|consen 134 TDLKIWDIRKK----------GCSHTYKSHTRVVDVLRLSP-DGRWVASGGEDNTVKIWDLTAGKL-------------- 188 (825)
T ss_pred ccceehhhhcc----------CceeeecCCcceeEEEeecC-CCceeeccCCcceeeeeccccccc--------------
Confidence 99999999953 56889999999999999999 779999999999999999988762
Q ss_pred EEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCC
Q 005502 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (693)
Q Consensus 197 l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (693)
+..+..|...+.++.|+|. ..+++.|+.|++|++||+++...+.+.. .
T Consensus 189 -----------~~ef~~~e~~v~sle~hp~-e~Lla~Gs~d~tv~f~dletfe~I~s~~--------------------~ 236 (825)
T KOG0267|consen 189 -----------SKEFKSHEGKVQSLEFHPL-EVLLAPGSSDRTVRFWDLETFEVISSGK--------------------P 236 (825)
T ss_pred -----------ccccccccccccccccCch-hhhhccCCCCceeeeeccceeEEeeccC--------------------C
Confidence 2334456778889999997 5799999999999999999754432221 0
Q ss_pred CCccceEEEEEcCCCCEEEEEecC
Q 005502 277 RSSLHLTHVTFSPNGEEVLLSYSG 300 (693)
Q Consensus 277 h~~~~V~~v~fspdg~~L~sgs~D 300 (693)
. ...|.+++|+|+|..+++|...
T Consensus 237 ~-~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 237 E-TDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred c-cCCceeeeecCCceeeecCchh
Confidence 1 1258999999999988888664
No 114
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.81 E-value=1.2e-18 Score=178.48 Aligned_cols=260 Identities=16% Similarity=0.189 Sum_probs=183.3
Q ss_pred ccccceEEeccCCCcEEEEEECCCC--CEEEEEeCCCcEEEEECCCCc----EEEEeccCCCcceEEEEEeeCCCCCEEE
Q 005502 38 RRLSQERELEGHQGCVNAISWNSKG--SLLISGSDDTHINVWSYSSRK----LLHSIETGHSANVFCTKFVPETSDELVV 111 (693)
Q Consensus 38 ~~l~~~~~l~gH~~~V~~l~~s~~g--~~LaSgs~Dg~I~IWd~~~~~----~~~~l~~~h~~~I~sl~f~p~~~~~~l~ 111 (693)
..+....+.+-|.+.|++++|+|.. +++|+|..-|+|-+||+.+.. -+..+ .+|.++|.++.|+|.+ ...|+
T Consensus 174 ~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f-~~hs~~Vs~l~F~P~n-~s~i~ 251 (498)
T KOG4328|consen 174 DDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLF-TPHSGPVSGLKFSPAN-TSQIY 251 (498)
T ss_pred ccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEe-ccCCccccceEecCCC-hhhee
Confidence 3444556677899999999999954 689999999999999995322 23334 7899999999999986 67899
Q ss_pred EEeCCCcEEEEEcCCCCCCCC----------------------------------C-CCCCCCceeeccCCCCeEEEEEe
Q 005502 112 SGAGDAEVRLFNLSRFSGRGL----------------------------------D-DNAITPSALYQCHTRRVKKLAVE 156 (693)
Q Consensus 112 sgs~Dg~V~vwdl~~~~~~~~----------------------------------~-~~~~~~~~~~~~h~~~V~~l~~s 156 (693)
+.+.||+|++-|++....... + .........+.-|...|..|+++
T Consensus 252 ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~N 331 (498)
T KOG4328|consen 252 SSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALN 331 (498)
T ss_pred eeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecC
Confidence 999999999999885321110 0 00001122334578899999999
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeC
Q 005502 157 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS 236 (693)
Q Consensus 157 p~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~ 236 (693)
|..+.+|+|+|.|++++|||+|.-..... ++...-.|...|.+..|||.++. |+|.+.
T Consensus 332 P~~p~~laT~s~D~T~kIWD~R~l~~K~s---------------------p~lst~~HrrsV~sAyFSPs~gt-l~TT~~ 389 (498)
T KOG4328|consen 332 PVCPWFLATASLDQTAKIWDLRQLRGKAS---------------------PFLSTLPHRRSVNSAYFSPSGGT-LLTTCQ 389 (498)
T ss_pred CCCchheeecccCcceeeeehhhhcCCCC---------------------cceecccccceeeeeEEcCCCCc-eEeecc
Confidence 99999999999999999999997542210 01122256778999999999776 999999
Q ss_pred CCcEEEEecC----CCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCC
Q 005502 237 DAFARLYDRR----MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 237 Dg~I~lwD~r----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~ 312 (693)
|..|||||.. ...+...+.+..... .+- ......|.|+..++++|-.-..|-+||-..++
T Consensus 390 D~~IRv~dss~~sa~~~p~~~I~Hn~~t~--------------Rwl--T~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 390 DNEIRVFDSSCISAKDEPLGTIPHNNRTG--------------RWL--TPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred CCceEEeecccccccCCccceeeccCccc--------------ccc--cchhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence 9999999984 333333332211110 111 24567899999999999988889999988854
Q ss_pred cceEEeec--CCCceeEEeccCCCccc
Q 005502 313 GRAMRYTV--GDASKIMSFTPTLNGLE 337 (693)
Q Consensus 313 ~~~~~~~~--~~~~~~~~~~p~~~g~~ 337 (693)
....++.+ ...+.+..|+|...++.
T Consensus 454 ~v~el~~P~~~tI~~vn~~HP~~~~~~ 480 (498)
T KOG4328|consen 454 MVCELHDPESSTIPSVNEFHPMRDTLA 480 (498)
T ss_pred EeeeccCccccccccceeeccccccee
Confidence 22222221 12344567888776543
No 115
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.81 E-value=7e-19 Score=180.52 Aligned_cols=225 Identities=18% Similarity=0.311 Sum_probs=175.5
Q ss_pred CcCcccccchhhhccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeC
Q 005502 25 DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 104 (693)
Q Consensus 25 ~~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~ 104 (693)
..++.+++|+ .++++.++.+.+|.+.|.+++|-.....|.+++.|+.|+||+++....+.++ .+|.+.|.+|....-
T Consensus 221 g~d~~v~Iw~--~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetl-yGHqd~v~~IdaL~r 297 (479)
T KOG0299|consen 221 GRDRHVQIWD--CDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETL-YGHQDGVLGIDALSR 297 (479)
T ss_pred CCCceEEEec--CcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHH-hCCccceeeechhcc
Confidence 4557788876 6788999999999999999999988889999999999999999988888888 799999999998876
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCC
Q 005502 105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP 184 (693)
Q Consensus 105 ~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~ 184 (693)
++.+-+|+.|+++++|++.. +...++.+|.+.+-|++|-. ...|+||+.||.|.+|++-..++.-
T Consensus 298 --eR~vtVGgrDrT~rlwKi~e-----------esqlifrg~~~sidcv~~In--~~HfvsGSdnG~IaLWs~~KKkplf 362 (479)
T KOG0299|consen 298 --ERCVTVGGRDRTVRLWKIPE-----------ESQLIFRGGEGSIDCVAFIN--DEHFVSGSDNGSIALWSLLKKKPLF 362 (479)
T ss_pred --cceEEeccccceeEEEeccc-----------cceeeeeCCCCCeeeEEEec--ccceeeccCCceEEEeeecccCcee
Confidence 46676777999999999964 34567888999999999984 4678899999999999998876441
Q ss_pred CCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcc
Q 005502 185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV 264 (693)
Q Consensus 185 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~ 264 (693)
.....|.. ......-.+..+|++++..|. ..++++|+.+|.||+|-+..+-. .+
T Consensus 363 ~~~~AHgv-------------~~~~~~~~~~~Witsla~i~~-sdL~asGS~~G~vrLW~i~~g~r------------~i 416 (479)
T KOG0299|consen 363 TSRLAHGV-------------IPELDPVNGNFWITSLAVIPG-SDLLASGSWSGCVRLWKIEDGLR------------AI 416 (479)
T ss_pred Eeeccccc-------------cCCccccccccceeeeEeccc-CceEEecCCCCceEEEEecCCcc------------cc
Confidence 11111110 011112233468999999995 78999999999999999876521 12
Q ss_pred cccccCccccCCCCccceEEEEEcCCCCEEEEEec
Q 005502 265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS 299 (693)
Q Consensus 265 ~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~ 299 (693)
+.+....+.+ .|++|+|+++|+.|++|.+
T Consensus 417 ~~l~~ls~~G------fVNsl~f~~sgk~ivagiG 445 (479)
T KOG0299|consen 417 NLLYSLSLVG------FVNSLAFSNSGKRIVAGIG 445 (479)
T ss_pred ceeeeccccc------EEEEEEEccCCCEEEEecc
Confidence 2222222222 6999999999998888876
No 116
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.81 E-value=4.7e-19 Score=189.11 Aligned_cols=258 Identities=14% Similarity=0.166 Sum_probs=206.9
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEee-CCCCCEEEEEeCCCcEEEEEcCC
Q 005502 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP-ETSDELVVSGAGDAEVRLFNLSR 126 (693)
Q Consensus 48 gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p-~~~~~~l~sgs~Dg~V~vwdl~~ 126 (693)
+-.-.|.+|+.+|+|++||+|..-|+++||++..-..+..+ ..|...|.|+.|+. .....+|++++.|.-|+|||+..
T Consensus 457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~-eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r 535 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFM-EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR 535 (1080)
T ss_pred CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhhe-ecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc
Confidence 34567999999999999999999999999999988888888 79999999999984 33246899999999999999986
Q ss_pred CCCCCCCCCCCCCceeeccCCCCeEEEEEecCCC-cEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCce
Q 005502 127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP-HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (693)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (693)
. +.++.++.+|+..|+++.|.-.+. ..+++++.|..|.+--.+.... ..++--
T Consensus 536 n---------y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~------------g~~f~r----- 589 (1080)
T KOG1408|consen 536 N---------YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASS------------GRLFPR----- 589 (1080)
T ss_pred c---------cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccC------------ceeccc-----
Confidence 4 367889999999999999987443 4678999999886433322110 011100
Q ss_pred eeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEE
Q 005502 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV 285 (693)
Q Consensus 206 ~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v 285 (693)
.........++.+++.|. .+++++++.|..|+|||+.++++.+.|... ++|.+ ....|
T Consensus 590 ---~t~t~~ktTlYDm~Vdp~-~k~v~t~cQDrnirif~i~sgKq~k~FKgs-----------------~~~eG-~lIKv 647 (1080)
T KOG1408|consen 590 ---HTQTLSKTTLYDMAVDPT-SKLVVTVCQDRNIRIFDIESGKQVKSFKGS-----------------RDHEG-DLIKV 647 (1080)
T ss_pred ---cccccccceEEEeeeCCC-cceEEEEecccceEEEeccccceeeeeccc-----------------ccCCC-ceEEE
Confidence 001122456889999997 789999999999999999999876655321 33444 46789
Q ss_pred EEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCcccccCCccccccccccccc
Q 005502 286 TFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRG 354 (693)
Q Consensus 286 ~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~ 354 (693)
...|.|-||++++.|.++.++|+.++++....+.|.+.++.+.|.++-+.+-....+++.+++..+..+
T Consensus 648 ~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~m 716 (1080)
T KOG1408|consen 648 ILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLTM 716 (1080)
T ss_pred EECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECchhH
Confidence 999999999999999999999999999999999999999999999998887777788888877665543
No 117
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=3e-20 Score=199.23 Aligned_cols=232 Identities=16% Similarity=0.258 Sum_probs=187.5
Q ss_pred eEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 005502 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (693)
Q Consensus 43 ~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vw 122 (693)
.+++..|...|.|+..-..++.+++|+.|-.+-+|.......+..+ .+|..+|-||.|++. ..+|++|+.+|+|++|
T Consensus 21 ~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~-~~hespIeSl~f~~~--E~LlaagsasgtiK~w 97 (825)
T KOG0267|consen 21 TREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSL-TGHESPIESLTFDTS--ERLLAAGSASGTIKVW 97 (825)
T ss_pred chhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhee-eccCCcceeeecCcc--hhhhcccccCCceeee
Confidence 3456789999999999778899999999999999999887777777 799999999999998 5899999999999999
Q ss_pred EcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccC
Q 005502 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (693)
Q Consensus 123 dl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~ 202 (693)
|+... +.+.++.||...+.++.|+| -+.++++|+.|+.+.+||+|...+
T Consensus 98 DleeA----------k~vrtLtgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc-------------------- 146 (825)
T KOG0267|consen 98 DLEEA----------KIVRTLTGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRKKGC-------------------- 146 (825)
T ss_pred ehhhh----------hhhhhhhccccCcceeeecc-ceEEeccccccccceehhhhccCc--------------------
Confidence 99965 55789999999999999999 667889999999999999985431
Q ss_pred CceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccce
Q 005502 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL 282 (693)
Q Consensus 203 ~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V 282 (693)
.....+|...+.++.|+|+ |.+++.|+.|..|+|||++.++....| .+|.. .|
T Consensus 147 -----~~~~~s~~~vv~~l~lsP~-Gr~v~~g~ed~tvki~d~~agk~~~ef--------------------~~~e~-~v 199 (825)
T KOG0267|consen 147 -----SHTYKSHTRVVDVLRLSPD-GRWVASGGEDNTVKIWDLTAGKLSKEF--------------------KSHEG-KV 199 (825)
T ss_pred -----eeeecCCcceeEEEeecCC-CceeeccCCcceeeeeccccccccccc--------------------ccccc-cc
Confidence 1122245667899999997 799999999999999999887654433 23443 58
Q ss_pred EEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCc
Q 005502 283 THVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNG 335 (693)
Q Consensus 283 ~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~g 335 (693)
.++.|+|..-.++.|+.|++|++||+.+-+.....-.....+....|+|+..-
T Consensus 200 ~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~ 252 (825)
T KOG0267|consen 200 QSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKI 252 (825)
T ss_pred cccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCcee
Confidence 88999999999999999999999999962211111111234566677776443
No 118
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.8e-18 Score=169.53 Aligned_cols=260 Identities=12% Similarity=0.151 Sum_probs=165.0
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCC
Q 005502 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL 132 (693)
Q Consensus 53 V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~ 132 (693)
-+|+.|++.|.+||+|..||.|.|||+.|...-+.+ .+|..+|+|++|+++ |++|+|++.|..|.+||+..++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~l-saH~~pi~sl~WS~d--gr~LltsS~D~si~lwDl~~gs---- 98 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARML-SAHVRPITSLCWSRD--GRKLLTSSRDWSIKLWDLLKGS---- 98 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhh-hccccceeEEEecCC--CCEeeeecCCceeEEEeccCCC----
Confidence 789999999999999999999999999998766666 899999999999999 7999999999999999999753
Q ss_pred CCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCC--CCCC-----------CCCCCcccceEEEe
Q 005502 133 DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS--SCPP-----------AGSSHQECRNILLD 199 (693)
Q Consensus 133 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~--~~~~-----------~~~~~~~~~~~l~~ 199 (693)
+++.+. ..++|....|+|.+.+.+++.-.+..-.+-++..+. ..+. ....+..+..++..
T Consensus 99 ------~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitG 171 (405)
T KOG1273|consen 99 ------PLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITG 171 (405)
T ss_pred ------ceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEe
Confidence 333333 345666666666554444444333322222222111 0000 00000111111111
Q ss_pred ccCCce--------eeecCCCCC-ccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccC
Q 005502 200 LRCGAK--------RSLADPPKQ-TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM 270 (693)
Q Consensus 200 ~~~~~~--------~~l~~~~~~-~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~ 270 (693)
...|.. ..+...... ...|+.+.++-. +..|++-+.|..||.|+++..-....-. .+ ...+.++..
T Consensus 172 tsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~-g~~liiNtsDRvIR~ye~~di~~~~r~~---e~-e~~~K~qDv 246 (405)
T KOG1273|consen 172 TSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRK-GRFLIINTSDRVIRTYEISDIDDEGRDG---EV-EPEHKLQDV 246 (405)
T ss_pred cCcceEEEEecchheeeeeeeechheeeeEEEEecc-CcEEEEecCCceEEEEehhhhcccCccC---Cc-ChhHHHHHH
Confidence 111111 111111111 246788888875 7899999999999999998543211100 00 001111000
Q ss_pred ccccCCCCccceEEEEEcCCCCEEEEEec-CCcEEEEECCCCCcceEEeecC-CCceeEEeccCCCccc
Q 005502 271 HLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGRAMRYTVG-DASKIMSFTPTLNGLE 337 (693)
Q Consensus 271 ~~~~~~h~~~~V~~v~fspdg~~L~sgs~-Dg~V~lwDl~~~~~~~~~~~~~-~~~~~~~~~p~~~g~~ 337 (693)
-......+++||.+|.|+++++. -..+|||.-..|....++.+.. .....+.|+|...-+.
T Consensus 247 ------VNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~ 309 (405)
T KOG1273|consen 247 ------VNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIA 309 (405)
T ss_pred ------HhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeee
Confidence 01124678999999999998886 5789999999988777777655 5556677888765543
No 119
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.81 E-value=1.6e-18 Score=185.58 Aligned_cols=222 Identities=17% Similarity=0.212 Sum_probs=184.4
Q ss_pred CcccccchhhhccccceEEeccCCCcEEE-EEECC-CCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeC
Q 005502 27 NHSLQMHSSLVRRLSQERELEGHQGCVNA-ISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 104 (693)
Q Consensus 27 ~~~l~~~~~~i~~l~~~~~l~gH~~~V~~-l~~s~-~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~ 104 (693)
+.++++|..--+.+...+.+++|.+.|.+ +++-+ ++-.|++|+.|++|.+|.+.+..++..+ .+|..+|.|+....+
T Consensus 34 d~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~L-kgH~snVC~ls~~~~ 112 (745)
T KOG0301|consen 34 DGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTL-KGHKSNVCSLSIGED 112 (745)
T ss_pred CCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhh-hccccceeeeecCCc
Confidence 56688888777777778889999999998 99986 4557999999999999999999999999 799999999997766
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCC
Q 005502 105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP 184 (693)
Q Consensus 105 ~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~ 184 (693)
+ .++||+.|.++++|.+. +....+.+|...|.+++.-|.+ .++||+.|.+|++|.-.+.
T Consensus 113 --~-~~iSgSWD~TakvW~~~------------~l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~~~~---- 171 (745)
T KOG0301|consen 113 --G-TLISGSWDSTAKVWRIG------------ELVYSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKGGTL---- 171 (745)
T ss_pred --C-ceEecccccceEEecch------------hhhcccCCcchheeeeeecCCC--cEEeccCcceeeeccCCch----
Confidence 3 49999999999999987 4466789999999999999844 7889999999999986332
Q ss_pred CCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcc
Q 005502 185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV 264 (693)
Q Consensus 185 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~ 264 (693)
+....+|...|..+++-|+ ..|+++++||.|++|++. + .|+
T Consensus 172 -----------------------l~tf~gHtD~VRgL~vl~~--~~flScsNDg~Ir~w~~~-g-------------e~l 212 (745)
T KOG0301|consen 172 -----------------------LKTFSGHTDCVRGLAVLDD--SHFLSCSNDGSIRLWDLD-G-------------EVL 212 (745)
T ss_pred -----------------------hhhhccchhheeeeEEecC--CCeEeecCCceEEEEecc-C-------------cee
Confidence 2334467888999999986 479999999999999994 3 334
Q ss_pred cccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEee
Q 005502 265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYT 319 (693)
Q Consensus 265 ~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~ 319 (693)
..+ ++|.+ .|.+++..+++..+++++.|+++++|+.. ++.+.+..
T Consensus 213 ~~~-------~ghtn-~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~l 257 (745)
T KOG0301|consen 213 LEM-------HGHTN-FVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITL 257 (745)
T ss_pred eee-------eccce-EEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEec
Confidence 333 56777 59999988999999999999999999988 33444443
No 120
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=2.6e-17 Score=154.41 Aligned_cols=245 Identities=18% Similarity=0.294 Sum_probs=175.7
Q ss_pred cccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC--------------cEEEEeccCCCcceEEEEEeeC
Q 005502 39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR--------------KLLHSIETGHSANVFCTKFVPE 104 (693)
Q Consensus 39 ~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~--------------~~~~~l~~~h~~~I~sl~f~p~ 104 (693)
.+..+.+|+ .+..|.+++|+|.|.+.|+|+...+.+|-.+..- ..+..-...|.+.|.|++|+|.
T Consensus 22 ~f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ 100 (350)
T KOG0641|consen 22 HFEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC 100 (350)
T ss_pred ceEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc
Confidence 345555665 4678999999999999999999999998754321 1222222468999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEec---CCCcEEEEEeC-CCcEEEEeCCCC
Q 005502 105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV---GNPHVVWSASE-DGTLRQHDFRQG 180 (693)
Q Consensus 105 ~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp---~~~~~l~Sgs~-Dg~V~iwDlr~~ 180 (693)
|++|+||+.|.+|++..++...... .-+...+.-|.+.|..++|.. .++.+|++++. |-.|++-|...+
T Consensus 101 --geliatgsndk~ik~l~fn~dt~~~-----~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g 173 (350)
T KOG0641|consen 101 --GELIATGSNDKTIKVLPFNADTCNA-----TGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRG 173 (350)
T ss_pred --cCeEEecCCCceEEEEecccccccc-----cCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCC
Confidence 7999999999999998887543221 234556778999999999964 24457777654 555666666555
Q ss_pred CCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEE-EEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCC
Q 005502 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC-DISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS 259 (693)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl-~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~ 259 (693)
+.. ....+|+..|.++ .|+ +.++++|+.|.+||+||+|-..
T Consensus 174 ~~~-------------------------~a~sghtghilalyswn---~~m~~sgsqdktirfwdlrv~~---------- 215 (350)
T KOG0641|consen 174 QGF-------------------------HALSGHTGHILALYSWN---GAMFASGSQDKTIRFWDLRVNS---------- 215 (350)
T ss_pred Ccc-------------------------eeecCCcccEEEEEEec---CcEEEccCCCceEEEEeeeccc----------
Confidence 422 2222444445443 343 5799999999999999999653
Q ss_pred CCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCC
Q 005502 260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL 333 (693)
Q Consensus 260 ~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~ 333 (693)
|+++.-.. ....+-....|..|+..|.|+.|++|-.|....+||++.+...+.++.+...++.+.|+|..
T Consensus 216 ---~v~~l~~~-~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a 285 (350)
T KOG0641|consen 216 ---CVNTLDND-FHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGA 285 (350)
T ss_pred ---eeeeccCc-ccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCc
Confidence 33322111 11122334579999999999999999999999999999977666677777778888888863
No 121
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.80 E-value=2.6e-19 Score=170.27 Aligned_cols=258 Identities=15% Similarity=0.173 Sum_probs=200.0
Q ss_pred EEeccCCCcEEEEEECC---CCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 005502 44 RELEGHQGCVNAISWNS---KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (693)
Q Consensus 44 ~~l~gH~~~V~~l~~s~---~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~ 120 (693)
.+..||+.+|-.|+|+| +|-+|++++.|+.=.+-+-+++..+.++ .+|.+.|++.....+ -..-++++.|-+-+
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtf-eghkgavw~~~l~~n--a~~aasaaadftak 84 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTF-EGHKGAVWSATLNKN--ATRAASAAADFTAK 84 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEee-eccCcceeeeecCch--hhhhhhhcccchhh
Confidence 35679999999999997 7999999999999999999999999999 799999999999877 46788999999999
Q ss_pred EEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEec
Q 005502 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (693)
Q Consensus 121 vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~ 200 (693)
|||.-++ ..+..+. |..-|+.++|+. +.+.|+||+.+..+|+||+...+.++.
T Consensus 85 vw~a~tg----------delhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~--------------- 137 (334)
T KOG0278|consen 85 VWDAVTG----------DELHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPK--------------- 137 (334)
T ss_pred hhhhhhh----------hhhhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCch---------------
Confidence 9999865 3466665 999999999998 667888999999999999988764422
Q ss_pred cCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccc------------
Q 005502 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFC------------ 268 (693)
Q Consensus 201 ~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~------------ 268 (693)
...+|...|..+-|... .+.|++++.|++||+||.|++..+.++..+... ..+....
T Consensus 138 ---------E~~ghtg~Ir~v~wc~e-D~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~V-tSlEvs~dG~ilTia~gss 206 (334)
T KOG0278|consen 138 ---------EISGHTGGIRTVLWCHE-DKCILSSADDKTVRLWDHRTGTEVQSLEFNSPV-TSLEVSQDGRILTIAYGSS 206 (334)
T ss_pred ---------hhcCCCCcceeEEEecc-CceEEeeccCCceEEEEeccCcEEEEEecCCCC-cceeeccCCCEEEEecCce
Confidence 23356778888889876 478888899999999999999877666543221 1111111
Q ss_pred -----cCcccc--CCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEE-eecCCCceeEEeccCCCcccccC
Q 005502 269 -----PMHLSE--HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMR-YTVGDASKIMSFTPTLNGLELQP 340 (693)
Q Consensus 269 -----~~~~~~--~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~-~~~~~~~~~~~~~p~~~g~~~~~ 340 (693)
+.++.. ...-...|.+...+|+-..+++|+.|..+|.||..+++..-.. -.+..++..+.|+|+...-+...
T Consensus 207 V~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGS 286 (334)
T KOG0278|consen 207 VKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGS 286 (334)
T ss_pred eEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccC
Confidence 001100 0111235888999999999999999999999999998765553 45667788889999865544333
Q ss_pred Cc
Q 005502 341 PI 342 (693)
Q Consensus 341 ~~ 342 (693)
..
T Consensus 287 ED 288 (334)
T KOG0278|consen 287 ED 288 (334)
T ss_pred CC
Confidence 33
No 122
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.80 E-value=3.7e-18 Score=163.69 Aligned_cols=224 Identities=15% Similarity=0.260 Sum_probs=179.2
Q ss_pred CCcCcccccchhhhccccceEEeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEe
Q 005502 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102 (693)
Q Consensus 24 ~~~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~-~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~ 102 (693)
..+++.+.+|.....++...-.++||++.|-.++|+| +..+|++++.|.+|++||..++++...+. ...++ .-+.|+
T Consensus 38 gs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~-~~~en-i~i~ws 115 (313)
T KOG1407|consen 38 GSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIE-TKGEN-INITWS 115 (313)
T ss_pred cccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEee-ccCcc-eEEEEc
Confidence 5677888888877777777778899999999999998 56799999999999999999999999883 33344 457899
Q ss_pred eCCCCCEEEEEeCCCcEEEEEcCCCCCCC-------------------------------CCCCCCCCceeeccCCCCeE
Q 005502 103 PETSDELVVSGAGDAEVRLFNLSRFSGRG-------------------------------LDDNAITPSALYQCHTRRVK 151 (693)
Q Consensus 103 p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~-------------------------------~~~~~~~~~~~~~~h~~~V~ 151 (693)
|+ |.+++.+..|..|...|.++..... +.-...+++..+++|.....
T Consensus 116 p~--g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCi 193 (313)
T KOG1407|consen 116 PD--GEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCI 193 (313)
T ss_pred CC--CCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceE
Confidence 98 7999999999999999987532110 11234578889999999999
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEE
Q 005502 152 KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLL 231 (693)
Q Consensus 152 ~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~L 231 (693)
||.|.| .+.+||+|+.|..|.+||+...- |... .+...-+|..++||-+ +++|
T Consensus 194 cI~f~p-~GryfA~GsADAlvSLWD~~ELi-----------C~R~--------------isRldwpVRTlSFS~d-g~~l 246 (313)
T KOG1407|consen 194 CIEFDP-DGRYFATGSADALVSLWDVDELI-----------CERC--------------ISRLDWPVRTLSFSHD-GRML 246 (313)
T ss_pred EEEECC-CCceEeeccccceeeccChhHhh-----------hhee--------------eccccCceEEEEeccC-ccee
Confidence 999999 77999999999999999987632 1111 2234568999999997 7999
Q ss_pred EEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecC
Q 005502 232 LVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG 300 (693)
Q Consensus 232 atgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~D 300 (693)
|+|+.|-.|-|=++.++..+..++ ...+...|+|+|....|+-++.|
T Consensus 247 ASaSEDh~IDIA~vetGd~~~eI~----------------------~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 247 ASASEDHFIDIAEVETGDRVWEIP----------------------CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred eccCccceEEeEecccCCeEEEee----------------------ccCCceeEEecCCCceeeEEecC
Confidence 999999999999998887554331 12257889999999999877764
No 123
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.80 E-value=3.3e-18 Score=181.45 Aligned_cols=256 Identities=18% Similarity=0.292 Sum_probs=173.3
Q ss_pred EEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEE-eccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 005502 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHS-IETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (693)
Q Consensus 44 ~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~-l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vw 122 (693)
+....|-+.|..+.|-|...+|++++.|.+|++||+.+.+++.. +..+|.+.|.+++|.|.. ...|++|+.||.|.||
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n-~~vF~tGgRDg~illW 172 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTN-PAVFCTGGRDGEILLW 172 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCC-CcceeeccCCCcEEEE
Confidence 44567999999999999777999999999999999999888765 237999999999999996 6899999999999999
Q ss_pred EcCCCCCCCC-----------CC------CCCCCceeeccCCCC----eEEEEEecCCCcEEEEEeC-CCcEEEEeCCCC
Q 005502 123 NLSRFSGRGL-----------DD------NAITPSALYQCHTRR----VKKLAVEVGNPHVVWSASE-DGTLRQHDFRQG 180 (693)
Q Consensus 123 dl~~~~~~~~-----------~~------~~~~~~~~~~~h~~~----V~~l~~sp~~~~~l~Sgs~-Dg~V~iwDlr~~ 180 (693)
|++....... .. ...+-+.....|... |+.+.| . +...|+|+|. |+.|++||+|..
T Consensus 173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f-k-De~tlaSaga~D~~iKVWDLRk~ 250 (720)
T KOG0321|consen 173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF-K-DESTLASAGAADSTIKVWDLRKN 250 (720)
T ss_pred EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEE-e-ccceeeeccCCCcceEEEeeccc
Confidence 9985331100 00 001112233344444 444555 4 6678888888 999999999987
Q ss_pred CCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCC
Q 005502 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP 260 (693)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~ 260 (693)
...-..... ....+.........+.++..... |.+|.+.|.|+.|++|+++....- |
T Consensus 251 ~~~~r~ep~--------------~~~~~~t~skrs~G~~nL~lDss-Gt~L~AsCtD~sIy~ynm~s~s~s--------P 307 (720)
T KOG0321|consen 251 YTAYRQEPR--------------GSDKYPTHSKRSVGQVNLILDSS-GTYLFASCTDNSIYFYNMRSLSIS--------P 307 (720)
T ss_pred ccccccCCC--------------cccCccCcccceeeeEEEEecCC-CCeEEEEecCCcEEEEeccccCcC--------c
Confidence 643111110 00011111223456788888887 566767777999999999975421 1
Q ss_pred CCcccccccCccccCCCCccc-eEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEee-cCCCceeEEeccCCCc
Q 005502 261 PPCVNYFCPMHLSEHGRSSLH-LTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYT-VGDASKIMSFTPTLNG 335 (693)
Q Consensus 261 ~~~~~~~~~~~~~~~~h~~~~-V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~-~~~~~~~~~~~p~~~g 335 (693)
..+ | .++.... -..-..+|++.+|++|+.|+.+|+|.+.+.+.+...+. +...+..++|.|....
T Consensus 308 ~~~---~-------sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t 374 (720)
T KOG0321|consen 308 VAE---F-------SGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATT 374 (720)
T ss_pred hhh---c-------cCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCC
Confidence 111 1 1111111 12335689999999999999999999999776655443 3334555667765433
No 124
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.80 E-value=8.3e-19 Score=171.42 Aligned_cols=243 Identities=18% Similarity=0.286 Sum_probs=182.4
Q ss_pred cceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEE---EEeccCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 005502 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL---HSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (693)
Q Consensus 41 ~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~---~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg 117 (693)
-++++|..|.+.|++|.|+|...+|++|+.|++|+++|+...... +.+ ....+|.++.|+|. |.+|+.|..-.
T Consensus 163 PvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~--qd~~~vrsiSfHPs--GefllvgTdHp 238 (430)
T KOG0640|consen 163 PVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVF--QDTEPVRSISFHPS--GEFLLVGTDHP 238 (430)
T ss_pred ceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHh--hccceeeeEeecCC--CceEEEecCCC
Confidence 468889999999999999999999999999999999999754322 233 24568999999999 79999999999
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEE
Q 005502 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (693)
Q Consensus 118 ~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l 197 (693)
++++||+++.+. + -+...-..|+..|+++.+++ .+++.+|++.||.|++||--+.+.+..+...
T Consensus 239 ~~rlYdv~T~Qc--f-----vsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~A-------- 302 (430)
T KOG0640|consen 239 TLRLYDVNTYQC--F-----VSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNA-------- 302 (430)
T ss_pred ceeEEeccceeE--e-----eecCcccccccceeEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhh--------
Confidence 999999996421 1 01112346999999999999 7789999999999999997665432111111
Q ss_pred EeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCC
Q 005502 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 277 (693)
Q Consensus 198 ~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 277 (693)
-....|.+..|..+ ++++++.+.|..|++|.+.++..+.. +......+ .
T Consensus 303 ---------------H~gsevcSa~Ftkn-~kyiLsSG~DS~vkLWEi~t~R~l~~-------------YtGAg~tg--r 351 (430)
T KOG0640|consen 303 ---------------HGGSEVCSAVFTKN-GKYILSSGKDSTVKLWEISTGRMLKE-------------YTGAGTTG--R 351 (430)
T ss_pred ---------------cCCceeeeEEEccC-CeEEeecCCcceeeeeeecCCceEEE-------------EecCCccc--c
Confidence 12357888899986 79999999999999999998754433 32221111 1
Q ss_pred CccceEEEEEcCCCCEEEEEec-CCcEEEEECCCCCcc-eEEeecCCCceeEEeccCCCc
Q 005502 278 SSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGR-AMRYTVGDASKIMSFTPTLNG 335 (693)
Q Consensus 278 ~~~~V~~v~fspdg~~L~sgs~-Dg~V~lwDl~~~~~~-~~~~~~~~~~~~~~~~p~~~g 335 (693)
.. .-+...|+....|++.-.. .+.+.-||.+++... .....+..+++.+..+|....
T Consensus 352 q~-~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~ 410 (430)
T KOG0640|consen 352 QK-HRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPA 410 (430)
T ss_pred hh-hhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCc
Confidence 11 2356778888888887765 678999999997654 345567778888889987543
No 125
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.80 E-value=1.3e-17 Score=162.22 Aligned_cols=179 Identities=20% Similarity=0.291 Sum_probs=148.8
Q ss_pred ccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCC-CCEEEEEeCCCcEEEEEc
Q 005502 47 EGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS-DELVVSGAGDAEVRLFNL 124 (693)
Q Consensus 47 ~gH~~~V~~l~~s~-~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~-~~~l~sgs~Dg~V~vwdl 124 (693)
.+|.-.|.++.|-| |.-.+.|+|-|.+++|||..+.+....+ ...+.|.+-+|+|-.. ..++|+|..|-.|++-|+
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F--~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi 175 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDF--KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDI 175 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEe--ecCceeehhhcChhhhcceEEEEecCCCcEEEEec
Confidence 47888999999999 5668889999999999999998888777 4678899999998642 347888888999999999
Q ss_pred CCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCc
Q 005502 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (693)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (693)
..+ ...+++.+|...|.++.|+|....+|+||+.||.|++||+|....| -..+|...+.
T Consensus 176 ~SG----------s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgc-----------f~~lD~hn~k 234 (397)
T KOG4283|consen 176 ASG----------SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGC-----------FRVLDQHNTK 234 (397)
T ss_pred cCC----------cceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccce-----------eEEeecccCc
Confidence 965 5688999999999999999988899999999999999999986543 2233333322
Q ss_pred -eeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC
Q 005502 205 -KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (693)
Q Consensus 205 -~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~ 249 (693)
.+.+...+.|...+..++|..+ +.++++++.|..+++|+..++.
T Consensus 235 ~~p~~~~n~ah~gkvngla~tSd-~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 235 RPPILKTNTAHYGKVNGLAWTSD-ARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred cCccccccccccceeeeeeeccc-chhhhhccCccceEEeecccCc
Confidence 2334446678889999999997 7899999999999999998775
No 126
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.80 E-value=6.6e-18 Score=165.08 Aligned_cols=218 Identities=18% Similarity=0.278 Sum_probs=148.9
Q ss_pred EEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 005502 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 123 (693)
Q Consensus 44 ~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwd 123 (693)
+....|.++|.+++|+.+|+.+++|+.|+.+++||+.+++... + ..|.++|.++.|.+...-..|+||+.|.+|+.||
T Consensus 66 ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~-v-~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD 143 (347)
T KOG0647|consen 66 KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQ-V-AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWD 143 (347)
T ss_pred hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeee-e-eecccceeEEEEecCCCcceeEecccccceeecc
Confidence 4456799999999999999999999999999999999995554 4 5799999999999875345899999999999999
Q ss_pred cCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCC-----------------
Q 005502 124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA----------------- 186 (693)
Q Consensus 124 l~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~----------------- 186 (693)
.+.. .++.++. -..+|+++..-. .+++.+..+..|.+|+++.+......
T Consensus 144 ~R~~----------~pv~t~~-LPeRvYa~Dv~~---pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d 209 (347)
T KOG0647|consen 144 TRSS----------NPVATLQ-LPERVYAADVLY---PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQD 209 (347)
T ss_pred cCCC----------Ceeeeee-ccceeeehhccC---ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEec
Confidence 9964 4455544 355666666532 35666667777777777654321000
Q ss_pred ----CCCCcccceEEEeccCCceee-----ecC----CCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcc
Q 005502 187 ----GSSHQECRNILLDLRCGAKRS-----LAD----PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS 253 (693)
Q Consensus 187 ----~~~~~~~~~~l~~~~~~~~~~-----l~~----~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~ 253 (693)
..+..+++..+..+..+.... ... .......|++|+|+|. ...|+|++.||++.+||-.....+.+
T Consensus 210 ~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~-hgtlvTaGsDGtf~FWDkdar~kLk~ 288 (347)
T KOG0647|consen 210 KDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPV-HGTLVTAGSDGTFSFWDKDARTKLKT 288 (347)
T ss_pred CCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecc-cceEEEecCCceEEEecchhhhhhhc
Confidence 001111112222222110000 000 1112457889999997 56899999999999999876544432
Q ss_pred cccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEec
Q 005502 254 CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS 299 (693)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~ 299 (693)
. ..|.. +|++++|+.+|.+++-+.+
T Consensus 289 s--------------------~~~~q-pItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 289 S--------------------ETHPQ-PITCCSFNRNGSIFAYALG 313 (347)
T ss_pred c--------------------CcCCC-ccceeEecCCCCEEEEEee
Confidence 2 11222 7999999999998875543
No 127
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=2.2e-17 Score=162.20 Aligned_cols=223 Identities=18% Similarity=0.250 Sum_probs=158.2
Q ss_pred eEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC-----cEEE-EeccCCCcceEEEEEeeCCCCCEEEEEeCC
Q 005502 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR-----KLLH-SIETGHSANVFCTKFVPETSDELVVSGAGD 116 (693)
Q Consensus 43 ~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~-----~~~~-~l~~~h~~~I~sl~f~p~~~~~~l~sgs~D 116 (693)
...|+||.+.|++++|+.+|++|||++.|+.|+||++... ++++ .+..+| .+.|.|.|+. ..+++++...
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dh---pT~V~FapDc-~s~vv~~~~g 154 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDH---PTRVVFAPDC-KSVVVSVKRG 154 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCC---ceEEEECCCc-ceEEEEEccC
Confidence 4568999999999999999999999999999999998753 2232 232344 5789999996 5677788788
Q ss_pred CcEEEEEcCCCCC-CC-CCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccc
Q 005502 117 AEVRLFNLSRFSG-RG-LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (693)
Q Consensus 117 g~V~vwdl~~~~~-~~-~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~ 194 (693)
.++++|-+..... .. .....+.....-..|.-.|..+-... +..+|+|++.|..|.+||++ ++...
T Consensus 155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L~---------- 222 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLLQ---------- 222 (420)
T ss_pred CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-Cceee----------
Confidence 8999998864321 11 00111111222334667777777765 77899999999999999998 44221
Q ss_pred eEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCcccc
Q 005502 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 274 (693)
Q Consensus 195 ~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (693)
.........+..++||+ |+++++++--..|++|.+--.+. .+++ ...+.| ..
T Consensus 223 ---------------~idtnq~~n~~aavSP~-GRFia~~gFTpDVkVwE~~f~kd-G~fq------ev~rvf-----~L 274 (420)
T KOG2096|consen 223 ---------------SIDTNQSSNYDAAVSPD-GRFIAVSGFTPDVKVWEPIFTKD-GTFQ------EVKRVF-----SL 274 (420)
T ss_pred ---------------eeccccccccceeeCCC-CcEEEEecCCCCceEEEEEeccC-cchh------hhhhhh-----ee
Confidence 11112234567889997 79999999999999998643221 0010 001111 12
Q ss_pred CCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCC
Q 005502 275 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 275 ~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~ 310 (693)
.||.. .|+.++|+++.+.+++.+.||.++|||++-
T Consensus 275 kGH~s-aV~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 275 KGHQS-AVLAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred ccchh-heeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 56766 699999999999999999999999999864
No 128
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.8e-17 Score=182.56 Aligned_cols=242 Identities=17% Similarity=0.239 Sum_probs=175.3
Q ss_pred ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC-cEEEEe-------------------------------------
Q 005502 47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR-KLLHSI------------------------------------- 88 (693)
Q Consensus 47 ~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~-~~~~~l------------------------------------- 88 (693)
.+|++.-+.|+|.|+|++|.|++.||.|++|+.... ....++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~ 89 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEED 89 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCcc
Confidence 469999999999999999999999999999986432 111111
Q ss_pred --ccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEE
Q 005502 89 --ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSA 166 (693)
Q Consensus 89 --~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sg 166 (693)
....+-++.+++|+.+ |.++|.|+.|-.|++-++... .....+.+|..+|.+|.++| .+++||+.
T Consensus 90 ~iL~Rftlp~r~~~v~g~--g~~iaagsdD~~vK~~~~~D~----------s~~~~lrgh~apVl~l~~~p-~~~fLAvs 156 (933)
T KOG1274|consen 90 TILARFTLPIRDLAVSGS--GKMIAAGSDDTAVKLLNLDDS----------SQEKVLRGHDAPVLQLSYDP-KGNFLAVS 156 (933)
T ss_pred ceeeeeeccceEEEEecC--CcEEEeecCceeEEEEecccc----------chheeecccCCceeeeeEcC-CCCEEEEE
Confidence 0123446677777766 678888888888888877754 34678889999999999999 77999999
Q ss_pred eCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecC
Q 005502 167 SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR 246 (693)
Q Consensus 167 s~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r 246 (693)
+.||.|++||+..+..... +-.+.... . ......+..++|+|++ ..|++.+.|+.|++|++.
T Consensus 157 s~dG~v~iw~~~~~~~~~t-----------l~~v~k~n-----~-~~~s~i~~~~aW~Pk~-g~la~~~~d~~Vkvy~r~ 218 (933)
T KOG1274|consen 157 SCDGKVQIWDLQDGILSKT-----------LTGVDKDN-----E-FILSRICTRLAWHPKG-GTLAVPPVDNTVKVYSRK 218 (933)
T ss_pred ecCceEEEEEcccchhhhh-----------cccCCccc-----c-ccccceeeeeeecCCC-CeEEeeccCCeEEEEccC
Confidence 9999999999987653211 11000000 0 0013356789999985 567777789999999999
Q ss_pred CCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCcee
Q 005502 247 MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKI 326 (693)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~ 326 (693)
.+.....+.. ..+.. .++.+.|+|+|+||++++.||.|.|||..+-.. ......+..
T Consensus 219 ~we~~f~Lr~------------------~~~ss-~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~ 275 (933)
T KOG1274|consen 219 GWELQFKLRD------------------KLSSS-KFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCC 275 (933)
T ss_pred Cceeheeecc------------------ccccc-ceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEE
Confidence 8765543321 11222 389999999999999999999999999997221 233456778
Q ss_pred EEeccCCCcccccCCc
Q 005502 327 MSFTPTLNGLELQPPI 342 (693)
Q Consensus 327 ~~~~p~~~g~~~~~~~ 342 (693)
++|.|..+.+.+....
T Consensus 276 ~aw~p~~n~it~~~~~ 291 (933)
T KOG1274|consen 276 EAWKPNANAITLITAL 291 (933)
T ss_pred EecCCCCCeeEEEeec
Confidence 8899988887665433
No 129
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=3.5e-18 Score=174.79 Aligned_cols=203 Identities=18% Similarity=0.267 Sum_probs=160.7
Q ss_pred EEEEEECCC-------CCEEEEEeCCCcEEEEECCCCcEE--------------------EEeccCCCcceEEEEEeeCC
Q 005502 53 VNAISWNSK-------GSLLISGSDDTHINVWSYSSRKLL--------------------HSIETGHSANVFCTKFVPET 105 (693)
Q Consensus 53 V~~l~~s~~-------g~~LaSgs~Dg~I~IWd~~~~~~~--------------------~~l~~~h~~~I~sl~f~p~~ 105 (693)
..|++|... |+++|.|..|..|.|||+.-...+ .....+|+..|.++.|+-..
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 357777643 689999999999999998621100 00114799999999999875
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCC
Q 005502 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP 185 (693)
Q Consensus 106 ~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~ 185 (693)
-++||+|+.|.+|++||+.+. +|..++..|.+.|.+++|+|..+.+|++|+.|++|.+.|.|.....
T Consensus 256 -~nVLaSgsaD~TV~lWD~~~g----------~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s-- 322 (463)
T KOG0270|consen 256 -RNVLASGSADKTVKLWDVDTG----------KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS-- 322 (463)
T ss_pred -ceeEEecCCCceEEEEEcCCC----------CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc--
Confidence 679999999999999999976 6678888899999999999999999999999999999999964321
Q ss_pred CCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCccc
Q 005502 186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN 265 (693)
Q Consensus 186 ~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~ 265 (693)
..-|. ....|-.++|+|.....++++..||+|+-+|+|... .++.
T Consensus 323 ---------~~~wk--------------~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~------------~~vw 367 (463)
T KOG0270|consen 323 ---------GKEWK--------------FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG------------KPVW 367 (463)
T ss_pred ---------CceEE--------------eccceEEEEecCCCceeEEEecCCceEEeeecCCCC------------Ccee
Confidence 11221 134678899999989999999999999999999752 2222
Q ss_pred ccccCccccCCCCccceEEEEEcCCCC-EEEEEecCCcEEEEECCCC
Q 005502 266 YFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHA 311 (693)
Q Consensus 266 ~~~~~~~~~~~h~~~~V~~v~fspdg~-~L~sgs~Dg~V~lwDl~~~ 311 (693)
.. +.|.. +|.+|++++.-. .|++++.|+.|.+|++...
T Consensus 368 t~-------~AHd~-~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~ 406 (463)
T KOG0270|consen 368 TL-------KAHDD-EISGLSVNIQTPGLLSTASTDKVVKLWKFDVD 406 (463)
T ss_pred EE-------EeccC-CcceEEecCCCCcceeeccccceEEEEeecCC
Confidence 22 44555 699999998665 5678888999999999873
No 130
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=5.3e-18 Score=178.07 Aligned_cols=250 Identities=19% Similarity=0.306 Sum_probs=183.9
Q ss_pred hhhhccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC--------CcEEEEeccCCCcceEEEEEeeCC
Q 005502 34 SSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS--------RKLLHSIETGHSANVFCTKFVPET 105 (693)
Q Consensus 34 ~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~--------~~~~~~l~~~h~~~I~sl~f~p~~ 105 (693)
+.+.+...+..++..|.++|..+.|++....|++++.|++|++|++.. -+++.++ .+|.++|.|+++.++
T Consensus 278 ~a~~k~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tf-raH~gPVl~v~v~~n- 355 (577)
T KOG0642|consen 278 KAFTKKWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTF-RAHEGPVLCVVVPSN- 355 (577)
T ss_pred hhhheecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEE-ecccCceEEEEecCC-
Confidence 345666667779999999999999999999999999999999999932 2467777 799999999999998
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCCCCCCCCC-CCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCC
Q 005502 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNA-ITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP 184 (693)
Q Consensus 106 ~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~-~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~ 184 (693)
+..+++|+.||+|+.|++. .+....+... ......+.+|.+.|+.+++++ ....|++++.||+|++|+.....+|.
T Consensus 356 -~~~~ysgg~Dg~I~~w~~p-~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~~~ 432 (577)
T KOG0642|consen 356 -GEHCYSGGIDGTIRCWNLP-PNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESPCT 432 (577)
T ss_pred -ceEEEeeccCceeeeeccC-CCCCcccccCcchhccceeccccceeeeeecc-cccceeeecCCceEEeeccCCcCccc
Confidence 6999999999999999887 3332222211 123567889999999999998 55678899999999999987766531
Q ss_pred CCCCCCcccceE----------------------EEeccCCceeeecCC-----CCCccceEEEEEcCCCCcEEEEEeCC
Q 005502 185 PAGSSHQECRNI----------------------LLDLRCGAKRSLADP-----PKQTLSLKSCDISSTRPHLLLVGGSD 237 (693)
Q Consensus 185 ~~~~~~~~~~~~----------------------l~~~~~~~~~~l~~~-----~~~~~~v~sl~~sp~~~~~Latgs~D 237 (693)
...... ..... +.+........+... +.....+..+.++|. ..+.+++..|
T Consensus 433 f~~~~e-~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~-~~~~~~~hed 510 (577)
T KOG0642|consen 433 FGEPKE-HGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPT-ADITFTAHED 510 (577)
T ss_pred cCCccc-cCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCC-CCeeEecccC
Confidence 111100 01111 111111111111111 112235677888997 4689999999
Q ss_pred CcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCC
Q 005502 238 AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (693)
Q Consensus 238 g~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~ 311 (693)
+.|+++|..++.++.+. ..|.. .++++++.|+|.+|++++.|+.|++|.+...
T Consensus 511 ~~Ir~~dn~~~~~l~s~--------------------~a~~~-svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 511 RSIRFFDNKTGKILHSM--------------------VAHKD-SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred Cceecccccccccchhe--------------------eeccc-eecceeecCCCceEEeecCCceeehhhccch
Confidence 99999999988765433 12333 5999999999999999999999999999773
No 131
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.78 E-value=4.1e-18 Score=175.62 Aligned_cols=247 Identities=17% Similarity=0.248 Sum_probs=182.8
Q ss_pred CcCcccccchhhhcc--ccceEEeccC-CCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEE
Q 005502 25 DVNHSLQMHSSLVRR--LSQERELEGH-QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 101 (693)
Q Consensus 25 ~~~~~l~~~~~~i~~--l~~~~~l~gH-~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f 101 (693)
..+..+.+|...-+. ......+.|. .-||.|+.++ .++++|+..+.|+|||+....+.+.+ .+|...|++|.|
T Consensus 54 ~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S---~y~~sgG~~~~Vkiwdl~~kl~hr~l-kdh~stvt~v~Y 129 (673)
T KOG4378|consen 54 AGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQS---LYEISGGQSGCVKIWDLRAKLIHRFL-KDHQSTVTYVDY 129 (673)
T ss_pred CCceeEEEecccCCCCccceeeccccchHHHHhhhhcc---eeeeccCcCceeeehhhHHHHHhhhc-cCCcceeEEEEe
Confidence 344455555443331 2223334443 3466666665 79999999999999999854444444 899999999999
Q ss_pred eeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeecc-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 005502 102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC-HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180 (693)
Q Consensus 102 ~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~ 180 (693)
+-+ +.+||+++..|.|.|+.+.+.. ....+.. ....|.-+.++|....+|.+++.+|.|.+||+...
T Consensus 130 N~~--DeyiAsvs~gGdiiih~~~t~~----------~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~ 197 (673)
T KOG4378|consen 130 NNT--DEYIASVSDGGDIIIHGTKTKQ----------KTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGM 197 (673)
T ss_pred cCC--cceeEEeccCCcEEEEecccCc----------cccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCC
Confidence 987 7999999999999999998652 2233332 24567789999988889999999999999999765
Q ss_pred CCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCC
Q 005502 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP 260 (693)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~ 260 (693)
.+. ......|..+...|+|+|.+..+|++.+.|..|.+||++.....
T Consensus 198 sp~------------------------~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~--------- 244 (673)
T KOG4378|consen 198 SPI------------------------FHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAST--------- 244 (673)
T ss_pred Ccc------------------------cchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccc---------
Confidence 432 22223567788899999999999999999999999999965432
Q ss_pred CCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcce-EEeecCCCceeEEeccCC
Q 005502 261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRA-MRYTVGDASKIMSFTPTL 333 (693)
Q Consensus 261 ~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~-~~~~~~~~~~~~~~~p~~ 333 (693)
.|+.+- .+.+.|+|+++|.+|++|...|.|+.||++..+.+. +...+...+..++|.|..
T Consensus 245 -~~l~y~------------~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 245 -DRLTYS------------HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred -ceeeec------------CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 222221 157899999999999999999999999999866543 334445567777777653
No 132
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.8e-18 Score=178.00 Aligned_cols=130 Identities=24% Similarity=0.183 Sum_probs=117.8
Q ss_pred CcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCC---------CCcchhhhhhhHHHHHHhccccCcHHHHHHh
Q 005502 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGI---------GPMLRHECLCIRAALLLKRKWKNDAQMAIRD 429 (693)
Q Consensus 359 ~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~---------~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~D 429 (693)
..+.+...++.||.+|+.|+ |..|+..|.+|+....... ..+++-.||+|.|+||+|++. |.+|+.-
T Consensus 204 ~l~~A~~~ke~Gn~~fK~gk-~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~---~~~Ai~~ 279 (397)
T KOG0543|consen 204 RLEAADRKKERGNVLFKEGK-FKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKE---YKEAIES 279 (397)
T ss_pred HHHHHHHHHHhhhHHHhhch-HHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhh---HHHHHHH
Confidence 56778899999999999999 9999999999998754321 134556699999999999765 9999999
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHHHHHHHHHHH
Q 005502 430 CYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAE 492 (693)
Q Consensus 430 c~~Al~ldp~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l~~~i~~~~ 492 (693)
|+++|+++|+|+||+||||+||+++++|+.|..+|+++++++|+|++++.++..|++++++..
T Consensus 280 c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~ 342 (397)
T KOG0543|consen 280 CNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYE 342 (397)
T ss_pred HHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998876
No 133
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.76 E-value=1.6e-17 Score=176.37 Aligned_cols=252 Identities=18% Similarity=0.218 Sum_probs=165.4
Q ss_pred EeccCCCcEEE--EEECC---CCCEEEEEeCCCcEEEEECCCCcEE-----EEeccCCCcceEEEEEeeCCCCCEEEEEe
Q 005502 45 ELEGHQGCVNA--ISWNS---KGSLLISGSDDTHINVWSYSSRKLL-----HSIETGHSANVFCTKFVPETSDELVVSGA 114 (693)
Q Consensus 45 ~l~gH~~~V~~--l~~s~---~g~~LaSgs~Dg~I~IWd~~~~~~~-----~~l~~~h~~~I~sl~f~p~~~~~~l~sgs 114 (693)
....|.-+|.- ..|++ ..++||.+.+||.|.++|....... ......|...|+.++|.|. ...|++++
T Consensus 42 s~~~~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapg--e~~lVsas 119 (720)
T KOG0321|consen 42 SYANDGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPG--ESLLVSAS 119 (720)
T ss_pred ccccCCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCC--ceeEEEcc
Confidence 33344444544 66765 3569999999999999998754322 1222689999999999995 68999999
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccc
Q 005502 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (693)
Q Consensus 115 ~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~ 194 (693)
.|.++++||+...... -...+.+|...|.+++|.|.++..|++|+.||.|.|||+|....-. ....|
T Consensus 120 GDsT~r~Wdvk~s~l~--------G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~----~e~~~- 186 (720)
T KOG0321|consen 120 GDSTIRPWDVKTSRLV--------GGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDA----LEEFD- 186 (720)
T ss_pred CCceeeeeeeccceee--------cceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhh----HHHHh-
Confidence 9999999999975221 1234889999999999999999999999999999999999754110 00001
Q ss_pred eEEEeccCCce-------eeecCCCCCccceEE---EEEcCCCCcEEEEEeC-CCcEEEEecCCCCCCcccccCCCCCCc
Q 005502 195 NILLDLRCGAK-------RSLADPPKQTLSLKS---CDISSTRPHLLLVGGS-DAFARLYDRRMLPPLTSCQKRMSPPPC 263 (693)
Q Consensus 195 ~~l~~~~~~~~-------~~l~~~~~~~~~v~s---l~~sp~~~~~Latgs~-Dg~I~lwD~r~~~~~~~~~~~~~~~~~ 263 (693)
+.+++...+.. ..+.....+...|.+ +.+..| ...||+++. |+.|++||+|........ .|...
T Consensus 187 ~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkD-e~tlaSaga~D~~iKVWDLRk~~~~~r~----ep~~~ 261 (720)
T KOG0321|consen 187 NRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKD-ESTLASAGAADSTIKVWDLRKNYTAYRQ----EPRGS 261 (720)
T ss_pred hhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEec-cceeeeccCCCcceEEEeeccccccccc----CCCcc
Confidence 11111111100 001111112223333 344444 467777766 999999999976432111 11111
Q ss_pred ccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCC
Q 005502 264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGD 322 (693)
Q Consensus 264 ~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~ 322 (693)
..+ +.+ ......++++..+..|.+|++.+.|+.||+||+.+-...++....+.
T Consensus 262 ~~~--~t~----skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~ 314 (720)
T KOG0321|consen 262 DKY--PTH----SKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGK 314 (720)
T ss_pred cCc--cCc----ccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCc
Confidence 111 111 12233588999999999999999999999999998665555443333
No 134
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=5e-18 Score=186.33 Aligned_cols=195 Identities=19% Similarity=0.242 Sum_probs=144.4
Q ss_pred hhccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeC
Q 005502 36 LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG 115 (693)
Q Consensus 36 ~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~ 115 (693)
++=.-+++.+|.||.+.|..|.|+.+ .+|+|+|.|.+|+||++....|+++| .|..-|+||+|+|.. +++|++|+.
T Consensus 355 f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F--~HndfVTcVaFnPvD-DryFiSGSL 430 (712)
T KOG0283|consen 355 FVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF--SHNDFVTCVAFNPVD-DRYFISGSL 430 (712)
T ss_pred ccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE--ecCCeeEEEEecccC-CCcEeeccc
Confidence 44445678899999999999999975 57899999999999999999999999 699999999999985 899999999
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCC--------
Q 005502 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG-------- 187 (693)
Q Consensus 116 Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~-------- 187 (693)
|+.||||++.. ..+..+..-..-|++++|.| +++..+.|+.+|.+++|+++..+......
T Consensus 431 D~KvRiWsI~d-----------~~Vv~W~Dl~~lITAvcy~P-dGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk 498 (712)
T KOG0283|consen 431 DGKVRLWSISD-----------KKVVDWNDLRDLITAVCYSP-DGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKK 498 (712)
T ss_pred ccceEEeecCc-----------CeeEeehhhhhhheeEEecc-CCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcc
Confidence 99999999985 33555555568999999999 57888899999999999988654220000
Q ss_pred ------------CCC--------cccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCC
Q 005502 188 ------------SSH--------QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (693)
Q Consensus 188 ------------~~~--------~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~ 247 (693)
.+. .+.+..|++++................-....|+.+ +++|++|+.|..|+||+...
T Consensus 499 ~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~D-gk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 499 KQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSD-GKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred ccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccC-CCEEEEeecCceEEEEeCCC
Confidence 000 011122233221111100000111123356788885 89999999999999999854
No 135
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.76 E-value=1.1e-16 Score=174.71 Aligned_cols=289 Identities=20% Similarity=0.320 Sum_probs=205.6
Q ss_pred hhccccceEEeccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEe
Q 005502 36 LVRRLSQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA 114 (693)
Q Consensus 36 ~i~~l~~~~~l~gH~~~V~~l~~s~~g~-~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs 114 (693)
.++..+.+.+++.-.+.|++|+|..||+ +||+|+..|.+.+||++..+.+..+...|.+.|....|.|. ...++|++
T Consensus 230 NlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~--epVl~ta~ 307 (910)
T KOG1539|consen 230 NLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPG--EPVLVTAG 307 (910)
T ss_pred EcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCC--CceEeecc
Confidence 4566667788885579999999999986 77788888999999999988888887799999999999998 58999999
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCC-----------
Q 005502 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC----------- 183 (693)
Q Consensus 115 ~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~----------- 183 (693)
.|+.+++|=...+.+.. ..+..-.+|+.+..+|.|.-.++..+.+++.|++++.+++......
T Consensus 308 ~DnSlk~~vfD~~dg~p------R~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~ 381 (910)
T KOG1539|consen 308 ADNSLKVWVFDSGDGVP------RLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKR 381 (910)
T ss_pred CCCceeEEEeeCCCCcc------hheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccc
Confidence 99999999777554422 4567778999999999999778889999999999888876542110
Q ss_pred --------------CCCC----------------CCC--------------------------------------cccce
Q 005502 184 --------------PPAG----------------SSH--------------------------------------QECRN 195 (693)
Q Consensus 184 --------------~~~~----------------~~~--------------------------------------~~~~~ 195 (693)
+++. ..| ..|.+
T Consensus 382 ~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGN 461 (910)
T KOG1539|consen 382 AKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGN 461 (910)
T ss_pred cccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCc
Confidence 0000 000 00000
Q ss_pred -EE----------EeccCCcee-eecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCc
Q 005502 196 -IL----------LDLRCGAKR-SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC 263 (693)
Q Consensus 196 -~l----------~~~~~~~~~-~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~ 263 (693)
.+ +++.+|-.. .....+.|..+|+.++.... ++.+++++.+|.+.+||........++....... +
T Consensus 462 F~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~-n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~-~ 539 (910)
T KOG1539|consen 462 FVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGT-NRLLVSAGADGILKFWDFKKKVLKKSLRLGSSIT-G 539 (910)
T ss_pred eEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCC-CceEEEccCcceEEEEecCCcceeeeeccCCCcc-e
Confidence 01 111111111 11123567788999999886 5799999999999999998876554443322111 1
Q ss_pred ccccc-----------------cCc-----cccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecC
Q 005502 264 VNYFC-----------------PMH-----LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVG 321 (693)
Q Consensus 264 ~~~~~-----------------~~~-----~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~ 321 (693)
+.+.. ..+ -...||.+ .|+.++|||||++|++++.|++|++||+.++.+ .-.+..+
T Consensus 540 iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~n-ritd~~FS~DgrWlisasmD~tIr~wDlpt~~l-ID~~~vd 617 (910)
T KOG1539|consen 540 IVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGN-RITDMTFSPDGRWLISASMDSTIRTWDLPTGTL-IDGLLVD 617 (910)
T ss_pred eeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcccc-ceeeeEeCCCCcEEEEeecCCcEEEEeccCcce-eeeEecC
Confidence 11100 000 00145766 699999999999999999999999999999654 3344456
Q ss_pred CCceeEEeccCCCcc
Q 005502 322 DASKIMSFTPTLNGL 336 (693)
Q Consensus 322 ~~~~~~~~~p~~~g~ 336 (693)
.+...+.|+|+.+-+
T Consensus 618 ~~~~sls~SPngD~L 632 (910)
T KOG1539|consen 618 SPCTSLSFSPNGDFL 632 (910)
T ss_pred CcceeeEECCCCCEE
Confidence 778888899875544
No 136
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.75 E-value=6.5e-17 Score=157.06 Aligned_cols=231 Identities=16% Similarity=0.275 Sum_probs=174.2
Q ss_pred hccccceEEec-cCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcE-EEEec----cCCCcceEEEEEeeCCCCCEE
Q 005502 37 VRRLSQERELE-GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL-LHSIE----TGHSANVFCTKFVPETSDELV 110 (693)
Q Consensus 37 i~~l~~~~~l~-gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~-~~~l~----~~h~~~I~sl~f~p~~~~~~l 110 (693)
...++++..|. .|-+.|+|+.|.|++..||+-. |..|.+|++..+.. +..+. ..|....++-+|+|..+++.+
T Consensus 109 ~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv 187 (370)
T KOG1007|consen 109 SSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQV 187 (370)
T ss_pred cchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceE
Confidence 34566777776 6778999999999999999876 78999999987765 33332 246677899999997767888
Q ss_pred EEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCC
Q 005502 111 VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSH 190 (693)
Q Consensus 111 ~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~ 190 (693)
++. .|+++..||+++.. +....-.+|...|..+.|+|....+|+||+.||.|++||+|..+.
T Consensus 188 ~tt-~d~tl~~~D~RT~~---------~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~-------- 249 (370)
T KOG1007|consen 188 ATT-SDSTLQFWDLRTMK---------KNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF-------- 249 (370)
T ss_pred EEe-CCCcEEEEEccchh---------hhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc--------
Confidence 776 57999999999643 224445679999999999998889999999999999999998653
Q ss_pred cccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccC-------------
Q 005502 191 QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR------------- 257 (693)
Q Consensus 191 ~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~------------- 257 (693)
++...+.|...|.++.|+|...+++++|+.|..|.+|..........+...
T Consensus 250 ----------------pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dsee 313 (370)
T KOG1007|consen 250 ----------------PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEE 313 (370)
T ss_pred ----------------cccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHH
Confidence 345566788899999999998899999999999999987654422111110
Q ss_pred ---CCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEE-ecCCcEEEEECCC
Q 005502 258 ---MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS-YSGEHVYLMDVNH 310 (693)
Q Consensus 258 ---~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sg-s~Dg~V~lwDl~~ 310 (693)
..+...+.+| ..|.+ .|.+++||.-..+++++ +.||.|.|=.+..
T Consensus 314 r~kpL~dg~l~ty-------dehED-SVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 314 RVKPLQDGQLETY-------DEHED-SVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred hcccccccccccc-------ccccc-ceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 0111122222 34555 69999999888876655 5699988766544
No 137
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=9.6e-18 Score=189.13 Aligned_cols=231 Identities=20% Similarity=0.293 Sum_probs=171.8
Q ss_pred CCcEEEEEECCCCCE----EEEEeCCCcEEEEECCCC---c---EEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 005502 50 QGCVNAISWNSKGSL----LISGSDDTHINVWSYSSR---K---LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (693)
Q Consensus 50 ~~~V~~l~~s~~g~~----LaSgs~Dg~I~IWd~~~~---~---~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V 119 (693)
....+.|+|.+.|.. ||.|..||.|.+||...- . .+.+. ..|.+.|..+.|++.. +++|++|+.||.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~-~~h~G~V~gLDfN~~q-~nlLASGa~~geI 141 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATK-SKHTGPVLGLDFNPFQ-GNLLASGADDGEI 141 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhh-cccCCceeeeeccccC-CceeeccCCCCcE
Confidence 346889999997765 899999999999998752 2 33344 5799999999999997 7899999999999
Q ss_pred EEEEcCCCCCCCCCCCCCCCcee-eccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEE
Q 005502 120 RLFNLSRFSGRGLDDNAITPSAL-YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (693)
Q Consensus 120 ~vwdl~~~~~~~~~~~~~~~~~~-~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~ 198 (693)
.|||++.... +... -..-...|++|+|+....++|++++.+|.+.|||+|..+.+ +
T Consensus 142 ~iWDlnn~~t---------P~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pi--------------i 198 (1049)
T KOG0307|consen 142 LIWDLNKPET---------PFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPI--------------I 198 (1049)
T ss_pred EEeccCCcCC---------CCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcc--------------c
Confidence 9999997431 1111 22246789999999888899999999999999999987533 1
Q ss_pred eccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCC---CcEEEEecCCCCCCcccccCCCCCCcccccccCccccC
Q 005502 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (693)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~D---g~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (693)
.+.. ... ...+..++|+|+....|++++.| ..|.+||+|... ..++.+ .
T Consensus 199 ~ls~--------~~~-~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as------------sP~k~~-------~ 250 (1049)
T KOG0307|consen 199 KLSD--------TPG-RMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS------------SPLKIL-------E 250 (1049)
T ss_pred cccc--------CCC-ccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC------------Cchhhh-------c
Confidence 1111 111 14578899999988889988875 569999999642 112222 3
Q ss_pred CCCccceEEEEEcCCC-CEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCC
Q 005502 276 GRSSLHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN 334 (693)
Q Consensus 276 ~h~~~~V~~v~fspdg-~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~ 334 (693)
+|.. .|.++.|++.+ .+|++++.|+.|.+|+.++++....+-..+.-...+.|.|...
T Consensus 251 ~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P 309 (1049)
T KOG0307|consen 251 GHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNP 309 (1049)
T ss_pred cccc-ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCc
Confidence 3444 59999999977 7788888899999999999765444444344455566766544
No 138
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.74 E-value=2.2e-18 Score=171.29 Aligned_cols=118 Identities=22% Similarity=0.149 Sum_probs=110.9
Q ss_pred CcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCC
Q 005502 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS 438 (693)
Q Consensus 359 ~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp 438 (693)
......+++++||.+|++|+ |.+||++|+.+|...|.+ +++|.|||.+|+|.+. |..|..||+.||.||-
T Consensus 93 LL~~~SEiKE~GN~yFKQgK-y~EAIDCYs~~ia~~P~N------pV~~~NRA~AYlk~K~---FA~AE~DC~~AiaLd~ 162 (536)
T KOG4648|consen 93 LLKKASEIKERGNTYFKQGK-YEEAIDCYSTAIAVYPHN------PVYHINRALAYLKQKS---FAQAEEDCEAAIALDK 162 (536)
T ss_pred HHHhhHHHHHhhhhhhhccc-hhHHHHHhhhhhccCCCC------ccchhhHHHHHHHHHH---HHHHHHhHHHHHHhhH
Confidence 35567789999999999999 999999999999999977 8999999999999887 9999999999999999
Q ss_pred CCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHHHHH
Q 005502 439 SSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKK 486 (693)
Q Consensus 439 ~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l~~ 486 (693)
.++|||.||+.|..+||...||.++++.++.|+|++.+..+.+.++..
T Consensus 163 ~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S 210 (536)
T KOG4648|consen 163 LYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS 210 (536)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999888888877776
No 139
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.74 E-value=5.3e-17 Score=163.70 Aligned_cols=229 Identities=18% Similarity=0.303 Sum_probs=165.4
Q ss_pred EeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEECCCC-------cEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCC
Q 005502 45 ELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSR-------KLLHSIETGHSANVFCTKFVPETSDELVVSGAGD 116 (693)
Q Consensus 45 ~l~gH~~~V~~l~~s~-~g~~LaSgs~Dg~I~IWd~~~~-------~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~D 116 (693)
.+.||+++|..++|+| +...|||||+|.+|.||.+..+ +.+..+ .+|...|.-|+|+|.. .+.|+|++.|
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L-~gH~rrVg~V~wHPtA-~NVLlsag~D 153 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVEL-YGHQRRVGLVQWHPTA-PNVLLSAGSD 153 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEE-eecceeEEEEeecccc-hhhHhhccCC
Confidence 3579999999999999 5679999999999999998754 245555 7999999999999997 6899999999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceE
Q 005502 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (693)
Q Consensus 117 g~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~ 196 (693)
.+|.+||+.++ +.+..+. |...|+++.|+. ++.+|+|++.|..||+||.|+++..... ..|.
T Consensus 154 n~v~iWnv~tg----------eali~l~-hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~-~~he----- 215 (472)
T KOG0303|consen 154 NTVSIWNVGTG----------EALITLD-HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEG-VAHE----- 215 (472)
T ss_pred ceEEEEeccCC----------ceeeecC-CCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeec-cccc-----
Confidence 99999999976 3344555 999999999998 7889999999999999999998744221 0100
Q ss_pred EEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEe---CCCcEEEEecCCCCCCcccccCCCCCCcccccccCccc
Q 005502 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG---SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 273 (693)
Q Consensus 197 l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs---~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (693)
...-..+.|-.+ +.++.||- ++..+-|||..++..-- .++..
T Consensus 216 ------------------G~k~~Raifl~~-g~i~tTGfsr~seRq~aLwdp~nl~eP~----------~~~el------ 260 (472)
T KOG0303|consen 216 ------------------GAKPARAIFLAS-GKIFTTGFSRMSERQIALWDPNNLEEPI----------ALQEL------ 260 (472)
T ss_pred ------------------CCCcceeEEecc-CceeeeccccccccceeccCcccccCcc----------eeEEe------
Confidence 111223345444 45555553 47888999987654211 11111
Q ss_pred cCCCCccceEEEEEcCCCCEEEEEe-cCCcEEEEECCCCCcceEEe----ecCCCceeEEeccC
Q 005502 274 EHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHAGGRAMRY----TVGDASKIMSFTPT 332 (693)
Q Consensus 274 ~~~h~~~~V~~v~fspdg~~L~sgs-~Dg~V~lwDl~~~~~~~~~~----~~~~~~~~~~~~p~ 332 (693)
..+..|.---|.++...|+.++ +|+.|+.|.+.+. .+-+.| ...++.+.+.|.|.
T Consensus 261 ---DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d-~P~~hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 261 ---DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE-PPFVHYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred ---ccCCceEEeeecCCCCEEEEEecCCcceEEEEecCC-CceeEEecccccCCcccccccccc
Confidence 1122466666788888887665 5999999999983 333333 34455666666664
No 140
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=4.7e-16 Score=152.85 Aligned_cols=211 Identities=15% Similarity=0.207 Sum_probs=148.6
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCC
Q 005502 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 127 (693)
Q Consensus 48 gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~ 127 (693)
.|..++.+++|.+ ...+++|+.||.|+.+|+.++.... + ..|..+|.||.+++. ...+++|+.|++|++||.+..
T Consensus 52 ~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~-i-gth~~~i~ci~~~~~--~~~vIsgsWD~~ik~wD~R~~ 126 (323)
T KOG1036|consen 52 KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQ-I-GTHDEGIRCIEYSYE--VGCVISGSWDKTIKFWDPRNK 126 (323)
T ss_pred ecCCceeeeeccC-CceEEEeccCceEEEEEecCCccee-e-ccCCCceEEEEeecc--CCeEEEcccCccEEEEecccc
Confidence 3889999999997 4568899999999999999876554 3 479999999999988 478999999999999999953
Q ss_pred CCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCC-----------------
Q 005502 128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSH----------------- 190 (693)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~----------------- 190 (693)
.....+. ....|.++.. .++.|+.|+.|..|.+||+|+...........
T Consensus 127 ----------~~~~~~d-~~kkVy~~~v---~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy 192 (323)
T KOG1036|consen 127 ----------VVVGTFD-QGKKVYCMDV---SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGY 192 (323)
T ss_pred ----------ccccccc-cCceEEEEec---cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCce
Confidence 2233333 3347888887 45788899999999999999865432110000
Q ss_pred ----cccceEEEeccCC----cee-ee------cCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccc
Q 005502 191 ----QECRNILLDLRCG----AKR-SL------ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ 255 (693)
Q Consensus 191 ----~~~~~~l~~~~~~----~~~-~l------~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~ 255 (693)
.+++..+-.+... ..+ .+ ..-.....+|++|+|+|- ...||||+.||.|.+||+.+.+.+..+.
T Consensus 193 ~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~-~~tfaTgGsDG~V~~Wd~~~rKrl~q~~ 271 (323)
T KOG1036|consen 193 VVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI-HGTFATGGSDGIVNIWDLFNRKRLKQLA 271 (323)
T ss_pred EEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc-cceEEecCCCceEEEccCcchhhhhhcc
Confidence 0011000000000 000 00 000112247899999997 6799999999999999998766543321
Q ss_pred cCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEec
Q 005502 256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS 299 (693)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~ 299 (693)
+. ...|.+++|+.+|..||+++.
T Consensus 272 --------------------~~-~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 272 --------------------KY-ETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred --------------------CC-CCceEEEEeccCCCeEEEEec
Confidence 11 125999999999999999875
No 141
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.74 E-value=3.8e-17 Score=168.67 Aligned_cols=223 Identities=13% Similarity=0.224 Sum_probs=167.6
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEec-cCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCC
Q 005502 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 128 (693)
Q Consensus 50 ~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~-~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~ 128 (693)
..-|.++...|||+.|++|+.-.++.|||+.........+ +...-....++.+|+ .++.++|..||.|.|||+...
T Consensus 465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spD--akvcFsccsdGnI~vwDLhnq- 541 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD--AKVCFSCCSDGNIAVWDLHNQ- 541 (705)
T ss_pred ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCc--cceeeeeccCCcEEEEEcccc-
Confidence 4568899999999999999999999999998654432221 233346778999999 488999999999999999964
Q ss_pred CCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCC--------CCCCcccceEEEec
Q 005502 129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA--------GSSHQECRNILLDL 200 (693)
Q Consensus 129 ~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~--------~~~~~~~~~~l~~~ 200 (693)
..+..+++|.+.+.||.+++ ++..||||+-|.+||.||+|++...... .........+.+.+
T Consensus 542 ---------~~VrqfqGhtDGascIdis~-dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGM 611 (705)
T KOG0639|consen 542 ---------TLVRQFQGHTDGASCIDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGM 611 (705)
T ss_pred ---------eeeecccCCCCCceeEEecC-CCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeec
Confidence 55889999999999999999 7789999999999999999998754211 01111111222333
Q ss_pred cCCceeeec-------CCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccc
Q 005502 201 RCGAKRSLA-------DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 273 (693)
Q Consensus 201 ~~~~~~~l~-------~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (693)
..+....+. ....|..-|.++.|.+. |+++++.+.|..+..|.+..+..+...
T Consensus 612 ens~vevlh~skp~kyqlhlheScVLSlKFa~c-GkwfvStGkDnlLnawrtPyGasiFqs------------------- 671 (705)
T KOG0639|consen 612 ENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYC-GKWFVSTGKDNLLNAWRTPYGASIFQS------------------- 671 (705)
T ss_pred ccCcEEEEecCCccceeecccccEEEEEEeccc-CceeeecCchhhhhhccCccccceeec-------------------
Confidence 333222221 12235567899999997 799999999999999988766433211
Q ss_pred cCCCCccceEEEEEcCCCCEEEEEecCCcEEEEEC
Q 005502 274 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV 308 (693)
Q Consensus 274 ~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl 308 (693)
.....|+++.+|.|.++|++|++|....+|.+
T Consensus 672 ---kE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 672 ---KESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ---cccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 22336999999999999999999988888764
No 142
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.73 E-value=1.1e-16 Score=155.79 Aligned_cols=233 Identities=15% Similarity=0.263 Sum_probs=172.8
Q ss_pred cCCCcEEEEEECCCC-----CEEEEEeCCCcEEEEECCC--CcEE--EEe----ccCCCcceEEEEEeeCCCCCEEEEEe
Q 005502 48 GHQGCVNAISWNSKG-----SLLISGSDDTHINVWSYSS--RKLL--HSI----ETGHSANVFCTKFVPETSDELVVSGA 114 (693)
Q Consensus 48 gH~~~V~~l~~s~~g-----~~LaSgs~Dg~I~IWd~~~--~~~~--~~l----~~~h~~~I~sl~f~p~~~~~~l~sgs 114 (693)
.|.-+++.+.|.|+. .+|||.++ .++||.+.. .+.. ..+ ...+.+++++..|+.-. .++|.+++
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~d-p~~igtSS 170 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVD-PNLIGTSS 170 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCC-cceeEeec
Confidence 588899999999975 47888765 699999873 2211 111 13567899999999764 68999999
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccc
Q 005502 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (693)
Q Consensus 115 ~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~ 194 (693)
-|.+..|||+..+.. ......+-+|...|..|+|...+..+|+|+|.||.||+||+|...-.
T Consensus 171 iDTTCTiWdie~~~~-------~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS----------- 232 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVS-------GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS----------- 232 (364)
T ss_pred ccCeEEEEEEeeccc-------cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc-----------
Confidence 999999999997411 01234556799999999999877889999999999999999976421
Q ss_pred eEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCC-CcEEEEecCCCCCCcccccCCCCCCcccccccCccc
Q 005502 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 273 (693)
Q Consensus 195 ~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~D-g~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (693)
.+++. .+....++..++|++.+++++|+-..| ..|.|.|+|... ..+. .
T Consensus 233 TIIYE-----------~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~------------tpva-------~ 282 (364)
T KOG0290|consen 233 TIIYE-----------DPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC------------TPVA-------R 282 (364)
T ss_pred eEEec-----------CCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCC------------ccee-------h
Confidence 23332 222245788999999999999987655 568999999632 1111 1
Q ss_pred cCCCCccceEEEEEcCCC-CEEEEEecCCcEEEEECCCCCc-----ceEEeecCCCceeEEeccC
Q 005502 274 EHGRSSLHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNHAGG-----RAMRYTVGDASKIMSFTPT 332 (693)
Q Consensus 274 ~~~h~~~~V~~v~fspdg-~~L~sgs~Dg~V~lwDl~~~~~-----~~~~~~~~~~~~~~~~~p~ 332 (693)
.++|.. .|+.|+|.|.. .+|++++.|.++.+||+..... +...|..++.++.+.|+|.
T Consensus 283 L~~H~a-~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~ 346 (364)
T KOG0290|consen 283 LRNHQA-SVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSS 346 (364)
T ss_pred hhcCcc-cccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeeccc
Confidence 145665 69999999964 6889999999999999987543 3445566667777777764
No 143
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=6.1e-16 Score=152.79 Aligned_cols=214 Identities=14% Similarity=0.215 Sum_probs=158.0
Q ss_pred hccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCC
Q 005502 37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD 116 (693)
Q Consensus 37 i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~D 116 (693)
+..-+.++-|.||...|++|+.+|-+..++|++.|++|++||+...++...+. ...-..++|.|. |-++|++...
T Consensus 87 l~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~---~~~~pi~AfDp~--GLifA~~~~~ 161 (311)
T KOG1446|consen 87 LHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN---LSGRPIAAFDPE--GLIFALANGS 161 (311)
T ss_pred eecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe---cCCCcceeECCC--CcEEEEecCC
Confidence 34456788899999999999999999999999999999999999888877762 333346789999 6888888887
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCceeec---cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCccc
Q 005502 117 AEVRLFNLSRFSGRGLDDNAITPSALYQ---CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 193 (693)
Q Consensus 117 g~V~vwdl~~~~~~~~~~~~~~~~~~~~---~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~ 193 (693)
..|++||++.-.. .|..++. .-....+.|.|+| +++.|+.+...+.+++.|.-.+...
T Consensus 162 ~~IkLyD~Rs~dk--------gPF~tf~i~~~~~~ew~~l~FS~-dGK~iLlsT~~s~~~~lDAf~G~~~---------- 222 (311)
T KOG1446|consen 162 ELIKLYDLRSFDK--------GPFTTFSITDNDEAEWTDLEFSP-DGKSILLSTNASFIYLLDAFDGTVK---------- 222 (311)
T ss_pred CeEEEEEecccCC--------CCceeEccCCCCccceeeeEEcC-CCCEEEEEeCCCcEEEEEccCCcEe----------
Confidence 7999999997533 2233332 3467889999999 6677778888899999998776521
Q ss_pred ceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccc
Q 005502 194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 273 (693)
Q Consensus 194 ~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (693)
. .+...+.....--+.+|.|+ ++.+++|+.||+|.+|+++++..+..+..+
T Consensus 223 -~-----------tfs~~~~~~~~~~~a~ftPd-s~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~---------------- 273 (311)
T KOG1446|consen 223 -S-----------TFSGYPNAGNLPLSATFTPD-SKFVLSGSDDGTIHVWNLETGKKVAVLRGP---------------- 273 (311)
T ss_pred -e-----------eEeeccCCCCcceeEEECCC-CcEEEEecCCCcEEEEEcCCCcEeeEecCC----------------
Confidence 0 11111111212257789997 799999999999999999988766544221
Q ss_pred cCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECC
Q 005502 274 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 309 (693)
Q Consensus 274 ~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~ 309 (693)
...++.++.|+|.-..+++++ ..+.+|=..
T Consensus 274 ----~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~ 303 (311)
T KOG1446|consen 274 ----NGGPVSCVRFNPRYAMFVSAS--SNLVFWLPD 303 (311)
T ss_pred ----CCCCccccccCCceeeeeecC--ceEEEEecc
Confidence 122578888999877766654 456666443
No 144
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.3e-17 Score=175.90 Aligned_cols=120 Identities=21% Similarity=0.183 Sum_probs=112.0
Q ss_pred CcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCC
Q 005502 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS 438 (693)
Q Consensus 359 ~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp 438 (693)
.++.+.+.+.+||++|+.|+ |..||..|++||...|++ +.+|+|||+||+|++. +..|++||.++|+|||
T Consensus 354 ~pe~A~e~r~kGne~Fk~gd-y~~Av~~YteAIkr~P~D------a~lYsNRAac~~kL~~---~~~aL~Da~~~ieL~p 423 (539)
T KOG0548|consen 354 NPEKAEEEREKGNEAFKKGD-YPEAVKHYTEAIKRDPED------ARLYSNRAACYLKLGE---YPEALKDAKKCIELDP 423 (539)
T ss_pred ChhHHHHHHHHHHHHHhccC-HHHHHHHHHHHHhcCCch------hHHHHHHHHHHHHHhh---HHHHHHHHHHHHhcCc
Confidence 55668889999999999999 999999999999999988 8999999999999765 9999999999999999
Q ss_pred CCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHHHHHHH
Q 005502 439 SSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHI 488 (693)
Q Consensus 439 ~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l~~~i 488 (693)
+++|||+|.|.||..|.+|+.|++.|+.+++++|++.++...+.++.+.+
T Consensus 424 ~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 424 NFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998887777776644
No 145
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.72 E-value=8.6e-17 Score=166.11 Aligned_cols=233 Identities=17% Similarity=0.242 Sum_probs=174.9
Q ss_pred ccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC---cEEEEecc-CCCcceEEEEEeeCCCCCEEEEEeC
Q 005502 40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR---KLLHSIET-GHSANVFCTKFVPETSDELVVSGAG 115 (693)
Q Consensus 40 l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~---~~~~~l~~-~h~~~I~sl~f~p~~~~~~l~sgs~ 115 (693)
++.+.+|. |..-|.++.++...+.+.||+. |.|+|||+... ..+..+.. .-..-|.+++..|+ ++.|++|+.
T Consensus 410 arq~~tL~-HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pd--grtLivGGe 485 (705)
T KOG0639|consen 410 ARQINTLA-HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPD--GRTLIVGGE 485 (705)
T ss_pred HHhhhhhc-cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCC--CceEEeccc
Confidence 33444554 8899999999999999999986 78999999643 23333321 23567899999999 799999999
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccce
Q 005502 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (693)
Q Consensus 116 Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~ 195 (693)
-.++.|||+...+.+. ...+.+..-..+.++.+| +.++.+++..||.|.|||++...
T Consensus 486 astlsiWDLAapTpri--------kaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~-------------- 542 (705)
T KOG0639|consen 486 ASTLSIWDLAAPTPRI--------KAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQT-------------- 542 (705)
T ss_pred cceeeeeeccCCCcch--------hhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccce--------------
Confidence 9999999999764322 222333334577899999 66888899999999999998754
Q ss_pred EEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccC
Q 005502 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (693)
Q Consensus 196 ~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (693)
.+..+.+|...+.||.++++ |..|-||+-|.+||.||+|.+..+...
T Consensus 543 -----------~VrqfqGhtDGascIdis~d-GtklWTGGlDntvRcWDlregrqlqqh--------------------- 589 (705)
T KOG0639|consen 543 -----------LVRQFQGHTDGASCIDISKD-GTKLWTGGLDNTVRCWDLREGRQLQQH--------------------- 589 (705)
T ss_pred -----------eeecccCCCCCceeEEecCC-CceeecCCCccceeehhhhhhhhhhhh---------------------
Confidence 34456688899999999997 789999999999999999987543211
Q ss_pred CCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCC
Q 005502 276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN 334 (693)
Q Consensus 276 ~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~ 334 (693)
.....|.++..+|++.+|++|..++.|.|-...... ...+..+..-+-.+.|++..+
T Consensus 590 -dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~-kyqlhlheScVLSlKFa~cGk 646 (705)
T KOG0639|consen 590 -DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-KYQLHLHESCVLSLKFAYCGK 646 (705)
T ss_pred -hhhhhheecccCCCccceeeecccCcEEEEecCCcc-ceeecccccEEEEEEecccCc
Confidence 112259999999999999999999999998877643 333344444455566766543
No 146
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=1.8e-17 Score=186.92 Aligned_cols=219 Identities=17% Similarity=0.217 Sum_probs=174.3
Q ss_pred ccccceEEeccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEECCCCcEEEEe-ccCCCcceEEEEEeeCCCCCEEEEEeC
Q 005502 38 RRLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSI-ETGHSANVFCTKFVPETSDELVVSGAG 115 (693)
Q Consensus 38 ~~l~~~~~l~gH~~~V~~l~~s~~-g~~LaSgs~Dg~I~IWd~~~~~~~~~l-~~~h~~~I~sl~f~p~~~~~~l~sgs~ 115 (693)
....++.++..|+|.|..|.|++. +++||+|++||.|.|||+...+...+. ...-.+.|.+|+|+..- .++|++++.
T Consensus 104 ~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkv-qhILAS~s~ 182 (1049)
T KOG0307|consen 104 ASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKV-SHILASGSP 182 (1049)
T ss_pred cchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhh-hHHhhccCC
Confidence 345567778899999999999996 559999999999999999865443333 22356789999999874 689999999
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCCceeeccCCC--CeEEEEEecCCCcEEEEEeCCC---cEEEEeCCCCCCCCCCCCCC
Q 005502 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR--RVKKLAVEVGNPHVVWSASEDG---TLRQHDFRQGSSCPPAGSSH 190 (693)
Q Consensus 116 Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~--~V~~l~~sp~~~~~l~Sgs~Dg---~V~iwDlr~~~~~~~~~~~~ 190 (693)
+|.+.|||++.. +++..+..|.. .+..|+|+|++...|+++++|. .|.+||+|.....
T Consensus 183 sg~~~iWDlr~~----------~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP------- 245 (1049)
T KOG0307|consen 183 SGRAVIWDLRKK----------KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSP------- 245 (1049)
T ss_pred CCCceeccccCC----------CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCc-------
Confidence 999999999965 34555554544 4778999999888898988764 7999999986533
Q ss_pred cccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccC
Q 005502 191 QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM 270 (693)
Q Consensus 191 ~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~ 270 (693)
+.....|...|.++.|++.+.++|++++.|+.|.+|+..+++.+..+.
T Consensus 246 -----------------~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p--------------- 293 (1049)
T KOG0307|consen 246 -----------------LKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP--------------- 293 (1049)
T ss_pred -----------------hhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC---------------
Confidence 222246778899999999988999999999999999999987654431
Q ss_pred ccccCCCCccceEEEEEcCCCC-EEEEEecCCcEEEEECCCCC
Q 005502 271 HLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 271 ~~~~~~h~~~~V~~v~fspdg~-~L~sgs~Dg~V~lwDl~~~~ 312 (693)
..+.++..+.|.|... .+++++-||.|-||.+.+..
T Consensus 294 ------~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 294 ------AQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ------CCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 1223789999999877 66677779999999998855
No 147
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=2e-17 Score=171.70 Aligned_cols=120 Identities=23% Similarity=0.155 Sum_probs=101.9
Q ss_pred CcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCC
Q 005502 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS 438 (693)
Q Consensus 359 ~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp 438 (693)
....+..+|.+||.+|..++ |.+||++|++||+.+|+. +++|+||||||... ||+...+.||.+||+|+|
T Consensus 111 ~~k~A~~lK~~GN~~f~~kk-Y~eAIkyY~~AI~l~p~e------piFYsNraAcY~~l---gd~~~Vied~TkALEl~P 180 (606)
T KOG0547|consen 111 RLKYAAALKTKGNKFFRNKK-YDEAIKYYTQAIELCPDE------PIFYSNRAACYESL---GDWEKVIEDCTKALELNP 180 (606)
T ss_pred HHHHHHHHHhhhhhhhhccc-HHHHHHHHHHHHhcCCCC------chhhhhHHHHHHHH---hhHHHHHHHHHHHhhcCc
Confidence 46678899999999999999 999999999999999987 89999999999995 669999999999999999
Q ss_pred CCcchhhhHHHHHHHhccHHHHHHHHHHHcccCC-CCchhHHHHHHHHHHH
Q 005502 439 SSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDP-SNSVMAEKVENIKKHI 488 (693)
Q Consensus 439 ~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p-~~~~~~~~~~~l~~~i 488 (693)
+++|||+|||.|+++||++.||+.|+....-++- .|..+-..++++-++.
T Consensus 181 ~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~ 231 (606)
T KOG0547|consen 181 DYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQ 231 (606)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHH
Confidence 9999999999999999999999999976543332 2233334455544443
No 148
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.6e-16 Score=163.74 Aligned_cols=223 Identities=18% Similarity=0.224 Sum_probs=163.3
Q ss_pred cccccchhhhccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECC---------CCcEEEEeccCCCcceEE
Q 005502 28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS---------SRKLLHSIETGHSANVFC 98 (693)
Q Consensus 28 ~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~---------~~~~~~~l~~~h~~~I~s 98 (693)
..+.+| .+.++.++..+.+|-..|+||.|+.||.+|+|||.||.|.+|.+. +-++++.+ ..|+-+|++
T Consensus 103 g~lYlW--elssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f-~~HtlsITD 179 (476)
T KOG0646|consen 103 GNLYLW--ELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIF-SDHTLSITD 179 (476)
T ss_pred CcEEEE--EeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeee-ccCcceeEE
Confidence 444444 577888899999999999999999999999999999999999864 23566777 799999999
Q ss_pred EEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 005502 99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR 178 (693)
Q Consensus 99 l~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr 178 (693)
+...+.+....|+|++.|.++++||+..+ ..+.++. ....++++++.| ....+..|+++|.|.+.++.
T Consensus 180 l~ig~Gg~~~rl~TaS~D~t~k~wdlS~g----------~LLlti~-fp~si~av~lDp-ae~~~yiGt~~G~I~~~~~~ 247 (476)
T KOG0646|consen 180 LQIGSGGTNARLYTASEDRTIKLWDLSLG----------VLLLTIT-FPSSIKAVALDP-AERVVYIGTEEGKIFQNLLF 247 (476)
T ss_pred EEecCCCccceEEEecCCceEEEEEeccc----------eeeEEEe-cCCcceeEEEcc-cccEEEecCCcceEEeeehh
Confidence 99987744679999999999999999965 3344443 467899999999 66788899999999999886
Q ss_pred CCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCcc--ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCccccc
Q 005502 179 QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL--SLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK 256 (693)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~--~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~ 256 (693)
....... ......... ....+....+|.. .|+|++++-+ +.+|++|+.||.|.|||+.+.+.++++.
T Consensus 248 ~~~~~~~------~v~~k~~~~---~~t~~~~~~Gh~~~~~ITcLais~D-gtlLlSGd~dg~VcvWdi~S~Q~iRtl~- 316 (476)
T KOG0646|consen 248 KLSGQSA------GVNQKGRHE---ENTQINVLVGHENESAITCLAISTD-GTLLLSGDEDGKVCVWDIYSKQCIRTLQ- 316 (476)
T ss_pred cCCcccc------ccccccccc---ccceeeeeccccCCcceeEEEEecC-ccEEEeeCCCCCEEEEecchHHHHHHHh-
Confidence 5431100 000000000 0111222223444 8999999997 7899999999999999998765443321
Q ss_pred CCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEE
Q 005502 257 RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL 296 (693)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~s 296 (693)
+...+|+.+.+.|--+-.+.
T Consensus 317 --------------------~~kgpVtnL~i~~~~~~~~l 336 (476)
T KOG0646|consen 317 --------------------TSKGPVTNLQINPLERGIIL 336 (476)
T ss_pred --------------------hhccccceeEeeccccceec
Confidence 12236888888775444433
No 149
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.70 E-value=4.8e-16 Score=156.86 Aligned_cols=180 Identities=20% Similarity=0.251 Sum_probs=144.9
Q ss_pred cCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCC
Q 005502 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 169 (693)
Q Consensus 90 ~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~D 169 (693)
.||+++|..++|+|.+ ++.||+|+.|.+|.||.+.... ......+++..+.+|..+|--++|+|.-.++|+|++.|
T Consensus 78 ~GHt~~vLDi~w~Pfn-D~vIASgSeD~~v~vW~IPe~~---l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D 153 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFN-DCVIASGSEDTKVMVWQIPENG---LTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD 153 (472)
T ss_pred cCccccccccccCccC-CceeecCCCCceEEEEECCCcc---cccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence 6899999999999996 8999999999999999998532 12223478899999999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC
Q 005502 170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (693)
Q Consensus 170 g~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~ 249 (693)
.+|.+|++.++... +. . .|...|.+++|+.+ |.+|++.+.|..|||||.|.++
T Consensus 154 n~v~iWnv~tgeal--------------i~-----------l-~hpd~i~S~sfn~d-Gs~l~TtckDKkvRv~dpr~~~ 206 (472)
T KOG0303|consen 154 NTVSIWNVGTGEAL--------------IT-----------L-DHPDMVYSMSFNRD-GSLLCTTCKDKKVRVIDPRRGT 206 (472)
T ss_pred ceEEEEeccCCcee--------------ee-----------c-CCCCeEEEEEeccC-CceeeeecccceeEEEcCCCCc
Confidence 99999999988632 11 1 26778999999997 7899999999999999999886
Q ss_pred CCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEec---CCcEEEEECCCCCcceEEeec
Q 005502 250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS---GEHVYLMDVNHAGGRAMRYTV 320 (693)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~---Dg~V~lwDl~~~~~~~~~~~~ 320 (693)
.+..- .+|.+..-..+.|-.+|..+-+|-+ +.++-|||-.+.+.+......
T Consensus 207 ~v~e~--------------------~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~el 260 (472)
T KOG0303|consen 207 VVSEG--------------------VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQEL 260 (472)
T ss_pred Eeeec--------------------ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEe
Confidence 55321 2344444567889899995555543 789999999987766554443
No 150
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.70 E-value=3.2e-16 Score=160.88 Aligned_cols=196 Identities=21% Similarity=0.293 Sum_probs=145.6
Q ss_pred cCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCC
Q 005502 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 169 (693)
Q Consensus 90 ~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~D 169 (693)
..+.+.|++++|+|..+-.++++|..-|.|-+||+..... ....+..+..|+.+|.+|.|+|.+...|.+.|.|
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~------d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD 256 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK------DKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD 256 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC------ccCceEEeccCCccccceEecCCChhheeeeccC
Confidence 4688999999999997447999999999999999963211 1245778889999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCCCC---------------------CCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCC
Q 005502 170 GTLRQHDFRQGSSCPPA---------------------GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRP 228 (693)
Q Consensus 170 g~V~iwDlr~~~~~~~~---------------------~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~ 228 (693)
|+|++-|+.....-... ..+..-+.-.+++++++.. .+.....|...|.+++++|..+
T Consensus 257 GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s-~~~~~~lh~kKI~sv~~NP~~p 335 (498)
T KOG4328|consen 257 GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGS-EYENLRLHKKKITSVALNPVCP 335 (498)
T ss_pred ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCc-cchhhhhhhcccceeecCCCCc
Confidence 99999999865321000 0000011223455655443 1223334556899999999999
Q ss_pred cEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEEC
Q 005502 229 HLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV 308 (693)
Q Consensus 229 ~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl 308 (693)
.+|||++.|++++|||+|....-.+ +.+ ..-.|.. .|.++.|||.|-.|++.+.|..|+|||.
T Consensus 336 ~~laT~s~D~T~kIWD~R~l~~K~s--------p~l--------st~~Hrr-sV~sAyFSPs~gtl~TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 336 WFLATASLDQTAKIWDLRQLRGKAS--------PFL--------STLPHRR-SVNSAYFSPSGGTLLTTCQDNEIRVFDS 398 (498)
T ss_pred hheeecccCcceeeeehhhhcCCCC--------cce--------ecccccc-eeeeeEEcCCCCceEeeccCCceEEeec
Confidence 9999999999999999997643221 011 1122433 6999999999888999999999999998
Q ss_pred C
Q 005502 309 N 309 (693)
Q Consensus 309 ~ 309 (693)
.
T Consensus 399 s 399 (498)
T KOG4328|consen 399 S 399 (498)
T ss_pred c
Confidence 4
No 151
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.70 E-value=5.8e-17 Score=176.15 Aligned_cols=279 Identities=17% Similarity=0.228 Sum_probs=188.2
Q ss_pred hhhhccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEE
Q 005502 34 SSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSG 113 (693)
Q Consensus 34 ~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sg 113 (693)
...++..+.++.|.||..+|.|..|...|.++++|++|..|+||..++..++.+. .||.+.|+.++.+.+ +.+++++
T Consensus 174 gtmvqkmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~-rGhs~ditdlavs~~--n~~iaaa 250 (1113)
T KOG0644|consen 174 GTMVQKMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASC-RGHSGDITDLAVSSN--NTMIAAA 250 (1113)
T ss_pred HHHHHHHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccC-CCCccccchhccchh--hhhhhhc
Confidence 3477888889999999999999999999999999999999999999999999999 899999999999877 5899999
Q ss_pred eCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC-CCCCCC-CCCCCCc
Q 005502 114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR-QGSSCP-PAGSSHQ 191 (693)
Q Consensus 114 s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr-~~~~~~-~~~~~~~ 191 (693)
+.|..|++|.+... .++..+.+|++.|++|+|+| +.+.+.||++++||.| .....+ .......
T Consensus 251 S~D~vIrvWrl~~~----------~pvsvLrghtgavtaiafsP-----~~sss~dgt~~~wd~r~~~~~y~prp~~~~~ 315 (1113)
T KOG0644|consen 251 SNDKVIRVWRLPDG----------APVSVLRGHTGAVTAIAFSP-----RASSSDDGTCRIWDARLEPRIYVPRPLKFTE 315 (1113)
T ss_pred ccCceEEEEecCCC----------chHHHHhccccceeeeccCc-----cccCCCCCceEeccccccccccCCCCCCccc
Confidence 99999999999965 77999999999999999999 2388999999999998 221111 0000000
Q ss_pred -ccceEEEeccCCceeeec---CCCCCccceEEEEEcC----------CCCcEEEEEeCCCcEEEEecCCCCCCcccccC
Q 005502 192 -ECRNILLDLRCGAKRSLA---DPPKQTLSLKSCDISS----------TRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR 257 (693)
Q Consensus 192 -~~~~~l~~~~~~~~~~l~---~~~~~~~~v~sl~~sp----------~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~ 257 (693)
.....+..-..+. .... ........+-+++|.. +-..+.+++-.+..+.+|++-++..+...
T Consensus 316 ~~~~~s~~~~~~~~-~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l--- 391 (1113)
T KOG0644|consen 316 KDLVDSILFENNGD-RFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNL--- 391 (1113)
T ss_pred ccceeeeecccccc-ccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhh---
Confidence 0000000000000 0000 0000011111222222 21234444555666777777665432211
Q ss_pred CCCCCcccccccCccccCCCCccceEEEEEcCCCCEE-EEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCcc
Q 005502 258 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEV-LLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGL 336 (693)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L-~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~g~ 336 (693)
.+|.. .+..+.++|-...+ .+++.||...|||+-.+-.....+......-..+|+++...+
T Consensus 392 -----------------~ghsd-~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~ 453 (1113)
T KOG0644|consen 392 -----------------MGHSD-EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSI 453 (1113)
T ss_pred -----------------ccccc-ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceE
Confidence 23444 47889999976655 577789999999999876555544333344456688887777
Q ss_pred cccCCccccccccccc
Q 005502 337 ELQPPIHDFLQTNIRV 352 (693)
Q Consensus 337 ~~~~~~~~~~~~~~~~ 352 (693)
......++....|+..
T Consensus 454 ~lsd~hgql~i~g~gq 469 (1113)
T KOG0644|consen 454 ALSDDHGQLYILGTGQ 469 (1113)
T ss_pred ecCCCCCceEEeccCC
Confidence 6666666665554433
No 152
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.70 E-value=3.4e-16 Score=167.51 Aligned_cols=228 Identities=19% Similarity=0.281 Sum_probs=174.9
Q ss_pred cccccchhhhccccceEEeccCCCcEEEEEECC---CCCEEEEEeCCCcEEEEECCCCc-EEEEeccCCCcceEEEEEee
Q 005502 28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNS---KGSLLISGSDDTHINVWSYSSRK-LLHSIETGHSANVFCTKFVP 103 (693)
Q Consensus 28 ~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~---~g~~LaSgs~Dg~I~IWd~~~~~-~~~~l~~~h~~~I~sl~f~p 103 (693)
.++++++ .+.+...-.++.|...|.||.|+. ..++||+++.|+.|.|||+...- ++.++ .+|...|++|+|.-
T Consensus 481 GnlrVy~--Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtl-d~HSssITsvKFa~ 557 (1080)
T KOG1408|consen 481 GNLRVYD--LQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTL-DGHSSSITSVKFAC 557 (1080)
T ss_pred CceEEEE--ehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhh-cccccceeEEEEee
Confidence 4555554 445555666789999999999996 35799999999999999997653 55666 79999999999998
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCC--CCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCC
Q 005502 104 ETSDELVVSGAGDAEVRLFNLSRFS--GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS 181 (693)
Q Consensus 104 ~~~~~~l~sgs~Dg~V~vwdl~~~~--~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~ 181 (693)
......+++++.|..|. |+..... ++. -+..+-......++.+++.| ...++++++.|..|+|||+..++
T Consensus 558 ~gln~~MiscGADksim-Fr~~qk~~~g~~------f~r~t~t~~ktTlYDm~Vdp-~~k~v~t~cQDrnirif~i~sgK 629 (1080)
T KOG1408|consen 558 NGLNRKMISCGADKSIM-FRVNQKASSGRL------FPRHTQTLSKTTLYDMAVDP-TSKLVVTVCQDRNIRIFDIESGK 629 (1080)
T ss_pred cCCceEEEeccCchhhh-eehhccccCcee------ccccccccccceEEEeeeCC-CcceEEEEecccceEEEeccccc
Confidence 85447899999998876 4444321 111 11111112245789999999 66889999999999999999886
Q ss_pred CCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCC
Q 005502 182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP 261 (693)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~ 261 (693)
.. +.+.....+......+...|. +.+||+.+.|.++.+||.-+++
T Consensus 630 q~----------------------k~FKgs~~~eG~lIKv~lDPS-giY~atScsdktl~~~Df~sgE------------ 674 (1080)
T KOG1408|consen 630 QV----------------------KSFKGSRDHEGDLIKVILDPS-GIYLATSCSDKTLCFVDFVSGE------------ 674 (1080)
T ss_pred ee----------------------eeecccccCCCceEEEEECCC-ccEEEEeecCCceEEEEeccch------------
Confidence 33 122333455566778889997 7999999999999999998874
Q ss_pred CcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCC
Q 005502 262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 262 ~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~ 310 (693)
|+..+ .||.. .||.+.|.+|-++|++.++||.|.+|.+..
T Consensus 675 -cvA~m-------~GHsE-~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 675 -CVAQM-------TGHSE-AVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred -hhhhh-------cCcch-heeeeeecccchhheeecCCceEEEEECch
Confidence 44443 45655 599999999999999999999999999876
No 153
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.69 E-value=5.9e-15 Score=154.06 Aligned_cols=262 Identities=14% Similarity=0.144 Sum_probs=161.9
Q ss_pred cccccchhhhccccceEEeccCCCcEEEEEECCCCCEE-EEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCC
Q 005502 28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS 106 (693)
Q Consensus 28 ~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~L-aSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~ 106 (693)
..+.+|+. ...++...+.+|.. +.++.|+|+|..+ ++++.++.|++||+.+++.+..+. .+. .+..+.|+|+
T Consensus 11 ~~v~~~d~--~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~-~~~~~~~~~~-- 83 (300)
T TIGR03866 11 NTISVIDT--ATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP-SGP-DPELFALHPN-- 83 (300)
T ss_pred CEEEEEEC--CCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc-CCC-CccEEEECCC--
Confidence 45555542 34556777776654 6789999999876 677789999999999988877773 333 3567899998
Q ss_pred CCEE-EEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCC-cEEEEeCCCCCCCC
Q 005502 107 DELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-TLRQHDFRQGSSCP 184 (693)
Q Consensus 107 ~~~l-~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg-~V~iwDlr~~~~~~ 184 (693)
++.+ ++++.|+.|++||+... ..+..+. +...+..++|+| ++.++++++.++ .+.+||.++.....
T Consensus 84 g~~l~~~~~~~~~l~~~d~~~~----------~~~~~~~-~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~ 151 (300)
T TIGR03866 84 GKILYIANEDDNLVTVIDIETR----------KVLAEIP-VGVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVD 151 (300)
T ss_pred CCEEEEEcCCCCeEEEEECCCC----------eEEeEee-CCCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEE
Confidence 4555 55567899999999853 2233333 223467788888 556776776654 46667876543210
Q ss_pred CC-------------------CCCCcccceEEEeccCCceeeecCCC-----CCccceEEEEEcCCCCcEEEEEeCCCcE
Q 005502 185 PA-------------------GSSHQECRNILLDLRCGAKRSLADPP-----KQTLSLKSCDISSTRPHLLLVGGSDAFA 240 (693)
Q Consensus 185 ~~-------------------~~~~~~~~~~l~~~~~~~~~~l~~~~-----~~~~~v~sl~~sp~~~~~Latgs~Dg~I 240 (693)
.. ..........+|++.++......... ........++|+|++...+++.+.++.|
T Consensus 152 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i 231 (300)
T TIGR03866 152 NVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRV 231 (300)
T ss_pred EEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeE
Confidence 00 00001122334555444321111100 0112335688999854334555667789
Q ss_pred EEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEe-cCCcEEEEECCCCCcceEEee
Q 005502 241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHAGGRAMRYT 319 (693)
Q Consensus 241 ~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs-~Dg~V~lwDl~~~~~~~~~~~ 319 (693)
.+||+++.+..... . .+ ..+.+++|+|+|++|+++. .++.|.+||+.+++....+ .
T Consensus 232 ~v~d~~~~~~~~~~-------------~------~~---~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~-~ 288 (300)
T TIGR03866 232 AVVDAKTYEVLDYL-------------L------VG---QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI-K 288 (300)
T ss_pred EEEECCCCcEEEEE-------------E------eC---CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE-E
Confidence 99999865432111 0 01 1478999999999998875 5899999999996643333 3
Q ss_pred cCCCceeEEecc
Q 005502 320 VGDASKIMSFTP 331 (693)
Q Consensus 320 ~~~~~~~~~~~p 331 (693)
.+..+..++++|
T Consensus 289 ~~~~~~~~~~~~ 300 (300)
T TIGR03866 289 VGRLPWGVVVRP 300 (300)
T ss_pred cccccceeEeCC
Confidence 344555555543
No 154
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.69 E-value=3.5e-16 Score=153.89 Aligned_cols=200 Identities=22% Similarity=0.274 Sum_probs=143.7
Q ss_pred CcchhhhhcccccCCCCCcCcccccchhhhccccceEEeccCCCcEEEEEECCCCC--EEEEEeCCCcEEEEECCCCcEE
Q 005502 8 DGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGS--LLISGSDDTHINVWSYSSRKLL 85 (693)
Q Consensus 8 ~~~~~~~l~~r~~~~~~~~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~--~LaSgs~Dg~I~IWd~~~~~~~ 85 (693)
.+.++.+--.+.+--+...+.++++++ .++-.....|-.|.+.|++|.|.+.-. .|++|++||.|.+|+.....++
T Consensus 43 ~~sitavAVs~~~~aSGssDetI~IYD--m~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~ 120 (362)
T KOG0294|consen 43 AGSITALAVSGPYVASGSSDETIHIYD--MRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELL 120 (362)
T ss_pred ccceeEEEecceeEeccCCCCcEEEEe--ccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEe
Confidence 455555555555544556677788876 344556677788999999999999764 8999999999999999999999
Q ss_pred EEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEec--------
Q 005502 86 HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV-------- 157 (693)
Q Consensus 86 ~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-------- 157 (693)
.++ .+|.+.|+.++.+|. +.+-++.+.|+.+++||+-++..-. +..+ ....+.+.|+|
T Consensus 121 ~sl-K~H~~~Vt~lsiHPS--~KLALsVg~D~~lr~WNLV~Gr~a~--------v~~L---~~~at~v~w~~~Gd~F~v~ 186 (362)
T KOG0294|consen 121 KSL-KAHKGQVTDLSIHPS--GKLALSVGGDQVLRTWNLVRGRVAF--------VLNL---KNKATLVSWSPQGDHFVVS 186 (362)
T ss_pred eee-cccccccceeEecCC--CceEEEEcCCceeeeehhhcCccce--------eecc---CCcceeeEEcCCCCEEEEE
Confidence 999 799999999999999 6899999999999999998643211 1111 11111233433
Q ss_pred ------------------------------CCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceee
Q 005502 158 ------------------------------GNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (693)
Q Consensus 158 ------------------------------~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 207 (693)
.++..+++|+.|+.|++||..... .
T Consensus 187 ~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~-------------------------~ 241 (362)
T KOG0294|consen 187 GRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDT-------------------------P 241 (362)
T ss_pred eccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCc-------------------------c
Confidence 233455556666666666654422 2
Q ss_pred ecCCCCCccceEEEEE--cCCCCcEEEEEeCCCcEEEEecCCCC
Q 005502 208 LADPPKQTLSLKSCDI--SSTRPHLLLVGGSDAFARLYDRRMLP 249 (693)
Q Consensus 208 l~~~~~~~~~v~sl~~--sp~~~~~Latgs~Dg~I~lwD~r~~~ 249 (693)
+.....|...|..+.+ +|. +.+|+++++||.|+|||+++..
T Consensus 242 ~~~~~AH~~RVK~i~~~~~~~-~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 242 LTEFLAHENRVKDIASYTNPE-HEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred ceeeecchhheeeeEEEecCC-ceEEEEeccCceEEEEEccccc
Confidence 3344467778888874 454 6899999999999999999753
No 155
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.69 E-value=2.2e-16 Score=155.98 Aligned_cols=240 Identities=17% Similarity=0.250 Sum_probs=166.5
Q ss_pred ccccceEEeccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEECCCCcEEEEec--cCCCcceEEEEEeeCCCCCEEEEEe
Q 005502 38 RRLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSIE--TGHSANVFCTKFVPETSDELVVSGA 114 (693)
Q Consensus 38 ~~l~~~~~l~gH~~~V~~l~~s~~-g~~LaSgs~Dg~I~IWd~~~~~~~~~l~--~~h~~~I~sl~f~p~~~~~~l~sgs 114 (693)
.+.++...+.||.+.|+.|.+.|. .++|+++|.|..|++|++.++.++..+- .+|.+.|.++.|+++ +.+|++|+
T Consensus 123 ~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~--gd~i~ScG 200 (385)
T KOG1034|consen 123 VSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLD--GDRIASCG 200 (385)
T ss_pred chhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCC--CCeeeccC
Confidence 344566778899999999999996 5799999999999999999999998872 479999999999999 68999999
Q ss_pred CCCcEEEEEcCCCCC--CCC------CCCCC---------CCc-eeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 005502 115 GDAEVRLFNLSRFSG--RGL------DDNAI---------TPS-ALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD 176 (693)
Q Consensus 115 ~Dg~V~vwdl~~~~~--~~~------~~~~~---------~~~-~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwD 176 (693)
.|.++++|++....- ... ..... -|. .+-.-|...|-|+.|- +++++|-|.++.|..|.
T Consensus 201 mDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~---gd~ilSkscenaI~~w~ 277 (385)
T KOG1034|consen 201 MDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF---GDFILSKSCENAIVCWK 277 (385)
T ss_pred CcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH---hhheeecccCceEEEEe
Confidence 999999999983210 000 00000 011 1223478888888885 37888999999999998
Q ss_pred CCC-CCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccc
Q 005502 177 FRQ-GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ 255 (693)
Q Consensus 177 lr~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~ 255 (693)
.-. .+........ ..+..++-. ...+.-.......+|+|. ..+||.|...|.|++||++...+.
T Consensus 278 pgkl~e~~~~vkp~-es~~Ti~~~---------~~~~~c~iWfirf~~d~~-~~~la~gnq~g~v~vwdL~~~ep~---- 342 (385)
T KOG1034|consen 278 PGKLEESIHNVKPP-ESATTILGE---------FDYPMCDIWFIRFAFDPW-QKMLALGNQSGKVYVWDLDNNEPP---- 342 (385)
T ss_pred cchhhhhhhccCCC-ccceeeeeE---------eccCccceEEEEEeecHH-HHHHhhccCCCcEEEEECCCCCCc----
Confidence 732 2211100000 001111110 111111223345567786 689999999999999999976542
Q ss_pred cCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCC
Q 005502 256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~ 310 (693)
.|.+. . +...+..|...+|+.||..|+..+.|++|.-||-.+
T Consensus 343 ------~~ttl-----~--~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv~ 384 (385)
T KOG1034|consen 343 ------KCTTL-----T--HSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRVS 384 (385)
T ss_pred ------cCceE-----E--eccccceeeeeeecccCcEEEEEeCCCcEEEEEeec
Confidence 11111 1 112333699999999999999999999999998643
No 156
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.69 E-value=5.8e-15 Score=153.09 Aligned_cols=235 Identities=17% Similarity=0.255 Sum_probs=173.4
Q ss_pred EeccCC-CcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 005502 45 ELEGHQ-GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 123 (693)
Q Consensus 45 ~l~gH~-~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwd 123 (693)
.++++. .-|.|++|.++|. ++||..+|.|.||+..+.+..+... .|.+.|++++...+ | .|++|+.|..|..||
T Consensus 240 ~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~--G-tllSGgKDRki~~Wd 314 (626)
T KOG2106|consen 240 IFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRD--G-TLLSGGKDRKIILWD 314 (626)
T ss_pred ccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecC--c-cEeecCccceEEecc
Confidence 445543 6799999999997 6799999999999998888877774 99999999999987 3 667799999999999
Q ss_pred cCCCCCCCC------------------------------CCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEE
Q 005502 124 LSRFSGRGL------------------------------DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR 173 (693)
Q Consensus 124 l~~~~~~~~------------------------------~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~ 173 (693)
-.-...+.. ............+|......++.+| +.++|+|++.|+.|+
T Consensus 315 ~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~ 393 (626)
T KOG2106|consen 315 DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVR 393 (626)
T ss_pred ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceEE
Confidence 432111110 0000111234457888899999999 667888999999999
Q ss_pred EEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcc
Q 005502 174 QHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS 253 (693)
Q Consensus 174 iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~ 253 (693)
+|+ .+ ..+|... -..++.|+.|+|. + .+|+|...|...+.|..+...+.
T Consensus 394 lW~---~~-------------k~~wt~~------------~~d~~~~~~fhps-g-~va~Gt~~G~w~V~d~e~~~lv~- 442 (626)
T KOG2106|consen 394 LWN---DH-------------KLEWTKI------------IEDPAECADFHPS-G-VVAVGTATGRWFVLDTETQDLVT- 442 (626)
T ss_pred Ecc---CC-------------ceeEEEE------------ecCceeEeeccCc-c-eEEEeeccceEEEEecccceeEE-
Confidence 999 22 1233211 1246789999997 4 99999999999999998732211
Q ss_pred cccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEe--ecCCCceeEEecc
Q 005502 254 CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRY--TVGDASKIMSFTP 331 (693)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~--~~~~~~~~~~~~p 331 (693)
+ +.. +.+++.++|+|+|.+|++|+.|+.||||.+...+...... .++.++..+.|++
T Consensus 443 ~--------------------~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~ 501 (626)
T KOG2106|consen 443 I--------------------HTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSS 501 (626)
T ss_pred E--------------------Eec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecC
Confidence 1 111 3369999999999999999999999999998866544433 3345666777887
Q ss_pred CCCccc
Q 005502 332 TLNGLE 337 (693)
Q Consensus 332 ~~~g~~ 337 (693)
+.+-+.
T Consensus 502 Ds~~~~ 507 (626)
T KOG2106|consen 502 DSQFLV 507 (626)
T ss_pred CCceEE
Confidence 765443
No 157
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=2e-15 Score=159.33 Aligned_cols=250 Identities=15% Similarity=0.200 Sum_probs=174.1
Q ss_pred ceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 005502 42 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 121 (693)
Q Consensus 42 ~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~v 121 (693)
+...++||++.|.||+..|.|.+||+|++||+|+||.+.++.|+.++ ...+.|.||+|+|.++-.+||++ ....+.|
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~--~~d~~I~~vaw~P~~~~~vLAvA-~~~~~~i 468 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV--QFDSEIRSVAWNPLSDLCVLAVA-VGECVLI 468 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE--eecceeEEEEecCCCCceeEEEE-ecCceEE
Confidence 34567999999999999999999999999999999999999999988 35678999999999743444444 4445666
Q ss_pred EEcCCCCC-------CCCCCC--------------------CCCCceeeccCCCCeEEEEEecCCCcEEEEEeCC---Cc
Q 005502 122 FNLSRFSG-------RGLDDN--------------------AITPSALYQCHTRRVKKLAVEVGNPHVVWSASED---GT 171 (693)
Q Consensus 122 wdl~~~~~-------~~~~~~--------------------~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~D---g~ 171 (693)
-+..-+.. ..+... ...-+...-.|...|+.|.||- .+.+|++...+ ..
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-kGDYlatV~~~~~~~~ 547 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-KGDYLATVMPDSGNKS 547 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-CCceEEEeccCCCcce
Confidence 65442210 000000 0011234445889999999998 67888887664 46
Q ss_pred EEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCC
Q 005502 172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL 251 (693)
Q Consensus 172 V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~ 251 (693)
|.|+++...... ..+......+.++.|+|..+ +|++++ ...|||||+-....+
T Consensus 548 VliHQLSK~~sQ-------------------------~PF~kskG~vq~v~FHPs~p-~lfVaT-q~~vRiYdL~kqelv 600 (733)
T KOG0650|consen 548 VLIHQLSKRKSQ-------------------------SPFRKSKGLVQRVKFHPSKP-YLFVAT-QRSVRIYDLSKQELV 600 (733)
T ss_pred EEEEeccccccc-------------------------CchhhcCCceeEEEecCCCc-eEEEEe-ccceEEEehhHHHHH
Confidence 888888654421 11112345688999999865 444443 468999999764333
Q ss_pred cccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcce-EEeecCCCceeEEec
Q 005502 252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRA-MRYTVGDASKIMSFT 330 (693)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~-~~~~~~~~~~~~~~~ 330 (693)
..+. + ...+|.+++++|.|..|++|+.|+.+..||+.-+..+- .+-.+....+.++|+
T Consensus 601 KkL~-------------t--------g~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H 659 (733)
T KOG0650|consen 601 KKLL-------------T--------GSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFH 659 (733)
T ss_pred HHHh-------------c--------CCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhc
Confidence 2221 0 11269999999999999999999999999998765442 233455677788888
Q ss_pred cCCCcccccCCcc
Q 005502 331 PTLNGLELQPPIH 343 (693)
Q Consensus 331 p~~~g~~~~~~~~ 343 (693)
+..+-.+.....+
T Consensus 660 ~ryPLfas~sdDg 672 (733)
T KOG0650|consen 660 KRYPLFASGSDDG 672 (733)
T ss_pred cccceeeeecCCC
Confidence 8766655444433
No 158
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.68 E-value=1.9e-15 Score=162.06 Aligned_cols=286 Identities=21% Similarity=0.281 Sum_probs=192.8
Q ss_pred cCcccccchhhhccccceEEeccCCCcEEEEEECCCCC---EEEEEeCCCcEEEEECCCCc-------------------
Q 005502 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGS---LLISGSDDTHINVWSYSSRK------------------- 83 (693)
Q Consensus 26 ~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~---~LaSgs~Dg~I~IWd~~~~~------------------- 83 (693)
....+.++....++++...+|+||++-|.+|+|...+. +|||+|.|..|+||.+.-+.
T Consensus 167 s~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~ 246 (764)
T KOG1063|consen 167 SKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPV 246 (764)
T ss_pred cceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCce
Confidence 34556666666788899999999999999999998544 89999999999999764211
Q ss_pred -----EEE------EeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCC---------------------
Q 005502 84 -----LLH------SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG--------------------- 131 (693)
Q Consensus 84 -----~~~------~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~--------------------- 131 (693)
.+. .+..||.+.|.++.|+|. +..|++++.|.++.+|.....++.=
T Consensus 247 f~~l~~i~~~is~eall~GHeDWV~sv~W~p~--~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw 324 (764)
T KOG1063|consen 247 FMILEEIQYRISFEALLMGHEDWVYSVWWHPE--GLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLW 324 (764)
T ss_pred eeeeeeEEEEEehhhhhcCcccceEEEEEccc--hhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEE
Confidence 111 223599999999999999 5789999999999999877542210
Q ss_pred ------------------C---CCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCC----C--C
Q 005502 132 ------------------L---DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS----C--P 184 (693)
Q Consensus 132 ------------------~---~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~----~--~ 184 (693)
. +...+.....+.+|...|++|+|+| .+.+|+|+|.|.+-|+|---..+. . |
T Consensus 325 ~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~q~~wHEiaRP 403 (764)
T KOG1063|consen 325 SPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGRQQEWHEIARP 403 (764)
T ss_pred cCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecC-CCCEEEEeccccceeeecccccccceeeeccc
Confidence 0 0111223345678999999999999 667888999999998875431100 0 1
Q ss_pred CCCCCCcccc----------------------------------------------------------eEEE--eccCCc
Q 005502 185 PAGSSHQECR----------------------------------------------------------NILL--DLRCGA 204 (693)
Q Consensus 185 ~~~~~~~~~~----------------------------------------------------------~~l~--~~~~~~ 204 (693)
++......|. ..++ ...+|.
T Consensus 404 QiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~ 483 (764)
T KOG1063|consen 404 QIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGG 483 (764)
T ss_pred ccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccccc
Confidence 1100000000 0000 000011
Q ss_pred e-------------eeecC------------------CCCCccceEEEEEcCCCCcEEEEEeCC-----CcEEEEecCCC
Q 005502 205 K-------------RSLAD------------------PPKQTLSLKSCDISSTRPHLLLVGGSD-----AFARLYDRRML 248 (693)
Q Consensus 205 ~-------------~~l~~------------------~~~~~~~v~sl~~sp~~~~~Latgs~D-----g~I~lwD~r~~ 248 (693)
. ..+.. ..+|...|++++.+|+ ++++|+++.. ..|++|+..+.
T Consensus 484 ~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~-gnliASaCKS~~~ehAvI~lw~t~~W 562 (764)
T KOG1063|consen 484 EAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPT-GNLIASACKSSLKEHAVIRLWNTANW 562 (764)
T ss_pred ccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCC-CCEEeehhhhCCccceEEEEEeccch
Confidence 0 00111 1257789999999997 7899999864 56999999876
Q ss_pred CCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEe----ecCCCc
Q 005502 249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRY----TVGDAS 324 (693)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~----~~~~~~ 324 (693)
.....+ .+|. ..|+.++|||||++|++.+.|.++.||...........+ .|...+
T Consensus 563 ~~~~~L--------------------~~Hs-LTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRII 621 (764)
T KOG1063|consen 563 LQVQEL--------------------EGHS-LTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRII 621 (764)
T ss_pred hhhhee--------------------cccc-eEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEE
Confidence 533221 2343 369999999999999999999999999987654433332 233344
Q ss_pred eeEEeccCCCcc
Q 005502 325 KIMSFTPTLNGL 336 (693)
Q Consensus 325 ~~~~~~p~~~g~ 336 (693)
-...|+|+..+.
T Consensus 622 WdcsW~pde~~F 633 (764)
T KOG1063|consen 622 WDCSWSPDEKYF 633 (764)
T ss_pred EEcccCccccee
Confidence 455688877663
No 159
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.68 E-value=1.3e-15 Score=157.41 Aligned_cols=207 Identities=18% Similarity=0.215 Sum_probs=164.9
Q ss_pred cCcccccchhhhccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCC
Q 005502 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105 (693)
Q Consensus 26 ~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~ 105 (693)
..+.+++|+.. +-.+.+.|++|+..|+++.++....+||+++..|.|.|..+.++.....+..+....|.-+.|+|..
T Consensus 99 ~~~~Vkiwdl~--~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~sk 176 (673)
T KOG4378|consen 99 QSGCVKIWDLR--AKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSK 176 (673)
T ss_pred cCceeeehhhH--HHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeeccccc
Confidence 34677788754 3345678899999999999999999999999999999999999888888854445667789999985
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCC
Q 005502 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP 185 (693)
Q Consensus 106 ~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~ 185 (693)
-.+|.+++.+|.|.+||+...+ +.......|+.+...|+|+|.++.+|++.+.|..|.+||++......
T Consensus 177 -r~lL~~asd~G~VtlwDv~g~s---------p~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~- 245 (673)
T KOG4378|consen 177 -RFLLSIASDKGAVTLWDVQGMS---------PIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD- 245 (673)
T ss_pred -ceeeEeeccCCeEEEEeccCCC---------cccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccc-
Confidence 5788999999999999998642 22344567999999999999999999999999999999998654321
Q ss_pred CCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCccc
Q 005502 186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN 265 (693)
Q Consensus 186 ~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~ 265 (693)
.+ ....+...++|.++ |.+|++|...|.|..||+|+.+. .+.
T Consensus 246 ----------~l---------------~y~~Plstvaf~~~-G~~L~aG~s~G~~i~YD~R~~k~------------Pv~ 287 (673)
T KOG4378|consen 246 ----------RL---------------TYSHPLSTVAFSEC-GTYLCAGNSKGELIAYDMRSTKA------------PVA 287 (673)
T ss_pred ----------ee---------------eecCCcceeeecCC-ceEEEeecCCceEEEEecccCCC------------Cce
Confidence 01 11346789999997 79999999999999999997642 122
Q ss_pred ccccCccccCCCCccceEEEEEcCCC
Q 005502 266 YFCPMHLSEHGRSSLHLTHVTFSPNG 291 (693)
Q Consensus 266 ~~~~~~~~~~~h~~~~V~~v~fspdg 291 (693)
.. ..|.. .|++|+|-|.-
T Consensus 288 v~-------sah~~-sVt~vafq~s~ 305 (673)
T KOG4378|consen 288 VR-------SAHDA-SVTRVAFQPSP 305 (673)
T ss_pred Ee-------eeccc-ceeEEEeeecc
Confidence 22 33444 49999998875
No 160
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.67 E-value=1.6e-15 Score=165.71 Aligned_cols=199 Identities=15% Similarity=0.151 Sum_probs=164.0
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEe--ccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCC
Q 005502 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI--ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 127 (693)
Q Consensus 50 ~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l--~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~ 127 (693)
...+++++.++.|++.+.|...|+|-+|++.+|-....+ ...|.++|++++.... ++.+++++.+|.+.+||+...
T Consensus 448 ~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~--n~~~vsa~~~Gilkfw~f~~k 525 (910)
T KOG1539|consen 448 DINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGT--NRLLVSAGADGILKFWDFKKK 525 (910)
T ss_pred CcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCC--CceEEEccCcceEEEEecCCc
Confidence 367999999999999999999999999999999888877 2579999999999877 689999999999999999964
Q ss_pred CCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceee
Q 005502 128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (693)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 207 (693)
.++..+. -...++.+..+. ...+++.+..|-.|+++|+.+.+.
T Consensus 526 ----------~l~~~l~-l~~~~~~iv~hr-~s~l~a~~~ddf~I~vvD~~t~kv------------------------- 568 (910)
T KOG1539|consen 526 ----------VLKKSLR-LGSSITGIVYHR-VSDLLAIALDDFSIRVVDVVTRKV------------------------- 568 (910)
T ss_pred ----------ceeeeec-cCCCcceeeeee-hhhhhhhhcCceeEEEEEchhhhh-------------------------
Confidence 2233333 345677777776 567888999999999999887542
Q ss_pred ecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEE
Q 005502 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 287 (693)
Q Consensus 208 l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~f 287 (693)
+....+|...|+.++|||+ +++|++++.|++||+||+.++..+..+ +-..+.+++.|
T Consensus 569 vR~f~gh~nritd~~FS~D-grWlisasmD~tIr~wDlpt~~lID~~----------------------~vd~~~~sls~ 625 (910)
T KOG1539|consen 569 VREFWGHGNRITDMTFSPD-GRWLISASMDSTIRTWDLPTGTLIDGL----------------------LVDSPCTSLSF 625 (910)
T ss_pred hHHhhccccceeeeEeCCC-CcEEEEeecCCcEEEEeccCcceeeeE----------------------ecCCcceeeEE
Confidence 2233467889999999998 899999999999999999987544322 12236899999
Q ss_pred cCCCCEEEEEecC-CcEEEEECCC
Q 005502 288 SPNGEEVLLSYSG-EHVYLMDVNH 310 (693)
Q Consensus 288 spdg~~L~sgs~D-g~V~lwDl~~ 310 (693)
||+|.+|++...| .-||+|--.+
T Consensus 626 SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 626 SPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred CCCCCEEEEEEecCceEEEEEchh
Confidence 9999999999998 7899997554
No 161
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.66 E-value=1.3e-15 Score=154.60 Aligned_cols=278 Identities=17% Similarity=0.238 Sum_probs=176.1
Q ss_pred cCcchhhhhcccccCCCCCcCcccccchhhhccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECC------
Q 005502 7 HDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS------ 80 (693)
Q Consensus 7 ~~~~~~~~l~~r~~~~~~~~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~------ 80 (693)
++++.+.-++.|.+....+-... -.++....|..|+..||++.|+|+|.+||||+++|.|.+|-..
T Consensus 30 aT~G~D~~iriW~v~r~~~~~~~--------~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~ 101 (434)
T KOG1009|consen 30 ATAGGDKDIRIWKVNRSEPGGGD--------MKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFD 101 (434)
T ss_pred ecccCccceeeeeeeecCCCCCc--------eeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCcc
Confidence 34444555555555443222211 2345567889999999999999999999999999999999765
Q ss_pred --C-----C--cEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeE
Q 005502 81 --S-----R--KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVK 151 (693)
Q Consensus 81 --~-----~--~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~ 151 (693)
+ . -.+.....+|...|..++|.|+ +.++++|+.|.++++||+..+ .....+..|...|.
T Consensus 102 ~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d--~~~l~s~s~dns~~l~Dv~~G----------~l~~~~~dh~~yvq 169 (434)
T KOG1009|consen 102 ADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD--SNFLVSGSVDNSVRLWDVHAG----------QLLAILDDHEHYVQ 169 (434)
T ss_pred ccchhhhCccceEEEEEecccccchhhhhccCC--CceeeeeeccceEEEEEeccc----------eeEeeccccccccc
Confidence 2 1 1233333689999999999999 699999999999999999975 55788889999999
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceE--EEeccCCceeeecCCCCCccceEEEEEcCCCCc
Q 005502 152 KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI--LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPH 229 (693)
Q Consensus 152 ~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~ 229 (693)
.++|.| -.+++++-+.|...+.+.+.......... .+... ......+....+..-..-......++|+|+ +.
T Consensus 170 gvawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~----~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPd-G~ 243 (434)
T KOG1009|consen 170 GVAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRHG----LDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPD-GS 243 (434)
T ss_pred eeecch-hhhhhhhhccCcccceeeeeeeeeeeeee----eeEeeecccCCCCcceeeeeecCchhhhhhhcccCCC-Cc
Confidence 999999 66889999999877777765543221000 00000 000011111122221222334567899997 66
Q ss_pred EEEEEeC----CCc-----EEEEecCCCC-CCcccccCCCCCCcccccc-------------------------------
Q 005502 230 LLLVGGS----DAF-----ARLYDRRMLP-PLTSCQKRMSPPPCVNYFC------------------------------- 268 (693)
Q Consensus 230 ~Latgs~----Dg~-----I~lwD~r~~~-~~~~~~~~~~~~~~~~~~~------------------------------- 268 (693)
+|++.+. .+. .++|+....+ |...+..+..+. ..-.++
T Consensus 244 llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~-lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~s 322 (434)
T KOG1009|consen 244 LLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPA-LAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNS 322 (434)
T ss_pred EEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcce-EEEEeeeeEEEeccccccccccccccceEEEEeecce
Confidence 7776542 232 3566655433 211111111100 000000
Q ss_pred ----------cCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCC
Q 005502 269 ----------PMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 269 ----------~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~ 312 (693)
|......-|-. .||.++|+++|..|+.++.||..-+--+...+
T Consensus 323 vyvydtq~~~P~~~v~nihy~-~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 323 VYVYDTQTLEPLAVVDNIHYS-AITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred EEEeccccccceEEEeeeeee-eecceeecCCCcEEEEeccCCceEEEEEcchh
Confidence 11111112333 68999999999999999999988877777644
No 162
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=1.6e-15 Score=149.02 Aligned_cols=234 Identities=16% Similarity=0.276 Sum_probs=163.6
Q ss_pred cCcccccchhhhccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCC
Q 005502 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105 (693)
Q Consensus 26 ~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~ 105 (693)
.+.++-+|+.... ...+.|.+|..+|+||+|+++|++|+|+|.|..|.+||+..+.+++.+ ...++|+.+.|+|..
T Consensus 43 ~nG~vvI~D~~T~--~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri--rf~spv~~~q~hp~k 118 (405)
T KOG1273|consen 43 ANGRVVIYDFDTF--RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI--RFDSPVWGAQWHPRK 118 (405)
T ss_pred cCCcEEEEEcccc--chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE--EccCccceeeecccc
Confidence 4466667765443 467789999999999999999999999999999999999999888776 355666666666643
Q ss_pred ---------------------------------------------CCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCc
Q 005502 106 ---------------------------------------------SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS 140 (693)
Q Consensus 106 ---------------------------------------------~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~ 140 (693)
.|+++++|...|.+.++|..+. +++
T Consensus 119 ~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~----------e~v 188 (405)
T KOG1273|consen 119 RNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETL----------ECV 188 (405)
T ss_pred CCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchh----------eee
Confidence 1467777777777777777753 445
Q ss_pred eeeccCC-CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceE
Q 005502 141 ALYQCHT-RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLK 219 (693)
Q Consensus 141 ~~~~~h~-~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~ 219 (693)
..+.-.+ ..|+.|.++. .+..|+.-+.|..||+|+++.-..+.. .+..+....+.|+ .....-+
T Consensus 189 as~rits~~~IK~I~~s~-~g~~liiNtsDRvIR~ye~~di~~~~r--~~e~e~~~K~qDv------------VNk~~Wk 253 (405)
T KOG1273|consen 189 ASFRITSVQAIKQIIVSR-KGRFLIINTSDRVIRTYEISDIDDEGR--DGEVEPEHKLQDV------------VNKLQWK 253 (405)
T ss_pred eeeeechheeeeEEEEec-cCcEEEEecCCceEEEEehhhhcccCc--cCCcChhHHHHHH------------Hhhhhhh
Confidence 4444334 6788898887 778888999999999999874321100 0000000000000 0123567
Q ss_pred EEEEcCCCCcEEEEEe-CCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEe
Q 005502 220 SCDISSTRPHLLLVGG-SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY 298 (693)
Q Consensus 220 sl~~sp~~~~~Latgs-~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs 298 (693)
+++|+.+ +.+++.|+ .-..++||...++..++-+ +|..+.....|.|+|-...+++.
T Consensus 254 ~ccfs~d-geYv~a~s~~aHaLYIWE~~~GsLVKIL--------------------hG~kgE~l~DV~whp~rp~i~si- 311 (405)
T KOG1273|consen 254 KCCFSGD-GEYVCAGSARAHALYIWEKSIGSLVKIL--------------------HGTKGEELLDVNWHPVRPIIASI- 311 (405)
T ss_pred heeecCC-ccEEEeccccceeEEEEecCCcceeeee--------------------cCCchhheeecccccceeeeeec-
Confidence 8999997 56666554 4567999999887655433 33333357789999998877776
Q ss_pred cCCcEEEEECCC
Q 005502 299 SGEHVYLMDVNH 310 (693)
Q Consensus 299 ~Dg~V~lwDl~~ 310 (693)
..|.|++|....
T Consensus 312 ~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 312 ASGVVYIWAVVQ 323 (405)
T ss_pred cCCceEEEEeec
Confidence 789999998776
No 163
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.7e-16 Score=161.95 Aligned_cols=129 Identities=20% Similarity=0.174 Sum_probs=116.5
Q ss_pred ccCcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhcc
Q 005502 357 ATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRI 436 (693)
Q Consensus 357 ~~~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~l 436 (693)
...++.++..++.||..|++|+ |..|-++|++||...|.+ .+..+.||.|||+++++++. ..+||.||+.|+.|
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~-y~~A~E~Yteal~idP~n--~~~naklY~nra~v~~rLgr---l~eaisdc~~Al~i 316 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGN-YRKAYECYTEALNIDPSN--KKTNAKLYGNRALVNIRLGR---LREAISDCNEALKI 316 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccc-hhHHHHHHHHhhcCCccc--cchhHHHHHHhHhhhcccCC---chhhhhhhhhhhhc
Confidence 4467788999999999999999 999999999999999886 34447899999999999877 88999999999999
Q ss_pred CCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHHHHHHHHHHH
Q 005502 437 DSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAE 492 (693)
Q Consensus 437 dp~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l~~~i~~~~ 492 (693)
||.++|||.|||+|++.|+++++|.++++++.+++.+ .+....+.+.+..|++++
T Consensus 317 D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSk 371 (486)
T KOG0550|consen 317 DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSK 371 (486)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999887 677778888888777655
No 164
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=4.3e-15 Score=147.84 Aligned_cols=199 Identities=13% Similarity=0.221 Sum_probs=152.8
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCcee
Q 005502 63 SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSAL 142 (693)
Q Consensus 63 ~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~ 142 (693)
+.+|++-..|.|+|||..+++.+..+ .++...+..++|......+.+.+|+.||+|++||++.... .+...
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~f-k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e--------~a~~~ 111 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEF-KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE--------SARIS 111 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhee-cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh--------hhhee
Confidence 57889989999999999999999999 7999999999999864478999999999999999997532 33455
Q ss_pred eccCC-CCeEEEEEecCCCcEEEEEeC----CCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccc
Q 005502 143 YQCHT-RRVKKLAVEVGNPHVVWSASE----DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLS 217 (693)
Q Consensus 143 ~~~h~-~~V~~l~~sp~~~~~l~Sgs~----Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ 217 (693)
+..|. .+..+++..- ..++|++|.+ |-.|.+||+|..+... -.....|...
T Consensus 112 ~~~~~~~~f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l-----------------------~~~~eSH~DD 167 (376)
T KOG1188|consen 112 WTQQSGTPFICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLL-----------------------RQLNESHNDD 167 (376)
T ss_pred ccCCCCCcceEeeccC-cCCeEEeccccccCceEEEEEEeccccchh-----------------------hhhhhhccCc
Confidence 55555 4566666654 5678877764 6789999999876420 0112246778
Q ss_pred eEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCC-CEEEE
Q 005502 218 LKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG-EEVLL 296 (693)
Q Consensus 218 v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg-~~L~s 296 (693)
|+++.|+|.++++|++|+.||.|.|||+...... ...+..+ .....|..+.|..++ +.|.+
T Consensus 168 VT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee---------DaL~~vi---------N~~sSI~~igw~~~~ykrI~c 229 (376)
T KOG1188|consen 168 VTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE---------DALLHVI---------NHGSSIHLIGWLSKKYKRIMC 229 (376)
T ss_pred ceeEEecCCCCCeEEeecccceEEeeecCCCcch---------hhHHHhh---------cccceeeeeeeecCCcceEEE
Confidence 9999999999999999999999999999754211 1112222 122258999999887 45888
Q ss_pred EecCCcEEEEECCCCC
Q 005502 297 SYSGEHVYLMDVNHAG 312 (693)
Q Consensus 297 gs~Dg~V~lwDl~~~~ 312 (693)
-+..+..++|+++.+.
T Consensus 230 lTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 230 LTHMETFAIYELEDGS 245 (376)
T ss_pred EEccCceeEEEccCCC
Confidence 8889999999999854
No 165
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=2.3e-15 Score=154.74 Aligned_cols=225 Identities=14% Similarity=0.187 Sum_probs=169.6
Q ss_pred ccchhhhccccceEEeccCC-CcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCE
Q 005502 31 QMHSSLVRRLSQERELEGHQ-GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDEL 109 (693)
Q Consensus 31 ~~~~~~i~~l~~~~~l~gH~-~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~ 109 (693)
..|+.....+..++.+.|+. ..+.....++++++||..+..|.|.|....++..+.++ .-.+.|.+++|+.+ +..
T Consensus 283 ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~--KieG~v~~~~fsSd--sk~ 358 (514)
T KOG2055|consen 283 YSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF--KIEGVVSDFTFSSD--SKE 358 (514)
T ss_pred EEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee--eeccEEeeEEEecC--CcE
Confidence 34444555555566666765 46778899999999999999999999999999999988 36788999999977 588
Q ss_pred EEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCe--EEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCC
Q 005502 110 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRV--KKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG 187 (693)
Q Consensus 110 l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V--~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~ 187 (693)
|++++.+|.|.+||++.. .++..+.. .+.| ++++.++ ++.+||+|+..|.|.|||..+....
T Consensus 359 l~~~~~~GeV~v~nl~~~----------~~~~rf~D-~G~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~~s~~~s---- 422 (514)
T KOG2055|consen 359 LLASGGTGEVYVWNLRQN----------SCLHRFVD-DGSVHGTSLCISL-NGSYLATGSDSGIVNIYDGNSCFAS---- 422 (514)
T ss_pred EEEEcCCceEEEEecCCc----------ceEEEEee-cCccceeeeeecC-CCceEEeccCcceEEEeccchhhcc----
Confidence 888889999999999975 33555542 2333 5667677 6789999999999999997653211
Q ss_pred CCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeC--CCcEEEEecCCCCCCcccccCCCCCCccc
Q 005502 188 SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS--DAFARLYDRRMLPPLTSCQKRMSPPPCVN 265 (693)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~--Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~ 265 (693)
...+++.....-...|+++.|+|+ .++||.++. +..+|+-.+.+......|+...
T Consensus 423 ---------------~~PkPik~~dNLtt~Itsl~Fn~d-~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n------- 479 (514)
T KOG2055|consen 423 ---------------TNPKPIKTVDNLTTAITSLQFNHD-AQILAIASRVKKNALRLVHVPSCTVFSNFPTSN------- 479 (514)
T ss_pred ---------------CCCCchhhhhhhheeeeeeeeCcc-hhhhhhhhhccccceEEEeccceeeeccCCCCC-------
Confidence 112233333344568999999997 788887764 6789998888765554443221
Q ss_pred ccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECC
Q 005502 266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 309 (693)
Q Consensus 266 ~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~ 309 (693)
..-..|++++|||.|.+|++|..+|.|.||.+.
T Consensus 480 -----------~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 480 -----------TKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred -----------CcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 112259999999999999999999999999875
No 166
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.65 E-value=3.3e-15 Score=145.30 Aligned_cols=216 Identities=19% Similarity=0.254 Sum_probs=156.2
Q ss_pred eEEeccCCCcEEEEEECC-CCCEEEEEeCC-------CcEEEEECCCC---------cEEEEeccCCCcceEEEEEeeCC
Q 005502 43 ERELEGHQGCVNAISWNS-KGSLLISGSDD-------THINVWSYSSR---------KLLHSIETGHSANVFCTKFVPET 105 (693)
Q Consensus 43 ~~~l~gH~~~V~~l~~s~-~g~~LaSgs~D-------g~I~IWd~~~~---------~~~~~l~~~h~~~I~sl~f~p~~ 105 (693)
-+.|..|.+.|..|+-+| +..+|+|+-.+ ..+-||.+... +++..+.+.+.+.|.||.|.|+
T Consensus 56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn- 134 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN- 134 (370)
T ss_pred hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC-
Confidence 346778899999999999 56677777542 23779988642 3455665567789999999998
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEec-CCCcEEEEEeCCCcEEEEeCCCCCCCC
Q 005502 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV-GNPHVVWSASEDGTLRQHDFRQGSSCP 184 (693)
Q Consensus 106 ~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~~l~Sgs~Dg~V~iwDlr~~~~~~ 184 (693)
+..+++-. |..|.+|++...+..... -+...-..|....++-+|+| .+++.+++ ..|+++..||+|+.+..-
T Consensus 135 -s~klasm~-dn~i~l~~l~ess~~vae----v~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~~~ 207 (370)
T KOG1007|consen 135 -SDKLASMD-DNNIVLWSLDESSKIVAE----VLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKKNN 207 (370)
T ss_pred -CCeeEEec-cCceEEEEcccCcchhee----ecccccccccceecccccCCCCccceEEE-eCCCcEEEEEccchhhhc
Confidence 46777665 899999999975432110 01111123667788889999 56677755 457999999999865321
Q ss_pred CCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcc
Q 005502 185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV 264 (693)
Q Consensus 185 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~ 264 (693)
.....|...|..+.|+|....+|++|+.||+|+|||.|+.+ ..+
T Consensus 208 ------------------------sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk------------~pv 251 (370)
T KOG1007|consen 208 ------------------------SIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK------------FPV 251 (370)
T ss_pred ------------------------chhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC------------ccc
Confidence 11124556789999999988999999999999999999754 112
Q ss_pred cccccCccccCCCCccceEEEEEcCCC-CEEEEEecCCcEEEEECCC
Q 005502 265 NYFCPMHLSEHGRSSLHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 265 ~~~~~~~~~~~~h~~~~V~~v~fspdg-~~L~sgs~Dg~V~lwDl~~ 310 (693)
+.. .+|.. +|++|.|+|.- +.|++|+.|..|.||...+
T Consensus 252 ~el-------~~HsH-WvW~VRfn~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 252 QEL-------PGHSH-WVWAVRFNPEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred ccc-------CCCce-EEEEEEecCccceEEEecCCCceeEEEeccc
Confidence 222 34544 89999999965 5677888999999998876
No 167
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.65 E-value=2e-15 Score=160.50 Aligned_cols=231 Identities=15% Similarity=0.205 Sum_probs=174.5
Q ss_pred hccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCC
Q 005502 37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD 116 (693)
Q Consensus 37 i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~D 116 (693)
...+.+..+|+||.+.|+|++|+.+|+++|||+.|..|.||+.. ....+...|.+.|.|+.|+|- .+.|+||+..
T Consensus 40 ~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k---lEG~LkYSH~D~IQCMsFNP~--~h~LasCsLs 114 (1081)
T KOG1538|consen 40 TSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK---LEGILKYSHNDAIQCMSFNPI--THQLASCSLS 114 (1081)
T ss_pred CCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccc---ccceeeeccCCeeeEeecCch--HHHhhhcchh
Confidence 56678899999999999999999999999999999999999964 333444689999999999999 4899999863
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceE
Q 005502 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (693)
Q Consensus 117 g~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~ 196 (693)
..-+|..... .+... ....+|.+.+|.. ++.+|+-|-.||+|.+-+-....
T Consensus 115 -dFglWS~~qK-----------~V~K~-kss~R~~~CsWtn-DGqylalG~~nGTIsiRNk~gEe--------------- 165 (1081)
T KOG1538|consen 115 -DFGLWSPEQK-----------SVSKH-KSSSRIICCSWTN-DGQYLALGMFNGTISIRNKNGEE--------------- 165 (1081)
T ss_pred -hccccChhhh-----------hHHhh-hhheeEEEeeecC-CCcEEEEeccCceEEeecCCCCc---------------
Confidence 5677877642 12222 2356788899987 78999999999999887532221
Q ss_pred EEeccCCceeeecCCCCCccceEEEEEcCCCC----cEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCcc
Q 005502 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRP----HLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL 272 (693)
Q Consensus 197 l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~----~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (693)
...+..+.+...+|.+++|+|..+ ..+++.....++.+|.+. ++.+.+-..-...|-|+++|..+..
T Consensus 166 --------k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy 236 (1081)
T KOG1538|consen 166 --------KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEY 236 (1081)
T ss_pred --------ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcE
Confidence 112334445577899999999643 578888888999988875 3333333333445678888765531
Q ss_pred --------------------ccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCC
Q 005502 273 --------------------SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 273 --------------------~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~ 310 (693)
..-+..+.+|+.|+..|++++++.|+.||+|-.|++-.
T Consensus 237 ~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 237 ILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred EEEccCCCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 11234456899999999999999999999999999754
No 168
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=4.6e-16 Score=154.89 Aligned_cols=106 Identities=20% Similarity=0.220 Sum_probs=92.7
Q ss_pred chhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCC
Q 005502 361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS 440 (693)
Q Consensus 361 ~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~ 440 (693)
+.++..|+.||.+|+..+ |..|+.+|+++|+..- .++.+.++||.|||||.+-++. |..||.||.+||.++|.|
T Consensus 79 E~Aen~KeeGN~~fK~Kr-yk~A~~~Yt~Glk~kc--~D~dlnavLY~NRAAa~~~l~N---yRs~l~Dcs~al~~~P~h 152 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKR-YKDAVESYTEGLKKKC--ADPDLNAVLYTNRAAAQLYLGN---YRSALNDCSAALKLKPTH 152 (390)
T ss_pred HHHHHHHHHhHHHHHhhh-HHHHHHHHHHHHhhcC--CCccHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHhcCcch
Confidence 478999999999999999 9999999999998643 4578889999999999999755 999999999999999999
Q ss_pred cchhhhHHHHHHHhccHHHHHHHHHHHcccCC
Q 005502 441 FRAHLYMSEALEQLCKYKEALDFAIAAQCLDP 472 (693)
Q Consensus 441 ~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p 472 (693)
.||++|-|+|+++|+++.+|.......+..+-
T Consensus 153 ~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 153 LKAYIRGAKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 99999999999999997777666555544433
No 169
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=3.4e-14 Score=152.52 Aligned_cols=235 Identities=13% Similarity=0.135 Sum_probs=172.4
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEE-EeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCC
Q 005502 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH-SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 126 (693)
Q Consensus 48 gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~-~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~ 126 (693)
--..+|.+|+|+.+.+.||.+=.||.|-||++..+-+.. .+..+-...|.+++|++. ..|.+.+.+|+|.-||+.+
T Consensus 23 ~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~---~RLFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 23 YKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEG---GRLFSSGLSGSITEWDLHT 99 (691)
T ss_pred eeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccC---CeEEeecCCceEEEEeccc
Confidence 346789999999999999999999999999998765443 443344578999999965 5788888999999999997
Q ss_pred CCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCcee
Q 005502 127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206 (693)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 206 (693)
. ++...+....+.|.+++.+| ....++.|++||.+..++..... +.
T Consensus 100 l----------k~~~~~d~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~--------------I~--------- 145 (691)
T KOG2048|consen 100 L----------KQKYNIDSNGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDK--------------IT--------- 145 (691)
T ss_pred C----------ceeEEecCCCcceeEEEeCC-ccceEEeecCCceEEEEecCCce--------------EE---------
Confidence 5 56777788889999999999 66888899999976666665432 11
Q ss_pred eecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccC-CCCccceEEE
Q 005502 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH-GRSSLHLTHV 285 (693)
Q Consensus 207 ~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~V~~v 285 (693)
.-...+.+...|.+++|+|+ +..+++|+.||.|++||...+..+.-. .+.+..- .....-|++|
T Consensus 146 ~~r~l~rq~sRvLslsw~~~-~~~i~~Gs~Dg~Iriwd~~~~~t~~~~--------------~~~~d~l~k~~~~iVWSv 210 (691)
T KOG2048|consen 146 YKRSLMRQKSRVLSLSWNPT-GTKIAGGSIDGVIRIWDVKSGQTLHII--------------TMQLDRLSKREPTIVWSV 210 (691)
T ss_pred EEeecccccceEEEEEecCC-ccEEEecccCceEEEEEcCCCceEEEe--------------eecccccccCCceEEEEE
Confidence 11122334578999999998 678999999999999999877543310 0111111 1122348899
Q ss_pred EEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCc
Q 005502 286 TFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNG 335 (693)
Q Consensus 286 ~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~g 335 (693)
.|-.++ .|++|..-|.|.+||...+....-.-.+...+..++..+..+.
T Consensus 211 ~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~ 259 (691)
T KOG2048|consen 211 LFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDR 259 (691)
T ss_pred EEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCe
Confidence 988776 4888999999999999997655554444444455555554333
No 170
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=6.9e-15 Score=151.33 Aligned_cols=231 Identities=15% Similarity=0.188 Sum_probs=168.7
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEECCC--CcEEEEeccCCCcceEEEEEeeCCCCC-EEEEEeCCCcEEEEEcCC
Q 005502 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSS--RKLLHSIETGHSANVFCTKFVPETSDE-LVVSGAGDAEVRLFNLSR 126 (693)
Q Consensus 50 ~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~--~~~~~~l~~~h~~~I~sl~f~p~~~~~-~l~sgs~Dg~V~vwdl~~ 126 (693)
.+.|+++.|+|.-.+|++++.|++++||.++. ...++.+ .--..+|.+.+|.|+ |. .+++++.-...+.||+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~-~l~~fPi~~a~f~p~--G~~~i~~s~rrky~ysyDle~ 289 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSI-HLEKFPIQKAEFAPN--GHSVIFTSGRRKYLYSYDLET 289 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheee-eeccCccceeeecCC--CceEEEecccceEEEEeeccc
Confidence 57899999999999999999999999998863 3355555 334679999999998 55 899999999999999986
Q ss_pred CCCCCCCCCCCCCceeeccCC-CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCce
Q 005502 127 FSGRGLDDNAITPSALYQCHT-RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (693)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (693)
... .++....++. ..+....++| ++++|+..|..|.|.+....+++...
T Consensus 290 ak~--------~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~eli~--------------------- 339 (514)
T KOG2055|consen 290 AKV--------TKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTKELIT--------------------- 339 (514)
T ss_pred ccc--------ccccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhhhhhhh---------------------
Confidence 432 2333334443 4678889999 66799999999999999887765320
Q ss_pred eeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEE
Q 005502 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV 285 (693)
Q Consensus 206 ~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v 285 (693)
.-.-...|..++|+.+ ++.|++++.+|.|.+||++... |+..|.. .....-+++
T Consensus 340 -----s~KieG~v~~~~fsSd-sk~l~~~~~~GeV~v~nl~~~~-------------~~~rf~D-------~G~v~gts~ 393 (514)
T KOG2055|consen 340 -----SFKIEGVVSDFTFSSD-SKELLASGGTGEVYVWNLRQNS-------------CLHRFVD-------DGSVHGTSL 393 (514)
T ss_pred -----eeeeccEEeeEEEecC-CcEEEEEcCCceEEEEecCCcc-------------eEEEEee-------cCccceeee
Confidence 0012456889999987 6888888899999999999763 3333311 111135789
Q ss_pred EEcCCCCEEEEEecCCcEEEEECCCCC---cceEE---eecCCCceeEEeccCCCccccc
Q 005502 286 TFSPNGEEVLLSYSGEHVYLMDVNHAG---GRAMR---YTVGDASKIMSFTPTLNGLELQ 339 (693)
Q Consensus 286 ~fspdg~~L~sgs~Dg~V~lwDl~~~~---~~~~~---~~~~~~~~~~~~~p~~~g~~~~ 339 (693)
+.|++|.||++|+..|.|.|||.++-. .+... ......+..+.|+|+..-+++.
T Consensus 394 ~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAia 453 (514)
T KOG2055|consen 394 CISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIA 453 (514)
T ss_pred eecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhh
Confidence 999999999999999999999976621 11111 1122345667788876655443
No 171
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.65 E-value=4.8e-15 Score=159.03 Aligned_cols=225 Identities=17% Similarity=0.191 Sum_probs=165.9
Q ss_pred eEEeccCCCcEEEEEECCCCCEEEEEeCCC-----cEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 005502 43 ERELEGHQGCVNAISWNSKGSLLISGSDDT-----HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (693)
Q Consensus 43 ~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg-----~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg 117 (693)
++.|.||.-.|.|++.+|+|+++||+.... .|+||+..+...+..+ .+|.-.|+.++|+|+ |++|++.+.|+
T Consensus 518 v~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L-~~HsLTVT~l~FSpd--g~~LLsvsRDR 594 (764)
T KOG1063|consen 518 VHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQEL-EGHSLTVTRLAFSPD--GRYLLSVSRDR 594 (764)
T ss_pred hHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhhee-cccceEEEEEEECCC--CcEEEEeecCc
Confidence 556789999999999999999999997543 4899999998888888 799999999999999 79999999999
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCC--CCCCCCCCCcccce
Q 005502 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS--SCPPAGSSHQECRN 195 (693)
Q Consensus 118 ~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~--~~~~~~~~~~~~~~ 195 (693)
++.+|......... ......+.|+.-|.+..|+| +.++|+|+|.|.+|++|...... ...
T Consensus 595 t~sl~~~~~~~~~e------~~fa~~k~HtRIIWdcsW~p-de~~FaTaSRDK~VkVW~~~~~~d~~i~----------- 656 (764)
T KOG1063|consen 595 TVSLYEVQEDIKDE------FRFACLKAHTRIIWDCSWSP-DEKYFATASRDKKVKVWEEPDLRDKYIS----------- 656 (764)
T ss_pred eEEeeeeecccchh------hhhccccccceEEEEcccCc-ccceeEEecCCceEEEEeccCchhhhhh-----------
Confidence 99999986432111 11233678999999999999 67889999999999999886652 110
Q ss_pred EEEeccCCceeeecCCCCCccceEEEEEcCCC----CcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCc
Q 005502 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTR----PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 271 (693)
Q Consensus 196 ~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~----~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (693)
-.........|+.+++.|.. ..++++|-..|.|.+|.........+.. ....+..
T Consensus 657 ------------~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~---------~~~~~~~ 715 (764)
T KOG1063|consen 657 ------------RFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVG---------TFNLDTR 715 (764)
T ss_pred ------------hhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccce---------eeeeccc
Confidence 00122345678888887743 3488999999999999865322111110 0000111
Q ss_pred cccCCCCccceEEEEEcCC----------CCEEEEEecCCcEEEEECC
Q 005502 272 LSEHGRSSLHLTHVTFSPN----------GEEVLLSYSGEHVYLMDVN 309 (693)
Q Consensus 272 ~~~~~h~~~~V~~v~fspd----------g~~L~sgs~Dg~V~lwDl~ 309 (693)
+.........|+.+.|.|. ...|++|+.|..++++++.
T Consensus 716 l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 716 LCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred cccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 1112222336999999975 2456899999999999875
No 172
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.64 E-value=8.2e-15 Score=142.74 Aligned_cols=203 Identities=16% Similarity=0.299 Sum_probs=153.2
Q ss_pred cCCCcEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcE--EEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEc
Q 005502 48 GHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKL--LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124 (693)
Q Consensus 48 gH~~~V~~l~~s~-~g~~LaSgs~Dg~I~IWd~~~~~~--~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl 124 (693)
.|..++++..|+. +.+++.+.|-|.+..|||++++.. +++-...|...|+.|+|...+ -++||+++.||+||+||+
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s-~~~FASvgaDGSvRmFDL 226 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGS-RDVFASVGADGSVRMFDL 226 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCc-cceEEEecCCCcEEEEEe
Confidence 4678999999998 788999999999999999998733 333336999999999999864 579999999999999999
Q ss_pred CCCCCCCCCCCCCCCceeecc--CCCCeEEEEEecCCCcEEEEEeCCC-cEEEEeCCCCCCCCCCCCCCcccceEEEecc
Q 005502 125 SRFSGRGLDDNAITPSALYQC--HTRRVKKLAVEVGNPHVVWSASEDG-TLRQHDFRQGSSCPPAGSSHQECRNILLDLR 201 (693)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~--h~~~V~~l~~sp~~~~~l~Sgs~Dg-~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~ 201 (693)
+.... ..-.+.. ...+...++|+++++++++|-..|. .|.+.|+|.+..
T Consensus 227 R~leH---------STIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t------------------- 278 (364)
T KOG0290|consen 227 RSLEH---------STIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT------------------- 278 (364)
T ss_pred ccccc---------ceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc-------------------
Confidence 96421 1122222 1457889999999999999987765 688999998653
Q ss_pred CCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccc
Q 005502 202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH 281 (693)
Q Consensus 202 ~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 281 (693)
.+....+|...|+.++|.|..+..|++++.|..+-|||+...... ....+.+.+- ....
T Consensus 279 -----pva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~------~~~dPilay~----------a~~E 337 (364)
T KOG0290|consen 279 -----PVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRE------NGEDPILAYT----------AGGE 337 (364)
T ss_pred -----ceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccccccc------CCCCchhhhh----------ccce
Confidence 244556788999999999999999999999999999999854210 0000111110 1225
Q ss_pred eEEEEEcC-CCCEEEEEecC
Q 005502 282 LTHVTFSP-NGEEVLLSYSG 300 (693)
Q Consensus 282 V~~v~fsp-dg~~L~sgs~D 300 (693)
|+.+.|++ .+.+|+.+++.
T Consensus 338 VNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 338 VNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred eeeeeecccCCCEEEEEecC
Confidence 99999996 45677666543
No 173
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=6e-15 Score=146.81 Aligned_cols=249 Identities=16% Similarity=0.191 Sum_probs=171.6
Q ss_pred cccccchhhhccccceEEeccCCCcEEEEEECC--CCCEEEEEeCCCcEEEEECCCCcEEEEec-cCCCc-ceEEEEEee
Q 005502 28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSRKLLHSIE-TGHSA-NVFCTKFVP 103 (693)
Q Consensus 28 ~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~--~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~-~~h~~-~I~sl~f~p 103 (693)
..+++++. .+++...++++|...++.+.|.. .+..+.||+.||+|++||+.+......+. ..|.+ +-.|++-.-
T Consensus 50 gsv~lyd~--~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nc 127 (376)
T KOG1188|consen 50 GSVRLYDK--GTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNC 127 (376)
T ss_pred CeEEEEec--cchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccC
Confidence 44555543 33778889999999999999988 57899999999999999998776554442 34442 334444433
Q ss_pred CCCCCEEEEEeC----CCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 005502 104 ETSDELVVSGAG----DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (693)
Q Consensus 104 ~~~~~~l~sgs~----Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~ 179 (693)
. ++++++|.. +-.|.+||++..+. ..-.....|...|++|.|+|.++++|+|||.||.|.+||+..
T Consensus 128 k--~~ii~~GtE~~~s~A~v~lwDvR~~qq--------~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~ 197 (376)
T KOG1188|consen 128 K--KNIIACGTELTRSDASVVLWDVRSEQQ--------LLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKK 197 (376)
T ss_pred c--CCeEEeccccccCceEEEEEEeccccc--------hhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCC
Confidence 3 678887753 67799999997531 123345679999999999999999999999999999999976
Q ss_pred CCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCC
Q 005502 180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS 259 (693)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~ 259 (693)
... .+. +...-.+...|.++.|...+-+.|.+-+......+|++..+.....+..+-.
T Consensus 198 d~E--------eDa--------------L~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~ 255 (376)
T KOG1188|consen 198 DNE--------EDA--------------LLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDV 255 (376)
T ss_pred Ccc--------hhh--------------HHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccc
Confidence 521 111 1111134557899999987656788889999999999988775443322200
Q ss_pred C------CCcccccccCc-----------------------------------cccCCCCccceEEEEEcCCCCEEEEEe
Q 005502 260 P------PPCVNYFCPMH-----------------------------------LSEHGRSSLHLTHVTFSPNGEEVLLSY 298 (693)
Q Consensus 260 ~------~~~~~~~~~~~-----------------------------------~~~~~h~~~~V~~v~fspdg~~L~sgs 298 (693)
. .....++...| ...+++....|.++.|...+..+++|+
T Consensus 256 ~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGG 335 (376)
T KOG1188|consen 256 SADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGG 335 (376)
T ss_pred hhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccC
Confidence 0 00000000000 001232233577888888899999999
Q ss_pred cCCcEEEEECCC
Q 005502 299 SGEHVYLMDVNH 310 (693)
Q Consensus 299 ~Dg~V~lwDl~~ 310 (693)
.||.+.+|....
T Consensus 336 EDG~l~~Wk~~d 347 (376)
T KOG1188|consen 336 EDGLLQAWKVED 347 (376)
T ss_pred CCceEEEEecCC
Confidence 999999998644
No 174
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=6.8e-14 Score=150.17 Aligned_cols=250 Identities=14% Similarity=0.212 Sum_probs=182.4
Q ss_pred cccccchhhhccccceEEeccCC-CcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCC
Q 005502 28 HSLQMHSSLVRRLSQERELEGHQ-GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS 106 (693)
Q Consensus 28 ~~l~~~~~~i~~l~~~~~l~gH~-~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~ 106 (693)
..+-+|-. ....-++.++.||. ..|-+|+|.+ |..|.|.+.+|.|.-||+.+.+.+..+ ....+.|++++.+|.
T Consensus 47 g~IEiwN~-~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~-d~~gg~IWsiai~p~-- 121 (691)
T KOG2048|consen 47 GNIEIWNL-SNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNI-DSNGGAIWSIAINPE-- 121 (691)
T ss_pred CcEEEEcc-CCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEe-cCCCcceeEEEeCCc--
Confidence 34444432 23455677788875 5799999995 556788889999999999999999988 678899999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCC
Q 005502 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA 186 (693)
Q Consensus 107 ~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~ 186 (693)
+..++.|+.||.+..+++.... +.....+...+++|.+++|+| .+..|++|+.||.|++||...++...
T Consensus 122 ~~~l~IgcddGvl~~~s~~p~~--------I~~~r~l~rq~sRvLslsw~~-~~~~i~~Gs~Dg~Iriwd~~~~~t~~-- 190 (691)
T KOG2048|consen 122 NTILAIGCDDGVLYDFSIGPDK--------ITYKRSLMRQKSRVLSLSWNP-TGTKIAGGSIDGVIRIWDVKSGQTLH-- 190 (691)
T ss_pred cceEEeecCCceEEEEecCCce--------EEEEeecccccceEEEEEecC-CccEEEecccCceEEEEEcCCCceEE--
Confidence 5899999999977777766421 122334445678999999999 56778899999999999998876431
Q ss_pred CCCCcccceEEEeccCCceeeecCCCC-CccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCccc
Q 005502 187 GSSHQECRNILLDLRCGAKRSLADPPK-QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN 265 (693)
Q Consensus 187 ~~~~~~~~~~l~~~~~~~~~~l~~~~~-~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~ 265 (693)
+.+.... .... ...-|.++.|-.+ ..|++|.+-|+|.+||...+..+.++
T Consensus 191 ----------~~~~~~d------~l~k~~~~iVWSv~~Lrd--~tI~sgDS~G~V~FWd~~~gTLiqS~----------- 241 (691)
T KOG2048|consen 191 ----------IITMQLD------RLSKREPTIVWSVLFLRD--STIASGDSAGTVTFWDSIFGTLIQSH----------- 241 (691)
T ss_pred ----------Eeeeccc------ccccCCceEEEEEEEeec--CcEEEecCCceEEEEcccCcchhhhh-----------
Confidence 1111111 1111 3456778887754 58999999999999999887655443
Q ss_pred ccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcc----eEEeecCCCceeEEeccC
Q 005502 266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR----AMRYTVGDASKIMSFTPT 332 (693)
Q Consensus 266 ~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~----~~~~~~~~~~~~~~~~p~ 332 (693)
.-|.. .|.+++..+++.++++++.|+.|..|...+.... .....+.+..+.++..+.
T Consensus 242 ---------~~h~a-dVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~ 302 (691)
T KOG2048|consen 242 ---------SCHDA-DVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN 302 (691)
T ss_pred ---------hhhhc-ceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc
Confidence 11222 5999999999999999999999999998885432 222344555566665544
No 175
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.62 E-value=4.4e-15 Score=146.92 Aligned_cols=257 Identities=16% Similarity=0.190 Sum_probs=169.6
Q ss_pred cCCCcEEEEEECCC----CCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 005502 48 GHQGCVNAISWNSK----GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 123 (693)
Q Consensus 48 gH~~~V~~l~~s~~----g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwd 123 (693)
.|......++|+-+ ..+||.|+.-|.|+|.|+.++++...+ .+|...|..++|+|.. .+++++|+.|.+||+|+
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~-~ghG~sINeik~~p~~-~qlvls~SkD~svRlwn 164 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNY-RGHGGSINEIKFHPDR-PQLVLSASKDHSVRLWN 164 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccce-eccCccchhhhcCCCC-CcEEEEecCCceEEEEe
Confidence 37777888888763 348999999999999999999999988 7999999999999995 68999999999999999
Q ss_pred cCCCCCCCCCCCCCCCcee---eccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEec
Q 005502 124 LSRFSGRGLDDNAITPSAL---YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (693)
Q Consensus 124 l~~~~~~~~~~~~~~~~~~---~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~ 200 (693)
+++. .++.. ..+|...|.++.|++ ++..|+|+|.|-+|++|++...+.... .++......-
T Consensus 165 I~~~----------~Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~-----lE~s~~~~~~ 228 (385)
T KOG1034|consen 165 IQTD----------VCVAVFGGVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNK-----LELSITYSPN 228 (385)
T ss_pred ccCC----------eEEEEecccccccCcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhh-----hhhhcccCCC
Confidence 9964 34444 457999999999999 567999999999999999985432100 0010000000
Q ss_pred cCC--------ceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCC-CCCcccccCCCCCCcccccccCc
Q 005502 201 RCG--------AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPPPCVNYFCPMH 271 (693)
Q Consensus 201 ~~~--------~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~-~~~~~~~~~~~~~~~~~~~~~~~ 271 (693)
.+. ..+.......|...|-|+.|-- +++++=+-++.|..|-.-.. +.+... ..|..+...+....
T Consensus 229 ~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g---d~ilSkscenaI~~w~pgkl~e~~~~v---kp~es~~Ti~~~~~ 302 (385)
T KOG1034|consen 229 KTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG---DFILSKSCENAIVCWKPGKLEESIHNV---KPPESATTILGEFD 302 (385)
T ss_pred CccCcCCccccccccccccccccchHHHHHHHh---hheeecccCceEEEEecchhhhhhhcc---CCCccceeeeeEec
Confidence 000 0001112234555666666663 58888888999999987322 211111 11111211111111
Q ss_pred cccCCCCccceEE--EEEcCCCCEEEEEecCCcEEEEECCCCCcceE-Ee---ecCCCceeEEeccCC
Q 005502 272 LSEHGRSSLHLTH--VTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM-RY---TVGDASKIMSFTPTL 333 (693)
Q Consensus 272 ~~~~~h~~~~V~~--v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~-~~---~~~~~~~~~~~~p~~ 333 (693)
. ....|+- .+|+|-++.|+.|...|.|++||+.+...+.. .. ..+..+++.+|+-+.
T Consensus 303 ~-----~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dg 365 (385)
T KOG1034|consen 303 Y-----PMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDG 365 (385)
T ss_pred c-----CccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccC
Confidence 1 1112444 45668899999999999999999998543211 11 113345555665543
No 176
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.61 E-value=9.9e-16 Score=160.64 Aligned_cols=127 Identities=19% Similarity=0.166 Sum_probs=119.4
Q ss_pred hhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCc
Q 005502 362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSF 441 (693)
Q Consensus 362 ~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~ 441 (693)
.+.+++.++|.+|+... |..||.+|++||++.|++ +++|.|||++|+|. +++..|+.||.+||+++|.+.
T Consensus 3 ~a~e~k~ean~~l~~~~-fd~avdlysKaI~ldpnc------a~~~anRa~a~lK~---e~~~~Al~Da~kaie~dP~~~ 72 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKV-FDVAVDLYSKAIELDPNC------AIYFANRALAHLKV---ESFGGALHDALKAIELDPTYI 72 (476)
T ss_pred hhhhhhhHHhhhcccch-HHHHHHHHHHHHhcCCcc------eeeechhhhhheee---chhhhHHHHHHhhhhcCchhh
Confidence 46789999999999999 999999999999999998 89999999999995 669999999999999999999
Q ss_pred chhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHHHHHHHHHHHHhhccc
Q 005502 442 RAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNK 498 (693)
Q Consensus 442 KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l~~~i~~~~~~~~~~ 498 (693)
|||+|||.|.++|+++.+|+.+|+....+.|++..+.+.+.+++..+.+.++++..-
T Consensus 73 K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~ 129 (476)
T KOG0376|consen 73 KAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAIL 129 (476)
T ss_pred heeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhccc
Confidence 999999999999999999999999999999999999999999999998877766543
No 177
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=4.4e-14 Score=156.27 Aligned_cols=207 Identities=13% Similarity=0.133 Sum_probs=151.3
Q ss_pred ceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 005502 42 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 121 (693)
Q Consensus 42 ~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~v 121 (693)
....|.-.+-++++++|+.+|+++|.||+|-.|++-++.+......+ .+|.++|.+|.|+|. +.+||+.+.||.|+|
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~l-rgh~apVl~l~~~p~--~~fLAvss~dG~v~i 164 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVL-RGHDAPVLQLSYDPK--GNFLAVSSCDGKVQI 164 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheee-cccCCceeeeeEcCC--CCEEEEEecCceEEE
Confidence 33344455678999999999999999999999999999998888888 799999999999999 799999999999999
Q ss_pred EEcCCCCCCCCCCCCCCCceeecc-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEec
Q 005502 122 FNLSRFSGRGLDDNAITPSALYQC-HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (693)
Q Consensus 122 wdl~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~ 200 (693)
|++........-. ........ ....+..++|+|+++. |+..+.|+.|++|+....... +.+
T Consensus 165 w~~~~~~~~~tl~---~v~k~n~~~~s~i~~~~aW~Pk~g~-la~~~~d~~Vkvy~r~~we~~--------------f~L 226 (933)
T KOG1274|consen 165 WDLQDGILSKTLT---GVDKDNEFILSRICTRLAWHPKGGT-LAVPPVDNTVKVYSRKGWELQ--------------FKL 226 (933)
T ss_pred EEcccchhhhhcc---cCCccccccccceeeeeeecCCCCe-EEeeccCCeEEEEccCCceeh--------------eee
Confidence 9999642111000 00001111 1456788999996655 556778899999998776522 222
Q ss_pred cCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCcc
Q 005502 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 280 (693)
Q Consensus 201 ~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 280 (693)
+.. .+...+..+.|+|. |.|||+++.||.|.|||..+... + ....
T Consensus 227 r~~---------~~ss~~~~~~wsPn-G~YiAAs~~~g~I~vWnv~t~~~-~------------------------~~~~ 271 (933)
T KOG1274|consen 227 RDK---------LSSSKFSDLQWSPN-GKYIAASTLDGQILVWNVDTHER-H------------------------EFKR 271 (933)
T ss_pred ccc---------ccccceEEEEEcCC-CcEEeeeccCCcEEEEecccchh-c------------------------cccc
Confidence 211 12233889999997 89999999999999999986321 0 1122
Q ss_pred ceEEEEEcCCCCEEEEEecCCcEE
Q 005502 281 HLTHVTFSPNGEEVLLSYSGEHVY 304 (693)
Q Consensus 281 ~V~~v~fspdg~~L~sgs~Dg~V~ 304 (693)
.|++++|.|++.-|-.-...|...
T Consensus 272 ~Vc~~aw~p~~n~it~~~~~g~~~ 295 (933)
T KOG1274|consen 272 AVCCEAWKPNANAITLITALGTLG 295 (933)
T ss_pred eeEEEecCCCCCeeEEEeeccccc
Confidence 599999999987665444344333
No 178
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.61 E-value=5.8e-14 Score=155.00 Aligned_cols=226 Identities=18% Similarity=0.181 Sum_probs=164.5
Q ss_pred ccceEEeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcE-----EEEeccCCCcceEEEEEeeCCCCCEEEEE
Q 005502 40 LSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKL-----LHSIETGHSANVFCTKFVPETSDELVVSG 113 (693)
Q Consensus 40 l~~~~~l~gH~~~V~~l~~s~-~g~~LaSgs~Dg~I~IWd~~~~~~-----~~~l~~~h~~~I~sl~f~p~~~~~~l~sg 113 (693)
..+...+. -...|.|++|+| +..+||.|..+|.|.+||+..+.. +......|..+|+.+.|..+..+.-|+++
T Consensus 233 ~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ 311 (555)
T KOG1587|consen 233 NTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSL 311 (555)
T ss_pred CCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEE
Confidence 55666666 356799999999 678999999999999999986654 23334579999999999987544569999
Q ss_pred eCCCcEEEEEcCCCCCCCC-----------------------------------------------CC------CCCCCc
Q 005502 114 AGDAEVRLFNLSRFSGRGL-----------------------------------------------DD------NAITPS 140 (693)
Q Consensus 114 s~Dg~V~vwdl~~~~~~~~-----------------------------------------------~~------~~~~~~ 140 (693)
+.||.|..|+++....... .. ...+..
T Consensus 312 ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~ 391 (555)
T KOG1587|consen 312 SSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGH 391 (555)
T ss_pred ecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccc
Confidence 9999999999874321100 00 001223
Q ss_pred eeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEE
Q 005502 141 ALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS 220 (693)
Q Consensus 141 ~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~s 220 (693)
..+..|.+.|+.+.++|-...+|.|++ |.+|++|....... ++.....+...+++
T Consensus 392 ~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~------------------------Pl~~~~~~~~~v~~ 446 (555)
T KOG1587|consen 392 STFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIAS------------------------PLLSLDSSPDYVTD 446 (555)
T ss_pred ccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCC------------------------cchhhhhccceeee
Confidence 355567888999999987777777777 89999998653221 11122233445999
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecC
Q 005502 221 CDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG 300 (693)
Q Consensus 221 l~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~D 300 (693)
++|||.++..|+++..||.|.+||+...... ++... ..+ ....+.+.|+++|+.|++|...
T Consensus 447 vaWSptrpavF~~~d~~G~l~iWDLl~~~~~----------Pv~s~--------~~~-~~~l~~~~~s~~g~~lavGd~~ 507 (555)
T KOG1587|consen 447 VAWSPTRPAVFATVDGDGNLDIWDLLQDDEE----------PVLSQ--------KVC-SPALTRVRWSPNGKLLAVGDAN 507 (555)
T ss_pred eEEcCcCceEEEEEcCCCceehhhhhccccC----------Ccccc--------ccc-ccccceeecCCCCcEEEEecCC
Confidence 9999999999999999999999999854321 11100 001 2246788999999999999999
Q ss_pred CcEEEEECCC
Q 005502 301 EHVYLMDVNH 310 (693)
Q Consensus 301 g~V~lwDl~~ 310 (693)
|.|++|++..
T Consensus 508 G~~~~~~l~~ 517 (555)
T KOG1587|consen 508 GTTHILKLSE 517 (555)
T ss_pred CcEEEEEcCc
Confidence 9999999986
No 179
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.61 E-value=3.8e-14 Score=139.96 Aligned_cols=239 Identities=17% Similarity=0.177 Sum_probs=167.3
Q ss_pred CCcEEEEEEC-------CCCCEEEEEeCCCcEEEEECCCCcEEEEec-cCCCc---ceEEEEEeeCCCCCEEEEEeCCCc
Q 005502 50 QGCVNAISWN-------SKGSLLISGSDDTHINVWSYSSRKLLHSIE-TGHSA---NVFCTKFVPETSDELVVSGAGDAE 118 (693)
Q Consensus 50 ~~~V~~l~~s-------~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~-~~h~~---~I~sl~f~p~~~~~~l~sgs~Dg~ 118 (693)
.+.|...+|- |+..++|+.+.|.-|++||..+|+....+. ..|.. ...+++|+|+ |..|++| ....
T Consensus 104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~D--GeqlfaG-ykrc 180 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPD--GEQLFAG-YKRC 180 (406)
T ss_pred CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCC--CCeEeec-ccce
Confidence 3567888886 567899999999999999999998877652 13433 3468999999 6788766 5689
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEE
Q 005502 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (693)
Q Consensus 119 V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~ 198 (693)
|+|||+..+ ++....... ..+...+..+-|.+++|+|.++.+++.|+.-..+-||.-....++
T Consensus 181 irvFdt~Rp-Gr~c~vy~t-~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl--------------- 243 (406)
T KOG2919|consen 181 IRVFDTSRP-GRDCPVYTT-VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPL--------------- 243 (406)
T ss_pred EEEeeccCC-CCCCcchhh-hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCce---------------
Confidence 999999653 222111110 011122346788999999999999999999888877765554422
Q ss_pred eccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEe-CCCcEEEEecCCCCC-CcccccCCCCCCcccccccCccccCC
Q 005502 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRRMLPP-LTSCQKRMSPPPCVNYFCPMHLSEHG 276 (693)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs-~Dg~I~lwD~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (693)
....+|...|+.+.|.++ ++.|.+|+ .|..|-.||+|.... +-.+. .|. +
T Consensus 244 ----------~llggh~gGvThL~~~ed-Gn~lfsGaRk~dkIl~WDiR~~~~pv~~L~--------------rhv---~ 295 (406)
T KOG2919|consen 244 ----------QLLGGHGGGVTHLQWCED-GNKLFSGARKDDKILCWDIRYSRDPVYALE--------------RHV---G 295 (406)
T ss_pred ----------eeecccCCCeeeEEeccC-cCeecccccCCCeEEEEeehhccchhhhhh--------------hhc---c
Confidence 222367789999999998 56677766 488999999996531 11110 111 1
Q ss_pred CCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCC-cceEEeecCCCceeEEeccCCCccc
Q 005502 277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG-GRAMRYTVGDASKIMSFTPTLNGLE 337 (693)
Q Consensus 277 h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~-~~~~~~~~~~~~~~~~~~p~~~g~~ 337 (693)
.++ .-.-....|+|++|++|+.||.|++||+.... .+.+.....+..+.++++|...-++
T Consensus 296 ~TN-QRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpila 356 (406)
T KOG2919|consen 296 DTN-QRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILA 356 (406)
T ss_pred Ccc-ceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceee
Confidence 112 12235556999999999999999999999944 4566666677888889998755443
No 180
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.61 E-value=2.1e-13 Score=142.28 Aligned_cols=243 Identities=9% Similarity=0.080 Sum_probs=152.4
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEE-EEEeCCCcEEEEEcCCCCCCCCCCCCCCCc
Q 005502 62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPS 140 (693)
Q Consensus 62 g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l-~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~ 140 (693)
+.+++|++.|+.|.+||+.+++.+..+ ..+ ..+.+++|+|+ +..+ ++++.++.|++||+... +..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~-~~~-~~~~~l~~~~d--g~~l~~~~~~~~~v~~~d~~~~----------~~~ 66 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTF-PVG-QRPRGITLSKD--GKLLYVCASDSDTIQVIDLATG----------EVI 66 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEE-ECC-CCCCceEECCC--CCEEEEEECCCCeEEEEECCCC----------cEE
Confidence 357899999999999999999988887 344 34678999998 4554 67778999999999854 223
Q ss_pred eeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCC--------cccc-----------eEEEecc
Q 005502 141 ALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSH--------QECR-----------NILLDLR 201 (693)
Q Consensus 141 ~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~--------~~~~-----------~~l~~~~ 201 (693)
..+..+. .+..++|+|++..++++++.|+.|++||+++........... .+.. ...++..
T Consensus 67 ~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~ 145 (300)
T TIGR03866 67 GTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTK 145 (300)
T ss_pred EeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCC
Confidence 3343333 356789999655555666778999999998754321111000 0111 1112322
Q ss_pred CCceeeecCCCCCccceEEEEEcCCCCcEE-EEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCcc
Q 005502 202 CGAKRSLADPPKQTLSLKSCDISSTRPHLL-LVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 280 (693)
Q Consensus 202 ~~~~~~l~~~~~~~~~v~sl~~sp~~~~~L-atgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 280 (693)
++....... ......+++|+|+ +.+| +++..++.|++||+.+.+.+..+..... . .. ....
T Consensus 146 ~~~~~~~~~---~~~~~~~~~~s~d-g~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~----------~-~~---~~~~ 207 (300)
T TIGR03866 146 TYEIVDNVL---VDQRPRFAEFTAD-GKELWVSSEIGGTVSVIDVATRKVIKKITFEIP----------G-VH---PEAV 207 (300)
T ss_pred CCeEEEEEE---cCCCccEEEECCC-CCEEEEEcCCCCEEEEEEcCcceeeeeeeeccc----------c-cc---cccC
Confidence 222111000 1123467899998 4555 4555799999999998754332211000 0 00 0011
Q ss_pred ceEEEEEcCCCCEEEEE-ecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCcccc
Q 005502 281 HLTHVTFSPNGEEVLLS-YSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLEL 338 (693)
Q Consensus 281 ~V~~v~fspdg~~L~sg-s~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~ 338 (693)
....++|+|+|++++++ +.++.|.+||+.+++... ....++.+..++|+|+...+..
T Consensus 208 ~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~g~~l~~ 265 (300)
T TIGR03866 208 QPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLD-YLLVGQRVWQLAFTPDEKYLLT 265 (300)
T ss_pred CccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEE-EEEeCCCcceEEECCCCCEEEE
Confidence 24568999999987665 457789999998865433 3344567778889998776543
No 181
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.60 E-value=6.5e-15 Score=153.54 Aligned_cols=194 Identities=16% Similarity=0.308 Sum_probs=148.9
Q ss_pred ccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 005502 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (693)
Q Consensus 38 ~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg 117 (693)
+..+++.....|.++|.|-.|+|+|.-|+|++.||.|+||.- +|....++ .....+|.|++|.|++ .+.+++.+ +
T Consensus 92 k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl-~Q~~~~v~c~~W~p~S-~~vl~c~g--~ 166 (737)
T KOG1524|consen 92 KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTV-VQNEESIRCARWAPNS-NSIVFCQG--G 166 (737)
T ss_pred ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHH-hhcCceeEEEEECCCC-CceEEecC--C
Confidence 456677778899999999999999999999999999999995 45444444 4567789999999997 55666554 4
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEE
Q 005502 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (693)
Q Consensus 118 ~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l 197 (693)
.+.|=.+... ..+-.+++|.+-|.++.|+| ..++|+||++|-..++||-...
T Consensus 167 h~~IKpL~~n----------~k~i~WkAHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~G~----------------- 218 (737)
T KOG1524|consen 167 HISIKPLAAN----------SKIIRWRAHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQGA----------------- 218 (737)
T ss_pred eEEEeecccc----------cceeEEeccCcEEEEeecCc-cccceeecCCceeEEeecccCc-----------------
Confidence 5555555433 33567889999999999999 5689999999999999996432
Q ss_pred EeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCC
Q 005502 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 277 (693)
Q Consensus 198 ~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 277 (693)
.++....|..+|++++|+|+ ..+++++. .+.|+=..+
T Consensus 219 ---------~Lf~S~~~ey~ITSva~npd--~~~~v~S~-nt~R~~~p~------------------------------- 255 (737)
T KOG1524|consen 219 ---------NLFTSAAEEYAITSVAFNPE--KDYLLWSY-NTARFSSPR------------------------------- 255 (737)
T ss_pred ---------ccccCChhccceeeeeeccc--cceeeeee-eeeeecCCC-------------------------------
Confidence 23344467789999999997 57777765 344422111
Q ss_pred CccceEEEEEcCCCCEEEEEecCCcEEEEEC
Q 005502 278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV 308 (693)
Q Consensus 278 ~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl 308 (693)
...|..++||+||..++.|.+.|.|.+--+
T Consensus 256 -~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ 285 (737)
T KOG1524|consen 256 -VGSIFNLSWSADGTQATCGTSTGQLIVAYA 285 (737)
T ss_pred -ccceEEEEEcCCCceeeccccCceEEEeee
Confidence 115999999999999999999998765443
No 182
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.59 E-value=3.4e-14 Score=136.84 Aligned_cols=243 Identities=16% Similarity=0.211 Sum_probs=162.2
Q ss_pred cceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 005502 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (693)
Q Consensus 41 ~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~ 120 (693)
.+...|++|.+.|+|+.|-.++. |.+|..-|.|++|++.+...+..+...|...|+.+.-.|+ ..+.+-+.|+.+.
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~---d~l~tqgRd~~L~ 80 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN---DSLDTQGRDPLLI 80 (323)
T ss_pred CCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC---cchhhcCCCceEE
Confidence 45678899999999999988765 8899999999999999998888775467889999999986 5788889999999
Q ss_pred EEEcCCCCCCCC------------------CCCC-----------CC--------Ccee------eccCCCCeEEEEEec
Q 005502 121 LFNLSRFSGRGL------------------DDNA-----------IT--------PSAL------YQCHTRRVKKLAVEV 157 (693)
Q Consensus 121 vwdl~~~~~~~~------------------~~~~-----------~~--------~~~~------~~~h~~~V~~l~~sp 157 (693)
+|++........ ..+. .+ +..+ -.+..+.|.+..+..
T Consensus 81 lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~ 160 (323)
T KOG0322|consen 81 LWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDH 160 (323)
T ss_pred EEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccc
Confidence 999874210000 0000 00 0000 001234566666543
Q ss_pred CCC--cEEEEEeCCCcEEEEeCCCCCCCC----------CCCCCCcccce-------------------EEEeccC--Cc
Q 005502 158 GNP--HVVWSASEDGTLRQHDFRQGSSCP----------PAGSSHQECRN-------------------ILLDLRC--GA 204 (693)
Q Consensus 158 ~~~--~~l~Sgs~Dg~V~iwDlr~~~~~~----------~~~~~~~~~~~-------------------~l~~~~~--~~ 204 (693)
..+ -++++|-++|.|.+||+.++.... ......+.... +.+.+.. +.
T Consensus 161 ~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gs 240 (323)
T KOG0322|consen 161 ACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGS 240 (323)
T ss_pred cccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCc
Confidence 333 256678889999999999863221 00011111111 1111111 11
Q ss_pred eeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEE
Q 005502 205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH 284 (693)
Q Consensus 205 ~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~ 284 (693)
...-....-....+..+.+-|+ ++.+||++.|+.||+|.-+++.++..+ .-|.. .|++
T Consensus 241 lq~~~e~~lknpGv~gvrIRpD-~KIlATAGWD~RiRVyswrtl~pLAVL--------------------kyHsa-gvn~ 298 (323)
T KOG0322|consen 241 LQIRKEITLKNPGVSGVRIRPD-GKILATAGWDHRIRVYSWRTLNPLAVL--------------------KYHSA-GVNA 298 (323)
T ss_pred ccccceEEecCCCccceEEccC-CcEEeecccCCcEEEEEeccCCchhhh--------------------hhhhc-ceeE
Confidence 1000011112235667888897 699999999999999999998776433 12443 6999
Q ss_pred EEEcCCCCEEEEEecCCcEEEEECC
Q 005502 285 VTFSPNGEEVLLSYSGEHVYLMDVN 309 (693)
Q Consensus 285 v~fspdg~~L~sgs~Dg~V~lwDl~ 309 (693)
++|+|+...+++++.|+.|-+|++.
T Consensus 299 vAfspd~~lmAaaskD~rISLWkLY 323 (323)
T KOG0322|consen 299 VAFSPDCELMAAASKDARISLWKLY 323 (323)
T ss_pred EEeCCCCchhhhccCCceEEeeecC
Confidence 9999999999999999999999973
No 183
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.59 E-value=1.3e-13 Score=143.19 Aligned_cols=281 Identities=14% Similarity=0.177 Sum_probs=195.3
Q ss_pred EEeccCCCcEEEEEECCCCCEEEEEeCCC--------cEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEe-
Q 005502 44 RELEGHQGCVNAISWNSKGSLLISGSDDT--------HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA- 114 (693)
Q Consensus 44 ~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg--------~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs- 114 (693)
+.+-||+..|.|+..+|+--++++|-.-| .|+|||..+-..+..+ ......|+||+|++.+.|.++....
T Consensus 98 r~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~-g~f~~GV~~vaFsk~~~G~~l~~vD~ 176 (626)
T KOG2106|consen 98 RHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVI-GFFDRGVTCVAFSKINGGSLLCAVDD 176 (626)
T ss_pred ccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeee-ccccccceeeeecccCCCceEEEecC
Confidence 34568999999999999988899886555 4999998888788877 4566789999999987677776653
Q ss_pred -CCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCC--------
Q 005502 115 -GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP-------- 185 (693)
Q Consensus 115 -~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~-------- 185 (693)
.+..+.|||.... ......++....|....|+|.+++++++++. |.+.+|+.+.+.....
T Consensus 177 s~~h~lSVWdWqk~----------~~~~~vk~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~e 245 (626)
T KOG2106|consen 177 SNPHMLSVWDWQKK----------AKLGPVKTSNEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQGIFEKRE 245 (626)
T ss_pred CCccccchhhchhh----------hccCcceeccceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEEeecccccc
Confidence 3556889999864 2234445556788889999999999988886 8999999887643211
Q ss_pred --------------CCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCC
Q 005502 186 --------------AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL 251 (693)
Q Consensus 186 --------------~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~ 251 (693)
..++...+...+|+........ ....|...|.+++.-.+ + .|++|+.|..|..|| ...+.+
T Consensus 246 kk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k--~~~aH~ggv~~L~~lr~-G-tllSGgKDRki~~Wd-~~y~k~ 320 (626)
T KOG2106|consen 246 KKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISK--QVHAHDGGVFSLCMLRD-G-TLLSGGKDRKIILWD-DNYRKL 320 (626)
T ss_pred ceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEe--EeeecCCceEEEEEecC-c-cEeecCccceEEecc-cccccc
Confidence 1122233344555554333221 11267888999999886 4 566699999999999 444443
Q ss_pred cccccCCCCCCcccccccCc----------------------cccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECC
Q 005502 252 TSCQKRMSPPPCVNYFCPMH----------------------LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 309 (693)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~----------------------~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~ 309 (693)
+....+... ..++...+.+ +...+|.. ..+.++.+|+...+++++.|++|+||+
T Consensus 321 r~~elPe~~-G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~d-elwgla~hps~~q~~T~gqdk~v~lW~-- 396 (626)
T KOG2106|consen 321 RETELPEQF-GPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGD-ELWGLATHPSKNQLLTCGQDKHVRLWN-- 396 (626)
T ss_pred ccccCchhc-CCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEeccc-ceeeEEcCCChhheeeccCcceEEEcc--
Confidence 333222111 1111111111 11134555 588999999999999999999999999
Q ss_pred CCCcceEEeecCCCceeEEeccCCCcccccCCcccccc
Q 005502 310 HAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQ 347 (693)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~ 347 (693)
..++.......++.....|+|.. -++.....+..+.
T Consensus 397 -~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V 432 (626)
T KOG2106|consen 397 -DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFV 432 (626)
T ss_pred -CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEE
Confidence 34566666678888999999987 5555555555544
No 184
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=7.8e-14 Score=137.44 Aligned_cols=215 Identities=16% Similarity=0.199 Sum_probs=152.0
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCC
Q 005502 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 127 (693)
Q Consensus 48 gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~ 127 (693)
.|.-.|..+-....+.+|+|++.|..|.||++. |+.+..+ ......-+..+.+|+ |++|++++..-.|+||.+--.
T Consensus 185 kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~i-dtnq~~n~~aavSP~--GRFia~~gFTpDVkVwE~~f~ 260 (420)
T KOG2096|consen 185 KHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSI-DTNQSSNYDAAVSPD--GRFIAVSGFTPDVKVWEPIFT 260 (420)
T ss_pred hcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeee-ccccccccceeeCCC--CcEEEEecCCCCceEEEEEec
Confidence 466777778888889999999999999999998 8899888 445556677889999 799999999999999987532
Q ss_pred -CCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCcee
Q 005502 128 -SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206 (693)
Q Consensus 128 -~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 206 (693)
.+.. .....+..+++|...|..++|+| +...++|.+.||++++||+.-.-... ++ .. -++.+. .
T Consensus 261 kdG~f---qev~rvf~LkGH~saV~~~aFsn-~S~r~vtvSkDG~wriwdtdVrY~~~------qD-pk---~Lk~g~-~ 325 (420)
T KOG2096|consen 261 KDGTF---QEVKRVFSLKGHQSAVLAAAFSN-SSTRAVTVSKDGKWRIWDTDVRYEAG------QD-PK---ILKEGS-A 325 (420)
T ss_pred cCcch---hhhhhhheeccchhheeeeeeCC-CcceeEEEecCCcEEEeeccceEecC------CC-ch---HhhcCC-c
Confidence 1111 11234677899999999999999 66788899999999999975321000 00 00 011111 0
Q ss_pred eecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEE
Q 005502 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT 286 (693)
Q Consensus 207 ~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~ 286 (693)
++.. . ......++++|. +..||++ ....+.+|..++++.... +. ..|.. .|++|+
T Consensus 326 pl~a--a-g~~p~RL~lsP~-g~~lA~s-~gs~l~~~~se~g~~~~~----------~e---------~~h~~-~Is~is 380 (420)
T KOG2096|consen 326 PLHA--A-GSEPVRLELSPS-GDSLAVS-FGSDLKVFASEDGKDYPE----------LE---------DIHST-TISSIS 380 (420)
T ss_pred chhh--c-CCCceEEEeCCC-CcEEEee-cCCceEEEEcccCccchh----------HH---------HhhcC-ceeeEE
Confidence 1111 1 122338999997 6666654 456899999988754422 21 11333 599999
Q ss_pred EcCCCCEEEEEecCCcEEEEE
Q 005502 287 FSPNGEEVLLSYSGEHVYLMD 307 (693)
Q Consensus 287 fspdg~~L~sgs~Dg~V~lwD 307 (693)
|+++|+++++++ |..++++.
T Consensus 381 ~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 381 YSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred ecCCCcEEeeec-ceeeeeec
Confidence 999999988875 66777775
No 185
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.59 E-value=2.5e-13 Score=134.36 Aligned_cols=227 Identities=15% Similarity=0.184 Sum_probs=169.5
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCc---EEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcC
Q 005502 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (693)
Q Consensus 49 H~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~---~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~ 125 (693)
-..+|+|.+|+++++.+|.+-....|.||.....+ ..+++ ..|...|+.|.|.|. .+.|++|+.|..-+||...
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htl-s~Hd~~vtgvdWap~--snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTL-SEHDKIVTGVDWAPK--SNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceeh-hhhCcceeEEeecCC--CCceeEccCCCCccccccC
Confidence 45799999999999999999999999999987554 56677 789999999999999 4799999999999999985
Q ss_pred CCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCce
Q 005502 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (693)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (693)
.+ ..+++...+..|...++++.|+| ..+.|++|+.-..|.+|-+..... -|..
T Consensus 86 ~~-------~~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENd--------------WWVs----- 138 (361)
T KOG1523|consen 86 SG-------GTWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQEND--------------WWVS----- 138 (361)
T ss_pred CC-------CeeccceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecccc--------------eehh-----
Confidence 32 23577788888999999999999 789999999999999998876431 1100
Q ss_pred eeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCcc-ccCCCCccceEE
Q 005502 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL-SEHGRSSLHLTH 284 (693)
Q Consensus 206 ~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~~V~~ 284 (693)
..........|.+++|+|. +-+|++|+.|+..|+|..--. .+ ..+..|.+--..+.-+.+ .+-...+.+|..
T Consensus 139 --KhikkPirStv~sldWhpn-nVLlaaGs~D~k~rVfSayIK-~V---dekpap~pWgsk~PFG~lm~E~~~~ggwvh~ 211 (361)
T KOG1523|consen 139 --KHIKKPIRSTVTSLDWHPN-NVLLAAGSTDGKCRVFSAYIK-GV---DEKPAPTPWGSKMPFGQLMSEASSSGGWVHG 211 (361)
T ss_pred --hhhCCccccceeeeeccCC-cceecccccCcceeEEEEeee-cc---ccCCCCCCCccCCcHHHHHHhhccCCCceee
Confidence 0001122457899999996 689999999999999975411 11 111111111111100111 111234558999
Q ss_pred EEEcCCCCEEEEEecCCcEEEEECCCCC
Q 005502 285 VTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 285 v~fspdg~~L~sgs~Dg~V~lwDl~~~~ 312 (693)
+.|+|+|..|+-.+.|+.|.+-|...+.
T Consensus 212 v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 212 VLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred eEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 9999999999999999999999988864
No 186
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=1.8e-13 Score=143.36 Aligned_cols=182 Identities=22% Similarity=0.305 Sum_probs=131.7
Q ss_pred EeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCce-eeccCCCCeEEEEEecC-CCcEEE
Q 005502 87 SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA-LYQCHTRRVKKLAVEVG-NPHVVW 164 (693)
Q Consensus 87 ~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~-~~~~h~~~V~~l~~sp~-~~~~l~ 164 (693)
.+ .||.+.|.|+.|+.+ |.+|++|+.|-.+.|||.-.. +++. .-.+|...|.++.|-|. +..+++
T Consensus 45 eL-~GH~GCVN~LeWn~d--G~lL~SGSDD~r~ivWd~~~~----------KllhsI~TgHtaNIFsvKFvP~tnnriv~ 111 (758)
T KOG1310|consen 45 EL-TGHTGCVNCLEWNAD--GELLASGSDDTRLIVWDPFEY----------KLLHSISTGHTANIFSVKFVPYTNNRIVL 111 (758)
T ss_pred hh-ccccceecceeecCC--CCEEeecCCcceEEeecchhc----------ceeeeeecccccceeEEeeeccCCCeEEE
Confidence 45 799999999999988 799999999999999999743 3343 34589999999999984 456888
Q ss_pred EEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 005502 165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD 244 (693)
Q Consensus 165 Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD 244 (693)
||+.|..|++||+...+.-. . ..+..........|...|+.|+..|.+++.+.+++.||+||-||
T Consensus 112 sgAgDk~i~lfdl~~~~~~~---~------------d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyD 176 (758)
T KOG1310|consen 112 SGAGDKLIKLFDLDSSKEGG---M------------DHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYD 176 (758)
T ss_pred eccCcceEEEEecccccccc---c------------ccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeec
Confidence 99999999999998643110 0 01111222333456778899999999889999999999999999
Q ss_pred cCCCCCCcccccCC-CCCCcccccccCccccCCCCccceEEEEEcCCCC-EEEEEecCCcEEEEEC
Q 005502 245 RRMLPPLTSCQKRM-SPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDV 308 (693)
Q Consensus 245 ~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~-~L~sgs~Dg~V~lwDl 308 (693)
+|.... +.... .+..|+. +.+. + ....+++++|... +|++|+.|-.++|||.
T Consensus 177 iREph~---c~p~~~~~~~l~n-y~~~-l-------ielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 177 IREPHV---CNPDEDCPSILVN-YNPQ-L-------IELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred ccCCcc---CCccccccHHHHH-hchh-h-------heeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 996431 11101 1111111 1111 1 1368899999764 6778888999999994
No 187
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=2.9e-14 Score=145.86 Aligned_cols=202 Identities=21% Similarity=0.276 Sum_probs=146.2
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCC
Q 005502 54 NAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD 133 (693)
Q Consensus 54 ~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~ 133 (693)
.+++|+.+|..|++|+.||++|||++.+...+... ..|.+.|.++.|+|+ +.+|++-+.| ..+||++..+..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e-~~~~~eV~DL~FS~d--gk~lasig~d-~~~VW~~~~g~~---- 219 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEE-IAHHAEVKDLDFSPD--GKFLASIGAD-SARVWSVNTGAA---- 219 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhh-HhhcCccccceeCCC--CcEEEEecCC-ceEEEEeccCch----
Confidence 68999999999999999999999998888777776 689999999999999 6999999999 999999997521
Q ss_pred CCCCCCceee--ccCCCCeEEEEEecCC--Cc--EEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceee
Q 005502 134 DNAITPSALY--QCHTRRVKKLAVEVGN--PH--VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (693)
Q Consensus 134 ~~~~~~~~~~--~~h~~~V~~l~~sp~~--~~--~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 207 (693)
+... ..-......+.|..++ +. +++....-+.|++||+...+.- ....
T Consensus 220 ------~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~--------------------~~l~ 273 (398)
T KOG0771|consen 220 ------LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS--------------------NFLR 273 (398)
T ss_pred ------hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc--------------------cccc
Confidence 1111 1122344555665522 12 2333334567788877544311 0001
Q ss_pred ecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEE
Q 005502 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 287 (693)
Q Consensus 208 l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~f 287 (693)
..........|++++++++ |+++|.|+.||.|-||+..+.+ +++++... |.. .||.|+|
T Consensus 274 ~~~~~~~~~siSsl~VS~d-Gkf~AlGT~dGsVai~~~~~lq-------------~~~~vk~a------H~~-~VT~ltF 332 (398)
T KOG0771|consen 274 LRKKIKRFKSISSLAVSDD-GKFLALGTMDGSVAIYDAKSLQ-------------RLQYVKEA------HLG-FVTGLTF 332 (398)
T ss_pred hhhhhhccCcceeEEEcCC-CcEEEEeccCCcEEEEEeceee-------------eeEeehhh------hee-eeeeEEE
Confidence 1111122347899999997 7999999999999999998763 34444333 333 5999999
Q ss_pred cCCCCEEEEEecCCcEEEEECCC
Q 005502 288 SPNGEEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 288 spdg~~L~sgs~Dg~V~lwDl~~ 310 (693)
+|+.+++++-+.+..+.|..+.-
T Consensus 333 ~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 333 SPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred cCCcCcccccccCCceeEEEEee
Confidence 99999999999998888877654
No 188
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=6e-15 Score=155.86 Aligned_cols=113 Identities=19% Similarity=0.145 Sum_probs=106.0
Q ss_pred hhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcc
Q 005502 363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR 442 (693)
Q Consensus 363 a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~K 442 (693)
+.+++++||.+|..|+ |..||.+|++||.+.|.+ |++|+||.+||.+++ +|.+|+.|+.++++|+|.++|
T Consensus 2 a~e~k~kgnaa~s~~d-~~~ai~~~t~ai~l~p~n------hvlySnrsaa~a~~~---~~~~al~da~k~~~l~p~w~k 71 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGD-FETAIRLFTEAIMLSPTN------HVLYSNRSAAYASLG---SYEKALKDATKTRRLNPDWAK 71 (539)
T ss_pred hhHHHHHHHhhccccc-HHHHHHHHHHHHccCCCc------cchhcchHHHHHHHh---hHHHHHHHHHHHHhcCCchhh
Confidence 5678999999999999 999999999999999988 999999999999965 499999999999999999999
Q ss_pred hhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHHHH
Q 005502 443 AHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIK 485 (693)
Q Consensus 443 A~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l~ 485 (693)
+|+|+|-|++.||+|++|+..|...++.+|+|+.....+....
T Consensus 72 gy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 72 GYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 9999999999999999999999999999999988776666655
No 189
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.57 E-value=2.2e-13 Score=134.70 Aligned_cols=214 Identities=18% Similarity=0.269 Sum_probs=152.4
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEECCCC------------cEEEEeccCCCcceEEEEEe-------eCCCCCEEEE
Q 005502 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSR------------KLLHSIETGHSANVFCTKFV-------PETSDELVVS 112 (693)
Q Consensus 52 ~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~------------~~~~~l~~~h~~~I~sl~f~-------p~~~~~~l~s 112 (693)
-...+.|+|||+.|++-+.|..+.+|++... +...++.......|.+.+|- |+ ..++++
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~--t~l~a~ 128 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPS--TNLFAV 128 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCc--cceeee
Confidence 3456899999999999999999999998521 11122222345678888887 44 379999
Q ss_pred EeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCC---eEEEEEecCCCcEEEEEeCCCcEEEEeC-CCCCCCCCCCC
Q 005502 113 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR---VKKLAVEVGNPHVVWSASEDGTLRQHDF-RQGSSCPPAGS 188 (693)
Q Consensus 113 gs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~---V~~l~~sp~~~~~l~Sgs~Dg~V~iwDl-r~~~~~~~~~~ 188 (693)
.+.+.-|++||.-+++.+. ....-.|... ..+++|+|++ ..|+ ++...+|++||+ |.+..++.-..
T Consensus 129 ssr~~PIh~wdaftG~lra--------Sy~~ydh~de~taAhsL~Fs~DG-eqlf-aGykrcirvFdt~RpGr~c~vy~t 198 (406)
T KOG2919|consen 129 SSRDQPIHLWDAFTGKLRA--------SYRAYDHQDEYTAAHSLQFSPDG-EQLF-AGYKRCIRVFDTSRPGRDCPVYTT 198 (406)
T ss_pred ccccCceeeeecccccccc--------chhhhhhHHhhhhheeEEecCCC-CeEe-ecccceEEEeeccCCCCCCcchhh
Confidence 9999999999998764322 1111124433 4679999955 4553 567799999999 66664421110
Q ss_pred CCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccc
Q 005502 189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFC 268 (693)
Q Consensus 189 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~ 268 (693)
+ . ....+....+.|++|+|.+...+++|+....+-||.-....|+..+
T Consensus 199 --------~---~-------~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~ll-------------- 246 (406)
T KOG2919|consen 199 --------V---T-------KGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLL-------------- 246 (406)
T ss_pred --------h---h-------cccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeee--------------
Confidence 0 0 0112345578899999998889999999999999887665443222
Q ss_pred cCccccCCCCccceEEEEEcCCCCEEEEEec-CCcEEEEECCCCCcceE
Q 005502 269 PMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGRAM 316 (693)
Q Consensus 269 ~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~-Dg~V~lwDl~~~~~~~~ 316 (693)
.+|.+ .||.+.|.++|+.|++|.. |..|..||++....+..
T Consensus 247 ------ggh~g-GvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~ 288 (406)
T KOG2919|consen 247 ------GGHGG-GVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVY 288 (406)
T ss_pred ------cccCC-CeeeEEeccCcCeecccccCCCeEEEEeehhccchhh
Confidence 35555 6999999999999999998 88999999998654433
No 190
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=2.8e-13 Score=133.18 Aligned_cols=219 Identities=15% Similarity=0.167 Sum_probs=149.9
Q ss_pred EEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEe-cCCCcEE
Q 005502 85 LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE-VGNPHVV 163 (693)
Q Consensus 85 ~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-p~~~~~l 163 (693)
+..|..+|.+-|.++.|.+. |+.+|||+.|++|+|||.+..++ .+.....+.+|.+.|..|.|. |.-++.+
T Consensus 5 ~~pi~s~h~DlihdVs~D~~--GRRmAtCSsDq~vkI~d~~~~s~------~W~~Ts~Wrah~~Si~rV~WAhPEfGqvv 76 (361)
T KOG2445|consen 5 MAPIDSGHKDLIHDVSFDFY--GRRMATCSSDQTVKIWDSTSDSG------TWSCTSSWRAHDGSIWRVVWAHPEFGQVV 76 (361)
T ss_pred ccccccCCcceeeeeeeccc--CceeeeccCCCcEEEEeccCCCC------ceEEeeeEEecCCcEEEEEecCccccceE
Confidence 34566789999999999998 79999999999999999875443 346677889999999999995 5567899
Q ss_pred EEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCC-CcEEEEEeCCCcEEE
Q 005502 164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARL 242 (693)
Q Consensus 164 ~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~-~~~Latgs~Dg~I~l 242 (693)
++++.|+++.||.=.... .++...-| ............|+.+.|.|.. |-.||+++.||++||
T Consensus 77 A~cS~Drtv~iWEE~~~~---------~~~~~~~W-------v~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRI 140 (361)
T KOG2445|consen 77 ATCSYDRTVSIWEEQEKS---------EEAHGRRW-------VRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRI 140 (361)
T ss_pred EEEecCCceeeeeecccc---------ccccccee-------EEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEE
Confidence 999999999999743211 01101111 1112222345679999999953 567899999999999
Q ss_pred EecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCC---CCEEEEEecC-----CcEEEEECCCCCc-
Q 005502 243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN---GEEVLLSYSG-----EHVYLMDVNHAGG- 313 (693)
Q Consensus 243 wD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspd---g~~L~sgs~D-----g~V~lwDl~~~~~- 313 (693)
|+....-.+..+.... .+..... ..+....+..+|.|+|. ..+|++|+.+ +.++||.......
T Consensus 141 YEA~dp~nLs~W~Lq~-------Ei~~~~~-pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rK 212 (361)
T KOG2445|consen 141 YEAPDPMNLSQWTLQH-------EIQNVID-PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRK 212 (361)
T ss_pred EecCCccccccchhhh-------hhhhccC-CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcce
Confidence 9987655444332110 0000000 01122225789999975 3677777765 4899998876542
Q ss_pred ---ceEEeecCCCceeEEeccCCCc
Q 005502 314 ---RAMRYTVGDASKIMSFTPTLNG 335 (693)
Q Consensus 314 ---~~~~~~~~~~~~~~~~~p~~~g 335 (693)
...+..+.++++.++|.|....
T Consensus 213 w~kva~L~d~~dpI~di~wAPn~Gr 237 (361)
T KOG2445|consen 213 WLKVAELPDHTDPIRDISWAPNIGR 237 (361)
T ss_pred eeeehhcCCCCCcceeeeeccccCC
Confidence 2223466788999999997543
No 191
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=1.6e-13 Score=153.21 Aligned_cols=265 Identities=15% Similarity=0.245 Sum_probs=186.4
Q ss_pred CCCCCcCcchhhhhcccccCCC----CCcCcccccchhhhcc---ccceEEe---ccC----CCcEEEEEECCCCCEEEE
Q 005502 2 ENFPFHDGSIYDMLDTRHTDTR----PDVNHSLQMHSSLVRR---LSQEREL---EGH----QGCVNAISWNSKGSLLIS 67 (693)
Q Consensus 2 ~~~~~~~~~~~~~l~~r~~~~~----~~~~~~l~~~~~~i~~---l~~~~~l---~gH----~~~V~~l~~s~~g~~LaS 67 (693)
+|=.|.+.+++++...++.+.. ..-+..+++|+.+... .+++.-. .++ .+.=.-+.|.....+|++
T Consensus 1103 ~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~ 1182 (1387)
T KOG1517|consen 1103 DNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLV 1182 (1387)
T ss_pred cCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEe
Confidence 4455667777777777776654 4456788899876654 3333222 222 222234678886556666
Q ss_pred EeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCC
Q 005502 68 GSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHT 147 (693)
Q Consensus 68 gs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~ 147 (693)
+++-..|+|||....+++..+..+....|+++.-.-.. |++|++|..||.|++||.+..... ..+..+..|+
T Consensus 1183 tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~-gn~i~AGfaDGsvRvyD~R~a~~d-------s~v~~~R~h~ 1254 (1387)
T KOG1517|consen 1183 TGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVH-GNIIAAGFADGSVRVYDRRMAPPD-------SLVCVYREHN 1254 (1387)
T ss_pred cCCeeEEEEEecccceeEeecccCCCccceeecccccC-CceEEEeecCCceEEeecccCCcc-------ccceeecccC
Confidence 66678999999999999998877777788888766554 789999999999999999975432 3577888898
Q ss_pred CC--eEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcC
Q 005502 148 RR--VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS 225 (693)
Q Consensus 148 ~~--V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp 225 (693)
.. |..+.+.+.+-..|++|+.||.|++||+|..... ... .+.........++++.+++
T Consensus 1255 ~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e------------~~~--------~iv~~~~yGs~lTal~VH~ 1314 (1387)
T KOG1517|consen 1255 DVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKE------------TFL--------TIVAHWEYGSALTALTVHE 1314 (1387)
T ss_pred CcccceeEEeecCCCcceeeeccCCeEEEEecccCccc------------ccc--------eeeeccccCccceeeeecc
Confidence 87 9999999855556889999999999999985211 000 0001111122588999999
Q ss_pred CCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEE
Q 005502 226 TRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYL 305 (693)
Q Consensus 226 ~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~l 305 (693)
. ..++|+|+. +.|+||++... .+..+. ..+.. -+.....+++++|+|---.|++|+.|..|.|
T Consensus 1315 h-apiiAsGs~-q~ikIy~~~G~-~l~~~k-----------~n~~F---~~q~~gs~scL~FHP~~~llAaG~~Ds~V~i 1377 (1387)
T KOG1517|consen 1315 H-APIIASGSA-QLIKIYSLSGE-QLNIIK-----------YNPGF---MGQRIGSVSCLAFHPHRLLLAAGSADSTVSI 1377 (1387)
T ss_pred C-CCeeeecCc-ceEEEEecChh-hhcccc-----------cCccc---ccCcCCCcceeeecchhHhhhhccCCceEEE
Confidence 7 568999988 99999998632 222221 11111 1223336899999999999999999999999
Q ss_pred EECCCC
Q 005502 306 MDVNHA 311 (693)
Q Consensus 306 wDl~~~ 311 (693)
|....+
T Consensus 1378 Ys~~k~ 1383 (1387)
T KOG1517|consen 1378 YSCEKP 1383 (1387)
T ss_pred eecCCc
Confidence 987764
No 192
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.56 E-value=6.6e-14 Score=142.25 Aligned_cols=214 Identities=17% Similarity=0.263 Sum_probs=151.8
Q ss_pred CCcEEEEEECCCCC-EEEEEeCCCcEEEEECCCCc---------EEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 005502 50 QGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRK---------LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (693)
Q Consensus 50 ~~~V~~l~~s~~g~-~LaSgs~Dg~I~IWd~~~~~---------~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V 119 (693)
..+|.++.|.++.. .||||+.|..|+||-+..+. .+..+ ..|...|++|.|+|+ |.+|++|+.+|.|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~L-s~H~~aVN~vRf~p~--gelLASg~D~g~v 89 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSL-SRHTRAVNVVRFSPD--GELLASGGDGGEV 89 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecc-cCCcceeEEEEEcCC--cCeeeecCCCceE
Confidence 46899999999766 99999999999999876432 23344 789999999999999 7999999999999
Q ss_pred EEEEcCCCCC------CCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCccc
Q 005502 120 RLFNLSRFSG------RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 193 (693)
Q Consensus 120 ~vwdl~~~~~------~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~ 193 (693)
.+|-...-.. .......+...+.+.+|...|..++|+| +++++++++.|.++++||+..+...
T Consensus 90 ~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l~---------- 158 (434)
T KOG1009|consen 90 FLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQLL---------- 158 (434)
T ss_pred EEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccceeE----------
Confidence 9998762100 0001122344566778999999999999 6789999999999999999987622
Q ss_pred ceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCccccc--------CCCCCCccc
Q 005502 194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK--------RMSPPPCVN 265 (693)
Q Consensus 194 ~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~--------~~~~~~~~~ 265 (693)
.....|...+.-++|.|- ++++++=+.|...+.+.+...+.+..... ........+
T Consensus 159 ---------------~~~~dh~~yvqgvawDpl-~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~r 222 (434)
T KOG1009|consen 159 ---------------AILDDHEHYVQGVAWDPL-NQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTR 222 (434)
T ss_pred ---------------eeccccccccceeecchh-hhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceee
Confidence 223356667888999997 68888888888777777664433222110 011111222
Q ss_pred ccccCccccCCCCccceEEEEEcCCCCEEEEEec
Q 005502 266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS 299 (693)
Q Consensus 266 ~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~ 299 (693)
.|....+. .-...++|+|+|.+|++..+
T Consensus 223 LfhDeTlk------sFFrRlsfTPdG~llvtPag 250 (434)
T KOG1009|consen 223 LFHDETLK------SFFRRLSFTPDGSLLVTPAG 250 (434)
T ss_pred eeecCchh------hhhhhcccCCCCcEEEcccc
Confidence 22111111 13566899999999998765
No 193
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.55 E-value=4.8e-14 Score=149.42 Aligned_cols=204 Identities=18% Similarity=0.256 Sum_probs=144.4
Q ss_pred CCcEEEEEECC-CCCEEEEEeCCCcEEEEECCCC-------cEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 005502 50 QGCVNAISWNS-KGSLLISGSDDTHINVWSYSSR-------KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 121 (693)
Q Consensus 50 ~~~V~~l~~s~-~g~~LaSgs~Dg~I~IWd~~~~-------~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~v 121 (693)
...|+.+.|+| |...||++++||.|+||.+..+ .....+ +.|...|+++.|+|-. .+.|++++.|.+|++
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~l-t~h~eKI~slRfHPLA-advLa~asyd~Ti~l 704 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKIL-TIHGEKITSLRFHPLA-ADVLAVASYDSTIEL 704 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceee-ecccceEEEEEecchh-hhHhhhhhccceeee
Confidence 45799999999 7889999999999999998754 233344 7899999999999986 679999999999999
Q ss_pred EEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEecc
Q 005502 122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR 201 (693)
Q Consensus 122 wdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~ 201 (693)
||+... .....+.+|++.|..++|+| ++..++|.+.||+|++|.-|+.......+.+..
T Consensus 705 WDl~~~----------~~~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpv---------- 763 (1012)
T KOG1445|consen 705 WDLANA----------KLYSRLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSREQPVYEGKGPV---------- 763 (1012)
T ss_pred eehhhh----------hhhheeccCcCceeEEEECC-CCcceeeeecCceEEEeCCCCCCCccccCCCCc----------
Confidence 999975 44567889999999999999 779999999999999999988764322111110
Q ss_pred CCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCC----CcEEEEecCCCC--CCcccccCCCCCCcccccccCccccC
Q 005502 202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD----AFARLYDRRMLP--PLTSCQKRMSPPPCVNYFCPMHLSEH 275 (693)
Q Consensus 202 ~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~D----g~I~lwD~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (693)
...-..|.|--+ ++++++.+.| ..|.+||..+.. ++........|
T Consensus 764 -------------gtRgARi~wacd-gr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvap--------------- 814 (1012)
T KOG1445|consen 764 -------------GTRGARILWACD-GRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAP--------------- 814 (1012)
T ss_pred -------------cCcceeEEEEec-CcEEEEecccccchhhhhhhhhhhccCCcceeeeecccC---------------
Confidence 012234455554 5666665544 457788876543 11111000000
Q ss_pred CCCccceEEEEEcCCCC-EEEEEecCCcEEEEECCC
Q 005502 276 GRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 276 ~h~~~~V~~v~fspdg~-~L~sgs~Dg~V~lwDl~~ 310 (693)
.+.--.+.+|.. .+++|-+|..|++|.+-.
T Consensus 815 -----s~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 815 -----SPLVPHYDYDSNVLFLTGKGDRFVNMYEVIY 845 (1012)
T ss_pred -----ccccccccCCCceEEEecCCCceEEEEEecC
Confidence 011112344544 456777899999999876
No 194
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=1e-12 Score=125.31 Aligned_cols=220 Identities=15% Similarity=0.182 Sum_probs=147.2
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEECCC---------CcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 005502 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSS---------RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 121 (693)
Q Consensus 51 ~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~---------~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~v 121 (693)
..|.+-+|+|.+++|+.|+.+|.|.+..+.+ ++....-..+|.++|..++|.. .+|++|+ ||.|+-
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d----~~Lls~g-dG~V~g 85 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD----DFLLSGG-DGLVYG 85 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh----hheeecc-CceEEE
Confidence 3567778999999999999999999998863 2222222379999999999983 4677775 599999
Q ss_pred EEcCCCCCCCCCCCC---CCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEE
Q 005502 122 FNLSRFSGRGLDDNA---ITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (693)
Q Consensus 122 wdl~~~~~~~~~~~~---~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~ 198 (693)
|..+......-.... ..|.++-...-..|+++...|..+.+| .++.|+.++.||+.+++.
T Consensus 86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~-~AgGD~~~y~~dlE~G~i---------------- 148 (325)
T KOG0649|consen 86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL-FAGGDGVIYQVDLEDGRI---------------- 148 (325)
T ss_pred eeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE-EecCCeEEEEEEecCCEE----------------
Confidence 988743210000000 011111111234689999999666555 556899999999998762
Q ss_pred eccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCC
Q 005502 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (693)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 278 (693)
.....+|+..|.++.--.. ...+++|+.||++|+||.++.+.+..+.. ...+.|+ +.|-
T Consensus 149 ---------~r~~rGHtDYvH~vv~R~~-~~qilsG~EDGtvRvWd~kt~k~v~~ie~-yk~~~~l----------Rp~~ 207 (325)
T KOG0649|consen 149 ---------QREYRGHTDYVHSVVGRNA-NGQILSGAEDGTVRVWDTKTQKHVSMIEP-YKNPNLL----------RPDW 207 (325)
T ss_pred ---------EEEEcCCcceeeeeeeccc-CcceeecCCCccEEEEeccccceeEEecc-ccChhhc----------Cccc
Confidence 1233477888888887443 34799999999999999999875544422 1111222 2234
Q ss_pred ccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceE
Q 005502 279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM 316 (693)
Q Consensus 279 ~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~ 316 (693)
+.+|.+++-+. .+|+ +++...+.||.+++.+...+
T Consensus 208 g~wigala~~e--dWlv-CGgGp~lslwhLrsse~t~v 242 (325)
T KOG0649|consen 208 GKWIGALAVNE--DWLV-CGGGPKLSLWHLRSSESTCV 242 (325)
T ss_pred CceeEEEeccC--ceEE-ecCCCceeEEeccCCCceEE
Confidence 44677777654 4554 55667899999999664433
No 195
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.50 E-value=1.8e-12 Score=147.11 Aligned_cols=233 Identities=18% Similarity=0.186 Sum_probs=160.1
Q ss_pred ccccceEEeccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEECCCC-------cEEEEeccCCCcceEEEEEeeCCCCCE
Q 005502 38 RRLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSR-------KLLHSIETGHSANVFCTKFVPETSDEL 109 (693)
Q Consensus 38 ~~l~~~~~l~gH~~~V~~l~~s~~-g~~LaSgs~Dg~I~IWd~~~~-------~~~~~l~~~h~~~I~sl~f~p~~~~~~ 109 (693)
-++.+++.|..|...|+.++.++. +.+++|||+||+|+||+.... +...++ ......+.++.+++. ++.
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~lty-s~~~sr~~~vt~~~~--~~~ 1112 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTY-SPEGSRVEKVTMCGN--GDQ 1112 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEE-eccCCceEEEEeccC--CCe
Confidence 456778899999999999999885 499999999999999998632 223333 235678999999998 689
Q ss_pred EEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCC-CC-eEEEEEecCCCc-EEEEEeCCCcEEEEeCCCCCCCCCC
Q 005502 110 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHT-RR-VKKLAVEVGNPH-VVWSASEDGTLRQHDFRQGSSCPPA 186 (693)
Q Consensus 110 l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~-~~-V~~l~~sp~~~~-~l~Sgs~Dg~V~iwDlr~~~~~~~~ 186 (693)
+|.++.||.|++.++........ ..........+. +. |..-++...... .++.+..-+.|..||+|+.+..
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~---~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~--- 1186 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKR---VATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA--- 1186 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccc---eeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH---
Confidence 99999999999999986311110 001111122222 22 333344433333 7778888899999999986522
Q ss_pred CCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccc
Q 005502 187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266 (693)
Q Consensus 187 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~ 266 (693)
|.+. .+...+.|++++++|. ++++++|...|.+.+||+|-..++.++..+.
T Consensus 1187 -----------w~lk---------~~~~hG~vTSi~idp~-~~WlviGts~G~l~lWDLRF~~~i~sw~~P~-------- 1237 (1431)
T KOG1240|consen 1187 -----------WRLK---------NQLRHGLVTSIVIDPW-CNWLVIGTSRGQLVLWDLRFRVPILSWEHPA-------- 1237 (1431)
T ss_pred -----------Hhhh---------cCccccceeEEEecCC-ceEEEEecCCceEEEEEeecCceeecccCcc--------
Confidence 1111 1123457999999997 6899999999999999999877766654321
Q ss_pred cccCccccCCCCccceEEEEEcCC---CCEEEE-Ee-cCCcEEEEECCCCCcceEEeec
Q 005502 267 FCPMHLSEHGRSSLHLTHVTFSPN---GEEVLL-SY-SGEHVYLMDVNHAGGRAMRYTV 320 (693)
Q Consensus 267 ~~~~~~~~~~h~~~~V~~v~fspd---g~~L~s-gs-~Dg~V~lwDl~~~~~~~~~~~~ 320 (693)
. .+|+.|..+|- ....++ ++ ..+.|-+|++.++.+..++...
T Consensus 1238 -----------~-~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1238 -----------R-APIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWAS 1284 (1431)
T ss_pred -----------c-CCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcC
Confidence 1 14666666653 334444 44 4789999999998655555544
No 196
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.50 E-value=2e-13 Score=144.71 Aligned_cols=202 Identities=15% Similarity=0.175 Sum_probs=151.8
Q ss_pred CCCCEEEE--EeCCCcEEEEECCCCc-----EEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCC
Q 005502 60 SKGSLLIS--GSDDTHINVWSYSSRK-----LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL 132 (693)
Q Consensus 60 ~~g~~LaS--gs~Dg~I~IWd~~~~~-----~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~ 132 (693)
.+..++|+ .+.-|.|-||++...- .+-.+ -....|+++.|.|.. .+.|+.++.||.|++|.+.....
T Consensus 589 an~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l--~Ngt~vtDl~WdPFD-~~rLAVa~ddg~i~lWr~~a~gl--- 662 (1012)
T KOG1445|consen 589 ANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGL--FNGTLVTDLHWDPFD-DERLAVATDDGQINLWRLTANGL--- 662 (1012)
T ss_pred eccceEEEEecCCCceEEEEEcCCCCCCCccccccc--ccCceeeecccCCCC-hHHeeecccCceEEEEEeccCCC---
Confidence 34455554 3556899999997532 22233 245689999999985 78999999999999999986432
Q ss_pred CCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCC
Q 005502 133 DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPP 212 (693)
Q Consensus 133 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~ 212 (693)
..+...+...+..|...|++|.|+|--.++|++++.|-+|++||+++.... ....
T Consensus 663 ~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~-------------------------~~l~ 717 (1012)
T KOG1445|consen 663 PENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLY-------------------------SRLV 717 (1012)
T ss_pred CcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhh-------------------------heec
Confidence 223446778889999999999999988889999999999999999987521 2233
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCC
Q 005502 213 KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE 292 (693)
Q Consensus 213 ~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~ 292 (693)
+|+..|..++|||+ |+.+|+.|.||+|++|..++...- +... .+..+..--.|.|.-+|+
T Consensus 718 gHtdqIf~~AWSpd-Gr~~AtVcKDg~~rVy~Prs~e~p--v~Eg-----------------~gpvgtRgARi~wacdgr 777 (1012)
T KOG1445|consen 718 GHTDQIFGIAWSPD-GRRIATVCKDGTLRVYEPRSREQP--VYEG-----------------KGPVGTRGARILWACDGR 777 (1012)
T ss_pred cCcCceeEEEECCC-CcceeeeecCceEEEeCCCCCCCc--cccC-----------------CCCccCcceeEEEEecCc
Confidence 68889999999997 799999999999999999876421 0000 011111234688999999
Q ss_pred EEEEEecC----CcEEEEECCCCC
Q 005502 293 EVLLSYSG----EHVYLMDVNHAG 312 (693)
Q Consensus 293 ~L~sgs~D----g~V~lwDl~~~~ 312 (693)
++++.+.| .+|.+||..+-.
T Consensus 778 ~viv~Gfdk~SeRQv~~Y~Aq~l~ 801 (1012)
T KOG1445|consen 778 IVIVVGFDKSSERQVQMYDAQTLD 801 (1012)
T ss_pred EEEEecccccchhhhhhhhhhhcc
Confidence 99888775 478889887743
No 197
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.48 E-value=1.3e-11 Score=124.50 Aligned_cols=217 Identities=19% Similarity=0.292 Sum_probs=149.0
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccC--CCcceEEEEEeeCCCCCEEEEE--eCCCcEEEEEcCC
Q 005502 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG--HSANVFCTKFVPETSDELVVSG--AGDAEVRLFNLSR 126 (693)
Q Consensus 51 ~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~--h~~~I~sl~f~p~~~~~~l~sg--s~Dg~V~vwdl~~ 126 (693)
..|.++.++. ++|+++-.+ .|.|||+.+++.++++... +...+.++.+++. +.+++-= ...|.|.|||..+
T Consensus 88 t~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~--n~ylAyp~s~t~GdV~l~d~~n 162 (391)
T KOG2110|consen 88 TSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNA--NCYLAYPGSTTSGDVVLFDTIN 162 (391)
T ss_pred CceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCC--CceEEecCCCCCceEEEEEccc
Confidence 4666777664 467777665 4999999999999998644 4444544444443 5677643 3468999999986
Q ss_pred CCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCc-EEEEeCCCCCCCCCCCCCCcccceEEEeccCCce
Q 005502 127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT-LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (693)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~-V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (693)
. .++..+.+|.+.+-+|+|+| ++.+|||+++.|+ ||++.+.+++ .++.++-|..
T Consensus 163 l----------~~v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~--------------kl~eFRRG~~ 217 (391)
T KOG2110|consen 163 L----------QPVNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQ--------------KLYEFRRGTY 217 (391)
T ss_pred c----------eeeeEEEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCcc--------------EeeeeeCCce
Confidence 5 67889999999999999999 8899999999996 6899997775 3444454432
Q ss_pred eeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCC----------------CCC------c
Q 005502 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS----------------PPP------C 263 (693)
Q Consensus 206 ~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~----------------~~~------~ 263 (693)
...|.+++|+|+ +.+|++.++.++|.+|.+..... .....+.. |.. .
T Consensus 218 ---------~~~IySL~Fs~d-s~~L~~sS~TeTVHiFKL~~~~~-~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~ 286 (391)
T KOG2110|consen 218 ---------PVSIYSLSFSPD-SQFLAASSNTETVHIFKLEKVSN-NPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQ 286 (391)
T ss_pred ---------eeEEEEEEECCC-CCeEEEecCCCeEEEEEeccccc-CCCCCCCCCCcccchhhhhhhhhcchhhhhhhhh
Confidence 457899999998 68999999999999999875431 11000000 000 0
Q ss_pred ccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCC
Q 005502 264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 264 ~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~ 310 (693)
.+.|...++...++. .+..+.-.+...++.+++.||++|.|.+.-
T Consensus 287 ~R~FAt~~l~~s~~~--~~~~l~~~~~~~~v~vas~dG~~y~y~l~~ 331 (391)
T KOG2110|consen 287 SRKFATAKLPESGRK--NICSLSSIQKIPRVLVASYDGHLYSYRLPP 331 (391)
T ss_pred ccceeEEEccCCCcc--ceEEeeccCCCCEEEEEEcCCeEEEEEcCC
Confidence 011111112221221 233344346889999999999999999876
No 198
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.48 E-value=2.3e-11 Score=130.89 Aligned_cols=229 Identities=26% Similarity=0.405 Sum_probs=164.7
Q ss_pred CcccccchhhhccccceEEeccCC-CcEEEEEE-CCCCC-EEEEEeC-CCcEEEEECCC-CcEEEEeccCCCcceEEEEE
Q 005502 27 NHSLQMHSSLVRRLSQERELEGHQ-GCVNAISW-NSKGS-LLISGSD-DTHINVWSYSS-RKLLHSIETGHSANVFCTKF 101 (693)
Q Consensus 27 ~~~l~~~~~~i~~l~~~~~l~gH~-~~V~~l~~-s~~g~-~LaSgs~-Dg~I~IWd~~~-~~~~~~l~~~h~~~I~sl~f 101 (693)
+..+.+|...... .....+.++. ..+..+.+ ++++. .++..+. |+.+.+|+... ......+ ..|...|.+++|
T Consensus 86 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~ 163 (466)
T COG2319 86 DGTIKLWDLDNGE-KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTL-EGHSESVTSLAF 163 (466)
T ss_pred CCcEEEEEcCCCc-eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEE-ecCcccEEEEEE
Confidence 3445554433222 3556666644 37888888 78777 5555455 99999999987 6666666 789999999999
Q ss_pred eeCCCCCEEEEEeC-CCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 005502 102 VPETSDELVVSGAG-DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180 (693)
Q Consensus 102 ~p~~~~~~l~sgs~-Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~ 180 (693)
+|+ +..+++++. |+.+++|++... ..+..+..|...|.+++|+|.++.++++++.|+.|++||...+
T Consensus 164 ~~~--~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~ 231 (466)
T COG2319 164 SPD--GKLLASGSSLDGTIKLWDLRTG----------KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG 231 (466)
T ss_pred CCC--CCEEEecCCCCCceEEEEcCCC----------ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC
Confidence 999 568888875 999999999863 4577778899999999999855446666699999999987743
Q ss_pred CCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCC
Q 005502 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP 260 (693)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~ 260 (693)
... .. ....|.... -..|+|++ .++++++.|+.+++|+.+....
T Consensus 232 ~~~--------------~~----------~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~---------- 275 (466)
T COG2319 232 KLL--------------RS----------TLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSS---------- 275 (466)
T ss_pred cEE--------------ee----------ecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCc----------
Confidence 311 00 111222222 22799974 7888999999999999986542
Q ss_pred CCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcce
Q 005502 261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRA 315 (693)
Q Consensus 261 ~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~ 315 (693)
++..+ .+| ...|.++.|+|++..+++++.|+.+.+||+.+.....
T Consensus 276 --~~~~~-------~~~-~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 320 (466)
T COG2319 276 --LLRTL-------SGH-SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLS 320 (466)
T ss_pred --EEEEE-------ecC-CccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEE
Confidence 01111 122 2369999999999999998889899999988855333
No 199
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=2.8e-12 Score=143.47 Aligned_cols=217 Identities=16% Similarity=0.308 Sum_probs=152.6
Q ss_pred ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccC--CCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEc
Q 005502 47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG--HSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124 (693)
Q Consensus 47 ~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~--h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl 124 (693)
.+..++-..+.|+|-...++++.+.-.|+|||.+.++++..+..+ ....|+.+++....+..++++|+.||.||||+-
T Consensus 1061 ~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~ 1140 (1387)
T KOG1517|consen 1061 TGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKD 1140 (1387)
T ss_pred hcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecc
Confidence 345556778899998888999887789999999999998877433 346899999998876789999999999999976
Q ss_pred CCCC-CCCCCCCCCCCceeeccC-------CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceE
Q 005502 125 SRFS-GRGLDDNAITPSALYQCH-------TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (693)
Q Consensus 125 ~~~~-~~~~~~~~~~~~~~~~~h-------~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~ 196 (693)
-... ++. +.+..+.+- .+.=.-+.|....+.++++ |.-..|+|||......+
T Consensus 1141 y~~~~~~~------eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~t-Gd~r~IRIWDa~~E~~~------------- 1200 (1387)
T KOG1517|consen 1141 YADKWKKP------ELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVT-GDVRSIRIWDAHKEQVV------------- 1200 (1387)
T ss_pred cccccCCc------eeEEeeccccccCccCCCCCeeeehhhhCCeEEec-CCeeEEEEEecccceeE-------------
Confidence 5432 111 222222211 1111345787766666654 45789999999876533
Q ss_pred EEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCC
Q 005502 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (693)
Q Consensus 197 l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (693)
.++..+ ....+++++-+-..++++++|..||.||+||.|+..+-. .+..+ +.
T Consensus 1201 -~diP~~----------s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds----------~v~~~-------R~ 1252 (1387)
T KOG1517|consen 1201 -ADIPYG----------SSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDS----------LVCVY-------RE 1252 (1387)
T ss_pred -eecccC----------CCccceeecccccCCceEEEeecCCceEEeecccCCccc----------cceee-------cc
Confidence 222211 234567777766668999999999999999999754321 11111 11
Q ss_pred CCc-cceEEEEEcCCCC-EEEEEecCCcEEEEECCCC
Q 005502 277 RSS-LHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHA 311 (693)
Q Consensus 277 h~~-~~V~~v~fspdg~-~L~sgs~Dg~V~lwDl~~~ 311 (693)
|.. .+|..+.+.+.|- .|++|+.+|.|++||++..
T Consensus 1253 h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1253 HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred cCCcccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence 222 1389999999774 5999999999999999984
No 200
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=5e-12 Score=127.53 Aligned_cols=256 Identities=11% Similarity=0.074 Sum_probs=172.3
Q ss_pred cceEEeccC-CCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEecc-CCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 005502 41 SQERELEGH-QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIET-GHSANVFCTKFVPETSDELVVSGAGDAE 118 (693)
Q Consensus 41 ~~~~~l~gH-~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~-~h~~~I~sl~f~p~~~~~~l~sgs~Dg~ 118 (693)
+++.....| ...|.||+|+..+.+|.+|..+++|.+-|+++.+.+..+.. ...+.|..+..+|. ++.|++.+.++.
T Consensus 95 KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~--DN~~~~~t~~~~ 172 (609)
T KOG4227|consen 95 KPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPT--DNTLIVVTRAKL 172 (609)
T ss_pred CCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCC--CceEEEEecCce
Confidence 666666554 48999999999999999999999999999999888877621 23458999999999 689999999999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCC-------CCCCc
Q 005502 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA-------GSSHQ 191 (693)
Q Consensus 119 V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~-------~~~~~ 191 (693)
|.+||++..... +.++. ..........+.|+|..+.+|++.+..+-+-+||+|........ .....
T Consensus 173 V~~~D~Rd~~~~------~~~~~-~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~ 245 (609)
T KOG4227|consen 173 VSFIDNRDRQNP------ISLVL-PANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENT 245 (609)
T ss_pred EEEEeccCCCCC------Cceee-ecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccch
Confidence 999999864311 12222 22244567889999999999999999999999999987643100 00000
Q ss_pred ccc-------------------eEEEeccCCceeeecCCCC-----CccceEEEEEcCCCCcEEEEEeCCCcEEEEecCC
Q 005502 192 ECR-------------------NILLDLRCGAKRSLADPPK-----QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (693)
Q Consensus 192 ~~~-------------------~~l~~~~~~~~~~l~~~~~-----~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~ 247 (693)
+.. -+++++.+.....+..-.. ....+++++|-.+ .-+++|+.+-.|+||.+..
T Consensus 246 ~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D--~~v~tGSD~~~i~~WklP~ 323 (609)
T KOG4227|consen 246 EWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDD--YTVATGSDHWGIHIWKLPR 323 (609)
T ss_pred hhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecc--eeeeccCcccceEEEecCC
Confidence 011 1233333322222221111 1235677888775 4599999999999999875
Q ss_pred CCCCcc---cccCC--CCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCC
Q 005502 248 LPPLTS---CQKRM--SPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 248 ~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~ 310 (693)
...... +.... -|... .+.......+||.. .++.|.|+|....|++++-...++||.-..
T Consensus 324 ~~ds~G~~~IG~~~~~~~~~~--~i~~~~~VLrGHRS-v~NQVRF~~H~~~l~SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 324 ANDSYGFTQIGHDEEEMPSEI--FIEKELTVLRGHRS-VPNQVRFSQHNNLLVSSGVENSFKLWSDHR 388 (609)
T ss_pred CccccCccccCcchhhCchhh--eecceeEEEecccc-cccceeecCCcceEeccchhhheecccccc
Confidence 432211 11100 00000 01111122256776 589999999999988888899999997655
No 201
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=5e-12 Score=139.66 Aligned_cols=225 Identities=12% Similarity=0.097 Sum_probs=143.6
Q ss_pred eEEeccCCCcEEEEEECCCCCEEEEEeCC---CcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEE-eCCCc
Q 005502 43 ERELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSG-AGDAE 118 (693)
Q Consensus 43 ~~~l~gH~~~V~~l~~s~~g~~LaSgs~D---g~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sg-s~Dg~ 118 (693)
.+.+..|...|.+.+|+|+|+.|+.++.+ ..|.+||+.+++..... ...+....++|+|+ ++.|+.+ ..+|.
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~--~~~g~~~~~~wSPD--G~~La~~~~~~g~ 271 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA--SFRGHNGAPAFSPD--GSRLAFASSKDGV 271 (429)
T ss_pred ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe--cCCCccCceeECCC--CCEEEEEEecCCc
Confidence 45677888899999999999999988754 36999999887542211 12223457899999 5777665 46887
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEE
Q 005502 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (693)
Q Consensus 119 V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~ 198 (693)
+.||.+....+ ....+..+...+....|+|++..+++++..+|...+|++...... ..+
T Consensus 272 ~~Iy~~d~~~~---------~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~-----------~~~- 330 (429)
T PRK01742 272 LNIYVMGANGG---------TPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG-----------ASL- 330 (429)
T ss_pred EEEEEEECCCC---------CeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-----------eEE-
Confidence 77765542221 133445566778899999965555556667888999987643211 001
Q ss_pred eccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCC
Q 005502 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (693)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 278 (693)
+ .. .. .+..|+|+ +++|++++.++ +.+||+.+++... .... .
T Consensus 331 ---------l-~~---~~--~~~~~SpD-G~~ia~~~~~~-i~~~Dl~~g~~~~--------------lt~~------~- 372 (429)
T PRK01742 331 ---------V-GG---RG--YSAQISAD-GKTLVMINGDN-VVKQDLTSGSTEV--------------LSST------F- 372 (429)
T ss_pred ---------e-cC---CC--CCccCCCC-CCEEEEEcCCC-EEEEECCCCCeEE--------------ecCC------C-
Confidence 1 00 11 34679997 67787777665 5569987653210 0000 0
Q ss_pred ccceEEEEEcCCCCEEEEEecCCcEEEEECC--CCCcceEEeecCCCceeEEeccC
Q 005502 279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN--HAGGRAMRYTVGDASKIMSFTPT 332 (693)
Q Consensus 279 ~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~--~~~~~~~~~~~~~~~~~~~~~p~ 332 (693)
....+.|+|+|++|+.++.++.+.+|++. ++.....+..+.......+|+|.
T Consensus 373 --~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 373 --LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred --CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 12357899999999999999988888764 33333333333444555667764
No 202
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.5e-13 Score=131.42 Aligned_cols=129 Identities=16% Similarity=0.114 Sum_probs=105.6
Q ss_pred CcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCC-----C-CC------cchhhhhhhHHHHHHhccccCcHHHH
Q 005502 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSG-----I-GP------MLRHECLCIRAALLLKRKWKNDAQMA 426 (693)
Q Consensus 359 ~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~-----~-~~------~~~~~~~~NRA~~~lk~~~~~d~~~A 426 (693)
....+..+.++||++|+.|+ |.+|+.+|.+||....+. + .+ .....||.|-+.|+|+ .||||++
T Consensus 174 Kmkav~~l~q~GN~lfk~~~-ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~---~~e~yev 249 (329)
T KOG0545|consen 174 KMKAVPVLHQEGNRLFKLGR-YKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLK---KEEYYEV 249 (329)
T ss_pred hhhhhHHHHHhhhhhhhhcc-HHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhh---HHHHHHH
Confidence 34456778899999999999 999999999998643211 1 11 2234589999999999 4779999
Q ss_pred HHhHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchh-HHHHHHHHHHHHHH
Q 005502 427 IRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM-AEKVENIKKHIAAA 491 (693)
Q Consensus 427 ~~Dc~~Al~ldp~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~-~~~~~~l~~~i~~~ 491 (693)
+..|...|..+|.++|||||||+|+.+.=+..||.+||+.+++++|+-+.+ +.+++.+..++++.
T Consensus 250 leh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~ek 315 (329)
T KOG0545|consen 250 LEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAEK 315 (329)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999986543 45566666655443
No 203
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.45 E-value=3.5e-11 Score=129.42 Aligned_cols=229 Identities=26% Similarity=0.395 Sum_probs=164.0
Q ss_pred EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCc-EEEEeccCCCcceEEEEE-eeCCCCC-EEEEEeC-CCcEE
Q 005502 45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-LLHSIETGHSANVFCTKF-VPETSDE-LVVSGAG-DAEVR 120 (693)
Q Consensus 45 ~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~-~~~~l~~~h~~~I~sl~f-~p~~~~~-~l~sgs~-Dg~V~ 120 (693)
.+.+|...|.++.+.+.+..++.++.|+.+.+|+...+. .+..+...+...+..+.+ .++ +. +++..+. |+.+.
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPD--GNSILLASSSLDGTVK 137 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCC--cceEEeccCCCCccEE
Confidence 567899999999999999999999999999999998876 666663223347888888 555 44 5555444 99999
Q ss_pred EEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeC-CCcEEEEeCCCCCCCCCCCCCCcccceEEEe
Q 005502 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (693)
Q Consensus 121 vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~-Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~ 199 (693)
+|++... ......+..|...|..++|+|. +..+++++. |+.+++|++......
T Consensus 138 ~~~~~~~---------~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 191 (466)
T COG2319 138 LWDLSTP---------GKLIRTLEGHSESVTSLAFSPD-GKLLASGSSLDGTIKLWDLRTGKPL---------------- 191 (466)
T ss_pred EEEecCC---------CeEEEEEecCcccEEEEEECCC-CCEEEecCCCCCceEEEEcCCCceE----------------
Confidence 9999851 1446778889999999999994 457777775 999999999873311
Q ss_pred ccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCc
Q 005502 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (693)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 279 (693)
.....|...+.+++|+|++..++++++.|+.|++||.+....... .+ .+|..
T Consensus 192 ---------~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~------------~~-------~~~~~ 243 (466)
T COG2319 192 ---------STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS------------TL-------SGHSD 243 (466)
T ss_pred ---------EeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEee------------ec-------CCCCc
Confidence 111226678999999987433555559999999998774322110 01 22333
Q ss_pred cceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEe-ecCCCceeEEecc
Q 005502 280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRY-TVGDASKIMSFTP 331 (693)
Q Consensus 280 ~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~-~~~~~~~~~~~~p 331 (693)
.+ ...|+|++..+++++.|+.+++|++.......... .+......+.+.|
T Consensus 244 -~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 294 (466)
T COG2319 244 -SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP 294 (466)
T ss_pred -ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC
Confidence 12 22899999888999999999999999865412222 3334455556666
No 204
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=1.1e-12 Score=138.41 Aligned_cols=193 Identities=20% Similarity=0.314 Sum_probs=140.2
Q ss_pred cCcccccchh------hhccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC---------cEEEEecc
Q 005502 26 VNHSLQMHSS------LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR---------KLLHSIET 90 (693)
Q Consensus 26 ~~~~l~~~~~------~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~---------~~~~~l~~ 90 (693)
.++.+.+|.. --..++++.+|++|.++|.|+++.+++..+.+|+-||+|+.|++... ..+.....
T Consensus 314 ed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~ 393 (577)
T KOG0642|consen 314 EDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLL 393 (577)
T ss_pred cccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhcccee
Confidence 4455554432 44567889999999999999999999999999999999999965421 12333337
Q ss_pred CCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCC------------CCCCCCC-------------------
Q 005502 91 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL------------DDNAITP------------------- 139 (693)
Q Consensus 91 ~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~------------~~~~~~~------------------- 139 (693)
||.+.|+.+++++.. ..|++++.||+|+.|+........+ +....++
T Consensus 394 Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev 471 (577)
T KOG0642|consen 394 GHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEV 471 (577)
T ss_pred ccccceeeeeecccc--cceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhh
Confidence 999999999999984 6799999999999999875433111 0000000
Q ss_pred ---ceeecc-------CCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeec
Q 005502 140 ---SALYQC-------HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA 209 (693)
Q Consensus 140 ---~~~~~~-------h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~ 209 (693)
+..+.. -...+..+.++|.. .+.+++.+|+.|+++|..++.. +.
T Consensus 472 ~s~~~~~~s~~~~~~~~~~~in~vVs~~~~-~~~~~~hed~~Ir~~dn~~~~~-------------------------l~ 525 (577)
T KOG0642|consen 472 VSDLLIFESSASPGPRRYPQINKVVSHPTA-DITFTAHEDRSIRFFDNKTGKI-------------------------LH 525 (577)
T ss_pred hhheeeccccCCCcccccCccceEEecCCC-CeeEecccCCceeccccccccc-------------------------ch
Confidence 000000 11345667777844 6677999999999999888763 23
Q ss_pred CCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCC
Q 005502 210 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (693)
Q Consensus 210 ~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~ 247 (693)
....|...++++++.|. +-+|++|+.|+.|++|.+..
T Consensus 526 s~~a~~~svtslai~~n-g~~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 526 SMVAHKDSVTSLAIDPN-GPYLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred heeeccceecceeecCC-CceEEeecCCceeehhhccc
Confidence 33456788999999997 67999999999999998864
No 205
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=5.1e-12 Score=120.59 Aligned_cols=209 Identities=18% Similarity=0.245 Sum_probs=143.9
Q ss_pred eEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcE------EEEe-ccCC-----CcceEEEEEeeCCCCCEE
Q 005502 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL------LHSI-ETGH-----SANVFCTKFVPETSDELV 110 (693)
Q Consensus 43 ~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~------~~~l-~~~h-----~~~I~sl~f~p~~~~~~l 110 (693)
+-..++|.++|+.++|. ..+|++|++ |.|+=|....... +..+ ..-| .-.|.++-..|.. +-+
T Consensus 55 iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e--nSi 129 (325)
T KOG0649|consen 55 IVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE--NSI 129 (325)
T ss_pred eeeccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC--CcE
Confidence 34458999999999998 457778765 9999998764321 1111 1122 2468899999885 445
Q ss_pred EEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCC
Q 005502 111 VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSH 190 (693)
Q Consensus 111 ~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~ 190 (693)
++++.|+.++.||++.+ +....+.+|++.|.++.--..++. ++||++||++|+||+++.+....+....
T Consensus 130 ~~AgGD~~~y~~dlE~G----------~i~r~~rGHtDYvH~vv~R~~~~q-ilsG~EDGtvRvWd~kt~k~v~~ie~yk 198 (325)
T KOG0649|consen 130 LFAGGDGVIYQVDLEDG----------RIQREYRGHTDYVHSVVGRNANGQ-ILSGAEDGTVRVWDTKTQKHVSMIEPYK 198 (325)
T ss_pred EEecCCeEEEEEEecCC----------EEEEEEcCCcceeeeeeecccCcc-eeecCCCccEEEEeccccceeEEecccc
Confidence 55568999999999975 557899999999999988543554 5599999999999999987542221110
Q ss_pred cccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccC
Q 005502 191 QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM 270 (693)
Q Consensus 191 ~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~ 270 (693)
. .. ...|.....|-+++.+.+ +|++|+ ...+.+|.+|..++...+..
T Consensus 199 ------------~--~~-~lRp~~g~wigala~~ed---WlvCGg-Gp~lslwhLrsse~t~vfpi-------------- 245 (325)
T KOG0649|consen 199 ------------N--PN-LLRPDWGKWIGALAVNED---WLVCGG-GPKLSLWHLRSSESTCVFPI-------------- 245 (325)
T ss_pred ------------C--hh-hcCcccCceeEEEeccCc---eEEecC-CCceeEEeccCCCceEEEec--------------
Confidence 0 00 111223456788888764 676664 57899999998754333211
Q ss_pred ccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCC
Q 005502 271 HLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 271 ~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~ 310 (693)
..+|..+.|..+ .+++++...+|.-|.+..
T Consensus 246 --------pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 246 --------PARVHLVDFVDD--CVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred --------ccceeEeeeecc--eEEEeccccceeeeeecc
Confidence 114677888554 577888888999998876
No 206
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=9.3e-14 Score=132.72 Aligned_cols=101 Identities=21% Similarity=0.173 Sum_probs=94.8
Q ss_pred cchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCC
Q 005502 360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSS 439 (693)
Q Consensus 360 ~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~ 439 (693)
-..+++++++||.+|...+ |..||.+|++||...|.. +.+|.|||.||||++. +..+..||.+||+++|+
T Consensus 7 s~~a~qlkE~gnk~f~~k~-y~~ai~~y~raI~~nP~~------~~Y~tnralchlk~~~---~~~v~~dcrralql~~N 76 (284)
T KOG4642|consen 7 SESAEQLKEQGNKCFIPKR-YDDAIDCYSRAICINPTV------ASYYTNRALCHLKLKH---WEPVEEDCRRALQLDPN 76 (284)
T ss_pred chHHHHHHhccccccchhh-hchHHHHHHHHHhcCCCc------chhhhhHHHHHHHhhh---hhhhhhhHHHHHhcChH
Confidence 3568899999999999999 999999999999999887 8899999999999765 99999999999999999
Q ss_pred CcchhhhHHHHHHHhccHHHHHHHHHHHccc
Q 005502 440 SFRAHLYMSEALEQLCKYKEALDFAIAAQCL 470 (693)
Q Consensus 440 ~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~ 470 (693)
.+||||-++++++..+.|.+|+..|++++.+
T Consensus 77 ~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 77 LVKAHYFLGQWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 9999999999999999999999999999543
No 207
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.43 E-value=2.5e-12 Score=137.28 Aligned_cols=236 Identities=17% Similarity=0.241 Sum_probs=158.6
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCC
Q 005502 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG 131 (693)
Q Consensus 52 ~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~ 131 (693)
+|+.++|-|||+.|+.+..| .+.|||+..|..+.++ .+|.+.|.||+|+.+ |..|++|+.|..|.+|....
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtL-KgHKDtVycVAys~d--GkrFASG~aDK~VI~W~~kl----- 84 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPL-KGHKDTVYCVAYAKD--GKRFASGSADKSVIIWTSKL----- 84 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCccccccc-ccccceEEEEEEccC--CceeccCCCceeEEEecccc-----
Confidence 99999999999988887655 7999999999999999 799999999999998 79999999999999998874
Q ss_pred CCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCC
Q 005502 132 LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP 211 (693)
Q Consensus 132 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 211 (693)
+-+..+ .|.+.|.|+.|+| -.+.++|++-. ..-+|........ .
T Consensus 85 ------EG~LkY-SH~D~IQCMsFNP-~~h~LasCsLs-dFglWS~~qK~V~---------------------------K 128 (1081)
T KOG1538|consen 85 ------EGILKY-SHNDAIQCMSFNP-ITHQLASCSLS-DFGLWSPEQKSVS---------------------------K 128 (1081)
T ss_pred ------cceeee-ccCCeeeEeecCc-hHHHhhhcchh-hccccChhhhhHH---------------------------h
Confidence 223344 4999999999999 66788888753 3457876543211 0
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCccc--ccccCc------------------
Q 005502 212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN--YFCPMH------------------ 271 (693)
Q Consensus 212 ~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~--~~~~~~------------------ 271 (693)
......+.+++|..+ |.+|+.|-.+|+|.|-+.. +++-..++.+..+...+. .++|..
T Consensus 129 ~kss~R~~~CsWtnD-GqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLS 206 (1081)
T KOG1538|consen 129 HKSSSRIICCSWTND-GQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLS 206 (1081)
T ss_pred hhhheeEEEeeecCC-CcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeE
Confidence 012346789999997 7999999999999987543 222222222111111110 011110
Q ss_pred ---ccc-----CCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCc
Q 005502 272 ---LSE-----HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNG 335 (693)
Q Consensus 272 ---~~~-----~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~g 335 (693)
+.+ ...-+....++.+-++|.+++.|+.|+.+.+|--.. -..-..-..++-+..++..|.+..
T Consensus 207 Fy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G-vrLGTvg~~D~WIWtV~~~PNsQ~ 277 (1081)
T KOG1538|consen 207 FYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDG-VRLGTVGEQDSWIWTVQAKPNSQY 277 (1081)
T ss_pred EEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeecC-eEEeeccccceeEEEEEEccCCce
Confidence 000 001112345677788999999999999999986544 111111122333444555555443
No 208
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.41 E-value=4.4e-11 Score=132.34 Aligned_cols=239 Identities=18% Similarity=0.179 Sum_probs=152.6
Q ss_pred CcEEEEECCCC-cEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCe
Q 005502 72 THINVWSYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRV 150 (693)
Q Consensus 72 g~I~IWd~~~~-~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V 150 (693)
+.+.||++... .+...+ .-...|++++|+|.. .++++.|..+|.|.+||++....... .........|..+|
T Consensus 222 ~~~~vW~~~~p~~Pe~~~--~~~s~v~~~~f~p~~-p~ll~gG~y~GqV~lWD~~~~~~~~~----s~ls~~~~sh~~~v 294 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVL--ESPSEVTCLKFCPFD-PNLLAGGCYNGQVVLWDLRKGSDTPP----SGLSALEVSHSEPV 294 (555)
T ss_pred ceEEEEecCCCCCceEEE--ecCCceeEEEeccCC-cceEEeeccCceEEEEEccCCCCCCC----cccccccccCCcCe
Confidence 46899999866 333333 456789999999996 78999999999999999997543211 12223345689999
Q ss_pred EEEEEecCCC-cEEEEEeCCCcEEEEeCCCCCCCCCCCC----C------------------CcccceEEEeccCCcee-
Q 005502 151 KKLAVEVGNP-HVVWSASEDGTLRQHDFRQGSSCPPAGS----S------------------HQECRNILLDLRCGAKR- 206 (693)
Q Consensus 151 ~~l~~sp~~~-~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~----~------------------~~~~~~~l~~~~~~~~~- 206 (693)
..+.|.+... .-|++++.||.|..|+++.-..+..... . .......++....|...
T Consensus 295 ~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~ 374 (555)
T KOG1587|consen 295 TAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYK 374 (555)
T ss_pred EEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEE
Confidence 9999976222 3477999999999999886543210000 0 00111222222222211
Q ss_pred ---------------eecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecC-CCCCCcccccCCCCCCcccccccC
Q 005502 207 ---------------SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR-MLPPLTSCQKRMSPPPCVNYFCPM 270 (693)
Q Consensus 207 ---------------~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r-~~~~~~~~~~~~~~~~~~~~~~~~ 270 (693)
.+..+..|...|+++.++|-....+++++ |.+|+||... ...|+..+
T Consensus 375 ~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~---------------- 437 (555)
T KOG1587|consen 375 GCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSL---------------- 437 (555)
T ss_pred EeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhh----------------
Confidence 12345567789999999999777777776 9999999877 44333222
Q ss_pred ccccCCCCccceEEEEEcCCCCEE-EEEecCCcEEEEECCCCCcceEEeec--CCCceeEEeccCCCccccc
Q 005502 271 HLSEHGRSSLHLTHVTFSPNGEEV-LLSYSGEHVYLMDVNHAGGRAMRYTV--GDASKIMSFTPTLNGLELQ 339 (693)
Q Consensus 271 ~~~~~~h~~~~V~~v~fspdg~~L-~sgs~Dg~V~lwDl~~~~~~~~~~~~--~~~~~~~~~~p~~~g~~~~ 339 (693)
..+.. .|++++|||...-+ +++..||.|.+||+......++.... ........|++...-++..
T Consensus 438 ----~~~~~-~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavG 504 (555)
T KOG1587|consen 438 ----DSSPD-YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVG 504 (555)
T ss_pred ----hhccc-eeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEe
Confidence 11222 49999999988655 55666999999999886544443321 2233334455444334333
No 209
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.41 E-value=7e-12 Score=124.18 Aligned_cols=205 Identities=16% Similarity=0.184 Sum_probs=150.4
Q ss_pred CCcCcccccchhhhcc-ccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEC-CCC--cEEEEeccCCCcceEEE
Q 005502 24 PDVNHSLQMHSSLVRR-LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSY-SSR--KLLHSIETGHSANVFCT 99 (693)
Q Consensus 24 ~~~~~~l~~~~~~i~~-l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~-~~~--~~~~~l~~~h~~~I~sl 99 (693)
.+..+.+++++..-.. .++.++|..|...|++|+|+|..+.|++|+.|..-.||.. ..+ ++...+ ..+...+++|
T Consensus 28 ~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvL-lRiNrAAt~V 106 (361)
T KOG1523|consen 28 SPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVL-LRINRAATCV 106 (361)
T ss_pred ccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeE-EEeccceeeE
Confidence 3455678888887777 8999999999999999999999999999999999999998 333 344455 4788899999
Q ss_pred EEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 005502 100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (693)
Q Consensus 100 ~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~ 179 (693)
.|+|. ++.|++|+.-..|.||-++...- -+-..++-+.+.+.|+++.|+| ++-++++|+.|+.+|++..--
T Consensus 107 ~WsP~--enkFAVgSgar~isVcy~E~ENd------WWVsKhikkPirStv~sldWhp-nnVLlaaGs~D~k~rVfSayI 177 (361)
T KOG1523|consen 107 KWSPK--ENKFAVGSGARLISVCYYEQEND------WWVSKHIKKPIRSTVTSLDWHP-NNVLLAAGSTDGKCRVFSAYI 177 (361)
T ss_pred eecCc--CceEEeccCccEEEEEEEecccc------eehhhhhCCccccceeeeeccC-CcceecccccCcceeEEEEee
Confidence 99999 68999999999999998875210 0011223345678899999999 778999999999999996421
Q ss_pred C--CCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCC
Q 005502 180 G--SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML 248 (693)
Q Consensus 180 ~--~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~ 248 (693)
. ...+. ..-|+.+..-...+.........+..+.|+|+ +..|+-.+.|..|.+-|....
T Consensus 178 K~Vdekpa---------p~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s-G~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 178 KGVDEKPA---------PTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS-GNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred eccccCCC---------CCCCccCCcHHHHHHhhccCCCceeeeEeCCC-CCEeeEecCCCceEEeecCCC
Confidence 1 00000 00111111001111222234568999999997 789999999999999887654
No 210
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.40 E-value=1.5e-12 Score=139.58 Aligned_cols=118 Identities=19% Similarity=0.202 Sum_probs=109.8
Q ss_pred hhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcc
Q 005502 363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR 442 (693)
Q Consensus 363 a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~K 442 (693)
+.++..+|+.+|..++ |..|+.+|.+||+..|.. +.+|.|||.+|+++ |++.+|+.++.+||+++|++.+
T Consensus 2 ~~~l~~~a~~a~~~~~-~~~Ai~~~~~Al~~~P~~------~~a~~~~a~~~~~~---g~~~eAl~~~~~Al~l~P~~~~ 71 (356)
T PLN03088 2 AKDLEDKAKEAFVDDD-FALAVDLYTQAIDLDPNN------AELYADRAQANIKL---GNFTEAVADANKAIELDPSLAK 71 (356)
T ss_pred cHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCcCCHH
Confidence 3468889999999999 999999999999999887 78999999999996 5599999999999999999999
Q ss_pred hhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHHHHHHHHH
Q 005502 443 AHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAA 490 (693)
Q Consensus 443 A~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l~~~i~~ 490 (693)
||+++|.+++.+|+|++|+.+|+++++++|++..+...+..+...+++
T Consensus 72 a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 72 AYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999988888888887754
No 211
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=2e-10 Score=121.67 Aligned_cols=250 Identities=16% Similarity=0.192 Sum_probs=161.8
Q ss_pred hhhccccceEEeccCCCcEEEEEECCCCCE-EEEEeCCCcEEEEECCCCcEE--EEec----------------------
Q 005502 35 SLVRRLSQERELEGHQGCVNAISWNSKGSL-LISGSDDTHINVWSYSSRKLL--HSIE---------------------- 89 (693)
Q Consensus 35 ~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~-LaSgs~Dg~I~IWd~~~~~~~--~~l~---------------------- 89 (693)
...++.++++.|. |...-+.|..+|||++ ||||..-..|++||+...... +.+.
T Consensus 37 ~~~~rieLiQdfe-~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~D 115 (703)
T KOG2321|consen 37 DYRQRIELIQDFE-MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQND 115 (703)
T ss_pred HHHHHHHHHHhcC-CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecC
Confidence 3455566666665 7888999999999985 567888899999998753211 0000
Q ss_pred ---cCC-----------CcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEE
Q 005502 90 ---TGH-----------SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV 155 (693)
Q Consensus 90 ---~~h-----------~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 155 (693)
.-| ...-.+++++.-+ -.+++ ++....|+=+++..+ ..+..+......++++.+
T Consensus 116 R~IefHak~G~hy~~RIP~~GRDm~y~~~s-cDly~-~gsg~evYRlNLEqG----------rfL~P~~~~~~~lN~v~i 183 (703)
T KOG2321|consen 116 RTIEFHAKYGRHYRTRIPKFGRDMKYHKPS-CDLYL-VGSGSEVYRLNLEQG----------RFLNPFETDSGELNVVSI 183 (703)
T ss_pred ceeeehhhcCeeeeeecCcCCccccccCCC-ccEEE-eecCcceEEEEcccc----------ccccccccccccceeeee
Confidence 000 1112344444332 13333 334456666777754 345566666689999999
Q ss_pred ecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCC--CCccceEEEEEcCCCCcEEEE
Q 005502 156 EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPP--KQTLSLKSCDISSTRPHLLLV 233 (693)
Q Consensus 156 sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~--~~~~~v~sl~~sp~~~~~Lat 233 (693)
++ ...+|++|+.+|.|-+||.|....+..+.. ... +...+ .....|+++.|+.+ |-.+++
T Consensus 184 n~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~------------~~~----v~s~pg~~~~~svTal~F~d~-gL~~aV 245 (703)
T KOG2321|consen 184 NE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDA------------ASS----VNSHPGGDAAPSVTALKFRDD-GLHVAV 245 (703)
T ss_pred cC-ccceEEecccCceEEEecchhhhhheeeec------------ccc----cCCCccccccCcceEEEecCC-ceeEEe
Confidence 99 557999999999999999998775522111 110 11111 22346999999987 789999
Q ss_pred EeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCC-EEEEEecCCcEEEEECCCCC
Q 005502 234 GGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 234 gs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~-~L~sgs~Dg~V~lwDl~~~~ 312 (693)
|..+|.|.|||+|..+|+..-.+ + ...+|..+.|.+.+. --+++.....++|||-.+++
T Consensus 246 Gts~G~v~iyDLRa~~pl~~kdh-------------------~-~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk 305 (703)
T KOG2321|consen 246 GTSTGSVLIYDLRASKPLLVKDH-------------------G-YELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGK 305 (703)
T ss_pred eccCCcEEEEEcccCCceeeccc-------------------C-CccceeeecccccCCCceEEecchHHhhhcccccCC
Confidence 99999999999998776532211 1 123689999987633 33445556799999999976
Q ss_pred cceEEeecCCCceeEEeccCCCcc
Q 005502 313 GRAMRYTVGDASKIMSFTPTLNGL 336 (693)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~p~~~g~ 336 (693)
..... ......+.+|+.|...-+
T Consensus 306 ~~asi-Ept~~lND~C~~p~sGm~ 328 (703)
T KOG2321|consen 306 PMASI-EPTSDLNDFCFVPGSGMF 328 (703)
T ss_pred ceeec-cccCCcCceeeecCCceE
Confidence 43333 333447778887765443
No 212
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=4.6e-12 Score=134.27 Aligned_cols=214 Identities=14% Similarity=0.173 Sum_probs=154.8
Q ss_pred EeccCCCcEEEEEECCCCCEEEEEeCC---CcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 005502 45 ELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 121 (693)
Q Consensus 45 ~l~gH~~~V~~l~~s~~g~~LaSgs~D---g~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~v 121 (693)
..-.|...|+.+.|+..|.+|+|...+ ..|.|.++...+...-| ..-.+.|.++.|+|.. .+|+.++ -..|+|
T Consensus 516 ~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF-~kskG~vq~v~FHPs~--p~lfVaT-q~~vRi 591 (733)
T KOG0650|consen 516 IVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPF-RKSKGLVQRVKFHPSK--PYLFVAT-QRSVRI 591 (733)
T ss_pred EEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCch-hhcCCceeEEEecCCC--ceEEEEe-ccceEE
Confidence 334589999999999999999998653 56899999877666555 3456789999999995 5555554 478999
Q ss_pred EEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEecc
Q 005502 122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR 201 (693)
Q Consensus 122 wdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~ 201 (693)
||+... ..++.+......|..++++|. +.-|+.|+.|+.+..||+.-...+
T Consensus 592 YdL~kq----------elvKkL~tg~kwiS~msihp~-GDnli~gs~d~k~~WfDldlsskP------------------ 642 (733)
T KOG0650|consen 592 YDLSKQ----------ELVKKLLTGSKWISSMSIHPN-GDNLILGSYDKKMCWFDLDLSSKP------------------ 642 (733)
T ss_pred EehhHH----------HHHHHHhcCCeeeeeeeecCC-CCeEEEecCCCeeEEEEcccCcch------------------
Confidence 999853 456666666788999999994 455558999999999999765422
Q ss_pred CCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccc
Q 005502 202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH 281 (693)
Q Consensus 202 ~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 281 (693)
.....-|...+++++|++. -.+|++|+.||.|.||.-+-...+-.- +. ...++ ..++|... ....
T Consensus 643 ------yk~lr~H~~avr~Va~H~r-yPLfas~sdDgtv~Vfhg~VY~Dl~qn--pl--iVPlK-~L~gH~~~---~~~g 707 (733)
T KOG0650|consen 643 ------YKTLRLHEKAVRSVAFHKR-YPLFASGSDDGTVIVFHGMVYNDLLQN--PL--IVPLK-RLRGHEKT---NDLG 707 (733)
T ss_pred ------hHHhhhhhhhhhhhhhccc-cceeeeecCCCcEEEEeeeeehhhhcC--Cc--eEeee-eccCceee---cccc
Confidence 2233356778999999996 569999999999999865432211000 00 00011 11122111 2335
Q ss_pred eEEEEEcCCCCEEEEEecCCcEEEE
Q 005502 282 LTHVTFSPNGEEVLLSYSGEHVYLM 306 (693)
Q Consensus 282 V~~v~fspdg~~L~sgs~Dg~V~lw 306 (693)
|..+.|+|...+|++++.||+|++|
T Consensus 708 VLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 708 VLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eEeecccCCCceEEecCCCceEEee
Confidence 8899999999999999999999998
No 213
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.38 E-value=6.7e-13 Score=144.99 Aligned_cols=247 Identities=19% Similarity=0.319 Sum_probs=180.4
Q ss_pred CcccccchhhhccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCC
Q 005502 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS 106 (693)
Q Consensus 27 ~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~ 106 (693)
+..+++|+ .....+...++||.+.|+.++.+.++.++|++|.|..|++|.+.++.++..+ .+|++.|++++|+|-.
T Consensus 211 d~lvKiwS--~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvL-rghtgavtaiafsP~~- 286 (1113)
T KOG0644|consen 211 DRLVKIWS--METARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVL-RGHTGAVTAIAFSPRA- 286 (1113)
T ss_pred cceeeeee--ccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHH-hccccceeeeccCccc-
Confidence 35677877 7778889999999999999999999999999999999999999999999888 7999999999999972
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCC--C-
Q 005502 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS--C- 183 (693)
Q Consensus 107 ~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~--~- 183 (693)
+.+.||++++||.+-..... ...|.. +. ...-+-++.|.. ...-++|++.|+.-..|.+..... .
T Consensus 287 -----sss~dgt~~~wd~r~~~~~y----~prp~~-~~-~~~~~~s~~~~~-~~~~f~Tgs~d~ea~n~e~~~l~~~~~~ 354 (1113)
T KOG0644|consen 287 -----SSSDDGTCRIWDARLEPRIY----VPRPLK-FT-EKDLVDSILFEN-NGDRFLTGSRDGEARNHEFEQLAWRSNL 354 (1113)
T ss_pred -----cCCCCCceEecccccccccc----CCCCCC-cc-cccceeeeeccc-cccccccccCCcccccchhhHhhhhccc
Confidence 67889999999998211000 001111 11 224566666665 556788999998887776543210 0
Q ss_pred -----------CCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCc
Q 005502 184 -----------PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLT 252 (693)
Q Consensus 184 -----------~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~ 252 (693)
.........+....|.+.+|. .+....+|...+..+.++|.++....+++.||...|||+-.+.+++
T Consensus 355 lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~--l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik 432 (1113)
T KOG0644|consen 355 LIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQ--LLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIK 432 (1113)
T ss_pred eEEEeccccccccceeeeeeeEeeeeecccch--hhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcce
Confidence 000111122333445555443 2334456777889999999999999999999999999998876553
Q ss_pred ccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCC
Q 005502 253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~ 312 (693)
.. + .+|. .+...+||++|..++....-|+++|+....+.
T Consensus 433 ~y------------~-------~gh~--kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 433 HY------------F-------IGHG--KLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred ee------------e-------cccc--eeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 22 1 2233 47788999999999999889999999876643
No 214
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.37 E-value=2.7e-10 Score=121.61 Aligned_cols=267 Identities=8% Similarity=0.083 Sum_probs=157.9
Q ss_pred cccccchhh-hccccceEEeccCCCcEEEEEECCCCCEEEEEe-CCCcEEEEECCC-CcE--EEEeccCCCcceEEEEEe
Q 005502 28 HSLQMHSSL-VRRLSQERELEGHQGCVNAISWNSKGSLLISGS-DDTHINVWSYSS-RKL--LHSIETGHSANVFCTKFV 102 (693)
Q Consensus 28 ~~l~~~~~~-i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs-~Dg~I~IWd~~~-~~~--~~~l~~~h~~~I~sl~f~ 102 (693)
+.+.+++.. -..++++.++. +.+....|.++|++++|++++ .++.|.+|++.. ++. +..+ ...+....+.|+
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~--~~~~~p~~i~~~ 88 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES--PLPGSPTHISTD 88 (330)
T ss_pred CCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee--cCCCCceEEEEC
Confidence 445555432 13445666665 346678899999999887664 578899999863 332 2223 233456789999
Q ss_pred eCCCCCEEEEEe-CCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCC
Q 005502 103 PETSDELVVSGA-GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS 181 (693)
Q Consensus 103 p~~~~~~l~sgs-~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~ 181 (693)
|+ +++|++++ .++.|.+|++... +... ..+..+. +...+..++++|++..++++...++.|.+||+.+..
T Consensus 89 ~~--g~~l~v~~~~~~~v~v~~~~~~-g~~~-----~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g 159 (330)
T PRK11028 89 HQ--GRFLFSASYNANCVSVSPLDKD-GIPV-----APIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG 159 (330)
T ss_pred CC--CCEEEEEEcCCCeEEEEEECCC-CCCC-----Cceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC
Confidence 98 57666665 4899999999742 1110 1222222 234567789999665566677778999999997632
Q ss_pred CCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeC-CCcEEEEecCCCC-CCcccccCCC
Q 005502 182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-DAFARLYDRRMLP-PLTSCQKRMS 259 (693)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~-Dg~I~lwD~r~~~-~~~~~~~~~~ 259 (693)
.+.... ...... .. ......++|+|+ +++++++.. ++.|.+||+.... .+...+
T Consensus 160 ~l~~~~-------~~~~~~----------~~--g~~p~~~~~~pd-g~~lyv~~~~~~~v~v~~~~~~~~~~~~~~---- 215 (330)
T PRK11028 160 HLVAQE-------PAEVTT----------VE--GAGPRHMVFHPN-QQYAYCVNELNSSVDVWQLKDPHGEIECVQ---- 215 (330)
T ss_pred cccccC-------CCceec----------CC--CCCCceEEECCC-CCEEEEEecCCCEEEEEEEeCCCCCEEEEE----
Confidence 110000 000000 00 123457899997 566666654 9999999997421 111100
Q ss_pred CCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEec-CCcEEEEECCCCCcceEEe---ecCCCceeEEeccCCCc
Q 005502 260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGRAMRY---TVGDASKIMSFTPTLNG 335 (693)
Q Consensus 260 ~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~-Dg~V~lwDl~~~~~~~~~~---~~~~~~~~~~~~p~~~g 335 (693)
.+..+ |.... .. .+...+.|+|+|++|+++.. ++.|.+|++.......... ..+..+..+.++|+.+-
T Consensus 216 ---~~~~~-p~~~~---~~-~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~ 287 (330)
T PRK11028 216 ---TLDMM-PADFS---DT-RWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKY 287 (330)
T ss_pred ---EEecC-CCcCC---CC-ccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCE
Confidence 00000 11100 01 13457999999999999865 7899999997643222211 22334567778877655
Q ss_pred ccc
Q 005502 336 LEL 338 (693)
Q Consensus 336 ~~~ 338 (693)
+..
T Consensus 288 l~v 290 (330)
T PRK11028 288 LIA 290 (330)
T ss_pred EEE
Confidence 543
No 215
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.36 E-value=1.2e-10 Score=117.62 Aligned_cols=195 Identities=11% Similarity=0.138 Sum_probs=139.3
Q ss_pred cEEEEEECCCCCEEEEEeCC--CcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCC
Q 005502 52 CVNAISWNSKGSLLISGSDD--THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (693)
Q Consensus 52 ~V~~l~~s~~g~~LaSgs~D--g~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~ 129 (693)
.|--+-|+ ..++|..+.+ +.+++.++..+..++.+ -...+|.+|+++.+ .|+++-. ..|+|||++..
T Consensus 48 ~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~--~fpt~IL~VrmNr~----RLvV~Le-e~IyIydI~~M-- 116 (391)
T KOG2110|consen 48 SIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTICEI--FFPTSILAVRMNRK----RLVVCLE-ESIYIYDIKDM-- 116 (391)
T ss_pred EEEEeecc--cceeEEEecCCCceEEEEEcccCceEEEE--ecCCceEEEEEccc----eEEEEEc-ccEEEEecccc--
Confidence 34444454 4566666544 34899999888888877 35678999999865 4555544 44999999964
Q ss_pred CCCCCCCCCCceeec---cCCCCeEEEEEecCCCcEEEE-Ee-CCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCc
Q 005502 130 RGLDDNAITPSALYQ---CHTRRVKKLAVEVGNPHVVWS-AS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (693)
Q Consensus 130 ~~~~~~~~~~~~~~~---~h~~~V~~l~~sp~~~~~l~S-gs-~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (693)
+.+.++. .+...+.++++++ .+.+++- ++ ..|.|.+||+.+-++.
T Consensus 117 --------klLhTI~t~~~n~~gl~AlS~n~-~n~ylAyp~s~t~GdV~l~d~~nl~~v--------------------- 166 (391)
T KOG2110|consen 117 --------KLLHTIETTPPNPKGLCALSPNN-ANCYLAYPGSTTSGDVVLFDTINLQPV--------------------- 166 (391)
T ss_pred --------eeehhhhccCCCccceEeeccCC-CCceEEecCCCCCceEEEEEcccceee---------------------
Confidence 3344333 3455566666655 3345543 22 3589999998775422
Q ss_pred eeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcE-EEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceE
Q 005502 205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA-RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 283 (693)
Q Consensus 205 ~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I-~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~ 283 (693)
.....|...+.+++|+|+ |.+|||++..|+| |+|.+.+++.+..++.... ...|.
T Consensus 167 ----~~I~aH~~~lAalafs~~-G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-------------------~~~Iy 222 (391)
T KOG2110|consen 167 ----NTINAHKGPLAALAFSPD-GTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-------------------PVSIY 222 (391)
T ss_pred ----eEEEecCCceeEEEECCC-CCEEEEeccCceEEEEEEcCCccEeeeeeCCce-------------------eeEEE
Confidence 223367889999999997 7999999998875 8999998876665543221 22599
Q ss_pred EEEEcCCCCEEEEEecCCcEEEEECCCC
Q 005502 284 HVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (693)
Q Consensus 284 ~v~fspdg~~L~sgs~Dg~V~lwDl~~~ 311 (693)
+++|+|++++|.+.+..++|++|.+...
T Consensus 223 SL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 223 SLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred EEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 9999999999999999999999999883
No 216
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=1.3e-10 Score=129.09 Aligned_cols=237 Identities=19% Similarity=0.254 Sum_probs=177.5
Q ss_pred cccccchhhhccccceEEeccCCCcEEEEEECCCC---CEEEEEeCCCcEEEEECCCCcEEEEec---------------
Q 005502 28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKG---SLLISGSDDTHINVWSYSSRKLLHSIE--------------- 89 (693)
Q Consensus 28 ~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g---~~LaSgs~Dg~I~IWd~~~~~~~~~l~--------------- 89 (693)
..+++++ ..+..+++.|.+|..++..+.+.|.. .++.+++.||.|++||...+..++++.
T Consensus 37 ~~V~VyS--~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a 114 (792)
T KOG1963|consen 37 NFVKVYS--TATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQA 114 (792)
T ss_pred CEEEEEe--cchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHh
Confidence 5566654 45677888999999999999999854 478899999999999987654433321
Q ss_pred --------------------------------------------------------------------------------
Q 005502 90 -------------------------------------------------------------------------------- 89 (693)
Q Consensus 90 -------------------------------------------------------------------------------- 89 (693)
T Consensus 115 ~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~ 194 (792)
T KOG1963|consen 115 DISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKH 194 (792)
T ss_pred CccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEeccccee
Confidence
Q ss_pred -------cCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcE
Q 005502 90 -------TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162 (693)
Q Consensus 90 -------~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~ 162 (693)
..|.-++++++++|+ ++++++|..||.|.+|.--..+. .......+.-|...|.+++|++ ++.+
T Consensus 195 ~~~~~~~~~Htf~~t~~~~spn--~~~~Aa~d~dGrI~vw~d~~~~~------~~~t~t~lHWH~~~V~~L~fS~-~G~~ 265 (792)
T KOG1963|consen 195 TSSRDITVHHTFNITCVALSPN--ERYLAAGDSDGRILVWRDFGSSD------DSETCTLLHWHHDEVNSLSFSS-DGAY 265 (792)
T ss_pred eccchhhhhhcccceeEEeccc--cceEEEeccCCcEEEEecccccc------ccccceEEEecccccceeEEec-CCce
Confidence 246677899999999 69999999999999996543111 1144667788999999999999 6677
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEE
Q 005502 163 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARL 242 (693)
Q Consensus 163 l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~l 242 (693)
|.|||..|.+.+|.+.++++. ..|.-..+|..+.++|+ +.+.++...|..|.+
T Consensus 266 LlSGG~E~VLv~Wq~~T~~kq--------------------------fLPRLgs~I~~i~vS~d-s~~~sl~~~DNqI~l 318 (792)
T KOG1963|consen 266 LLSGGREGVLVLWQLETGKKQ--------------------------FLPRLGSPILHIVVSPD-SDLYSLVLEDNQIHL 318 (792)
T ss_pred EeecccceEEEEEeecCCCcc--------------------------cccccCCeeEEEEEcCC-CCeEEEEecCceEEE
Confidence 789999999999999887621 12233467899999997 788888999999999
Q ss_pred EecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCC
Q 005502 243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 243 wD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~ 312 (693)
....++....++.....+.+.. ..+..+ -.+.++++|--+.++..+..|+|.+||+.+..
T Consensus 319 i~~~dl~~k~tIsgi~~~~~~~---------k~~~~~-l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~ 378 (792)
T KOG1963|consen 319 IKASDLEIKSTISGIKPPTPST---------KTRPQS-LTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDS 378 (792)
T ss_pred EeccchhhhhhccCccCCCccc---------cccccc-cceeEEEcCCCCceeecCCCceEEEEeccccc
Confidence 9887766554443322221110 011122 36789999977788889999999999998854
No 217
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.33 E-value=1.4e-10 Score=116.65 Aligned_cols=203 Identities=17% Similarity=0.239 Sum_probs=140.3
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCC-
Q 005502 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS- 128 (693)
Q Consensus 50 ~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~- 128 (693)
+-++.-++|++.-..+|++..|-.|+||+-.. ++...++..-..+|+|++|-|.+ ...|+.|+.. -|.+|......
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPls-aselavgCr~-gIciW~~s~tln 174 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLS-ASELAVGCRA-GICIWSDSRTLN 174 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCC-cceeeeeecc-eeEEEEcCcccc
Confidence 45788999999878899999999999999765 66677766667899999999997 6788888764 58999876421
Q ss_pred -CCCCCCCCCCC--ceeeccCCCCeEEEEEecCCCcEEEEEeC-CCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCc
Q 005502 129 -GRGLDDNAITP--SALYQCHTRRVKKLAVEVGNPHVVWSASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (693)
Q Consensus 129 -~~~~~~~~~~~--~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~-Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (693)
.+........+ +....+| .+|++++|.+ ++..+++++. |..|++||..++...+..
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~pL~------------------ 234 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKIPLI------------------ 234 (445)
T ss_pred cccccccccccchhheeCCCC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCCccccc------------------
Confidence 11111111122 2223345 6899999999 4566667664 678999999887643211
Q ss_pred eeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEE
Q 005502 205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH 284 (693)
Q Consensus 205 ~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~ 284 (693)
+.....++-+.|||+ +.+|.++.-|+..++|.....- .+.... +. .+ .|..
T Consensus 235 -------~~glgg~slLkwSPd-gd~lfaAt~davfrlw~e~q~w------------t~erw~----lg----sg-rvqt 285 (445)
T KOG2139|consen 235 -------PKGLGGFSLLKWSPD-GDVLFAATCDAVFRLWQENQSW------------TKERWI----LG----SG-RVQT 285 (445)
T ss_pred -------ccCCCceeeEEEcCC-CCEEEEecccceeeeehhcccc------------eeccee----cc----CC-ceee
Confidence 123456778999998 6888899999999999654221 011111 10 11 5899
Q ss_pred EEEcCCCCEEEEEec-CCcEE
Q 005502 285 VTFSPNGEEVLLSYS-GEHVY 304 (693)
Q Consensus 285 v~fspdg~~L~sgs~-Dg~V~ 304 (693)
.+|+|+|++|+-++. .-.||
T Consensus 286 acWspcGsfLLf~~sgsp~ly 306 (445)
T KOG2139|consen 286 ACWSPCGSFLLFACSGSPRLY 306 (445)
T ss_pred eeecCCCCEEEEEEcCCceEE
Confidence 999999998775544 44444
No 218
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=4.2e-11 Score=122.95 Aligned_cols=187 Identities=15% Similarity=0.141 Sum_probs=129.6
Q ss_pred EEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 005502 97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD 176 (693)
Q Consensus 97 ~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwD 176 (693)
.+++|+++ |..|++|+.||++|||++... .++.....|...|.+|.|+| ++++|++.+.| ..++|+
T Consensus 148 k~vaf~~~--gs~latgg~dg~lRv~~~Ps~----------~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~ 213 (398)
T KOG0771|consen 148 KVVAFNGD--GSKLATGGTDGTLRVWEWPSM----------LTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWS 213 (398)
T ss_pred eEEEEcCC--CCEeeeccccceEEEEecCcc----------hhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEE
Confidence 67899988 799999999999999997653 45667778999999999999 77899999999 999999
Q ss_pred CCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCC---C-cEEEEEeCCCcEEEEecCCCCCCc
Q 005502 177 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR---P-HLLLVGGSDAFARLYDRRMLPPLT 252 (693)
Q Consensus 177 lr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~---~-~~Latgs~Dg~I~lwD~r~~~~~~ 252 (693)
++++....... +.........|.|+.++ . .+++.-..-+.|+.||+...+.-
T Consensus 214 ~~~g~~~a~~t-----------------------~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~- 269 (398)
T KOG0771|consen 214 VNTGAALARKT-----------------------PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS- 269 (398)
T ss_pred eccCchhhhcC-----------------------CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-
Confidence 99985331111 01122334556666652 1 22233344577788777643211
Q ss_pred ccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEE-eecCCCceeEEecc
Q 005502 253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMR-YTVGDASKIMSFTP 331 (693)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~-~~~~~~~~~~~~~p 331 (693)
..++...+. .++. .|++++.+++|++++.|+.||.|-|++..+.+..... ..|...++.+.|+|
T Consensus 270 ---------~~l~~~~~~----~~~~--siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~P 334 (398)
T KOG0771|consen 270 ---------NFLRLRKKI----KRFK--SISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSP 334 (398)
T ss_pred ---------cccchhhhh----hccC--cceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcC
Confidence 001111111 1222 5999999999999999999999999999985543332 23445678889999
Q ss_pred CCCcc
Q 005502 332 TLNGL 336 (693)
Q Consensus 332 ~~~g~ 336 (693)
+....
T Consensus 335 dsr~~ 339 (398)
T KOG0771|consen 335 DSRYL 339 (398)
T ss_pred CcCcc
Confidence 87654
No 219
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.30 E-value=7e-12 Score=129.49 Aligned_cols=215 Identities=15% Similarity=0.171 Sum_probs=164.1
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCC
Q 005502 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 130 (693)
Q Consensus 51 ~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~ 130 (693)
-.-..+.++.+|..|+.|+.-|.|-.+|+.++++...+ .-...|.++.|..+ .++||+ +....++|||-.-
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei--~v~Etv~Dv~~LHn--eq~~AV-AQK~y~yvYD~~G---- 200 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI--NVMETVRDVTFLHN--EQFFAV-AQKKYVYVYDNNG---- 200 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeee--ehhhhhhhhhhhcc--hHHHHh-hhhceEEEecCCC----
Confidence 34567899999999999999999999999999988887 24567999999987 456655 4678899999763
Q ss_pred CCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecC
Q 005502 131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD 210 (693)
Q Consensus 131 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~ 210 (693)
..++.+.. ..+|..+.|.| --.+|++++..|.++--|+.+++.+..
T Consensus 201 -------tElHClk~-~~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~------------------------- 246 (545)
T KOG1272|consen 201 -------TELHCLKR-HIRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVAS------------------------- 246 (545)
T ss_pred -------cEEeehhh-cCchhhhcccc-hhheeeecccCCceEEEeechhhhhHH-------------------------
Confidence 22444443 46799999999 668899999999999999998874311
Q ss_pred CCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCC
Q 005502 211 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN 290 (693)
Q Consensus 211 ~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspd 290 (693)
.......+..+.-+|. ...+-+|...|+|.+|...+..|+..+ ..|.+ +|.+|++.++
T Consensus 247 ~~t~~G~~~vm~qNP~-NaVih~GhsnGtVSlWSP~skePLvKi--------------------LcH~g-~V~siAv~~~ 304 (545)
T KOG1272|consen 247 IRTGAGRTDVMKQNPY-NAVIHLGHSNGTVSLWSPNSKEPLVKI--------------------LCHRG-PVSSIAVDRG 304 (545)
T ss_pred HHccCCccchhhcCCc-cceEEEcCCCceEEecCCCCcchHHHH--------------------HhcCC-CcceEEECCC
Confidence 1122345667788897 468889999999999999887665433 12444 6999999999
Q ss_pred CCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEecc
Q 005502 291 GEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP 331 (693)
Q Consensus 291 g~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p 331 (693)
|+|++|++.|..|+|||+++-.++...+. ..+...++++.
T Consensus 305 G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sq 344 (545)
T KOG1272|consen 305 GRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQ 344 (545)
T ss_pred CcEEeecccccceeEeeeccccccceeec-CCCcccccccc
Confidence 99999999999999999999665444444 34444444443
No 220
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=5.4e-10 Score=123.74 Aligned_cols=206 Identities=12% Similarity=0.100 Sum_probs=129.5
Q ss_pred cceEEeccCCCcEEEEEECCCCCEEEEEeCC---CcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEE-EEEeCC
Q 005502 41 SQERELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGD 116 (693)
Q Consensus 41 ~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~D---g~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l-~sgs~D 116 (693)
...+.+..|...|.+..|+|+|+.|+..+.+ ..|.+||+.+++... + ..+.+...+++|+|+ |+.| ++.+.+
T Consensus 194 ~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l-~~~~g~~~~~~~SpD--G~~l~~~~s~~ 269 (433)
T PRK04922 194 YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-V-ASFRGINGAPSFSPD--GRRLALTLSRD 269 (433)
T ss_pred CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-e-ccCCCCccCceECCC--CCEEEEEEeCC
Confidence 3445566778889999999999999988743 469999998876543 3 234455668899999 5554 455666
Q ss_pred C--cEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCc--EEEEeCCCCCCCCCCCCCCcc
Q 005502 117 A--EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT--LRQHDFRQGSSCPPAGSSHQE 192 (693)
Q Consensus 117 g--~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~--V~iwDlr~~~~~~~~~~~~~~ 192 (693)
+ .|++||+.... ...+..+.......+|+|++..++++...+|. |.++|+.+++.
T Consensus 270 g~~~Iy~~d~~~g~-----------~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~---------- 328 (433)
T PRK04922 270 GNPEIYVMDLGSRQ-----------LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA---------- 328 (433)
T ss_pred CCceEEEEECCCCC-----------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe----------
Confidence 5 58888887532 23344455556778999955444444445555 55555544321
Q ss_pred cceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCC---cEEEEecCCCCCCcccccCCCCCCccccccc
Q 005502 193 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA---FARLYDRRMLPPLTSCQKRMSPPPCVNYFCP 269 (693)
Q Consensus 193 ~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg---~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~ 269 (693)
..+... .......+|+|+ +++|+..+.++ .|.+||+.++... .+.
T Consensus 329 -------------~~lt~~---g~~~~~~~~SpD-G~~Ia~~~~~~~~~~I~v~d~~~g~~~--------------~Lt- 376 (433)
T PRK04922 329 -------------ERLTFQ---GNYNARASVSPD-GKKIAMVHGSGGQYRIAVMDLSTGSVR--------------TLT- 376 (433)
T ss_pred -------------EEeecC---CCCccCEEECCC-CCEEEEEECCCCceeEEEEECCCCCeE--------------ECC-
Confidence 011100 112346799998 56776654432 6899998765321 110
Q ss_pred CccccCCCCccceEEEEEcCCCCEEEEEec---CCcEEEEECCCC
Q 005502 270 MHLSEHGRSSLHLTHVTFSPNGEEVLLSYS---GEHVYLMDVNHA 311 (693)
Q Consensus 270 ~~~~~~~h~~~~V~~v~fspdg~~L~sgs~---Dg~V~lwDl~~~ 311 (693)
.+. ......|+|||++|+..+. ...|+++++...
T Consensus 377 -----~~~---~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 377 -----PGS---LDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred -----CCC---CCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 000 1345689999999887765 346888888653
No 221
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.27 E-value=7.8e-11 Score=123.80 Aligned_cols=180 Identities=18% Similarity=0.263 Sum_probs=125.8
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEec---cCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCC-----
Q 005502 60 SKGSLLISGSDDTHINVWSYSSRKLLHSIE---TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG----- 131 (693)
Q Consensus 60 ~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~---~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~----- 131 (693)
+.+--|+.|-.-|.|.+.|....+..+.+. .-....|+|++|.|.. +.+|+.+-.+|.+.++|.....+..
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~-~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGS-DSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCC-CceEEEEEecCceEEeeccccccCCCCccc
Confidence 456678888888999999876532221110 1234789999999986 6788888889999999875321110
Q ss_pred -C------------CCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEE
Q 005502 132 -L------------DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (693)
Q Consensus 132 -~------------~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~ 198 (693)
. ....-.|+..+.--...|..++|+| ++.+||+.+.||.+||||..+.+..
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~eLl--------------- 325 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSP-DGKYLATVSQDGFLRIFDFDTQELL--------------- 325 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcC-CCceEEEEecCceEEEeeccHHHHH---------------
Confidence 0 0001133444444456899999999 8899999999999999999876522
Q ss_pred eccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCC
Q 005502 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (693)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 278 (693)
..+...-..+.|++|||| +++|++|+.|.-|.||.+...+.+.. .++|.
T Consensus 326 ----------g~mkSYFGGLLCvcWSPD-GKyIvtGGEDDLVtVwSf~erRVVAR--------------------GqGHk 374 (636)
T KOG2394|consen 326 ----------GVMKSYFGGLLCVCWSPD-GKYIVTGGEDDLVTVWSFEERRVVAR--------------------GQGHK 374 (636)
T ss_pred ----------HHHHhhccceEEEEEcCC-ccEEEecCCcceEEEEEeccceEEEe--------------------ccccc
Confidence 001112346889999998 79999999999999999986554321 24566
Q ss_pred ccceEEEEEc
Q 005502 279 SLHLTHVTFS 288 (693)
Q Consensus 279 ~~~V~~v~fs 288 (693)
. +|+.|+|+
T Consensus 375 S-WVs~VaFD 383 (636)
T KOG2394|consen 375 S-WVSVVAFD 383 (636)
T ss_pred c-ceeeEeec
Confidence 5 78888887
No 222
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=2e-10 Score=116.88 Aligned_cols=236 Identities=10% Similarity=0.100 Sum_probs=157.0
Q ss_pred EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCc----EEEEeccCCCcceEEEEEeeCCCCCEEEEEeCC--Cc
Q 005502 45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK----LLHSIETGHSANVFCTKFVPETSDELVVSGAGD--AE 118 (693)
Q Consensus 45 ~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~----~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~D--g~ 118 (693)
+..+.+++|..+... + ..|++|-.+|.+.+|....+. .+..+ .....+..|.-+|.. ..++++|+.. ..
T Consensus 100 ~~~l~~~~I~gl~~~-d-g~Litc~~sG~l~~~~~k~~d~hss~l~~l--a~g~g~~~~r~~~~~-p~Iva~GGke~~n~ 174 (412)
T KOG3881|consen 100 TVSLGTKSIKGLKLA-D-GTLITCVSSGNLQVRHDKSGDLHSSKLIKL--ATGPGLYDVRQTDTD-PYIVATGGKENINE 174 (412)
T ss_pred ccccccccccchhhc-C-CEEEEEecCCcEEEEeccCCccccccceee--ecCCceeeeccCCCC-CceEecCchhcccc
Confidence 344455666666554 2 367888899999999987432 33334 223567778888774 5688889998 88
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCC--CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceE
Q 005502 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN--PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (693)
Q Consensus 119 V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~--~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~ 196 (693)
+.|||+... ...+.....+.-..--.-.--++++.|.| + ...|++++.-+.||+||++.++.+ ..
T Consensus 175 lkiwdle~~-~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~-g~~~~~fat~T~~hqvR~YDt~~qRRP-----------V~ 241 (412)
T KOG3881|consen 175 LKIWDLEQS-KQIWSAKNVPNDRLGLRVPVWITDIRFLE-GSPNYKFATITRYHQVRLYDTRHQRRP-----------VA 241 (412)
T ss_pred eeeeecccc-eeeeeccCCCCccccceeeeeeccceecC-CCCCceEEEEecceeEEEecCcccCcc-----------ee
Confidence 999999864 11111000000000000112357788887 4 678999999999999999976533 11
Q ss_pred EEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCC
Q 005502 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (693)
Q Consensus 197 l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (693)
-++ -...+++++...|. ++.+++|..-|.+..||+|.++.+... . .+
T Consensus 242 ~fd-------------~~E~~is~~~l~p~-gn~Iy~gn~~g~l~~FD~r~~kl~g~~---------~----------kg 288 (412)
T KOG3881|consen 242 QFD-------------FLENPISSTGLTPS-GNFIYTGNTKGQLAKFDLRGGKLLGCG---------L----------KG 288 (412)
T ss_pred Eec-------------cccCcceeeeecCC-CcEEEEecccchhheecccCceeeccc---------c----------CC
Confidence 111 12457899999997 789999999999999999987643210 1 22
Q ss_pred CCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCC
Q 005502 277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL 333 (693)
Q Consensus 277 h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~ 333 (693)
-.+ .|.+|..+|.+++|++++-|..|+|||+.+.+.....|... ..+.+-+.+..
T Consensus 289 ~tG-sirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs-~lt~il~~~~~ 343 (412)
T KOG3881|consen 289 ITG-SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS-RLTFILLRDDV 343 (412)
T ss_pred ccC-CcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc-cccEEEecCCc
Confidence 233 59999999999999999999999999999955444444433 23344444443
No 223
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=8e-10 Score=111.28 Aligned_cols=227 Identities=16% Similarity=0.231 Sum_probs=144.0
Q ss_pred ccCCCcEEEEEECCCCCEEEEEe-CCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcC
Q 005502 47 EGHQGCVNAISWNSKGSLLISGS-DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (693)
Q Consensus 47 ~gH~~~V~~l~~s~~g~~LaSgs-~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~ 125 (693)
.|| .+|++|+|++||..|++++ .|..|+|||+.++.++.-. .--.+.+.-++|+|+ +.+|.++.-|+..++|+..
T Consensus 193 pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~-~~glgg~slLkwSPd--gd~lfaAt~davfrlw~e~ 268 (445)
T KOG2139|consen 193 PGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI-PKGLGGFSLLKWSPD--GDVLFAATCDAVFRLWQEN 268 (445)
T ss_pred CCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc-ccCCCceeeEEEcCC--CCEEEEecccceeeeehhc
Confidence 355 7899999999999999988 4678999999998877655 345577889999999 6899999999999999766
Q ss_pred CCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCC-CCCcccceEEEeccCCc
Q 005502 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG-SSHQECRNILLDLRCGA 204 (693)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~-~~~~~~~~~l~~~~~~~ 204 (693)
.. .....+..-.++|..-+|+|.+..+|++++..-. +|.+.-...+.... .........+.|+..-.
T Consensus 269 q~----------wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~--lysl~f~~~~~~~~~~~~~k~~lliaDL~e~t 336 (445)
T KOG2139|consen 269 QS----------WTKERWILGSGRVQTACWSPCGSFLLFACSGSPR--LYSLTFDGEDSVFLRPQSIKRVLLIADLQEVT 336 (445)
T ss_pred cc----------ceecceeccCCceeeeeecCCCCEEEEEEcCCce--EEEEeecCCCccccCcccceeeeeeccchhhh
Confidence 42 1122222345699999999988778888776554 45444333222111 11111122223332111
Q ss_pred eeeecCCCCCccceEEEEEcCCCCcEEEEEeCCC--------cEEEEecCCCCCCcccccCCCCCCcccccccCccccCC
Q 005502 205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA--------FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (693)
Q Consensus 205 ~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg--------~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (693)
.......-..++.+++|.|. |.+||+.-..+ .|-+||.+...++.-. ++.... +
T Consensus 337 --i~ag~~l~cgeaq~lawDps-GeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels------------~cg~i~---g 398 (445)
T KOG2139|consen 337 --ICAGQRLCCGEAQCLAWDPS-GEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELS------------YCGMIG---G 398 (445)
T ss_pred --hhcCcccccCccceeeECCC-CCEEEEEEcCCchhhhhhhhhhhhcccccCceEEE------------eccccc---C
Confidence 00011112457889999997 78998876543 3677887764332211 000000 0
Q ss_pred CCccceEEEEEcC---CCCEEEEEecCCcEEEEECCC
Q 005502 277 RSSLHLTHVTFSP---NGEEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 277 h~~~~V~~v~fsp---dg~~L~sgs~Dg~V~lwDl~~ 310 (693)
. +...|+|+| +|..|.++=..|.|.-|++.-
T Consensus 399 e---~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~f 432 (445)
T KOG2139|consen 399 E---YPAYISFGPLKNEGRLLSIAWSTGRIQRYPLTF 432 (445)
T ss_pred C---CCceEEeeecccCCcEEEEEeccCceEeeeeEE
Confidence 1 133466665 577777887888888887654
No 224
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.26 E-value=5.2e-10 Score=111.08 Aligned_cols=222 Identities=11% Similarity=0.116 Sum_probs=140.9
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEE-EEeCC------CcEEEEEc
Q 005502 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV-SGAGD------AEVRLFNL 124 (693)
Q Consensus 52 ~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~-sgs~D------g~V~vwdl 124 (693)
...+++|+.|..-++.|.++| .+||+.+.-+....- ..+.+.+.-+...-.+ ++|+ .|+.+ ..|.|||=
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r-~~~~~G~~~veMLfR~--N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASR-QFIDGGFKIVEMLFRS--NYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhh-ccccCchhhhhHhhhh--ceEEEecCCCCCCCCCceEEEEec
Confidence 344599999999999888776 999998764432222 1222223222322222 3433 44433 46999993
Q ss_pred CCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC-CCCCCC------------------
Q 005502 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ-GSSCPP------------------ 185 (693)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~-~~~~~~------------------ 185 (693)
... .++..+. -..+|++|.+.+ ..|++.- .+.|.+|.... .+....
T Consensus 83 ~k~----------~~i~el~-f~~~I~~V~l~r---~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~ 147 (346)
T KOG2111|consen 83 LKE----------RCIIELS-FNSEIKAVKLRR---DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSN 147 (346)
T ss_pred ccC----------cEEEEEE-eccceeeEEEcC---CeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCC
Confidence 321 4455554 578899999976 3454444 46788887652 221100
Q ss_pred ----CCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCc-EEEEecCCCCCCcccccCCCC
Q 005502 186 ----AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF-ARLYDRRMLPPLTSCQKRMSP 260 (693)
Q Consensus 186 ----~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~-I~lwD~r~~~~~~~~~~~~~~ 260 (693)
..++...+...+.++.......-...+.|...|.|++.+-+ |.++||++..|+ |||||..++.++..++.
T Consensus 148 k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~-Gt~vATaStkGTLIRIFdt~~g~~l~E~RR---- 222 (346)
T KOG2111|consen 148 KSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQ-GTLVATASTKGTLIRIFDTEDGTLLQELRR---- 222 (346)
T ss_pred ceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCC-ccEEEEeccCcEEEEEEEcCCCcEeeeeec----
Confidence 00111112223334333322212334568889999999997 789999999988 69999999876654432
Q ss_pred CCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCC
Q 005502 261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 261 ~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~ 312 (693)
|-....|.+++|||++.+|++++.-|+|+||.+....
T Consensus 223 ---------------G~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 223 ---------------GVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred ---------------CCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 2222359999999999999999999999999998743
No 225
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=1e-09 Score=121.22 Aligned_cols=228 Identities=11% Similarity=0.072 Sum_probs=138.6
Q ss_pred eEEeccCCCcEEEEEECCCCCEEEEEeCC---CcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEE-EEeCCCc
Q 005502 43 ERELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV-SGAGDAE 118 (693)
Q Consensus 43 ~~~l~gH~~~V~~l~~s~~g~~LaSgs~D---g~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~-sgs~Dg~ 118 (693)
...+..+...|.+.+|+|+|+.|+..+.+ ..|.+||+.+++... + ....+.+.+..|+|+ ++.|+ +.+.++.
T Consensus 188 ~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l-~~~~g~~~~~~~SPD--G~~la~~~~~~g~ 263 (427)
T PRK02889 188 AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-V-ANFKGSNSAPAWSPD--GRTLAVALSRDGN 263 (427)
T ss_pred ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-e-ecCCCCccceEECCC--CCEEEEEEccCCC
Confidence 34556778899999999999999887743 359999998886543 3 234456678999999 56554 6778888
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEE
Q 005502 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (693)
Q Consensus 119 V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~ 198 (693)
..||.+....+ ....+..+...+....|+|++..+++++..+|...+|.+....
T Consensus 264 ~~Iy~~d~~~~---------~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~----------------- 317 (427)
T PRK02889 264 SQIYTVNADGS---------GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG----------------- 317 (427)
T ss_pred ceEEEEECCCC---------CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC-----------------
Confidence 88887654221 1333444555567789999554455454456777777654221
Q ss_pred eccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCC---cEEEEecCCCCCCcccccCCCCCCcccccccCccccC
Q 005502 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA---FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (693)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg---~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (693)
+....+... .......+|+|+ +++|+..+.++ .|.+||+.++... .+. .
T Consensus 318 ----g~~~~lt~~---g~~~~~~~~SpD-G~~Ia~~s~~~g~~~I~v~d~~~g~~~--------------~lt------~ 369 (427)
T PRK02889 318 ----GAAQRVTFT---GSYNTSPRISPD-GKLLAYISRVGGAFKLYVQDLATGQVT--------------ALT------D 369 (427)
T ss_pred ----CceEEEecC---CCCcCceEECCC-CCEEEEEEccCCcEEEEEEECCCCCeE--------------Ecc------C
Confidence 000011110 012235689997 67777666554 5999998765311 110 0
Q ss_pred CCCccceEEEEEcCCCCEEEEEecCC---cEEEEECCCCCcceEEeecCCCceeEEeccC
Q 005502 276 GRSSLHLTHVTFSPNGEEVLLSYSGE---HVYLMDVNHAGGRAMRYTVGDASKIMSFTPT 332 (693)
Q Consensus 276 ~h~~~~V~~v~fspdg~~L~sgs~Dg---~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~ 332 (693)
+. ......|+|||++|+.++.++ .+++.++.. ........+.......+|+|.
T Consensus 370 ~~---~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g-~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 370 TT---RDESPSFAPNGRYILYATQQGGRSVLAAVSSDG-RIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CC---CccCceECCCCCEEEEEEecCCCEEEEEEECCC-CceEEeecCCCCCCCCccCCC
Confidence 00 134679999999998877643 466767743 323223223333444556553
No 226
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=1.4e-09 Score=120.61 Aligned_cols=206 Identities=11% Similarity=0.083 Sum_probs=131.4
Q ss_pred cceEEeccCCCcEEEEEECCCCCEEEEEeC---CCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEE-EEEeCC
Q 005502 41 SQERELEGHQGCVNAISWNSKGSLLISGSD---DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGD 116 (693)
Q Consensus 41 ~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~---Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l-~sgs~D 116 (693)
...+.+..|...|.+.+|+|+|+.|+..+. +..|.+||+.+++.. .+ ..+.+.+.+.+|+|+ |+.| ++.+.+
T Consensus 192 ~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l-~~~~g~~~~~~~SPD--G~~la~~~~~~ 267 (435)
T PRK05137 192 ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LV-GNFPGMTFAPRFSPD--GRKVVMSLSQG 267 (435)
T ss_pred CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-Ee-ecCCCcccCcEECCC--CCEEEEEEecC
Confidence 344567788889999999999999988764 467999999887654 33 456677889999999 5554 566666
Q ss_pred Cc--EEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEe-CCC--cEEEEeCCCCCCCCCCCCCCc
Q 005502 117 AE--VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-EDG--TLRQHDFRQGSSCPPAGSSHQ 191 (693)
Q Consensus 117 g~--V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs-~Dg--~V~iwDlr~~~~~~~~~~~~~ 191 (693)
+. |.+||+.... ...+..+........|+|++ ..|+..+ .+| .|.+||+..+..
T Consensus 268 g~~~Iy~~d~~~~~-----------~~~Lt~~~~~~~~~~~spDG-~~i~f~s~~~g~~~Iy~~d~~g~~~--------- 326 (435)
T PRK05137 268 GNTDIYTMDLRSGT-----------TTRLTDSPAIDTSPSYSPDG-SQIVFESDRSGSPQLYVMNADGSNP--------- 326 (435)
T ss_pred CCceEEEEECCCCc-----------eEEccCCCCccCceeEcCCC-CEEEEEECCCCCCeEEEEECCCCCe---------
Confidence 66 6666776431 33344455566778999954 5444444 444 566677654321
Q ss_pred ccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCC---CcEEEEecCCCCCCcccccCCCCCCcccccc
Q 005502 192 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPPCVNYFC 268 (693)
Q Consensus 192 ~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~D---g~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~ 268 (693)
..+... ...+....|+|+ ++.|+..+.+ ..|.+||+..... ..+.
T Consensus 327 --------------~~lt~~---~~~~~~~~~Spd-G~~ia~~~~~~~~~~i~~~d~~~~~~--------------~~lt 374 (435)
T PRK05137 327 --------------RRISFG---GGRYSTPVWSPR-GDLIAFTKQGGGQFSIGVMKPDGSGE--------------RILT 374 (435)
T ss_pred --------------EEeecC---CCcccCeEECCC-CCEEEEEEcCCCceEEEEEECCCCce--------------Eecc
Confidence 111111 123456789998 5666665543 3577888653211 1110
Q ss_pred cCccccCCCCccceEEEEEcCCCCEEEEEecC------CcEEEEECCCCC
Q 005502 269 PMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG------EHVYLMDVNHAG 312 (693)
Q Consensus 269 ~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~D------g~V~lwDl~~~~ 312 (693)
.+. .+..+.|+|||+.|+..+.+ ..++++|+..+.
T Consensus 375 ------~~~---~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 375 ------SGF---LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred ------CCC---CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 001 25568999999998766542 368888987744
No 227
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=8.1e-10 Score=122.75 Aligned_cols=271 Identities=13% Similarity=0.154 Sum_probs=171.1
Q ss_pred CCcCcccccchhhh--ccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEE
Q 005502 24 PDVNHSLQMHSSLV--RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 101 (693)
Q Consensus 24 ~~~~~~l~~~~~~i--~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f 101 (693)
.+.+.++.+|..+- ..-...+.|.-|...|++++|+++|.+|.||+..+.+.+|.+.+++ +++...-.++|..+.+
T Consensus 223 ~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~v 300 (792)
T KOG1963|consen 223 GDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVV 300 (792)
T ss_pred eccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC--cccccccCCeeEEEEE
Confidence 46668899998877 3333456788899999999999999999999999999999999987 4555677899999999
Q ss_pred eeCCCCCEEEEEeCCCcEEEEEcCCCCCCCC-CCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 005502 102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGL-DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180 (693)
Q Consensus 102 ~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~-~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~ 180 (693)
+|+ +.+.+....|+.|++-.......... .......-..-....+-.+.++++| ..+.++-.+..|.|.+||+-+.
T Consensus 301 S~d--s~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td 377 (792)
T KOG1963|consen 301 SPD--SDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTD 377 (792)
T ss_pred cCC--CCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEecccc
Confidence 999 57888888899999987753211110 0000000000112345567788888 5566777888899999998766
Q ss_pred CCCCCCC-------CCC---------------------------------cccceEEEeccCCce----eeecCCCCCcc
Q 005502 181 SSCPPAG-------SSH---------------------------------QECRNILLDLRCGAK----RSLADPPKQTL 216 (693)
Q Consensus 181 ~~~~~~~-------~~~---------------------------------~~~~~~l~~~~~~~~----~~l~~~~~~~~ 216 (693)
+...... .+. .+....+|....... ......|-...
T Consensus 378 ~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~ 457 (792)
T KOG1963|consen 378 STIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNA 457 (792)
T ss_pred ceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCce
Confidence 5331000 000 000111121111110 01111222233
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEE
Q 005502 217 SLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL 296 (693)
Q Consensus 217 ~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~s 296 (693)
.+..+..+|.+...+++++.||.++||-+...+.+.+.. ....+.... . ....+++.++|+.||. +++
T Consensus 458 ~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~--------s~W~c~~i~--s-y~k~~i~a~~fs~dGs-lla 525 (792)
T KOG1963|consen 458 FVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKS--------SNWTCKAIG--S-YHKTPITALCFSQDGS-LLA 525 (792)
T ss_pred eEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCc--------cceEEeeee--c-cccCcccchhhcCCCc-EEE
Confidence 344445556555589999999999999986554332210 000000000 0 1233699999999996 566
Q ss_pred EecCCcEEEEECCCC
Q 005502 297 SYSGEHVYLMDVNHA 311 (693)
Q Consensus 297 gs~Dg~V~lwDl~~~ 311 (693)
.+.++.|.+||..+.
T Consensus 526 ~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 526 VSFDDTITIWDYDTK 540 (792)
T ss_pred EecCCEEEEecCCCh
Confidence 667889999999983
No 228
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=1.2e-09 Score=120.70 Aligned_cols=223 Identities=11% Similarity=0.104 Sum_probs=133.3
Q ss_pred eEEeccCCCcEEEEEECCCCCEEEEEe---CCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEE-EeCCC-
Q 005502 43 ERELEGHQGCVNAISWNSKGSLLISGS---DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVS-GAGDA- 117 (693)
Q Consensus 43 ~~~l~gH~~~V~~l~~s~~g~~LaSgs---~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~s-gs~Dg- 117 (693)
.+.+..+...+.+.+|+|+|+.||..+ .+..|.+|++.+++... + ....+.+..+.|+|+ |+.|+. .+.++
T Consensus 191 ~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l-~~~~~~~~~~~~SPD--G~~La~~~~~~g~ 266 (429)
T PRK03629 191 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-V-ASFPRHNGAPAFSPD--GSKLAFALSKTGS 266 (429)
T ss_pred CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-c-cCCCCCcCCeEECCC--CCEEEEEEcCCCC
Confidence 344555677899999999999998754 24579999998875433 2 123344557899999 566654 44455
Q ss_pred -cEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEE--eCCCCCCCCCCCCCCcccc
Q 005502 118 -EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQH--DFRQGSSCPPAGSSHQECR 194 (693)
Q Consensus 118 -~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iw--Dlr~~~~~~~~~~~~~~~~ 194 (693)
.|.+||+.... ...+..+...+....|+|++..++++...+|...+| |+.++.
T Consensus 267 ~~I~~~d~~tg~-----------~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~------------- 322 (429)
T PRK03629 267 LNLYVMDLASGQ-----------IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA------------- 322 (429)
T ss_pred cEEEEEECCCCC-----------EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC-------------
Confidence 48888987531 223333445678899999544444444445555555 443322
Q ss_pred eEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCC---CcEEEEecCCCCCCcccccCCCCCCcccccccCc
Q 005502 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 271 (693)
Q Consensus 195 ~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~D---g~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (693)
...+.. .........|+|+ +++|+..+.+ ..|.+||+.++... .+...
T Consensus 323 ----------~~~lt~---~~~~~~~~~~SpD-G~~Ia~~~~~~g~~~I~~~dl~~g~~~--------------~Lt~~- 373 (429)
T PRK03629 323 ----------PQRITW---EGSQNQDADVSSD-GKFMVMVSSNGGQQHIAKQDLATGGVQ--------------VLTDT- 373 (429)
T ss_pred ----------eEEeec---CCCCccCEEECCC-CCEEEEEEccCCCceEEEEECCCCCeE--------------EeCCC-
Confidence 111111 1122346789998 5666655443 35888898765311 11000
Q ss_pred cccCCCCccceEEEEEcCCCCEEEEEecCC---cEEEEECCCCCcceEEeecCCCceeEEecc
Q 005502 272 LSEHGRSSLHLTHVTFSPNGEEVLLSYSGE---HVYLMDVNHAGGRAMRYTVGDASKIMSFTP 331 (693)
Q Consensus 272 ~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg---~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p 331 (693)
. ......|+|||++|+.++.++ .++++++.... ...+..+.......+|+|
T Consensus 374 -----~---~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~-~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 374 -----F---LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARLPATDGQVKFPAWSP 427 (429)
T ss_pred -----C---CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC-eEECccCCCCcCCcccCC
Confidence 0 123578999999999988765 37888886533 333333344455566665
No 229
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.24 E-value=1.6e-10 Score=115.44 Aligned_cols=241 Identities=14% Similarity=0.221 Sum_probs=156.3
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcE----EEEeccCC------------CcceEEEEEeeCCCCCEEEEE
Q 005502 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL----LHSIETGH------------SANVFCTKFVPETSDELVVSG 113 (693)
Q Consensus 50 ~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~----~~~l~~~h------------~~~I~sl~f~p~~~~~~l~sg 113 (693)
.+-|.++.|...|.+||||..+|+|.++.-..... ..+..+.| ...|..+.|++..+...++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 45789999999999999999999999997543221 22222334 246889999998777788888
Q ss_pred eCCCcEEEEEcCCCCCCCCC-------------------------CCCCCCceee-ccCCCCeEEEEEecCCCcEEEEEe
Q 005502 114 AGDAEVRLFNLSRFSGRGLD-------------------------DNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSAS 167 (693)
Q Consensus 114 s~Dg~V~vwdl~~~~~~~~~-------------------------~~~~~~~~~~-~~h~~~V~~l~~sp~~~~~l~Sgs 167 (693)
..|.+|++|.+.....+... .....|.+.+ .+|+-.|.+|+++. +...++| +
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~lS-A 182 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFLS-A 182 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEee-c
Confidence 99999999998753322200 0001112222 35888899999987 4455544 4
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCC
Q 005502 168 EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (693)
Q Consensus 168 ~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~ 247 (693)
.|=.|.+|.+.-...+ -.+.|+....... -+..|++..|+|...++++-.++.|.|++.|+|.
T Consensus 183 DdLRINLWnlei~d~s-----------FnIVDIKP~nmEe------LteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~ 245 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQS-----------FNIVDIKPANMEE------LTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQ 245 (433)
T ss_pred cceeeeeccccccCCc-----------eeEEEccccCHHH------HHHHHhhhccCHhHccEEEEecCCCcEEEeechh
Confidence 6788999998754322 2344443322211 1235788999999889999999999999999995
Q ss_pred CCCC----cccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEee
Q 005502 248 LPPL----TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYT 319 (693)
Q Consensus 248 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~ 319 (693)
...- ..+..+.. +. -..|...- -..|..+.|+++|+|+++-.. -+|.+||++....+...+.
T Consensus 246 ~aLCd~hsKlfEeped-p~-~rsffsei-------IsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~ 311 (433)
T KOG1354|consen 246 SALCDAHSKLFEEPED-PS-SRSFFSEI-------ISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYP 311 (433)
T ss_pred hhhhcchhhhhccccC-Cc-chhhHHHH-------hhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEe
Confidence 3211 01111111 11 11110000 114889999999999987643 4899999977554544443
No 230
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.24 E-value=8.2e-11 Score=113.78 Aligned_cols=163 Identities=17% Similarity=0.272 Sum_probs=124.0
Q ss_pred cCCCcEEEEEECCC-CC--EEEEEeCCCcEEEEECCCCcEEEEec---------cCCCcceEEEEEeeCCCCCEEEEEeC
Q 005502 48 GHQGCVNAISWNSK-GS--LLISGSDDTHINVWSYSSRKLLHSIE---------TGHSANVFCTKFVPETSDELVVSGAG 115 (693)
Q Consensus 48 gH~~~V~~l~~s~~-g~--~LaSgs~Dg~I~IWd~~~~~~~~~l~---------~~h~~~I~sl~f~p~~~~~~l~sgs~ 115 (693)
+..+.|.|..|... ++ +|+.|-.+|.|.+||+.++..+..+. ..|..+|.++.|.+.. ..=++|+.
T Consensus 148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~--~rGisgga 225 (323)
T KOG0322|consen 148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC--DRGISGGA 225 (323)
T ss_pred cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh--cCCcCCCc
Confidence 46788999987653 33 66778899999999999874433321 4689999999999764 44567888
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccce
Q 005502 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (693)
Q Consensus 116 Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~ 195 (693)
+..+..|.+....+... ......-..-.|..+.+-| ++++++|++.|+.||+|..++..+.
T Consensus 226 ~dkl~~~Sl~~s~gslq------~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pL------------ 286 (323)
T KOG0322|consen 226 DDKLVMYSLNHSTGSLQ------IRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPL------------ 286 (323)
T ss_pred cccceeeeeccccCccc------ccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCch------------
Confidence 88899999987544321 1112222345688888889 7799999999999999999987643
Q ss_pred EEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEec
Q 005502 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR 245 (693)
Q Consensus 196 ~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~ 245 (693)
....-|...|.+++|+|+ ..++|+++.|++|.+|++
T Consensus 287 -------------AVLkyHsagvn~vAfspd-~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 287 -------------AVLKYHSAGVNAVAFSPD-CELMAAASKDARISLWKL 322 (323)
T ss_pred -------------hhhhhhhcceeEEEeCCC-CchhhhccCCceEEeeec
Confidence 223346678999999997 679999999999999986
No 231
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.23 E-value=2.9e-10 Score=112.98 Aligned_cols=268 Identities=13% Similarity=0.157 Sum_probs=173.0
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCC
Q 005502 55 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD 134 (693)
Q Consensus 55 ~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 134 (693)
-.+|+|+|+++|+++.- ++.|=|.++-+..+.+ ..-..|.-+.|..++ -.+|.....|+.|.+|++...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf--~cldki~yieW~ads-~~ilC~~yk~~~vqvwsl~Qp------- 81 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF--LCLDKIVYIEWKADS-CHILCVAYKDPKVQVWSLVQP------- 81 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHH--HHHHHhhheeeeccc-eeeeeeeeccceEEEEEeecc-------
Confidence 35799999999999875 8888898877655544 124567888998875 456777788999999999965
Q ss_pred CCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCC--------CCCCc-----------ccc-
Q 005502 135 NAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA--------GSSHQ-----------ECR- 194 (693)
Q Consensus 135 ~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~--------~~~~~-----------~~~- 194 (693)
+-...+......+.+++|+|++.++|.+...|-.|.+|.+.+....... ..-+. +|.
T Consensus 82 ---ew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkd 158 (447)
T KOG4497|consen 82 ---EWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKD 158 (447)
T ss_pred ---eeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHH
Confidence 3455666778889999999987789999999999999999876422000 00000 010
Q ss_pred ------------------------eEEEeccCCceeeecCC--------CCCccceEEEEEcCCCCcEEEEEeCCCcEEE
Q 005502 195 ------------------------NILLDLRCGAKRSLADP--------PKQTLSLKSCDISSTRPHLLLVGGSDAFARL 242 (693)
Q Consensus 195 ------------------------~~l~~~~~~~~~~l~~~--------~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~l 242 (693)
.+-|.. .|....+... -.....+..++|+|. +++|++|+.|+.+|+
T Consensus 159 yv~i~~c~~W~ll~~f~~dT~DltgieWsP-dg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~-~qflavGsyD~~lrv 236 (447)
T KOG4497|consen 159 YVQISSCKAWILLKEFKLDTIDLTGIEWSP-DGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPC-NQFLAVGSYDQMLRV 236 (447)
T ss_pred HHHHHhhHHHHHHHhcCCCcccccCceECC-CCcEEEEecchhhheeeeeeeccceeEEEeccc-cceEEeeccchhhhh
Confidence 000000 0111111110 012356888999996 689999999999999
Q ss_pred EecCCCCCCcccccCC-------------------CCCCcccccccCcc---------------------------ccCC
Q 005502 243 YDRRMLPPLTSCQKRM-------------------SPPPCVNYFCPMHL---------------------------SEHG 276 (693)
Q Consensus 243 wD~r~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~---------------------------~~~~ 276 (693)
.+--+.++...+.+.. ....|+. |.|... ....
T Consensus 237 lnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLs-f~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~p 315 (447)
T KOG4497|consen 237 LNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLS-FTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFP 315 (447)
T ss_pred hceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccc-cCCCccccCccccchhhhhhhhcceeeecccCCCCCC
Confidence 8876665544332210 0011111 111000 0011
Q ss_pred CCccceEEEEEcCCCCEEEEEec--CCcEEEEECCCCCcceEEeecCCCceeEEeccCCCcccccC
Q 005502 277 RSSLHLTHVTFSPNGEEVLLSYS--GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQP 340 (693)
Q Consensus 277 h~~~~V~~v~fspdg~~L~sgs~--Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~ 340 (693)
.+...+..++|++|..++++-.. -+.+.+||++..+.-.+.. ..++++.+.|.|....+..-.
T Consensus 316 nPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vct 380 (447)
T KOG4497|consen 316 NPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCT 380 (447)
T ss_pred CcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEc
Confidence 22335788999999999998766 3689999999965444433 467788889999876654433
No 232
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.20 E-value=1.7e-10 Score=121.04 Aligned_cols=206 Identities=14% Similarity=0.182 Sum_probs=144.0
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCcee
Q 005502 63 SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSAL 142 (693)
Q Consensus 63 ~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~ 142 (693)
..|+.++.||++.|.+- .++....+ ..|.+.|.+-.|+|+ |.-|+|++.||.|++|.-.. -...+
T Consensus 76 d~~~i~s~DGkf~il~k-~~rVE~sv-~AH~~A~~~gRW~~d--GtgLlt~GEDG~iKiWSrsG-----------MLRSt 140 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNK-SARVERSI-SAHAAAISSGRWSPD--GAGLLTAGEDGVIKIWSRSG-----------MLRST 140 (737)
T ss_pred ceEEEEcCCceEEEecc-cchhhhhh-hhhhhhhhhcccCCC--CceeeeecCCceEEEEeccc-----------hHHHH
Confidence 57888999999999884 56666677 799999999999999 78899999999999997652 12233
Q ss_pred eccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEE
Q 005502 143 YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCD 222 (693)
Q Consensus 143 ~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~ 222 (693)
+.....+|+|++|.|++.+++.+.+. .+.+=-+..... .+ .-..|..-|.++.
T Consensus 141 l~Q~~~~v~c~~W~p~S~~vl~c~g~--h~~IKpL~~n~k------------~i-------------~WkAHDGiiL~~~ 193 (737)
T KOG1524|consen 141 VVQNEESIRCARWAPNSNSIVFCQGG--HISIKPLAANSK------------II-------------RWRAHDGLVLSLS 193 (737)
T ss_pred HhhcCceeEEEEECCCCCceEEecCC--eEEEeecccccc------------ee-------------EEeccCcEEEEee
Confidence 34456789999999988888876654 343333322110 11 1124677899999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCc
Q 005502 223 ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEH 302 (693)
Q Consensus 223 ~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~ 302 (693)
|+|. .+++++|+.|-..++||-.-. ++.. .....++|++++|.|+ +.+++++.+ +
T Consensus 194 W~~~-s~lI~sgGED~kfKvWD~~G~-~Lf~---------------------S~~~ey~ITSva~npd-~~~~v~S~n-t 248 (737)
T KOG1524|consen 194 WSTQ-SNIIASGGEDFRFKIWDAQGA-NLFT---------------------SAAEEYAITSVAFNPE-KDYLLWSYN-T 248 (737)
T ss_pred cCcc-ccceeecCCceeEEeecccCc-cccc---------------------CChhccceeeeeeccc-cceeeeeee-e
Confidence 9997 689999999999999997532 1111 1122347999999999 555555532 4
Q ss_pred EEEEECCCCCcceEEeecCCCceeEEeccCCCcccccCCccccc
Q 005502 303 VYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFL 346 (693)
Q Consensus 303 V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~ 346 (693)
.++=..+. +.+-.++|+|+...++.....++.+
T Consensus 249 ~R~~~p~~-----------GSifnlsWS~DGTQ~a~gt~~G~v~ 281 (737)
T KOG1524|consen 249 ARFSSPRV-----------GSIFNLSWSADGTQATCGTSTGQLI 281 (737)
T ss_pred eeecCCCc-----------cceEEEEEcCCCceeeccccCceEE
Confidence 44222222 2344578999888877777666654
No 233
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.20 E-value=2e-10 Score=119.62 Aligned_cols=283 Identities=15% Similarity=0.112 Sum_probs=185.0
Q ss_pred cccccchhhhccccceEEeccCCCcEEEEEECCC--CCEEEEEeCCCcEEEEECCCC-cEE-EEeccCCCcceEEEEEee
Q 005502 28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSK--GSLLISGSDDTHINVWSYSSR-KLL-HSIETGHSANVFCTKFVP 103 (693)
Q Consensus 28 ~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~--g~~LaSgs~Dg~I~IWd~~~~-~~~-~~l~~~h~~~I~sl~f~p 103 (693)
.++-+|++...+..+ .-..||...|..-.|-|. ...+++++.||.|++=.+... .+. ......|.++|.-++.-|
T Consensus 164 ~~vv~WdW~~~~~~l-~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p 242 (559)
T KOG1334|consen 164 LQVVVWDWVSGSPKL-SFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEP 242 (559)
T ss_pred ceEEeehhhccCccc-ccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecC
Confidence 444455544332211 122479999999899884 468999999999998876543 333 122257999999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCC---CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 005502 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR---RVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180 (693)
Q Consensus 104 ~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~ 180 (693)
.+ ...|.|++.|+.|.-+|++..... .....-..+.. ....|+..|.+.+.|++++.|-.+++||.|.-
T Consensus 243 ~s-p~~f~S~geD~~v~~~Dlr~~~pa-------~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~ 314 (559)
T KOG1334|consen 243 DS-PKPFLSCGEDAVVFHIDLRQDVPA-------EKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRI 314 (559)
T ss_pred CC-CCcccccccccceeeeeeccCCcc-------ceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccch
Confidence 97 789999999999999999864221 11222223333 56889999999999999999999999999875
Q ss_pred CCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCC
Q 005502 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP 260 (693)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~ 260 (693)
..-......+..|...+.. .....|++++|+.+.+ -|+++-+|-.|++|...++.--... +..+
T Consensus 315 ~~e~~n~~~~~f~p~hl~~-------------d~~v~ITgl~Ysh~~s-ElLaSYnDe~IYLF~~~~~~G~~p~--~~s~ 378 (559)
T KOG1334|consen 315 DKEENNGVLDKFCPHHLVE-------------DDPVNITGLVYSHDGS-ELLASYNDEDIYLFNKSMGDGSEPD--PSSP 378 (559)
T ss_pred hhccccchhhhcCCccccc-------------cCcccceeEEecCCcc-ceeeeecccceEEeccccccCCCCC--CCcc
Confidence 5322222122222222211 3356799999998744 5556678889999955443210000 0000
Q ss_pred CCcccccccCccccCCCCcc-ceEEEEE-cCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCcccc
Q 005502 261 PPCVNYFCPMHLSEHGRSSL-HLTHVTF-SPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLEL 338 (693)
Q Consensus 261 ~~~~~~~~~~~~~~~~h~~~-~V~~v~f-spdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~ 338 (693)
...+.+... +||.+. .|..+-| -|...|+++|+..|.|.||+-.+++....+..-.+.++++..+|...-++.
T Consensus 379 ---~~~~~k~vY--KGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAs 453 (559)
T KOG1334|consen 379 ---REQYVKRVY--KGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLAS 453 (559)
T ss_pred ---hhhccchhh--cccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhc
Confidence 011111111 334332 3666754 589999999999999999999998766666666667777888887665543
Q ss_pred cC
Q 005502 339 QP 340 (693)
Q Consensus 339 ~~ 340 (693)
..
T Consensus 454 SG 455 (559)
T KOG1334|consen 454 SG 455 (559)
T ss_pred cC
Confidence 33
No 234
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.18 E-value=8.4e-10 Score=125.94 Aligned_cols=216 Identities=17% Similarity=0.232 Sum_probs=144.1
Q ss_pred EECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEe
Q 005502 77 WSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 156 (693)
Q Consensus 77 Wd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 156 (693)
|++ .|..+..+ ..|...|..++.++.. +.+|+||+.||+|++|+.+...+.. .......++..-..++..+...
T Consensus 1034 W~p-~G~lVAhL-~Ehs~~v~k~a~s~~~-~s~FvsgS~DGtVKvW~~~k~~~~~---~s~rS~ltys~~~sr~~~vt~~ 1107 (1431)
T KOG1240|consen 1034 WNP-RGILVAHL-HEHSSAVIKLAVSSEH-TSLFVSGSDDGTVKVWNLRKLEGEG---GSARSELTYSPEGSRVEKVTMC 1107 (1431)
T ss_pred CCc-cceEeehh-hhccccccceeecCCC-CceEEEecCCceEEEeeehhhhcCc---ceeeeeEEEeccCCceEEEEec
Confidence 665 46778878 6899999999998874 5899999999999999998654321 1223344555457889999998
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCC-cEEEEEe
Q 005502 157 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRP-HLLLVGG 235 (693)
Q Consensus 157 p~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~-~~Latgs 235 (693)
+ +++.||.++.||.|++.++...... +..+... .+.........+..-++..... ..|+.+.
T Consensus 1108 ~-~~~~~Av~t~DG~v~~~~id~~~~~------~~~~~~~----------ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T 1170 (1431)
T KOG1240|consen 1108 G-NGDQFAVSTKDGSVRVLRIDHYNVS------KRVATQV----------RIPNLKKDGVVVSMHAFTAIVQSHVLVYAT 1170 (1431)
T ss_pred c-CCCeEEEEcCCCeEEEEEccccccc------cceeeee----------ecccccCCCceEEeecccccccceeEEEEE
Confidence 8 7789999999999999998763211 0000000 0001111122333334433323 3788888
Q ss_pred CCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcc-
Q 005502 236 SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR- 314 (693)
Q Consensus 236 ~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~- 314 (693)
.-+.|..||+|+.......+.. ..| +.|++++.+|.+.++++|...|.+-+||++-+...
T Consensus 1171 ~~~~iv~~D~r~~~~~w~lk~~-----------------~~h--G~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~ 1231 (1431)
T KOG1240|consen 1171 DLSRIVSWDTRMRHDAWRLKNQ-----------------LRH--GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPIL 1231 (1431)
T ss_pred eccceEEecchhhhhHHhhhcC-----------------ccc--cceeEEEecCCceEEEEecCCceEEEEEeecCceee
Confidence 9999999999987654333211 012 25999999999999999999999999999984322
Q ss_pred eEEeecCCCceeEEeccCCC
Q 005502 315 AMRYTVGDASKIMSFTPTLN 334 (693)
Q Consensus 315 ~~~~~~~~~~~~~~~~p~~~ 334 (693)
.+.+...-+++.+...|...
T Consensus 1232 sw~~P~~~~i~~v~~~~~~~ 1251 (1431)
T KOG1240|consen 1232 SWEHPARAPIRHVWLCPTYP 1251 (1431)
T ss_pred cccCcccCCcceEEeeccCC
Confidence 22333334455566666543
No 235
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.18 E-value=2.9e-11 Score=125.02 Aligned_cols=216 Identities=15% Similarity=0.191 Sum_probs=157.7
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCC
Q 005502 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG 131 (693)
Q Consensus 52 ~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~ 131 (693)
.|.++.|-.+.+++|++.. ..+.|||- .|..++.+ ..| ..|..+.|.|. .-+|++++..|.++..|+..+
T Consensus 172 tv~Dv~~LHneq~~AVAQK-~y~yvYD~-~GtElHCl-k~~-~~v~rLeFLPy--HfLL~~~~~~G~L~Y~DVS~G---- 241 (545)
T KOG1272|consen 172 TVRDVTFLHNEQFFAVAQK-KYVYVYDN-NGTELHCL-KRH-IRVARLEFLPY--HFLLVAASEAGFLKYQDVSTG---- 241 (545)
T ss_pred hhhhhhhhcchHHHHhhhh-ceEEEecC-CCcEEeeh-hhc-Cchhhhcccch--hheeeecccCCceEEEeechh----
Confidence 4556666666777777754 67999995 57788888 333 57999999999 478889999999999999976
Q ss_pred CCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCC
Q 005502 132 LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP 211 (693)
Q Consensus 132 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 211 (693)
+.+..+..-.+++..++-+| -..++-+|...|+|.+|.....++. ...
T Consensus 242 ------klVa~~~t~~G~~~vm~qNP-~NaVih~GhsnGtVSlWSP~skePL-------------------------vKi 289 (545)
T KOG1272|consen 242 ------KLVASIRTGAGRTDVMKQNP-YNAVIHLGHSNGTVSLWSPNSKEPL-------------------------VKI 289 (545)
T ss_pred ------hhhHHHHccCCccchhhcCC-ccceEEEcCCCceEEecCCCCcchH-------------------------HHH
Confidence 55777777788899999999 4468889999999999997765532 222
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCC
Q 005502 212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG 291 (693)
Q Consensus 212 ~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg 291 (693)
-.|..+|.+|++.+. |+++||.+.|..|+|||+|+...+.+... ..+...++||..|
T Consensus 290 LcH~g~V~siAv~~~-G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t----------------------p~~a~~ls~Sqkg 346 (545)
T KOG1272|consen 290 LCHRGPVSSIAVDRG-GRYMATTGLDRKVKIWDLRNFYQLHTYRT----------------------PHPASNLSLSQKG 346 (545)
T ss_pred HhcCCCcceEEECCC-CcEEeecccccceeEeeeccccccceeec----------------------CCCcccccccccc
Confidence 356789999999996 89999999999999999998764433211 1146678888776
Q ss_pred CEEEEEecCCcEEEEE-CCCCC----cceEEeecCCCceeEEeccCCC
Q 005502 292 EEVLLSYSGEHVYLMD-VNHAG----GRAMRYTVGDASKIMSFTPTLN 334 (693)
Q Consensus 292 ~~L~sgs~Dg~V~lwD-l~~~~----~~~~~~~~~~~~~~~~~~p~~~ 334 (693)
+++.+....|.||. .-.+. .+-+....+.++..+.|-|..+
T Consensus 347 --lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~ED 392 (545)
T KOG1272|consen 347 --LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYED 392 (545)
T ss_pred --ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHH
Confidence 56666777999994 33311 1222223344666666777533
No 236
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.17 E-value=1e-08 Score=101.99 Aligned_cols=185 Identities=20% Similarity=0.328 Sum_probs=132.0
Q ss_pred CC-cCcccccchhhhccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECC-CCcEEEEeccCC-CcceEEEE
Q 005502 24 PD-VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS-SRKLLHSIETGH-SANVFCTK 100 (693)
Q Consensus 24 ~~-~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~-~~~~~~~l~~~h-~~~I~sl~ 100 (693)
|. -.+++-+|+....+. +.+|. ...+|.++.+.++ .|++.- ..+|.||... ..+.++.+.+.. ...+. +
T Consensus 70 pky~pNkviIWDD~k~~~--i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC--~ 141 (346)
T KOG2111|consen 70 PKYPPNKVIIWDDLKERC--IIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLC--S 141 (346)
T ss_pred CCCCCceEEEEecccCcE--EEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceE--e
Confidence 44 457888998665554 33443 3568999998865 566654 4689999998 456677664322 33333 3
Q ss_pred EeeCCCCCEEEE-EeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCc-EEEEeCC
Q 005502 101 FVPETSDELVVS-GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT-LRQHDFR 178 (693)
Q Consensus 101 f~p~~~~~~l~s-gs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~-V~iwDlr 178 (693)
.+|..+..+||. |-.-|.|+|-|+..... .+...+.+|...|.+++.+. .+.++||+|..|+ |||||..
T Consensus 142 ~~~~~~k~~LafPg~k~GqvQi~dL~~~~~--------~~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~ 212 (346)
T KOG2111|consen 142 LCPTSNKSLLAFPGFKTGQVQIVDLASTKP--------NAPSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTE 212 (346)
T ss_pred ecCCCCceEEEcCCCccceEEEEEhhhcCc--------CCceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcC
Confidence 445542344443 33568999999985421 23567889999999999998 7799999999997 7899999
Q ss_pred CCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC
Q 005502 179 QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (693)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~ 249 (693)
+++.. ..++.|. ....|.|++|||+ ..+||+++..|+|.||.++...
T Consensus 213 ~g~~l--------------~E~RRG~---------d~A~iy~iaFSp~-~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 213 DGTLL--------------QELRRGV---------DRADIYCIAFSPN-SSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred CCcEe--------------eeeecCC---------chheEEEEEeCCC-ccEEEEEcCCCeEEEEEeecCC
Confidence 88633 3333332 3467999999997 7899999999999999998654
No 237
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.16 E-value=9.1e-09 Score=109.77 Aligned_cols=217 Identities=12% Similarity=0.157 Sum_probs=129.9
Q ss_pred CcEEEEEECCCCCEEEEEeC-CCcEEEEECCCCc----EEEEeccCCCcceEEEEEeeCCCCCEE-EEEeCCCcEEEEEc
Q 005502 51 GCVNAISWNSKGSLLISGSD-DTHINVWSYSSRK----LLHSIETGHSANVFCTKFVPETSDELV-VSGAGDAEVRLFNL 124 (693)
Q Consensus 51 ~~V~~l~~s~~g~~LaSgs~-Dg~I~IWd~~~~~----~~~~l~~~h~~~I~sl~f~p~~~~~~l-~sgs~Dg~V~vwdl 124 (693)
+....+.|+|+|++|++++. ++.|.+|++.+.. .+..+ .+.....+++|+|+ ++++ ++...++.|.+||+
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~--~~~~~~~~~~~~p~--g~~l~v~~~~~~~v~v~d~ 155 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII--EGLEGCHSANIDPD--NRTLWVPCLKEDRIRLFTL 155 (330)
T ss_pred CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec--cCCCcccEeEeCCC--CCEEEEeeCCCCEEEEEEE
Confidence 45678999999998888764 7899999997432 22222 23344677899998 4555 56666799999999
Q ss_pred CCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeC-CCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCC
Q 005502 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 203 (693)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~-Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (693)
... +... ..... ..... .......++|+| ++.+++++.+ ++.|.+||+...... ...+..+..
T Consensus 156 ~~~-g~l~-~~~~~-~~~~~-~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~----------~~~~~~~~~- 219 (330)
T PRK11028 156 SDD-GHLV-AQEPA-EVTTV-EGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGE----------IECVQTLDM- 219 (330)
T ss_pred CCC-Cccc-ccCCC-ceecC-CCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCC----------EEEEEEEec-
Confidence 752 2110 00000 00111 123467899999 4555555554 899999999743100 001111100
Q ss_pred ceeeecCCCCCccceEEEEEcCCCCcEEEEEe-CCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccce
Q 005502 204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL 282 (693)
Q Consensus 204 ~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs-~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V 282 (693)
+.....+......+.++|+ +++|+++. .++.|.+|++........+ +... . .....
T Consensus 220 ----~p~~~~~~~~~~~i~~~pd-g~~lyv~~~~~~~I~v~~i~~~~~~~~~---------~~~~-----~----~~~~p 276 (330)
T PRK11028 220 ----MPADFSDTRWAADIHITPD-GRHLYACDRTASLISVFSVSEDGSVLSF---------EGHQ-----P----TETQP 276 (330)
T ss_pred ----CCCcCCCCccceeEEECCC-CCEEEEecCCCCeEEEEEEeCCCCeEEE---------eEEE-----e----ccccC
Confidence 0000011123346889997 56777764 5789999998643211000 0000 0 00124
Q ss_pred EEEEEcCCCCEEEEEec-CCcEEEEECCC
Q 005502 283 THVTFSPNGEEVLLSYS-GEHVYLMDVNH 310 (693)
Q Consensus 283 ~~v~fspdg~~L~sgs~-Dg~V~lwDl~~ 310 (693)
..+.|+|+|++|+++.. +++|.+|+++.
T Consensus 277 ~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 277 RGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred CceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 56899999999998876 89999998864
No 238
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.14 E-value=3.1e-09 Score=104.53 Aligned_cols=209 Identities=13% Similarity=0.207 Sum_probs=148.4
Q ss_pred CCCcEEEEEECC---CCC-EEEEEeCCCcEEEEECCCCcEEEEec--cCCC---cceEEEEEeeCCCCCEEEEEeCCCcE
Q 005502 49 HQGCVNAISWNS---KGS-LLISGSDDTHINVWSYSSRKLLHSIE--TGHS---ANVFCTKFVPETSDELVVSGAGDAEV 119 (693)
Q Consensus 49 H~~~V~~l~~s~---~g~-~LaSgs~Dg~I~IWd~~~~~~~~~l~--~~h~---~~I~sl~f~p~~~~~~l~sgs~Dg~V 119 (693)
-+..++.+.|.. +|. .|+-+-.+|.|.++..........+. ..-. ....++.|.+. +..++++-.+|.+
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~--~~~i~vs~s~G~~ 145 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTS--GTKIFVSDSRGSI 145 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeecc--CceEEEEcCCCcE
Confidence 456688888875 455 66777888999999876544333331 1111 12457788887 5778888889999
Q ss_pred EEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEe
Q 005502 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (693)
Q Consensus 120 ~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~ 199 (693)
.+-+..... .+.++.++.|.....-.+|+-.+++++.+||.|+.+..||+|.+... +|
T Consensus 146 ~~v~~t~~~--------le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~-------------i~- 203 (339)
T KOG0280|consen 146 SGVYETEMV--------LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTF-------------IW- 203 (339)
T ss_pred EEEecceee--------eeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcce-------------ee-
Confidence 966665321 25567899999999999999889999999999999999999954421 22
Q ss_pred ccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecC-CCCCCcccccCCCCCCcccccccCccccCCCC
Q 005502 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR-MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (693)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 278 (693)
.....|...|.+|.-+|..+.+++||+.|-.|++||.| +++|+..- .-
T Consensus 204 ---------~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~----------------------~v 252 (339)
T KOG0280|consen 204 ---------HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA----------------------KV 252 (339)
T ss_pred ---------ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC----------------------cc
Confidence 22335778899999999889999999999999999999 45444321 11
Q ss_pred ccceEEEEEcCCCC-EEEEEecCCcEEEEECCCCC
Q 005502 279 SLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 279 ~~~V~~v~fspdg~-~L~sgs~Dg~V~lwDl~~~~ 312 (693)
...|+.+.++|.-. .|++++.-+-.+|-++....
T Consensus 253 ~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~ 287 (339)
T KOG0280|consen 253 GGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKV 287 (339)
T ss_pred ccceEEEEecchhhhHHHHHHHhcCceEEEecccc
Confidence 23699999999643 23344444445666666543
No 239
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.12 E-value=2.5e-09 Score=104.60 Aligned_cols=149 Identities=13% Similarity=0.200 Sum_probs=102.3
Q ss_pred EEEEECCCCCEEEEEeC----------CCcEEEEECCC-CcEEEEeccCCCcceEEEEEeeCCCCCEEEE--EeCCCcEE
Q 005502 54 NAISWNSKGSLLISGSD----------DTHINVWSYSS-RKLLHSIETGHSANVFCTKFVPETSDELVVS--GAGDAEVR 120 (693)
Q Consensus 54 ~~l~~s~~g~~LaSgs~----------Dg~I~IWd~~~-~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~s--gs~Dg~V~ 120 (693)
..+.|+++|++|+.-.. -+...||.+.. ...+..+.....++|.+++|+|+ ++.|++ |..+..|.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~--g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPN--GNEFAVIYGSMPAKVT 86 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcC--CCEEEEEEccCCcccE
Confidence 36889999987765433 12355565532 23444453445667999999999 465543 45678999
Q ss_pred EEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeC---CCcEEEEeCCCCCCCCCCCCCCcccceEE
Q 005502 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE---DGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (693)
Q Consensus 121 vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~---Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l 197 (693)
+||++. +++..+ +...+..|.|+| .+++|++++. .|.|.+||+++.+..
T Consensus 87 lyd~~~-----------~~i~~~--~~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~~~i-------------- 138 (194)
T PF08662_consen 87 LYDVKG-----------KKIFSF--GTQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKKKKI-------------- 138 (194)
T ss_pred EEcCcc-----------cEeEee--cCCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCCEEe--------------
Confidence 999972 445555 356788999999 6677777764 467999999865422
Q ss_pred EeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeC------CCcEEEEecC
Q 005502 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS------DAFARLYDRR 246 (693)
Q Consensus 198 ~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~------Dg~I~lwD~r 246 (693)
. . .....++.++|+|+ |++|+++.. |..++||+..
T Consensus 139 ~-----------~--~~~~~~t~~~WsPd-Gr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 139 S-----------T--FEHSDATDVEWSPD-GRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred e-----------c--cccCcEEEEEEcCC-CCEEEEEEeccceeccccEEEEEec
Confidence 0 0 01224689999998 688887764 7889999985
No 240
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.11 E-value=2.4e-10 Score=132.41 Aligned_cols=105 Identities=19% Similarity=0.089 Sum_probs=95.2
Q ss_pred chhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCC
Q 005502 361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS 440 (693)
Q Consensus 361 ~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~ 440 (693)
..+..++..||.+|+.|+ |..||..|+++|...|. +.+|.|+|.||+++ |++..|+.+|.+||+++|++
T Consensus 125 ~~a~~~k~~G~~~~~~~~-~~~Ai~~y~~al~~~p~-------~~~~~n~a~~~~~l---~~~~~Ai~~~~~al~l~p~~ 193 (615)
T TIGR00990 125 KYAAKLKEKGNKAYRNKD-FNKAIKLYSKAIECKPD-------PVYYSNRAACHNAL---GDWEKVVEDTTAALELDPDY 193 (615)
T ss_pred HHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCc-------hHHHHHHHHHHHHh---CCHHHHHHHHHHHHHcCCCC
Confidence 356789999999999999 99999999999998864 36899999999996 45999999999999999999
Q ss_pred cchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCch
Q 005502 441 FRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (693)
Q Consensus 441 ~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~ 476 (693)
.||++|+|.++..+|++++|+.++..+..+++.+..
T Consensus 194 ~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~ 229 (615)
T TIGR00990 194 SKALNRRANAYDGLGKYADALLDLTASCIIDGFRNE 229 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccH
Confidence 999999999999999999999999988877765543
No 241
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.11 E-value=1.8e-10 Score=121.11 Aligned_cols=104 Identities=18% Similarity=0.358 Sum_probs=88.8
Q ss_pred cceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 005502 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (693)
Q Consensus 41 ~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~ 120 (693)
.++....--.++|+.++|+|||++||+.|.||.++|+|+.+.+++..+ ...-+...||+|+|+ |++|++|+.|--|.
T Consensus 281 NPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~m-kSYFGGLLCvcWSPD--GKyIvtGGEDDLVt 357 (636)
T KOG2394|consen 281 NPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVM-KSYFGGLLCVCWSPD--GKYIVTGGEDDLVT 357 (636)
T ss_pred CccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHH-HhhccceEEEEEcCC--ccEEEecCCcceEE
Confidence 344444444679999999999999999999999999999998887776 456678999999999 79999999999999
Q ss_pred EEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEec
Q 005502 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV 157 (693)
Q Consensus 121 vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 157 (693)
||.+... +.+..-++|.+-|..++|.|
T Consensus 358 VwSf~er----------RVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 358 VWSFEER----------RVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEEeccc----------eEEEeccccccceeeEeecc
Confidence 9999864 44667788999999999973
No 242
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.10 E-value=1.1e-09 Score=101.83 Aligned_cols=104 Identities=13% Similarity=-0.007 Sum_probs=95.5
Q ss_pred HHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhh
Q 005502 366 LVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHL 445 (693)
Q Consensus 366 lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~KA~~ 445 (693)
+...|...+..|+ |.+|+..|.+++...|.. ...|.++|.++.+.+ ++.+|+..+.+|++++|+++.+++
T Consensus 27 ~~~~g~~~~~~g~-~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~g---~~~~A~~~y~~Al~l~p~~~~a~~ 96 (144)
T PRK15359 27 VYASGYASWQEGD-YSRAVIDFSWLVMAQPWS------WRAHIALAGTWMMLK---EYTTAINFYGHALMLDASHPEPVY 96 (144)
T ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHHh---hHHHHHHHHHHHHhcCCCCcHHHH
Confidence 3446788899999 999999999999999887 789999999999964 499999999999999999999999
Q ss_pred hHHHHHHHhccHHHHHHHHHHHcccCCCCchhHH
Q 005502 446 YMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAE 479 (693)
Q Consensus 446 r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~ 479 (693)
++|.|+..+|++++|.+.|++++++.|.+.....
T Consensus 97 ~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~ 130 (144)
T PRK15359 97 QTGVCLKMMGEPGLAREAFQTAIKMSYADASWSE 130 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 9999999999999999999999999999976653
No 243
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=3.6e-09 Score=117.01 Aligned_cols=202 Identities=12% Similarity=0.134 Sum_probs=124.0
Q ss_pred CCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCC---CcEEEEEcCCCCCCCCCCCCCCCceeeccCC
Q 005502 71 DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQCHT 147 (693)
Q Consensus 71 Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~D---g~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~ 147 (693)
+..|.|||..... ...+ ..|...+.+.+|+|+ ++.|+.++.+ ..|++||+..+.. ..+..+.+|
T Consensus 183 ~~~i~i~d~dg~~-~~~l-t~~~~~v~~p~wSPD--G~~la~~s~~~~~~~i~i~dl~tg~~--------~~l~~~~g~- 249 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIV-NRSSQPLMSPAWSPD--GSKLAYVSFENKKSQLVVHDLRSGAR--------KVVASFRGH- 249 (429)
T ss_pred eEEEEEECCCCCC-ceEe-ccCCCccccceEcCC--CCEEEEEEecCCCcEEEEEeCCCCce--------EEEecCCCc-
Confidence 4689999986554 4455 577888999999999 6788777643 3699999975421 122223333
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCcEEEE--eCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcC
Q 005502 148 RRVKKLAVEVGNPHVVWSASEDGTLRQH--DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS 225 (693)
Q Consensus 148 ~~V~~l~~sp~~~~~l~Sgs~Dg~V~iw--Dlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp 225 (693)
...++|+|++..++++.+.+|.+.+| |+.++.. ..+. .+...+....|+|
T Consensus 250 --~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-----------------------~~lt---~~~~~~~~~~wSp 301 (429)
T PRK01742 250 --NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-----------------------SQLT---SGAGNNTEPSWSP 301 (429)
T ss_pred --cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-----------------------Eeec---cCCCCcCCEEECC
Confidence 34689999554444445678877666 4433220 0111 1223466789999
Q ss_pred CCCcEEE-EEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEE
Q 005502 226 TRPHLLL-VGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVY 304 (693)
Q Consensus 226 ~~~~~La-tgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~ 304 (693)
+ +..|+ ++..++.+.||++...... .... .+.. ..+.|+|+|++|+..+.+ .+.
T Consensus 302 D-G~~i~f~s~~~g~~~I~~~~~~~~~------------~~~l--------~~~~---~~~~~SpDG~~ia~~~~~-~i~ 356 (429)
T PRK01742 302 D-GQSILFTSDRSGSPQVYRMSASGGG------------ASLV--------GGRG---YSAQISADGKTLVMINGD-NVV 356 (429)
T ss_pred C-CCEEEEEECCCCCceEEEEECCCCC------------eEEe--------cCCC---CCccCCCCCCEEEEEcCC-CEE
Confidence 8 45554 5556788899987642110 0000 0111 246799999999888775 466
Q ss_pred EEECCCCCcceEEeecCCCceeEEeccCCCcccccC
Q 005502 305 LMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQP 340 (693)
Q Consensus 305 lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~ 340 (693)
+||+.++...... . ........|+|+...+.+..
T Consensus 357 ~~Dl~~g~~~~lt-~-~~~~~~~~~sPdG~~i~~~s 390 (429)
T PRK01742 357 KQDLTSGSTEVLS-S-TFLDESPSISPNGIMIIYSS 390 (429)
T ss_pred EEECCCCCeEEec-C-CCCCCCceECCCCCEEEEEE
Confidence 7999886543222 1 12234566888776665544
No 244
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.08 E-value=2.6e-09 Score=105.08 Aligned_cols=206 Identities=15% Similarity=0.047 Sum_probs=141.4
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEE--EeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCC
Q 005502 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH--SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 130 (693)
Q Consensus 53 V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~--~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~ 130 (693)
-.++.|++.+..++++-.+|.+.+-+...+.... .. .+|.-+++-.+|+-.. .+++.+|+.|+.+..||++.+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~w-k~He~E~Wta~f~~~~-pnlvytGgDD~~l~~~D~R~p~-- 199 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTW-KVHEFEAWTAKFSDKE-PNLVYTGGDDGSLSCWDIRIPK-- 199 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccc-cccceeeeeeecccCC-CceEEecCCCceEEEEEecCCc--
Confidence 4578899999999999999999966654443333 45 7899999999999875 6899999999999999999542
Q ss_pred CCCCCCCCCce-eeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeec
Q 005502 131 GLDDNAITPSA-LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA 209 (693)
Q Consensus 131 ~~~~~~~~~~~-~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~ 209 (693)
+.+. ..+-|...|.+|.-+|..+.+|+||+.|-.|++||+|+...+ +.
T Consensus 200 -------~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP------------------------l~ 248 (339)
T KOG0280|consen 200 -------TFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP------------------------LF 248 (339)
T ss_pred -------ceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc------------------------cc
Confidence 2222 245689999999999989999999999999999999965422 00
Q ss_pred CCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcC
Q 005502 210 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP 289 (693)
Q Consensus 210 ~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fsp 289 (693)
.. .-...|..+.++|.....+++++.-.-++|-+....... + ...+.....|.+ -+..-.|..
T Consensus 249 ~~-~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e--~-------------~~~~~s~~~hdS-l~YG~DWd~ 311 (339)
T KOG0280|consen 249 KA-KVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLE--F-------------QIVLPSDKIHDS-LCYGGDWDS 311 (339)
T ss_pred cC-ccccceEEEEecchhhhHHHHHHHhcCceEEEecccccc--h-------------heeeeccccccc-eeecccccc
Confidence 00 112578889999875555666666666777777654321 1 000111122332 244445555
Q ss_pred CCCEEEEEec-CCcEE-EEECCC
Q 005502 290 NGEEVLLSYS-GEHVY-LMDVNH 310 (693)
Q Consensus 290 dg~~L~sgs~-Dg~V~-lwDl~~ 310 (693)
...+|++++. |..++ +|-.-+
T Consensus 312 ~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 312 KDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred ccceeeeeeccccceeeeeeecc
Confidence 5566777664 66655 665444
No 245
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.04 E-value=2.6e-08 Score=109.83 Aligned_cols=204 Identities=14% Similarity=0.125 Sum_probs=126.9
Q ss_pred ceEEeccCCCcEEEEEECCCCCEEEEEeCC---CcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEE-EEEeCCC
Q 005502 42 QERELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGDA 117 (693)
Q Consensus 42 ~~~~l~gH~~~V~~l~~s~~g~~LaSgs~D---g~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l-~sgs~Dg 117 (693)
..+.+..+...+.+..|+|+|++|+.++.+ ..|.+||+.+++.... ..+.+.+.+++|+|+ ++.| ++.+.++
T Consensus 181 ~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~--~~~~~~~~~~~~spD--g~~l~~~~~~~~ 256 (417)
T TIGR02800 181 NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV--ASFPGMNGAPAFSPD--GSKLAVSLSKDG 256 (417)
T ss_pred CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe--ecCCCCccceEECCC--CCEEEEEECCCC
Confidence 345566677789999999999999987654 4799999988765432 245566778999998 4555 4555554
Q ss_pred --cEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEeCCCCCCCCCCCCCCccc
Q 005502 118 --EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQEC 193 (693)
Q Consensus 118 --~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg--~V~iwDlr~~~~~~~~~~~~~~~ 193 (693)
.|++|++.... ...+..+........|+|++..++++...++ .|.++|+.++..
T Consensus 257 ~~~i~~~d~~~~~-----------~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~----------- 314 (417)
T TIGR02800 257 NPDIYVMDLDGKQ-----------LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV----------- 314 (417)
T ss_pred CccEEEEECCCCC-----------EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-----------
Confidence 58888887531 2233334444556789995544444444444 466666654321
Q ss_pred ceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCC---cEEEEecCCCCCCcccccCCCCCCcccccccC
Q 005502 194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA---FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM 270 (693)
Q Consensus 194 ~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg---~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~ 270 (693)
..+.. +...+....|+|+ +.+|+.++.++ .|.+||+.+.... .+
T Consensus 315 ------------~~l~~---~~~~~~~~~~spd-g~~i~~~~~~~~~~~i~~~d~~~~~~~--------------~l--- 361 (417)
T TIGR02800 315 ------------RRLTF---RGGYNASPSWSPD-GDLIAFVHREGGGFNIAVMDLDGGGER--------------VL--- 361 (417)
T ss_pred ------------EEeec---CCCCccCeEECCC-CCEEEEEEccCCceEEEEEeCCCCCeE--------------Ec---
Confidence 01110 1123456789997 57777777765 7888888753210 00
Q ss_pred ccccCCCCccceEEEEEcCCCCEEEEEecCC---cEEEEECCC
Q 005502 271 HLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE---HVYLMDVNH 310 (693)
Q Consensus 271 ~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg---~V~lwDl~~ 310 (693)
.... ......|+|+|++|+..+.++ .+++++...
T Consensus 362 --~~~~----~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g 398 (417)
T TIGR02800 362 --TDTG----LDESPSFAPNGRMILYATTRGGRGVLGLVSTDG 398 (417)
T ss_pred --cCCC----CCCCceECCCCCEEEEEEeCCCcEEEEEEECCC
Confidence 0000 123468999999998877743 456666443
No 246
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.02 E-value=8.4e-09 Score=105.19 Aligned_cols=165 Identities=15% Similarity=0.247 Sum_probs=127.3
Q ss_pred cEEEEEECC-CCCEEEEEeCC--CcEEEEECCCCcEEEEecc--------CCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 005502 52 CVNAISWNS-KGSLLISGSDD--THINVWSYSSRKLLHSIET--------GHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (693)
Q Consensus 52 ~V~~l~~s~-~g~~LaSgs~D--g~I~IWd~~~~~~~~~l~~--------~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~ 120 (693)
.+..+.-++ +..++|+|+.. ..+.|||++..+.+..-.. .-.-.++++.|.|......|||+..-+.||
T Consensus 150 g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR 229 (412)
T KOG3881|consen 150 GLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVR 229 (412)
T ss_pred ceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEE
Confidence 344444444 34577789988 7899999987755433211 122356789999885558999999999999
Q ss_pred EEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEec
Q 005502 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (693)
Q Consensus 121 vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~ 200 (693)
+||.+... +|+..+.--..+|+++...| ++++|.+|..-|.+..||+|.+...
T Consensus 230 ~YDt~~qR---------RPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl~----------------- 282 (412)
T KOG3881|consen 230 LYDTRHQR---------RPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKLL----------------- 282 (412)
T ss_pred EecCcccC---------cceeEeccccCcceeeeecC-CCcEEEEecccchhheecccCceee-----------------
Confidence 99999542 67888887889999999999 7789999999999999999987532
Q ss_pred cCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCC
Q 005502 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL 251 (693)
Q Consensus 201 ~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~ 251 (693)
.....+....|++|..+|. ..++++++-|.+|||||+.+.+++
T Consensus 283 -------g~~~kg~tGsirsih~hp~-~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 283 -------GCGLKGITGSIRSIHCHPT-HPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred -------ccccCCccCCcceEEEcCC-CceEEeeccceeEEEeecccchhh
Confidence 1112244568899999997 579999999999999999985544
No 247
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.01 E-value=8.6e-09 Score=100.84 Aligned_cols=112 Identities=10% Similarity=0.259 Sum_probs=85.4
Q ss_pred CCCcEEEEEECCCCCEEEEE--eCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCC---CcEEEEE
Q 005502 49 HQGCVNAISWNSKGSLLISG--SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFN 123 (693)
Q Consensus 49 H~~~V~~l~~s~~g~~LaSg--s~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~D---g~V~vwd 123 (693)
+.++|.+++|+|+|+.||+. ..++.|.|||+. ++.+..+ +...+..|.|+|+ |++|++|+.+ |.|.+||
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~---~~~~~n~i~wsP~--G~~l~~~g~~n~~G~l~~wd 131 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSF---GTQPRNTISWSPD--GRFLVLAGFGNLNGDLEFWD 131 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEee---cCCCceEEEECCC--CCEEEEEEccCCCcEEEEEE
Confidence 45679999999999987654 467899999996 6777777 3456789999999 7899988754 5699999
Q ss_pred cCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeC------CCcEEEEeCCC
Q 005502 124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE------DGTLRQHDFRQ 179 (693)
Q Consensus 124 l~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~------Dg~V~iwDlr~ 179 (693)
++.. +.+.... ...++.++|+| ++.+|++++. |..++||+...
T Consensus 132 ~~~~----------~~i~~~~--~~~~t~~~WsP-dGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 132 VRKK----------KKISTFE--HSDATDVEWSP-DGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred CCCC----------EEeeccc--cCcEEEEEEcC-CCCEEEEEEeccceeccccEEEEEecC
Confidence 9953 3344433 34578999999 5566666653 78899999853
No 248
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.01 E-value=1.5e-08 Score=114.71 Aligned_cols=194 Identities=10% Similarity=0.127 Sum_probs=146.9
Q ss_pred EECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEE---EEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCC
Q 005502 57 SWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT---KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD 133 (693)
Q Consensus 57 ~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl---~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~ 133 (693)
.+......++.+..+..+.|||...+.....+...-.....++ -++++ .-++++|+.-+.|.+|+.....
T Consensus 94 ~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~--~~~i~~gsv~~~iivW~~~~dn----- 166 (967)
T KOG0974|consen 94 KLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAE--ELYIASGSVFGEIIVWKPHEDN----- 166 (967)
T ss_pred chhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCc--EEEEEeccccccEEEEeccccC-----
Confidence 3334567888888899999999988777666632222222222 22333 3588999999999999998432
Q ss_pred CCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCC
Q 005502 134 DNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPK 213 (693)
Q Consensus 134 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 213 (693)
.+. .+.+|.+.|.++.++- ++.+++|.|+|.++|+|++.+.+... ...-+
T Consensus 167 ----~p~-~l~GHeG~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~~~~------------------------~~~fg 216 (967)
T KOG0974|consen 167 ----KPI-RLKGHEGSIFSIVTSL-DGRYIASVSDDRSIRLWPIDSREVLG------------------------CTGFG 216 (967)
T ss_pred ----Ccc-eecccCCceEEEEEcc-CCcEEEEEecCcceeeeecccccccC------------------------ccccc
Confidence 222 5789999999999998 77999999999999999999876432 11225
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCE
Q 005502 214 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEE 293 (693)
Q Consensus 214 ~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~ 293 (693)
|...+..+.|+|. .++|++.|.+.++|+..-. .+..+ .+|....|..++.+++...
T Consensus 217 HsaRvw~~~~~~n---~i~t~gedctcrvW~~~~~--------------~l~~y-------~~h~g~~iw~~~~~~~~~~ 272 (967)
T KOG0974|consen 217 HSARVWACCFLPN---RIITVGEDCTCRVWGVNGT--------------QLEVY-------DEHSGKGIWKIAVPIGVII 272 (967)
T ss_pred ccceeEEEEeccc---eeEEeccceEEEEEecccc--------------eehhh-------hhhhhcceeEEEEcCCceE
Confidence 7788999999995 8999999999999965532 12222 3455557999999999999
Q ss_pred EEEEecCCcEEEEECCCC
Q 005502 294 VLLSYSGEHVYLMDVNHA 311 (693)
Q Consensus 294 L~sgs~Dg~V~lwDl~~~ 311 (693)
++|++.|+.+++||+...
T Consensus 273 ~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 273 KVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred EEeeccCcchhhhhhhcc
Confidence 999999999999999874
No 249
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.00 E-value=1.8e-09 Score=126.91 Aligned_cols=194 Identities=15% Similarity=0.212 Sum_probs=157.2
Q ss_pred eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcC
Q 005502 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (693)
Q Consensus 46 l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~ 125 (693)
++.|-..|.++.-+|.-.+.+||+.||.|++|....++.+.++.+.-...|+.+.|+.. |+.+..+..||.+.+|.+.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~q--Gnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQ--GNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhccc--CCceeeeccCCceeecccC
Confidence 34456789999999998999999999999999999999888887766699999999988 7899999999999999998
Q ss_pred CCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEe---CCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccC
Q 005502 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS---EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (693)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs---~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~ 202 (693)
. ++....++|.....++.|-. .++++++ .++.+.+||.--....
T Consensus 2282 p-----------k~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~------------------- 2328 (2439)
T KOG1064|consen 2282 P-----------KPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMN------------------- 2328 (2439)
T ss_pred C-----------cceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCccc-------------------
Confidence 3 67889999999999999964 5777775 4689999997543211
Q ss_pred CceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccce
Q 005502 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL 282 (693)
Q Consensus 203 ~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V 282 (693)
.+. +..|...++++++-|. .++|++|+.+|.|.+||++..+....++ .
T Consensus 2329 ----s~v-~~~H~~gaT~l~~~P~-~qllisggr~G~v~l~D~rqrql~h~~~--------------------------~ 2376 (2439)
T KOG1064|consen 2329 ----SLV-HTCHDGGATVLAYAPK-HQLLISGGRKGEVCLFDIRQRQLRHTFQ--------------------------A 2376 (2439)
T ss_pred ----cee-eeecCCCceEEEEcCc-ceEEEecCCcCcEEEeehHHHHHHHHhh--------------------------h
Confidence 000 1357778999999996 6899999999999999999654332221 1
Q ss_pred EEEEEcCCCCEEEEEecCCcEEEEECCCC
Q 005502 283 THVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (693)
Q Consensus 283 ~~v~fspdg~~L~sgs~Dg~V~lwDl~~~ 311 (693)
++ ...++++|+..|.|+||++...
T Consensus 2377 ----~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2377 ----LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred ----hh-hhheeeccCcccceEEEEcccc
Confidence 33 5568899999999999999984
No 250
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.99 E-value=1.2e-08 Score=108.50 Aligned_cols=201 Identities=15% Similarity=0.226 Sum_probs=142.7
Q ss_pred EEEECC-CCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCC
Q 005502 55 AISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD 133 (693)
Q Consensus 55 ~l~~s~-~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~ 133 (693)
.|+++. +..+++.|+. ..|.=++++.|..+..+ ....+.+++|..++. ..+|++|+.+|.|-.||.+..+....
T Consensus 138 Dm~y~~~scDly~~gsg-~evYRlNLEqGrfL~P~-~~~~~~lN~v~in~~--hgLla~Gt~~g~VEfwDpR~ksrv~~- 212 (703)
T KOG2321|consen 138 DMKYHKPSCDLYLVGSG-SEVYRLNLEQGRFLNPF-ETDSGELNVVSINEE--HGLLACGTEDGVVEFWDPRDKSRVGT- 212 (703)
T ss_pred cccccCCCccEEEeecC-cceEEEEcccccccccc-ccccccceeeeecCc--cceEEecccCceEEEecchhhhhhee-
Confidence 444543 3344444444 46888899999999888 456688999999998 47999999999999999986432110
Q ss_pred CCCCCCceeeccCC-----CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeee
Q 005502 134 DNAITPSALYQCHT-----RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 208 (693)
Q Consensus 134 ~~~~~~~~~~~~h~-----~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 208 (693)
.........|. ..|+++.|.. ++-.+++|+.+|.|.|||+|+.++. +
T Consensus 213 ---l~~~~~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl------------------------~ 264 (703)
T KOG2321|consen 213 ---LDAASSVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPL------------------------L 264 (703)
T ss_pred ---eecccccCCCccccccCcceEEEecC-CceeEEeeccCCcEEEEEcccCCce------------------------e
Confidence 01111222233 3499999986 5788999999999999999998743 1
Q ss_pred cCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEc
Q 005502 209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS 288 (693)
Q Consensus 209 ~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fs 288 (693)
..-.....+|..+.|.+.+..--++......++|||-.++++...+. ....++.+++-
T Consensus 265 ~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE----------------------pt~~lND~C~~ 322 (703)
T KOG2321|consen 265 VKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIE----------------------PTSDLNDFCFV 322 (703)
T ss_pred ecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeecc----------------------ccCCcCceeee
Confidence 11113356888999988654445555667889999999887654431 11148889999
Q ss_pred CCCCEEEEEecCCcEEEEECCC
Q 005502 289 PNGEEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 289 pdg~~L~sgs~Dg~V~lwDl~~ 310 (693)
|++-+++++-.+..+..|=+..
T Consensus 323 p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 323 PGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred cCCceEEEecCCCcceeEEccc
Confidence 9999999998887777666655
No 251
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.98 E-value=9.8e-09 Score=103.02 Aligned_cols=244 Identities=18% Similarity=0.193 Sum_probs=173.7
Q ss_pred ccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEE-CCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCC
Q 005502 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS-YSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD 116 (693)
Q Consensus 38 ~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd-~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~D 116 (693)
.+..+...++||.+.|+....-|...-+++.+.|.+++||- .+.++.-..+......++.++.+.++. ..|+.|-..
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~--~~L~vg~~n 89 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSES--RRLYVGQDN 89 (404)
T ss_pred cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccc--eEEEEEEec
Confidence 34555667899999999999988888899999999999994 455666666655667889999999984 889999999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCC-------CC---
Q 005502 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP-------PA--- 186 (693)
Q Consensus 117 g~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~-------~~--- 186 (693)
|+|.-+.+... .++....+.+.+|..+|..+-|+- .+.++++.+.|..+.-.-.+.+.... ..
T Consensus 90 gtvtefs~sed------fnkm~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~ 162 (404)
T KOG1409|consen 90 GTVTEFALSED------FNKMTFLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQ 162 (404)
T ss_pred ceEEEEEhhhh------hhhcchhhhhhhhhcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEeeccCCCCc
Confidence 99999987642 222356777889999999999987 66788899998877433334333210 00
Q ss_pred ------CCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCC
Q 005502 187 ------GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP 260 (693)
Q Consensus 187 ------~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~ 260 (693)
..+..........+.......+....+|...+++++|.|. ..+|.+|..|..|.+||+--.+-.
T Consensus 163 ~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~-~~~LfSg~~d~~vi~wdigg~~g~--------- 232 (404)
T KOG1409|consen 163 FDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPG-QRLLFSGASDHSVIMWDIGGRKGT--------- 232 (404)
T ss_pred eeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCC-CcEEEeccccCceEEEeccCCcce---------
Confidence 0000111112222222333345556678889999999996 689999999999999998743211
Q ss_pred CCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCC
Q 005502 261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (693)
Q Consensus 261 ~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~ 311 (693)
.+.. .+|.+ .|..+..-+--+.|++++.||.|-+||++..
T Consensus 233 -~~el---------~gh~~-kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 233 -AYEL---------QGHND-KVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred -eeee---------ccchh-hhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 0111 22333 3666777777788999999999999999984
No 252
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.98 E-value=7.3e-08 Score=106.88 Aligned_cols=203 Identities=15% Similarity=0.138 Sum_probs=127.9
Q ss_pred CcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeC---CCcEEEEEcCCCCCCCCCCCCCCCceeeccCCC
Q 005502 72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR 148 (693)
Q Consensus 72 g~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~---Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~ 148 (693)
..|.+||.... ....+ ..|...+.+.+|+|+ |+.|+..+. +..|.+||+..+. ...+..+..
T Consensus 182 ~~l~~~d~dg~-~~~~l-t~~~~~v~~p~wSpD--G~~lay~s~~~g~~~i~~~dl~~g~-----------~~~l~~~~g 246 (435)
T PRK05137 182 KRLAIMDQDGA-NVRYL-TDGSSLVLTPRFSPN--RQEITYMSYANGRPRVYLLDLETGQ-----------RELVGNFPG 246 (435)
T ss_pred eEEEEECCCCC-CcEEE-ecCCCCeEeeEECCC--CCEEEEEEecCCCCEEEEEECCCCc-----------EEEeecCCC
Confidence 36888998544 44445 567889999999999 677776653 4689999997542 223344566
Q ss_pred CeEEEEEecCCCcEEEEEeCCCc--EEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCC
Q 005502 149 RVKKLAVEVGNPHVVWSASEDGT--LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST 226 (693)
Q Consensus 149 ~V~~l~~sp~~~~~l~Sgs~Dg~--V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~ 226 (693)
.+...+|+|++..++++.+.+|. |.+||+.++... .+. .+........|+|+
T Consensus 247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-----------------------~Lt---~~~~~~~~~~~spD 300 (435)
T PRK05137 247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-----------------------RLT---DSPAIDTSPSYSPD 300 (435)
T ss_pred cccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE-----------------------Ecc---CCCCccCceeEcCC
Confidence 77888999966566667777766 666677654311 111 11123456789998
Q ss_pred CCcEEEEEe-CCC--cEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecC---
Q 005502 227 RPHLLLVGG-SDA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG--- 300 (693)
Q Consensus 227 ~~~~Latgs-~Dg--~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~D--- 300 (693)
++.|+..+ .+| .|++||+...... .+.. . ...+....|+|+|++|+....+
T Consensus 301 -G~~i~f~s~~~g~~~Iy~~d~~g~~~~--------------~lt~-------~-~~~~~~~~~SpdG~~ia~~~~~~~~ 357 (435)
T PRK05137 301 -GSQIVFESDRSGSPQLYVMNADGSNPR--------------RISF-------G-GGRYSTPVWSPRGDLIAFTKQGGGQ 357 (435)
T ss_pred -CCEEEEEECCCCCCeEEEEECCCCCeE--------------Eeec-------C-CCcccCeEECCCCCEEEEEEcCCCc
Confidence 56666555 333 5777786643211 1100 0 1135568899999999877653
Q ss_pred CcEEEEECCCCCcceEEeecCCCceeEEeccCCCcccccC
Q 005502 301 EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQP 340 (693)
Q Consensus 301 g~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~ 340 (693)
..|++||+.++.. . ............|+|+.+.+.+..
T Consensus 358 ~~i~~~d~~~~~~-~-~lt~~~~~~~p~~spDG~~i~~~~ 395 (435)
T PRK05137 358 FSIGVMKPDGSGE-R-ILTSGFLVEGPTWAPNGRVIMFFR 395 (435)
T ss_pred eEEEEEECCCCce-E-eccCCCCCCCCeECCCCCEEEEEE
Confidence 3789999866432 2 222233455677888877766543
No 253
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.97 E-value=3.1e-08 Score=109.72 Aligned_cols=203 Identities=11% Similarity=0.092 Sum_probs=124.4
Q ss_pred CcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeC---CCcEEEEEcCCCCCCCCCCCCCCCceeeccCCC
Q 005502 72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR 148 (693)
Q Consensus 72 g~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~---Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~ 148 (693)
..|.|||.... ....+ ..+...+.+.+|+|+ ++.|+..+. ...|.+||+..+. ...+..+..
T Consensus 184 ~~l~i~D~~g~-~~~~l-t~~~~~v~~p~wSpD--g~~la~~s~~~~~~~l~~~dl~~g~-----------~~~l~~~~g 248 (433)
T PRK04922 184 YALQVADSDGY-NPQTI-LRSAEPILSPAWSPD--GKKLAYVSFERGRSAIYVQDLATGQ-----------RELVASFRG 248 (433)
T ss_pred EEEEEECCCCC-CceEe-ecCCCccccccCCCC--CCEEEEEecCCCCcEEEEEECCCCC-----------EEEeccCCC
Confidence 35899998644 44445 467778999999999 677777764 3469999997542 122222344
Q ss_pred CeEEEEEecCCCcEEEEEeCCC--cEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCC
Q 005502 149 RVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST 226 (693)
Q Consensus 149 ~V~~l~~sp~~~~~l~Sgs~Dg--~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~ 226 (693)
....++|+|++..++++.+.+| .|.+||+.++... .+. .+.......+|+|+
T Consensus 249 ~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-----------------------~lt---~~~~~~~~~~~spD 302 (433)
T PRK04922 249 INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-----------------------RLT---NHFGIDTEPTWAPD 302 (433)
T ss_pred CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-----------------------ECc---cCCCCccceEECCC
Confidence 4557899996666666777666 4888888765311 111 11122356789998
Q ss_pred CCcEEEEEe-CCCc--EEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCC--
Q 005502 227 RPHLLLVGG-SDAF--ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE-- 301 (693)
Q Consensus 227 ~~~~Latgs-~Dg~--I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg-- 301 (693)
+..|+.++ .+|. |+++|+..++... + ++ .+. ....++|+|+|++|+..+.++
T Consensus 303 -G~~l~f~sd~~g~~~iy~~dl~~g~~~~-----------l-t~-------~g~---~~~~~~~SpDG~~Ia~~~~~~~~ 359 (433)
T PRK04922 303 -GKSIYFTSDRGGRPQIYRVAASGGSAER-----------L-TF-------QGN---YNARASVSPDGKKIAMVHGSGGQ 359 (433)
T ss_pred -CCEEEEEECCCCCceEEEEECCCCCeEE-----------e-ec-------CCC---CccCEEECCCCCEEEEEECCCCc
Confidence 56666555 4555 5556655432110 0 00 111 234689999999998765533
Q ss_pred -cEEEEECCCCCcceEEeecCCCceeEEeccCCCcccccC
Q 005502 302 -HVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQP 340 (693)
Q Consensus 302 -~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~ 340 (693)
.|++||+.++... ....+.......|+|+...+.+..
T Consensus 360 ~~I~v~d~~~g~~~--~Lt~~~~~~~p~~spdG~~i~~~s 397 (433)
T PRK04922 360 YRIAVMDLSTGSVR--TLTPGSLDESPSFAPNGSMVLYAT 397 (433)
T ss_pred eeEEEEECCCCCeE--ECCCCCCCCCceECCCCCEEEEEE
Confidence 6999999886533 222333344567888877665443
No 254
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.97 E-value=5.4e-09 Score=95.89 Aligned_cols=121 Identities=17% Similarity=0.008 Sum_probs=105.5
Q ss_pred cCcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccC
Q 005502 358 TGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRID 437 (693)
Q Consensus 358 ~~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ld 437 (693)
..+.....+...|..++..|+ |..|+..+.+++...|.. ...+.++|.+|++.+. +.+|+..+.++++++
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGR-YDEALKLFQLLAAYDPYN------SRYWLGLAACCQMLKE---YEEAIDAYALAAALD 81 (135)
T ss_pred CChhhHHHHHHHHHHHHHccc-HHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcC
Confidence 344555667788899999999 999999999999988876 7789999999999654 999999999999999
Q ss_pred CCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHHHHHHH
Q 005502 438 SSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHI 488 (693)
Q Consensus 438 p~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l~~~i 488 (693)
|.+...++.+|.++..+|++++|+..++++++++|++....+..+++.+.+
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 132 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAML 132 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999977665555555443
No 255
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.97 E-value=1e-07 Score=105.55 Aligned_cols=203 Identities=12% Similarity=0.087 Sum_probs=123.8
Q ss_pred eEEeccCCCcEEEEEECCCCCEEEEEeCC---CcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEE-EEeCCC-
Q 005502 43 ERELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV-SGAGDA- 117 (693)
Q Consensus 43 ~~~l~gH~~~V~~l~~s~~g~~LaSgs~D---g~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~-sgs~Dg- 117 (693)
.+.+..|...+....|+|+|+.|+..+.+ ..|.+|++.+++... + ....+.+....|+|+ |+.|+ +...++
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l-~~~~g~~~~~~~SpD--G~~la~~~~~~g~ 266 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-I-TNFEGLNGAPAWSPD--GSKLAFVLSKDGN 266 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-c-cCCCCCcCCeEECCC--CCEEEEEEccCCC
Confidence 45566677889999999999999877644 358999998876543 3 233445667899999 56555 555555
Q ss_pred -cEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCc--EEEEeCCCCCCCCCCCCCCcccc
Q 005502 118 -EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT--LRQHDFRQGSSCPPAGSSHQECR 194 (693)
Q Consensus 118 -~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~--V~iwDlr~~~~~~~~~~~~~~~~ 194 (693)
.|.+||+.... ...+..+........|+|++..++++...+|. |.++|+.+++..
T Consensus 267 ~~Iy~~d~~~~~-----------~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~----------- 324 (430)
T PRK00178 267 PEIYVMDLASRQ-----------LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE----------- 324 (430)
T ss_pred ceEEEEECCCCC-----------eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-----------
Confidence 57777887532 22333344556678899965555555545554 556666544310
Q ss_pred eEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeC-CC--cEEEEecCCCCCCcccccCCCCCCcccccccCc
Q 005502 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-DA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 271 (693)
Q Consensus 195 ~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~-Dg--~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (693)
.+... . .......|+|+ ++.|+..+. ++ .|.+||+.++... .+...
T Consensus 325 ------------~lt~~-~--~~~~~~~~Spd-g~~i~~~~~~~~~~~l~~~dl~tg~~~--------------~lt~~- 373 (430)
T PRK00178 325 ------------RVTFV-G--NYNARPRLSAD-GKTLVMVHRQDGNFHVAAQDLQRGSVR--------------ILTDT- 373 (430)
T ss_pred ------------EeecC-C--CCccceEECCC-CCEEEEEEccCCceEEEEEECCCCCEE--------------EccCC-
Confidence 11000 0 11234679998 556665543 33 4778888764311 01000
Q ss_pred cccCCCCccceEEEEEcCCCCEEEEEecC---CcEEEEECCC
Q 005502 272 LSEHGRSSLHLTHVTFSPNGEEVLLSYSG---EHVYLMDVNH 310 (693)
Q Consensus 272 ~~~~~h~~~~V~~v~fspdg~~L~sgs~D---g~V~lwDl~~ 310 (693)
. ......|+|||++|+..+.+ ..|+++++..
T Consensus 374 -----~---~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 374 -----S---LDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred -----C---CCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 0 11235899999999877653 3578888865
No 256
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.94 E-value=5.5e-09 Score=96.07 Aligned_cols=117 Identities=11% Similarity=-0.113 Sum_probs=101.8
Q ss_pred cccccccccccccC-cchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHH
Q 005502 346 LQTNIRVRGEVATG-LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQ 424 (693)
Q Consensus 346 ~~~~~~~~~~~~~~-~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~ 424 (693)
...|..+....-.. .+..+.+-..|..++..|+ |.+|...|.-+..+.|.+ +..|.|.++|+-.++. +.
T Consensus 17 ~~~Ggsl~~l~~~~~~~~l~~lY~~A~~ly~~G~-l~~A~~~f~~L~~~Dp~~------~~y~~gLG~~~Q~~g~---~~ 86 (157)
T PRK15363 17 FRRGGSLRMLLDDDVTQPLNTLYRYAMQLMEVKE-FAGAARLFQLLTIYDAWS------FDYWFRLGECCQAQKH---WG 86 (157)
T ss_pred HHcCCcHHHHHCCChHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHHhh---HH
Confidence 33344443333344 5677889999999999999 999999999999999888 8899999999998655 99
Q ss_pred HHHHhHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCC
Q 005502 425 MAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDP 472 (693)
Q Consensus 425 ~A~~Dc~~Al~ldp~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p 472 (693)
+||.-..+|+.|+|+++.+++..|.|++.+|+.++|.++|+.++...-
T Consensus 87 ~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 87 EAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999998763
No 257
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.93 E-value=4.1e-09 Score=119.12 Aligned_cols=137 Identities=26% Similarity=0.418 Sum_probs=111.6
Q ss_pred cCcccccchhhhccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCC
Q 005502 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105 (693)
Q Consensus 26 ~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~ 105 (693)
+.+.+=+|+...... +. .+.||.+.|.++.|+.+|.+++|.|+|.++++|++++.+......-+|++.|+.++|.|+
T Consensus 153 v~~~iivW~~~~dn~-p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n- 229 (967)
T KOG0974|consen 153 VFGEIIVWKPHEDNK-PI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN- 229 (967)
T ss_pred ccccEEEEeccccCC-cc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-
Confidence 345555666552222 22 689999999999999999999999999999999999988776333599999999999986
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCC-CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 005502 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHT-RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180 (693)
Q Consensus 106 ~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~ 180 (693)
.++|++.|.+.++|+.+- ..+..+..|. ..+..++..+ +..+.+|++.||.+++||+...
T Consensus 230 ---~i~t~gedctcrvW~~~~-----------~~l~~y~~h~g~~iw~~~~~~-~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 230 ---RIITVGEDCTCRVWGVNG-----------TQLEVYDEHSGKGIWKIAVPI-GVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred ---eeEEeccceEEEEEeccc-----------ceehhhhhhhhcceeEEEEcC-CceEEEeeccCcchhhhhhhcc
Confidence 899999999999997763 2344677776 4789999988 6678889999999999998653
No 258
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.92 E-value=1.5e-07 Score=104.45 Aligned_cols=221 Identities=12% Similarity=0.097 Sum_probs=123.4
Q ss_pred EeccCCCcEEEEEECCCCCEEEEEeCC-C--cEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEE-EEEeCCCc--
Q 005502 45 ELEGHQGCVNAISWNSKGSLLISGSDD-T--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGDAE-- 118 (693)
Q Consensus 45 ~l~gH~~~V~~l~~s~~g~~LaSgs~D-g--~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l-~sgs~Dg~-- 118 (693)
.+..+...+.+..|+|+|+.|+..+.+ + .|.+||+.+++... + ....+......|+|+ ++.| ++...++.
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-l-t~~~g~~~~~~wSPD--G~~La~~~~~~g~~~ 287 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-V-TSFPGINGAPRFSPD--GKKLALVLSKDGQPE 287 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-e-cCCCCCcCCeeECCC--CCEEEEEEeCCCCeE
Confidence 344556678899999999998876543 3 58889998776432 2 222334457899999 4655 45666776
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCc--EEEEeCCCCCCCCCCCCCCcccceE
Q 005502 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT--LRQHDFRQGSSCPPAGSSHQECRNI 196 (693)
Q Consensus 119 V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~--V~iwDlr~~~~~~~~~~~~~~~~~~ 196 (693)
|.+||+.... ...+..+...+...+|+|++..++++...+|. |.++|+.+++.
T Consensus 288 Iy~~dl~tg~-----------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~-------------- 342 (448)
T PRK04792 288 IYVVDIATKA-----------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV-------------- 342 (448)
T ss_pred EEEEECCCCC-----------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE--------------
Confidence 6666766431 23333345556778999965555555555554 44555544321
Q ss_pred EEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEE-eCCCc--EEEEecCCCCCCcccccCCCCCCcccccccCccc
Q 005502 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVG-GSDAF--ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 273 (693)
Q Consensus 197 l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latg-s~Dg~--I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (693)
..+... . ......+|+|++ ++|+.. ..++. |.++|+.++... .....
T Consensus 343 ---------~~Lt~~-g--~~~~~~~~SpDG-~~l~~~~~~~g~~~I~~~dl~~g~~~--------------~lt~~--- 392 (448)
T PRK04792 343 ---------SRLTFE-G--EQNLGGSITPDG-RSMIMVNRTNGKFNIARQDLETGAMQ--------------VLTST--- 392 (448)
T ss_pred ---------EEEecC-C--CCCcCeeECCCC-CEEEEEEecCCceEEEEEECCCCCeE--------------EccCC---
Confidence 111100 0 112346899984 555544 44454 455676654311 00000
Q ss_pred cCCCCccceEEEEEcCCCCEEEEEec-CC--cEEEEECCCCCcceEEeecCCCceeEEecc
Q 005502 274 EHGRSSLHLTHVTFSPNGEEVLLSYS-GE--HVYLMDVNHAGGRAMRYTVGDASKIMSFTP 331 (693)
Q Consensus 274 ~~~h~~~~V~~v~fspdg~~L~sgs~-Dg--~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p 331 (693)
. ......|+|||++|+..+. ++ .++++++.. ................+|+|
T Consensus 393 ---~---~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G-~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 393 ---R---LDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG-RFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred ---C---CCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEECcCCCCCcCCCccCC
Confidence 0 0123479999999887665 33 478888754 32322222223334445554
No 259
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.91 E-value=6.9e-10 Score=112.01 Aligned_cols=106 Identities=25% Similarity=0.167 Sum_probs=98.1
Q ss_pred cCcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccC
Q 005502 358 TGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRID 437 (693)
Q Consensus 358 ~~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ld 437 (693)
.-.+++...+.++.+++..|. +..||+.|+.||.+.|.. +.+|.+||.+|+|++. ..+|++||..||+|+
T Consensus 109 e~~eqa~e~k~~A~eAln~G~-~~~ai~~~t~ai~lnp~~------a~l~~kr~sv~lkl~k---p~~airD~d~A~ein 178 (377)
T KOG1308|consen 109 EMMDQANDKKVQASEALNDGE-FDTAIELFTSAIELNPPL------AILYAKRASVFLKLKK---PNAAIRDCDFAIEIN 178 (377)
T ss_pred HHHHHHHHHHHHHHHHhcCcc-hhhhhcccccccccCCch------hhhcccccceeeeccC---CchhhhhhhhhhccC
Confidence 345667788888999999999 999999999999999887 8999999999999887 889999999999999
Q ss_pred CCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCC
Q 005502 438 SSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPS 473 (693)
Q Consensus 438 p~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~ 473 (693)
|+..|.|--|+.|...||.+++|..+|..+++++-+
T Consensus 179 ~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 179 PDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred cccccccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999988654
No 260
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.90 E-value=9.7e-08 Score=105.53 Aligned_cols=205 Identities=13% Similarity=0.088 Sum_probs=122.6
Q ss_pred CcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCC---CcEEEEEcCCCCCCCCCCCCCCCceeeccCCC
Q 005502 72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQCHTR 148 (693)
Q Consensus 72 g~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~D---g~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~ 148 (693)
..|.+||.. +.....+ ..+...+.+.+|+|+ ++.|+..+.+ ..|.+||+..+. ...+.....
T Consensus 176 ~~L~~~D~d-G~~~~~l-~~~~~~v~~p~wSPD--G~~la~~s~~~~~~~I~~~dl~~g~-----------~~~l~~~~g 240 (427)
T PRK02889 176 YQLQISDAD-GQNAQSA-LSSPEPIISPAWSPD--GTKLAYVSFESKKPVVYVHDLATGR-----------RRVVANFKG 240 (427)
T ss_pred cEEEEECCC-CCCceEe-ccCCCCcccceEcCC--CCEEEEEEccCCCcEEEEEECCCCC-----------EEEeecCCC
Confidence 357777764 4444445 467788999999999 6777766543 359999998542 112222334
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCC
Q 005502 149 RVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRP 228 (693)
Q Consensus 149 ~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~ 228 (693)
.+...+|+|++..++++.+.+|...+|.+..... ....+.. +........|+|+ +
T Consensus 241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~---------------------~~~~lt~---~~~~~~~~~wSpD-G 295 (427)
T PRK02889 241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGS---------------------GLRRLTQ---SSGIDTEPFFSPD-G 295 (427)
T ss_pred CccceEECCCCCEEEEEEccCCCceEEEEECCCC---------------------CcEECCC---CCCCCcCeEEcCC-C
Confidence 5668899996655666778888877776542210 0001111 1123356789998 5
Q ss_pred cEEEEEe-CCCcEEEEecCC--CCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCC---c
Q 005502 229 HLLLVGG-SDAFARLYDRRM--LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE---H 302 (693)
Q Consensus 229 ~~Latgs-~Dg~I~lwD~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg---~ 302 (693)
+.|+..+ .++...||.+.. ... . .+ ++ .+. ......|||+|++|+..+.++ .
T Consensus 296 ~~l~f~s~~~g~~~Iy~~~~~~g~~-~----------~l-t~-------~g~---~~~~~~~SpDG~~Ia~~s~~~g~~~ 353 (427)
T PRK02889 296 RSIYFTSDRGGAPQIYRMPASGGAA-Q----------RV-TF-------TGS---YNTSPRISPDGKLLAYISRVGGAFK 353 (427)
T ss_pred CEEEEEecCCCCcEEEEEECCCCce-E----------EE-ec-------CCC---CcCceEECCCCCEEEEEEccCCcEE
Confidence 5555444 456667776542 210 0 00 00 111 134578999999998776643 6
Q ss_pred EEEEECCCCCcceEEeecCCCceeEEeccCCCcccccC
Q 005502 303 VYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQP 340 (693)
Q Consensus 303 V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~ 340 (693)
|++||+.++....+ ..........|+|+...+.+..
T Consensus 354 I~v~d~~~g~~~~l--t~~~~~~~p~~spdg~~l~~~~ 389 (427)
T PRK02889 354 LYVQDLATGQVTAL--TDTTRDESPSFAPNGRYILYAT 389 (427)
T ss_pred EEEEECCCCCeEEc--cCCCCccCceECCCCCEEEEEE
Confidence 99999998653322 2223345677888877765544
No 261
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.89 E-value=2.6e-08 Score=100.01 Aligned_cols=236 Identities=17% Similarity=0.229 Sum_probs=148.7
Q ss_pred CcEEEEEECCCC--CEEEEEeCCCcEEEEECCCCc-----------------------------------EEEEeccCCC
Q 005502 51 GCVNAISWNSKG--SLLISGSDDTHINVWSYSSRK-----------------------------------LLHSIETGHS 93 (693)
Q Consensus 51 ~~V~~l~~s~~g--~~LaSgs~Dg~I~IWd~~~~~-----------------------------------~~~~l~~~h~ 93 (693)
..|+.|.|.+++ ..++....|.+|++|.+.... +.+.+..+|+
T Consensus 85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt 164 (433)
T KOG1354|consen 85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT 164 (433)
T ss_pred hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence 578999999865 356667789999999875311 1222335788
Q ss_pred cceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeecc-----CCCCeEEEEEecCCCcEEEEEeC
Q 005502 94 ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC-----HTRRVKKLAVEVGNPHVVWSASE 168 (693)
Q Consensus 94 ~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~-----h~~~V~~l~~sp~~~~~l~Sgs~ 168 (693)
--|.++.++.+ ...++++ .|-.|.+|++....+.. .+.-++. -+.-|++..|+|..-++|+-.+.
T Consensus 165 yhiNSIS~NsD--~Et~lSA-DdLRINLWnlei~d~sF-------nIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSS 234 (433)
T KOG1354|consen 165 YHINSISVNSD--KETFLSA-DDLRINLWNLEIIDQSF-------NIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSS 234 (433)
T ss_pred eEeeeeeecCc--cceEeec-cceeeeeccccccCCce-------eEEEccccCHHHHHHHHhhhccCHhHccEEEEecC
Confidence 99999999887 4666665 68899999998543211 1112222 23568899999988899999999
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCC
Q 005502 169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML 248 (693)
Q Consensus 169 Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~ 248 (693)
.|+|++.|+|....|.... .++....... .......-...|..+.|++. |+++++-.. -+|++||+.+.
T Consensus 235 KGtIrLcDmR~~aLCd~hs--------KlfEepedp~-~rsffseiIsSISDvKFs~s-GryilsRDy-ltvk~wD~nme 303 (433)
T KOG1354|consen 235 KGTIRLCDMRQSALCDAHS--------KLFEEPEDPS-SRSFFSEIISSISDVKFSHS-GRYILSRDY-LTVKLWDLNME 303 (433)
T ss_pred CCcEEEeechhhhhhcchh--------hhhccccCCc-chhhHHHHhhhhhceEEccC-CcEEEEecc-ceeEEEecccc
Confidence 9999999999876551110 0110000000 00011111246788999997 788887543 68999999654
Q ss_pred -CCCcccccCCC--CCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcce
Q 005502 249 -PPLTSCQKRMS--PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRA 315 (693)
Q Consensus 249 -~~~~~~~~~~~--~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~ 315 (693)
+|+.+++.... +.-|-.+ + ...-..-..++|+-++.++++|+....+++|++..+....
T Consensus 304 ~~pv~t~~vh~~lr~kLc~lY-------E-nD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d 365 (433)
T KOG1354|consen 304 AKPVETYPVHEYLRSKLCSLY-------E-NDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKED 365 (433)
T ss_pred CCcceEEeehHhHHHHHHHHh-------h-ccchhheeEEEEcCCcceEecccccceEEEecCCCCccee
Confidence 33333221100 0000000 0 0000123568999999999999999999999987765433
No 262
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.87 E-value=3.5e-07 Score=101.11 Aligned_cols=203 Identities=13% Similarity=0.145 Sum_probs=121.4
Q ss_pred cEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEe---CCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCC
Q 005502 73 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA---GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR 149 (693)
Q Consensus 73 ~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs---~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~ 149 (693)
.|.+||...... ..+ ..+...+.+.+|+|+ |+.|+..+ .+..|.+|++..+.. ..+..+ ...
T Consensus 180 ~l~~~d~dg~~~-~~l-t~~~~~~~~p~wSPD--G~~la~~s~~~g~~~i~i~dl~~G~~--------~~l~~~---~~~ 244 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVV-HRSPQPLMSPAWSPD--GSKLAYVTFESGRSALVIQTLANGAV--------RQVASF---PRH 244 (429)
T ss_pred eEEEEcCCCCCC-EEe-ecCCCceeeeEEcCC--CCEEEEEEecCCCcEEEEEECCCCCe--------EEccCC---CCC
Confidence 688999875543 334 356678999999999 67777543 245789999875421 112222 233
Q ss_pred eEEEEEecCCCcEEEEEeCCC--cEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCC
Q 005502 150 VKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR 227 (693)
Q Consensus 150 V~~l~~sp~~~~~l~Sgs~Dg--~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~ 227 (693)
+..++|+|++..++++.+.+| .|.+||+.++... .+.. +...+....|+|+
T Consensus 245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~-----------------------~lt~---~~~~~~~~~wSPD- 297 (429)
T PRK03629 245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-----------------------QVTD---GRSNNTEPTWFPD- 297 (429)
T ss_pred cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-----------------------EccC---CCCCcCceEECCC-
Confidence 456899996655655656666 4888888765311 1111 1124567899998
Q ss_pred CcEEEEEeC-CCcEEEE--ecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecC---C
Q 005502 228 PHLLLVGGS-DAFARLY--DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---E 301 (693)
Q Consensus 228 ~~~Latgs~-Dg~I~lw--D~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~D---g 301 (693)
++.|+..+. ++...|| |+..+... .+ ...+ .......|+|+|++|+..+.+ .
T Consensus 298 G~~I~f~s~~~g~~~Iy~~d~~~g~~~--------------~l-----t~~~---~~~~~~~~SpDG~~Ia~~~~~~g~~ 355 (429)
T PRK03629 298 SQNLAYTSDQAGRPQVYKVNINGGAPQ--------------RI-----TWEG---SQNQDADVSSDGKFMVMVSSNGGQQ 355 (429)
T ss_pred CCEEEEEeCCCCCceEEEEECCCCCeE--------------Ee-----ecCC---CCccCEEECCCCCEEEEEEccCCCc
Confidence 566665554 4555555 55433210 00 0001 124568899999999876653 4
Q ss_pred cEEEEECCCCCcceEEeecCCCceeEEeccCCCcccccCC
Q 005502 302 HVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPP 341 (693)
Q Consensus 302 ~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~ 341 (693)
.|++||+.++....+. .........|+|+...+.+...
T Consensus 356 ~I~~~dl~~g~~~~Lt--~~~~~~~p~~SpDG~~i~~~s~ 393 (429)
T PRK03629 356 HIAKQDLATGGVQVLT--DTFLDETPSIAPNGTMVIYSSS 393 (429)
T ss_pred eEEEEECCCCCeEEeC--CCCCCCCceECCCCCEEEEEEc
Confidence 6999999886533222 2223345678888777665543
No 263
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.85 E-value=4e-07 Score=91.02 Aligned_cols=261 Identities=15% Similarity=0.145 Sum_probs=149.9
Q ss_pred eccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeC-CCc--EE-
Q 005502 46 LEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-DAE--VR- 120 (693)
Q Consensus 46 l~gH~~~V~~l~~s~~g-~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~-Dg~--V~- 120 (693)
+..-..++.+++|+|+| .+|.+..-|-+|.||.+.+.+....- --..++..++|+|+ |++.+.++. |.. |.
T Consensus 87 Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~--~pK~~~kg~~f~~d--g~f~ai~sRrDCkdyv~i 162 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP--HPKTNVKGYAFHPD--GQFCAILSRRDCKDYVQI 162 (447)
T ss_pred eccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec--ccccCceeEEECCC--CceeeeeecccHHHHHHH
Confidence 44556789999999999 56667778999999999987665432 22345788999998 677666553 211 11
Q ss_pred ----------EEEcCCCCCCC----CCCCCC------CCceeeccC-CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 005502 121 ----------LFNLSRFSGRG----LDDNAI------TPSALYQCH-TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (693)
Q Consensus 121 ----------vwdl~~~~~~~----~~~~~~------~~~~~~~~h-~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~ 179 (693)
-+++.+..... .+.+.. -..+.+.-| .-.++.++|+| .+.+|+.|+.|+.+|+.+--+
T Consensus 163 ~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP-~~qflavGsyD~~lrvlnh~t 241 (447)
T KOG4497|consen 163 SSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSP-CNQFLAVGSYDQMLRVLNHFT 241 (447)
T ss_pred HhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEecc-ccceEEeeccchhhhhhceee
Confidence 11111100000 000000 001111112 35789999999 778999999999998876443
Q ss_pred CCCCCC------------------------------------CCCCCcccceEEEeccC-----CceeeecCCCCCccce
Q 005502 180 GSSCPP------------------------------------AGSSHQECRNILLDLRC-----GAKRSLADPPKQTLSL 218 (693)
Q Consensus 180 ~~~~~~------------------------------------~~~~~~~~~~~l~~~~~-----~~~~~l~~~~~~~~~v 218 (693)
-+.... ...+..+...+++.... ...++....+.....+
T Consensus 242 Wk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~ 321 (447)
T KOG4497|consen 242 WKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGA 321 (447)
T ss_pred eeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCccccc
Confidence 321100 00000000011111110 0111222334445677
Q ss_pred EEEEEcCCCCcEEEEEeC--CCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEE
Q 005502 219 KSCDISSTRPHLLLVGGS--DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL 296 (693)
Q Consensus 219 ~sl~~sp~~~~~Latgs~--Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~s 296 (693)
.-++|+++ ..+++|-.. -..+.+||++..+....+. ...+|....|+|....|+.
T Consensus 322 g~lafs~D-s~y~aTrnd~~PnalW~Wdlq~l~l~avLi----------------------Qk~piraf~WdP~~prL~v 378 (447)
T KOG4497|consen 322 GKLAFSCD-STYAATRNDKYPNALWLWDLQNLKLHAVLI----------------------QKHPIRAFEWDPGRPRLVV 378 (447)
T ss_pred ceeeecCC-ceEEeeecCCCCceEEEEechhhhhhhhhh----------------------hccceeEEEeCCCCceEEE
Confidence 88999997 566666533 2568999999865432211 1126999999999999999
Q ss_pred EecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCc
Q 005502 297 SYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNG 335 (693)
Q Consensus 297 gs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~g 335 (693)
+.+...+|+|-..... .-.....+-.+..++|.-...-
T Consensus 379 ctg~srLY~W~psg~~-~V~vP~~GF~i~~l~W~~~g~~ 416 (447)
T KOG4497|consen 379 CTGKSRLYFWAPSGPR-VVGVPKKGFNIQKLQWLQPGEF 416 (447)
T ss_pred EcCCceEEEEcCCCce-EEecCCCCceeeeEEecCCCcE
Confidence 9999999999877621 1112222344555666554433
No 264
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.84 E-value=1.1e-08 Score=107.76 Aligned_cols=176 Identities=16% Similarity=0.210 Sum_probs=124.3
Q ss_pred EEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC-------CcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCC
Q 005502 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS-------RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD 116 (693)
Q Consensus 44 ~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~-------~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~D 116 (693)
..+.||+..|..|.--.+.+-+++++.|++|++|.+.. ..+..++ +.|+.+|.++.|..+ .+.++++ |
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY-~aHkk~i~~igfL~~--lr~i~Sc--D 803 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTY-QAHKKPIHDIGFLAD--LRSIASC--D 803 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEh-hhccCcccceeeeec--cceeeec--c
Confidence 45789999999998777888899999999999999863 2355555 789999999999988 4677655 8
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCceee--ccCCCCeEEEEEecC-CCcE-EEEEeCCCcEEEEeCCCCCCCCCCCCCCcc
Q 005502 117 AEVRLFNLSRFSGRGLDDNAITPSALY--QCHTRRVKKLAVEVG-NPHV-VWSASEDGTLRQHDFRQGSSCPPAGSSHQE 192 (693)
Q Consensus 117 g~V~vwdl~~~~~~~~~~~~~~~~~~~--~~h~~~V~~l~~sp~-~~~~-l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~ 192 (693)
+-|++||.-.+. ++... ....+.+..+..-|. +..+ ++-++...+|+++|.|...-.
T Consensus 804 ~giHlWDPFigr----------~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~--------- 864 (1034)
T KOG4190|consen 804 GGIHLWDPFIGR----------LLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWT--------- 864 (1034)
T ss_pred Ccceeecccccc----------hhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccce---------
Confidence 999999986431 12111 111222333333332 3334 444478899999999876521
Q ss_pred cceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccc
Q 005502 193 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ 255 (693)
Q Consensus 193 ~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~ 255 (693)
|. ..+...++....+.++++-|. |+++++|-..|.|.+.|.|+++.+.+++
T Consensus 865 ~E-----------~kVcna~~Pna~~R~iaVa~~-GN~lAa~LSnGci~~LDaR~G~vINswr 915 (1034)
T KOG4190|consen 865 CE-----------LKVCNAPGPNALTRAIAVADK-GNKLAAALSNGCIAILDARNGKVINSWR 915 (1034)
T ss_pred ee-----------EEeccCCCCchheeEEEeccC-cchhhHHhcCCcEEEEecCCCceeccCC
Confidence 11 122333344567889999996 7899999999999999999998766553
No 265
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.83 E-value=5.6e-08 Score=96.25 Aligned_cols=239 Identities=14% Similarity=0.224 Sum_probs=151.4
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCc-----EEEEeccCCC------------cceEEEEEeeCCCCCEEE
Q 005502 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-----LLHSIETGHS------------ANVFCTKFVPETSDELVV 111 (693)
Q Consensus 49 H~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~-----~~~~l~~~h~------------~~I~sl~f~p~~~~~~l~ 111 (693)
....|+++.|...|.+|++|..-|+|.+|.-.... ....+ ++|. ..|..+.|...++-..++
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teF-Qshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEF-QSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhh-cccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 34679999999999999999999999999865432 22223 3442 467889998776455677
Q ss_pred EEeCCCcEEEEEcCCCCCCCCCCC--------------------------------CCCCceee-ccCCCCeEEEEEecC
Q 005502 112 SGAGDAEVRLFNLSRFSGRGLDDN--------------------------------AITPSALY-QCHTRRVKKLAVEVG 158 (693)
Q Consensus 112 sgs~Dg~V~vwdl~~~~~~~~~~~--------------------------------~~~~~~~~-~~h~~~V~~l~~sp~ 158 (693)
..+.|.+|++|.+.....+....+ ...|...+ ..|.-.|.+|.|+.
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns- 182 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS- 182 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC-
Confidence 778899999999875421111000 00112222 46777889999987
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCC
Q 005502 159 NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA 238 (693)
Q Consensus 159 ~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg 238 (693)
+...++ .+.|=.|.+|++.-...+ -.+.++....... -...|++..|+|.....+.-.++.|
T Consensus 183 D~et~l-SaDdLrINLWnl~i~D~s-----------FnIVDiKP~nmee------LteVItSaeFhp~~cn~fmYSsSkG 244 (460)
T COG5170 183 DKETLL-SADDLRINLWNLEIIDGS-----------FNIVDIKPHNMEE------LTEVITSAEFHPEMCNVFMYSSSKG 244 (460)
T ss_pred chheee-eccceeeeeccccccCCc-----------eEEEeccCccHHH------HHHHHhhcccCHhHcceEEEecCCC
Confidence 444553 456788999998764322 3344443322111 1235788999998888899999999
Q ss_pred cEEEEecCCCCCCc---ccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcce
Q 005502 239 FARLYDRRMLPPLT---SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRA 315 (693)
Q Consensus 239 ~I~lwD~r~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~ 315 (693)
.|++-|+|....-. ++-.....+..+..| .+- -..|..+.|+++|+++++-.. -+|.|||++..+.+.
T Consensus 245 ~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff-------~ei-vsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pi 315 (460)
T COG5170 245 EIKLNDLRQSALCDNSKKLFELTIDGVDVDFF-------EEI-VSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPI 315 (460)
T ss_pred cEEehhhhhhhhccCchhhhhhccCcccchhH-------HHH-hhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCc
Confidence 99999999532100 000000000000011 001 124888999999999887654 489999999865444
Q ss_pred E
Q 005502 316 M 316 (693)
Q Consensus 316 ~ 316 (693)
.
T Consensus 316 k 316 (460)
T COG5170 316 K 316 (460)
T ss_pred e
Confidence 3
No 266
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.83 E-value=1.4e-08 Score=110.39 Aligned_cols=241 Identities=15% Similarity=0.161 Sum_probs=162.8
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEECCC-CcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCC
Q 005502 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSS-RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 128 (693)
Q Consensus 50 ~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~-~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~ 128 (693)
.++++++..+|.|.-+|.++.-| +.|-|+.. ..+.+-+.....-.|-.+.|+|...-.+-++......-.+|++...+
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 46789999999999999998876 45556653 23333231112345778899987544455555556677789998654
Q ss_pred CCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeee
Q 005502 129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 208 (693)
Q Consensus 129 ~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 208 (693)
.+ .....+.+|+..|+.+-|+|+.+.++++++.|-.|..||+|+.+.. ...++
T Consensus 103 ~~-------aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p-----------~ys~~--------- 155 (1081)
T KOG0309|consen 103 SN-------AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRP-----------FYSTS--------- 155 (1081)
T ss_pred cc-------ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcc-----------eeeee---------
Confidence 33 2355677899999999999999999999999999999999997643 11111
Q ss_pred cCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEc
Q 005502 209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS 288 (693)
Q Consensus 209 ~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fs 288 (693)
........++|+-.+++.+| .+....|++||+|.+... +... ++|.. .|+.+.|.
T Consensus 156 ----~w~s~asqVkwnyk~p~vla-sshg~~i~vwd~r~gs~p------------l~s~-------K~~vs-~vn~~~fn 210 (1081)
T KOG0309|consen 156 ----SWRSAASQVKWNYKDPNVLA-SSHGNDIFVWDLRKGSTP------------LCSL-------KGHVS-SVNSIDFN 210 (1081)
T ss_pred ----cccccCceeeecccCcchhh-hccCCceEEEeccCCCcc------------eEEe-------cccce-eeehHHHh
Confidence 11234567889887675554 456788999999976421 1111 22333 47888887
Q ss_pred C-CCCEEEEEecCCcEEEEECCCCCcc-eEEeecCCCceeEEeccCCCcccccCCcc
Q 005502 289 P-NGEEVLLSYSGEHVYLMDVNHAGGR-AMRYTVGDASKIMSFTPTLNGLELQPPIH 343 (693)
Q Consensus 289 p-dg~~L~sgs~Dg~V~lwDl~~~~~~-~~~~~~~~~~~~~~~~p~~~g~~~~~~~~ 343 (693)
. ....+++++.|++|..||....... ........++...++-|..+|.-+.+..+
T Consensus 211 r~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G 267 (1081)
T KOG0309|consen 211 RFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVG 267 (1081)
T ss_pred hhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccC
Confidence 5 4457889999999999999875433 33334455566666777766655544433
No 267
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.82 E-value=1.1e-06 Score=96.76 Aligned_cols=231 Identities=13% Similarity=0.075 Sum_probs=127.8
Q ss_pred EeccCCCcEEEEEECCCCCEEE---EEeCCC--cEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEe-CCC-
Q 005502 45 ELEGHQGCVNAISWNSKGSLLI---SGSDDT--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA-GDA- 117 (693)
Q Consensus 45 ~l~gH~~~V~~l~~s~~g~~La---Sgs~Dg--~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs-~Dg- 117 (693)
.|..+...+.+=.|+|||+.++ +...++ .|.+.++.+++... + ....+.....+|+|+ |+.|+..+ .+|
T Consensus 179 ~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-l-t~~~g~~~~p~wSPD--G~~Laf~s~~~g~ 254 (428)
T PRK01029 179 PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-I-LALQGNQLMPTFSPR--KKLLAFISDRYGN 254 (428)
T ss_pred EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-e-ecCCCCccceEECCC--CCEEEEEECCCCC
Confidence 3444556677789999997522 443343 47777888775433 2 234555677899999 56666544 223
Q ss_pred ---cEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccc
Q 005502 118 ---EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (693)
Q Consensus 118 ---~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~ 194 (693)
.+.+|++...... .+......+.......+|+|++..++++...+|...+|.+.....
T Consensus 255 ~di~~~~~~~~~g~~g-------~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~------------ 315 (428)
T PRK01029 255 PDLFIQSFSLETGAIG-------KPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPE------------ 315 (428)
T ss_pred cceeEEEeecccCCCC-------cceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccc------------
Confidence 3344666532100 122222222234567899995554555555677666664422100
Q ss_pred eEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCC---CcEEEEecCCCCCCcccccCCCCCCcccccccCc
Q 005502 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 271 (693)
Q Consensus 195 ~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~D---g~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (693)
.+....+.. ....+....|+|+ ++.|+..+.+ ..|.+||+.+++... +.
T Consensus 316 -------g~~~~~lt~---~~~~~~~p~wSPD-G~~Laf~~~~~g~~~I~v~dl~~g~~~~--------------Lt--- 367 (428)
T PRK01029 316 -------GQSPRLLTK---KYRNSSCPAWSPD-GKKIAFCSVIKGVRQICVYDLATGRDYQ--------------LT--- 367 (428)
T ss_pred -------ccceEEecc---CCCCccceeECCC-CCEEEEEEcCCCCcEEEEEECCCCCeEE--------------cc---
Confidence 000001111 1124457789998 5666655432 468999987654210 00
Q ss_pred cccCCCCccceEEEEEcCCCCEEEEEec---CCcEEEEECCCCCcceEEeecCCCceeEEeccC
Q 005502 272 LSEHGRSSLHLTHVTFSPNGEEVLLSYS---GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT 332 (693)
Q Consensus 272 ~~~~~h~~~~V~~v~fspdg~~L~sgs~---Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~ 332 (693)
.+ ...+....|+|||+.|+.... ...|++||+.+++...+. .........+|+|.
T Consensus 368 ---~~--~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt-~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 368 ---TS--PENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV-IGSGEKRFPSWGAF 425 (428)
T ss_pred ---CC--CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCcccCceecCC
Confidence 00 012567899999998875543 457999999886533333 22333445666654
No 268
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.81 E-value=6.3e-07 Score=98.82 Aligned_cols=201 Identities=13% Similarity=0.103 Sum_probs=121.0
Q ss_pred CcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCC---CcEEEEEcCCCCCCCCCCCCCCCceeeccCCC
Q 005502 72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQCHTR 148 (693)
Q Consensus 72 g~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~D---g~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~ 148 (693)
..|.++|..... ...+ ..+...+.+.+|+|+ ++.|+.+..+ ..|++||+.... ...+..+..
T Consensus 170 ~~l~~~d~~g~~-~~~l-~~~~~~~~~p~~Spd--g~~la~~~~~~~~~~i~v~d~~~g~-----------~~~~~~~~~ 234 (417)
T TIGR02800 170 YELQVADYDGAN-PQTI-TRSREPILSPAWSPD--GQKLAYVSFESGKPEIYVQDLATGQ-----------REKVASFPG 234 (417)
T ss_pred ceEEEEcCCCCC-CEEe-ecCCCceecccCCCC--CCEEEEEEcCCCCcEEEEEECCCCC-----------EEEeecCCC
Confidence 358888875443 3444 356667999999999 6778776643 479999998532 222333455
Q ss_pred CeEEEEEecCCCcEEEEEeCCC--cEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCC
Q 005502 149 RVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST 226 (693)
Q Consensus 149 ~V~~l~~sp~~~~~l~Sgs~Dg--~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~ 226 (693)
.+..++|+|++..++++.+.++ .|.+||+.++... .+.. +........|+|+
T Consensus 235 ~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-----------------------~l~~---~~~~~~~~~~s~d 288 (417)
T TIGR02800 235 MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-----------------------RLTN---GPGIDTEPSWSPD 288 (417)
T ss_pred CccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-----------------------ECCC---CCCCCCCEEECCC
Confidence 6677899996555666666655 4888887764311 0110 1112235679997
Q ss_pred CCcEEEEEeC-CC--cEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCC--
Q 005502 227 RPHLLLVGGS-DA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE-- 301 (693)
Q Consensus 227 ~~~~Latgs~-Dg--~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg-- 301 (693)
+..|+..+. ++ .|++||+...+.. .+ .. + ...+..+.|+|+|++|+.++.++
T Consensus 289 -g~~l~~~s~~~g~~~iy~~d~~~~~~~--------------~l-----~~--~-~~~~~~~~~spdg~~i~~~~~~~~~ 345 (417)
T TIGR02800 289 -GKSIAFTSDRGGSPQIYMMDADGGEVR--------------RL-----TF--R-GGYNASPSWSPDGDLIAFVHREGGG 345 (417)
T ss_pred -CCEEEEEECCCCCceEEEEECCCCCEE--------------Ee-----ec--C-CCCccCeEECCCCCEEEEEEccCCc
Confidence 556655443 33 5777776643211 00 00 0 11356789999999999888765
Q ss_pred -cEEEEECCCCCcceEEeecCCCceeEEeccCCCcccc
Q 005502 302 -HVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLEL 338 (693)
Q Consensus 302 -~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~ 338 (693)
.|++||+.++.. ..+.. ........|+|+...+.+
T Consensus 346 ~~i~~~d~~~~~~-~~l~~-~~~~~~p~~spdg~~l~~ 381 (417)
T TIGR02800 346 FNIAVMDLDGGGE-RVLTD-TGLDESPSFAPNGRMILY 381 (417)
T ss_pred eEEEEEeCCCCCe-EEccC-CCCCCCceECCCCCEEEE
Confidence 899999988442 22221 222334467776655544
No 269
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.81 E-value=1.5e-08 Score=102.03 Aligned_cols=112 Identities=14% Similarity=0.153 Sum_probs=102.6
Q ss_pred ccCcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhcc
Q 005502 357 ATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRI 436 (693)
Q Consensus 357 ~~~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~l 436 (693)
...+..+++..+.|+.++..|+ |..|+-.|-.||+..|++ ...+..||..||-++. -..|+.|..++|++
T Consensus 32 ~~~~advekhlElGk~lla~~Q-~sDALt~yHaAve~dp~~------Y~aifrRaT~yLAmGk---sk~al~Dl~rVlel 101 (504)
T KOG0624|consen 32 TASPADVEKHLELGKELLARGQ-LSDALTHYHAAVEGDPNN------YQAIFRRATVYLAMGK---SKAALQDLSRVLEL 101 (504)
T ss_pred cCCHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHcCCchh------HHHHHHHHHHHhhhcC---CccchhhHHHHHhc
Confidence 4456778889999999999999 999999999999999887 7778899999999766 78899999999999
Q ss_pred CCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhH
Q 005502 437 DSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA 478 (693)
Q Consensus 437 dp~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~ 478 (693)
.|+..-|-..|+-.|++.|++++|..+|+.++..+|++....
T Consensus 102 KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~ 143 (504)
T KOG0624|consen 102 KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVL 143 (504)
T ss_pred CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhH
Confidence 999999999999999999999999999999999999775443
No 270
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.79 E-value=6.1e-08 Score=95.12 Aligned_cols=126 Identities=12% Similarity=0.052 Sum_probs=106.0
Q ss_pred cccCcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHH-HhccccCcHHHHHHhHhHhh
Q 005502 356 VATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALL-LKRKWKNDAQMAIRDCYNAR 434 (693)
Q Consensus 356 ~~~~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~-lk~~~~~d~~~A~~Dc~~Al 434 (693)
....++..+.+...|.-+...|+ |..|+..|.+|+...|++ ..++.+.|.++ ...+. .++.+|+.-..+|+
T Consensus 66 L~~~P~~~~~w~~Lg~~~~~~g~-~~~A~~a~~~Al~l~P~~------~~~~~~lA~aL~~~~g~-~~~~~A~~~l~~al 137 (198)
T PRK10370 66 IRANPQNSEQWALLGEYYLWRND-YDNALLAYRQALQLRGEN------AELYAALATVLYYQAGQ-HMTPQTREMIDKAL 137 (198)
T ss_pred HHHCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHH
Confidence 34466777888888999999999 999999999999999987 88999999986 44332 23589999999999
Q ss_pred ccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHHHHHHHHHHHH
Q 005502 435 RIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAET 493 (693)
Q Consensus 435 ~ldp~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l~~~i~~~~~ 493 (693)
+++|+++.+++.+|.+++.+|++++|+..+++++++.|.+.+-.+.+ +.|+.|+.
T Consensus 138 ~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i----~~i~~a~~ 192 (198)
T PRK10370 138 ALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV----ESINMAKL 192 (198)
T ss_pred HhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH----HHHHHHHH
Confidence 99999999999999999999999999999999999999876644333 44666654
No 271
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.75 E-value=2.8e-08 Score=99.87 Aligned_cols=93 Identities=23% Similarity=0.384 Sum_probs=81.9
Q ss_pred cchhhhccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEE
Q 005502 32 MHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV 111 (693)
Q Consensus 32 ~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~ 111 (693)
+-+.+...+.++.++.+|.++|.+++|.+...+|.+|..|..|.+||+...+-+.....+|...|..+.+.+.. ..++
T Consensus 179 ~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t--~~l~ 256 (404)
T KOG1409|consen 179 MLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHT--RQLI 256 (404)
T ss_pred EEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhh--eeee
Confidence 33456677889999999999999999999999999999999999999987765554447999999999999884 8999
Q ss_pred EEeCCCcEEEEEcCC
Q 005502 112 SGAGDAEVRLFNLSR 126 (693)
Q Consensus 112 sgs~Dg~V~vwdl~~ 126 (693)
+++.||.|-+|+++.
T Consensus 257 S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 257 SCGEDGGIVVWNMNV 271 (404)
T ss_pred eccCCCeEEEEeccc
Confidence 999999999999985
No 272
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.75 E-value=8e-08 Score=93.23 Aligned_cols=171 Identities=15% Similarity=0.139 Sum_probs=110.1
Q ss_pred ccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC-cEEEEeccCCCcceEEEEEeeCCCCCEEEEEeC---
Q 005502 40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAG--- 115 (693)
Q Consensus 40 l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~-~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~--- 115 (693)
..+.+.+..|+++=.+-..+-.++.++++..||.+.+.+.+.- .....+...|.+ -.+.++... ++.+.++..
T Consensus 79 i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~--~~~i~s~~~g~~ 155 (319)
T KOG4714|consen 79 IDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRH--GNSILSGGCGNW 155 (319)
T ss_pred cCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhccccccc-ccccceeec--ccEEecCCcceE
Confidence 3445555555554444344445678999999999999997642 112223222322 344555554 344444432
Q ss_pred --CCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCccc
Q 005502 116 --DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 193 (693)
Q Consensus 116 --Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~ 193 (693)
-+..+.|+++... .......-...|.+++-+|...+++++|+.||.|.+||.|....+
T Consensus 156 n~~d~~~a~~~~p~~----------t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p---------- 215 (319)
T KOG4714|consen 156 NAQDNFYANTLDPIK----------TLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP---------- 215 (319)
T ss_pred eeccceeeecccccc----------cccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccch----------
Confidence 1234455554211 111111123459999999988899999999999999999986321
Q ss_pred ceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCC
Q 005502 194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (693)
Q Consensus 194 ~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~ 247 (693)
......|..++..+.|+|.+|..|.+++.||.+..||..+
T Consensus 216 --------------~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 216 --------------VSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred --------------HHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 2222356778999999999999999999999999999874
No 273
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.3e-08 Score=103.47 Aligned_cols=132 Identities=20% Similarity=0.126 Sum_probs=112.2
Q ss_pred ccCcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCC-------------CCCcchhhhhhhHHHHHHhccccCcH
Q 005502 357 ATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSG-------------IGPMLRHECLCIRAALLLKRKWKNDA 423 (693)
Q Consensus 357 ~~~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~-------------~~~~~~~~~~~NRA~~~lk~~~~~d~ 423 (693)
.......+..++.||..|+.++ |..|...|.+++.+.... ..++++..++.|-|+|-+|.+. +
T Consensus 216 ~~~~~~~~~~k~~~~~~~kk~~-~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~---~ 291 (372)
T KOG0546|consen 216 DKALEREEKKKNIGNKEFKKQR-YREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKG---R 291 (372)
T ss_pred chhhhhhhhhhccchhhhhhcc-HhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccC---C
Confidence 3345566778889999999999 999999999999875410 1233445588999999999654 7
Q ss_pred HHHHHhHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHHHHHHHHHHH
Q 005502 424 QMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAE 492 (693)
Q Consensus 424 ~~A~~Dc~~Al~ldp~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l~~~i~~~~ 492 (693)
..|+..|..+++.++...||||||++++..+.++++|+++++.++...|+++.+.+.+...++.+.+..
T Consensus 292 ~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~ 360 (372)
T KOG0546|consen 292 GGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYN 360 (372)
T ss_pred CcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHH
Confidence 889999999999999999999999999999999999999999999999999999888888887776654
No 274
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.72 E-value=5.2e-07 Score=96.91 Aligned_cols=191 Identities=17% Similarity=0.192 Sum_probs=138.7
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEecc--CCCcceEEEEEe------eC------------CCCCEEEEEeCCCcE
Q 005502 60 SKGSLLISGSDDTHINVWSYSSRKLLHSIET--GHSANVFCTKFV------PE------------TSDELVVSGAGDAEV 119 (693)
Q Consensus 60 ~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~--~h~~~I~sl~f~------p~------------~~~~~l~sgs~Dg~V 119 (693)
|.+.++|....||.++||+...++....+.. .-.+..++++|. |- .+-..++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567999999999999999999887776632 123445555554 20 012478888889999
Q ss_pred EEEEcCCCCCCCCCCCCCCCceee--ccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEE
Q 005502 120 RLFNLSRFSGRGLDDNAITPSALY--QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (693)
Q Consensus 120 ~vwdl~~~~~~~~~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l 197 (693)
.+|++..+ +....+ .+|...|.++.++. .-.+|.|++.|+.+.+|+....... .+
T Consensus 83 ~~ys~~~g----------~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~------------~~ 139 (541)
T KOG4547|consen 83 LLYSVAGG----------EITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVII------------RI 139 (541)
T ss_pred EEEEecCC----------eEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceee------------ee
Confidence 99999854 222222 47999999999987 6678889999999999998775411 11
Q ss_pred EeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCC
Q 005502 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 277 (693)
Q Consensus 198 ~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 277 (693)
| ......+.+++++|+ +..+++++ +.|++||+.+.+.+. +| .||
T Consensus 140 ~-------------~~~~~~~~sl~is~D-~~~l~~as--~~ik~~~~~~kevv~-------------~f-------tgh 183 (541)
T KOG4547|consen 140 W-------------KEQKPLVSSLCISPD-GKILLTAS--RQIKVLDIETKEVVI-------------TF-------TGH 183 (541)
T ss_pred e-------------ccCCCccceEEEcCC-CCEEEecc--ceEEEEEccCceEEE-------------Ee-------cCC
Confidence 1 123456789999998 78898886 479999999876443 33 445
Q ss_pred CccceEEEEEcCC-----CCEEEEEec-CCcEEEEECCC
Q 005502 278 SSLHLTHVTFSPN-----GEEVLLSYS-GEHVYLMDVNH 310 (693)
Q Consensus 278 ~~~~V~~v~fspd-----g~~L~sgs~-Dg~V~lwDl~~ 310 (693)
.+ +|.++.|.-+ |.+++++.. +..|.+|-+..
T Consensus 184 ~s-~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 184 GS-PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Cc-ceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 55 6999999877 888887765 66777887665
No 275
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.72 E-value=3.4e-08 Score=99.51 Aligned_cols=127 Identities=22% Similarity=0.175 Sum_probs=102.6
Q ss_pred cchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCC
Q 005502 360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSS 439 (693)
Q Consensus 360 ~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~ 439 (693)
+.++.+..+.+....+++. |..+++.|.+.++..|.. ..++...+.-...||-+ ++.+.+||+.|.++|+++|+
T Consensus 266 lkKv~K~les~e~~ie~~~-~t~cle~ge~vlk~ep~~--~~ir~~~~r~~c~C~~~---d~~~~eAiqqC~evL~~d~~ 339 (504)
T KOG0624|consen 266 LKKVVKSLESAEQAIEEKH-WTECLEAGEKVLKNEPEE--TMIRYNGFRVLCTCYRE---DEQFGEAIQQCKEVLDIDPD 339 (504)
T ss_pred HHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHhcCCcc--cceeeeeeheeeecccc---cCCHHHHHHHHHHHHhcCch
Confidence 3455666667777888888 999999999999988763 22222333333455555 46699999999999999999
Q ss_pred CcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHHHHHHHHHHH
Q 005502 440 SFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAE 492 (693)
Q Consensus 440 ~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l~~~i~~~~ 492 (693)
++.++..||.||+.-+.|++|+.+|+++++++|+|..+++.+++.++..++..
T Consensus 340 dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~ 392 (504)
T KOG0624|consen 340 DVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSG 392 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999888887777655543
No 276
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.69 E-value=2.1e-08 Score=80.45 Aligned_cols=66 Identities=24% Similarity=0.233 Sum_probs=62.4
Q ss_pred hhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhc-cHHHHHHHHHHHcccCC
Q 005502 404 HECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLC-KYKEALDFAIAAQCLDP 472 (693)
Q Consensus 404 ~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~KA~~r~a~al~~l~-~~~eA~~~~~~~~~~~p 472 (693)
+..|.++|.++++. +++..|+..+.+||+++|+++.+++++|.|+..+| ++++|+++++++++++|
T Consensus 3 a~~~~~~g~~~~~~---~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQ---GDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHT---THHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 56789999999995 55999999999999999999999999999999999 89999999999999988
No 277
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=1.5e-08 Score=104.44 Aligned_cols=97 Identities=12% Similarity=0.018 Sum_probs=90.3
Q ss_pred CcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCC
Q 005502 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS 438 (693)
Q Consensus 359 ~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp 438 (693)
....+++.+++||.+++..+ |..|+..|+.||+.+|++ +..|.|||++|+..+. |..|+-|+.+.++++|
T Consensus 45 ~~~~Ae~~k~~gn~~yk~k~-Y~nal~~yt~Ai~~~pd~------a~yy~nRAa~~m~~~~---~~~a~~dar~~~r~kd 114 (486)
T KOG0550|consen 45 AAQQAEEAKEEGNAFYKQKT-YGNALKNYTFAIDMCPDN------ASYYSNRAATLMMLGR---FEEALGDARQSVRLKD 114 (486)
T ss_pred HHHHHHHHHhhcchHHHHhh-HHHHHHHHHHHHHhCccc------hhhhchhHHHHHHHHh---HhhcccchhhheecCC
Confidence 34568899999999999999 999999999999999988 8899999999999765 9999999999999999
Q ss_pred CCcchhhhHHHHHHHhccHHHHHHHHH
Q 005502 439 SSFRAHLYMSEALEQLCKYKEALDFAI 465 (693)
Q Consensus 439 ~~~KA~~r~a~al~~l~~~~eA~~~~~ 465 (693)
..+|++.|.++|+.+++...+|.+.|+
T Consensus 115 ~~~k~~~r~~~c~~a~~~~i~A~~~~~ 141 (486)
T KOG0550|consen 115 GFSKGQLREGQCHLALSDLIEAEEKLK 141 (486)
T ss_pred CccccccchhhhhhhhHHHHHHHHHhh
Confidence 999999999999999999999987776
No 278
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.68 E-value=3.2e-06 Score=82.59 Aligned_cols=212 Identities=13% Similarity=0.066 Sum_probs=138.6
Q ss_pred EEEECC-----CCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCC
Q 005502 55 AISWNS-----KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (693)
Q Consensus 55 ~l~~s~-----~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~ 129 (693)
.+.|-| ...+||.|+.-|...+|.+.+.+....+...|...|+-+.=.-+. ..-+..++.|.++++.++.....
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~-~~~~~i~sndht~k~~~~~~~s~ 150 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDL-KFPLNIASNDHTGKTMVVSGDSN 150 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhccc-ccceeeccCCcceeEEEEecCcc
Confidence 355555 345899999999999999987765444434454444433222221 23456678899999999986432
Q ss_pred CCCCCCCCCCceeeccCCC--CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceee
Q 005502 130 RGLDDNAITPSALYQCHTR--RVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (693)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~~--~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 207 (693)
.+..|.. .+.+++++| ++.++++.+....|-.|.+...... ... ++.
T Consensus 151 ------------~~~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey---------~~~-~~~-------- 199 (344)
T KOG4532|consen 151 ------------KFAVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEY---------IEN-IYE-------- 199 (344)
T ss_pred ------------cceeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccce---------eee-eEe--------
Confidence 1122333 378899999 7899999999999999998764311 001 110
Q ss_pred ecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEE
Q 005502 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 287 (693)
Q Consensus 208 l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~f 287 (693)
.. ....-.+.+|+.. ...+|++..||++.|||+|.......... ..+.|+++.+..+.|
T Consensus 200 -a~---t~D~gF~~S~s~~-~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s----------------strp~hnGa~R~c~F 258 (344)
T KOG4532|consen 200 -AP---TSDHGFYNSFSEN-DLQFAVVFQDGTCAIYDVRNMATPMAEIS----------------STRPHHNGAFRVCRF 258 (344)
T ss_pred -cc---cCCCceeeeeccC-cceEEEEecCCcEEEEEecccccchhhhc----------------ccCCCCCCceEEEEe
Confidence 11 1123357788886 57999999999999999997542211110 112244457999999
Q ss_pred cCCCC--EEEEEecCCcEEEEECCCCCcceEEee
Q 005502 288 SPNGE--EVLLSYSGEHVYLMDVNHAGGRAMRYT 319 (693)
Q Consensus 288 spdg~--~L~sgs~Dg~V~lwDl~~~~~~~~~~~ 319 (693)
++-|. .|+..-.=+.+.+-|+++.....++..
T Consensus 259 sl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i 292 (344)
T KOG4532|consen 259 SLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVI 292 (344)
T ss_pred cCCCcceEEEEecCcceEEEEEcccCceeeEEec
Confidence 98774 555665678999999999776555543
No 279
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.67 E-value=1.3e-06 Score=94.13 Aligned_cols=253 Identities=12% Similarity=0.115 Sum_probs=143.1
Q ss_pred ccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEe-CC
Q 005502 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA-GD 116 (693)
Q Consensus 38 ~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs-~D 116 (693)
.+.+.+.++......-..+.|+|||+++.+++.||.|.++|+.+++.+.++..+ ....+++++|+ |++++++. .+
T Consensus 24 ~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G--~~~~~i~~s~D--G~~~~v~n~~~ 99 (369)
T PF02239_consen 24 ATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG--GNPRGIAVSPD--GKYVYVANYEP 99 (369)
T ss_dssp TT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S--SEEEEEEE--T--TTEEEEEEEET
T ss_pred CCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC--CCcceEEEcCC--CCEEEEEecCC
Confidence 446677788765554456789999999999999999999999999999998543 35688999999 67777664 68
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCceeecc-------CCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCC
Q 005502 117 AEVRLFNLSRFSGRGLDDNAITPSALYQC-------HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS 189 (693)
Q Consensus 117 g~V~vwdl~~~~~~~~~~~~~~~~~~~~~-------h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~ 189 (693)
+.|.++|..+. ++++.+.. ...++..|..+|..+.++++.-+-+.|.+.|.......
T Consensus 100 ~~v~v~D~~tl----------e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~------ 163 (369)
T PF02239_consen 100 GTVSVIDAETL----------EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL------ 163 (369)
T ss_dssp TEEEEEETTT------------EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE------
T ss_pred CceeEeccccc----------cceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc------
Confidence 99999999864 44444432 34578888888866556656666688888887654311
Q ss_pred CcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEE-EeCCCcEEEEecCCCCCCcccccCCCCCCcccccc
Q 005502 190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV-GGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFC 268 (693)
Q Consensus 190 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Lat-gs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~ 268 (693)
....+ . .........|+|+ ++++++ ......|-++|..+.+.+..+.....|.
T Consensus 164 ----~~~~i--~------------~g~~~~D~~~dpd-gry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~------- 217 (369)
T PF02239_consen 164 ----KVTTI--K------------VGRFPHDGGFDPD-GRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPH------- 217 (369)
T ss_dssp ----EEEEE--E--------------TTEEEEEE-TT-SSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBE-------
T ss_pred ----ceeee--c------------ccccccccccCcc-cceeeecccccceeEEEeeccceEEEEeecccccc-------
Confidence 00011 0 1124567899998 455554 5567789999988765443322111110
Q ss_pred cCccccCCCCcc-ceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCccccc
Q 005502 269 PMHLSEHGRSSL-HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQ 339 (693)
Q Consensus 269 ~~~~~~~~h~~~-~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~ 339 (693)
+.....--|... +++. ....+...++.-+...+.+||..+.+....+...+.+ -.+..+|+.+-+-..
T Consensus 218 ~~~~~~~php~~g~vw~--~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd 286 (369)
T PF02239_consen 218 PGPGANFPHPGFGPVWA--TSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVD 286 (369)
T ss_dssp ETTEEEEEETTTEEEEE--EEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE
T ss_pred ccccccccCCCcceEEe--eccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEee
Confidence 000000001111 2222 2234455555555667778999987755555554444 566778877665444
No 280
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.66 E-value=3.8e-06 Score=90.47 Aligned_cols=201 Identities=16% Similarity=0.156 Sum_probs=124.5
Q ss_pred CEE-EEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCce
Q 005502 63 SLL-ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA 141 (693)
Q Consensus 63 ~~L-aSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~ 141 (693)
+++ ++-..++.|.|.|..+.+.+..+..++ ..-..+.|+|+ ++++++++.||.|.++|+.+. +.+.
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~-~~h~~~~~s~D--gr~~yv~~rdg~vsviD~~~~----------~~v~ 72 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGG-APHAGLKFSPD--GRYLYVANRDGTVSVIDLATG----------KVVA 72 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-ST-TEEEEEE-TT---SSEEEEEETTSEEEEEETTSS----------SEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCC-CceeEEEecCC--CCEEEEEcCCCeEEEEECCcc----------cEEE
Confidence 344 456678999999999999999995433 33456789998 688999999999999999975 4455
Q ss_pred eeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEE
Q 005502 142 LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC 221 (693)
Q Consensus 142 ~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl 221 (693)
.+.. ......++++|++..++++....+.|.++|.++.+.. ..+..+... .......+..+
T Consensus 73 ~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v--------------~~I~~~~~~----~~~~~~Rv~aI 133 (369)
T PF02239_consen 73 TIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPV--------------KTIPTGGMP----VDGPESRVAAI 133 (369)
T ss_dssp EEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EE--------------EEEE--EE-----TTTS---EEEE
T ss_pred EEec-CCCcceEEEcCCCCEEEEEecCCCceeEeccccccce--------------eeccccccc----ccccCCCceeE
Confidence 6553 4457889999955555555567999999999886532 111111100 00023456677
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEe-cC
Q 005502 222 DISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SG 300 (693)
Q Consensus 222 ~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs-~D 300 (693)
..+|.++.++++--.-+.|.+.|....+++.. ..+ ..........|+|+++|++++. ..
T Consensus 134 v~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~-----------~~i---------~~g~~~~D~~~dpdgry~~va~~~s 193 (369)
T PF02239_consen 134 VASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV-----------TTI---------KVGRFPHDGGFDPDGRYFLVAANGS 193 (369)
T ss_dssp EE-SSSSEEEEEETTTTEEEEEETTTSSCEEE-----------EEE---------E--TTEEEEEE-TTSSEEEEEEGGG
T ss_pred EecCCCCEEEEEEccCCeEEEEEeccccccce-----------eee---------cccccccccccCcccceeeeccccc
Confidence 77887554555555558888888776533211 111 0111356789999999987765 47
Q ss_pred CcEEEEECCCCCcce
Q 005502 301 EHVYLMDVNHAGGRA 315 (693)
Q Consensus 301 g~V~lwDl~~~~~~~ 315 (693)
+.|-++|..+++...
T Consensus 194 n~i~viD~~~~k~v~ 208 (369)
T PF02239_consen 194 NKIAVIDTKTGKLVA 208 (369)
T ss_dssp TEEEEEETTTTEEEE
T ss_pred ceeEEEeeccceEEE
Confidence 899999999865433
No 281
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.65 E-value=1.3e-07 Score=99.09 Aligned_cols=103 Identities=16% Similarity=0.009 Sum_probs=96.0
Q ss_pred hhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcc
Q 005502 363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR 442 (693)
Q Consensus 363 a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~K 442 (693)
+..+...|.-+...|+ +.+|+..|.++|+..|+. +..|.+++.+|.+. |++..|+..+.+||+++|++..
T Consensus 64 a~~~~~~g~~~~~~g~-~~~A~~~~~~Al~l~P~~------~~a~~~lg~~~~~~---g~~~~A~~~~~~Al~l~P~~~~ 133 (296)
T PRK11189 64 AQLHYERGVLYDSLGL-RALARNDFSQALALRPDM------ADAYNYLGIYLTQA---GNFDAAYEAFDSVLELDPTYNY 133 (296)
T ss_pred HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHC---CCHHHHHHHHHHHHHhCCCCHH
Confidence 5567788888888999 999999999999999887 78999999999995 5599999999999999999999
Q ss_pred hhhhHHHHHHHhccHHHHHHHHHHHcccCCCCc
Q 005502 443 AHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS 475 (693)
Q Consensus 443 A~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~ 475 (693)
|++.+|.++..+|++++|+++++++++++|++.
T Consensus 134 a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 134 AYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999999999999986
No 282
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.61 E-value=6.9e-06 Score=91.03 Aligned_cols=203 Identities=11% Similarity=0.074 Sum_probs=118.2
Q ss_pred cEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCC---CcEEEEEcCCCCCCCCCCCCCCCceeeccCCCC
Q 005502 73 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR 149 (693)
Q Consensus 73 ~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~D---g~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~ 149 (693)
.|.++|...+. ...+ ..+...+.+.+|+|+ ++.|+..+.+ ..|.+|++..+.. ..+......
T Consensus 180 ~l~~~d~~g~~-~~~l-~~~~~~~~~p~wSpD--G~~la~~s~~~~~~~l~~~~l~~g~~-----------~~l~~~~g~ 244 (430)
T PRK00178 180 TLQRSDYDGAR-AVTL-LQSREPILSPRWSPD--GKRIAYVSFEQKRPRIFVQNLDTGRR-----------EQITNFEGL 244 (430)
T ss_pred EEEEECCCCCC-ceEE-ecCCCceeeeeECCC--CCEEEEEEcCCCCCEEEEEECCCCCE-----------EEccCCCCC
Confidence 47788887544 3444 456778999999999 5777665543 3588889875421 112222334
Q ss_pred eEEEEEecCCCcEEEEEeCCC--cEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCC
Q 005502 150 VKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR 227 (693)
Q Consensus 150 V~~l~~sp~~~~~l~Sgs~Dg--~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~ 227 (693)
+....|+|++..++++.+.+| .|.+||+.++... .+.. +........|+|++
T Consensus 245 ~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-----------------------~lt~---~~~~~~~~~~spDg 298 (430)
T PRK00178 245 NGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-----------------------RVTN---HPAIDTEPFWGKDG 298 (430)
T ss_pred cCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-----------------------Eccc---CCCCcCCeEECCCC
Confidence 556899996555555666666 5777788765311 1111 11223456899984
Q ss_pred CcEEEEEeCCC--cEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecC-C--c
Q 005502 228 PHLLLVGGSDA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG-E--H 302 (693)
Q Consensus 228 ~~~Latgs~Dg--~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~D-g--~ 302 (693)
..++.+...++ .|+++|+..++... + .+ .+. ......|+|+|++|+..+.+ + .
T Consensus 299 ~~i~f~s~~~g~~~iy~~d~~~g~~~~-----------l-t~-------~~~---~~~~~~~Spdg~~i~~~~~~~~~~~ 356 (430)
T PRK00178 299 RTLYFTSDRGGKPQIYKVNVNGGRAER-----------V-TF-------VGN---YNARPRLSADGKTLVMVHRQDGNFH 356 (430)
T ss_pred CEEEEEECCCCCceEEEEECCCCCEEE-----------e-ec-------CCC---CccceEECCCCCEEEEEEccCCceE
Confidence 43444443444 46666765543110 0 00 011 13457899999999877653 3 6
Q ss_pred EEEEECCCCCcceEEeecCCCceeEEeccCCCcccccC
Q 005502 303 VYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQP 340 (693)
Q Consensus 303 V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~ 340 (693)
|++||+.++....+. .........|+|+...+.+..
T Consensus 357 l~~~dl~tg~~~~lt--~~~~~~~p~~spdg~~i~~~~ 392 (430)
T PRK00178 357 VAAQDLQRGSVRILT--DTSLDESPSVAPNGTMLIYAT 392 (430)
T ss_pred EEEEECCCCCEEEcc--CCCCCCCceECCCCCEEEEEE
Confidence 899999986533222 222333457888776665543
No 283
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.61 E-value=3e-05 Score=83.29 Aligned_cols=230 Identities=14% Similarity=0.175 Sum_probs=136.4
Q ss_pred cccceEEeccCCCcEEEEEECCCCCEEEEEe-CCCcEEEEECCC-CcEEEE---ec---------cCCCcceEEEEEeeC
Q 005502 39 RLSQERELEGHQGCVNAISWNSKGSLLISGS-DDTHINVWSYSS-RKLLHS---IE---------TGHSANVFCTKFVPE 104 (693)
Q Consensus 39 ~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs-~Dg~I~IWd~~~-~~~~~~---l~---------~~h~~~I~sl~f~p~ 104 (693)
.+..+.+..........++++|++++|+++. .+|.|.++++.. +..... +. ........++.|+|+
T Consensus 75 ~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pd 154 (345)
T PF10282_consen 75 TLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPD 154 (345)
T ss_dssp EEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TT
T ss_pred eeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCC
Confidence 4445555543445566899999999999987 489999999986 332222 10 012345789999999
Q ss_pred CCCCEEEEE-eCCCcEEEEEcCCCCCCCCCCCCCCCceeec-cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCC
Q 005502 105 TSDELVVSG-AGDAEVRLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (693)
Q Consensus 105 ~~~~~l~sg-s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~ 182 (693)
++++++. -....|++|++....+.. .....+. ......+.++|+|++..++++.-.++.|.++++....-
T Consensus 155 --g~~v~v~dlG~D~v~~~~~~~~~~~l------~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g 226 (345)
T PF10282_consen 155 --GRFVYVPDLGADRVYVYDIDDDTGKL------TPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDG 226 (345)
T ss_dssp --SSEEEEEETTTTEEEEEEE-TTS-TE------EEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred --CCEEEEEecCCCEEEEEEEeCCCceE------EEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCC
Confidence 5666554 345689999998643211 1122222 23456889999996666666777789999999873220
Q ss_pred CCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCC-CCCcccccCCCCC
Q 005502 183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPP 261 (693)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~-~~~~~~~~~~~~~ 261 (693)
. ......+-. +............|.++|++..++++......|.+|++... ..+..
T Consensus 227 ~-------~~~~~~~~~--------~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~-------- 283 (345)
T PF10282_consen 227 S-------LTEIQTIST--------LPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTL-------- 283 (345)
T ss_dssp E-------EEEEEEEES--------CETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEE--------
T ss_pred c-------eeEEEEeee--------ccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEE--------
Confidence 0 000011110 00011112367889999985444455556788999999432 11111
Q ss_pred CcccccccCccccCCCCccceEEEEEcCCCCEEEEEec-CCcEEEEECC
Q 005502 262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVN 309 (693)
Q Consensus 262 ~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~-Dg~V~lwDl~ 309 (693)
+..+ .. . +.....++|+|+|++|+++.. ++.|.+|+++
T Consensus 284 --~~~~---~~--~---G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 284 --VQTV---PT--G---GKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp --EEEE---EE--S---SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred --EEEE---eC--C---CCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 1111 00 1 113688999999999998886 6799999875
No 284
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.60 E-value=1.9e-05 Score=84.69 Aligned_cols=261 Identities=11% Similarity=0.107 Sum_probs=151.5
Q ss_pred cccceEEeccCCCcEEEEEECCCCCEEEEEeC----CCcEEEEECCCC--c--EEEEeccCCCcceEEEEEeeCCCCCEE
Q 005502 39 RLSQERELEGHQGCVNAISWNSKGSLLISGSD----DTHINVWSYSSR--K--LLHSIETGHSANVFCTKFVPETSDELV 110 (693)
Q Consensus 39 ~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~----Dg~I~IWd~~~~--~--~~~~l~~~h~~~I~sl~f~p~~~~~~l 110 (693)
.+.....+. -......|+++|++++|.+... ++.|..|.+... + .+... .........++++|+ +++|
T Consensus 26 ~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~-~~~g~~p~~i~~~~~--g~~l 101 (345)
T PF10282_consen 26 TLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSV-PSGGSSPCHIAVDPD--GRFL 101 (345)
T ss_dssp EEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEE-EESSSCEEEEEECTT--SSEE
T ss_pred CceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeee-ccCCCCcEEEEEecC--CCEE
Confidence 344444432 3345667899999999998876 578999988764 2 33333 123345567899998 5776
Q ss_pred EEEe-CCCcEEEEEcCCCCCCCCCCCCCCCceeec----------cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 005502 111 VSGA-GDAEVRLFNLSRFSGRGLDDNAITPSALYQ----------CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (693)
Q Consensus 111 ~sgs-~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~----------~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~ 179 (693)
+++. .+|+|.++++... +... .....+. .-.....++.++|++..++++--....|.+|++..
T Consensus 102 ~vany~~g~v~v~~l~~~-g~l~-----~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~ 175 (345)
T PF10282_consen 102 YVANYGGGSVSVFPLDDD-GSLG-----EVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDD 175 (345)
T ss_dssp EEEETTTTEEEEEEECTT-SEEE-----EEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-T
T ss_pred EEEEccCCeEEEEEccCC-cccc-----eeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence 6665 5899999999863 2110 1111111 12345788999995555555555556899999876
Q ss_pred CCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC-CCcccccCC
Q 005502 180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRM 258 (693)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~-~~~~~~~~~ 258 (693)
.... ... ...+.+. .......+.|+|++..++++.-.++.|.+|++.... .+..
T Consensus 176 ~~~~-------l~~-~~~~~~~------------~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~----- 230 (345)
T PF10282_consen 176 DTGK-------LTP-VDSIKVP------------PGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTE----- 230 (345)
T ss_dssp TS-T-------EEE-EEEEECS------------TTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE-----
T ss_pred CCce-------EEE-eeccccc------------cCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeE-----
Confidence 5411 000 0011111 123567899999865566677778999999988221 1111
Q ss_pred CCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEec-CCcEEEEECCC--CCcceE--EeecCCCceeEEeccCC
Q 005502 259 SPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNH--AGGRAM--RYTVGDASKIMSFTPTL 333 (693)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~-Dg~V~lwDl~~--~~~~~~--~~~~~~~~~~~~~~p~~ 333 (693)
++..........+. .....|.++|||++|+++.. .+.|.+|++.. +....+ ....+..++.+.++|+.
T Consensus 231 -----~~~~~~~~~~~~~~--~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g 303 (345)
T PF10282_consen 231 -----IQTISTLPEGFTGE--NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDG 303 (345)
T ss_dssp -----EEEEESCETTSCSS--SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTS
T ss_pred -----EEEeeecccccccc--CCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCC
Confidence 11110000000111 14788999999999988775 78999999943 232222 22335668999999987
Q ss_pred CcccccCC
Q 005502 334 NGLELQPP 341 (693)
Q Consensus 334 ~g~~~~~~ 341 (693)
+-+.....
T Consensus 304 ~~l~Va~~ 311 (345)
T PF10282_consen 304 RYLYVANQ 311 (345)
T ss_dssp SEEEEEET
T ss_pred CEEEEEec
Confidence 76655443
No 285
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.59 E-value=1.3e-07 Score=66.49 Aligned_cols=38 Identities=39% Similarity=0.834 Sum_probs=36.5
Q ss_pred cceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEE
Q 005502 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS 78 (693)
Q Consensus 41 ~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd 78 (693)
++.++|++|.+.|++|+|+|++.+|+||+.|+.|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57889999999999999999999999999999999997
No 286
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.58 E-value=1.9e-07 Score=101.79 Aligned_cols=163 Identities=16% Similarity=0.279 Sum_probs=121.8
Q ss_pred cEEEEEECCCC--CEEEEEeCCCcEEEEECCC--CcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCC
Q 005502 52 CVNAISWNSKG--SLLISGSDDTHINVWSYSS--RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 127 (693)
Q Consensus 52 ~V~~l~~s~~g--~~LaSgs~Dg~I~IWd~~~--~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~ 127 (693)
.|-...|++.. .+-++......-.||++.. .+.+.-+..+|...|+.+.|+|.. ...+++++.|..|+.||++.+
T Consensus 69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~-pdVlatcsvdt~vh~wd~rSp 147 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQH-PDVLATCSVDTYVHAWDMRSP 147 (1081)
T ss_pred hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCC-CcceeeccccccceeeeccCC
Confidence 46678898853 2334444445678999863 344444457999999999999987 689999999999999999965
Q ss_pred CCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceee
Q 005502 128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (693)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 207 (693)
. .++..+..-......++|+-.+++.+++ +....|++||+|.+..+
T Consensus 148 ~---------~p~ys~~~w~s~asqVkwnyk~p~vlas-shg~~i~vwd~r~gs~p------------------------ 193 (1081)
T KOG0309|consen 148 H---------RPFYSTSSWRSAASQVKWNYKDPNVLAS-SHGNDIFVWDLRKGSTP------------------------ 193 (1081)
T ss_pred C---------cceeeeecccccCceeeecccCcchhhh-ccCCceEEEeccCCCcc------------------------
Confidence 3 4555655556677889999888888854 55578999999987632
Q ss_pred ecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC
Q 005502 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (693)
Q Consensus 208 l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~ 249 (693)
+....++...|+.++|+......+.+++.|++|+.||.....
T Consensus 194 l~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt 235 (1081)
T KOG0309|consen 194 LCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST 235 (1081)
T ss_pred eEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence 112223566788888887666789999999999999987543
No 287
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.58 E-value=1.6e-06 Score=89.37 Aligned_cols=166 Identities=16% Similarity=0.190 Sum_probs=111.8
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcE----EEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCC
Q 005502 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL----LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 126 (693)
Q Consensus 51 ~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~----~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~ 126 (693)
..+..+..++++++||.+..+....++++..... +... .-...-+.+.|... ...+..+..-|.++-+|+-.
T Consensus 63 ~a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~--~v~~~~~ai~~~~~--~~sv~v~dkagD~~~~di~s 138 (390)
T KOG3914|consen 63 LAPALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS--CVPKRPTAISFIRE--DTSVLVADKAGDVYSFDILS 138 (390)
T ss_pred ccccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe--ecccCcceeeeeec--cceEEEEeecCCceeeeeec
Confidence 3455667788899999998888877777765432 2222 12233455666655 24444444444444444332
Q ss_pred CCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCcee
Q 005502 127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206 (693)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 206 (693)
... .+.....+|-+.++.++|+| ++.+|+++..|..||+-........ +
T Consensus 139 ~~~--------~~~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~I------e---------------- 187 (390)
T KOG3914|consen 139 ADS--------GRCEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVI------E---------------- 187 (390)
T ss_pred ccc--------cCcchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccch------h----------------
Confidence 110 12334568999999999999 6688889999999998776543311 0
Q ss_pred eecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccc
Q 005502 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ 255 (693)
Q Consensus 207 ~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~ 255 (693)
...-+|...|..++.-++ ..|++|+.|++|++||+++++.+..+.
T Consensus 188 --sfclGH~eFVS~isl~~~--~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 188 --SFCLGHKEFVSTISLTDN--YLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred --hhccccHhheeeeeeccC--ceeeecCCCCcEEEEecccCCcccccc
Confidence 112267788999999985 579999999999999999999876654
No 288
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.55 E-value=2e-05 Score=95.75 Aligned_cols=245 Identities=12% Similarity=0.139 Sum_probs=137.6
Q ss_pred EEEEEECCCCCEEEEE-eCCCcEEEEECCCCcEEEEecc-CC---------------CcceEEEEEeeCCCCCEEEEEeC
Q 005502 53 VNAISWNSKGSLLISG-SDDTHINVWSYSSRKLLHSIET-GH---------------SANVFCTKFVPETSDELVVSGAG 115 (693)
Q Consensus 53 V~~l~~s~~g~~LaSg-s~Dg~I~IWd~~~~~~~~~l~~-~h---------------~~~I~sl~f~p~~~~~~l~sgs~ 115 (693)
...|++++++..|+++ .....|+++|+.++. +.++.. +. -...+.|+|+|+. +.++++.+.
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~-g~LyVad~~ 703 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVN-EKVYIAMAG 703 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCC-CeEEEEECC
Confidence 5788999888765554 445679999987654 333311 00 1234689999963 678888888
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCC-Cc---eeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCc
Q 005502 116 DAEVRLFNLSRFSGRGLDDNAIT-PS---ALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ 191 (693)
Q Consensus 116 Dg~V~vwdl~~~~~~~~~~~~~~-~~---~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~ 191 (693)
++.|++||............... .. ......-.....|+++|++..++++-+.++.|++||+.++....... +..
T Consensus 704 ~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~g-g~~ 782 (1057)
T PLN02919 704 QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAG-GDP 782 (1057)
T ss_pred CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEe-ccc
Confidence 99999999875321000000000 00 00001123467799999666688888889999999988654110000 000
Q ss_pred ccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCc
Q 005502 192 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 271 (693)
Q Consensus 192 ~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (693)
.....+........ .. ..........++++|+ +.++++-..++.|++||..++........ ..+ .+..+.
T Consensus 783 ~~~~~l~~fG~~dG--~g-~~~~l~~P~Gvavd~d-G~LYVADs~N~rIrviD~~tg~v~tiaG~-G~~-----G~~dG~ 852 (1057)
T PLN02919 783 TFSDNLFKFGDHDG--VG-SEVLLQHPLGVLCAKD-GQIYVADSYNHKIKKLDPATKRVTTLAGT-GKA-----GFKDGK 852 (1057)
T ss_pred ccCcccccccCCCC--ch-hhhhccCCceeeEeCC-CcEEEEECCCCEEEEEECCCCeEEEEecc-CCc-----CCCCCc
Confidence 00000000000000 00 0001112357899997 67888888999999999876542211100 000 000000
Q ss_pred cccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCC
Q 005502 272 LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 272 ~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~ 312 (693)
. ..+.-. ....|+++++|+.+++.+.++.|++||+.++.
T Consensus 853 ~-~~a~l~-~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 853 A-LKAQLS-EPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred c-cccccC-CceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 0 001111 36789999999988888889999999999854
No 289
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.55 E-value=6e-07 Score=79.86 Aligned_cols=108 Identities=14% Similarity=0.010 Sum_probs=92.3
Q ss_pred hHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCC---c
Q 005502 365 MLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS---F 441 (693)
Q Consensus 365 ~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~---~ 441 (693)
.+...|...++.|+ |.+|++.|.+++...|.. ......+.+.+.+|++. |++..|+.-+.+++..+|++ .
T Consensus 4 ~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~p~~~~~~ 76 (119)
T TIGR02795 4 AYYDAALLVLKAGD-YADAIQAFQAFLKKYPKS---TYAPNAHYWLGEAYYAQ---GKYADAAKAFLAVVKKYPKSPKAP 76 (119)
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCCc---cccHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHCCCCCccc
Confidence 45567888899999 999999999999987654 22245678899999996 45999999999999999986 5
Q ss_pred chhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHH
Q 005502 442 RAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAE 479 (693)
Q Consensus 442 KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~ 479 (693)
.+++.+|.++..++++++|...+++++...|++..+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 77 DALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 68999999999999999999999999999999866543
No 290
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=9.9e-07 Score=91.68 Aligned_cols=278 Identities=13% Similarity=0.114 Sum_probs=179.3
Q ss_pred CCcCcccccchhhh-ccccceEEeccCCCcEEEEEECCCCCEEEEEeC-CCcEEEEECCCCcEEEEeccCCCcceEEEEE
Q 005502 24 PDVNHSLQMHSSLV-RRLSQERELEGHQGCVNAISWNSKGSLLISGSD-DTHINVWSYSSRKLLHSIETGHSANVFCTKF 101 (693)
Q Consensus 24 ~~~~~~l~~~~~~i-~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~-Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f 101 (693)
.-.++.++.|...- ...+.++.+..|.+.|.+|+.+.+|.++.|++. |..++++|+.+-..+.-+....-- -.+.|
T Consensus 26 ASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP--g~a~w 103 (558)
T KOG0882|consen 26 ASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP--GFAEW 103 (558)
T ss_pred eecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCC--CceEE
Confidence 44667777777644 677778889999999999999999999999888 999999999876554333211111 12223
Q ss_pred eeCCCC---CEE-EEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 005502 102 VPETSD---ELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDF 177 (693)
Q Consensus 102 ~p~~~~---~~l-~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDl 177 (693)
.... | ..| ++...++.|.|+|-..... +....-.-|..+|..+.+.| -+..++|....|.|.-|..
T Consensus 104 v~sk-Gd~~s~IAVs~~~sg~i~VvD~~~d~~--------q~~~fkklH~sPV~~i~y~q-a~Ds~vSiD~~gmVEyWs~ 173 (558)
T KOG0882|consen 104 VTSK-GDKISLIAVSLFKSGKIFVVDGFGDFC--------QDGYFKKLHFSPVKKIRYNQ-AGDSAVSIDISGMVEYWSA 173 (558)
T ss_pred ecCC-CCeeeeEEeecccCCCcEEECCcCCcC--------ccceecccccCceEEEEeec-cccceeeccccceeEeecC
Confidence 2221 2 133 3444678999999875321 23444456999999999999 5677879888999999987
Q ss_pred CCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccC
Q 005502 178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR 257 (693)
Q Consensus 178 r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~ 257 (693)
...-..+. ..+.|.+... ..+...++.....+++.|+|+ +..+.+-+.|..||+++.++++.+..+...
T Consensus 174 e~~~qfPr--------~~l~~~~K~e--TdLy~f~K~Kt~pts~Efsp~-g~qistl~~DrkVR~F~~KtGklvqeiDE~ 242 (558)
T KOG0882|consen 174 EGPFQFPR--------TNLNFELKHE--TDLYGFPKAKTEPTSFEFSPD-GAQISTLNPDRKVRGFVFKTGKLVQEIDEV 242 (558)
T ss_pred CCcccCcc--------cccccccccc--chhhcccccccCccceEEccc-cCcccccCcccEEEEEEeccchhhhhhhcc
Confidence 64111100 1122222221 123444555667889999998 788999899999999999999876555432
Q ss_pred CCCCCcccc--cccCccc--c--------CCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCce
Q 005502 258 MSPPPCVNY--FCPMHLS--E--------HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASK 325 (693)
Q Consensus 258 ~~~~~~~~~--~~~~~~~--~--------~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~ 325 (693)
.....+... +...|.. . ..|....-+.+.|...|++|+-+.-=| |++.++.+.. ....+......+
T Consensus 243 ~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~-v~ri~gk~e~ir 320 (558)
T KOG0882|consen 243 LTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNT-VVRILGKDEAIR 320 (558)
T ss_pred chhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCe-EEEEeccchhhh
Confidence 211111100 0001110 0 123334567899999999999887643 8889998844 444444444444
Q ss_pred e
Q 005502 326 I 326 (693)
Q Consensus 326 ~ 326 (693)
.
T Consensus 321 ~ 321 (558)
T KOG0882|consen 321 F 321 (558)
T ss_pred h
Confidence 3
No 291
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.51 E-value=1.6e-07 Score=75.27 Aligned_cols=68 Identities=18% Similarity=0.148 Sum_probs=61.6
Q ss_pred hhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCC
Q 005502 362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS 438 (693)
Q Consensus 362 ~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp 438 (693)
.+..+...|..++..++ |.+|+..|+++|+.+|.. +.+|.|+|.||++++. ++..|+.++.+||+++|
T Consensus 2 ~a~~~~~~g~~~~~~~~-~~~A~~~~~~ai~~~p~~------~~~~~~~g~~~~~~~~--~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGD-YEEAIEYFEKAIELDPNN------AEAYYNLGLAYMKLGK--DYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHSTTH------HHHHHHHHHHHHHTTT--HHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhCc--cHHHHHHHHHHHHHcCc
Confidence 45677889999999999 999999999999999877 7899999999999750 49999999999999998
No 292
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=5.8e-05 Score=84.73 Aligned_cols=213 Identities=13% Similarity=0.188 Sum_probs=127.8
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcc-eEEEEEeeCCCCCEEEEEeCCCc-----EEEEEcC
Q 005502 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN-VFCTKFVPETSDELVVSGAGDAE-----VRLFNLS 125 (693)
Q Consensus 52 ~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~-I~sl~f~p~~~~~~l~sgs~Dg~-----V~vwdl~ 125 (693)
.|.| |++.+..+|.|+.+|.|.+.+- +.+.++.+ ..+... |..+..... ..+|++.+.|.. |+||+++
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~f-qa~~~siv~~L~~~~~--~~~L~sv~Ed~~~np~llkiw~le 100 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNS-SFQLIRGF-QAYEQSIVQFLYILNK--QNFLFSVGEDEQGNPVLLKIWDLE 100 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEecc-cceeeehh-eecchhhhhHhhcccC--ceEEEEEeecCCCCceEEEEeccc
Confidence 5655 6788899999999999888873 33444666 566655 444433333 367888777654 8999998
Q ss_pred CCCCCCCCCCCCCCc---eee----ccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEE
Q 005502 126 RFSGRGLDDNAITPS---ALY----QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (693)
Q Consensus 126 ~~~~~~~~~~~~~~~---~~~----~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~ 198 (693)
...+.. +..++ ..+ .....++.+++++. +-..++.|-.+|.|.++.-.-.+- .+....+
T Consensus 101 k~~~n~----sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RD---------rgsr~~~ 166 (933)
T KOG2114|consen 101 KVDKNN----SPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRD---------RGSRQDY 166 (933)
T ss_pred ccCCCC----CcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhc---------cccceee
Confidence 653221 01222 111 11356788899988 578899999999999885321110 0001111
Q ss_pred eccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCC
Q 005502 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (693)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 278 (693)
......+|+.+++..++...+.+ ..-..|.+|.+....|. .++ ..+.
T Consensus 167 ------------~~~~~~pITgL~~~~d~~s~lFv-~Tt~~V~~y~l~gr~p~----------~~~----------ld~~ 213 (933)
T KOG2114|consen 167 ------------SHRGKEPITGLALRSDGKSVLFV-ATTEQVMLYSLSGRTPS----------LKV----------LDNN 213 (933)
T ss_pred ------------eccCCCCceeeEEecCCceeEEE-EecceeEEEEecCCCcc----------eee----------eccC
Confidence 11234689999998874332333 33457889988732211 110 1234
Q ss_pred ccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEee
Q 005502 279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYT 319 (693)
Q Consensus 279 ~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~ 319 (693)
+..+.+.+|++....++++ .+..|++|+... ..+...+.
T Consensus 214 G~~lnCss~~~~t~qfIca-~~e~l~fY~sd~-~~~cfaf~ 252 (933)
T KOG2114|consen 214 GISLNCSSFSDGTYQFICA-GSEFLYFYDSDG-RGPCFAFE 252 (933)
T ss_pred CccceeeecCCCCccEEEe-cCceEEEEcCCC-cceeeeec
Confidence 4467888888766645544 355789998876 33444444
No 293
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.49 E-value=2.4e-07 Score=99.86 Aligned_cols=102 Identities=15% Similarity=0.031 Sum_probs=55.0
Q ss_pred HHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhh
Q 005502 366 LVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHL 445 (693)
Q Consensus 366 lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~KA~~ 445 (693)
....||-+.+.+. |..|+.+|.+|+...|.. ++.|+|.|-.|..+ |+...||+-..+||+++|+...||.
T Consensus 255 YiNLGnV~ke~~~-~d~Avs~Y~rAl~lrpn~------A~a~gNla~iYyeq---G~ldlAI~~Ykral~~~P~F~~Ay~ 324 (966)
T KOG4626|consen 255 YINLGNVYKEARI-FDRAVSCYLRALNLRPNH------AVAHGNLACIYYEQ---GLLDLAIDTYKRALELQPNFPDAYN 324 (966)
T ss_pred HhhHHHHHHHHhc-chHHHHHHHHHHhcCCcc------hhhccceEEEEecc---ccHHHHHHHHHHHHhcCCCchHHHh
Confidence 3344555555555 555555555555555544 45555555555553 3355555555555555555555555
Q ss_pred hHHHHHHHhccHHHHHHHHHHHcccCCCCchh
Q 005502 446 YMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 477 (693)
Q Consensus 446 r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~ 477 (693)
.+|.||-.+|+..||..+|++++.+.|..+.+
T Consensus 325 NlanALkd~G~V~ea~~cYnkaL~l~p~hada 356 (966)
T KOG4626|consen 325 NLANALKDKGSVTEAVDCYNKALRLCPNHADA 356 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhCCccHHH
Confidence 55555555555555555555555555554443
No 294
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.48 E-value=1.5e-05 Score=88.67 Aligned_cols=201 Identities=7% Similarity=0.047 Sum_probs=113.4
Q ss_pred cEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeC-CC--cEEEEEcCCCCCCCCCCCCCCCceeeccCCCC
Q 005502 73 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-DA--EVRLFNLSRFSGRGLDDNAITPSALYQCHTRR 149 (693)
Q Consensus 73 ~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~-Dg--~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~ 149 (693)
.|.++|...... +.+ ..+...+.+..|+|+ |+.|+..+. ++ .|.+||+..... ..+..+ ...
T Consensus 199 ~l~i~d~dG~~~-~~l-~~~~~~~~~p~wSPD--G~~La~~s~~~g~~~L~~~dl~tg~~--------~~lt~~---~g~ 263 (448)
T PRK04792 199 QLMIADYDGYNE-QML-LRSPEPLMSPAWSPD--GRKLAYVSFENRKAEIFVQDIYTQVR--------EKVTSF---PGI 263 (448)
T ss_pred EEEEEeCCCCCc-eEe-ecCCCcccCceECCC--CCEEEEEEecCCCcEEEEEECCCCCe--------EEecCC---CCC
Confidence 577778765443 334 456778999999999 576765543 33 578888875321 112222 223
Q ss_pred eEEEEEecCCCcEEEEEeCCCc--EEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCC
Q 005502 150 VKKLAVEVGNPHVVWSASEDGT--LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR 227 (693)
Q Consensus 150 V~~l~~sp~~~~~l~Sgs~Dg~--V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~ 227 (693)
....+|+|++..++++.+.+|. |.+||+.+++.. .+.. +.......+|+|++
T Consensus 264 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-----------------------~lt~---~~~~~~~p~wSpDG 317 (448)
T PRK04792 264 NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-----------------------RITR---HRAIDTEPSWHPDG 317 (448)
T ss_pred cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-----------------------ECcc---CCCCccceEECCCC
Confidence 4468999966556666777775 666677654311 1111 11234567899984
Q ss_pred CcEEE-EEeCCCc--EEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEec-CC--
Q 005502 228 PHLLL-VGGSDAF--ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GE-- 301 (693)
Q Consensus 228 ~~~La-tgs~Dg~--I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~-Dg-- 301 (693)
..|+ +...++. |+++|+.+++... + ++ .+. .....+|+|||++|+..+. ++
T Consensus 318 -~~I~f~s~~~g~~~Iy~~dl~~g~~~~-----------L-t~-------~g~---~~~~~~~SpDG~~l~~~~~~~g~~ 374 (448)
T PRK04792 318 -KSLIFTSERGGKPQIYRVNLASGKVSR-----------L-TF-------EGE---QNLGGSITPDGRSMIMVNRTNGKF 374 (448)
T ss_pred -CEEEEEECCCCCceEEEEECCCCCEEE-----------E-ec-------CCC---CCcCeeECCCCCEEEEEEecCCce
Confidence 5554 4444444 5556665443110 0 00 111 1235689999999887655 33
Q ss_pred cEEEEECCCCCcceEEeecCCCceeEEeccCCCccccc
Q 005502 302 HVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQ 339 (693)
Q Consensus 302 ~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~ 339 (693)
.|+++|+.++.... .. .........|+|+...+.+.
T Consensus 375 ~I~~~dl~~g~~~~-lt-~~~~d~~ps~spdG~~I~~~ 410 (448)
T PRK04792 375 NIARQDLETGAMQV-LT-STRLDESPSVAPNGTMVIYS 410 (448)
T ss_pred EEEEEECCCCCeEE-cc-CCCCCCCceECCCCCEEEEE
Confidence 57778888764322 22 12223344677776665543
No 295
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.48 E-value=7.5e-07 Score=77.93 Aligned_cols=106 Identities=20% Similarity=0.037 Sum_probs=91.1
Q ss_pred CcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCC
Q 005502 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS 438 (693)
Q Consensus 359 ~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp 438 (693)
..+....+..+|...-+.|+ +..|++.|+++|..+|.. +..|.|||.+|--. ||..+|+.|.++||+|..
T Consensus 39 ~~e~S~~LEl~~valaE~g~-Ld~AlE~F~qal~l~P~r------aSayNNRAQa~RLq---~~~e~ALdDLn~AleLag 108 (175)
T KOG4555|consen 39 AIKASRELELKAIALAEAGD-LDGALELFGQALCLAPER------ASAYNNRAQALRLQ---GDDEEALDDLNKALELAG 108 (175)
T ss_pred HHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHhcccc------hHhhccHHHHHHHc---CChHHHHHHHHHHHHhcC
Confidence 34455677778888889999 999999999999999887 88999999999663 669999999999999976
Q ss_pred CCcc----hhhhHHHHHHHhccHHHHHHHHHHHcccCCCC
Q 005502 439 SSFR----AHLYMSEALEQLCKYKEALDFAIAAQCLDPSN 474 (693)
Q Consensus 439 ~~~K----A~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~ 474 (693)
.-.| ||..|+..+..+|+-+.|..+|..+.++-...
T Consensus 109 ~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 109 DQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred ccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHH
Confidence 5544 78899999999999999999999988776554
No 296
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.47 E-value=5.4e-07 Score=106.84 Aligned_cols=152 Identities=17% Similarity=0.248 Sum_probs=118.0
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEe---CCCcEEEEEcCCC
Q 005502 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA---GDAEVRLFNLSRF 127 (693)
Q Consensus 51 ~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs---~Dg~V~vwdl~~~ 127 (693)
..|+.+.|+.+|+.+..+..||.+.+|... .+..... ..|.....++.|.. ..+++++ .++.+.+||...+
T Consensus 2252 s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~-qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~ 2325 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSW-QCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLP 2325 (2439)
T ss_pred chhhhhhhcccCCceeeeccCCceeecccC-Ccceecc-ccCCccccceeeee----hhhhccccCCCCCcccchhcccC
Confidence 677888899999999999999999999987 4444444 57888889999986 3677765 4688999998764
Q ss_pred CCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceee
Q 005502 128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (693)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 207 (693)
... ..+. .+|...++++++.| ...+|+|||.+|.|++||+|..+..
T Consensus 2326 ~~~-------s~v~--~~H~~gaT~l~~~P-~~qllisggr~G~v~l~D~rqrql~------------------------ 2371 (2439)
T KOG1064|consen 2326 PMN-------SLVH--TCHDGGATVLAYAP-KHQLLISGGRKGEVCLFDIRQRQLR------------------------ 2371 (2439)
T ss_pred ccc-------ceee--eecCCCceEEEEcC-cceEEEecCCcCcEEEeehHHHHHH------------------------
Confidence 321 1233 78999999999999 6789999999999999999986522
Q ss_pred ecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCccc
Q 005502 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC 254 (693)
Q Consensus 208 l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~ 254 (693)
|.... ++. ..+|++|+..|.|+||++.....+.++
T Consensus 2372 ------h~~~~----~~~--~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2372 ------HTFQA----LDT--REYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred ------HHhhh----hhh--hheeeccCcccceEEEEccccchhhcC
Confidence 11111 332 469999999999999999876555444
No 297
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.45 E-value=4.1e-06 Score=93.98 Aligned_cols=186 Identities=16% Similarity=0.210 Sum_probs=135.8
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCc
Q 005502 61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS 140 (693)
Q Consensus 61 ~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~ 140 (693)
++..++-|+-...+..+|+.+.+..+... -..+.|+-++.+ ++++.+|...|+|.+-|.+.. +++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~-v~a~~v~imR~N----nr~lf~G~t~G~V~LrD~~s~----------~~i 210 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTN-VSASGVTIMRYN----NRNLFCGDTRGTVFLRDPNSF----------ETI 210 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeee-ccCCceEEEEec----CcEEEeecccceEEeecCCcC----------cee
Confidence 45677778877889999998877666552 223346666553 579999999999999999865 779
Q ss_pred eeeccCCCCeEEEEEecCCCcEEEEEeC---------CCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCC
Q 005502 141 ALYQCHTRRVKKLAVEVGNPHVVWSASE---------DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP 211 (693)
Q Consensus 141 ~~~~~h~~~V~~l~~sp~~~~~l~Sgs~---------Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 211 (693)
+++.+|++.|.++.+ .+++|+|+|. |.-|++||+|..+..+++...
T Consensus 211 ht~~aHs~siSDfDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~---------------------- 265 (1118)
T KOG1275|consen 211 HTFDAHSGSISDFDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP---------------------- 265 (1118)
T ss_pred eeeeccccceeeeec---cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc----------------------
Confidence 999999999999887 4678889885 556899999987654332211
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCC
Q 005502 212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG 291 (693)
Q Consensus 212 ~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg 291 (693)
..-.-+.|+|.=...+++++..|...+-|...... |+.-+.++.| .+..++.+.+|++|
T Consensus 266 ----~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN---------P~~~~~~v~p--------~~s~i~~fDiSsn~ 324 (1118)
T KOG1275|consen 266 ----YGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN---------PPAGVKMVNP--------NGSGISAFDISSNG 324 (1118)
T ss_pred ----cCchhhhhcccccceEEEEecccceeeccccccCC---------CccceeEEcc--------CCCcceeEEecCCC
Confidence 01133567887778899999999999998554321 1111222211 11138999999999
Q ss_pred CEEEEEecCCcEEEEE
Q 005502 292 EEVLLSYSGEHVYLMD 307 (693)
Q Consensus 292 ~~L~sgs~Dg~V~lwD 307 (693)
..|+.|..+|.|.+|-
T Consensus 325 ~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 325 DALAFGDHEGHVNLWA 340 (1118)
T ss_pred ceEEEecccCcEeeec
Confidence 9999999999999998
No 298
>PRK15331 chaperone protein SicA; Provisional
Probab=98.44 E-value=2e-06 Score=79.71 Aligned_cols=123 Identities=11% Similarity=-0.053 Sum_probs=100.8
Q ss_pred cccccccccccCcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHH
Q 005502 348 TNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAI 427 (693)
Q Consensus 348 ~~~~~~~~~~~~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~ 427 (693)
.|...........+..+.+-..|-.++..|+ |.+|...|.-..-+.+.+ +.++...|+|+..++. |..|+
T Consensus 22 ~G~tlk~l~gis~~~le~iY~~Ay~~y~~Gk-~~eA~~~F~~L~~~d~~n------~~Y~~GLaa~~Q~~k~---y~~Ai 91 (165)
T PRK15331 22 EGATLKDVHGIPQDMMDGLYAHAYEFYNQGR-LDEAETFFRFLCIYDFYN------PDYTMGLAAVCQLKKQ---FQKAC 91 (165)
T ss_pred CCCCHHHHhCCCHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCcCc------HHHHHHHHHHHHHHHH---HHHHH
Confidence 3333333333455667888889999999999 999999998777766655 6788899999988655 99999
Q ss_pred HhHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHH
Q 005502 428 RDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKV 481 (693)
Q Consensus 428 ~Dc~~Al~ldp~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~ 481 (693)
.-...|.-++++++.++|+.|+|++.||+..+|+.+|..++. .|.+..+++..
T Consensus 92 ~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A 144 (165)
T PRK15331 92 DLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKA 144 (165)
T ss_pred HHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHH
Confidence 999999999999999999999999999999999999999988 46665544333
No 299
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.44 E-value=4.1e-05 Score=76.17 Aligned_cols=196 Identities=12% Similarity=0.097 Sum_probs=118.0
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCC------CcceEEEEEeeCCCC----CEEEEEeCCCcEEE
Q 005502 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGH------SANVFCTKFVPETSD----ELVVSGAGDAEVRL 121 (693)
Q Consensus 52 ~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h------~~~I~sl~f~p~~~~----~~l~sgs~Dg~V~v 121 (693)
.=..++|+||+.+||.+...|+|+++|+.. ..+..+..++ ...|..+.|.+.... ..|+.-..+|.++-
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 456799999999999999999999999874 4444443222 356778888765211 24566677888888
Q ss_pred EEcCCCCCCCCCCCCCCCcee--ecc-CCCCeEEEEEecCCCcEEEEEeC-CC----------cEEEEeCCCCCCCCCCC
Q 005502 122 FNLSRFSGRGLDDNAITPSAL--YQC-HTRRVKKLAVEVGNPHVVWSASE-DG----------TLRQHDFRQGSSCPPAG 187 (693)
Q Consensus 122 wdl~~~~~~~~~~~~~~~~~~--~~~-h~~~V~~l~~sp~~~~~l~Sgs~-Dg----------~V~iwDlr~~~~~~~~~ 187 (693)
|-+..+.... ...... +.. +...|.++.++| .-++|+.||. .. -+.-|-+-...+--...
T Consensus 124 y~vs~gt~q~-----y~e~hsfsf~~~yp~Gi~~~vy~p-~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v 197 (282)
T PF15492_consen 124 YLVSVGTNQG-----YQENHSFSFSSHYPHGINSAVYHP-KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQV 197 (282)
T ss_pred EEEEcccCCc-----ceeeEEEEecccCCCceeEEEEcC-CCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEc
Confidence 8774321111 122222 222 467899999999 4456666553 22 24455544433210000
Q ss_pred CCCccc------ceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccC
Q 005502 188 SSHQEC------RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR 257 (693)
Q Consensus 188 ~~~~~~------~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~ 257 (693)
....+. +.-++.+.+ .............|..|.+||+ +.+||+...+|.|.+|++.++....++...
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~--~~~fs~~~~~~d~i~kmSlSPd-g~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 198 TSSEDDITASSKRRGLLRIPS--FKFFSRQGQEQDGIFKMSLSPD-GSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred cccCccccccccccceeeccc--eeeeeccccCCCceEEEEECCC-CCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 000000 001111111 0111111234567999999997 789999999999999999998877766543
No 300
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.43 E-value=1.6e-05 Score=77.82 Aligned_cols=199 Identities=13% Similarity=0.015 Sum_probs=132.1
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEeccCCCc--ceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCce
Q 005502 64 LLISGSDDTHINVWSYSSRKLLHSIETGHSA--NVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA 141 (693)
Q Consensus 64 ~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~--~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~ 141 (693)
.+..++.|.++++.++.-+..-..+ |.. .++++.++|+ +.++++.+....|..|.+...+... +.
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~---h~~~~~~ns~~~snd--~~~~~~Vgds~~Vf~y~id~~sey~--------~~ 196 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAV---HNQNLTQNSLHYSND--PSWGSSVGDSRRVFRYAIDDESEYI--------EN 196 (344)
T ss_pred ceeeccCCcceeEEEEecCccccee---eccccceeeeEEcCC--CceEEEecCCCcceEEEeCCcccee--------ee
Confidence 4556677788888777643222222 333 3889999998 6999999999999999998654322 22
Q ss_pred -eeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEE
Q 005502 142 -LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS 220 (693)
Q Consensus 142 -~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~s 220 (693)
.....++.=.+..|+. ....||++..||++.|||+|....+... .-...+.|...+..
T Consensus 197 ~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm~~--------------------~sstrp~hnGa~R~ 255 (344)
T KOG4532|consen 197 IYEAPTSDHGFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMATPMAE--------------------ISSTRPHHNGAFRV 255 (344)
T ss_pred eEecccCCCceeeeecc-CcceEEEEecCCcEEEEEecccccchhh--------------------hcccCCCCCCceEE
Confidence 2222334456678887 5679999999999999999986533111 11223457889999
Q ss_pred EEEcCCCC-cEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEec
Q 005502 221 CDISSTRP-HLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS 299 (693)
Q Consensus 221 l~~sp~~~-~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~ 299 (693)
+.|+|-+. .+|...-.-+.+.+.|+|++.....+.. ..-....|....|..-.|+.++.-+.+...
T Consensus 256 c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i-------------~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e 322 (344)
T KOG4532|consen 256 CRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVI-------------PDDVERKHNTQHIFGTNFNNENESNDVKNE 322 (344)
T ss_pred EEecCCCcceEEEEecCcceEEEEEcccCceeeEEec-------------CccccccccccccccccccCCCcccccccc
Confidence 99998433 3556666678999999999865433221 111122344445888889988887776665
Q ss_pred CCcEEEEECCC
Q 005502 300 GEHVYLMDVNH 310 (693)
Q Consensus 300 Dg~V~lwDl~~ 310 (693)
+ +++-|++.+
T Consensus 323 ~-~~ae~ni~s 332 (344)
T KOG4532|consen 323 L-QGAEYNILS 332 (344)
T ss_pred h-hhheeeccc
Confidence 4 566777776
No 301
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.40 E-value=1.1e-06 Score=85.49 Aligned_cols=167 Identities=20% Similarity=0.216 Sum_probs=104.7
Q ss_pred CCCCEEEEEeC-----CCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCC
Q 005502 60 SKGSLLISGSD-----DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD 134 (693)
Q Consensus 60 ~~g~~LaSgs~-----Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 134 (693)
..++++.++.- -+..++|++...+.+..-.. ....|.+++-+|.. .+++++|+.||.|-+||.+...
T Consensus 142 ~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~-~~~~v~~l~~hp~q-q~~v~cgt~dg~~~l~d~rn~~------ 213 (319)
T KOG4714|consen 142 RHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK-ALDAVTALCSHPAQ-QHLVCCGTDDGIVGLWDARNVA------ 213 (319)
T ss_pred ecccEEecCCcceEeeccceeeeccccccccccccc-ccccchhhhCCccc-ccEEEEecCCCeEEEEEccccc------
Confidence 34555555421 23455666654332221111 22349999999986 6899999999999999999753
Q ss_pred CCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEecc---CCceeeecCC
Q 005502 135 NAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR---CGAKRSLADP 211 (693)
Q Consensus 135 ~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~l~~~ 211 (693)
.+...++.|+..+..+-|+|.+|..|+++++||.+.-||..+.-. ....+......|-.. ......-...
T Consensus 214 ---~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l----~i~~~~s~~s~WLsgD~v~s~i~i~~ll 286 (319)
T KOG4714|consen 214 ---MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFL----SISNQASVISSWLSGDPVKSRIEITSLL 286 (319)
T ss_pred ---chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceE----EecCccccccccccCCcccceEeeeccc
Confidence 568888999999999999999999999999999999999874210 011111111111000 0000001112
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 005502 212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD 244 (693)
Q Consensus 212 ~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD 244 (693)
+.....|+++.+. +..|++|+.-+-|++++
T Consensus 287 ~~~~~SinsfDV~---g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 287 PSRSLSINSFDVL---GPCLVCGTDAEAIYLTR 316 (319)
T ss_pred cccceeeeeeecc---CceEEeccccceEEEec
Confidence 2233455666555 34799999888898875
No 302
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.40 E-value=4.5e-06 Score=91.01 Aligned_cols=245 Identities=13% Similarity=0.129 Sum_probs=152.7
Q ss_pred hhccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEe-ccCCCcceEEEEEeeCCCCCEEEEEe
Q 005502 36 LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI-ETGHSANVFCTKFVPETSDELVVSGA 114 (693)
Q Consensus 36 ~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l-~~~h~~~I~sl~f~p~~~~~~l~sgs 114 (693)
....+...++|+||++.|.-+.|+.+.+.|-|...+|.|.||=+..+.....+ .....+.|.+++|+.+ |..++..-
T Consensus 57 a~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~d--G~kIcIvY 134 (1189)
T KOG2041|consen 57 AASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLD--GTKICIVY 134 (1189)
T ss_pred cccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCC--CcEEEEEE
Confidence 45677788899999999999999999999999999999999999887655433 2345678999999988 78999999
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccc
Q 005502 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (693)
Q Consensus 115 ~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~ 194 (693)
.||.|.|=.+..+. .. -+.++ ..-...+.|++ +...+..+-.+|.+++||....-.. ..+..|.
T Consensus 135 eDGavIVGsvdGNR--Iw-------gKeLk--g~~l~hv~ws~-D~~~~Lf~~ange~hlydnqgnF~~----Kl~~~c~ 198 (1189)
T KOG2041|consen 135 EDGAVIVGSVDGNR--IW-------GKELK--GQLLAHVLWSE-DLEQALFKKANGETHLYDNQGNFER----KLEKDCE 198 (1189)
T ss_pred ccCCEEEEeeccce--ec-------chhcc--hheccceeecc-cHHHHHhhhcCCcEEEecccccHHH----hhhhceE
Confidence 99999887665321 00 01111 12234678999 4455667778899999997643211 1112221
Q ss_pred eEEEeccCCceeeecCCCCCccceEEEEEc--------CCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccc
Q 005502 195 NILLDLRCGAKRSLADPPKQTLSLKSCDIS--------STRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266 (693)
Q Consensus 195 ~~l~~~~~~~~~~l~~~~~~~~~v~sl~~s--------p~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~ 266 (693)
.......++ ....|..+.|. |+. -.|+++-..|.+.|..-.+.. .+.+
T Consensus 199 Vn~tg~~s~----------~~~kia~i~w~~g~~~~v~pdr-P~lavcy~nGr~QiMR~eND~-----------~Pvv-- 254 (1189)
T KOG2041|consen 199 VNGTGIFSN----------FPTKIAEIEWNTGPYQPVPPDR-PRLAVCYANGRMQIMRSENDP-----------EPVV-- 254 (1189)
T ss_pred EeeeeeecC----------CCccccceeeccCccccCCCCC-CEEEEEEcCceehhhhhcCCC-----------CCeE--
Confidence 111111111 11224444443 454 378888888888765332211 0111
Q ss_pred cccCccccCCCCccceEEEEEcCCCCEEEEEecCC---------cEEEEECCCCCcceEEeecCCCceeEEeccC
Q 005502 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE---------HVYLMDVNHAGGRAMRYTVGDASKIMSFTPT 332 (693)
Q Consensus 267 ~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg---------~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~ 332 (693)
+ ..+-.|..+.|+|+|..|++++.+. .|.+|.... .....+-.++.-+..++|-..
T Consensus 255 ~---------dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G-~i~gtlkvpg~~It~lsWEg~ 319 (1189)
T KOG2041|consen 255 V---------DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYG-HIVGTLKVPGSCITGLSWEGT 319 (1189)
T ss_pred E---------ecccEeecceecCCCcEEEEccCcccccCccccceEEEeccch-hheEEEecCCceeeeeEEcCC
Confidence 0 1112588899999999999998742 455554333 223333334444555556544
No 303
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.39 E-value=3.1e-07 Score=101.92 Aligned_cols=233 Identities=17% Similarity=0.209 Sum_probs=154.2
Q ss_pred CcchhhhhcccccCCCC-CcCcccccchhhhccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEE
Q 005502 8 DGSIYDMLDTRHTDTRP-DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH 86 (693)
Q Consensus 8 ~~~~~~~l~~r~~~~~~-~~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~ 86 (693)
.-|++..+-.|++-+.. .+.....-.....++++..++++.|+...+|++|+-..+.|+.|+-.|.|+++++.+|....
T Consensus 1058 p~N~t~Rl~~rel~~~y~gV~g~~~dr~~IFSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~ 1137 (1516)
T KOG1832|consen 1058 PLNMTGRLGTRELQSFYSGVHGNRRDRQFIFSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE 1137 (1516)
T ss_pred chhhhhcccchhhcCcccccccCcccchhhHhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc
Confidence 44666666666654432 23333333334558899999999999999999999999999999999999999999999888
Q ss_pred EeccCCCcceEEEEEeeCCCCCEEEEEeCCC--cEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEE
Q 005502 87 SIETGHSANVFCTKFVPETSDELVVSGAGDA--EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW 164 (693)
Q Consensus 87 ~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg--~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~ 164 (693)
.. ..|.+.|+-|.=+.+ |.++++.+.-. -..+|++... + .+.++|. .-.++.|+.. ...-+
T Consensus 1138 s~-ncH~SavT~vePs~d--gs~~Ltsss~S~PlsaLW~~~s~-~--------~~~Hsf~----ed~~vkFsn~-~q~r~ 1200 (1516)
T KOG1832|consen 1138 SV-NCHQSAVTLVEPSVD--GSTQLTSSSSSSPLSALWDASST-G--------GPRHSFD----EDKAVKFSNS-LQFRA 1200 (1516)
T ss_pred cc-cccccccccccccCC--cceeeeeccccCchHHHhccccc-c--------Ccccccc----ccceeehhhh-HHHHH
Confidence 88 799999999987776 56666555433 4679999852 1 3344443 3456778763 22233
Q ss_pred EEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 005502 165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD 244 (693)
Q Consensus 165 Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD 244 (693)
.|..-..+.+||+.+..++.....+ . ......-++..|+|.+ .+++ +||. +||
T Consensus 1201 ~gt~~d~a~~YDvqT~~~l~tylt~----------~-----------~~~~y~~n~a~FsP~D-~LIl---ndGv--LWD 1253 (1516)
T KOG1832|consen 1201 LGTEADDALLYDVQTCSPLQTYLTD----------T-----------VTSSYSNNLAHFSPCD-TLIL---NDGV--LWD 1253 (1516)
T ss_pred hcccccceEEEecccCcHHHHhcCc----------c-----------hhhhhhccccccCCCc-ceEe---eCce--eee
Confidence 4444467889999998755211110 0 0111223678899974 4443 4553 799
Q ss_pred cCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCC
Q 005502 245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (693)
Q Consensus 245 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~ 311 (693)
+|..+.+..|.. | . --..=.|+|+|..++..+. |||+++-
T Consensus 1254 vR~~~aIh~FD~----------f---t---------~~~~G~FHP~g~eVIINSE-----IwD~RTF 1293 (1516)
T KOG1832|consen 1254 VRIPEAIHRFDQ----------F---T---------DYGGGGFHPSGNEVIINSE-----IWDMRTF 1293 (1516)
T ss_pred eccHHHHhhhhh----------h---e---------ecccccccCCCceEEeech-----hhhhHHH
Confidence 997654433311 1 0 0112369999999998874 8999883
No 304
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.39 E-value=0.00016 Score=76.51 Aligned_cols=239 Identities=13% Similarity=0.135 Sum_probs=131.6
Q ss_pred ccccceEEeccCCCcEEEEEECCCCCEEEEEeC----------CCcEEEEECCCCcEEEEeccCCC------cceEEEEE
Q 005502 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSD----------DTHINVWSYSSRKLLHSIETGHS------ANVFCTKF 101 (693)
Q Consensus 38 ~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~----------Dg~I~IWd~~~~~~~~~l~~~h~------~~I~sl~f 101 (693)
..++.+.++..-..+- .+ ++|+|+.|.++.. +..|.|||+.+.+.+..+..+-. .....+++
T Consensus 35 ~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~l 112 (352)
T TIGR02658 35 EAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSL 112 (352)
T ss_pred CCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEE
Confidence 3455556665322222 24 9999998887755 77899999999999988853311 12336788
Q ss_pred eeCCCCCEEEEEe-C-CCcEEEEEcCCCCCCCCCCCCCCCceeecc---------C-------------CCCeEEE----
Q 005502 102 VPETSDELVVSGA-G-DAEVRLFNLSRFSGRGLDDNAITPSALYQC---------H-------------TRRVKKL---- 153 (693)
Q Consensus 102 ~p~~~~~~l~sgs-~-Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~---------h-------------~~~V~~l---- 153 (693)
+|+ |++|+... . +..|-+.|+....-...-... .+...+.. - ...+...
T Consensus 113 s~d--gk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp-~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~ 189 (352)
T TIGR02658 113 TPD--NKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP-DCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFH 189 (352)
T ss_pred CCC--CCEEEEecCCCCCEEEEEECCCCcEEEEEeCC-CCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeec
Confidence 998 67777655 3 789999999854211000000 00000000 0 0000110
Q ss_pred ----------EEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEE
Q 005502 154 ----------AVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI 223 (693)
Q Consensus 154 ----------~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~ 223 (693)
.|.+.++.+++...+ |+|.+.|+....... ...|.+-+-... ...-....+.-+++
T Consensus 190 ~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~----------~~~~~~~~~~~~---~~~wrP~g~q~ia~ 255 (352)
T TIGR02658 190 PEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKF----------LPAIEAFTEAEK---ADGWRPGGWQQVAY 255 (352)
T ss_pred CCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCccee----------cceeeecccccc---ccccCCCcceeEEE
Confidence 123324455555555 777777754432110 000100000000 00001222334999
Q ss_pred cCCCCcEEEEEe---------CCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCC-E
Q 005502 224 SSTRPHLLLVGG---------SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-E 293 (693)
Q Consensus 224 sp~~~~~Latgs---------~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~-~ 293 (693)
+|+++.+++... ..+.|.++|..+.+.+..+. .+..+..|+|+|||+ +
T Consensus 256 ~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~----------------------vG~~~~~iavS~Dgkp~ 313 (352)
T TIGR02658 256 HRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE----------------------LGHEIDSINVSQDAKPL 313 (352)
T ss_pred cCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe----------------------CCCceeeEEECCCCCeE
Confidence 998554444331 22579999998876544331 111478999999999 8
Q ss_pred EEEEe-cCCcEEEEECCCCCcceEE
Q 005502 294 VLLSY-SGEHVYLMDVNHAGGRAMR 317 (693)
Q Consensus 294 L~sgs-~Dg~V~lwDl~~~~~~~~~ 317 (693)
|++.. .++.|.++|+.+++.....
T Consensus 314 lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 314 LYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEeCCCCCcEEEEECcCCeEEeee
Confidence 88666 4889999999996544443
No 305
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.38 E-value=9.8e-05 Score=89.92 Aligned_cols=240 Identities=14% Similarity=0.121 Sum_probs=132.8
Q ss_pred EEEEECC-CCCEEEEEeCCCcEEEEECCCCcEEEEecc-CC------------CcceEEEEEeeCCCCCEE-EEEeCCCc
Q 005502 54 NAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIET-GH------------SANVFCTKFVPETSDELV-VSGAGDAE 118 (693)
Q Consensus 54 ~~l~~s~-~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~-~h------------~~~I~sl~f~p~~~~~~l-~sgs~Dg~ 118 (693)
..+++++ ++.++++-+.+++|.+||.. +..+..+.. +. -.....|++.++ ++.| ++-...+.
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~--gn~LYVaDt~n~~ 647 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAK--KNLLYVADTENHA 647 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCC--CCEEEEEeCCCce
Confidence 3578876 46677787888999999985 455544421 11 123578999987 4544 44445678
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeecc-------CCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCc
Q 005502 119 VRLFNLSRFSGRGLDDNAITPSALYQC-------HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ 191 (693)
Q Consensus 119 V~vwdl~~~~~~~~~~~~~~~~~~~~~-------h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~ 191 (693)
|+++|+............ .....+.+ .-.....|+++|.++.++++.+.++.|++||...+...
T Consensus 648 Ir~id~~~~~V~tlag~G-~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-------- 718 (1057)
T PLN02919 648 LREIDFVNETVRTLAGNG-TKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-------- 718 (1057)
T ss_pred EEEEecCCCEEEEEeccC-cccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE--------
Confidence 999998643110000000 00000000 01234689999977788888889999999998765311
Q ss_pred ccceEEEeccCCceeeec---CCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccc
Q 005502 192 ECRNILLDLRCGAKRSLA---DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFC 268 (693)
Q Consensus 192 ~~~~~l~~~~~~~~~~l~---~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~ 268 (693)
.+. ..+...... ...........|+++|++..++++-+.++.|++||+.++............+..+..+-
T Consensus 719 -----~~~-G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG 792 (1057)
T PLN02919 719 -----VFS-GDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFG 792 (1057)
T ss_pred -----EEe-cCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCccccccc
Confidence 000 000000000 00001124567999998555677777789999999886532100000000000000000
Q ss_pred cCc-cccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCC
Q 005502 269 PMH-LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 269 ~~~-~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~ 312 (693)
... ......- .....++|+++|..+++-..++.|++||..++.
T Consensus 793 ~~dG~g~~~~l-~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~ 836 (1057)
T PLN02919 793 DHDGVGSEVLL-QHPLGVLCAKDGQIYVADSYNHKIKKLDPATKR 836 (1057)
T ss_pred CCCCchhhhhc-cCCceeeEeCCCcEEEEECCCCEEEEEECCCCe
Confidence 000 0000000 124689999999988888889999999998854
No 306
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.36 E-value=2.8e-06 Score=70.66 Aligned_cols=98 Identities=24% Similarity=0.213 Sum_probs=86.7
Q ss_pred HHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhh
Q 005502 366 LVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHL 445 (693)
Q Consensus 366 lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~KA~~ 445 (693)
+...|...+..|+ |..|+..+.++++..|.. ...+.++|.+|...+ ++.+|+..+.+++++.|.+..+++
T Consensus 3 ~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~ 72 (100)
T cd00189 3 LLNLGNLYYKLGD-YDEALEYYEKALELDPDN------ADAYYNLAAAYYKLG---KYEEALEDYEKALELDPDNAKAYY 72 (100)
T ss_pred HHHHHHHHHHHhc-HHHHHHHHHHHHhcCCcc------HHHHHHHHHHHHHHH---HHHHHHHHHHHHHhCCCcchhHHH
Confidence 3456777788899 999999999999988765 467889999999864 499999999999999999999999
Q ss_pred hHHHHHHHhccHHHHHHHHHHHcccCCC
Q 005502 446 YMSEALEQLCKYKEALDFAIAAQCLDPS 473 (693)
Q Consensus 446 r~a~al~~l~~~~eA~~~~~~~~~~~p~ 473 (693)
.++.++..++++++|.+.+..++...|.
T Consensus 73 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 73 NLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999888773
No 307
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.36 E-value=1.8e-06 Score=88.93 Aligned_cols=101 Identities=19% Similarity=0.255 Sum_probs=78.2
Q ss_pred EeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCC
Q 005502 68 GSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHT 147 (693)
Q Consensus 68 gs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~ 147 (693)
.++...+.+|....+.+... .||...++.|+|+|+ +++|+|+..|..|||-...... ..-..+.+|+
T Consensus 128 agD~~~~di~s~~~~~~~~~--lGhvSml~dVavS~D--~~~IitaDRDEkIRvs~ypa~f---------~IesfclGH~ 194 (390)
T KOG3914|consen 128 AGDVYSFDILSADSGRCEPI--LGHVSMLLDVAVSPD--DQFIITADRDEKIRVSRYPATF---------VIESFCLGHK 194 (390)
T ss_pred cCCceeeeeecccccCcchh--hhhhhhhheeeecCC--CCEEEEecCCceEEEEecCccc---------chhhhccccH
Confidence 44555566666655444443 499999999999999 6999999999999987776421 1123456899
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCC
Q 005502 148 RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (693)
Q Consensus 148 ~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~ 183 (693)
..|..++..+ ...|+|+|.|++|++||+++++..
T Consensus 195 eFVS~isl~~--~~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 195 EFVSTISLTD--NYLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred hheeeeeecc--CceeeecCCCCcEEEEecccCCcc
Confidence 9999999987 356899999999999999998754
No 308
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.36 E-value=6.7e-07 Score=74.80 Aligned_cols=83 Identities=22% Similarity=0.209 Sum_probs=70.6
Q ss_pred cCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhc
Q 005502 376 EGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLC 455 (693)
Q Consensus 376 ~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~KA~~r~a~al~~l~ 455 (693)
.++ |..|+..|.++++..|.. . ....+.+.|.||++. |++..|+.-+.+ ++++|.++..++-.|+|+++||
T Consensus 2 ~~~-y~~Ai~~~~k~~~~~~~~---~-~~~~~~~la~~~~~~---~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~ 72 (84)
T PF12895_consen 2 QGN-YENAIKYYEKLLELDPTN---P-NSAYLYNLAQCYFQQ---GKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLG 72 (84)
T ss_dssp TT--HHHHHHHHHHHHHHHCGT---H-HHHHHHHHHHHHHHT---THHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT
T ss_pred Ccc-HHHHHHHHHHHHHHCCCC---h-hHHHHHHHHHHHHHC---CCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhC
Confidence 466 999999999999988742 1 255677799999995 559999999999 9999999999999999999999
Q ss_pred cHHHHHHHHHHH
Q 005502 456 KYKEALDFAIAA 467 (693)
Q Consensus 456 ~~~eA~~~~~~~ 467 (693)
++++|++.|+++
T Consensus 73 ~y~eAi~~l~~~ 84 (84)
T PF12895_consen 73 KYEEAIKALEKA 84 (84)
T ss_dssp -HHHHHHHHHHH
T ss_pred CHHHHHHHHhcC
Confidence 999999998864
No 309
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.36 E-value=0.00048 Score=70.72 Aligned_cols=252 Identities=13% Similarity=0.121 Sum_probs=155.0
Q ss_pred cCCCcEEEEEECCCCCEEEEEeC---CCcEEEEECCC--CcEE--EEeccCCCcceEEEEEeeCCCCCEEEEEeC-CCcE
Q 005502 48 GHQGCVNAISWNSKGSLLISGSD---DTHINVWSYSS--RKLL--HSIETGHSANVFCTKFVPETSDELVVSGAG-DAEV 119 (693)
Q Consensus 48 gH~~~V~~l~~s~~g~~LaSgs~---Dg~I~IWd~~~--~~~~--~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~-Dg~V 119 (693)
.+.+.++-|+|+|+++.|.++-. +|.|..|.++. |++. ... ..-..+-+.|+++++ +++|+++.. -|.|
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~-~~~g~~p~yvsvd~~--g~~vf~AnY~~g~v 113 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ-TLPGSPPCYVSVDED--GRFVFVANYHSGSV 113 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc-ccCCCCCeEEEECCC--CCEEEEEEccCceE
Confidence 46778999999999998988854 47788877764 4332 111 112233488999998 678877764 6889
Q ss_pred EEEEcCCCCCCCCCCCCCCCceeeccCCCC----------eEEEEEecCCCcEEEEEe-CCCcEEEEeCCCCCCCCCCCC
Q 005502 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRR----------VKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGS 188 (693)
Q Consensus 120 ~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~----------V~~l~~sp~~~~~l~Sgs-~Dg~V~iwDlr~~~~~~~~~~ 188 (693)
.++-++.. +.. ........|... +....+.| +++++++.. .--.|.+|++..+...+...
T Consensus 114 ~v~p~~~d-G~l------~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~- 184 (346)
T COG2706 114 SVYPLQAD-GSL------QPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADP- 184 (346)
T ss_pred EEEEcccC-Ccc------ccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEEcccCccccccc-
Confidence 99999753 222 222222235554 88889999 556665554 23468899998665331110
Q ss_pred CCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCC-CCCcccccCCCCCCccccc
Q 005502 189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPPPCVNYF 267 (693)
Q Consensus 189 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~-~~~~~~~~~~~~~~~~~~~ 267 (693)
..+ .....-..|.|+|++.-..++.=.+++|.+|..... ..+.. ++..
T Consensus 185 ---------~~v------------~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~----------lQ~i 233 (346)
T COG2706 185 ---------AEV------------KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEE----------LQTI 233 (346)
T ss_pred ---------ccc------------CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEE----------eeee
Confidence 000 112345789999985444445567999999998864 11111 1111
Q ss_pred ccCccccCCCCccceEEEEEcCCCCEEEEEec-CCcEEEEECCCCCcceEE----eecCCCceeEEeccCCCcccccCCc
Q 005502 268 CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGRAMR----YTVGDASKIMSFTPTLNGLELQPPI 342 (693)
Q Consensus 268 ~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~-Dg~V~lwDl~~~~~~~~~----~~~~~~~~~~~~~p~~~g~~~~~~~ 342 (693)
... ...-....+...|..+|||++|.++.. ...|-+|.+........+ ...+..++.+.++|+.+-+-.....
T Consensus 234 ~tl--P~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~ 311 (346)
T COG2706 234 DTL--PEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQK 311 (346)
T ss_pred ccC--ccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccC
Confidence 111 111122235778999999999998876 568999988764322222 2334457888888887666555444
Q ss_pred cc
Q 005502 343 HD 344 (693)
Q Consensus 343 ~~ 344 (693)
++
T Consensus 312 sd 313 (346)
T COG2706 312 SD 313 (346)
T ss_pred CC
Confidence 43
No 310
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.36 E-value=3.5e-05 Score=83.14 Aligned_cols=182 Identities=12% Similarity=0.135 Sum_probs=134.4
Q ss_pred cCcccccchhhhccccceEEeccC-CCcEEEEEEC--------------------CCCCEEEEEeCCCcEEEEECCCCcE
Q 005502 26 VNHSLQMHSSLVRRLSQERELEGH-QGCVNAISWN--------------------SKGSLLISGSDDTHINVWSYSSRKL 84 (693)
Q Consensus 26 ~~~~l~~~~~~i~~l~~~~~l~gH-~~~V~~l~~s--------------------~~g~~LaSgs~Dg~I~IWd~~~~~~ 84 (693)
.++.+++|.....++.+...-..| ++..+++.|. .+...|+-|...|.|.+|++..++.
T Consensus 13 ~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~i 92 (541)
T KOG4547|consen 13 GDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEI 92 (541)
T ss_pred CCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEEecCCeE
Confidence 445666666555444444333333 3445555553 1334777888999999999999988
Q ss_pred EEEec-cCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEE
Q 005502 85 LHSIE-TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 163 (693)
Q Consensus 85 ~~~l~-~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l 163 (693)
...+. ..|.++|.++.++... ..|.|++.|+.|..|+.... ..+..+.+....+.+++.+| ++.++
T Consensus 93 t~~~st~~h~~~v~~~~~~~~~--~ciyS~~ad~~v~~~~~~~~----------~~~~~~~~~~~~~~sl~is~-D~~~l 159 (541)
T KOG4547|consen 93 TAKLSTDKHYGNVNEILDAQRL--GCIYSVGADLKVVYILEKEK----------VIIRIWKEQKPLVSSLCISP-DGKIL 159 (541)
T ss_pred EEEEecCCCCCcceeeeccccc--CceEecCCceeEEEEecccc----------eeeeeeccCCCccceEEEcC-CCCEE
Confidence 88775 4799999999999884 79999999999999999864 45778888889999999999 46788
Q ss_pred EEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCC-----CCcEEEEEeCCC
Q 005502 164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST-----RPHLLLVGGSDA 238 (693)
Q Consensus 164 ~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~-----~~~~Latgs~Dg 238 (693)
++++ +.|++||+.+.+ .+..+++|..+|.+++|-.. +...|.+...+.
T Consensus 160 ~~as--~~ik~~~~~~ke-------------------------vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r 212 (541)
T KOG4547|consen 160 LTAS--RQIKVLDIETKE-------------------------VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAER 212 (541)
T ss_pred Eecc--ceEEEEEccCce-------------------------EEEEecCCCcceEEEEEEEeccccccceeeecccccc
Confidence 7776 689999998875 34455678889999988654 223445556677
Q ss_pred cEEEEecCC
Q 005502 239 FARLYDRRM 247 (693)
Q Consensus 239 ~I~lwD~r~ 247 (693)
.|.+|-+..
T Consensus 213 ~i~~w~v~~ 221 (541)
T KOG4547|consen 213 GITVWVVEK 221 (541)
T ss_pred ceeEEEEEc
Confidence 788887765
No 311
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=6.4e-05 Score=80.66 Aligned_cols=196 Identities=11% Similarity=0.139 Sum_probs=125.5
Q ss_pred CCCcEEEEEECCCC--CEEEE-----EeCCCcEEEEECCCCcE-----EEEeccCCCcceEEEEEeeCCCCCEEEEEe--
Q 005502 49 HQGCVNAISWNSKG--SLLIS-----GSDDTHINVWSYSSRKL-----LHSIETGHSANVFCTKFVPETSDELVVSGA-- 114 (693)
Q Consensus 49 H~~~V~~l~~s~~g--~~LaS-----gs~Dg~I~IWd~~~~~~-----~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs-- 114 (693)
|...|+.+.++|.+ ..+|+ ++.-..|+||.+..... .+++ ....=..+.|++-+ ..+|+.++
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksF---Fkadkvqm~WN~~g-t~LLvLastd 239 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSF---FKADKVQMKWNKLG-TALLVLASTD 239 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccc---cccceeEEEeccCC-ceEEEEEEEe
Confidence 56789999999863 35553 45667799998862211 1222 12223457788764 23433332
Q ss_pred CC---------CcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEE-EeCCCcEEEEeCCCCCCCC
Q 005502 115 GD---------AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS-ASEDGTLRQHDFRQGSSCP 184 (693)
Q Consensus 115 ~D---------g~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~S-gs~Dg~V~iwDlr~~~~~~ 184 (693)
.| .++++.++... ....-....++|.++.|+|.+..+-++ |-.=.++.+||++.
T Consensus 240 VDktn~SYYGEq~Lyll~t~g~-----------s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~----- 303 (566)
T KOG2315|consen 240 VDKTNASYYGEQTLYLLATQGE-----------SVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG----- 303 (566)
T ss_pred ecCCCccccccceEEEEEecCc-----------eEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-----
Confidence 23 34667776621 122222357899999999954333333 33446788999875
Q ss_pred CCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeC---CCcEEEEecCCCCCCcccccCCCCC
Q 005502 185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS---DAFARLYDRRMLPPLTSCQKRMSPP 261 (693)
Q Consensus 185 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~---Dg~I~lwD~r~~~~~~~~~~~~~~~ 261 (693)
.+++++..| +-+++-|+|. +++|+.++- -|.|-+||+.+.+.+.++..
T Consensus 304 ----------~~v~df~eg-------------pRN~~~fnp~-g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a----- 354 (566)
T KOG2315|consen 304 ----------KPVFDFPEG-------------PRNTAFFNPH-GNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA----- 354 (566)
T ss_pred ----------CEeEeCCCC-------------CccceEECCC-CCEEEEeecCCCCCceEEEeccchhhcccccc-----
Confidence 244444433 3467889997 678777664 48999999998665543311
Q ss_pred CcccccccCccccCCCCccceEEEEEcCCCCEEEEEec------CCcEEEEECCCC
Q 005502 262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS------GEHVYLMDVNHA 311 (693)
Q Consensus 262 ~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~------Dg~V~lwDl~~~ 311 (693)
..-+.+.|+|||++|+|+.. |+.++||+....
T Consensus 355 ------------------~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 355 ------------------ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred ------------------CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 13577999999999998876 789999998873
No 312
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.35 E-value=1.8e-06 Score=87.14 Aligned_cols=165 Identities=15% Similarity=0.191 Sum_probs=113.1
Q ss_pred EECC--CCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCC
Q 005502 57 SWNS--KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD 134 (693)
Q Consensus 57 ~~s~--~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 134 (693)
+|+- .|.. ++.+.+..|-|-|++++- ...+ ...+.|+++.|... ++++..|+..|.|.+.|++... .
T Consensus 218 awSlni~gyh-fs~G~sqqv~L~nvetg~-~qsf--~sksDVfAlQf~~s--~nLv~~GcRngeI~~iDLR~rn-----q 286 (425)
T KOG2695|consen 218 AWSLNIMGYH-FSVGLSQQVLLTNVETGH-QQSF--QSKSDVFALQFAGS--DNLVFNGCRNGEIFVIDLRCRN-----Q 286 (425)
T ss_pred hhhhccceee-ecccccceeEEEEeeccc-cccc--ccchhHHHHHhccc--CCeeEecccCCcEEEEEeeecc-----c
Confidence 5554 2444 455566778888988763 3344 25678999999987 6899999999999999998641 1
Q ss_pred CCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCC
Q 005502 135 NAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ 214 (693)
Q Consensus 135 ~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 214 (693)
.+..+...+. |.+.|+++.....+..+|++.+.+|+|.+||+|.-+.-. .+....+|
T Consensus 287 G~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~----------------------~V~qYeGH 343 (425)
T KOG2695|consen 287 GNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKK----------------------SVMQYEGH 343 (425)
T ss_pred CCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhccc----------------------ceeeeecc
Confidence 1123444443 899999998877566788888999999999999765310 01111111
Q ss_pred cc--ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCccccc
Q 005502 215 TL--SLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK 256 (693)
Q Consensus 215 ~~--~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~ 256 (693)
.. .-.-+.+++.. ..+++++.|.+.|||.++.++.+.+++.
T Consensus 344 vN~~a~l~~~v~~ee-g~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 344 VNLSAYLPAHVKEEE-GSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred ccccccccccccccc-ceEEEccCeeEEEEEecccCceeeccCC
Confidence 11 11123345653 4777799999999999999887766543
No 313
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.34 E-value=5e-05 Score=79.69 Aligned_cols=119 Identities=14% Similarity=0.208 Sum_probs=95.3
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCC-cEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCC
Q 005502 48 GHQGCVNAISWNSKGSLLISGSDDT-HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 126 (693)
Q Consensus 48 gH~~~V~~l~~s~~g~~LaSgs~Dg-~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~ 126 (693)
+|.+.|.-..+..+++-++.|..|| .+-|+|..+++... + .+.-++|++++.+|+ |.+++.+.....+.+.|+.+
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~-e~~lg~I~av~vs~d--GK~~vvaNdr~el~vididn 432 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-I-EKDLGNIEAVKVSPD--GKKVVVANDRFELWVIDIDN 432 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-e-eCCccceEEEEEcCC--CcEEEEEcCceEEEEEEecC
Confidence 6888899999999988999999999 89999998776444 4 367789999999999 78898888888888889987
Q ss_pred CCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCC----cEEEEeCCCCC
Q 005502 127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG----TLRQHDFRQGS 181 (693)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg----~V~iwDlr~~~ 181 (693)
+. +...-+....-|+.+.|+| ++.+||-+--+| .|+++|+..++
T Consensus 433 gn----------v~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~K 480 (668)
T COG4946 433 GN----------VRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGK 480 (668)
T ss_pred CC----------eeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCe
Confidence 53 2223334557899999999 778888776665 68899988754
No 314
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.33 E-value=1.2e-06 Score=88.42 Aligned_cols=164 Identities=14% Similarity=0.102 Sum_probs=109.7
Q ss_pred EEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 005502 99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR 178 (693)
Q Consensus 99 l~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr 178 (693)
++|+-+..+.. ++.+.+..|-+-|+.++. ...|. .++.|.++.|+. ..+++..|..+|.|..+|+|
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg~-----------~qsf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR 282 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGH-----------QQSFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLR 282 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeeccc-----------ccccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEee
Confidence 35554322334 455667788888888642 23343 567899999987 56788899999999999999
Q ss_pred CCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCC
Q 005502 179 QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRM 258 (693)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~ 258 (693)
... .+...+...++ |...|+++..-.....+|++.+.+|.|++||+|..+.-.
T Consensus 283 ~rn------qG~~~~a~rly---------------h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~------ 335 (425)
T KOG2695|consen 283 CRN------QGNGWCAQRLY---------------HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKK------ 335 (425)
T ss_pred ecc------cCCCcceEEEE---------------cCcchhhhhhhccccceEeeccCcCceeEeeehhhhccc------
Confidence 863 23334444443 456777877766446789999999999999999864311
Q ss_pred CCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCc
Q 005502 259 SPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGG 313 (693)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~ 313 (693)
.++.+ .+|... + .-.-+-..+....+++++.|...+||.+.++..
T Consensus 336 ----~V~qY-eGHvN~--~---a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghL 380 (425)
T KOG2695|consen 336 ----SVMQY-EGHVNL--S---AYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHL 380 (425)
T ss_pred ----ceeee-eccccc--c---cccccccccccceEEEccCeeEEEEEecccCce
Confidence 13333 222222 1 011233456677888999999999999999653
No 315
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.33 E-value=0.00042 Score=69.19 Aligned_cols=231 Identities=15% Similarity=0.146 Sum_probs=129.9
Q ss_pred EEECCCCCEEEEEeCCCcEEEEECCCC--cEEE--EeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCC
Q 005502 56 ISWNSKGSLLISGSDDTHINVWSYSSR--KLLH--SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG 131 (693)
Q Consensus 56 l~~s~~g~~LaSgs~Dg~I~IWd~~~~--~~~~--~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~ 131 (693)
++.+.+|++||.-. |..|-|=...+. ..+. .+.....-.=.-++|+|+ +.+||.+...|+|++||+.......
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD--~tlLa~a~S~G~i~vfdl~g~~lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPD--CTLLAYAESTGTIRVFDLMGSELFV 79 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCC--CcEEEEEcCCCeEEEEecccceeEE
Confidence 56678899888774 456666554332 1112 221222234467999999 6899999999999999997421110
Q ss_pred CCCCCCCCceee-ccCCCCeEEEEEecCC-----CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCce
Q 005502 132 LDDNAITPSALY-QCHTRRVKKLAVEVGN-----PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (693)
Q Consensus 132 ~~~~~~~~~~~~-~~h~~~V~~l~~sp~~-----~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (693)
+.+...+ ..-...|..+.|.+.. ...|+.-..+|.++=|-+..+.... .. ..
T Consensus 80 -----I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~-----y~------------e~ 137 (282)
T PF15492_consen 80 -----IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQG-----YQ------------EN 137 (282)
T ss_pred -----cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCc-----ce------------ee
Confidence 0111111 1123566777775422 3356667778888777653321100 00 00
Q ss_pred eeecCCCCCccceEEEEEcCCCCcEEEEEeCC-C----------cEEEEecCCCCCCcccccCCCC-------CCccccc
Q 005502 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-A----------FARLYDRRMLPPLTSCQKRMSP-------PPCVNYF 267 (693)
Q Consensus 206 ~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~D-g----------~I~lwD~r~~~~~~~~~~~~~~-------~~~~~~~ 267 (693)
..+.........|.++.++|. .++|++|+.. . -+.-|-+-+..|.-........ ..++..+
T Consensus 138 hsfsf~~~yp~Gi~~~vy~p~-h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~ 216 (282)
T PF15492_consen 138 HSFSFSSHYPHGINSAVYHPK-HRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRI 216 (282)
T ss_pred EEEEecccCCCceeEEEEcCC-CCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeec
Confidence 112222233567899999997 4677776542 1 3556666555443221111100 0111111
Q ss_pred ccCcc-ccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCC
Q 005502 268 CPMHL-SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 268 ~~~~~-~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~ 312 (693)
....+ ...+.....|..|..||||..|++...+|.|.||++.+-.
T Consensus 217 ~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 217 PSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred cceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence 11111 1112233369999999999999999999999999999843
No 316
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=1.5e-06 Score=91.99 Aligned_cols=182 Identities=16% Similarity=0.229 Sum_probs=120.0
Q ss_pred EEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEE
Q 005502 85 LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW 164 (693)
Q Consensus 85 ~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~ 164 (693)
+..+ .||...|..+.-..+ .+-|++++.|.+|++|.++.. +.. .....+..+++.|+.+|.++.|.. +-..+
T Consensus 728 L~nf-~GH~~~iRai~AidN--ENSFiSASkDKTVKLWSik~E-gD~--~~tsaCQfTY~aHkk~i~~igfL~-~lr~i- 799 (1034)
T KOG4190|consen 728 LCNF-TGHQEKIRAIAAIDN--ENSFISASKDKTVKLWSIKPE-GDE--IGTSACQFTYQAHKKPIHDIGFLA-DLRSI- 799 (1034)
T ss_pred eecc-cCcHHHhHHHHhccc--ccceeeccCCceEEEEEeccc-cCc--cccceeeeEhhhccCcccceeeee-cccee-
Confidence 3344 789998888877665 578999999999999999842 111 112246778899999999999987 43444
Q ss_pred EEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 005502 165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD 244 (693)
Q Consensus 165 Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD 244 (693)
++.||.|++||.--++... .+.+..+.+. ...|.|+.- -+.+-+++.++...+|+++|
T Consensus 800 -~ScD~giHlWDPFigr~La----------q~~dapk~~a----------~~~ikcl~n-v~~~iliAgcsaeSTVKl~D 857 (1034)
T KOG4190|consen 800 -ASCDGGIHLWDPFIGRLLA----------QMEDAPKEGA----------GGNIKCLEN-VDRHILIAGCSAESTVKLFD 857 (1034)
T ss_pred -eeccCcceeecccccchhH----------hhhcCcccCC----------CceeEeccc-Ccchheeeeccchhhheeee
Confidence 4678999999965544321 1222222221 123344321 12233344447899999999
Q ss_pred cCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCC
Q 005502 245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 245 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~ 312 (693)
.|...-...+.. +.. .-.+..+.+++..+.|++++++-.+|+|.+.|.+++.
T Consensus 858 aRsce~~~E~kV-----------cna-----~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~ 909 (1034)
T KOG4190|consen 858 ARSCEWTCELKV-----------CNA-----PGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGK 909 (1034)
T ss_pred cccccceeeEEe-----------ccC-----CCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCc
Confidence 997643222211 100 0112247899999999999999999999999999965
No 317
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.32 E-value=3.3e-06 Score=97.98 Aligned_cols=106 Identities=15% Similarity=0.015 Sum_probs=84.4
Q ss_pred hhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCc
Q 005502 362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSF 441 (693)
Q Consensus 362 ~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~ 441 (693)
.+..+...|.-.+..|+ |.+|+..|.++|+..|.. ...|.++|.+|+.. |++.+|+..+.+||+++|++.
T Consensus 330 ~a~a~~~lg~~~~~~g~-~~eA~~~~~kal~l~P~~------~~~~~~la~~~~~~---g~~~eA~~~~~~al~~~p~~~ 399 (615)
T TIGR00990 330 EAIALNLRGTFKCLKGK-HLEALADLSKSIELDPRV------TQSYIKRASMNLEL---GDPDKAEEDFDKALKLNSEDP 399 (615)
T ss_pred hHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHC---CCHHHHHHHHHHHHHhCCCCH
Confidence 33445556667777888 888888888888887765 56778888888875 458888888888888888888
Q ss_pred chhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchh
Q 005502 442 RAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 477 (693)
Q Consensus 442 KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~ 477 (693)
.+++.+|.++..+|++++|+++|+++++++|++...
T Consensus 400 ~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~ 435 (615)
T TIGR00990 400 DIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFS 435 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHH
Confidence 888888888888888888888888888888877544
No 318
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.30 E-value=7.3e-06 Score=89.43 Aligned_cols=239 Identities=12% Similarity=0.154 Sum_probs=156.3
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCc---------------EEEEeccCCCcceEEEEEeeCCCCCEEEEE
Q 005502 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---------------LLHSIETGHSANVFCTKFVPETSDELVVSG 113 (693)
Q Consensus 49 H~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~---------------~~~~l~~~h~~~I~sl~f~p~~~~~~l~sg 113 (693)
.....+|++|+....++|.|+.||.++|..+.+.. .-+++ .||.+.|.-+.|+.. .+.|-|.
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtL-eGH~~sV~vvTWNe~--~QKLTtS 89 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTL-EGHNASVMVVTWNEN--NQKLTTS 89 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhh-ccCcceEEEEEeccc--ccccccc
Confidence 34568999999999999999999999999876531 12334 699999999999988 5899999
Q ss_pred eCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCccc
Q 005502 114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 193 (693)
Q Consensus 114 s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~ 193 (693)
..+|-|.||-+-.++- -...+.....+.|.+++|+. ++..|...-+||.|.+=.+...+
T Consensus 90 Dt~GlIiVWmlykgsW--------~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsvdGNR------------ 148 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSW--------CEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSVDGNR------------ 148 (1189)
T ss_pred CCCceEEEEeeecccH--------HHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEEeeccce------------
Confidence 9999999999876431 11222334567899999998 67888889999999876665432
Q ss_pred ceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccc
Q 005502 194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 273 (693)
Q Consensus 194 ~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (693)
+|.-. -.......+.|+++ ...++.+-..|.+.+||....= ..++ . ..|...... ...
T Consensus 149 ---IwgKe-----------Lkg~~l~hv~ws~D-~~~~Lf~~ange~hlydnqgnF-~~Kl----~-~~c~Vn~tg-~~s 206 (1189)
T KOG2041|consen 149 ---IWGKE-----------LKGQLLAHVLWSED-LEQALFKKANGETHLYDNQGNF-ERKL----E-KDCEVNGTG-IFS 206 (1189)
T ss_pred ---ecchh-----------cchheccceeeccc-HHHHHhhhcCCcEEEecccccH-HHhh----h-hceEEeeee-eec
Confidence 22111 11223457889997 5677777788999999975210 0000 0 012111000 000
Q ss_pred cCCCCccceEEEEE--------cCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCccc
Q 005502 274 EHGRSSLHLTHVTF--------SPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLE 337 (693)
Q Consensus 274 ~~~h~~~~V~~v~f--------spdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~ 337 (693)
..+| .|-.+.| -|+...|+++..+|.+.|..-.+.. .++.+..+-.+....|++...-++
T Consensus 207 ~~~~---kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~-~Pvv~dtgm~~vgakWnh~G~vLA 274 (1189)
T KOG2041|consen 207 NFPT---KIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDP-EPVVVDTGMKIVGAKWNHNGAVLA 274 (1189)
T ss_pred CCCc---cccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCC-CCeEEecccEeecceecCCCcEEE
Confidence 0011 1333444 3588899999999999988766643 444444444444556666544433
No 319
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.30 E-value=1.2e-06 Score=69.14 Aligned_cols=64 Identities=30% Similarity=0.299 Sum_probs=57.6
Q ss_pred hHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCc
Q 005502 409 IRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS 475 (693)
Q Consensus 409 NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~ 475 (693)
.+|..+++. |++.+|+..+.++++.+|.+..+++.+|.++..+|++++|.+.++++++++|+++
T Consensus 2 ~~a~~~~~~---g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQ---GDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHC---THHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHc---CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 467888885 5699999999999999999999999999999999999999999999999999863
No 320
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=2.3e-06 Score=90.38 Aligned_cols=103 Identities=17% Similarity=0.115 Sum_probs=93.6
Q ss_pred hhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcc
Q 005502 363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR 442 (693)
Q Consensus 363 a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~K 442 (693)
++.+.-.|.-.|-.|+ +..|-+.+.++|.+.+.. ..+|-.||+.|+.+.. ...-..|.++|..|||.++-
T Consensus 326 A~al~~~gtF~fL~g~-~~~a~~d~~~~I~l~~~~------~~lyI~~a~~y~d~~~---~~~~~~~F~~A~~ldp~n~d 395 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGD-SLGAQEDFDAAIKLDPAF------NSLYIKRAAAYADENQ---SEKMWKDFNKAEDLDPENPD 395 (606)
T ss_pred HHHHHHhhhhhhhcCC-chhhhhhHHHHHhcCccc------chHHHHHHHHHhhhhc---cHHHHHHHHHHHhcCCCCCc
Confidence 5667777888888999 889999999999998876 4569999999999654 88899999999999999999
Q ss_pred hhhhHHHHHHHhccHHHHHHHHHHHcccCCCCc
Q 005502 443 AHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS 475 (693)
Q Consensus 443 A~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~ 475 (693)
.||.|||.++-|++|++|+.+|++++.++|++.
T Consensus 396 vYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~ 428 (606)
T KOG0547|consen 396 VYYHRGQMRFLLQQYEEAIADFQKAISLDPENA 428 (606)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhh
Confidence 999999999999999999999999999999984
No 321
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.27 E-value=7.4e-06 Score=81.50 Aligned_cols=226 Identities=18% Similarity=0.268 Sum_probs=139.5
Q ss_pred CcEEEEEECCCC--CEEEEEeCCCcEEEEECCCC------------------c------------------------EEE
Q 005502 51 GCVNAISWNSKG--SLLISGSDDTHINVWSYSSR------------------K------------------------LLH 86 (693)
Q Consensus 51 ~~V~~l~~s~~g--~~LaSgs~Dg~I~IWd~~~~------------------~------------------------~~~ 86 (693)
..|+.|.|-.++ ..++..+.|.+|++|.+... + +.+
T Consensus 86 EKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~r 165 (460)
T COG5170 86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCR 165 (460)
T ss_pred HHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccce
Confidence 468899998754 24555568899999986431 0 000
Q ss_pred EeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccC-----CCCeEEEEEecCCCc
Q 005502 87 SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH-----TRRVKKLAVEVGNPH 161 (693)
Q Consensus 87 ~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h-----~~~V~~l~~sp~~~~ 161 (693)
.....|..-|.++.|..+. ..+++ +.|-.|.+|++....+.. .+.-++.| +.-|++..|+|...+
T Consensus 166 vyaNaH~yhiNSiS~NsD~--et~lS-aDdLrINLWnl~i~D~sF-------nIVDiKP~nmeeLteVItSaeFhp~~cn 235 (460)
T COG5170 166 VYANAHPYHINSISFNSDK--ETLLS-ADDLRINLWNLEIIDGSF-------NIVDIKPHNMEELTEVITSAEFHPEMCN 235 (460)
T ss_pred eccccceeEeeeeeecCch--heeee-ccceeeeeccccccCCce-------EEEeccCccHHHHHHHHhhcccCHhHcc
Confidence 1114678888999998773 55555 468899999998643321 12223333 346888999998888
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEE
Q 005502 162 VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFAR 241 (693)
Q Consensus 162 ~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~ 241 (693)
+|.-.+..|.|++-|+|+...|.... .++...... ........-...|..+.|+|. ++++++-+ --+|+
T Consensus 236 ~fmYSsSkG~Ikl~DlRq~alcdn~~--------klfe~~~D~-v~~~ff~eivsSISD~kFs~n-gryIlsRd-yltvk 304 (460)
T COG5170 236 VFMYSSSKGEIKLNDLRQSALCDNSK--------KLFELTIDG-VDVDFFEEIVSSISDFKFSDN-GRYILSRD-YLTVK 304 (460)
T ss_pred eEEEecCCCcEEehhhhhhhhccCch--------hhhhhccCc-ccchhHHHHhhhhcceEEcCC-CcEEEEec-cceEE
Confidence 88888899999999999876551110 000000000 001111122346788999996 67776654 46899
Q ss_pred EEecCCCCCCcccccCCCCCCcccccccCcccc--------CCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCC
Q 005502 242 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE--------HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 242 lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~ 310 (693)
|||.++.+ .|+.+. |+|-.. ....-..-..+.||-+.+.+++|+..+..-+|-..+
T Consensus 305 iwDvnm~k------------~pikTi-~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 305 IWDVNMAK------------NPIKTI-PMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred EEeccccc------------CCceee-chHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecccc
Confidence 99999865 222222 111100 000001124588999999999999988877777555
No 322
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.27 E-value=4.3e-05 Score=84.49 Aligned_cols=241 Identities=17% Similarity=0.202 Sum_probs=154.9
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCC----------CCEEEEEeCCCcE
Q 005502 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS----------DELVVSGAGDAEV 119 (693)
Q Consensus 50 ~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~----------~~~l~sgs~Dg~V 119 (693)
...-+++.|+|.| +||-|+. ..|.|-|..+-+.+.++ .-|...|+.|+|.|... .-+|+++...|.|
T Consensus 15 ~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsi-e~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI 91 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSI-ELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI 91 (1062)
T ss_pred cccccccccCccc-eEEEecC-ceEEEEehhhhhhhhcc-ccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence 3346789999977 6777765 47899999998999999 68999999999998531 2367888889999
Q ss_pred EEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecC---CCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceE
Q 005502 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG---NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (693)
Q Consensus 120 ~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~---~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~ 196 (693)
.+||+... ..+..++.|.++|..++|-|. ...+|++-....+|.+|+..+++.
T Consensus 92 il~d~~~~----------s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k-------------- 147 (1062)
T KOG1912|consen 92 ILVDFVLA----------SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK-------------- 147 (1062)
T ss_pred EEEEehhh----------hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce--------------
Confidence 99999865 234556778899999999762 235777777788999999988762
Q ss_pred EEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC----CcccccCCCCCCcccccccCcc
Q 005502 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP----LTSCQKRMSPPPCVNYFCPMHL 272 (693)
Q Consensus 197 l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~----~~~~~~~~~~~~~~~~~~~~~~ 272 (693)
+|.... ......|+.+.|-+...+.+-+..|.|-+-+.--.++ .+.++.... +- -+.|+
T Consensus 148 ~Wk~~y-----------s~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd---~S---dl~~l 210 (1062)
T KOG1912|consen 148 FWKYDY-----------SHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSD---HS---DLAHL 210 (1062)
T ss_pred eecccc-----------CCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecC---cc---chhhh
Confidence 333222 2345678899998888888888888888776543221 111110000 00 00000
Q ss_pred cc-----CCCC-----ccce---EEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCC
Q 005502 273 SE-----HGRS-----SLHL---THVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN 334 (693)
Q Consensus 273 ~~-----~~h~-----~~~V---~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~ 334 (693)
.. ..+. ..-| ..++|+|.-+.++-......++++|++-.....+..........+.+-|+..
T Consensus 211 ere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~ 285 (1062)
T KOG1912|consen 211 ERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPR 285 (1062)
T ss_pred hhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCC
Confidence 00 0000 0012 2367888877666666778899999887443333332223333445555433
No 323
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.24 E-value=6.8e-06 Score=98.54 Aligned_cols=107 Identities=8% Similarity=-0.079 Sum_probs=94.7
Q ss_pred hhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcc
Q 005502 363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR 442 (693)
Q Consensus 363 a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~K 442 (693)
...+...|.-+.+.|+ +.+|+..|.+++...|+. ...+.|.+.++... |++.+|+.-+.+|++++|+++.
T Consensus 609 ~~a~~~LA~~l~~lG~-~deA~~~l~~AL~l~Pd~------~~a~~nLG~aL~~~---G~~eeAi~~l~~AL~l~P~~~~ 678 (987)
T PRK09782 609 ANAYVARATIYRQRHN-VPAAVSDLRAALELEPNN------SNYQAALGYALWDS---GDIAQSREMLERAHKGLPDDPA 678 (987)
T ss_pred HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHC---CCHHHHHHHHHHHHHhCCCCHH
Confidence 3445556777778888 999999999999988887 67889999999985 5599999999999999999999
Q ss_pred hhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHH
Q 005502 443 AHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAE 479 (693)
Q Consensus 443 A~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~ 479 (693)
+++.+|.++..+|++++|..+++++++++|++..+..
T Consensus 679 a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~ 715 (987)
T PRK09782 679 LIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITP 715 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhh
Confidence 9999999999999999999999999999999977764
No 324
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.23 E-value=3.4e-06 Score=91.16 Aligned_cols=101 Identities=17% Similarity=0.062 Sum_probs=70.8
Q ss_pred HhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHH
Q 005502 371 RNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEA 450 (693)
Q Consensus 371 n~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~KA~~r~a~a 450 (693)
.-+-++|+ +.+||.+|.+||...|.. +..|+|++..|-.+ ||..+|+.+..+||.++|.+..||-.+|-+
T Consensus 396 ~i~kqqgn-l~~Ai~~YkealrI~P~f------Ada~~NmGnt~ke~---g~v~~A~q~y~rAI~~nPt~AeAhsNLasi 465 (966)
T KOG4626|consen 396 SIYKQQGN-LDDAIMCYKEALRIKPTF------ADALSNMGNTYKEM---GDVSAAIQCYTRAIQINPTFAEAHSNLASI 465 (966)
T ss_pred HHHHhccc-HHHHHHHHHHHHhcCchH------HHHHHhcchHHHHh---hhHHHHHHHHHHHHhcCcHHHHHHhhHHHH
Confidence 33445566 677777777777666655 66777777777663 557777777777777777777777777777
Q ss_pred HHHhccHHHHHHHHHHHcccCCCCchhHHHH
Q 005502 451 LEQLCKYKEALDFAIAAQCLDPSNSVMAEKV 481 (693)
Q Consensus 451 l~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~ 481 (693)
+...|...+|+..|++++++.|+..++---+
T Consensus 466 ~kDsGni~~AI~sY~~aLklkPDfpdA~cNl 496 (966)
T KOG4626|consen 466 YKDSGNIPEAIQSYRTALKLKPDFPDAYCNL 496 (966)
T ss_pred hhccCCcHHHHHHHHHHHccCCCCchhhhHH
Confidence 7777777777777777777777776654333
No 325
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.21 E-value=5.4e-06 Score=77.00 Aligned_cols=85 Identities=19% Similarity=0.130 Sum_probs=74.5
Q ss_pred HHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhccHHHHHH
Q 005502 383 GIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALD 462 (693)
Q Consensus 383 Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~KA~~r~a~al~~l~~~~eA~~ 462 (693)
-...|.++|+..|.. +.+++.++.++ |++.+|+..|.+|+.++|.+..+++.+|.++..+|++++|..
T Consensus 12 ~~~~~~~al~~~p~~---------~~~~g~~~~~~---g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 79 (144)
T PRK15359 12 PEDILKQLLSVDPET---------VYASGYASWQE---GDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAIN 79 (144)
T ss_pred HHHHHHHHHHcCHHH---------HHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 346788999887643 45788999885 559999999999999999999999999999999999999999
Q ss_pred HHHHHcccCCCCchhHH
Q 005502 463 FAIAAQCLDPSNSVMAE 479 (693)
Q Consensus 463 ~~~~~~~~~p~~~~~~~ 479 (693)
+|+++++++|++....-
T Consensus 80 ~y~~Al~l~p~~~~a~~ 96 (144)
T PRK15359 80 FYGHALMLDASHPEPVY 96 (144)
T ss_pred HHHHHHhcCCCCcHHHH
Confidence 99999999999976543
No 326
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=6.4e-05 Score=77.61 Aligned_cols=87 Identities=11% Similarity=0.239 Sum_probs=74.7
Q ss_pred ccceEEeccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 005502 40 LSQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 118 (693)
Q Consensus 40 l~~~~~l~gH~~~V~~l~~s~~g~-~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~ 118 (693)
++....+-+|...|..|+|+|..+ +|..++-+.+|+|.|+.+..++..+ ..+ ..+++++|.-+. .++|+.|-..|.
T Consensus 183 fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy-~a~-~~~wSC~wDlde-~h~IYaGl~nG~ 259 (463)
T KOG1645|consen 183 FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSY-IAY-NQIWSCCWDLDE-RHVIYAGLQNGM 259 (463)
T ss_pred cchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehe-ecc-CCceeeeeccCC-cceeEEeccCce
Confidence 333446778999999999999877 7889999999999999998888877 455 789999999886 689999999999
Q ss_pred EEEEEcCCCCC
Q 005502 119 VRLFNLSRFSG 129 (693)
Q Consensus 119 V~vwdl~~~~~ 129 (693)
|.|||++...+
T Consensus 260 VlvyD~R~~~~ 270 (463)
T KOG1645|consen 260 VLVYDMRQPEG 270 (463)
T ss_pred EEEEEccCCCc
Confidence 99999997653
No 327
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.18 E-value=8.8e-06 Score=78.08 Aligned_cols=109 Identities=13% Similarity=0.070 Sum_probs=92.2
Q ss_pred CcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCC
Q 005502 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS 438 (693)
Q Consensus 359 ~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp 438 (693)
.+..+..+...|..+...|+ |.+|+..|.++++..+.. ......+.+.|.+|.+. |++..|+....+|++++|
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~---~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p 103 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGE-YAEALENYEEALKLEEDP---NDRSYILYNMGIIYASN---GEHDKALEYYHQALELNP 103 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHhhcc---chHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCc
Confidence 44556667788888889999 999999999999876543 11246789999999996 559999999999999999
Q ss_pred CCcchhhhHHHHHHHhcc--------------HHHHHHHHHHHcccCCCC
Q 005502 439 SSFRAHLYMSEALEQLCK--------------YKEALDFAIAAQCLDPSN 474 (693)
Q Consensus 439 ~~~KA~~r~a~al~~l~~--------------~~eA~~~~~~~~~~~p~~ 474 (693)
.+..+++.++.++..+++ +++|++++++++.++|++
T Consensus 104 ~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 104 KQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred ccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 999999999999999887 678888888888888876
No 328
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.18 E-value=1.8e-05 Score=71.85 Aligned_cols=108 Identities=14% Similarity=-0.001 Sum_probs=92.8
Q ss_pred hhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcc
Q 005502 363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR 442 (693)
Q Consensus 363 a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~K 442 (693)
...+-.+|...++.|+ |..|++.+.......|.. +.........+-+|++. +++.+|+.-..+-|+|+|+|.+
T Consensus 10 ~~~ly~~a~~~l~~~~-Y~~A~~~le~L~~ryP~g---~ya~qAqL~l~yayy~~---~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 10 PQELYQEAQEALQKGN-YEEAIKQLEALDTRYPFG---EYAEQAQLDLAYAYYKQ---GDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHHHHHHHHHhCC-HHHHHHHHHHHHhcCCCC---cccHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCCCC
Confidence 5678889999999999 999999999988888765 33234566789999995 5599999999999999999987
Q ss_pred ---hhhhHHHHHHHhcc---------------HHHHHHHHHHHcccCCCCchh
Q 005502 443 ---AHLYMSEALEQLCK---------------YKEALDFAIAAQCLDPSNSVM 477 (693)
Q Consensus 443 ---A~~r~a~al~~l~~---------------~~eA~~~~~~~~~~~p~~~~~ 477 (693)
|+|++|.+.+.+.. ..+|+.+|++++...|+..-+
T Consensus 83 vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 83 VDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred ccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 78999999999987 889999999999999987544
No 329
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.18 E-value=5.2e-06 Score=67.14 Aligned_cols=64 Identities=25% Similarity=0.248 Sum_probs=57.9
Q ss_pred HHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhH
Q 005502 412 ALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA 478 (693)
Q Consensus 412 ~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~ 478 (693)
..|++. +|+.+|+..+.++++++|.++.+++.+|.++..+|++.+|++++++++++.|++..+.
T Consensus 3 ~~~~~~---~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQ---EDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhC---CCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 355663 5699999999999999999999999999999999999999999999999999876653
No 330
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=2.1e-05 Score=79.60 Aligned_cols=122 Identities=17% Similarity=0.040 Sum_probs=102.3
Q ss_pred cccCcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhc
Q 005502 356 VATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARR 435 (693)
Q Consensus 356 ~~~~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ 435 (693)
....|..++.+.-.|.-++..++ +..|...|.+|+++.+++ +..+.--|.+++-..--.+..++-.-..+||+
T Consensus 149 L~~nP~d~egW~~Lg~~ym~~~~-~~~A~~AY~~A~rL~g~n------~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 149 LQQNPGDAEGWDLLGRAYMALGR-ASDALLAYRNALRLAGDN------PEILLGLAEALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred HHhCCCCchhHHHHHHHHHHhcc-hhHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence 45577888999999999999999 999999999999999887 66666556666554333456667888899999
Q ss_pred cCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHHH
Q 005502 436 IDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENI 484 (693)
Q Consensus 436 ldp~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l 484 (693)
+||++++|++.+|.++++-|+|.+|...++..+.+.|.+..-...+++.
T Consensus 222 ~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ 270 (287)
T COG4235 222 LDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERS 270 (287)
T ss_pred cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 9999999999999999999999999999999999999887765544443
No 331
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.17 E-value=3.9e-06 Score=93.97 Aligned_cols=126 Identities=17% Similarity=0.075 Sum_probs=110.9
Q ss_pred CcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCC
Q 005502 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS 438 (693)
Q Consensus 359 ~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp 438 (693)
....+..++.+||..|..+. |..|--.|..++...|.. ....+.+++|+++||+..+- ++|..++.+|.-|+...|
T Consensus 49 ~l~ra~~~~~E~n~~~~K~d-~~~~~~~~~~~~~llp~~--~~~~a~~~~~~~s~~m~~~l-~~~~~~~~E~~la~~~~p 124 (748)
T KOG4151|consen 49 FLSRALELKEEGNKLFQKRD-YEGAMFRYDCAIKLLPKD--HHVVATLRSNQASCYMQLGL-GEYPKAIPECELALESQP 124 (748)
T ss_pred HHHHHHHHHhhhhHHhhhhh-hhccchhhhhhheecccc--chhhhhHHHHHHHHHhhcCc-cchhhhcCchhhhhhccc
Confidence 34457788999999999999 999999999999988743 33447799999999999875 889999999999999999
Q ss_pred CCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHHHHHHH
Q 005502 439 SSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHI 488 (693)
Q Consensus 439 ~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l~~~i 488 (693)
...||+++|+.+|..+++++-|++++.-....+|.+..+.+-+.+++.-+
T Consensus 125 ~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll 174 (748)
T KOG4151|consen 125 RISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL 174 (748)
T ss_pred hHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999977777666766655
No 332
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.15 E-value=1.9e-05 Score=79.73 Aligned_cols=116 Identities=14% Similarity=-0.019 Sum_probs=98.8
Q ss_pred CcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCC
Q 005502 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS 438 (693)
Q Consensus 359 ~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp 438 (693)
.......+...|...+..|+ |..|+..|.+++...|.. ......+.+.|.+|++. |++..|+.-+.++++++|
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~-~~~A~~~~~~~~~~~p~~---~~~~~a~~~la~~~~~~---~~~~~A~~~~~~~l~~~p 101 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGD-YTEAIKYFEALESRYPFS---PYAEQAQLDLAYAYYKS---GDYAEAIAAADRFIRLHP 101 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCc---hhHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHCc
Confidence 34556788889999999999 999999999999988765 22234578889999996 559999999999999999
Q ss_pred CCcc---hhhhHHHHHHHh--------ccHHHHHHHHHHHcccCCCCchhHHHH
Q 005502 439 SSFR---AHLYMSEALEQL--------CKYKEALDFAIAAQCLDPSNSVMAEKV 481 (693)
Q Consensus 439 ~~~K---A~~r~a~al~~l--------~~~~eA~~~~~~~~~~~p~~~~~~~~~ 481 (693)
++.. ++|.++.++..+ +++++|++.+++++..+|++......+
T Consensus 102 ~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~ 155 (235)
T TIGR03302 102 NHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK 155 (235)
T ss_pred CCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH
Confidence 9988 799999999987 899999999999999999986554333
No 333
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.15 E-value=6e-06 Score=57.82 Aligned_cols=38 Identities=24% Similarity=0.622 Sum_probs=35.2
Q ss_pred cEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 005502 83 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 123 (693)
Q Consensus 83 ~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwd 123 (693)
+++.++ .+|.+.|++|+|+|+ +.+|++|+.|++|++||
T Consensus 2 ~~~~~~-~~h~~~i~~i~~~~~--~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTF-RGHSSSINSIAWSPD--GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEE-ESSSSSEEEEEEETT--SSEEEEEETTSEEEEEE
T ss_pred eEEEEE-cCCCCcEEEEEEecc--cccceeeCCCCEEEEEC
Confidence 567778 799999999999999 69999999999999997
No 334
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.14 E-value=0.0008 Score=73.98 Aligned_cols=193 Identities=10% Similarity=0.084 Sum_probs=110.5
Q ss_pred cEEEEEECCCCCE-EEEEeCC---CcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCC--cEEEEEcC
Q 005502 52 CVNAISWNSKGSL-LISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA--EVRLFNLS 125 (693)
Q Consensus 52 ~V~~l~~s~~g~~-LaSgs~D---g~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg--~V~vwdl~ 125 (693)
.+..-.|+|+|+. ++..+.+ ..|.++|+.+++..... ...+.+....|+|++ ..++++.+.++ .|.++|+.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt--~~~g~~~~~~~SPDG-~~la~~~~~~g~~~Iy~~dl~ 265 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA--SSQGMLVVSDVSKDG-SKLLLTMAPKGQPDIYLYDTN 265 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe--cCCCcEEeeEECCCC-CEEEEEEccCCCcEEEEEECC
Confidence 7788999999984 6654443 45889999887654433 345556778899994 34445555444 56666765
Q ss_pred CCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEeCCCCCCCCCCCCCCcccceEEEeccCC
Q 005502 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 203 (693)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg--~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (693)
... ...+..+........|+|++..++++....| .|.+.|+.++..
T Consensus 266 ~g~-----------~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~--------------------- 313 (419)
T PRK04043 266 TKT-----------LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV--------------------- 313 (419)
T ss_pred CCc-----------EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe---------------------
Confidence 431 2222223322344579996666666665544 455556654431
Q ss_pred ceeeecCCCCCccceEEEEEcCCCCcEEEEEeCC---------CcEEEEecCCCCCCcccccCCCCCCcccccccCcccc
Q 005502 204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---------AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 274 (693)
Q Consensus 204 ~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~D---------g~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (693)
..+..... . ...|+|+ ++.|+..+.. ..|.+.|+..+... .+..
T Consensus 314 --~rlt~~g~---~--~~~~SPD-G~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~--------------~LT~----- 366 (419)
T PRK04043 314 --EQVVFHGK---N--NSSVSTY-KNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR--------------RLTA----- 366 (419)
T ss_pred --EeCccCCC---c--CceECCC-CCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE--------------ECCC-----
Confidence 11111111 1 1379998 4555544433 36777787654311 0100
Q ss_pred CCCCccceEEEEEcCCCCEEEEEecC---CcEEEEECCC
Q 005502 275 HGRSSLHLTHVTFSPNGEEVLLSYSG---EHVYLMDVNH 310 (693)
Q Consensus 275 ~~h~~~~V~~v~fspdg~~L~sgs~D---g~V~lwDl~~ 310 (693)
.+ ......|+|||+.|+..... ..+.+.++..
T Consensus 367 ~~----~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 367 NG----VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CC----CcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 00 12247899999988766542 2477777766
No 335
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.13 E-value=2.1e-05 Score=93.45 Aligned_cols=102 Identities=9% Similarity=0.037 Sum_probs=93.7
Q ss_pred HHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhh
Q 005502 366 LVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHL 445 (693)
Q Consensus 366 lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~KA~~ 445 (693)
....+.-....|+ +.+|++.+.+++...|.. ..++.++|.++.++++ +.+|+..+.+|++++|++..+++
T Consensus 362 ~~~~a~~l~~~g~-~~eA~~~l~~al~~~P~n------~~l~~~lA~l~~~~g~---~~~A~~~l~~al~l~Pd~~~l~~ 431 (765)
T PRK10049 362 QSLLSQVAKYSND-LPQAEMRARELAYNAPGN------QGLRIDYASVLQARGW---PRAAENELKKAEVLEPRNINLEV 431 (765)
T ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCChHHHH
Confidence 3456667778899 999999999999999887 6799999999999877 99999999999999999999999
Q ss_pred hHHHHHHHhccHHHHHHHHHHHcccCCCCchh
Q 005502 446 YMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 477 (693)
Q Consensus 446 r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~ 477 (693)
.+|.+++.++++++|...++++++.+|+++.+
T Consensus 432 ~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 432 EQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999999999999999999999999764
No 336
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.12 E-value=0.0023 Score=67.91 Aligned_cols=234 Identities=10% Similarity=0.089 Sum_probs=130.7
Q ss_pred CcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEe----------CCCcEEEEEcCCCCCCCCCCCCCCCce
Q 005502 72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA----------GDAEVRLFNLSRFSGRGLDDNAITPSA 141 (693)
Q Consensus 72 g~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs----------~Dg~V~vwdl~~~~~~~~~~~~~~~~~ 141 (693)
++|.|.|..+++.+..+..+..... + ++|+ ++.|+.+. .+..|.+||..+. +.+.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~--~-~spD--g~~lyva~~~~~R~~~G~~~d~V~v~D~~t~----------~~~~ 91 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP--V-VASD--GSFFAHASTVYSRIARGKRTDYVEVIDPQTH----------LPIA 91 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce--e-ECCC--CCEEEEEeccccccccCCCCCEEEEEECccC----------cEEe
Confidence 7899999999999999865554443 4 8998 45555554 4889999999975 2233
Q ss_pred eecc-------CCCCeEEEEEecCCCcEEEEEe-C-CCcEEEEeCCCCCCCCCCCCCCcccceEEEe--------ccCCc
Q 005502 142 LYQC-------HTRRVKKLAVEVGNPHVVWSAS-E-DGTLRQHDFRQGSSCPPAGSSHQECRNILLD--------LRCGA 204 (693)
Q Consensus 142 ~~~~-------h~~~V~~l~~sp~~~~~l~Sgs-~-Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~--------~~~~~ 204 (693)
.+.- .......++++| ++++++... . +..|.+.|+.+.+....+.. ..|..++.. ...+.
T Consensus 92 ~i~~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v--p~~~~vy~t~e~~~~~~~~Dg~ 168 (352)
T TIGR02658 92 DIELPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV--PDCYHIFPTANDTFFMHCRDGS 168 (352)
T ss_pred EEccCCCchhhccCccceEEECC-CCCEEEEecCCCCCEEEEEECCCCcEEEEEeC--CCCcEEEEecCCccEEEeecCc
Confidence 3321 122334788999 455555444 3 78999999998875422221 112222111 00111
Q ss_pred eeeecCCCCCccceEEE--------------EEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccC
Q 005502 205 KRSLADPPKQTLSLKSC--------------DISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM 270 (693)
Q Consensus 205 ~~~l~~~~~~~~~v~sl--------------~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~ 270 (693)
...+..-.......... .|.+.++.++.+... |.|.+.|+......... .+..+...
T Consensus 169 ~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~--------~~~~~~~~ 239 (352)
T TIGR02658 169 LAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLP--------AIEAFTEA 239 (352)
T ss_pred eEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecc--------eeeecccc
Confidence 11100000000001111 334533566666655 99999997543321100 00000000
Q ss_pred ccccCCCCccceEEEEEcCCCCEEEEEec----------CCcEEEEECCCCCcceEEeecCCCceeEEeccCCC
Q 005502 271 HLSEHGRSSLHLTHVTFSPNGEEVLLSYS----------GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN 334 (693)
Q Consensus 271 ~~~~~~h~~~~V~~v~fspdg~~L~sgs~----------Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~ 334 (693)
.. ..+-....+.-++++|+|+.|++... .+.|.++|..+.+ .......+..+..++++|+.+
T Consensus 240 ~~-~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k-vi~~i~vG~~~~~iavS~Dgk 311 (352)
T TIGR02658 240 EK-ADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK-RLRKIELGHEIDSINVSQDAK 311 (352)
T ss_pred cc-ccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe-EEEEEeCCCceeeEEECCCCC
Confidence 00 00001112444999999999988542 2589999999965 344444577888999999977
No 337
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.12 E-value=6.1e-06 Score=89.17 Aligned_cols=97 Identities=14% Similarity=0.081 Sum_probs=84.3
Q ss_pred HHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHH
Q 005502 370 ARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSE 449 (693)
Q Consensus 370 gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~KA~~r~a~ 449 (693)
|.-+.-.++ |..||++|+.||...|.+ ..++...+|.+-.-.. ..+||.-.++||+|.|+++++.|.+|-
T Consensus 437 GVLy~ls~e-fdraiDcf~~AL~v~Pnd------~~lWNRLGAtLAN~~~---s~EAIsAY~rALqLqP~yVR~RyNlgI 506 (579)
T KOG1125|consen 437 GVLYNLSGE-FDRAVDCFEAALQVKPND------YLLWNRLGATLANGNR---SEEAISAYNRALQLQPGYVRVRYNLGI 506 (579)
T ss_pred HHHHhcchH-HHHHHHHHHHHHhcCCch------HHHHHHhhHHhcCCcc---cHHHHHHHHHHHhcCCCeeeeehhhhh
Confidence 334445677 999999999999999988 7788777777766544 889999999999999999999999999
Q ss_pred HHHHhccHHHHHHHHHHHcccCCCCch
Q 005502 450 ALEQLCKYKEALDFAIAAQCLDPSNSV 476 (693)
Q Consensus 450 al~~l~~~~eA~~~~~~~~~~~p~~~~ 476 (693)
+++.||-|+||.+.|-.|+.+.+...+
T Consensus 507 S~mNlG~ykEA~~hlL~AL~mq~ks~~ 533 (579)
T KOG1125|consen 507 SCMNLGAYKEAVKHLLEALSMQRKSRN 533 (579)
T ss_pred hhhhhhhHHHHHHHHHHHHHhhhcccc
Confidence 999999999999999999998887433
No 338
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.12 E-value=2.7e-05 Score=74.39 Aligned_cols=108 Identities=13% Similarity=0.020 Sum_probs=87.5
Q ss_pred chhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCC
Q 005502 361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS 440 (693)
Q Consensus 361 ~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~ 440 (693)
..+..+...|...+..|+ |.+|+..|.+++...++. ...+..|.|.|.+|.+++. +..|+..+.+|++++|.+
T Consensus 33 ~~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~l~~~~---~~~~~~~~~lg~~~~~~g~---~~eA~~~~~~Al~~~~~~ 105 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGE-YAEALQNYYEAMRLEIDP---YDRSYILYNIGLIHTSNGE---HTKALEYYFQALERNPFL 105 (168)
T ss_pred HHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhccccc---hhhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCcCc
Confidence 456667778888999999 999999999999876542 2224588999999999755 999999999999999999
Q ss_pred cchhhhHHHHHH-------HhccHH-------HHHHHHHHHcccCCCCc
Q 005502 441 FRAHLYMSEALE-------QLCKYK-------EALDFAIAAQCLDPSNS 475 (693)
Q Consensus 441 ~KA~~r~a~al~-------~l~~~~-------eA~~~~~~~~~~~p~~~ 475 (693)
..+++.++.++. .+|+++ +|+..+++++.++|.+.
T Consensus 106 ~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 106 PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 999999888888 777766 55555566777787653
No 339
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.11 E-value=1.8e-05 Score=91.48 Aligned_cols=108 Identities=11% Similarity=-0.023 Sum_probs=91.7
Q ss_pred cchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCC
Q 005502 360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSS 439 (693)
Q Consensus 360 ~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~ 439 (693)
+..+.-+...|.-....|. |++|...+..+++..|+. .....|+|.++.+++. +.+|+.-|.++|+.+|+
T Consensus 83 ~~~~~~~~~La~i~~~~g~-~~ea~~~l~~~~~~~Pd~------~~a~~~~a~~L~~~~~---~eeA~~~~~~~l~~~p~ 152 (694)
T PRK15179 83 PHTELFQVLVARALEAAHR-SDEGLAVWRGIHQRFPDS------SEAFILMLRGVKRQQG---IEAGRAEIELYFSGGSS 152 (694)
T ss_pred cccHHHHHHHHHHHHHcCC-cHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHhcc---HHHHHHHHHHHhhcCCC
Confidence 3345555566666777888 999999999999999887 7788899999988777 99999999999999999
Q ss_pred CcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchh
Q 005502 440 SFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 477 (693)
Q Consensus 440 ~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~ 477 (693)
+.-+++.+|.+|.++|+|++|.+.|++++...|++.++
T Consensus 153 ~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~ 190 (694)
T PRK15179 153 SAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENG 190 (694)
T ss_pred CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHH
Confidence 99999999999999999999999999999888876544
No 340
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.11 E-value=8.2e-06 Score=85.59 Aligned_cols=93 Identities=17% Similarity=0.065 Sum_probs=82.5
Q ss_pred hhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhccHHH
Q 005502 380 PYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKE 459 (693)
Q Consensus 380 y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~KA~~r~a~al~~l~~~~e 459 (693)
.+.+|..++++|...+. .++.++..|.+|+.+|.+. |++..|+.++.+||+++|+++.||+.+|.++..+|++++
T Consensus 42 ~e~~i~~~~~~l~~~~~--~~~~~a~~~~~~g~~~~~~---g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 42 QEVILARLNQILASRDL--TDEERAQLHYERGVLYDSL---GLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred HHHHHHHHHHHHccccC--CcHhhHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHH
Confidence 67899999999976542 2445577899999999996 559999999999999999999999999999999999999
Q ss_pred HHHHHHHHcccCCCCchh
Q 005502 460 ALDFAIAAQCLDPSNSVM 477 (693)
Q Consensus 460 A~~~~~~~~~~~p~~~~~ 477 (693)
|+++++++++++|++..+
T Consensus 117 A~~~~~~Al~l~P~~~~a 134 (296)
T PRK11189 117 AYEAFDSVLELDPTYNYA 134 (296)
T ss_pred HHHHHHHHHHhCCCCHHH
Confidence 999999999999998654
No 341
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=0.00015 Score=80.94 Aligned_cols=166 Identities=13% Similarity=0.153 Sum_probs=111.3
Q ss_pred EeccCCCcEEEEEECCC-------------CCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeC---CCCC
Q 005502 45 ELEGHQGCVNAISWNSK-------------GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE---TSDE 108 (693)
Q Consensus 45 ~l~gH~~~V~~l~~s~~-------------g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~---~~~~ 108 (693)
-|..|.|.|.-..+.-+ |.+++|||.||+|.|-.+.+.+..+++ ....++.+|+++|+ ....
T Consensus 53 ~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~--df~rpiksial~Pd~~~~~sk 130 (846)
T KOG2066|consen 53 ALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQY--DFKRPIKSIALHPDFSRQQSK 130 (846)
T ss_pred eeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeE--ecCCcceeEEeccchhhhhhh
Confidence 35567777776666555 999999999999999999988877766 45678999999997 1236
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCC
Q 005502 109 LVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS 188 (693)
Q Consensus 109 ~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~ 188 (693)
.+++|+.-| +.++.-+-...+ ..+ ....-.++|.++.|. +++||=++.+ -|++||+.+.+....+..
T Consensus 131 ~fv~GG~ag-lvL~er~wlgnk-------~~v-~l~~~eG~I~~i~W~---g~lIAWand~-Gv~vyd~~~~~~l~~i~~ 197 (846)
T KOG2066|consen 131 QFVSGGMAG-LVLSERNWLGNK-------DSV-VLSEGEGPIHSIKWR---GNLIAWANDD-GVKVYDTPTRQRLTNIPP 197 (846)
T ss_pred heeecCcce-EEEehhhhhcCc-------cce-eeecCccceEEEEec---CcEEEEecCC-CcEEEeccccceeeccCC
Confidence 899999888 766654322110 112 345567899999995 4677655554 578999988764422211
Q ss_pred CCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCC
Q 005502 189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (693)
Q Consensus 189 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~ 247 (693)
.+. .+........+.|.+. ..|+.|-. .+|+|..++.
T Consensus 198 p~~-------------------~~R~e~fpphl~W~~~--~~LVIGW~-d~v~i~~I~~ 234 (846)
T KOG2066|consen 198 PSQ-------------------SVRPELFPPHLHWQDE--DRLVIGWG-DSVKICSIKK 234 (846)
T ss_pred CCC-------------------CCCcccCCCceEecCC--CeEEEecC-CeEEEEEEec
Confidence 110 0011122345778875 46777755 4788988883
No 342
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.10 E-value=0.00013 Score=80.86 Aligned_cols=239 Identities=14% Similarity=0.145 Sum_probs=148.8
Q ss_pred hccccceEEeccCCCcEEEEEECCCC------------CEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeC
Q 005502 37 VRRLSQERELEGHQGCVNAISWNSKG------------SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 104 (693)
Q Consensus 37 i~~l~~~~~l~gH~~~V~~l~~s~~g------------~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~ 104 (693)
..+++.++.+.-|...|+.+.|.|-. -+||++.-.|+|.|||...+..+..+ ..|..+|..++|.|.
T Consensus 42 s~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l-~~~~~~~qdl~W~~~ 120 (1062)
T KOG1912|consen 42 SRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWL-SHSNDSVQDLCWVPA 120 (1062)
T ss_pred hhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhh-cCCCcchhheeeeec
Confidence 35677788899999999999998721 26788888999999999988888888 688899999999987
Q ss_pred CCC--CEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCC
Q 005502 105 TSD--ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (693)
Q Consensus 105 ~~~--~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~ 182 (693)
.+. .+|++-....+|-+|+..++ .....+........++.+.|-++..|..-+..|.|.+-+.-....
T Consensus 121 rd~Srd~LlaIh~ss~lvLwntdtG----------~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~se 190 (1062)
T KOG1912|consen 121 RDDSRDVLLAIHGSSTLVLWNTDTG----------EKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSE 190 (1062)
T ss_pred cCcchheeEEecCCcEEEEEEccCC----------ceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCC
Confidence 533 36666677789999999875 345555544556677999998877777777778887777543332
Q ss_pred CCC------CCCCCcccceEEEeccCCceeeecCCCCC-cc--ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcc
Q 005502 183 CPP------AGSSHQECRNILLDLRCGAKRSLADPPKQ-TL--SLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS 253 (693)
Q Consensus 183 ~~~------~~~~~~~~~~~l~~~~~~~~~~l~~~~~~-~~--~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~ 253 (693)
... +.+.+.+..+.-....++ ......+.. .. ..-.++|+|...+.+.. ..-.-+.++|+.-...+..
T Consensus 191 p~~pgk~~qI~sd~Sdl~~lere~at~--ns~ts~~~sa~fity~a~faf~p~~rn~lfi-~~prellv~dle~~~~l~v 267 (1062)
T KOG1912|consen 191 PDVPGKEFQITSDHSDLAHLERETATG--NSTTSTPASAYFITYCAQFAFSPHWRNILFI-TFPRELLVFDLEYECCLAV 267 (1062)
T ss_pred CCCCceeEEEecCccchhhhhhhhhcc--ccccCCCcchhHHHHHHhhhcChhhhceEEE-EeccceEEEcchhhceeEE
Confidence 100 000000000000000000 000000000 00 12246778864444443 3456788999875433221
Q ss_pred cccCCCCCCcccccccCccccCCCCccceEEEEEcCCC--CEEEEEecCCcEEEEECCC
Q 005502 254 CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG--EEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg--~~L~sgs~Dg~V~lwDl~~ 310 (693)
.. .. .. .+.-+.+-|++ ..|++...||.+.+|--+.
T Consensus 268 vp--------------ie-----r~--~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 268 VP--------------IE-----RG--GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred EE--------------ec-----cC--CcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 11 00 01 13345566654 5788889999999997665
No 343
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.09 E-value=3.2e-05 Score=79.10 Aligned_cols=113 Identities=8% Similarity=-0.067 Sum_probs=92.2
Q ss_pred hhHHHHHHhh-hhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCC--
Q 005502 364 RMLVEIARNS-LEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS-- 440 (693)
Q Consensus 364 ~~lk~~gn~~-~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~-- 440 (693)
...-..+... ++.++ |.+|+..|.+.|+.+|+. ......+...|.+|+.. |++.+|+..+.++++..|++
T Consensus 143 ~~~Y~~A~~l~~~~~~-y~~Ai~af~~fl~~yP~s---~~a~~A~y~LG~~y~~~---g~~~~A~~~f~~vv~~yP~s~~ 215 (263)
T PRK10803 143 NTDYNAAIALVQDKSR-QDDAIVAFQNFVKKYPDS---TYQPNANYWLGQLNYNK---GKKDDAAYYFASVVKNYPKSPK 215 (263)
T ss_pred HHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHCcCC---cchHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHCCCCcc
Confidence 4445555555 66788 999999999999999876 33345677889999995 56999999999999988875
Q ss_pred -cchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHH
Q 005502 441 -FRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVEN 483 (693)
Q Consensus 441 -~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~ 483 (693)
..|+|++|.++..+|++++|.+.|+++++.+|+...+....++
T Consensus 216 ~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~r 259 (263)
T PRK10803 216 AADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKR 259 (263)
T ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 5688999999999999999999999999999998665443333
No 344
>PRK12370 invasion protein regulator; Provisional
Probab=98.06 E-value=9.5e-06 Score=92.74 Aligned_cols=92 Identities=14% Similarity=0.036 Sum_probs=83.6
Q ss_pred cCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhc
Q 005502 376 EGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLC 455 (693)
Q Consensus 376 ~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~KA~~r~a~al~~l~ 455 (693)
.++ +.+|+..+.+|++..|.. +..|..+|.+++.. |++.+|+..+.+||+++|++..+|+.+|.++..+|
T Consensus 317 ~~~-~~~A~~~~~~Al~ldP~~------~~a~~~lg~~~~~~---g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G 386 (553)
T PRK12370 317 QNA-MIKAKEHAIKATELDHNN------PQALGLLGLINTIH---SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAG 386 (553)
T ss_pred chH-HHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 345 889999999999999887 77888899998885 55999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHcccCCCCchh
Q 005502 456 KYKEALDFAIAAQCLDPSNSVM 477 (693)
Q Consensus 456 ~~~eA~~~~~~~~~~~p~~~~~ 477 (693)
++++|++.++++++++|.+...
T Consensus 387 ~~~eAi~~~~~Al~l~P~~~~~ 408 (553)
T PRK12370 387 QLEEALQTINECLKLDPTRAAA 408 (553)
T ss_pred CHHHHHHHHHHHHhcCCCChhh
Confidence 9999999999999999997543
No 345
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.05 E-value=0.00027 Score=78.09 Aligned_cols=165 Identities=15% Similarity=0.107 Sum_probs=93.1
Q ss_pred CCCcEEEEEECCCCCEEEEEeC-----CCcEEEEECCCC--cEEEEeccCCCcceEEEEEeeCCCCCEEEEEe-CCCcEE
Q 005502 49 HQGCVNAISWNSKGSLLISGSD-----DTHINVWSYSSR--KLLHSIETGHSANVFCTKFVPETSDELVVSGA-GDAEVR 120 (693)
Q Consensus 49 H~~~V~~l~~s~~g~~LaSgs~-----Dg~I~IWd~~~~--~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs-~Dg~V~ 120 (693)
..+......|+|||+.||..+. |-.+.+|++..+ .....+...+.+.....+|+|+ |+.|+..+ .++...
T Consensus 229 ~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPD--G~~Laf~s~~~g~~~ 306 (428)
T PRK01029 229 LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPD--GTRLVFVSNKDGRPR 306 (428)
T ss_pred CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCC--CCEEEEEECCCCCce
Confidence 3445557899999998886653 223455777653 1223332233344567899999 57666554 567666
Q ss_pred EEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEeCCCCCCCCCCCCCCcccceEEE
Q 005502 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILL 198 (693)
Q Consensus 121 vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg--~V~iwDlr~~~~~~~~~~~~~~~~~~l~ 198 (693)
+|.+...... .....+..+...+....|+|++..+++++..+| .|.+||+.+++..
T Consensus 307 ly~~~~~~~g-------~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~--------------- 364 (428)
T PRK01029 307 IYIMQIDPEG-------QSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY--------------- 364 (428)
T ss_pred EEEEECcccc-------cceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE---------------
Confidence 6655421100 112333334456778899995544444444333 5888888765411
Q ss_pred eccCCceeeecCCCCCccceEEEEEcCCCCcEEE-EEeC--CCcEEEEecCCCC
Q 005502 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLL-VGGS--DAFARLYDRRMLP 249 (693)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~La-tgs~--Dg~I~lwD~r~~~ 249 (693)
.+... ...+....|+|+ ++.|+ ++.. ...|++||+...+
T Consensus 365 --------~Lt~~---~~~~~~p~wSpD-G~~L~f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 365 --------QLTTS---PENKESPSWAID-SLHLVYSAGNSNESELYLISLITKK 406 (428)
T ss_pred --------EccCC---CCCccceEECCC-CCEEEEEECCCCCceEEEEECCCCC
Confidence 11111 123456889998 55555 4433 3568888887543
No 346
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.02 E-value=0.0009 Score=70.56 Aligned_cols=190 Identities=13% Similarity=0.113 Sum_probs=127.9
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCcEEEEeccC------CC-----cceEEEE-EeeCCCCCEEEEEeCCCcEEEEEcCC
Q 005502 59 NSKGSLLISGSDDTHINVWSYSSRKLLHSIETG------HS-----ANVFCTK-FVPETSDELVVSGAGDAEVRLFNLSR 126 (693)
Q Consensus 59 s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~------h~-----~~I~sl~-f~p~~~~~~l~sgs~Dg~V~vwdl~~ 126 (693)
+.+|+.++-. .-|.|.+||+.+.+.. .+..+ .. .+..-+. |++.+ |.+++..+. |...|.+...
T Consensus 275 nsDGkrIvFq-~~GdIylydP~td~le-kldI~lpl~rk~k~~k~~~pskyledfa~~~-Gd~ia~VSR-GkaFi~~~~~ 350 (668)
T COG4946 275 NSDGKRIVFQ-NAGDIYLYDPETDSLE-KLDIGLPLDRKKKQPKFVNPSKYLEDFAVVN-GDYIALVSR-GKAFIMRPWD 350 (668)
T ss_pred CCCCcEEEEe-cCCcEEEeCCCcCcce-eeecCCccccccccccccCHHHhhhhhccCC-CcEEEEEec-CcEEEECCCC
Confidence 3467766543 4477999998865432 22111 01 1111222 55554 789988886 7788777664
Q ss_pred CCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCC-cEEEEeCCCCCCCCCCCCCCcccceEEEeccCCce
Q 005502 127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (693)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg-~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (693)
+ ...-.+|...|+-..+.- .++-++.|..|| .|-++|.++++..
T Consensus 351 ~------------~~iqv~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e~k---------------------- 395 (668)
T COG4946 351 G------------YSIQVGKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGEVK---------------------- 395 (668)
T ss_pred C------------eeEEcCCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCceEE----------------------
Confidence 2 222335778888887776 455788899999 8999999886511
Q ss_pred eeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEE
Q 005502 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV 285 (693)
Q Consensus 206 ~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v 285 (693)
.....-..|.++..+|+ ++.++++.....+.++|+.++.+.. + ......-|+.+
T Consensus 396 ----r~e~~lg~I~av~vs~d-GK~~vvaNdr~el~vididngnv~~--------------i-------dkS~~~lItdf 449 (668)
T COG4946 396 ----RIEKDLGNIEAVKVSPD-GKKVVVANDRFELWVIDIDNGNVRL--------------I-------DKSEYGLITDF 449 (668)
T ss_pred ----EeeCCccceEEEEEcCC-CcEEEEEcCceEEEEEEecCCCeeE--------------e-------cccccceeEEE
Confidence 11122356889999997 7899999999999999999875321 1 01112249999
Q ss_pred EEcCCCCEEEEEecCC----cEEEEECCCCCc
Q 005502 286 TFSPNGEEVLLSYSGE----HVYLMDVNHAGG 313 (693)
Q Consensus 286 ~fspdg~~L~sgs~Dg----~V~lwDl~~~~~ 313 (693)
+|||++++|+-+--+| .|++||+.+++.
T Consensus 450 ~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 450 DWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred EEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence 9999999999877665 799999999653
No 347
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.01 E-value=0.00027 Score=84.60 Aligned_cols=218 Identities=17% Similarity=0.197 Sum_probs=133.9
Q ss_pred CCCcEEEEEECCCCCEEEEEeC---C---CcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeC---CCcE
Q 005502 49 HQGCVNAISWNSKGSLLISGSD---D---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEV 119 (693)
Q Consensus 49 H~~~V~~l~~s~~g~~LaSgs~---D---g~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~---Dg~V 119 (693)
+.+.-..|+|-.||.++|+.+- . +.|+||+-+ |....+- ..-.+--.+++|.|. |++||+.-. ...|
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stS-E~v~gLe~~l~WrPs--G~lIA~~q~~~~~~~V 283 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTS-EPVDGLEGALSWRPS--GNLIASSQRLPDRHDV 283 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecc-ccCCCccCCccCCCC--CCEEEEEEEcCCCcEE
Confidence 5556678999999999998874 2 579999975 5544443 233444467899999 789988765 2345
Q ss_pred EEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEe
Q 005502 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (693)
Q Consensus 120 ~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~ 199 (693)
.+|.-+-.. .. +....+......|..|+|++ ++.+|+..-.|. |.+|-..+-+ |.
T Consensus 284 vFfErNGLr-hg------eF~l~~~~~~~~v~~l~Wn~-ds~iLAv~~~~~-vqLWt~~NYH----------------WY 338 (928)
T PF04762_consen 284 VFFERNGLR-HG------EFTLRFDPEEEKVIELAWNS-DSEILAVWLEDR-VQLWTRSNYH----------------WY 338 (928)
T ss_pred EEEecCCcE-ee------eEecCCCCCCceeeEEEECC-CCCEEEEEecCC-ceEEEeeCCE----------------EE
Confidence 555433211 00 11111223456899999999 678888877655 9999876543 21
Q ss_pred ccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecC----CCCC------------------CcccccC
Q 005502 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR----MLPP------------------LTSCQKR 257 (693)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r----~~~~------------------~~~~~~~ 257 (693)
++. .+... ....+..+.|+|.++..|.+.+.+|.+..++.. .... +..+...
T Consensus 339 LKq----ei~~~--~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a 412 (928)
T PF04762_consen 339 LKQ----EIRFS--SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRA 412 (928)
T ss_pred EEE----EEEcc--CCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEeccccc
Confidence 110 11111 111233488999888888888887777665542 1110 0111111
Q ss_pred -CCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCC
Q 005502 258 -MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 258 -~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~ 310 (693)
.+||.|...+ .-..+|..++|++++..+++-..||.|.+|....
T Consensus 413 ~VPPPMs~~~l---------~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 413 VVPPPMSSYEL---------ELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred CCCchHhceEE---------cCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence 1222222221 1123699999999998899999999999998544
No 348
>PRK12370 invasion protein regulator; Provisional
Probab=97.98 E-value=4.7e-05 Score=87.08 Aligned_cols=108 Identities=7% Similarity=-0.063 Sum_probs=91.8
Q ss_pred CcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCC
Q 005502 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS 438 (693)
Q Consensus 359 ~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp 438 (693)
.+....-+...|.-+...|+ |.+|+..|.+|++..|+. +..|.+.|.+|+.. |++.+|+..+.+|++++|
T Consensus 334 dP~~~~a~~~lg~~~~~~g~-~~~A~~~~~~Al~l~P~~------~~a~~~lg~~l~~~---G~~~eAi~~~~~Al~l~P 403 (553)
T PRK12370 334 DHNNPQALGLLGLINTIHSE-YIVGSLLFKQANLLSPIS------ADIKYYYGWNLFMA---GQLEEALQTINECLKLDP 403 (553)
T ss_pred CCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHC---CCHHHHHHHHHHHHhcCC
Confidence 34444455566777778899 999999999999999887 77889999999995 559999999999999999
Q ss_pred CCcchhhhHHHHHHHhccHHHHHHHHHHHcccC-CCCch
Q 005502 439 SSFRAHLYMSEALEQLCKYKEALDFAIAAQCLD-PSNSV 476 (693)
Q Consensus 439 ~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~-p~~~~ 476 (693)
.+..+++.++.+++.+|++++|++.++++++.. |++..
T Consensus 404 ~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~ 442 (553)
T PRK12370 404 TRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPI 442 (553)
T ss_pred CChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHH
Confidence 999888888888999999999999999998775 65554
No 349
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.98 E-value=0.00097 Score=68.55 Aligned_cols=201 Identities=15% Similarity=0.166 Sum_probs=121.3
Q ss_pred CCcEEEEECCCCc--EEEEeccCCCcceEEEEEeeCCCCCEEEEEeCC---CcEEEEEcCCCCCCCCCCCCCCCceeecc
Q 005502 71 DTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQC 145 (693)
Q Consensus 71 Dg~I~IWd~~~~~--~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~D---g~V~vwdl~~~~~~~~~~~~~~~~~~~~~ 145 (693)
+.-|.+|++.+.. .-......+.++++-|+|+|+ .+.|.++..+ |.|-.|.+...+++. ..+.....
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~--~~~LY~v~~~~~~ggvaay~iD~~~G~L------t~ln~~~~ 86 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPD--QRHLYVVNEPGEEGGVAAYRIDPDDGRL------TFLNRQTL 86 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCC--CCEEEEEEecCCcCcEEEEEEcCCCCeE------EEeecccc
Confidence 4669999988432 211111367789999999999 4788887654 778888888644432 11111111
Q ss_pred CCCCeEEEEEecCCCcEEEEEe-CCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEc
Q 005502 146 HTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS 224 (693)
Q Consensus 146 h~~~V~~l~~sp~~~~~l~Sgs-~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~s 224 (693)
-..+...+++++++ .+++++. .-|.|.++-++..-.+. .....+.....+. ........+.+..+.
T Consensus 87 ~g~~p~yvsvd~~g-~~vf~AnY~~g~v~v~p~~~dG~l~-------~~v~~~~h~g~~p-----~~rQ~~~h~H~a~~t 153 (346)
T COG2706 87 PGSPPCYVSVDEDG-RFVFVANYHSGSVSVYPLQADGSLQ-------PVVQVVKHTGSGP-----HERQESPHVHSANFT 153 (346)
T ss_pred CCCCCeEEEECCCC-CEEEEEEccCceEEEEEcccCCccc-------cceeeeecCCCCC-----CccccCCccceeeeC
Confidence 22334789999944 4555554 56899999987642210 0011111111110 011112237788999
Q ss_pred CCCCcEEEEEe-CCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEec-CCc
Q 005502 225 STRPHLLLVGG-SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEH 302 (693)
Q Consensus 225 p~~~~~Latgs-~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~-Dg~ 302 (693)
|+ +++|++.+ .--.|.+|++..++....- +..+ ..+..-..|.|+|++++..+... +++
T Consensus 154 P~-~~~l~v~DLG~Dri~~y~~~dg~L~~~~--------------~~~v----~~G~GPRHi~FHpn~k~aY~v~EL~st 214 (346)
T COG2706 154 PD-GRYLVVPDLGTDRIFLYDLDDGKLTPAD--------------PAEV----KPGAGPRHIVFHPNGKYAYLVNELNST 214 (346)
T ss_pred CC-CCEEEEeecCCceEEEEEcccCcccccc--------------cccc----CCCCCcceEEEcCCCcEEEEEeccCCE
Confidence 98 56776665 3457999999865432111 1111 11223578999999999988887 999
Q ss_pred EEEEECCCC
Q 005502 303 VYLMDVNHA 311 (693)
Q Consensus 303 V~lwDl~~~ 311 (693)
|-+|..+..
T Consensus 215 V~v~~y~~~ 223 (346)
T COG2706 215 VDVLEYNPA 223 (346)
T ss_pred EEEEEEcCC
Confidence 999999883
No 350
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.98 E-value=9.4e-05 Score=73.01 Aligned_cols=127 Identities=13% Similarity=0.093 Sum_probs=97.8
Q ss_pred hhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCc
Q 005502 362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSF 441 (693)
Q Consensus 362 ~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~ 441 (693)
....+-..|...+..|+ |.+|++.|++.+...|.. +.........|.+|++. ||+..|+.-+.+-++..|++.
T Consensus 4 ~~~~lY~~a~~~~~~g~-y~~Ai~~f~~l~~~~P~s---~~a~~A~l~la~a~y~~---~~y~~A~~~~~~fi~~yP~~~ 76 (203)
T PF13525_consen 4 TAEALYQKALEALQQGD-YEEAIKLFEKLIDRYPNS---PYAPQAQLMLAYAYYKQ---GDYEEAIAAYERFIKLYPNSP 76 (203)
T ss_dssp -HHHHHHHHHHHHHCT--HHHHHHHHHHHHHH-TTS---TTHHHHHHHHHHHHHHT---T-HHHHHHHHHHHHHH-TT-T
T ss_pred CHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCCCC---hHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHCCCCc
Confidence 35677889999999999 999999999999998765 34345667889999995 569999999999999999987
Q ss_pred c---hhhhHHHHHHHhcc-----------HHHHHHHHHHHcccCCCCchh---HHHHHHHHHHHHHHHHhh
Q 005502 442 R---AHLYMSEALEQLCK-----------YKEALDFAIAAQCLDPSNSVM---AEKVENIKKHIAAAETEK 495 (693)
Q Consensus 442 K---A~~r~a~al~~l~~-----------~~eA~~~~~~~~~~~p~~~~~---~~~~~~l~~~i~~~~~~~ 495 (693)
+ |+|.+|.+++.+.+ ..+|+..++.++...|+..-+ .+.+..|+..+.+.+...
T Consensus 77 ~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~i 147 (203)
T PF13525_consen 77 KADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYI 147 (203)
T ss_dssp THHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 89999999877643 458999999999999997543 455667777776666543
No 351
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.97 E-value=0.00037 Score=74.71 Aligned_cols=74 Identities=14% Similarity=0.274 Sum_probs=52.9
Q ss_pred CCCcEEEEEECCCCCEEEEEeC-----------CCcEEEEECCCCcEEEEeccC-CCcceE-EEEEeeCCCCCEEEEEeC
Q 005502 49 HQGCVNAISWNSKGSLLISGSD-----------DTHINVWSYSSRKLLHSIETG-HSANVF-CTKFVPETSDELVVSGAG 115 (693)
Q Consensus 49 H~~~V~~l~~s~~g~~LaSgs~-----------Dg~I~IWd~~~~~~~~~l~~~-h~~~I~-sl~f~p~~~~~~l~sgs~ 115 (693)
|. .|.-+.|||+.++|+|=|. -..++|||+.+|...+.+... ....++ -++|+.+ +.++|--..
T Consensus 249 Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~D--dKy~Arm~~ 325 (698)
T KOG2314|consen 249 HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHD--DKYFARMTG 325 (698)
T ss_pred CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccC--CceeEEecc
Confidence 44 4889999999999999763 156899999999888877321 112222 3578887 677776555
Q ss_pred CCcEEEEEcCC
Q 005502 116 DAEVRLFNLSR 126 (693)
Q Consensus 116 Dg~V~vwdl~~ 126 (693)
.+|.||+...
T Consensus 326 -~sisIyEtps 335 (698)
T KOG2314|consen 326 -NSISIYETPS 335 (698)
T ss_pred -ceEEEEecCc
Confidence 6788888763
No 352
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.96 E-value=9.4e-05 Score=75.00 Aligned_cols=128 Identities=12% Similarity=-0.012 Sum_probs=101.5
Q ss_pred hhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCc
Q 005502 362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSF 441 (693)
Q Consensus 362 ~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~ 441 (693)
....+-..|...++.|+ |..|++.|.+++...|.. +.......+.|.+|++. +|+..|+.-..+.++++|++.
T Consensus 31 ~~~~~Y~~A~~~~~~g~-y~~Ai~~f~~l~~~yP~s---~~a~~a~l~la~ayy~~---~~y~~A~~~~e~fi~~~P~~~ 103 (243)
T PRK10866 31 PPSEIYATAQQKLQDGN-WKQAITQLEALDNRYPFG---PYSQQVQLDLIYAYYKN---ADLPLAQAAIDRFIRLNPTHP 103 (243)
T ss_pred CHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHhCcCCC
Confidence 45667788999999999 999999999999998865 33333456889999995 559999999999999999986
Q ss_pred c---hhhhHHHHHHHhcc------------------HHHHHHHHHHHcccCCCCc---hhHHHHHHHHHHHHHHHHhhc
Q 005502 442 R---AHLYMSEALEQLCK------------------YKEALDFAIAAQCLDPSNS---VMAEKVENIKKHIAAAETEKN 496 (693)
Q Consensus 442 K---A~~r~a~al~~l~~------------------~~eA~~~~~~~~~~~p~~~---~~~~~~~~l~~~i~~~~~~~~ 496 (693)
+ |+|.+|.++..+++ ..+|++.+++++..+|+.. .+.+.+..++.++.+.+....
T Consensus 104 ~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia 182 (243)
T PRK10866 104 NIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVA 182 (243)
T ss_pred chHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 78999999866651 3578899999999999864 334556677777777665443
No 353
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=7.7e-05 Score=77.98 Aligned_cols=221 Identities=12% Similarity=0.068 Sum_probs=141.5
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC--C-cEEEEeccCCCcceEEEEEeeCCCCCEEEEEeC-CCcEEEEEc
Q 005502 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSS--R-KLLHSIETGHSANVFCTKFVPETSDELVVSGAG-DAEVRLFNL 124 (693)
Q Consensus 49 H~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~--~-~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~-Dg~V~vwdl 124 (693)
|.+.|+-+.-. -.+++.+++.||.++.|.... + +.+..+ ..|.+.|.+++.+-+ +-++.|++. |..++++|+
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhF-raHL~~I~sl~~S~d--g~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHF-RAHLGVILSLAVSYD--GWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhh-HHHHHHHHhhhcccc--ceeEeeccCcccceeEEEe
Confidence 77777776443 567999999999999998653 2 233333 578899999999888 688999787 999999999
Q ss_pred CCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCC--c-EE-EEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEec
Q 005502 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP--H-VV-WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (693)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~--~-~l-~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~ 200 (693)
....- +..++ -......+.|....+ . .+ ++...+|.+.++|-+.....
T Consensus 84 En~Dm----------inmiK-L~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q----------------- 135 (558)
T KOG0882|consen 84 ENFDM----------INMIK-LVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ----------------- 135 (558)
T ss_pred eccch----------hhhcc-cccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCc-----------------
Confidence 85321 11111 111112233322112 1 23 33346789999997654311
Q ss_pred cCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCC-CCCCcc-cccCCCCCCcccccccCccccCCCC
Q 005502 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTS-CQKRMSPPPCVNYFCPMHLSEHGRS 278 (693)
Q Consensus 201 ~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~ 278 (693)
.......|..+|.++.++|. +..+++....|.|..|...- .+.... +....+...-+..+ ...
T Consensus 136 ------~~~fkklH~sPV~~i~y~qa-~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f--------~K~ 200 (558)
T KOG0882|consen 136 ------DGYFKKLHFSPVKKIRYNQA-GDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGF--------PKA 200 (558)
T ss_pred ------cceecccccCceEEEEeecc-ccceeeccccceeEeecCCCcccCccccccccccccchhhcc--------ccc
Confidence 11222346778999999997 68899999999999998762 111000 10001100001001 111
Q ss_pred ccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceE
Q 005502 279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM 316 (693)
Q Consensus 279 ~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~ 316 (693)
....+++.|+|+|..+.+-+.|..|++|++.++.....
T Consensus 201 Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqe 238 (558)
T KOG0882|consen 201 KTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQE 238 (558)
T ss_pred ccCccceEEccccCcccccCcccEEEEEEeccchhhhh
Confidence 22478999999999999999999999999999764443
No 354
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.95 E-value=1e-05 Score=64.42 Aligned_cols=59 Identities=20% Similarity=0.180 Sum_probs=54.0
Q ss_pred cCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhH
Q 005502 420 KNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA 478 (693)
Q Consensus 420 ~~d~~~A~~Dc~~Al~ldp~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~ 478 (693)
.|++..|+.-+.++++.+|++..+++.+|+|+.++|++++|.+.+.++...+|++..+.
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 46799999999999999999999999999999999999999999999999999875544
No 355
>PLN02789 farnesyltranstransferase
Probab=97.94 E-value=3.8e-05 Score=80.93 Aligned_cols=90 Identities=14% Similarity=0.073 Sum_probs=50.9
Q ss_pred hhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhccHHH
Q 005502 380 PYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKE 459 (693)
Q Consensus 380 y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~KA~~r~a~al~~l~~~~e 459 (693)
+.+|+..+.++|+..|++ ...+.+|+.++.+++. ..+.+++.-+.+||++||.+..|+..|+-++..++++++
T Consensus 88 l~eeL~~~~~~i~~npkn------yqaW~~R~~~l~~l~~-~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~e 160 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKN------YQIWHHRRWLAEKLGP-DAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWED 160 (320)
T ss_pred HHHHHHHHHHHHHHCCcc------hHHhHHHHHHHHHcCc-hhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHH
Confidence 455555555555555544 4455556555554321 112344555556666666666666666666666666666
Q ss_pred HHHHHHHHcccCCCCch
Q 005502 460 ALDFAIAAQCLDPSNSV 476 (693)
Q Consensus 460 A~~~~~~~~~~~p~~~~ 476 (693)
|++++.++++++|.|..
T Consensus 161 eL~~~~~~I~~d~~N~s 177 (320)
T PLN02789 161 ELEYCHQLLEEDVRNNS 177 (320)
T ss_pred HHHHHHHHHHHCCCchh
Confidence 66666666666666544
No 356
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.92 E-value=1.5e-06 Score=87.81 Aligned_cols=116 Identities=8% Similarity=-0.125 Sum_probs=101.6
Q ss_pred hhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcch
Q 005502 364 RMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRA 443 (693)
Q Consensus 364 ~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~KA 443 (693)
-.++..|+.+++.|. |..||++|...+.....+ +.|-.| +.+|+|... +..|+.||.+++-++|.+.++
T Consensus 235 l~~K~~G~~Fsk~~~-~~~~i~~~~~~~A~~~~~------~~L~~~-~~~~~KI~~---~~~~~~~~~~~~~~~~s~~~~ 303 (536)
T KOG4648|consen 235 LPIKKPGYKFSKKAM-RSVPVVDVVSPRATIDDS------NQLRIS-DEDIDKIFN---SNCGIIEEVKKTNPKPTPMPD 303 (536)
T ss_pred ccccCcchhhhhhhc-cccceeEeeccccccCcc------ccCccc-HHHHHHHhh---cchhHHHHHHhcCCCCCcCcc
Confidence 346788999999999 999999999888765544 445556 999999876 889999999999999999999
Q ss_pred hhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHHHHHHHHH
Q 005502 444 HLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAA 490 (693)
Q Consensus 444 ~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l~~~i~~ 490 (693)
.-|++.|..-+|...||..++++++.+.|.+....+.+.+++.+|-.
T Consensus 304 ~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~~~~sr~~~~ii~ 350 (536)
T KOG4648|consen 304 TSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETPKETETRKDTKIVP 350 (536)
T ss_pred cCCCchhHHHHhhhhhcCcchhheeeeccccccchhhhhhhcccccc
Confidence 99999999999999999999999999999999988888777776644
No 357
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.92 E-value=0.0037 Score=63.56 Aligned_cols=216 Identities=12% Similarity=0.055 Sum_probs=128.0
Q ss_pred EEEECC-CCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCC
Q 005502 55 AISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD 133 (693)
Q Consensus 55 ~l~~s~-~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~ 133 (693)
+..|.+ ++.++++--..+.|..|+..+++... +.... ..++++... +..|+.+.. +.+.++|+.....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~---~~G~~~~~~--~g~l~v~~~-~~~~~~d~~~g~~---- 72 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG---PNGMAFDRP--DGRLYVADS-GGIAVVDPDTGKV---- 72 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS---EEEEEEECT--TSEEEEEET-TCEEEEETTTTEE----
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC---CceEEEEcc--CCEEEEEEc-CceEEEecCCCcE----
Confidence 578988 78888888788999999998875543 21122 777888833 245555555 4456668875421
Q ss_pred CCCCCCceee--cc-CCCCeEEEEEecCCCcEEEEEeCC--------CcEEEEeCCCCCCCCCCCCCCcccceEEEeccC
Q 005502 134 DNAITPSALY--QC-HTRRVKKLAVEVGNPHVVWSASED--------GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (693)
Q Consensus 134 ~~~~~~~~~~--~~-h~~~V~~l~~sp~~~~~l~Sgs~D--------g~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~ 202 (693)
..+... .. .....+.+++.| +++++++.... |.|..++.. ++. ..+.
T Consensus 73 ----~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~------------~~~~---- 130 (246)
T PF08450_consen 73 ----TVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV------------TVVA---- 130 (246)
T ss_dssp ----EEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEE------------EEEE----
T ss_pred ----EEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeE------------EEEe----
Confidence 222222 11 345788999999 55666665543 446566654 210 1111
Q ss_pred CceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC-CcccccCCCCCCcccccccCccccCCCCccc
Q 005502 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP-LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH 281 (693)
Q Consensus 203 ~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 281 (693)
......+.|+|+|++..++++-+..+.|..|++..... +.. ...+. .... .. ..
T Consensus 131 ----------~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~----------~~~~~--~~~~--~~-g~ 185 (246)
T PF08450_consen 131 ----------DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSN----------RRVFI--DFPG--GP-GY 185 (246)
T ss_dssp ----------EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEE----------EEEEE--E-SS--SS-CE
T ss_pred ----------cCcccccceEECCcchheeecccccceeEEEeccccccceee----------eeeEE--EcCC--CC-cC
Confidence 01234578999998545566777889999999864321 110 00110 0000 00 13
Q ss_pred eEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEe
Q 005502 282 LTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSF 329 (693)
Q Consensus 282 V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~ 329 (693)
.-.++++.+|+..++....+.|.++|.. ++....+..+...+..++|
T Consensus 186 pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 186 PDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp EEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred CCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence 6789999999988888889999999988 5544444444356666666
No 358
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.91 E-value=0.00014 Score=72.00 Aligned_cols=105 Identities=18% Similarity=0.079 Sum_probs=80.4
Q ss_pred hHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchh
Q 005502 365 MLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAH 444 (693)
Q Consensus 365 ~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~KA~ 444 (693)
.+...|.-.+..|+ |.+|+..|.+++..... ......+.+.+.+|.+. |++..|+..+.++++++|.+..++
T Consensus 101 ~~~~~~~~~~~~g~-~~~A~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~ 172 (234)
T TIGR02521 101 VLNNYGTFLCQQGK-YEQAMQQFEQAIEDPLY----PQPARSLENAGLCALKA---GDFDKAEKYLTRALQIDPQRPESL 172 (234)
T ss_pred HHHHHHHHHHHccc-HHHHHHHHHHHHhcccc----ccchHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCcCChHHH
Confidence 34445566666777 77888888877764221 11244677888888885 559999999999999999999999
Q ss_pred hhHHHHHHHhccHHHHHHHHHHHcccCCCCchh
Q 005502 445 LYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 477 (693)
Q Consensus 445 ~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~ 477 (693)
+.+|.++..+|++++|.+.+++++.+.|.+...
T Consensus 173 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 205 (234)
T TIGR02521 173 LELAELYYLRGQYKDARAYLERYQQTYNQTAES 205 (234)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999999999999998887765443
No 359
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.91 E-value=0.0018 Score=69.01 Aligned_cols=244 Identities=14% Similarity=0.138 Sum_probs=142.9
Q ss_pred CCcEEEEEECCCCCEEEEEeCCC---------------cEEEEECCCCcEEEEeccCCCcc--eE-EEEEeeCCCCCEEE
Q 005502 50 QGCVNAISWNSKGSLLISGSDDT---------------HINVWSYSSRKLLHSIETGHSAN--VF-CTKFVPETSDELVV 111 (693)
Q Consensus 50 ~~~V~~l~~s~~g~~LaSgs~Dg---------------~I~IWd~~~~~~~~~l~~~h~~~--I~-sl~f~p~~~~~~l~ 111 (693)
...|.-+.|+|.+++|.|-+.-+ .+.|||..++..+..+ .+-..+ .+ -++|+-+ +.+++
T Consensus 71 ~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf-~~~~q~~~~Wp~~k~s~~--D~y~A 147 (561)
T COG5354 71 HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSF-NGISQPYLGWPVLKFSID--DKYVA 147 (561)
T ss_pred cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeec-cccCCcccccceeeeeec--chhhh
Confidence 34688999999999999976544 4999999999988887 343333 55 6788877 45555
Q ss_pred EEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecC-CCcEEEE-----EeCCCcEEEEeCCCCCCCCC
Q 005502 112 SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-NPHVVWS-----ASEDGTLRQHDFRQGSSCPP 185 (693)
Q Consensus 112 sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~~l~S-----gs~Dg~V~iwDlr~~~~~~~ 185 (693)
=. ....++|+++... -. ..+.+.+. ...|...+|+|. +...|+. .+.++.+++|.+........
T Consensus 148 Rv-v~~sl~i~e~t~n-~~------~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~t 217 (561)
T COG5354 148 RV-VGSSLYIHEITDN-IE------EHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVT 217 (561)
T ss_pred hh-ccCeEEEEecCCc-cc------cCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeee
Confidence 44 3467999997321 11 02222222 356788888885 2223332 35678899998875432210
Q ss_pred CC-------------CCCcccc-----------------eEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEE--
Q 005502 186 AG-------------SSHQECR-----------------NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV-- 233 (693)
Q Consensus 186 ~~-------------~~~~~~~-----------------~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Lat-- 233 (693)
.. .+..-|. ..|+.++.... ........+|...+|+|.. ..+++
T Consensus 218 k~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i---~V~~~~~~pVhdf~W~p~S-~~F~vi~ 293 (561)
T COG5354 218 KNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI---PVEKDLKDPVHDFTWEPLS-SRFAVIS 293 (561)
T ss_pred eeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc---ceeccccccceeeeecccC-CceeEEe
Confidence 00 0000000 11111111110 0011235689999999974 44444
Q ss_pred EeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecC---CcEEEEECCC
Q 005502 234 GGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---EHVYLMDVNH 310 (693)
Q Consensus 234 gs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~D---g~V~lwDl~~ 310 (693)
|-.+..+.++|++.. +..+.|.. .=+.+.|+|.+++++.++-| |.|-+||..+
T Consensus 294 g~~pa~~s~~~lr~N---------------l~~~~Pe~---------~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~ 349 (561)
T COG5354 294 GYMPASVSVFDLRGN---------------LRFYFPEQ---------KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAG 349 (561)
T ss_pred cccccceeecccccc---------------eEEecCCc---------ccccccccCcccEEEEecCCccccceEEeccCC
Confidence 357889999999853 11111111 13458899999999987764 6899999887
Q ss_pred CCcceEEeecCCCceeEEeccCCCc
Q 005502 311 AGGRAMRYTVGDASKIMSFTPTLNG 335 (693)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~p~~~g 335 (693)
.-.....+ .+-......|+|+..=
T Consensus 350 rf~~~~~~-~~~n~s~~~wspd~qF 373 (561)
T COG5354 350 RFKVAGAF-NGLNTSYCDWSPDGQF 373 (561)
T ss_pred ceEEEEEe-ecCCceEeeccCCceE
Confidence 43222122 2233444557776443
No 360
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.89 E-value=7.2e-05 Score=89.89 Aligned_cols=95 Identities=15% Similarity=0.144 Sum_probs=84.2
Q ss_pred hhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHHHH
Q 005502 373 SLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALE 452 (693)
Q Consensus 373 ~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~KA~~r~a~al~ 452 (693)
....|+ |.+|+..|.++++..|. ...|.|.|.++.++ |++.+|+..+.+|++++|++..+++.+|.+|.
T Consensus 586 l~~~Gr-~~eAl~~~~~AL~l~P~-------~~a~~~LA~~l~~l---G~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~ 654 (987)
T PRK09782 586 RYIPGQ-PELALNDLTRSLNIAPS-------ANAYVARATIYRQR---HNVPAAVSDLRAALELEPNNSNYQAALGYALW 654 (987)
T ss_pred HHhCCC-HHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHC---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 334488 99999999999987763 46789999999996 55999999999999999999999999999999
Q ss_pred HhccHHHHHHHHHHHcccCCCCchhH
Q 005502 453 QLCKYKEALDFAIAAQCLDPSNSVMA 478 (693)
Q Consensus 453 ~l~~~~eA~~~~~~~~~~~p~~~~~~ 478 (693)
.+|++++|++.++++++++|++..+.
T Consensus 655 ~~G~~eeAi~~l~~AL~l~P~~~~a~ 680 (987)
T PRK09782 655 DSGDIAQSREMLERAHKGLPDDPALI 680 (987)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999999999999987654
No 361
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.89 E-value=5e-05 Score=69.35 Aligned_cols=86 Identities=20% Similarity=0.127 Sum_probs=75.4
Q ss_pred HhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHH
Q 005502 385 EACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFA 464 (693)
Q Consensus 385 ~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~KA~~r~a~al~~l~~~~eA~~~~ 464 (693)
+.|.++|...|.. ...+.++|.++++. |++.+|+....++++++|.+..+++++|.++..+|++++|.+.+
T Consensus 4 ~~~~~~l~~~p~~------~~~~~~~a~~~~~~---~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 74 (135)
T TIGR02552 4 ATLKDLLGLDSEQ------LEQIYALAYNLYQQ---GRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAY 74 (135)
T ss_pred hhHHHHHcCChhh------HHHHHHHHHHHHHc---ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888877766 55678899999986 45999999999999999999999999999999999999999999
Q ss_pred HHHcccCCCCchhHH
Q 005502 465 IAAQCLDPSNSVMAE 479 (693)
Q Consensus 465 ~~~~~~~p~~~~~~~ 479 (693)
+++++++|.+....-
T Consensus 75 ~~~~~~~p~~~~~~~ 89 (135)
T TIGR02552 75 ALAAALDPDDPRPYF 89 (135)
T ss_pred HHHHhcCCCChHHHH
Confidence 999999999866543
No 362
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.88 E-value=5.8e-05 Score=87.99 Aligned_cols=99 Identities=14% Similarity=0.097 Sum_probs=74.2
Q ss_pred HHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHH----HHHhHhHhhccCCCCcchhh
Q 005502 370 ARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQM----AIRDCYNARRIDSSSFRAHL 445 (693)
Q Consensus 370 gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~----A~~Dc~~Al~ldp~~~KA~~ 445 (693)
+..++..|+ |.+|+..|.+++...|.. ...+.+.|.+|.+++. +.+ |+..+.+|++++|++..+++
T Consensus 219 ~~~l~~~g~-~~eA~~~~~~al~~~p~~------~~~~~~Lg~~l~~~G~---~~eA~~~A~~~~~~Al~l~P~~~~a~~ 288 (656)
T PRK15174 219 VDTLCAVGK-YQEAIQTGESALARGLDG------AALRRSLGLAYYQSGR---SREAKLQAAEHWRHALQFNSDNVRIVT 288 (656)
T ss_pred HHHHHHCCC-HHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCC---chhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 445566777 888888888888877665 5667777777777544 553 67788888888888888888
Q ss_pred hHHHHHHHhccHHHHHHHHHHHcccCCCCchhH
Q 005502 446 YMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA 478 (693)
Q Consensus 446 r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~ 478 (693)
.+|.++..+|++++|+..+++++.++|.+..+.
T Consensus 289 ~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~ 321 (656)
T PRK15174 289 LYADALIRTGQNEKAIPLLQQSLATHPDLPYVR 321 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 888888888888888888888888888776543
No 363
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.88 E-value=1e-05 Score=87.82 Aligned_cols=225 Identities=20% Similarity=0.283 Sum_probs=135.6
Q ss_pred ccCCCcEEEEEECC-CCCEEEEEe----CCCcEEEEECCCC--cEE--EEeccCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 005502 47 EGHQGCVNAISWNS-KGSLLISGS----DDTHINVWSYSSR--KLL--HSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (693)
Q Consensus 47 ~gH~~~V~~l~~s~-~g~~LaSgs----~Dg~I~IWd~~~~--~~~--~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg 117 (693)
.+|....++++|++ |.+.||.|- .|..+.|||+.++ .+. ..+..+......+++|..+ ..++.+|....
T Consensus 99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd--~klvlaGm~sr 176 (783)
T KOG1008|consen 99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRD--TKLVLAGMTSR 176 (783)
T ss_pred ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccC--cchhhcccccc
Confidence 46778899999998 567788774 4567999999876 111 1221224445668999865 57889999999
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe-CCCCCCCCCCCCCCcccceE
Q 005502 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD-FRQGSSCPPAGSSHQECRNI 196 (693)
Q Consensus 118 ~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwD-lr~~~~~~~~~~~~~~~~~~ 196 (693)
.|+++|++... .....-.+..|..+.+.|-.++++++-. ||.|-+|| .+.-+.+
T Consensus 177 ~~~ifdlRqs~-----------~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienp------------- 231 (783)
T KOG1008|consen 177 SVHIFDLRQSL-----------DSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENP------------- 231 (783)
T ss_pred hhhhhhhhhhh-----------hhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccH-------------
Confidence 99999999532 2222224556778888887788886554 99999999 4443321
Q ss_pred EEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCC-CcEEEEecCCCCCCcccccCCCCCCcccccccCccccC
Q 005502 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (693)
Q Consensus 197 l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~D-g~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (693)
+..+ +.........+..++|+|..+.++++...| ++|++||+..-........ ...+.+..+......
T Consensus 232 l~~i-------~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn----~~~~~~~s~~~~q~~ 300 (783)
T KOG1008|consen 232 LQII-------LRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANN----SVFVNYESKYPVQPN 300 (783)
T ss_pred HHHH-------hhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccc----cceeeeccccccccc
Confidence 0000 011111223578999999988888887765 7899999874321111000 011111111111111
Q ss_pred CCCccceEEEEEcCCC--CEEEEEecCCcEEEEECCC
Q 005502 276 GRSSLHLTHVTFSPNG--EEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 276 ~h~~~~V~~v~fspdg--~~L~sgs~Dg~V~lwDl~~ 310 (693)
+.- ..|...+||+.. ...+++..+-++..|++..
T Consensus 301 ~~~-s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~e 336 (783)
T KOG1008|consen 301 SQC-SGIDFFTWHTASPTERQILGVINLQPKDFSVHE 336 (783)
T ss_pred ccc-cceeecCcCcCCccceeEEeeccCChhhccchh
Confidence 111 247888888754 3344555555666666544
No 364
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=0.00064 Score=73.20 Aligned_cols=146 Identities=15% Similarity=0.205 Sum_probs=99.7
Q ss_pred EEEECCCCC-EEE--EEeCC---------CcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEE--EEeCCCcEE
Q 005502 55 AISWNSKGS-LLI--SGSDD---------THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV--SGAGDAEVR 120 (693)
Q Consensus 55 ~l~~s~~g~-~La--Sgs~D---------g~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~--sgs~Dg~V~ 120 (693)
.+.|++-|+ +|+ +..-| .++.+.++....+...+ ...++|.+++|+|++ .-|+ -|-.=.+|.
T Consensus 222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L--~k~GPVhdv~W~~s~--~EF~VvyGfMPAkvt 297 (566)
T KOG2315|consen 222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL--LKEGPVHDVTWSPSG--REFAVVYGFMPAKVT 297 (566)
T ss_pred EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec--CCCCCceEEEECCCC--CEEEEEEecccceEE
Confidence 577888665 333 33233 35777787744555444 467999999999994 4444 445567899
Q ss_pred EEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCC---CcEEEEeCCCCCCCCCCCCCCcccceEE
Q 005502 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED---GTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (693)
Q Consensus 121 vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~D---g~V~iwDlr~~~~~~~~~~~~~~~~~~l 197 (693)
|||++- .++..+ -.++=+++-|+| .+++|+.+|.+ |.|-+||+.+.+.+...
T Consensus 298 ifnlr~-----------~~v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~----------- 352 (566)
T KOG2315|consen 298 IFNLRG-----------KPVFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLIAKF----------- 352 (566)
T ss_pred EEcCCC-----------CEeEeC--CCCCccceEECC-CCCEEEEeecCCCCCceEEEeccchhhcccc-----------
Confidence 999984 344444 356778899999 66787777764 78999999875432100
Q ss_pred EeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeC------CCcEEEEecC
Q 005502 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS------DAFARLYDRR 246 (693)
Q Consensus 198 ~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~------Dg~I~lwD~r 246 (693)
.....+-+.|+|+ |.+|+|+.. |..++||+..
T Consensus 353 ----------------~a~~tt~~eW~Pd-Ge~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 353 ----------------KAANTTVFEWSPD-GEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred ----------------ccCCceEEEEcCC-CcEEEEEeccccEEecCCeEEEEec
Confidence 0123456899997 788888765 7889999975
No 365
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.86 E-value=0.00012 Score=85.34 Aligned_cols=106 Identities=17% Similarity=0.045 Sum_probs=79.3
Q ss_pred cchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCC
Q 005502 360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSS 439 (693)
Q Consensus 360 ~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~ 439 (693)
+.....+...|.-+++.|+ |.+|+..|.+++...|.. ...+.+.+.+|.+. |++.+|+..+.++++.+|.
T Consensus 281 P~~~~a~~~lg~~l~~~g~-~~eA~~~l~~al~l~P~~------~~a~~~La~~l~~~---G~~~eA~~~l~~al~~~P~ 350 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQ-NEKAIPLLQQSLATHPDL------PYVRAMYARALRQV---GQYTAASDEFVQLAREKGV 350 (656)
T ss_pred CCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHC---CCHHHHHHHHHHHHHhCcc
Confidence 3444555566777777777 888888888888777665 55677778888774 4488888888888888888
Q ss_pred CcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCc
Q 005502 440 SFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS 475 (693)
Q Consensus 440 ~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~ 475 (693)
+..+++++|.++..+|++++|.+.|++++++.|++.
T Consensus 351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 777777778888888888888888888888877753
No 366
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.85 E-value=0.00053 Score=74.79 Aligned_cols=136 Identities=16% Similarity=0.176 Sum_probs=96.7
Q ss_pred ccccchhhhccccceEEeccCCCcEEEEEECC-CCCEEEEE----eCCCc----EEEEECCCCcE--EEEeccCCCcceE
Q 005502 29 SLQMHSSLVRRLSQERELEGHQGCVNAISWNS-KGSLLISG----SDDTH----INVWSYSSRKL--LHSIETGHSANVF 97 (693)
Q Consensus 29 ~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~-~g~~LaSg----s~Dg~----I~IWd~~~~~~--~~~l~~~h~~~I~ 97 (693)
++.+..-...+++++..++.-.++ .++.|+. ++..+.|. +.+|. -++|++...+. +..........|.
T Consensus 185 Nl~L~~~~~~klEvL~yirTE~dP-l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~ 263 (545)
T PF11768_consen 185 NLHLLSCSGGKLEVLSYIRTENDP-LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVI 263 (545)
T ss_pred cEEEEEecCCcEEEEEEEEecCCc-EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcce
Confidence 445554444466666666654444 5777886 44555543 33444 35777765542 2222236788999
Q ss_pred EEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 005502 98 CTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDF 177 (693)
Q Consensus 98 sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDl 177 (693)
|++++|+ ...|+.|+.||+|.+||.... +..+..+.-.++.++|+| ++.+|++|+.-|.+.+||+
T Consensus 264 ~ca~sp~--E~kLvlGC~DgSiiLyD~~~~------------~t~~~ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 264 CCARSPS--EDKLVLGCEDGSIILYDTTRG------------VTLLAKAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDM 328 (545)
T ss_pred EEecCcc--cceEEEEecCCeEEEEEcCCC------------eeeeeeecccceEEEEcC-CCcEEEEEcCCceEEEEEe
Confidence 9999999 689999999999999999853 333444567789999999 7789999999999999998
Q ss_pred CCC
Q 005502 178 RQG 180 (693)
Q Consensus 178 r~~ 180 (693)
.-.
T Consensus 329 ALs 331 (545)
T PF11768_consen 329 ALS 331 (545)
T ss_pred ecC
Confidence 754
No 367
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.85 E-value=0.00019 Score=81.11 Aligned_cols=157 Identities=17% Similarity=0.218 Sum_probs=113.7
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeC---------CCcEE
Q 005502 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---------DAEVR 120 (693)
Q Consensus 50 ~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~---------Dg~V~ 120 (693)
.+.|.-|.. ++++|.+|...|+|.+-|+.+.+.++++ ..|.+.|.++... |++|+||+. |..|+
T Consensus 177 a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~-~aHs~siSDfDv~----GNlLitCG~S~R~~~l~~D~Fvk 249 (1118)
T KOG1275|consen 177 ASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTF-DAHSGSISDFDVQ----GNLLITCGYSMRRYNLAMDPFVK 249 (1118)
T ss_pred CCceEEEEe--cCcEEEeecccceEEeecCCcCceeeee-eccccceeeeecc----CCeEEEeecccccccccccchhh
Confidence 334665554 5789999999999999999999999999 7999999887654 679999986 56689
Q ss_pred EEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEec
Q 005502 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (693)
Q Consensus 121 vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~ 200 (693)
|||++... .+..+.-+.++ .-+.|+|.-...++.++..|...+-|..+-..++. .+..
T Consensus 250 VYDLRmmr----------al~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~---------~~~~-- 307 (1118)
T KOG1275|consen 250 VYDLRMMR----------ALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPA---------GVKM-- 307 (1118)
T ss_pred hhhhhhhh----------ccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCcc---------ceeE--
Confidence 99999642 22222223332 55788897788899999999999998544321100 0000
Q ss_pred cCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecC
Q 005502 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR 246 (693)
Q Consensus 201 ~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r 246 (693)
..+ ....+..+.+++. +..||.|..+|.|.+|--+
T Consensus 308 ---------v~p-~~s~i~~fDiSsn-~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 308 ---------VNP-NGSGISAFDISSN-GDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred ---------Ecc-CCCcceeEEecCC-CceEEEecccCcEeeecCC
Confidence 001 1234889999997 7899999999999999743
No 368
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.84 E-value=7.6e-05 Score=82.14 Aligned_cols=125 Identities=17% Similarity=0.109 Sum_probs=105.8
Q ss_pred cccCcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhc
Q 005502 356 VATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARR 435 (693)
Q Consensus 356 ~~~~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ 435 (693)
....+..-..+--.|--+++.++ |+.|.-.|.+|++.+|.+ .++.+--...|.+++. ...||+-.++|+.
T Consensus 482 l~~~~rhYnAwYGlG~vy~Kqek-~e~Ae~~fqkA~~INP~n------svi~~~~g~~~~~~k~---~d~AL~~~~~A~~ 551 (638)
T KOG1126|consen 482 LGVDPRHYNAWYGLGTVYLKQEK-LEFAEFHFQKAVEINPSN------SVILCHIGRIQHQLKR---KDKALQLYEKAIH 551 (638)
T ss_pred hcCCchhhHHHHhhhhheeccch-hhHHHHHHHhhhcCCccc------hhHHhhhhHHHHHhhh---hhHHHHHHHHHHh
Confidence 34455666777888888999999 999999999999999987 6665555666666544 8899999999999
Q ss_pred cCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHHHHHHHHH
Q 005502 436 IDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAA 490 (693)
Q Consensus 436 ldp~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l~~~i~~ 490 (693)
+||.++-..|.+|..|..+++|+||+..|+.+.++.|++..+-..+-++.+++..
T Consensus 552 ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~ 606 (638)
T KOG1126|consen 552 LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGN 606 (638)
T ss_pred cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999998876666666665544
No 369
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.84 E-value=4.9e-05 Score=81.37 Aligned_cols=64 Identities=14% Similarity=-0.053 Sum_probs=60.0
Q ss_pred hhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcch---hhhHHHHHHHhccHHHHHHHHHHHccc
Q 005502 404 HECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRA---HLYMSEALEQLCKYKEALDFAIAAQCL 470 (693)
Q Consensus 404 ~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~KA---~~r~a~al~~l~~~~eA~~~~~~~~~~ 470 (693)
+..+.|++.+|.++ |+|.+|+..+.+||+++|++..| ||.+|-||..+|++++|++++++++++
T Consensus 75 a~a~~NLG~AL~~l---GryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSK---GRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 67899999999996 55999999999999999999965 999999999999999999999999987
No 370
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.84 E-value=0.00014 Score=72.11 Aligned_cols=101 Identities=17% Similarity=0.054 Sum_probs=87.4
Q ss_pred chhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCC
Q 005502 361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS 440 (693)
Q Consensus 361 ~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~ 440 (693)
..+......|..++..|+ |..|+..+.++++..|.. ...+.+++.+|+.. |++..|+....++++++|.+
T Consensus 29 ~~~~~~~~la~~~~~~~~-~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~~~~ 98 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGD-LEVAKENLDKALEHDPDD------YLAYLALALYYQQL---GELEKAEDSFRRALTLNPNN 98 (234)
T ss_pred cHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCC
Confidence 345666777888899999 999999999999987765 56788899999885 55999999999999999999
Q ss_pred cchhhhHHHHHHHhccHHHHHHHHHHHcccC
Q 005502 441 FRAHLYMSEALEQLCKYKEALDFAIAAQCLD 471 (693)
Q Consensus 441 ~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~ 471 (693)
..+++.++.++..+|++++|.+.+++++...
T Consensus 99 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 129 (234)
T TIGR02521 99 GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP 129 (234)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999998753
No 371
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.82 E-value=0.0056 Score=73.55 Aligned_cols=262 Identities=16% Similarity=0.198 Sum_probs=145.8
Q ss_pred cccccchhhhccccceEEeccCCCcEEEEEECCCCCEEEEEeC---CCcEEEEECCCCcEEEEec---cCCCcceEEEEE
Q 005502 28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSD---DTHINVWSYSSRKLLHSIE---TGHSANVFCTKF 101 (693)
Q Consensus 28 ~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~---Dg~I~IWd~~~~~~~~~l~---~~h~~~I~sl~f 101 (693)
+.+++|+-. +.+..+-+.-.+--.+|+|-|+|+++|+... ...|.+|.-+ |-.-..|. ......|..++|
T Consensus 237 R~iRVy~Re---G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~W 312 (928)
T PF04762_consen 237 RVIRVYSRE---GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAW 312 (928)
T ss_pred eEEEEECCC---ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEE
Confidence 455555432 3333333433344457899999999999864 3457777754 33333332 235678999999
Q ss_pred eeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeecc-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 005502 102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC-HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180 (693)
Q Consensus 102 ~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~ 180 (693)
+++ +.+||..-.|. |.+|-..+-.- -..+.+.. ....+..+.|+|..+..|...+.+|.+..+++.-.
T Consensus 313 n~d--s~iLAv~~~~~-vqLWt~~NYHW--------YLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~ 381 (928)
T PF04762_consen 313 NSD--SEILAVWLEDR-VQLWTRSNYHW--------YLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWD 381 (928)
T ss_pred CCC--CCEEEEEecCC-ceEEEeeCCEE--------EEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEE
Confidence 999 48888877555 99998875311 11122221 23345569999999998988888888876665422
Q ss_pred CCCCCCCCCCcccceEEEeccCCce----eeecCCC------CCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC
Q 005502 181 SSCPPAGSSHQECRNILLDLRCGAK----RSLADPP------KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP 250 (693)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~~~~----~~l~~~~------~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~ 250 (693)
.........+..+...++|-..=.. ..+..+| .-...|.+++|+++ +..+++-..||.|.+|.......
T Consensus 382 v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~-~~~~avl~~d~~l~~~~~~~~~~ 460 (928)
T PF04762_consen 382 VSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPS-NSRFAVLTSDGSLSIYEWDLKNM 460 (928)
T ss_pred EEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCC-CCeEEEEECCCCEEEEEecCCCc
Confidence 1111111111222223332111000 0011111 12357899999997 45689999999999998654321
Q ss_pred CcccccCCCCCCcccccccC--ccccCCCCccceEEEEEcCCCCEEEEEecC---CcEEEEECCC
Q 005502 251 LTSCQKRMSPPPCVNYFCPM--HLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---EHVYLMDVNH 310 (693)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~--~~~~~~h~~~~V~~v~fspdg~~L~sgs~D---g~V~lwDl~~ 310 (693)
... .++.....+... ...........+..++|..+...++....+ ..+.++++..
T Consensus 461 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 520 (928)
T PF04762_consen 461 WSV-----KPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDD 520 (928)
T ss_pred ccc-----cCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEecc
Confidence 100 000000011000 000001112247889998888777666654 6788888854
No 372
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.82 E-value=0.00082 Score=71.61 Aligned_cols=227 Identities=14% Similarity=0.181 Sum_probs=140.9
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCc----------
Q 005502 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE---------- 118 (693)
Q Consensus 49 H~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~---------- 118 (693)
-.-+++..+|||.|.+|++...- .|.+|.......+..+ .| ..|..+.|+|. +.+|+|-+..+.
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~--~~-~~V~~~~fSP~--~kYL~tw~~~pi~~pe~e~sp~ 104 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRF--RH-PDVKYLDFSPN--EKYLVTWSREPIIEPEIEISPF 104 (561)
T ss_pred cCcchhheeecCcchheehhhcc-ceEEccccchhheeee--ec-CCceecccCcc--cceeeeeccCCccChhhccCCc
Confidence 45689999999999999988664 5999998877766665 24 45899999999 789998876544
Q ss_pred -----EEEEEcCCCCCCCCCCCCCCCceeeccCCCC--eE-EEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCC
Q 005502 119 -----VRLFNLSRFSGRGLDDNAITPSALYQCHTRR--VK-KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSH 190 (693)
Q Consensus 119 -----V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~--V~-~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~ 190 (693)
+.+||+..+ ..+..+..-..+ .. -+.|+- +..+.+-. ....+.++++ +.... .
T Consensus 105 ~~~n~~~vwd~~sg----------~iv~sf~~~~q~~~~Wp~~k~s~-~D~y~ARv-v~~sl~i~e~-t~n~~----~-- 165 (561)
T COG5354 105 TSKNNVFVWDIASG----------MIVFSFNGISQPYLGWPVLKFSI-DDKYVARV-VGSSLYIHEI-TDNIE----E-- 165 (561)
T ss_pred cccCceeEEeccCc----------eeEeeccccCCcccccceeeeee-cchhhhhh-ccCeEEEEec-CCccc----c--
Confidence 889998854 334455444443 33 456665 33443322 2346888886 33211 0
Q ss_pred cccceEEEeccCCceeeecCCCCCccceEEEEEcCC-CCcEEE-----EEeCCCcEEEEecCCCCCCcccccCCCCCCcc
Q 005502 191 QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST-RPHLLL-----VGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV 264 (693)
Q Consensus 191 ~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~-~~~~La-----tgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~ 264 (693)
..+-. .....+...+|+|. ++..|| .++..+.+++|.+...+.+.+.
T Consensus 166 ----~p~~~-------------lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk---------- 218 (561)
T COG5354 166 ----HPFKN-------------LRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTK---------- 218 (561)
T ss_pred ----Cchhh-------------ccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeee----------
Confidence 00000 01234556666664 122223 2467889999998855433211
Q ss_pred cccccCccccCCCCccceEEEEEcCCCCEEEEEec-----------CCcEEEEECCCCCcceEEeecCCCceeEEeccCC
Q 005502 265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-----------GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL 333 (693)
Q Consensus 265 ~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~-----------Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~ 333 (693)
..| ...=..+.|.+.|++|++--. ...+||+++.. ...++.....+++..++|.|.+
T Consensus 219 ~lf-----------k~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e-~~i~V~~~~~~pVhdf~W~p~S 286 (561)
T COG5354 219 NLF-----------KVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE-RSIPVEKDLKDPVHDFTWEPLS 286 (561)
T ss_pred eeE-----------eecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc-cccceeccccccceeeeecccC
Confidence 011 001235788899988764322 34689999985 3334443557889999999998
Q ss_pred Cccccc
Q 005502 334 NGLELQ 339 (693)
Q Consensus 334 ~g~~~~ 339 (693)
++...-
T Consensus 287 ~~F~vi 292 (561)
T COG5354 287 SRFAVI 292 (561)
T ss_pred CceeEE
Confidence 876543
No 373
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.79 E-value=2.2e-05 Score=85.34 Aligned_cols=210 Identities=12% Similarity=0.174 Sum_probs=134.6
Q ss_pred CCcEEEEEECCCC--CEEEEEeCCCcEEEEECCCCc-EEEEeccCCCcceEEEEEeeCCCCCEEEEEe----CCCcEEEE
Q 005502 50 QGCVNAISWNSKG--SLLISGSDDTHINVWSYSSRK-LLHSIETGHSANVFCTKFVPETSDELVVSGA----GDAEVRLF 122 (693)
Q Consensus 50 ~~~V~~l~~s~~g--~~LaSgs~Dg~I~IWd~~~~~-~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs----~Dg~V~vw 122 (693)
...+.|++++-+. .+++.|..+|.|-+-.+.... .-..+..+|....++++|++-. .+.||+|- .|..+.||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLD-tn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELD-TNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceeccccccccccccccccc-HHHHHhhhhhhcccCCccce
Confidence 4467888887643 589999999999998875432 2234447889999999999872 45677663 36779999
Q ss_pred EcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccC
Q 005502 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (693)
Q Consensus 123 dl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~ 202 (693)
|+...-... .+......+....+.+++|.. +..++.+|.....|+++|+|......
T Consensus 135 di~s~ltvP-----ke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~~~~------------------ 190 (783)
T KOG1008|consen 135 DINSLLTVP-----KESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSLDSV------------------ 190 (783)
T ss_pred ecccccCCC-----ccccccccccccCcccccccc-Ccchhhcccccchhhhhhhhhhhhhh------------------
Confidence 998641111 011111112345566888884 77888899999999999999643110
Q ss_pred CceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEe-cCCCC-CCcccccCCCCCCcccccccCccccCCCCcc
Q 005502 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD-RRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 280 (693)
Q Consensus 203 ~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD-~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 280 (693)
.. -.+..+..+.+.|-.+++++.-. ||.|-+|| .++.+ ++..+..... ....
T Consensus 191 ---~s-----vnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N----------------~~~~- 244 (783)
T KOG1008|consen 191 ---SS-----VNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNEN----------------KKPK- 244 (783)
T ss_pred ---hh-----hhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCC----------------Cccc-
Confidence 00 01224566788886677877665 99999999 44433 2211111100 0111
Q ss_pred ceEEEEEcCCCCE-EEEEec-CCcEEEEECCC
Q 005502 281 HLTHVTFSPNGEE-VLLSYS-GEHVYLMDVNH 310 (693)
Q Consensus 281 ~V~~v~fspdg~~-L~sgs~-Dg~V~lwDl~~ 310 (693)
.+..++|.|...- |++.+. .++|+++|+..
T Consensus 245 ~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 245 QLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 4788999996543 344444 57999999875
No 374
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.78 E-value=0.015 Score=59.87 Aligned_cols=224 Identities=13% Similarity=0.151 Sum_probs=133.9
Q ss_pred EEEEECC-CCCEEEEEeCCCc-EEEEECCCCcEEEEeccCCCcceE--EEEEeeCCCCCEEEEEeC-----CCcEEEEEc
Q 005502 54 NAISWNS-KGSLLISGSDDTH-INVWSYSSRKLLHSIETGHSANVF--CTKFVPETSDELVVSGAG-----DAEVRLFNL 124 (693)
Q Consensus 54 ~~l~~s~-~g~~LaSgs~Dg~-I~IWd~~~~~~~~~l~~~h~~~I~--sl~f~p~~~~~~l~sgs~-----Dg~V~vwdl 124 (693)
..++.+| .+..++.+-.-|+ ..+||..+++....+. ...+.-+ --.|+|+ |++|+|.-. .|.|-|||.
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~-a~~gRHFyGHg~fs~d--G~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW-APPGRHFYGHGVFSPD--GRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc-CCCCCEEecCEEEcCC--CCEEEEeccccCCCcEEEEEEEC
Confidence 4577888 5677777877776 6799999998887763 2222222 2478998 688887644 578999999
Q ss_pred CCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCc
Q 005502 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (693)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (693)
... +..+..+..|.-....|.+.|++ ..|+.+- |-|.-. ..+++ .......+....++++..+|.
T Consensus 85 ~~~---------~~ri~E~~s~GIGPHel~l~pDG-~tLvVAN--GGI~Th-pd~GR--~kLNl~tM~psL~~ld~~sG~ 149 (305)
T PF07433_consen 85 ARG---------YRRIGEFPSHGIGPHELLLMPDG-ETLVVAN--GGIETH-PDSGR--AKLNLDTMQPSLVYLDARSGA 149 (305)
T ss_pred cCC---------cEEEeEecCCCcChhhEEEcCCC-CEEEEEc--CCCccC-cccCc--eecChhhcCCceEEEecCCCc
Confidence 832 24567777777777889999954 4443432 222111 00000 001112233345677778888
Q ss_pred eeeecCC--CCCccceEEEEEcCCCCcEEEEEeC-CCc-------EEEEecCCCCCCcccccCCCCCCcccccccCcccc
Q 005502 205 KRSLADP--PKQTLSLKSCDISSTRPHLLLVGGS-DAF-------ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 274 (693)
Q Consensus 205 ~~~l~~~--~~~~~~v~sl~~sp~~~~~Latgs~-Dg~-------I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (693)
....... ..+...|..++++++ + .++.|.. .|- |-+++... .+..+.. +....
T Consensus 150 ll~q~~Lp~~~~~lSiRHLa~~~~-G-~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~---p~~~~---------- 212 (305)
T PF07433_consen 150 LLEQVELPPDLHQLSIRHLAVDGD-G-TVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPA---PEEQW---------- 212 (305)
T ss_pred eeeeeecCccccccceeeEEecCC-C-cEEEEEecCCCCCccCCeEEEEcCCC--cceeccC---ChHHH----------
Confidence 7666555 447788999999997 4 3444432 211 22222211 1111100 00000
Q ss_pred CCCCccceEEEEEcCCCCEEEEEec-CCcEEEEECCCCCc
Q 005502 275 HGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGG 313 (693)
Q Consensus 275 ~~h~~~~V~~v~fspdg~~L~sgs~-Dg~V~lwDl~~~~~ 313 (693)
..-.+ .|-+|+++++|.++++++- .+.+.+||..++..
T Consensus 213 ~~l~~-Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~ 251 (305)
T PF07433_consen 213 RRLNG-YIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRL 251 (305)
T ss_pred HhhCC-ceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCE
Confidence 01112 5899999999998877776 78999999999653
No 375
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.77 E-value=0.0018 Score=69.62 Aligned_cols=219 Identities=11% Similarity=0.173 Sum_probs=135.9
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCC-----------CcEEE
Q 005502 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-----------AEVRL 121 (693)
Q Consensus 53 V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~D-----------g~V~v 121 (693)
=+-+.|||.|++|+|--.-| |.+|--.+...++.+ .|.+ |.-+.|+|+ .++|+|-+.. ..++|
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF--~Hp~-Vq~idfSP~--EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF--YHPG-VQFIDFSPN--EKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhc--cCCC-ceeeecCCc--cceEEEecCCccccCcccCCCceEEE
Confidence 45689999999999988765 999987777777777 4664 888999999 6899987742 46899
Q ss_pred EEcCCCCCCCCCCCCCCCceeecc--CCCCe-EEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEE
Q 005502 122 FNLSRFSGRGLDDNAITPSALYQC--HTRRV-KKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (693)
Q Consensus 122 wdl~~~~~~~~~~~~~~~~~~~~~--h~~~V-~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~ 198 (693)
||+.++. ....+.. ....+ .-+.|+. +.+++|.-.. .+|.||+..+.. ++
T Consensus 287 WDI~tG~----------lkrsF~~~~~~~~~WP~frWS~-DdKy~Arm~~-~sisIyEtpsf~---------------ll 339 (698)
T KOG2314|consen 287 WDIATGL----------LKRSFPVIKSPYLKWPIFRWSH-DDKYFARMTG-NSISIYETPSFM---------------LL 339 (698)
T ss_pred EEccccc----------hhcceeccCCCccccceEEecc-CCceeEEecc-ceEEEEecCcee---------------ee
Confidence 9999752 2333332 11222 2357887 6678876655 578888865422 22
Q ss_pred eccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEe-----CCCcEEEEecCCCCCCcccccCCCCCCcccccccCccc
Q 005502 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-----SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 273 (693)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs-----~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (693)
+.++ .....|....|+|. +++||-=. .-..+.|..+.+.+.+++. +.|
T Consensus 340 d~Ks----------lki~gIr~FswsP~-~~llAYwtpe~~~~parvtL~evPs~~~iRt~----------nlf------ 392 (698)
T KOG2314|consen 340 DKKS----------LKISGIRDFSWSPT-SNLLAYWTPETNNIPARVTLMEVPSKREIRTK----------NLF------ 392 (698)
T ss_pred cccc----------cCCccccCcccCCC-cceEEEEcccccCCcceEEEEecCccceeeec----------cce------
Confidence 2111 12345778889996 45555211 1123444444433222111 000
Q ss_pred cCCCCccce--EEEEEcCCCCEEEEEec----------CCcEEEEECCCCCcceEEeecCCCceeEEeccCCCcccc
Q 005502 274 EHGRSSLHL--THVTFSPNGEEVLLSYS----------GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLEL 338 (693)
Q Consensus 274 ~~~h~~~~V--~~v~fspdg~~L~sgs~----------Dg~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~ 338 (693)
.| ..+-|-.+|.+|+.--. =..+-||.++....+.......++.-.++|-|..+....
T Consensus 393 -------nVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~v 462 (698)
T KOG2314|consen 393 -------NVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAV 462 (698)
T ss_pred -------eeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEE
Confidence 12 23556678888775432 124678888886666556666777778888888776543
No 376
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.77 E-value=0.00015 Score=71.27 Aligned_cols=93 Identities=15% Similarity=0.129 Sum_probs=83.8
Q ss_pred cCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHHH-HHh
Q 005502 376 EGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEAL-EQL 454 (693)
Q Consensus 376 ~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~KA~~r~a~al-~~l 454 (693)
.++ ..+++..+.++|...|++ ...|.+.+.+|+.. |++..|+.-+.+|++++|++..+++..|.++ ...
T Consensus 52 ~~~-~~~~i~~l~~~L~~~P~~------~~~w~~Lg~~~~~~---g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~ 121 (198)
T PRK10370 52 QQT-PEAQLQALQDKIRANPQN------SEQWALLGEYYLWR---NDYDNALLAYRQALQLRGENAELYAALATVLYYQA 121 (198)
T ss_pred chh-HHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHC---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 445 789999999999999988 78899999999995 5599999999999999999999999999997 677
Q ss_pred cc--HHHHHHHHHHHcccCCCCchhH
Q 005502 455 CK--YKEALDFAIAAQCLDPSNSVMA 478 (693)
Q Consensus 455 ~~--~~eA~~~~~~~~~~~p~~~~~~ 478 (693)
|+ +++|.+.++++++++|++..+.
T Consensus 122 g~~~~~~A~~~l~~al~~dP~~~~al 147 (198)
T PRK10370 122 GQHMTPQTREMIDKALALDANEVTAL 147 (198)
T ss_pred CCCCcHHHHHHHHHHHHhCCCChhHH
Confidence 87 5999999999999999997654
No 377
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.75 E-value=0.0068 Score=61.60 Aligned_cols=189 Identities=14% Similarity=0.157 Sum_probs=115.2
Q ss_pred EEEEEEC-CCCCEEEEEeCCCcEEEEECCCCcEEEEecc---C-CCcceEEEEEeeCCCCCEEEEEeCC--------CcE
Q 005502 53 VNAISWN-SKGSLLISGSDDTHINVWSYSSRKLLHSIET---G-HSANVFCTKFVPETSDELVVSGAGD--------AEV 119 (693)
Q Consensus 53 V~~l~~s-~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~---~-h~~~I~sl~f~p~~~~~~l~sgs~D--------g~V 119 (693)
...+.+. +++.+ +.+... .+.++|+.+++....... . ......++++.|+ |++.++.... |.|
T Consensus 42 ~~G~~~~~~~g~l-~v~~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~--G~ly~t~~~~~~~~~~~~g~v 117 (246)
T PF08450_consen 42 PNGMAFDRPDGRL-YVADSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPD--GNLYVTDSGGGGASGIDPGSV 117 (246)
T ss_dssp EEEEEEECTTSEE-EEEETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TT--S-EEEEEECCBCTTCGGSEEE
T ss_pred CceEEEEccCCEE-EEEEcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCC--CCEEEEecCCCccccccccce
Confidence 6777787 56554 445454 466669988855433321 1 3467889999998 6777776654 345
Q ss_pred EEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEe
Q 005502 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (693)
Q Consensus 120 ~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~ 199 (693)
..++.. . + +......-...+.|+|+|++..++++-+..+.|..+++...... .....++.+
T Consensus 118 ~~~~~~-~----------~-~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~-------~~~~~~~~~ 178 (246)
T PF08450_consen 118 YRIDPD-G----------K-VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGE-------LSNRRVFID 178 (246)
T ss_dssp EEEETT-S----------E-EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCC-------EEEEEEEEE
T ss_pred EEECCC-C----------e-EEEEecCcccccceEECCcchheeecccccceeEEEeccccccc-------eeeeeeEEE
Confidence 556655 1 1 22233345667899999966567778888899999998754310 001122222
Q ss_pred ccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCc
Q 005502 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (693)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 279 (693)
+... ....-.+++.++ +++.++....+.|.++|.. ++.+..+..+ .
T Consensus 179 ~~~~-----------~g~pDG~~vD~~-G~l~va~~~~~~I~~~~p~-G~~~~~i~~p---------------------~ 224 (246)
T PF08450_consen 179 FPGG-----------PGYPDGLAVDSD-GNLWVADWGGGRIVVFDPD-GKLLREIELP---------------------V 224 (246)
T ss_dssp -SSS-----------SCEEEEEEEBTT-S-EEEEEETTTEEEEEETT-SCEEEEEE-S---------------------S
T ss_pred cCCC-----------CcCCCcceEcCC-CCEEEEEcCCCEEEEECCC-ccEEEEEcCC---------------------C
Confidence 2221 123667899996 6788888889999999987 5433322110 0
Q ss_pred cceEEEEEc-CCCCEEEEEe
Q 005502 280 LHLTHVTFS-PNGEEVLLSY 298 (693)
Q Consensus 280 ~~V~~v~fs-pdg~~L~sgs 298 (693)
..+++++|. ++.+.|++.+
T Consensus 225 ~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 225 PRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp SSEEEEEEESTTSSEEEEEE
T ss_pred CCEEEEEEECCCCCEEEEEe
Confidence 148999994 7777776554
No 378
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.75 E-value=0.0048 Score=67.86 Aligned_cols=201 Identities=11% Similarity=0.098 Sum_probs=112.7
Q ss_pred cEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCC-EEEEEeC---CCcEEEEEcCCCCCCCCCCCCCCCceeeccCCC
Q 005502 73 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE-LVVSGAG---DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR 148 (693)
Q Consensus 73 ~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~-~l~sgs~---Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~ 148 (693)
.|.+-|..... .+.+..+ +.+....|+|+ ++ +++..+. +..|.++|+..+. ...+.....
T Consensus 170 ~l~~~d~dg~~-~~~~~~~--~~~~~p~wSpD--G~~~i~y~s~~~~~~~Iyv~dl~tg~-----------~~~lt~~~g 233 (419)
T PRK04043 170 NIVLADYTLTY-QKVIVKG--GLNIFPKWANK--EQTAFYYTSYGERKPTLYKYNLYTGK-----------KEKIASSQG 233 (419)
T ss_pred eEEEECCCCCc-eeEEccC--CCeEeEEECCC--CCcEEEEEEccCCCCEEEEEECCCCc-----------EEEEecCCC
Confidence 45555654333 3334223 37789999999 45 3554333 3568888887542 122222445
Q ss_pred CeEEEEEecCCCcEEEEEeCCC--cEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCC
Q 005502 149 RVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST 226 (693)
Q Consensus 149 ~V~~l~~sp~~~~~l~Sgs~Dg--~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~ 226 (693)
.+....|+|++..++++.+.+| .|.++|+..+. ...+...+. ......|+|+
T Consensus 234 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~-----------------------~~~LT~~~~---~d~~p~~SPD 287 (419)
T PRK04043 234 MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT-----------------------LTQITNYPG---IDVNGNFVED 287 (419)
T ss_pred cEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc-----------------------EEEcccCCC---ccCccEECCC
Confidence 5667789997666776666554 46666765543 111211111 1223479998
Q ss_pred CCcEEEEEeCCC--cEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecC----
Q 005502 227 RPHLLLVGGSDA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---- 300 (693)
Q Consensus 227 ~~~~Latgs~Dg--~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~D---- 300 (693)
+..++.+....+ .|+++|+..+.... + ++ .+. ....|||+|++|+.....
T Consensus 288 G~~I~F~Sdr~g~~~Iy~~dl~~g~~~r-----------l-t~-------~g~-----~~~~~SPDG~~Ia~~~~~~~~~ 343 (419)
T PRK04043 288 DKRIVFVSDRLGYPNIFMKKLNSGSVEQ-----------V-VF-------HGK-----NNSSVSTYKNYIVYSSRETNNE 343 (419)
T ss_pred CCEEEEEECCCCCceEEEEECCCCCeEe-----------C-cc-------CCC-----cCceECCCCCEEEEEEcCCCcc
Confidence 544444444444 56667776543210 0 00 011 124899999998876653
Q ss_pred -----CcEEEEECCCCCcceEEeecCCCceeEEeccCCCcccccCC
Q 005502 301 -----EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPP 341 (693)
Q Consensus 301 -----g~V~lwDl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~ 341 (693)
..|++.|+.++....+.. ........|+|+...+.+...
T Consensus 344 ~~~~~~~I~v~d~~~g~~~~LT~--~~~~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 344 FGKNTFNLYLISTNSDYIRRLTA--NGVNQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred cCCCCcEEEEEECCCCCeEECCC--CCCcCCeEECCCCCEEEEEEc
Confidence 378999998865332222 233445788998887776643
No 379
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.00053 Score=76.74 Aligned_cols=191 Identities=15% Similarity=0.189 Sum_probs=122.0
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCC
Q 005502 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (693)
Q Consensus 50 ~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~ 129 (693)
.+.+.|++++ ++.|+-|.-+|.|++.+.... . .+. ..|... +..|.+++||+.||+|.|-.+-+..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~-~~~s~~--------~~~Gey~asCS~DGkv~I~sl~~~~- 104 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTN-FDHSSS--------ILEGEYVASCSDDGKVVIGSLFTDD- 104 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccc-cccccc--------ccCCceEEEecCCCcEEEeeccCCc-
Confidence 4567777775 679999999999999997643 3 322 245443 3348999999999999999887642
Q ss_pred CCCCCCCCCCceeeccCCCCeEEEEEecC----CCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCce
Q 005502 130 RGLDDNAITPSALYQCHTRRVKKLAVEVG----NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (693)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~----~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (693)
...++. ...++++|+++|+ ....|++||.-| +.++.-+--...
T Consensus 105 ---------~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk---------------------- 151 (846)
T KOG2066|consen 105 ---------EITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK---------------------- 151 (846)
T ss_pred ---------cceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc----------------------
Confidence 222332 4578999999995 356788999988 767653321110
Q ss_pred eeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEE
Q 005502 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV 285 (693)
Q Consensus 206 ~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v 285 (693)
..+ ......++|.++.|.. +++|-++.+| |++||+...+.+..++.+...+ ........+
T Consensus 152 ~~v-~l~~~eG~I~~i~W~g---~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~---------------R~e~fpphl 211 (846)
T KOG2066|consen 152 DSV-VLSEGEGPIHSIKWRG---NLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSV---------------RPELFPPHL 211 (846)
T ss_pred cce-eeecCccceEEEEecC---cEEEEecCCC-cEEEeccccceeeccCCCCCCC---------------CcccCCCce
Confidence 000 1112356899999974 5777776554 8999999877665543222110 111123457
Q ss_pred EEcCCCCEEEEEecCCcEEEEECC
Q 005502 286 TFSPNGEEVLLSYSGEHVYLMDVN 309 (693)
Q Consensus 286 ~fspdg~~L~sgs~Dg~V~lwDl~ 309 (693)
.|.++.+ |+.| ...+|.|..++
T Consensus 212 ~W~~~~~-LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 212 HWQDEDR-LVIG-WGDSVKICSIK 233 (846)
T ss_pred EecCCCe-EEEe-cCCeEEEEEEe
Confidence 7777665 3334 34477777776
No 380
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.72 E-value=0.00038 Score=68.91 Aligned_cols=113 Identities=12% Similarity=0.026 Sum_probs=98.4
Q ss_pred CcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCC
Q 005502 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS 438 (693)
Q Consensus 359 ~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp 438 (693)
.+.....+...|...+..|+ |.+|+....++....|++ ...|+-++++|.+++ ++..|=....+|++|.|
T Consensus 96 ~~~d~~ll~~~gk~~~~~g~-~~~A~~~~rkA~~l~p~d------~~~~~~lgaaldq~G---r~~~Ar~ay~qAl~L~~ 165 (257)
T COG5010 96 YPKDRELLAAQGKNQIRNGN-FGEAVSVLRKAARLAPTD------WEAWNLLGAALDQLG---RFDEARRAYRQALELAP 165 (257)
T ss_pred CcccHHHHHHHHHHHHHhcc-hHHHHHHHHHHhccCCCC------hhhhhHHHHHHHHcc---ChhHHHHHHHHHHHhcc
Confidence 33445566678999999999 999999999999999888 788999999999964 49999999999999999
Q ss_pred CCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHH
Q 005502 439 SSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKV 481 (693)
Q Consensus 439 ~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~ 481 (693)
+.++++-.++.-+.--|+++.|...+..+...-+.+..+.+-+
T Consensus 166 ~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NL 208 (257)
T COG5010 166 NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNL 208 (257)
T ss_pred CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 9999999999999999999999999999988877776665443
No 381
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.72 E-value=0.00028 Score=81.71 Aligned_cols=122 Identities=10% Similarity=-0.036 Sum_probs=103.0
Q ss_pred cCcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccC
Q 005502 358 TGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRID 437 (693)
Q Consensus 358 ~~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ld 437 (693)
-.|+........+.-+++.++ +++|+..+.+++...|++ +..++++|.++.+.+. +.+|+.-..++++-+
T Consensus 115 ~~Pd~~~a~~~~a~~L~~~~~-~eeA~~~~~~~l~~~p~~------~~~~~~~a~~l~~~g~---~~~A~~~y~~~~~~~ 184 (694)
T PRK15179 115 RFPDSSEAFILMLRGVKRQQG-IEAGRAEIELYFSGGSSS------AREILLEAKSWDEIGQ---SEQADACFERLSRQH 184 (694)
T ss_pred hCCCcHHHHHHHHHHHHHhcc-HHHHHHHHHHHhhcCCCC------HHHHHHHHHHHHHhcc---hHHHHHHHHHHHhcC
Confidence 356667777888889999999 999999999999999988 8899999999999755 999999999999999
Q ss_pred CCCcchhhhHHHHHHHhccHHHHHHHHHHHcccC-CCCchhHHHHHHHHHHHH
Q 005502 438 SSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLD-PSNSVMAEKVENIKKHIA 489 (693)
Q Consensus 438 p~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~-p~~~~~~~~~~~l~~~i~ 489 (693)
|++.+|++.+|.+|..+|+.++|...|++++.+. |..+.....+-++.++..
T Consensus 185 p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 237 (694)
T PRK15179 185 PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLVDLNADLA 237 (694)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999875 443333334444444443
No 382
>PLN02789 farnesyltranstransferase
Probab=97.70 E-value=0.00021 Score=75.30 Aligned_cols=93 Identities=12% Similarity=0.069 Sum_probs=83.0
Q ss_pred cCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhc
Q 005502 376 EGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLC 455 (693)
Q Consensus 376 ~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~KA~~r~a~al~~l~ 455 (693)
.+. +.+|+..++++|+..|.. ...+.+|+.++.+++. ++.+|+..+.++++.+|++..+++.|+.++..++
T Consensus 50 ~e~-serAL~lt~~aI~lnP~~------ytaW~~R~~iL~~L~~--~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 50 DER-SPRALDLTADVIRLNPGN------YTVWHFRRLCLEALDA--DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred CCC-CHHHHHHHHHHHHHCchh------HHHHHHHHHHHHHcch--hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcC
Confidence 455 999999999999999988 7899999999988642 4789999999999999999999999999999999
Q ss_pred cH--HHHHHHHHHHcccCCCCchh
Q 005502 456 KY--KEALDFAIAAQCLDPSNSVM 477 (693)
Q Consensus 456 ~~--~eA~~~~~~~~~~~p~~~~~ 477 (693)
+. ++++++++++++++|.|..+
T Consensus 121 ~~~~~~el~~~~kal~~dpkNy~A 144 (320)
T PLN02789 121 PDAANKELEFTRKILSLDAKNYHA 144 (320)
T ss_pred chhhHHHHHHHHHHHHhCcccHHH
Confidence 74 78899999999999998544
No 383
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.68 E-value=7.1e-05 Score=82.36 Aligned_cols=104 Identities=13% Similarity=0.020 Sum_probs=83.3
Q ss_pred hhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhcc----ccCcHHHHHHhHhHhhccCCC
Q 005502 364 RMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRK----WKNDAQMAIRDCYNARRIDSS 439 (693)
Q Consensus 364 ~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~----~~~d~~~A~~Dc~~Al~ldp~ 439 (693)
+.+...||-+--+++ ++.||+++.+||++.|.. |-+|--++ +..++..|..-..+||.+||.
T Consensus 422 esWca~GNcfSLQkd-h~~Aik~f~RAiQldp~f-------------aYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 422 ESWCALGNCFSLQKD-HDTAIKCFKRAIQLDPRF-------------AYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHHhcchhhhhhH-HHHHHHHHHHhhccCCcc-------------chhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 556677777666677 999999999999999865 22222111 135588899999999999999
Q ss_pred CcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHH
Q 005502 440 SFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKV 481 (693)
Q Consensus 440 ~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~ 481 (693)
+..|+|-++..+++.++++.|.-.|++|++++|.|..+.-.+
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~ 529 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHI 529 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhh
Confidence 999999999999999999999999999999999986654333
No 384
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.68 E-value=0.046 Score=60.03 Aligned_cols=48 Identities=29% Similarity=0.401 Sum_probs=38.0
Q ss_pred cEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcC
Q 005502 73 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (693)
Q Consensus 73 ~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~ 125 (693)
.|.||+. .|+.+.++.-.+ +.|.++.|..+ ..|+....||+++++|+.
T Consensus 62 ~I~iys~-sG~ll~~i~w~~-~~iv~~~wt~~---e~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDS-GRIVGMGWTDD---EELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEEECC-CCCEeEEEEECC-CCEEEEEECCC---CeEEEEEcCCEEEEEeCC
Confidence 4999996 467777764444 89999999876 566677799999999985
No 385
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.66 E-value=0.0043 Score=62.71 Aligned_cols=231 Identities=14% Similarity=0.140 Sum_probs=117.7
Q ss_pred eEEeccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 005502 43 ERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 121 (693)
Q Consensus 43 ~~~l~gH~~~V~~l~~s~~g-~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~v 121 (693)
.+.|.+-...|..|+|+|+. +++++....+.|...+. +|+.+..+.-.-.+..-.|++..+ +.++++--.++.+.+
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~--~~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGN--GRYVLSEERDQRLYI 90 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-ST--TEEEEEETTTTEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECC--CEEEEEEcCCCcEEE
Confidence 34566767779999999975 56666777788888886 578888774444466889999866 566666556899999
Q ss_pred EEcCCCCCCCCCCCCCCC--ceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEe
Q 005502 122 FNLSRFSGRGLDDNAITP--SALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (693)
Q Consensus 122 wdl~~~~~~~~~~~~~~~--~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~ 199 (693)
+++........ ...... +.....+...+-.|+|.|....+| .+-+..-..+|.++.... ... ..+...
T Consensus 91 ~~~~~~~~~~~-~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~-v~kE~~P~~l~~~~~~~~-------~~~-~~~~~~ 160 (248)
T PF06977_consen 91 FTIDDDTTSLD-RADVQKISLGFPNKGNKGFEGLAYDPKTNRLF-VAKERKPKRLYEVNGFPG-------GFD-LFVSDD 160 (248)
T ss_dssp EEE----TT---EEEEEEEE---S---SS--EEEEEETTTTEEE-EEEESSSEEEEEEESTT--------SS---EEEE-
T ss_pred EEEeccccccc-hhhceEEecccccCCCcceEEEEEcCCCCEEE-EEeCCCChhhEEEccccC-------ccc-eeeccc
Confidence 99954321110 000000 011123556789999999555555 556666677777654110 000 001100
Q ss_pred ccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCc
Q 005502 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (693)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 279 (693)
. .+.........+..++++|..+++++.+.....|..+| +.++++..+..... .+. -.+.-
T Consensus 161 ~------~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g----------~~g--l~~~~ 221 (248)
T PF06977_consen 161 Q------DLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRG----------FHG--LSKDI 221 (248)
T ss_dssp H------HHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STT----------GGG---SS--
T ss_pred c------ccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCc----------ccC--ccccc
Confidence 0 00101122345789999999889999999999999999 55554332211100 000 00111
Q ss_pred cceEEEEEcCCCCEEEEEecCCcEEEE
Q 005502 280 LHLTHVTFSPNGEEVLLSYSGEHVYLM 306 (693)
Q Consensus 280 ~~V~~v~fspdg~~L~sgs~Dg~V~lw 306 (693)
...-.|+|.++|+..+ .+.-+..|+|
T Consensus 222 ~QpEGIa~d~~G~LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 222 PQPEGIAFDPDGNLYI-VSEPNLFYRF 247 (248)
T ss_dssp -SEEEEEE-TT--EEE-EETTTEEEEE
T ss_pred CCccEEEECCCCCEEE-EcCCceEEEe
Confidence 1356899999996544 4465566665
No 386
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.65 E-value=0.00033 Score=83.36 Aligned_cols=107 Identities=8% Similarity=-0.067 Sum_probs=94.6
Q ss_pred hhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCc
Q 005502 362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSF 441 (693)
Q Consensus 362 ~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~ 441 (693)
.+..+...|..+...|+ +.+|+..|.++|+..|.. ...+.+.|.++++. |++.+|+.-+.++++++|++.
T Consensus 48 ~a~~~~~lA~~~~~~g~-~~~A~~~~~~al~~~P~~------~~a~~~la~~l~~~---g~~~eA~~~l~~~l~~~P~~~ 117 (765)
T PRK10049 48 PARGYAAVAVAYRNLKQ-WQNSLTLWQKALSLEPQN------DDYQRGLILTLADA---GQYDEALVKAKQLVSGAPDKA 117 (765)
T ss_pred CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHC---CCHHHHHHHHHHHHHhCCCCH
Confidence 34446667788889999 999999999999998877 66777889999885 559999999999999999999
Q ss_pred chhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHH
Q 005502 442 RAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAE 479 (693)
Q Consensus 442 KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~ 479 (693)
. ++.+|.++...|++++|+..+++++++.|++..+.-
T Consensus 118 ~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~ 154 (765)
T PRK10049 118 N-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPT 154 (765)
T ss_pred H-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 9 999999999999999999999999999999976643
No 387
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.00054 Score=72.53 Aligned_cols=116 Identities=12% Similarity=0.070 Sum_probs=74.9
Q ss_pred hHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchh
Q 005502 365 MLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAH 444 (693)
Q Consensus 365 ~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~KA~ 444 (693)
.+.-.|-++.+-.+ -..||+.|..||+.+|.+ .-.+...+.+|--++- +.=|+--..+|+++.|++.+-+
T Consensus 366 aWTLmGHEyvEmKN-t~AAi~sYRrAvdi~p~D------yRAWYGLGQaYeim~M---h~YaLyYfqkA~~~kPnDsRlw 435 (559)
T KOG1155|consen 366 AWTLMGHEYVEMKN-THAAIESYRRAVDINPRD------YRAWYGLGQAYEIMKM---HFYALYYFQKALELKPNDSRLW 435 (559)
T ss_pred HHHHhhHHHHHhcc-cHHHHHHHHHHHhcCchh------HHHHhhhhHHHHHhcc---hHHHHHHHHHHHhcCCCchHHH
Confidence 34445555555555 567777777777777655 4444455555544333 4446777777777777777777
Q ss_pred hhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHHHHHHHHH
Q 005502 445 LYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAA 490 (693)
Q Consensus 445 ~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l~~~i~~ 490 (693)
--+|+|+++|++.+||.+||+.++.....+..+.-.+.++.++++.
T Consensus 436 ~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d 481 (559)
T KOG1155|consen 436 VALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKD 481 (559)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh
Confidence 7777888888888888888888877766555554455555555433
No 388
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.65 E-value=0.00027 Score=88.06 Aligned_cols=117 Identities=18% Similarity=0.129 Sum_probs=93.5
Q ss_pred CcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCc-c-------hhhhhhhHHHHHHhccccCcHHHHHHhH
Q 005502 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPM-L-------RHECLCIRAALLLKRKWKNDAQMAIRDC 430 (693)
Q Consensus 359 ~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~-~-------~~~~~~NRA~~~lk~~~~~d~~~A~~Dc 430 (693)
.+.....+...|.-++..|+ |.+|+..|.++++..|...... . +.-++.+++.++++. |++.+|+.-+
T Consensus 299 ~P~~~~a~~~Lg~~~~~~g~-~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~---g~~~eA~~~~ 374 (1157)
T PRK11447 299 NPKDSEALGALGQAYSQQGD-RARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKA---NNLAQAERLY 374 (1157)
T ss_pred CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHC---CCHHHHHHHH
Confidence 44455566677888888999 9999999999999887652211 0 011234556677774 5699999999
Q ss_pred hHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHH
Q 005502 431 YNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAE 479 (693)
Q Consensus 431 ~~Al~ldp~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~ 479 (693)
.+|++++|++..|++.+|.++..+|++++|++.|+++++++|++..+..
T Consensus 375 ~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~ 423 (1157)
T PRK11447 375 QQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVR 423 (1157)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999876543
No 389
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.00025 Score=74.96 Aligned_cols=110 Identities=16% Similarity=0.077 Sum_probs=95.1
Q ss_pred HHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHH
Q 005502 369 IARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMS 448 (693)
Q Consensus 369 ~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~KA~~r~a 448 (693)
.||-+--.++ .+.||..+..||+++|.. ...+.=.+-=|+.++. ..+|+.-.++|++++|.+.+|+|-+|
T Consensus 336 IaNYYSlr~e-HEKAv~YFkRALkLNp~~------~~aWTLmGHEyvEmKN---t~AAi~sYRrAvdi~p~DyRAWYGLG 405 (559)
T KOG1155|consen 336 IANYYSLRSE-HEKAVMYFKRALKLNPKY------LSAWTLMGHEYVEMKN---THAAIESYRRAVDINPRDYRAWYGLG 405 (559)
T ss_pred ehhHHHHHHh-HHHHHHHHHHHHhcCcch------hHHHHHhhHHHHHhcc---cHHHHHHHHHHHhcCchhHHHHhhhh
Confidence 5666666666 889999999999999877 5566666777888766 89999999999999999999999999
Q ss_pred HHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHHHHHHH
Q 005502 449 EALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHI 488 (693)
Q Consensus 449 ~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l~~~i 488 (693)
||+.-|+-..=|+=++++++++-|.+.-+-..+-++-+++
T Consensus 406 QaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl 445 (559)
T KOG1155|consen 406 QAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKL 445 (559)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh
Confidence 9999999999999999999999999987766666666654
No 390
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.62 E-value=0.0005 Score=66.80 Aligned_cols=106 Identities=16% Similarity=0.036 Sum_probs=89.2
Q ss_pred chhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCC
Q 005502 361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS 440 (693)
Q Consensus 361 ~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~ 440 (693)
..+....+.|-.++..|+ +..|.+-..+||+..|.. ...|.-||..|.+++. ...|-+...+||.++|++
T Consensus 33 ~aa~arlqLal~YL~~gd-~~~A~~nlekAL~~DPs~------~~a~~~~A~~Yq~~Ge---~~~A~e~YrkAlsl~p~~ 102 (250)
T COG3063 33 EAAKARLQLALGYLQQGD-YAQAKKNLEKALEHDPSY------YLAHLVRAHYYQKLGE---NDLADESYRKALSLAPNN 102 (250)
T ss_pred HHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHcCC---hhhHHHHHHHHHhcCCCc
Confidence 345566678889999999 999999999999999887 6778899999999754 899999999999999999
Q ss_pred cchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchh
Q 005502 441 FRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 477 (693)
Q Consensus 441 ~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~ 477 (693)
...+-.-+-=|.+.|+|++|+..|.+++. +|.+...
T Consensus 103 GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-~P~Y~~~ 138 (250)
T COG3063 103 GDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAYGEP 138 (250)
T ss_pred cchhhhhhHHHHhCCChHHHHHHHHHHHh-CCCCCCc
Confidence 99888888888888888888888888863 4554433
No 391
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.0024 Score=66.36 Aligned_cols=96 Identities=15% Similarity=0.210 Sum_probs=79.0
Q ss_pred EEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEE
Q 005502 74 INVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKL 153 (693)
Q Consensus 74 I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 153 (693)
|++.+..+.+... +..+|...|.+++|+|.. ..++..++.+.+|.|.|+++. ..+..+..| ..+.++
T Consensus 175 v~~l~~~~fkssq-~lp~~g~~IrdlafSp~~-~GLl~~asl~nkiki~dlet~----------~~vssy~a~-~~~wSC 241 (463)
T KOG1645|consen 175 VQKLESHDFKSSQ-ILPGEGSFIRDLAFSPFN-EGLLGLASLGNKIKIMDLETS----------CVVSSYIAY-NQIWSC 241 (463)
T ss_pred eEEeccCCcchhh-cccccchhhhhhccCccc-cceeeeeccCceEEEEecccc----------eeeeheecc-CCceee
Confidence 5556655556555 337888999999999995 448999999999999999975 346666666 789999
Q ss_pred EEecCCCcEEEEEeCCCcEEEEeCCCCCC
Q 005502 154 AVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (693)
Q Consensus 154 ~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~ 182 (693)
+|.-++.++|..|-..|.|.+||+|..+.
T Consensus 242 ~wDlde~h~IYaGl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 242 CWDLDERHVIYAGLQNGMVLVYDMRQPEG 270 (463)
T ss_pred eeccCCcceeEEeccCceEEEEEccCCCc
Confidence 99998899999999999999999998764
No 392
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.60 E-value=0.00021 Score=79.83 Aligned_cols=102 Identities=23% Similarity=0.130 Sum_probs=85.2
Q ss_pred hhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHH--hHhHhhccCCCCc
Q 005502 364 RMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIR--DCYNARRIDSSSF 441 (693)
Q Consensus 364 ~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~--Dc~~Al~ldp~~~ 441 (693)
..+...|......|+ +.+|.++|..|+..+|+. .....-.|.+++++|. ...|.. -...|+++||.+.
T Consensus 685 ~~~~~~G~~~~~~~~-~~EA~~af~~Al~ldP~h------v~s~~Ala~~lle~G~---~~la~~~~~L~dalr~dp~n~ 754 (799)
T KOG4162|consen 685 SVYYLRGLLLEVKGQ-LEEAKEAFLVALALDPDH------VPSMTALAELLLELGS---PRLAEKRSLLSDALRLDPLNH 754 (799)
T ss_pred HHHHHhhHHHHHHHh-hHHHHHHHHHHHhcCCCC------cHHHHHHHHHHHHhCC---cchHHHHHHHHHHHhhCCCCH
Confidence 344556667777888 999999999999999876 3455566899999764 555555 6777899999999
Q ss_pred chhhhHHHHHHHhccHHHHHHHHHHHcccCCCCc
Q 005502 442 RAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS 475 (693)
Q Consensus 442 KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~ 475 (693)
+|+|.+|..+.++|+.++|.+||+++++++++++
T Consensus 755 eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 755 EAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 9999999999999999999999999999998765
No 393
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.57 E-value=0.00023 Score=66.69 Aligned_cols=101 Identities=17% Similarity=0.119 Sum_probs=75.6
Q ss_pred hhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhcccc-------CcHHHHHHhHhHhhccCCCCcchhhhHHHHHH
Q 005502 380 PYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWK-------NDAQMAIRDCYNARRIDSSSFRAHLYMSEALE 452 (693)
Q Consensus 380 y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~-------~d~~~A~~Dc~~Al~ldp~~~KA~~r~a~al~ 452 (693)
|+.|.+.|..+...+|.+ +.-+.|=+.+++.+... .=+.+|+.-..+||.|+|+...|++..|.||.
T Consensus 7 FE~ark~aea~y~~nP~D------adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~t 80 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLD------ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYT 80 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-------HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHh------HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 677888888888888876 66666666666654321 11556888889999999999999999999999
Q ss_pred Hhcc-----------HHHHHHHHHHHcccCCCCchhHHHHHHHHH
Q 005502 453 QLCK-----------YKEALDFAIAAQCLDPSNSVMAEKVENIKK 486 (693)
Q Consensus 453 ~l~~-----------~~eA~~~~~~~~~~~p~~~~~~~~~~~l~~ 486 (693)
.++. |++|.++|+++...+|+|...++.|+...+
T Consensus 81 s~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 81 SLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAK 125 (186)
T ss_dssp HHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHT
T ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence 8885 889999999999999999888877766543
No 394
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.56 E-value=0.00045 Score=74.14 Aligned_cols=74 Identities=12% Similarity=0.033 Sum_probs=63.4
Q ss_pred ccCcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhcc
Q 005502 357 ATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRI 436 (693)
Q Consensus 357 ~~~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~l 436 (693)
...+.....+...|..+++.|+ |++|+..|.+||++.|+. ...+..|.|+|.||.+++ ++.+|+.+..+||++
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGr-yeEAIa~f~rALeL~Pd~---aeA~~A~yNLAcaya~LG---r~dEAla~LrrALel 141 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGR-VKDALAQFETALELNPNP---DEAQAAYYNKACCHAYRE---EGKKAADCLRTALRD 141 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHh
Confidence 4567778889999999999999 999999999999999876 111246999999999975 499999999999998
Q ss_pred C
Q 005502 437 D 437 (693)
Q Consensus 437 d 437 (693)
.
T Consensus 142 s 142 (453)
T PLN03098 142 Y 142 (453)
T ss_pred c
Confidence 3
No 395
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.56 E-value=4.2e-05 Score=51.75 Aligned_cols=32 Identities=16% Similarity=0.168 Sum_probs=30.6
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHhccHHHHH
Q 005502 430 CYNARRIDSSSFRAHLYMSEALEQLCKYKEAL 461 (693)
Q Consensus 430 c~~Al~ldp~~~KA~~r~a~al~~l~~~~eA~ 461 (693)
+.+||+++|+++.||+.+|.+|..+|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 57899999999999999999999999999996
No 396
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.56 E-value=0.046 Score=60.22 Aligned_cols=147 Identities=11% Similarity=0.103 Sum_probs=78.4
Q ss_pred EEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE-
Q 005502 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF- 122 (693)
Q Consensus 44 ~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vw- 122 (693)
+.+....-.+..|+++|+|+.++.+ .||...|+.....+... .+.-....|.+. ..+|+-...++|.|+
T Consensus 26 k~lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~------~G~g~~~vw~~~---n~yAv~~~~~~I~I~k 95 (443)
T PF04053_consen 26 KELGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA------FGSGLSFVWSSR---NRYAVLESSSTIKIYK 95 (443)
T ss_dssp EEEEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE------EEE-SEEEE-TS---SEEEEE-TTS-EEEEE
T ss_pred ccCCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc------cCceeEEEEecC---ccEEEEECCCeEEEEE
Confidence 3444555668899999999999885 56788888844333221 234557889885 457777778999996
Q ss_pred EcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccC
Q 005502 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (693)
Q Consensus 123 dl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~ 202 (693)
++.. .....+.. ...+..|-. +.+|...+. +.|.+||+.+.+.. -.
T Consensus 96 n~~~-----------~~~k~i~~-~~~~~~If~----G~LL~~~~~-~~i~~yDw~~~~~i--------------~~--- 141 (443)
T PF04053_consen 96 NFKN-----------EVVKSIKL-PFSVEKIFG----GNLLGVKSS-DFICFYDWETGKLI--------------RR--- 141 (443)
T ss_dssp TTEE------------TT------SS-EEEEE-----SSSEEEEET-TEEEEE-TTT--EE--------------EE---
T ss_pred cCcc-----------ccceEEcC-CcccceEEc----CcEEEEECC-CCEEEEEhhHccee--------------eE---
Confidence 4432 11222221 223444432 566655555 48999999887522 10
Q ss_pred CceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecC
Q 005502 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR 246 (693)
Q Consensus 203 ~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r 246 (693)
+ ....|+.+.|+++ +.+++..+.+ .+.|++..
T Consensus 142 -----i-----~v~~vk~V~Ws~~-g~~val~t~~-~i~il~~~ 173 (443)
T PF04053_consen 142 -----I-----DVSAVKYVIWSDD-GELVALVTKD-SIYILKYN 173 (443)
T ss_dssp -----E-----SS-E-EEEEE-TT-SSEEEEE-S--SEEEEEE-
T ss_pred -----E-----ecCCCcEEEEECC-CCEEEEEeCC-eEEEEEec
Confidence 0 0123789999997 6778777654 67777754
No 397
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.54 E-value=0.00031 Score=76.52 Aligned_cols=105 Identities=16% Similarity=0.091 Sum_probs=82.1
Q ss_pred hHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchh
Q 005502 365 MLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAH 444 (693)
Q Consensus 365 ~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~KA~ 444 (693)
.+...+.-+.+.|+ |.+|++.|.++++..+..... ....+|.+.|..|++. |++.+|+..+.++++++|++..++
T Consensus 143 ~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~ 217 (389)
T PRK11788 143 ALQQLLEIYQQEKD-WQKAIDVAERLEKLGGDSLRV-EIAHFYCELAQQALAR---GDLDAARALLKKALAADPQCVRAS 217 (389)
T ss_pred HHHHHHHHHHHhch-HHHHHHHHHHHHHhcCCcchH-HHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHhHCcCCHHHH
Confidence 34445566677788 888888888888766543111 1234677888888884 559999999999999999999999
Q ss_pred hhHHHHHHHhccHHHHHHHHHHHcccCCCC
Q 005502 445 LYMSEALEQLCKYKEALDFAIAAQCLDPSN 474 (693)
Q Consensus 445 ~r~a~al~~l~~~~eA~~~~~~~~~~~p~~ 474 (693)
+.+|.++..+|++++|++.++++...+|.+
T Consensus 218 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 218 ILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 999999999999999999999999888865
No 398
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.53 E-value=0.0005 Score=82.78 Aligned_cols=107 Identities=20% Similarity=0.078 Sum_probs=90.7
Q ss_pred chhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCC
Q 005502 361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS 440 (693)
Q Consensus 361 ~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~ 440 (693)
.....+...|..++..|+ |..|+..|.++++..|.. ...+...|.+++.. |++.+|+..+.++++.+|.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~-~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~---~~~~~A~~~~~~~~~~~~~~ 192 (899)
T TIGR02917 123 GAAELLALRGLAYLGLGQ-LELAQKSYEQALAIDPRS------LYAKLGLAQLALAE---NRFDEARALIDEVLTADPGN 192 (899)
T ss_pred hhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCC------hhhHHHHHHHHHHC---CCHHHHHHHHHHHHHhCCCC
Confidence 345666778888888999 999999999999988765 45677888888885 45999999999999999999
Q ss_pred cchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchh
Q 005502 441 FRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 477 (693)
Q Consensus 441 ~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~ 477 (693)
..+++.++.++..+|++++|.+++++++.++|.+...
T Consensus 193 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 229 (899)
T TIGR02917 193 VDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAV 229 (899)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Confidence 9999999999999999999999999999999987543
No 399
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.52 E-value=0.00091 Score=67.05 Aligned_cols=109 Identities=14% Similarity=0.007 Sum_probs=93.5
Q ss_pred hhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcc
Q 005502 363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR 442 (693)
Q Consensus 363 a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~K 442 (693)
+.++-+.+-.+++.|+ |..|...+.+-|+.+|.. ...+..+.-.+-+++.+ |||..|..-...+.+-.|.+.|
T Consensus 141 ~~~~Y~~A~~~~ksgd-y~~A~~~F~~fi~~YP~s---~~~~nA~yWLGe~~y~q---g~y~~Aa~~f~~~~k~~P~s~K 213 (262)
T COG1729 141 ATKLYNAALDLYKSGD-YAEAEQAFQAFIKKYPNS---TYTPNAYYWLGESLYAQ---GDYEDAAYIFARVVKDYPKSPK 213 (262)
T ss_pred hhHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCC---cccchhHHHHHHHHHhc---ccchHHHHHHHHHHHhCCCCCC
Confidence 3457888999999999 999999999999999876 33345566678889885 5599999888888888888877
Q ss_pred h---hhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhH
Q 005502 443 A---HLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA 478 (693)
Q Consensus 443 A---~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~ 478 (693)
| +|.+|.++..|++-++|...|+++.+.+|+...+.
T Consensus 214 ApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 214 APDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 5 99999999999999999999999999999986654
No 400
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.51 E-value=0.0047 Score=68.61 Aligned_cols=123 Identities=16% Similarity=0.222 Sum_probs=88.1
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCC
Q 005502 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 128 (693)
Q Consensus 49 H~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~ 128 (693)
|...|.--++...+++|+.|+.-|.+.+|+-..++....-..+..+.+..+..++. +.++|.|+..|.|.|+-++...
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~--e~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSV--EYLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecch--hHhhhhhcCCceEEeehhhccC
Confidence 44556666677789999999999999999987765544322334445555666666 6788899999999999888632
Q ss_pred CCCCCCCCCCCce-eeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 005502 129 GRGLDDNAITPSA-LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (693)
Q Consensus 129 ~~~~~~~~~~~~~-~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~ 179 (693)
.... ..+. .-+.|..+|++++|++ ++..+.+|..-|+|.+..+..
T Consensus 110 p~~~-----~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 110 PRDL-----DYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CCcc-----eeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEech
Confidence 1110 0011 1123788999999999 778888999999999888776
No 401
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.50 E-value=0.00027 Score=56.92 Aligned_cols=68 Identities=18% Similarity=0.089 Sum_probs=58.5
Q ss_pred HhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHH
Q 005502 371 RNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMS 448 (693)
Q Consensus 371 n~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~KA~~r~a 448 (693)
+-++..++ |..|++.+..+|...|.. ..++.++|.+|.+. |++.+|+.++.++++++|++..+..-++
T Consensus 3 ~~~~~~~~-~~~A~~~~~~~l~~~p~~------~~~~~~~a~~~~~~---g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 3 QIYLQQED-YEEALEVLERALELDPDD------PELWLQRARCLFQL---GRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHhCCC-HHHHHHHHHHHHHhCccc------chhhHHHHHHHHHh---ccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 34677888 999999999999999887 78899999999996 4599999999999999998876654443
No 402
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.45 E-value=0.00027 Score=47.45 Aligned_cols=38 Identities=34% Similarity=0.688 Sum_probs=34.8
Q ss_pred cceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEE
Q 005502 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS 78 (693)
Q Consensus 41 ~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd 78 (693)
.+...+..|...|+++.|++.+.++++++.|+.|++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45677889999999999999999999999999999996
No 403
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.44 E-value=0.0016 Score=65.63 Aligned_cols=110 Identities=15% Similarity=0.051 Sum_probs=87.9
Q ss_pred hhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhcc-----ccCcHHHHHHhHhHhhccCC
Q 005502 364 RMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRK-----WKNDAQMAIRDCYNARRIDS 438 (693)
Q Consensus 364 ~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~-----~~~d~~~A~~Dc~~Al~ldp 438 (693)
......|.-+++.++ |.+|+..|.++++..|+.. .....+.+++.+|.+.. ..|++..|+....++++.+|
T Consensus 71 ~a~~~la~~~~~~~~-~~~A~~~~~~~l~~~p~~~---~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 146 (235)
T TIGR03302 71 QAQLDLAYAYYKSGD-YAEAIAAADRFIRLHPNHP---DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP 146 (235)
T ss_pred HHHHHHHHHHHhcCC-HHHHHHHHHHHHHHCcCCC---chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC
Confidence 345667888899999 9999999999999998651 11235677888888741 12568999999999999999
Q ss_pred CCcchh-----------------hhHHHHHHHhccHHHHHHHHHHHcccCCCCchh
Q 005502 439 SSFRAH-----------------LYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 477 (693)
Q Consensus 439 ~~~KA~-----------------~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~ 477 (693)
++..+. +.+|..++..|++.+|+..++.++...|+.+..
T Consensus 147 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 202 (235)
T TIGR03302 147 NSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPAT 202 (235)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcch
Confidence 986542 466888899999999999999999999986543
No 404
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.43 E-value=0.00037 Score=74.94 Aligned_cols=68 Identities=22% Similarity=0.099 Sum_probs=61.0
Q ss_pred hhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhH
Q 005502 408 CIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA 478 (693)
Q Consensus 408 ~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~ 478 (693)
...|..+++. ++|..|+.-+.+||+++|++..+|+.+|.||+.+|++++|+.++++++.++|.+..+.
T Consensus 6 ~~~a~~a~~~---~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~ 73 (356)
T PLN03088 6 EDKAKEAFVD---DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAY 73 (356)
T ss_pred HHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHH
Confidence 4456666773 6699999999999999999999999999999999999999999999999999986654
No 405
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.41 E-value=0.0002 Score=80.43 Aligned_cols=163 Identities=21% Similarity=0.242 Sum_probs=111.7
Q ss_pred EEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEE
Q 005502 84 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 163 (693)
Q Consensus 84 ~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l 163 (693)
...+| ..|...-+|++|+.. .+.|+.|+..|.|+++++..+ .-.....||...|+.+.-+.++..+|
T Consensus 1093 ~w~~f-rd~~~~fTc~afs~~--~~hL~vG~~~Geik~~nv~sG----------~~e~s~ncH~SavT~vePs~dgs~~L 1159 (1516)
T KOG1832|consen 1093 SWRSF-RDETALFTCIAFSGG--TNHLAVGSHAGEIKIFNVSSG----------SMEESVNCHQSAVTLVEPSVDGSTQL 1159 (1516)
T ss_pred cchhh-hccccceeeEEeecC--CceEEeeeccceEEEEEccCc----------cccccccccccccccccccCCcceee
Confidence 44455 578888999999988 589999999999999999976 33567789999999999888555555
Q ss_pred EEEeCCC-cEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCC-ccceEEEEEcCCCCcEEEEEeCCCcEE
Q 005502 164 WSASEDG-TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ-TLSLKSCDISSTRPHLLLVGGSDAFAR 241 (693)
Q Consensus 164 ~Sgs~Dg-~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~-~~~v~sl~~sp~~~~~Latgs~Dg~I~ 241 (693)
.+++... ..-+|++.+.-.. .| -..-.++.|+.. ...-++|+.-..+.
T Consensus 1160 tsss~S~PlsaLW~~~s~~~~-----------------------------~Hsf~ed~~vkFsn~-~q~r~~gt~~d~a~ 1209 (1516)
T KOG1832|consen 1160 TSSSSSSPLSALWDASSTGGP-----------------------------RHSFDEDKAVKFSNS-LQFRALGTEADDAL 1209 (1516)
T ss_pred eeccccCchHHHhccccccCc-----------------------------cccccccceeehhhh-HHHHHhcccccceE
Confidence 5555444 5668887652100 11 123456778765 44556666667889
Q ss_pred EEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCC
Q 005502 242 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (693)
Q Consensus 242 lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~ 311 (693)
+||+.+..++.+ ++.+.... ++.-+++.|+|+...++- || .+||++..
T Consensus 1210 ~YDvqT~~~l~t------------ylt~~~~~-----~y~~n~a~FsP~D~LIln---dG--vLWDvR~~ 1257 (1516)
T KOG1832|consen 1210 LYDVQTCSPLQT------------YLTDTVTS-----SYSNNLAHFSPCDTLILN---DG--VLWDVRIP 1257 (1516)
T ss_pred EEecccCcHHHH------------hcCcchhh-----hhhccccccCCCcceEee---Cc--eeeeeccH
Confidence 999998765433 22221111 112367899999987763 33 58999985
No 406
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.40 E-value=0.038 Score=60.00 Aligned_cols=103 Identities=18% Similarity=0.238 Sum_probs=62.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCc
Q 005502 61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS 140 (693)
Q Consensus 61 ~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~ 140 (693)
++..++.++.++.|..+|..+++.+..... .+.+.+.-... +..++.+..++.|..||..++. .+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~p~v~---~~~v~v~~~~g~l~a~d~~tG~----------~~ 168 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKL--SSEVLSPPLVA---NGLVVVRTNDGRLTALDAATGE----------RL 168 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeecc--CceeecCCEEE---CCEEEEECCCCeEEEEEcCCCc----------ee
Confidence 356778888899999999999988766532 22333221111 3567777889999999998642 22
Q ss_pred eeeccCCCCe-----EEEEEecCCCcEEEEEeCCCcEEEEeCCCCC
Q 005502 141 ALYQCHTRRV-----KKLAVEVGNPHVVWSASEDGTLRQHDFRQGS 181 (693)
Q Consensus 141 ~~~~~h~~~V-----~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~ 181 (693)
..+......+ ....+. + ..++.+..+|.|..+|.++++
T Consensus 169 W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~ 211 (377)
T TIGR03300 169 WTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQTGQ 211 (377)
T ss_pred eEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEccCCC
Confidence 2222111110 011111 2 255677778888888887765
No 407
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.39 E-value=0.00031 Score=70.81 Aligned_cols=66 Identities=23% Similarity=0.221 Sum_probs=57.8
Q ss_pred hhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCch
Q 005502 408 CIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (693)
Q Consensus 408 ~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~ 476 (693)
.+-+.-.++ .++|.+||.-.++||+|+|++.==|..||.||.+||.|+.|+++++++++++|.+..
T Consensus 85 K~eGN~~m~---~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ysk 150 (304)
T KOG0553|consen 85 KNEGNKLMK---NKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSK 150 (304)
T ss_pred HHHHHHHHH---hhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHH
Confidence 344444555 456999999999999999999999999999999999999999999999999998743
No 408
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.37 E-value=0.0012 Score=54.24 Aligned_cols=69 Identities=29% Similarity=0.247 Sum_probs=62.6
Q ss_pred hhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchh
Q 005502 406 CLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 477 (693)
Q Consensus 406 ~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~ 477 (693)
.+.++|.+++.. |++..|+.-+.+++++.|.+..+++.+|.++..++++++|.+.++.++.+.|.+...
T Consensus 2 ~~~~~a~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 70 (100)
T cd00189 2 ALLNLGNLYYKL---GDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKA 70 (100)
T ss_pred HHHHHHHHHHHH---hcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhH
Confidence 467888999885 459999999999999999999999999999999999999999999999999988644
No 409
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.36 E-value=0.0014 Score=79.02 Aligned_cols=104 Identities=15% Similarity=0.049 Sum_probs=72.2
Q ss_pred hhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcch
Q 005502 364 RMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRA 443 (693)
Q Consensus 364 ~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~KA 443 (693)
......|.-++..|+ +.+|+..|.++++..|+. ...+.+.+..|.+. |+ ..|+.-+.+++++.|++...
T Consensus 771 ~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~---~~-~~A~~~~~~~~~~~~~~~~~ 839 (899)
T TIGR02917 771 VLRTALAELYLAQKD-YDKAIKHYRTVVKKAPDN------AVVLNNLAWLYLEL---KD-PRALEYAEKALKLAPNIPAI 839 (899)
T ss_pred HHHHHHHHHHHHCcC-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhc---Cc-HHHHHHHHHHHhhCCCCcHH
Confidence 334444555566677 777777777777766654 55666777777664 33 45777777777777777777
Q ss_pred hhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhH
Q 005502 444 HLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA 478 (693)
Q Consensus 444 ~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~ 478 (693)
+..+|.++..+|++++|++.++++++++|.+..+.
T Consensus 840 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 874 (899)
T TIGR02917 840 LDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIR 874 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH
Confidence 77777778888888888888888887777765543
No 410
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.36 E-value=0.00013 Score=49.29 Aligned_cols=32 Identities=38% Similarity=0.456 Sum_probs=24.7
Q ss_pred chhhhHHHHHHHhccHHHHHHHHHHHcccCCC
Q 005502 442 RAHLYMSEALEQLCKYKEALDFAIAAQCLDPS 473 (693)
Q Consensus 442 KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~ 473 (693)
++|+++|.++..++++++|+++++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 57778888888888888888888888888775
No 411
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.35 E-value=0.00079 Score=73.50 Aligned_cols=75 Identities=15% Similarity=0.210 Sum_probs=63.3
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCC
Q 005502 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 127 (693)
Q Consensus 48 gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~ 127 (693)
.....|.|++++|+...|+.|+.||.|++||..++... + ....-.++.++|+|+ |.+|++|+..|.+.+||+...
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~-~ka~~~P~~iaWHp~--gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--L-AKAEFIPTLIAWHPD--GAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--e-eeecccceEEEEcCC--CcEEEEEcCCceEEEEEeecC
Confidence 46778999999999999999999999999998765332 2 234456789999999 699999999999999999853
No 412
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.35 E-value=0.00081 Score=69.89 Aligned_cols=114 Identities=18% Similarity=0.165 Sum_probs=84.5
Q ss_pred chhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCC
Q 005502 361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS 440 (693)
Q Consensus 361 ~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~ 440 (693)
....-+...|+...+.|+ +..|+..|.+||+..|++ ..+..+.+..++.. |++.++..-+....+..|.+
T Consensus 144 ~~~~~~~~~a~~~~~~G~-~~~A~~~~~~al~~~P~~------~~~~~~l~~~li~~---~~~~~~~~~l~~~~~~~~~~ 213 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGD-PDKALRDYRKALELDPDD------PDARNALAWLLIDM---GDYDEAREALKRLLKAAPDD 213 (280)
T ss_dssp T-HHHHHHHHHHHHHCCH-HHHHHHHHHHHHHH-TT-------HHHHHHHHHHHCTT---CHHHHHHHHHHHHHHH-HTS
T ss_pred CCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHC---CChHHHHHHHHHHHHHCcCH
Confidence 345566778888888999 999999999999999887 55666666666664 44776555555555555888
Q ss_pred cchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHHH
Q 005502 441 FRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENI 484 (693)
Q Consensus 441 ~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l 484 (693)
+..+.-.|.++..||++++|+..++++++..|.+..+...+..+
T Consensus 214 ~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~ 257 (280)
T PF13429_consen 214 PDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADA 257 (280)
T ss_dssp CCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccccccccccccccccccccccccccccc
Confidence 88888899999999999999999999999999998765444443
No 413
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.35 E-value=0.0013 Score=82.07 Aligned_cols=102 Identities=13% Similarity=-0.011 Sum_probs=84.3
Q ss_pred hhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcch
Q 005502 364 RMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRA 443 (693)
Q Consensus 364 ~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~KA 443 (693)
..+...|..+.+.|+ |.+|++.|.++++..|.+ ...+.+.|.+|.+. |++.+|+..+.++++++|+++.+
T Consensus 604 ~~~~~La~~~~~~g~-~~~A~~~y~~al~~~P~~------~~a~~~la~~~~~~---g~~~eA~~~l~~ll~~~p~~~~~ 673 (1157)
T PRK11447 604 RIDLTLADWAQQRGD-YAAARAAYQRVLTREPGN------ADARLGLIEVDIAQ---GDLAAARAQLAKLPATANDSLNT 673 (1157)
T ss_pred hHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHC---CCHHHHHHHHHHHhccCCCChHH
Confidence 344556777788888 999999999999888776 56778888888885 45889999999999999988888
Q ss_pred hhhHHHHHHHhccHHHHHHHHHHHcccCCCCc
Q 005502 444 HLYMSEALEQLCKYKEALDFAIAAQCLDPSNS 475 (693)
Q Consensus 444 ~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~ 475 (693)
++++|.++.++|++++|.+.+++++...|+..
T Consensus 674 ~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 705 (1157)
T PRK11447 674 QRRVALAWAALGDTAAAQRTFNRLIPQAKSQP 705 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhhCccCC
Confidence 99999999999999999999999888776543
No 414
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.34 E-value=0.00032 Score=55.18 Aligned_cols=64 Identities=17% Similarity=0.186 Sum_probs=56.0
Q ss_pred HHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCc
Q 005502 368 EIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSF 441 (693)
Q Consensus 368 ~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~ 441 (693)
..|..+++.|+ |.+|+..|.++++..|.. ...+...|.+++++ |++.+|+.-..++++++|+++
T Consensus 2 ~~a~~~~~~g~-~~~A~~~~~~~l~~~P~~------~~a~~~lg~~~~~~---g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGD-YDEAIAAFEQALKQDPDN------PEAWYLLGRILYQQ---GRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTH-HHHHHHHHHHHHCCSTTH------HHHHHHHHHHHHHT---T-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCC-HHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHCcCCC
Confidence 46788899999 999999999999999876 77899999999996 559999999999999999874
No 415
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.29 E-value=0.01 Score=59.71 Aligned_cols=194 Identities=16% Similarity=0.155 Sum_probs=107.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCc
Q 005502 61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS 140 (693)
Q Consensus 61 ~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~ 140 (693)
++..+++++.++.|..||..+++.+..+... ..+...... . +..++.+..++.|..+|..++ +.+
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~--~~~~~~~~~-~--~~~v~v~~~~~~l~~~d~~tG----------~~~ 99 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLP--GPISGAPVV-D--GGRVYVGTSDGSLYALDAKTG----------KVL 99 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECS--SCGGSGEEE-E--TTEEEEEETTSEEEEEETTTS----------CEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecc--ccccceeee-c--ccccccccceeeeEecccCCc----------cee
Confidence 4567777789999999999999988776322 211111122 2 356777778889999998765 334
Q ss_pred eee-ccCC---CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCcc
Q 005502 141 ALY-QCHT---RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL 216 (693)
Q Consensus 141 ~~~-~~h~---~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~ 216 (693)
... .... .......... .+..++.+..++.|..+|+++++ .+|............. ....
T Consensus 100 W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~tG~--------------~~w~~~~~~~~~~~~~-~~~~ 163 (238)
T PF13360_consen 100 WSIYLTSSPPAGVRSSSSPAV-DGDRLYVGTSSGKLVALDPKTGK--------------LLWKYPVGEPRGSSPI-SSFS 163 (238)
T ss_dssp EEEEE-SSCTCSTB--SEEEE-ETTEEEEEETCSEEEEEETTTTE--------------EEEEEESSTT-SS--E-EEET
T ss_pred eeeccccccccccccccCceE-ecCEEEEEeccCcEEEEecCCCc--------------EEEEeecCCCCCCcce-eeec
Confidence 432 2111 1111222222 24567778889999999999875 3333222110000000 0000
Q ss_pred ce-EEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEE
Q 005502 217 SL-KSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVL 295 (693)
Q Consensus 217 ~v-~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~ 295 (693)
.+ ..+.+. . + .+.+++.++.+.-+|+.+++.+... + . . .+.. ...+.+..|+
T Consensus 164 ~~~~~~~~~-~-~-~v~~~~~~g~~~~~d~~tg~~~w~~--------------~--~------~-~~~~-~~~~~~~~l~ 216 (238)
T PF13360_consen 164 DINGSPVIS-D-G-RVYVSSGDGRVVAVDLATGEKLWSK--------------P--I------S-GIYS-LPSVDGGTLY 216 (238)
T ss_dssp TEEEEEECC-T-T-EEEEECCTSSEEEEETTTTEEEEEE--------------C--S------S--ECE-CEECCCTEEE
T ss_pred ccccceEEE-C-C-EEEEEcCCCeEEEEECCCCCEEEEe--------------c--C------C-CccC-CceeeCCEEE
Confidence 11 222233 2 3 6666777775433388876422100 0 0 0 1111 2456778888
Q ss_pred EEecCCcEEEEECCCCC
Q 005502 296 LSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 296 sgs~Dg~V~lwDl~~~~ 312 (693)
+++.++.|+.||+.+++
T Consensus 217 ~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 217 VTSSDGRLYALDLKTGK 233 (238)
T ss_dssp EEETTTEEEEEETTTTE
T ss_pred EEeCCCEEEEEECCCCC
Confidence 88899999999999964
No 416
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.28 E-value=0.0016 Score=70.87 Aligned_cols=100 Identities=18% Similarity=0.150 Sum_probs=84.6
Q ss_pred HHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCc-chhh
Q 005502 367 VEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSF-RAHL 445 (693)
Q Consensus 367 k~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~-KA~~ 445 (693)
...|.-.++.++ +.+|+..|.++++..|.. ...+...+.+|.+. |++.+|+....++++++|.+. .++.
T Consensus 184 ~~la~~~~~~~~-~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~~ 253 (389)
T PRK11788 184 CELAQQALARGD-LDAARALLKKALAADPQC------VRASILLGDLALAQ---GDYAAAIEALERVEEQDPEYLSEVLP 253 (389)
T ss_pred HHHHHHHHhCCC-HHHHHHHHHHHHhHCcCC------HHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHChhhHHHHHH
Confidence 345566678888 999999999999987765 45677888999885 459999999999999999874 5678
Q ss_pred hHHHHHHHhccHHHHHHHHHHHcccCCCCch
Q 005502 446 YMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (693)
Q Consensus 446 r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~ 476 (693)
.++.++..+|++++|.+.++++++..|+...
T Consensus 254 ~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~ 284 (389)
T PRK11788 254 KLMECYQALGDEAEGLEFLRRALEEYPGADL 284 (389)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCchH
Confidence 8899999999999999999999999997643
No 417
>PRK11906 transcriptional regulator; Provisional
Probab=97.26 E-value=0.00071 Score=72.74 Aligned_cols=105 Identities=12% Similarity=0.029 Sum_probs=85.2
Q ss_pred HHHHHhhhhcCC--ChhHHHHhhHHHH---hcccCCCCCcchhhhhhhHHHHHHhc---cc---cCcHHHHHHhHhHhhc
Q 005502 367 VEIARNSLEEGK--HPYYGIEACNEVL---EGHLSGIGPMLRHECLCIRAALLLKR---KW---KNDAQMAIRDCYNARR 435 (693)
Q Consensus 367 k~~gn~~~~~g~--~y~~Ai~~Y~~ai---~~~~~~~~~~~~~~~~~NRA~~~lk~---~~---~~d~~~A~~Dc~~Al~ 435 (693)
...|...+..+. ....|..++.+|+ ...|.. +..|+-+|.||+.+ +| ..+..+|++-+.+|++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~------a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve 332 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLK------TECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD 332 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCccc------HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence 445555543333 1467888899999 666665 78899999999876 34 2355668899999999
Q ss_pred cCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchh
Q 005502 436 IDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 477 (693)
Q Consensus 436 ldp~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~ 477 (693)
+||.++.|++.+|.++.-+++++.|...+++++.++|+.+.+
T Consensus 333 ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~ 374 (458)
T PRK11906 333 ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASL 374 (458)
T ss_pred cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHH
Confidence 999999999999999999999999999999999999998654
No 418
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.22 E-value=0.0033 Score=61.23 Aligned_cols=114 Identities=13% Similarity=-0.018 Sum_probs=91.2
Q ss_pred ccCcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhcc
Q 005502 357 ATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRI 436 (693)
Q Consensus 357 ~~~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~l 436 (693)
...+....-+-..|..+...|+ |.+|...+.+|+.. |.. ...+.-|-|-..|.+|.+ ++..|-....+||++
T Consensus 97 sl~p~~GdVLNNYG~FLC~qg~-~~eA~q~F~~Al~~-P~Y---~~~s~t~eN~G~Cal~~g---q~~~A~~~l~raL~~ 168 (250)
T COG3063 97 SLAPNNGDVLNNYGAFLCAQGR-PEEAMQQFERALAD-PAY---GEPSDTLENLGLCALKAG---QFDQAEEYLKRALEL 168 (250)
T ss_pred hcCCCccchhhhhhHHHHhCCC-hHHHHHHHHHHHhC-CCC---CCcchhhhhhHHHHhhcC---CchhHHHHHHHHHHh
Confidence 3355566667777888888888 99999999988873 322 122567889999999964 488999999999999
Q ss_pred CCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhH
Q 005502 437 DSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA 478 (693)
Q Consensus 437 dp~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~ 478 (693)
||++.-+..-+++-++.-|+|.+|.-.++.....-+-.++..
T Consensus 169 dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL 210 (250)
T COG3063 169 DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESL 210 (250)
T ss_pred CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHH
Confidence 999999999999999999999999999999888777554443
No 419
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.21 E-value=0.002 Score=55.82 Aligned_cols=99 Identities=17% Similarity=0.090 Sum_probs=75.6
Q ss_pred HHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCc------chhhhhhhHHHHHHhccccCcHHHHHHhHhHhh-----
Q 005502 366 LVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPM------LRHECLCIRAALLLKRKWKNDAQMAIRDCYNAR----- 434 (693)
Q Consensus 366 lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~------~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al----- 434 (693)
...+|.+.++.|- |.+|...|.+|++.....+..+ .-+.||.-.+.++.+++. |.++|.-+.+||
T Consensus 12 aLs~ae~ql~~g~-~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgr---y~e~L~sA~~aL~YFNR 87 (144)
T PF12968_consen 12 ALSDAERQLQDGA-YEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGR---YDECLQSADRALRYFNR 87 (144)
T ss_dssp HHHHHHHHHHHT--HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh-HHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHhh
Confidence 3456778888999 9999999999998764433221 224588888999999655 999999999998
Q ss_pred --ccCCC----CcchhhhHHHHHHHhccHHHHHHHHHHHc
Q 005502 435 --RIDSS----SFRAHLYMSEALEQLCKYKEALDFAIAAQ 468 (693)
Q Consensus 435 --~ldp~----~~KA~~r~a~al~~l~~~~eA~~~~~~~~ 468 (693)
+|+.+ ++.|.|.||.|+..+|+.+||+..|+.+-
T Consensus 88 RGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 88 RGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp H--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 45554 47799999999999999999999888653
No 420
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.21 E-value=0.002 Score=72.44 Aligned_cols=57 Identities=18% Similarity=0.162 Sum_probs=49.5
Q ss_pred cCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchh
Q 005502 420 KNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 477 (693)
Q Consensus 420 ~~d~~~A~~Dc~~Al~ldp~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~ 477 (693)
.|++.+|....++|++++|+ .-||+.+|++++..|++++|.+.+++++.++|.+...
T Consensus 433 ~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 433 KGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred cCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 46788999999999999994 6799999999999999999999999999999987653
No 421
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0016 Score=70.69 Aligned_cols=115 Identities=17% Similarity=0.071 Sum_probs=94.8
Q ss_pred hhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCc-chhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcc
Q 005502 364 RMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPM-LRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR 442 (693)
Q Consensus 364 ~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~-~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~K 442 (693)
-.+.+.|.-.|+.+. |.+|+..+..++...+....+. ....++.|.+-+|-|++. +.+||.-.++||.+.|.++.
T Consensus 415 lv~~Elgvvay~~~~-y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~---~~eAI~~~q~aL~l~~k~~~ 490 (611)
T KOG1173|consen 415 LVLHELGVVAYTYEE-YPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK---YEEAIDYYQKALLLSPKDAS 490 (611)
T ss_pred hhhhhhhheeehHhh-hHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh---HHHHHHHHHHHHHcCCCchh
Confidence 345667777888888 9999999999885443321111 245678999999999877 99999999999999999999
Q ss_pred hhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHH
Q 005502 443 AHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVE 482 (693)
Q Consensus 443 A~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~ 482 (693)
+|--.|-++.-+|.++.|.+.|.+++.+.|.|.-+.+.|.
T Consensus 491 ~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 491 THASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 9999999999999999999999999999999976654443
No 422
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.19 E-value=0.0034 Score=67.35 Aligned_cols=98 Identities=21% Similarity=0.017 Sum_probs=61.8
Q ss_pred HHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHH
Q 005502 369 IARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMS 448 (693)
Q Consensus 369 ~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~KA~~r~a 448 (693)
.+.-.++.++ +.+|++.+.+++...|.. ..+..|.|.+|++.+. +.+|++-.+..+.-+|+++-.|.++|
T Consensus 346 ~~~i~~~~nk-~~~A~e~~~kal~l~P~~------~~l~~~~a~all~~g~---~~eai~~L~~~~~~~p~dp~~w~~LA 415 (484)
T COG4783 346 AGDILLEANK-AKEAIERLKKALALDPNS------PLLQLNLAQALLKGGK---PQEAIRILNRYLFNDPEDPNGWDLLA 415 (484)
T ss_pred HHHHHHHcCC-hHHHHHHHHHHHhcCCCc------cHHHHHHHHHHHhcCC---hHHHHHHHHHHhhcCCCCchHHHHHH
Confidence 3444555666 666666666666666554 5566667777777543 66667666666666777777777777
Q ss_pred HHHHHhccHHHHHHHHHHHcccCCCCch
Q 005502 449 EALEQLCKYKEALDFAIAAQCLDPSNSV 476 (693)
Q Consensus 449 ~al~~l~~~~eA~~~~~~~~~~~p~~~~ 476 (693)
+|+..+|+-.+|....-....+.-....
T Consensus 416 qay~~~g~~~~a~~A~AE~~~~~G~~~~ 443 (484)
T COG4783 416 QAYAELGNRAEALLARAEGYALAGRLEQ 443 (484)
T ss_pred HHHHHhCchHHHHHHHHHHHHhCCCHHH
Confidence 7777776666666655555555444333
No 423
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.19 E-value=0.076 Score=54.78 Aligned_cols=173 Identities=18% Similarity=0.199 Sum_probs=92.1
Q ss_pred EEECCCCCEEEEEeC-----CCcEEEEECC-CCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeC-------CCcEEEE
Q 005502 56 ISWNSKGSLLISGSD-----DTHINVWSYS-SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-------DAEVRLF 122 (693)
Q Consensus 56 l~~s~~g~~LaSgs~-----Dg~I~IWd~~-~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~-------Dg~V~vw 122 (693)
-.|+++|++|.+.-. .|.|-|||.. +.+.+..+ ..|.-.-..+.+.|+ +..|+.+-. .|..++
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~-~s~GIGPHel~l~pD--G~tLvVANGGI~Thpd~GR~kL- 131 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEF-PSHGIGPHELLLMPD--GETLVVANGGIETHPDSGRAKL- 131 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEe-cCCCcChhhEEEcCC--CCEEEEEcCCCccCcccCceec-
Confidence 359999999998743 4789999998 56777777 566656677889998 566665531 122221
Q ss_pred EcCCCCCCC--CCCCCCCCcee--e--ccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceE
Q 005502 123 NLSRFSGRG--LDDNAITPSAL--Y--QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (693)
Q Consensus 123 dl~~~~~~~--~~~~~~~~~~~--~--~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~ 196 (693)
++.+..... .+..+.+.+.. + .-|.-+|..|++.++ +..+ .+. +|.-......+ .
T Consensus 132 Nl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~-G~V~-~a~------Q~qg~~~~~~P-----------L 192 (305)
T PF07433_consen 132 NLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGD-GTVA-FAM------QYQGDPGDAPP-----------L 192 (305)
T ss_pred ChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCC-CcEE-EEE------ecCCCCCccCC-----------e
Confidence 111110000 00011111211 2 235667777777763 3332 221 33322222111 1
Q ss_pred EEeccCCceeeecCCC-----CCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCC
Q 005502 197 LLDLRCGAKRSLADPP-----KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL 251 (693)
Q Consensus 197 l~~~~~~~~~~l~~~~-----~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~ 251 (693)
+.-.+.+........+ .-...+-+|++++++....+|+=..+.+.+||..++..+
T Consensus 193 va~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~ 252 (305)
T PF07433_consen 193 VALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLL 252 (305)
T ss_pred EEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEe
Confidence 1111112211111111 112468899999985444556667889999999987644
No 424
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=97.19 E-value=0.0012 Score=69.06 Aligned_cols=107 Identities=17% Similarity=0.144 Sum_probs=85.1
Q ss_pred chhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCC--------CC-c---chhhhhhhHHHHHHhccccCcHHHHHH
Q 005502 361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGI--------GP-M---LRHECLCIRAALLLKRKWKNDAQMAIR 428 (693)
Q Consensus 361 ~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~--------~~-~---~~~~~~~NRA~~~lk~~~~~d~~~A~~ 428 (693)
+.++.....+..+|.+++ |..|+..+..||+++.+.. .. + +.+-+-.....|||+++. ...||.
T Consensus 174 kwl~vAL~das~~yrqk~-ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rk---pdlALn 249 (569)
T PF15015_consen 174 KWLQVALKDASSCYRQKK-YAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRK---PDLALN 249 (569)
T ss_pred HHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCC---CchHHH
Confidence 344555567778899999 9999999999999876420 11 1 111234578999999876 889999
Q ss_pred hHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccC
Q 005502 429 DCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLD 471 (693)
Q Consensus 429 Dc~~Al~ldp~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~ 471 (693)
...+.|-++|.++.-|+|+|-|+..|.+|.||-+.+.-+.-++
T Consensus 250 h~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ymy 292 (569)
T PF15015_consen 250 HSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMY 292 (569)
T ss_pred HHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888776543
No 425
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.18 E-value=0.0048 Score=70.45 Aligned_cols=113 Identities=18% Similarity=0.037 Sum_probs=88.7
Q ss_pred CcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCC------------cchhhhhhhHHHHHHhccc-------
Q 005502 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGP------------MLRHECLCIRAALLLKRKW------- 419 (693)
Q Consensus 359 ~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~------------~~~~~~~~NRA~~~lk~~~------- 419 (693)
....+..+..++|..|..|+ +.+|.+.+.++|+..|....+ .+...|++-..||+++-+-
T Consensus 135 l~~~l~~ll~eAN~lfarg~-~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~l 213 (895)
T KOG2076|consen 135 LAPELRQLLGEANNLFARGD-LEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRL 213 (895)
T ss_pred cCHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 34457889999999999999 999999999999998876211 1112233333455544221
Q ss_pred ------cCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCC
Q 005502 420 ------KNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDP 472 (693)
Q Consensus 420 ------~~d~~~A~~Dc~~Al~ldp~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p 472 (693)
.|.+..|.--..+||+++|.+.+-+++|+.-+.++|++..|++.+.+++.+.|
T Consensus 214 adls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 44567788888899999999999999999999999999999999999999999
No 426
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.16 E-value=0.0021 Score=61.18 Aligned_cols=103 Identities=9% Similarity=0.032 Sum_probs=78.4
Q ss_pred HhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCc---chhhhH
Q 005502 371 RNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSF---RAHLYM 447 (693)
Q Consensus 371 n~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~---KA~~r~ 447 (693)
++.|-... |..+-......++..+. ...+.+|.+.+.++... |++.+|+.-+.+|+.+.|+.. -+++.+
T Consensus 7 ~~~~~~~~-~~~~~~~l~~~~~~~~~----~~~a~~~~~~g~~~~~~---g~~~~A~~~~~~al~l~~~~~~~~~~~~~l 78 (168)
T CHL00033 7 NDNFIDKT-FTIVADILLRILPTTSG----EKEAFTYYRDGMSAQSE---GEYAEALQNYYEAMRLEIDPYDRSYILYNI 78 (168)
T ss_pred cccccccc-cccchhhhhHhccCCch----hHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhccccchhhHHHHHHH
Confidence 55565556 66665555444443322 23466889999999985 559999999999999977643 489999
Q ss_pred HHHHHHhccHHHHHHHHHHHcccCCCCchhHHHH
Q 005502 448 SEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKV 481 (693)
Q Consensus 448 a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~ 481 (693)
|.++..+|++++|++.+++++.+.|.+......+
T Consensus 79 g~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~l 112 (168)
T CHL00033 79 GLIHTSNGEHTKALEYYFQALERNPFLPQALNNM 112 (168)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 9999999999999999999999999886554333
No 427
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.15 E-value=0.0011 Score=49.68 Aligned_cols=44 Identities=20% Similarity=0.261 Sum_probs=34.1
Q ss_pred hhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHHHHH
Q 005502 443 AHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKK 486 (693)
Q Consensus 443 A~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l~~ 486 (693)
-+|.+|.++..||+|.+|+++++.+++++|+|.++......+++
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~ 46 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIED 46 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Confidence 37889999999999999999999999999999766543333333
No 428
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.15 E-value=0.0004 Score=46.68 Aligned_cols=33 Identities=39% Similarity=0.595 Sum_probs=29.3
Q ss_pred chhhhHHHHHHHhccHHHHHHHHHHHcccCCCC
Q 005502 442 RAHLYMSEALEQLCKYKEALDFAIAAQCLDPSN 474 (693)
Q Consensus 442 KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~ 474 (693)
++++.+|.+++.+|++++|+++++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 688999999999999999999999999999975
No 429
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.14 E-value=0.078 Score=62.68 Aligned_cols=211 Identities=10% Similarity=0.086 Sum_probs=126.8
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcC--CCC
Q 005502 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS--RFS 128 (693)
Q Consensus 51 ~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~--~~~ 128 (693)
+.|.++.|..++..+..+..+|.|.+-|..+..... + ..-...|.+++|+|+ ++.++.....+++.+-.-. .-.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-v-g~vd~GI~aaswS~D--ee~l~liT~~~tll~mT~~f~~i~ 144 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEI-V-GNVDNGISAASWSPD--EELLALITGRQTLLFMTKDFEPIA 144 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceee-e-eeccCceEEEeecCC--CcEEEEEeCCcEEEEEeccccchh
Confidence 589999999999999999999999999988764322 1 234678999999999 6888888877777654321 000
Q ss_pred CCCC-----------CCCCCCCceeecc---------------------CCCCeEEEEEecCCCcEEEEEe----CC-Cc
Q 005502 129 GRGL-----------DDNAITPSALYQC---------------------HTRRVKKLAVEVGNPHVVWSAS----ED-GT 171 (693)
Q Consensus 129 ~~~~-----------~~~~~~~~~~~~~---------------------h~~~V~~l~~sp~~~~~l~Sgs----~D-g~ 171 (693)
.+.. ...-.+....+.+ -.+.=+.|.|-- ++.+|++.. .+ ..
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG-DGEYFAVSFVESETGTRK 223 (1265)
T ss_pred ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc-CCcEEEEEEEeccCCcee
Confidence 0000 0000000001110 111224578876 667887732 23 78
Q ss_pred EEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEE---eCCCcEEEEecCCC
Q 005502 172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVG---GSDAFARLYDRRML 248 (693)
Q Consensus 172 V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latg---s~Dg~I~lwD~r~~ 248 (693)
|++||.. +..- . ... .....-.+++|-|. |.++++- .+|+.|.+|..+-.
T Consensus 224 irV~drE-g~Ln----------------s-------~se--~~~~l~~~LsWkPs-gs~iA~iq~~~sd~~IvffErNGL 276 (1265)
T KOG1920|consen 224 IRVYDRE-GALN----------------S-------TSE--PVEGLQHSLSWKPS-GSLIAAIQCKTSDSDIVFFERNGL 276 (1265)
T ss_pred EEEeccc-chhh----------------c-------ccC--cccccccceeecCC-CCeEeeeeecCCCCcEEEEecCCc
Confidence 9999976 2210 0 000 01122357899996 5677664 35778999987643
Q ss_pred CCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEE---EecCCcEEEEECCCC
Q 005502 249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL---SYSGEHVYLMDVNHA 311 (693)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~s---gs~Dg~V~lwDl~~~ 311 (693)
.. ..+.. +... ....|..++|+.++..|++ ......|++|-+.+-
T Consensus 277 ~h-g~f~l------------~~p~-----de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 277 RH-GEFVL------------PFPL-----DEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred cc-ccccc------------CCcc-----cccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 21 11100 0000 1113889999999999987 444556999998883
No 430
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.12 E-value=0.0021 Score=56.70 Aligned_cols=68 Identities=25% Similarity=0.174 Sum_probs=60.6
Q ss_pred hhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCC---cchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCch
Q 005502 406 CLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS---FRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (693)
Q Consensus 406 ~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~---~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~ 476 (693)
.+.+.+..+++. |++.+|+..+.++++.+|++ ..+++.+|.++.+.+++++|+..++.++..+|++..
T Consensus 4 ~~~~~~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 74 (119)
T TIGR02795 4 AYYDAALLVLKA---GDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPK 74 (119)
T ss_pred HHHHHHHHHHHc---CCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCc
Confidence 467788888885 55999999999999999987 579999999999999999999999999999998643
No 431
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.11 E-value=0.047 Score=59.26 Aligned_cols=197 Identities=16% Similarity=0.097 Sum_probs=108.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceE-EEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCC
Q 005502 61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVF-CTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITP 139 (693)
Q Consensus 61 ~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~-sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~ 139 (693)
.+..+++++.++.|.-+|..+++.+-....+- .+. .... . +..++.++.++.|..+|..++. .
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~--~~~~~p~v--~--~~~v~v~~~~g~l~ald~~tG~----------~ 127 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDE--RLSGGVGA--D--GGLVFVGTEKGEVIALDAEDGK----------E 127 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCC--CcccceEE--c--CCEEEEEcCCCEEEEEECCCCc----------E
Confidence 36688888899999999999998876653221 121 1211 2 4678888899999999997642 2
Q ss_pred ceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceE
Q 005502 140 SALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLK 219 (693)
Q Consensus 140 ~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~ 219 (693)
+..... ...+.+..... + ..++.++.+|.|..||.++++. +|......... ..... .
T Consensus 128 ~W~~~~-~~~~~~~p~v~-~-~~v~v~~~~g~l~a~d~~tG~~--------------~W~~~~~~~~~--~~~~~----~ 184 (377)
T TIGR03300 128 LWRAKL-SSEVLSPPLVA-N-GLVVVRTNDGRLTALDAATGER--------------LWTYSRVTPAL--TLRGS----A 184 (377)
T ss_pred eeeecc-CceeecCCEEE-C-CEEEEECCCCeEEEEEcCCCce--------------eeEEccCCCce--eecCC----C
Confidence 222221 12222111111 3 3555677899999999988752 33322211000 00000 0
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCC-cccccccCccccCCCCccceEEEEEcCCCCEEEEEe
Q 005502 220 SCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP-CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY 298 (693)
Q Consensus 220 sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs 298 (693)
+..+. +..++++..++.+..+|.++++.+........... .... +.. .. ....+ .+..+++++
T Consensus 185 sp~~~---~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~-----~~~--~~----~~p~~--~~~~vy~~~ 248 (377)
T TIGR03300 185 SPVIA---DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELER-----LVD--VD----GDPVV--DGGQVYAVS 248 (377)
T ss_pred CCEEE---CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhh-----hhc--cC----CccEE--ECCEEEEEE
Confidence 11111 13677888899999999988764432211000000 0000 000 00 00111 256788888
Q ss_pred cCCcEEEEECCCCC
Q 005502 299 SGEHVYLMDVNHAG 312 (693)
Q Consensus 299 ~Dg~V~lwDl~~~~ 312 (693)
.+|.++.||..+++
T Consensus 249 ~~g~l~a~d~~tG~ 262 (377)
T TIGR03300 249 YQGRVAALDLRSGR 262 (377)
T ss_pred cCCEEEEEECCCCc
Confidence 89999999998864
No 432
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.11 E-value=0.002 Score=72.40 Aligned_cols=111 Identities=10% Similarity=0.178 Sum_probs=85.5
Q ss_pred EEEEEECCCCCEEEEEeC----CCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCC
Q 005502 53 VNAISWNSKGSLLISGSD----DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 128 (693)
Q Consensus 53 V~~l~~s~~g~~LaSgs~----Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~ 128 (693)
-+-++|+|...+||+++- -|.|.||- ++|++.+.+. ..-.+++++|+|. .-.|+.|-.-|.+.+|.....
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt--~P~hatSLCWHpe--~~vLa~gwe~g~~~v~~~~~~- 91 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT--YPVHATSLCWHPE--EFVLAQGWEMGVSDVQKTNTT- 91 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc--cceehhhhccChH--HHHHhhccccceeEEEecCCc-
Confidence 344689999999998873 47788885 5666555442 2234678999998 467888888899999998853
Q ss_pred CCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 005502 129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (693)
Q Consensus 129 ~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~ 179 (693)
+.-.....|..+|..+.|+| ++..++|+..-|.|.+|....
T Consensus 92 ---------e~htv~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 92 ---------ETHTVVETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred ---------eeeeeccCCCCCceeEEecC-CCCeEEEcCCCceeEEEEeee
Confidence 33444557999999999999 678888999999999997653
No 433
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.02 Score=64.98 Aligned_cols=167 Identities=19% Similarity=0.242 Sum_probs=106.3
Q ss_pred EEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCC-eEEEEEecCCCcEEEEEeCCCc-----EE
Q 005502 100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR-VKKLAVEVGNPHVVWSASEDGT-----LR 173 (693)
Q Consensus 100 ~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~sp~~~~~l~Sgs~Dg~-----V~ 173 (693)
+|++. +..+|.|+.+|.|.+.+-.. ..+..++.+... |..+.... +.++|++.++|+. |+
T Consensus 30 c~~s~--~~~vvigt~~G~V~~Ln~s~-----------~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llk 95 (933)
T KOG2114|consen 30 CCSSS--TGSVVIGTADGRVVILNSSF-----------QLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLK 95 (933)
T ss_pred EEcCC--CceEEEeeccccEEEecccc-----------eeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEE
Confidence 35555 57999999999888877653 334677777777 55554443 5578888888764 89
Q ss_pred EEeCCCCCCCCCCCCCCcccc--eEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCC
Q 005502 174 QHDFRQGSSCPPAGSSHQECR--NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL 251 (693)
Q Consensus 174 iwDlr~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~ 251 (693)
+||+....... .+.|. ..++.. ..|....++.+++++.+ -..+|+|-.+|.|.++.-.-.+..
T Consensus 96 iw~lek~~~n~-----sP~c~~~~ri~~~---------~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDr 160 (933)
T KOG2114|consen 96 IWDLEKVDKNN-----SPQCLYEHRIFTI---------KNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDR 160 (933)
T ss_pred EecccccCCCC-----Ccceeeeeeeecc---------CCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhcc
Confidence 99997653210 01221 111111 11234568889999987 689999999999999853321111
Q ss_pred cccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCC
Q 005502 252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~ 312 (693)
.+ +.. .. -....+||.++|..+++.++-...-.+|.+|.+....
T Consensus 161 gs-----------r~~----~~--~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~ 204 (933)
T KOG2114|consen 161 GS-----------RQD----YS--HRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT 204 (933)
T ss_pred cc-----------cee----ee--ccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC
Confidence 00 000 00 0122379999999999885555566789999998533
No 434
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.09 E-value=0.00082 Score=53.23 Aligned_cols=65 Identities=17% Similarity=0.099 Sum_probs=54.9
Q ss_pred hhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHH
Q 005502 374 LEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMS 448 (693)
Q Consensus 374 ~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~KA~~r~a 448 (693)
++.|+ |.+|+..|.+++...|.+ ...+.+.|.||++. |++.+|..-+.+++..+|++...+.-+|
T Consensus 2 l~~~~-~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~---g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGD-YDEAIELLEKALQRNPDN------PEARLLLAQCYLKQ---GQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTH-HHHHHHHHHHHHHHTTTS------HHHHHHHHHHHHHT---T-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccC-HHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 56788 999999999999999987 77888999999995 5599999999999999999754444333
No 435
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.07 E-value=0.0031 Score=64.16 Aligned_cols=98 Identities=13% Similarity=0.079 Sum_probs=79.8
Q ss_pred hhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHHHH
Q 005502 373 SLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALE 452 (693)
Q Consensus 373 ~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~KA~~r~a~al~ 452 (693)
.++..++|..||+.-.+..+..+....-++ +-+||-.|..++-. .|+..|..-..+|++-||+.++|-.-+++...
T Consensus 150 IYQ~treW~KAId~A~~L~k~~~q~~~~eI-AqfyCELAq~~~~~---~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~ 225 (389)
T COG2956 150 IYQATREWEKAIDVAERLVKLGGQTYRVEI-AQFYCELAQQALAS---SDVDRARELLKKALQADKKCVRASIILGRVEL 225 (389)
T ss_pred HHHHhhHHHHHHHHHHHHHHcCCccchhHH-HHHHHHHHHHHhhh---hhHHHHHHHHHHHHhhCccceehhhhhhHHHH
Confidence 344444477777766666665554433333 66899999999885 44899999999999999999999999999999
Q ss_pred HhccHHHHHHHHHHHcccCCCC
Q 005502 453 QLCKYKEALDFAIAAQCLDPSN 474 (693)
Q Consensus 453 ~l~~~~eA~~~~~~~~~~~p~~ 474 (693)
..|+|+.|.+.++.+++.+|++
T Consensus 226 ~~g~y~~AV~~~e~v~eQn~~y 247 (389)
T COG2956 226 AKGDYQKAVEALERVLEQNPEY 247 (389)
T ss_pred hccchHHHHHHHHHHHHhChHH
Confidence 9999999999999999999987
No 436
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.04 E-value=0.0032 Score=58.42 Aligned_cols=94 Identities=17% Similarity=0.104 Sum_probs=58.9
Q ss_pred HHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhh
Q 005502 366 LVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHL 445 (693)
Q Consensus 366 lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~KA~~ 445 (693)
....+...+..|+ |.+|+..|.+++...+ ++.++.....+.|.+++.. |++.+|+.-... +.-.+-...++.
T Consensus 51 ~l~lA~~~~~~g~-~~~A~~~l~~~~~~~~---d~~l~~~a~l~LA~~~~~~---~~~d~Al~~L~~-~~~~~~~~~~~~ 122 (145)
T PF09976_consen 51 ALQLAKAAYEQGD-YDEAKAALEKALANAP---DPELKPLARLRLARILLQQ---GQYDEALATLQQ-IPDEAFKALAAE 122 (145)
T ss_pred HHHHHHHHHHCCC-HHHHHHHHHHHHhhCC---CHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHh-ccCcchHHHHHH
Confidence 3445666677777 7777777777776542 2345555666667777764 347777666644 333333345566
Q ss_pred hHHHHHHHhccHHHHHHHHHHH
Q 005502 446 YMSEALEQLCKYKEALDFAIAA 467 (693)
Q Consensus 446 r~a~al~~l~~~~eA~~~~~~~ 467 (693)
.+|.++...|++++|...|+++
T Consensus 123 ~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 123 LLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHCCCHHHHHHHHHHh
Confidence 6777777777777777777665
No 437
>PRK14574 hmsH outer membrane protein; Provisional
Probab=96.96 E-value=0.0052 Score=72.70 Aligned_cols=115 Identities=10% Similarity=-0.108 Sum_probs=77.7
Q ss_pred CcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCC-------------Ccchhhhhhh-------------H--
Q 005502 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIG-------------PMLRHECLCI-------------R-- 410 (693)
Q Consensus 359 ~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~-------------~~~~~~~~~N-------------R-- 410 (693)
.+.........+...+.+|+ |..|++.+.++++..|.... ..-.+.-|++ +
T Consensus 30 ~p~~~~~~y~~aii~~r~Gd-~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llal 108 (822)
T PRK14574 30 NPAMADTQYDSLIIRARAGD-TAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASA 108 (822)
T ss_pred CccchhHHHHHHHHHHhCCC-HHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHH
Confidence 34455566778888999999 99999999999998887510 0000111111 2
Q ss_pred HHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchh
Q 005502 411 AALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 477 (693)
Q Consensus 411 A~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~ 477 (693)
|..|.. .|++..|+.-+.++++++|+++.+++-++.++..+++.++|++.++++..++|.+...
T Consensus 109 A~ly~~---~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~ 172 (822)
T PRK14574 109 ARAYRN---EKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY 172 (822)
T ss_pred HHHHHH---cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH
Confidence 223333 3557777777777777777777777777777777777777777777777777775543
No 438
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.94 E-value=0.038 Score=47.95 Aligned_cols=104 Identities=22% Similarity=0.167 Sum_probs=71.3
Q ss_pred ceEEEEEeeCCCC--CEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcE
Q 005502 95 NVFCTKFVPETSD--ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTL 172 (693)
Q Consensus 95 ~I~sl~f~p~~~~--~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V 172 (693)
+|+++++..-.++ +.|++|+.|..||+|+-. +.+..+. -...|+.|+-.. +..|+.+..+|+|
T Consensus 1 ~V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~------------e~~~Ei~-e~~~v~~L~~~~--~~~F~Y~l~NGTV 65 (111)
T PF14783_consen 1 NVTALCLFDFDGDGENELLVGSDDFEIRVFKGD------------EIVAEIT-ETDKVTSLCSLG--GGRFAYALANGTV 65 (111)
T ss_pred CeeEEEEEecCCCCcceEEEecCCcEEEEEeCC------------cEEEEEe-cccceEEEEEcC--CCEEEEEecCCEE
Confidence 4778888764322 689999999999999877 3355555 356777777665 3679999999999
Q ss_pred EEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEE---cCCCCcEEEEEeCCCcEE
Q 005502 173 RQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI---SSTRPHLLLVGGSDAFAR 241 (693)
Q Consensus 173 ~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~---sp~~~~~Latgs~Dg~I~ 241 (693)
-+|+-.. .+|...+. ..+.++.+ +.++..-|++|-.+|.|-
T Consensus 66 GvY~~~~----------------RlWRiKSK------------~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 66 GVYDRSQ----------------RLWRIKSK------------NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEeCcc----------------eeeeeccC------------CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 9998532 34433322 12444444 444445799999999874
No 439
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.94 E-value=0.0023 Score=61.43 Aligned_cols=88 Identities=19% Similarity=0.078 Sum_probs=74.0
Q ss_pred hhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhccHHH
Q 005502 380 PYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKE 459 (693)
Q Consensus 380 y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~KA~~r~a~al~~l~~~~e 459 (693)
+..|---+++++.+.|+- +..|+-.+.-++. .|||.+|..-.+..++|||.+--|+..||.++.--|+|.-
T Consensus 81 ~~LAR~DftQaLai~P~m------~~vfNyLG~Yl~~---a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~L 151 (297)
T COG4785 81 RALARNDFSQALAIRPDM------PEVFNYLGIYLTQ---AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKL 151 (297)
T ss_pred HHHHhhhhhhhhhcCCCc------HHHHHHHHHHHHh---cccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHh
Confidence 355666688889888765 5555555554445 5789999999999999999999999999999999999999
Q ss_pred HHHHHHHHcccCCCCch
Q 005502 460 ALDFAIAAQCLDPSNSV 476 (693)
Q Consensus 460 A~~~~~~~~~~~p~~~~ 476 (693)
|.+++.+..+-+|+++=
T Consensus 152 Aq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 152 AQDDLLAFYQDDPNDPF 168 (297)
T ss_pred hHHHHHHHHhcCCCChH
Confidence 99999999999998864
No 440
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.94 E-value=0.00077 Score=55.13 Aligned_cols=64 Identities=17% Similarity=0.110 Sum_probs=54.5
Q ss_pred hhhhhhHHHHHHhccccCcHHHHHHhHhHhhcc----C---CCCcchhhhHHHHHHHhccHHHHHHHHHHHccc
Q 005502 404 HECLCIRAALLLKRKWKNDAQMAIRDCYNARRI----D---SSSFRAHLYMSEALEQLCKYKEALDFAIAAQCL 470 (693)
Q Consensus 404 ~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~l----d---p~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~ 470 (693)
+.+|.|.|.+|..+ |++..|+..+.+||++ . |.-..+++.+|.++..+|++++|++.+++++++
T Consensus 5 a~~~~~la~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYREL---GRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHT---T-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 67899999999996 5599999999999966 2 233678999999999999999999999988754
No 441
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.93 E-value=0.0032 Score=67.90 Aligned_cols=90 Identities=24% Similarity=0.267 Sum_probs=75.5
Q ss_pred HhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHH
Q 005502 371 RNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEA 450 (693)
Q Consensus 371 n~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~KA~~r~a~a 450 (693)
.-++..++ ..+||....++|...|.. +.++.--|..+++.+ ++..|+.=+.+|.++.|+..++++.+|+|
T Consensus 208 ~v~l~~~~-E~~AI~ll~~aL~~~p~d------~~LL~~Qa~fLl~k~---~~~lAL~iAk~av~lsP~~f~~W~~La~~ 277 (395)
T PF09295_consen 208 RVYLLMNE-EVEAIRLLNEALKENPQD------SELLNLQAEFLLSKK---KYELALEIAKKAVELSPSEFETWYQLAEC 277 (395)
T ss_pred HHHHhcCc-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 33444555 779999999999887766 677777888888854 49999999999999999999999999999
Q ss_pred HHHhccHHHHHHHHHHHccc
Q 005502 451 LEQLCKYKEALDFAIAAQCL 470 (693)
Q Consensus 451 l~~l~~~~eA~~~~~~~~~~ 470 (693)
|..+|++++|+..+..+=..
T Consensus 278 Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 278 YIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHhcCCHHHHHHHHhcCcCC
Confidence 99999999999888755433
No 442
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.93 E-value=0.0083 Score=64.46 Aligned_cols=110 Identities=17% Similarity=0.096 Sum_probs=88.4
Q ss_pred HHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhh
Q 005502 367 VEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLY 446 (693)
Q Consensus 367 k~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~KA~~r 446 (693)
.-.+...+..++ +..|.....+.|...|++ +-+..-++..+++.+. ..+|+.-..+|+.++|+..--.+.
T Consensus 310 YG~A~~~~~~~~-~d~A~~~l~~L~~~~P~N------~~~~~~~~~i~~~~nk---~~~A~e~~~kal~l~P~~~~l~~~ 379 (484)
T COG4783 310 YGRALQTYLAGQ-YDEALKLLQPLIAAQPDN------PYYLELAGDILLEANK---AKEAIERLKKALALDPNSPLLQLN 379 (484)
T ss_pred HHHHHHHHHhcc-cchHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCccHHHHH
Confidence 334455666677 777777777777777776 5566677888888655 999999999999999999777788
Q ss_pred HHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHHHHH
Q 005502 447 MSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKK 486 (693)
Q Consensus 447 ~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l~~ 486 (693)
+|++|+++|++.+|...++..+..+|+++..-..+.+...
T Consensus 380 ~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~ 419 (484)
T COG4783 380 LAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYA 419 (484)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHH
Confidence 9999999999999999999999999999877555544433
No 443
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.91 E-value=0.0098 Score=67.03 Aligned_cols=71 Identities=13% Similarity=0.258 Sum_probs=61.9
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCC
Q 005502 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 126 (693)
Q Consensus 53 V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~ 126 (693)
+++|+|+|..-.||+|-.-|.+.+|...+.+. +++...|+.+|..+.|+|+ |..++|+..-|.|.+|....
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~-htv~~th~a~i~~l~wS~~--G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET-HTVVETHPAPIQGLDWSHD--GTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCcee-eeeccCCCCCceeEEecCC--CCeEEEcCCCceeEEEEeee
Confidence 56799999999999999999999999876544 4444789999999999999 79999999999999998763
No 444
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.91 E-value=0.0034 Score=60.11 Aligned_cols=73 Identities=11% Similarity=0.040 Sum_probs=64.0
Q ss_pred hhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCC---cchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhH
Q 005502 403 RHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS---FRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA 478 (693)
Q Consensus 403 ~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~---~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~ 478 (693)
.+..|.++|..|+.. |++.+|+.-+.+|+++.|+. ..+++.+|.++..+|++++|++.+++++.+.|.+....
T Consensus 34 ~a~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 109 (172)
T PRK02603 34 EAFVYYRDGMSAQAD---GEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSAL 109 (172)
T ss_pred hHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence 366889999999885 66999999999999988764 36899999999999999999999999999999876543
No 445
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.89 E-value=0.16 Score=51.46 Aligned_cols=184 Identities=15% Similarity=0.152 Sum_probs=118.1
Q ss_pred eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcC
Q 005502 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (693)
Q Consensus 46 l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~ 125 (693)
+.|-+..|.+|.|+|+.+.|++..+...-.||=..+|+.+.++....-...-.|.|... ++++++--.++.+.++.+.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~--n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGG--NQFVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecC--CEEEEEehhcceEEEEEEc
Confidence 44556669999999999988888888888888778899999885444455667888876 5777777788999988887
Q ss_pred CCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCce
Q 005502 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (693)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (693)
............-++..........-.++|.|. .+.|+.+-+-.-+.||.+......- ..+ ...+...
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~-~~~l~~aKEr~P~~I~~~~~~~~~l---~~~-----~~~~~~~--- 226 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPV-DHRLFVAKERNPIGIFEVTQSPSSL---SVH-----ASLDPTA--- 226 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCCC-CceEEEEEccCCcEEEEEecCCccc---ccc-----cccCccc---
Confidence 542211100000112222222566788999994 4666677777777777765432110 000 0000000
Q ss_pred eeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCC
Q 005502 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (693)
Q Consensus 206 ~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~ 247 (693)
...-....|.++.|++..+++|+.+..++.+.-.|+.-
T Consensus 227 ----~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 227 ----DRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred ----ccceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 00001235778899988788888888888888888763
No 446
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.88 E-value=0.011 Score=54.71 Aligned_cols=101 Identities=28% Similarity=0.197 Sum_probs=70.8
Q ss_pred hhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcc---------h-------hhhhhhHHHHHHhccccCcHHHHH
Q 005502 364 RMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPML---------R-------HECLCIRAALLLKRKWKNDAQMAI 427 (693)
Q Consensus 364 ~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~---------~-------~~~~~NRA~~~lk~~~~~d~~~A~ 427 (693)
+.+...+......+. ...++..|.+++..+....-+.+ + ..++...+..++. .|++..|+
T Consensus 7 ~~~~~~a~~~~~~~~-~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~---~~~~~~a~ 82 (146)
T PF03704_consen 7 EALVREARAAARAGD-PEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLE---AGDYEEAL 82 (146)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH---TT-HHHHH
T ss_pred HHHHHHHHHHHHCCC-HHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCHHHHH
Confidence 444555666667777 88999999999988754321110 0 1122334444444 47799999
Q ss_pred HhHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHc
Q 005502 428 RDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQ 468 (693)
Q Consensus 428 ~Dc~~Al~ldp~~~KA~~r~a~al~~l~~~~eA~~~~~~~~ 468 (693)
..|.+++.+||.+-.+|..+.++|..+|++.+|++.|+++.
T Consensus 83 ~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 83 RLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998764
No 447
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.86 E-value=0.0018 Score=68.14 Aligned_cols=107 Identities=15% Similarity=0.092 Sum_probs=61.5
Q ss_pred hhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcc
Q 005502 363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR 442 (693)
Q Consensus 363 a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~K 442 (693)
+..+..+||-.|..|+ |..|.+.|.+||.-...+ ...+.|-+..+-+++. ..+|+.-..+--.+--+++.
T Consensus 490 ~~a~~nkgn~~f~ngd-~dka~~~ykeal~ndasc------~ealfniglt~e~~~~---ldeald~f~klh~il~nn~e 559 (840)
T KOG2003|consen 490 AAALTNKGNIAFANGD-LDKAAEFYKEALNNDASC------TEALFNIGLTAEALGN---LDEALDCFLKLHAILLNNAE 559 (840)
T ss_pred HHHhhcCCceeeecCc-HHHHHHHHHHHHcCchHH------HHHHHHhcccHHHhcC---HHHHHHHHHHHHHHHHhhHH
Confidence 4556778999999999 999999999999755433 2223344444444322 44444333332222334455
Q ss_pred hhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHH
Q 005502 443 AHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAE 479 (693)
Q Consensus 443 A~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~ 479 (693)
.++..|..|+.|++..+|++.+.++..+-|+++.+..
T Consensus 560 vl~qianiye~led~aqaie~~~q~~slip~dp~ils 596 (840)
T KOG2003|consen 560 VLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILS 596 (840)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHH
Confidence 5555555555555555555555555555555544433
No 448
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.86 E-value=0.062 Score=62.60 Aligned_cols=207 Identities=14% Similarity=0.164 Sum_probs=118.5
Q ss_pred EeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCC-----CCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCcee
Q 005502 68 GSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS-----DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSAL 142 (693)
Q Consensus 68 gs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~-----~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~ 142 (693)
......|.-.|+++|+.+.........+|.+ |.|++. +.-.+.|-.+..+..||.+....... ....+.
T Consensus 500 ~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v----~~~~k~ 573 (794)
T PF08553_consen 500 PNNPNKLYKMDLERGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLV----DSQSKQ 573 (794)
T ss_pred CCCCCceEEEecCCCcEEEEeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCCCcee----eccccc
Confidence 3456778889999999999885433334544 444321 23456677788999999996431110 001112
Q ss_pred eccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEE
Q 005502 143 YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCD 222 (693)
Q Consensus 143 ~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~ 222 (693)
+ .......|++.+. .-.||.|+.+|.||+||- .+.. .-...|+-..+|..|.
T Consensus 574 Y-~~~~~Fs~~aTt~--~G~iavgs~~G~IRLyd~-~g~~------------------------AKT~lp~lG~pI~~iD 625 (794)
T PF08553_consen 574 Y-SSKNNFSCFATTE--DGYIAVGSNKGDIRLYDR-LGKR------------------------AKTALPGLGDPIIGID 625 (794)
T ss_pred c-ccCCCceEEEecC--CceEEEEeCCCcEEeecc-cchh------------------------hhhcCCCCCCCeeEEE
Confidence 2 2344567777765 347889999999999992 2211 1112233456899999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEecC--CCCCC------cccccCCCCCCcccccccCccccC---CCCccceEEEEEcC--
Q 005502 223 ISSTRPHLLLVGGSDAFARLYDRR--MLPPL------TSCQKRMSPPPCVNYFCPMHLSEH---GRSSLHLTHVTFSP-- 289 (693)
Q Consensus 223 ~sp~~~~~Latgs~Dg~I~lwD~r--~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~~V~~v~fsp-- 289 (693)
++.+ |+++++.| +.++.|++.. .++.. ..+.....|.+-...+.|.|...- .......+...|+-
T Consensus 626 vt~D-GkwilaTc-~tyLlLi~t~~~~g~~~g~~GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a~Fnt~~ 703 (794)
T PF08553_consen 626 VTAD-GKWILATC-KTYLLLIDTLIKDGKNSGKLGFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPAKFNTGI 703 (794)
T ss_pred ecCC-CcEEEEee-cceEEEEEEeeecCCccCccccccccCccCCCCCeEEecCHHHHHHHHhccCCCceeeceEEecCC
Confidence 9998 56655544 5688888864 22111 112222233333334444443211 11112345666753
Q ss_pred C-CCEEEEEecCCcEEEEECCC
Q 005502 290 N-GEEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 290 d-g~~L~sgs~Dg~V~lwDl~~ 310 (693)
+ ....++++.+..+.+||+..
T Consensus 704 ~~~E~~IvtstG~f~v~Wnf~k 725 (794)
T PF08553_consen 704 GKQETSIVTSTGPFVVTWNFKK 725 (794)
T ss_pred CCccceEEEeccCEEEEEEHHH
Confidence 1 23455566677999999876
No 449
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.84 E-value=0.097 Score=52.46 Aligned_cols=192 Identities=19% Similarity=0.195 Sum_probs=104.5
Q ss_pred CCCcEEEEECCCCcEEEEeccCC-CcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCC
Q 005502 70 DDTHINVWSYSSRKLLHSIETGH-SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR 148 (693)
Q Consensus 70 ~Dg~I~IWd~~~~~~~~~l~~~h-~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~ 148 (693)
++|+|..||..+++.+-....+. .....+.. .+. +..+++++.++.|..||..++ +.+..+.. ..
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~-~~~--~~~v~~~~~~~~l~~~d~~tG----------~~~W~~~~-~~ 66 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATA-VPD--GGRVYVASGDGNLYALDAKTG----------KVLWRFDL-PG 66 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETE-EEE--TTEEEEEETTSEEEEEETTTS----------EEEEEEEC-SS
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceE-EEe--CCEEEEEcCCCEEEEEECCCC----------CEEEEeec-cc
Confidence 47899999999999888773321 12222222 223 467777789999999999865 33444443 22
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEec-cCCceeeecCCCCCccceEEEEEcCCC
Q 005502 149 RVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL-RCGAKRSLADPPKQTLSLKSCDISSTR 227 (693)
Q Consensus 149 ~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~l~~~~~~~~~v~sl~~sp~~ 227 (693)
.+...... .+..++.++.++.|+.+|..+++ .+|.. .... ............+.
T Consensus 67 ~~~~~~~~--~~~~v~v~~~~~~l~~~d~~tG~--------------~~W~~~~~~~------~~~~~~~~~~~~~~--- 121 (238)
T PF13360_consen 67 PISGAPVV--DGGRVYVGTSDGSLYALDAKTGK--------------VLWSIYLTSS------PPAGVRSSSSPAVD--- 121 (238)
T ss_dssp CGGSGEEE--ETTEEEEEETTSEEEEEETTTSC--------------EEEEEEE-SS------CTCSTB--SEEEEE---
T ss_pred cccceeee--cccccccccceeeeEecccCCcc--------------eeeeeccccc------cccccccccCceEe---
Confidence 21111122 23455566688899999988875 34431 1110 00000111122222
Q ss_pred CcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEE
Q 005502 228 PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMD 307 (693)
Q Consensus 228 ~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwD 307 (693)
+..++++..++.|..+|+.+++.+........+.... . +....+..-....++ .++++..++.+.-+|
T Consensus 122 ~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~-------~----~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d 189 (238)
T PF13360_consen 122 GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP-------I----SSFSDINGSPVISDG-RVYVSSGDGRVVAVD 189 (238)
T ss_dssp TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS---------E----EEETTEEEEEECCTT-EEEEECCTSSEEEEE
T ss_pred cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc-------e----eeecccccceEEECC-EEEEEcCCCeEEEEE
Confidence 4578888889999999999987654443211110000 0 000012222222344 777777777644449
Q ss_pred CCCCC
Q 005502 308 VNHAG 312 (693)
Q Consensus 308 l~~~~ 312 (693)
+.+++
T Consensus 190 ~~tg~ 194 (238)
T PF13360_consen 190 LATGE 194 (238)
T ss_dssp TTTTE
T ss_pred CCCCC
Confidence 99965
No 450
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.83 E-value=0.062 Score=46.65 Aligned_cols=101 Identities=18% Similarity=0.178 Sum_probs=71.3
Q ss_pred EEEEEECC---CC-CEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCC
Q 005502 53 VNAISWNS---KG-SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 128 (693)
Q Consensus 53 V~~l~~s~---~g-~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~ 128 (693)
|++|++.. +| +.|++||+|..|+||+-. ..+..+ .-.+.|++++-... ..|+.+-.+|+|-+|+-...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei--~e~~~v~~L~~~~~---~~F~Y~l~NGTVGvY~~~~R- 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEI--TETDKVTSLCSLGG---GRFAYALANGTVGVYDRSQR- 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEE--ecccceEEEEEcCC---CEEEEEecCCEEEEEeCcce-
Confidence 66777665 33 589999999999999944 567766 34567888888776 68999999999999987632
Q ss_pred CCCCCCCCCCCceeeccCCCCeEEEEEecCC---CcEEEEEeCCCcEE
Q 005502 129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGN---PHVVWSASEDGTLR 173 (693)
Q Consensus 129 ~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~---~~~l~Sgs~Dg~V~ 173 (693)
+...+. ...+.++++..-+ -.-|++|-.+|.|-
T Consensus 74 -----------lWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 74 -----------LWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -----------eeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 333332 3347777765422 23677888888763
No 451
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.78 E-value=0.0012 Score=44.49 Aligned_cols=33 Identities=15% Similarity=0.111 Sum_probs=29.1
Q ss_pred hhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCC
Q 005502 405 ECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS 440 (693)
Q Consensus 405 ~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~ 440 (693)
.+|.|+|.+|++++ ++.+|+..|.+||+++|++
T Consensus 2 ~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLG---DYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT----HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhC---CchHHHHHHHHHHHHCcCC
Confidence 47899999999964 5999999999999999974
No 452
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.76 E-value=0.0091 Score=64.10 Aligned_cols=109 Identities=13% Similarity=-0.018 Sum_probs=84.6
Q ss_pred hhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCC-------------------------------CcchhhhhhhH
Q 005502 362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIG-------------------------------PMLRHECLCIR 410 (693)
Q Consensus 362 ~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~-------------------------------~~~~~~~~~NR 410 (693)
..+....++...+..|+ +..|+..+.++++..|.+.. .+.....+.+.
T Consensus 42 ~~e~~~~~a~~~~~~g~-~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 120 (355)
T cd05804 42 ERERAHVEALSAWIAGD-LPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGML 120 (355)
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHH
Confidence 34445556777888888 88999999888887665310 00001133466
Q ss_pred HHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCC
Q 005502 411 AALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSN 474 (693)
Q Consensus 411 A~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~ 474 (693)
|.+++.. |++..|+.-+.++++++|++.-+++.+|.++..+|++++|...+++++...|..
T Consensus 121 a~~~~~~---G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~ 181 (355)
T cd05804 121 AFGLEEA---GQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS 181 (355)
T ss_pred HHHHHHc---CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC
Confidence 6677775 559999999999999999999999999999999999999999999999988754
No 453
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.75 E-value=0.0062 Score=69.59 Aligned_cols=102 Identities=12% Similarity=0.021 Sum_probs=86.2
Q ss_pred chhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCC
Q 005502 361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS 440 (693)
Q Consensus 361 ~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~ 440 (693)
+....+.+.+..+...|+ |.+|+.+++..+...+.. ...+|.+.|-||+.++. +..|+.-..++|.++|.+
T Consensus 412 d~~dL~~d~a~al~~~~~-~~~Al~~l~~i~~~~~~~-----~~~vw~~~a~c~~~l~e---~e~A~e~y~kvl~~~p~~ 482 (895)
T KOG2076|consen 412 DDVDLYLDLADALTNIGK-YKEALRLLSPITNREGYQ-----NAFVWYKLARCYMELGE---YEEAIEFYEKVLILAPDN 482 (895)
T ss_pred hhHHHHHHHHHHHHhccc-HHHHHHHHHHHhcCcccc-----chhhhHHHHHHHHHHhh---HHHHHHHHHHHHhcCCCc
Confidence 344556667777778899 999999999988754332 25689999999999766 999999999999999999
Q ss_pred cchhhhHHHHHHHhccHHHHHHHHHHHcccC
Q 005502 441 FRAHLYMSEALEQLCKYKEALDFAIAAQCLD 471 (693)
Q Consensus 441 ~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~ 471 (693)
.-|..+++..+.++|++++|++.+....--+
T Consensus 483 ~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 483 LDARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred hhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 9999999999999999999999998766333
No 454
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=96.74 E-value=0.0041 Score=64.61 Aligned_cols=108 Identities=15% Similarity=0.032 Sum_probs=79.9
Q ss_pred HhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHH
Q 005502 371 RNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEA 450 (693)
Q Consensus 371 n~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~KA~~r~a~a 450 (693)
.-....++ |..+.....++....+. +-.+.+|.-+|.+|.+. |++.+|+++..+||+++|++..+....+..
T Consensus 118 ~~~~~~~~-~~~~~~~l~~~~~~~~~----~~~~~~~~~~a~~~~~~---G~~~~A~~~~~~al~~~P~~~~~~~~l~~~ 189 (280)
T PF13429_consen 118 QLYYRLGD-YDEAEELLEKLEELPAA----PDSARFWLALAEIYEQL---GDPDKALRDYRKALELDPDDPDARNALAWL 189 (280)
T ss_dssp H-HHHTT--HHHHHHHHHHHHH-T-------T-HHHHHHHHHHHHHC---CHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHhH-HHHHHHHHHHHHhccCC----CCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 33455677 98888888887753311 11256889999999995 569999999999999999999999999999
Q ss_pred HHHhccHHHHHHHHHHHcccCCCCchhHHHHHHHHH
Q 005502 451 LEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKK 486 (693)
Q Consensus 451 l~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l~~ 486 (693)
+..+|++++|.+.+....+..|.+......+..+..
T Consensus 190 li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~ 225 (280)
T PF13429_consen 190 LIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYL 225 (280)
T ss_dssp HCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHH
T ss_pred HHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhc
Confidence 999999999999998888887777665444444333
No 455
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=0.013 Score=57.84 Aligned_cols=106 Identities=15% Similarity=0.008 Sum_probs=84.7
Q ss_pred hHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHh-ccccCcHHHHHHhHhHhhccCCCCcch
Q 005502 365 MLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLK-RKWKNDAQMAIRDCYNARRIDSSSFRA 443 (693)
Q Consensus 365 ~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk-~~~~~d~~~A~~Dc~~Al~ldp~~~KA 443 (693)
..+-+|-.+-..|. |.+|++.|+..|+..|.+ .+.|- |-.+.+| ++. ...||+..+.=|+.=+++..|
T Consensus 88 V~~lkam~lEa~~~-~~~A~e~y~~lL~ddpt~------~v~~K-RKlAilka~GK---~l~aIk~ln~YL~~F~~D~EA 156 (289)
T KOG3060|consen 88 VGKLKAMLLEATGN-YKEAIEYYESLLEDDPTD------TVIRK-RKLAILKAQGK---NLEAIKELNEYLDKFMNDQEA 156 (289)
T ss_pred HHHHHHHHHHHhhc-hhhHHHHHHHHhccCcch------hHHHH-HHHHHHHHcCC---cHHHHHHHHHHHHHhcCcHHH
Confidence 33445555556678 999999999999988766 55665 4444444 443 678999999999999999999
Q ss_pred hhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHH
Q 005502 444 HLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKV 481 (693)
Q Consensus 444 ~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~ 481 (693)
+..+|..|+.+|.|+.|.=|++.++.+.|-+.-.-..+
T Consensus 157 W~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rl 194 (289)
T KOG3060|consen 157 WHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRL 194 (289)
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 99999999999999999999999999999986544333
No 456
>PRK14574 hmsH outer membrane protein; Provisional
Probab=96.67 E-value=0.015 Score=68.83 Aligned_cols=107 Identities=7% Similarity=-0.017 Sum_probs=95.5
Q ss_pred hhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCc
Q 005502 362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSF 441 (693)
Q Consensus 362 ~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~ 441 (693)
..+-....+.-..-.|+ +.+|.+.+.+.+...|.+ ..+..+.|-.+..|+| +..|..-..+|+.++|.+.
T Consensus 415 ~~~~~~l~a~~~~~~gd-l~~Ae~~le~l~~~aP~n------~~l~~~~A~v~~~Rg~---p~~A~~~~k~a~~l~P~~~ 484 (822)
T PRK14574 415 WIEGQTLLVQSLVALND-LPTAQKKLEDLSSTAPAN------QNLRIALASIYLARDL---PRKAEQELKAVESLAPRSL 484 (822)
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCC---HHHHHHHHHHHhhhCCccH
Confidence 33444445566667888 999999999999999988 7889999999999999 9999999999999999999
Q ss_pred chhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhH
Q 005502 442 RAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA 478 (693)
Q Consensus 442 KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~ 478 (693)
-+.+-++.+.+.|+++.+|....++++++.|+++.++
T Consensus 485 ~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 485 ILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 9999999999999999999999999999999998764
No 457
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.0081 Score=66.01 Aligned_cols=73 Identities=21% Similarity=0.345 Sum_probs=64.9
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceE-EEEEeeCCCCCEEEEEeCCCcEEEEEcCCC
Q 005502 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVF-CTKFVPETSDELVVSGAGDAEVRLFNLSRF 127 (693)
Q Consensus 51 ~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~-sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~ 127 (693)
-.|.-+.|+|.-.++|++..+|.|.+..+. .+.+.++ .-|..+++ +++|.|+ |++||.|-.||+|++.|+..+
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwti-p~p~~~v~~sL~W~~D--GkllaVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTI-PIPGENVTASLCWRPD--GKLLAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEec-cCCCCccceeeeecCC--CCEEEEEecCCeEEEEEccCC
Confidence 458889999999999999999999999987 7788888 44666677 9999999 799999999999999999975
No 458
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.64 E-value=0.013 Score=67.67 Aligned_cols=120 Identities=8% Similarity=-0.025 Sum_probs=102.0
Q ss_pred hhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCC-
Q 005502 362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS- 440 (693)
Q Consensus 362 ~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~- 440 (693)
.-..+...+|.+|-.++ |..++.++..||..... +.+.+.-|.+.|-+|..+ |||..|-.-..+|++.+|++
T Consensus 269 nP~~l~~LAn~fyfK~d-y~~v~~la~~ai~~t~~---~~~~aes~Y~~gRs~Ha~---Gd~ekA~~yY~~s~k~~~d~~ 341 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKD-YERVWHLAEHAIKNTEN---KSIKAESFYQLGRSYHAQ---GDFEKAFKYYMESLKADNDNF 341 (1018)
T ss_pred CcHHHHHHHHHHhhccc-HHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHccCCCCc
Confidence 34456667899999999 99999999999986633 345566688999999995 66999999999999999988
Q ss_pred cchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHHHHHHH
Q 005502 441 FRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHI 488 (693)
Q Consensus 441 ~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l~~~i 488 (693)
+=++++.+|.++..|++++|..+|.++++..|++.+..+.+-.|....
T Consensus 342 ~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~ 389 (1018)
T KOG2002|consen 342 VLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHS 389 (1018)
T ss_pred cccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhh
Confidence 999999999999999999999999999999999977666665555544
No 459
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.61 E-value=0.0026 Score=45.72 Aligned_cols=38 Identities=26% Similarity=0.246 Sum_probs=33.3
Q ss_pred chhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHH
Q 005502 442 RAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAE 479 (693)
Q Consensus 442 KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~ 479 (693)
.+++.+|+++..+|++++|.+.|+++++++|++..+..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~ 39 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWR 39 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 47888999999999999999999999999999877543
No 460
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.61 E-value=0.018 Score=51.36 Aligned_cols=95 Identities=22% Similarity=0.129 Sum_probs=76.5
Q ss_pred HHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCC---Ccch
Q 005502 367 VEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSS---SFRA 443 (693)
Q Consensus 367 k~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~---~~KA 443 (693)
.+.+.-.-..|+ ..+||..|.++|..... .+.+...+.+.|.+|..++ .+.+|+.-..++++-.|+ +...
T Consensus 5 ~~~A~a~d~~G~-~~~Ai~~Y~~Al~~gL~---~~~~~~a~i~lastlr~LG---~~deA~~~L~~~~~~~p~~~~~~~l 77 (120)
T PF12688_consen 5 YELAWAHDSLGR-EEEAIPLYRRALAAGLS---GADRRRALIQLASTLRNLG---RYDEALALLEEALEEFPDDELNAAL 77 (120)
T ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHcCCC---chHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHCCCccccHHH
Confidence 345555667899 99999999999996533 2445567888999998864 499999999999988787 6666
Q ss_pred hhhHHHHHHHhccHHHHHHHHHHHc
Q 005502 444 HLYMSEALEQLCKYKEALDFAIAAQ 468 (693)
Q Consensus 444 ~~r~a~al~~l~~~~eA~~~~~~~~ 468 (693)
..-.|.+|..+|+++||++.+-.++
T Consensus 78 ~~f~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 78 RVFLALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6778999999999999999887665
No 461
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.01 Score=62.50 Aligned_cols=87 Identities=22% Similarity=0.218 Sum_probs=67.9
Q ss_pred hhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHHH
Q 005502 372 NSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEAL 451 (693)
Q Consensus 372 ~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~KA~~r~a~al 451 (693)
-+++-+. |..||+.++++|...|.+ ...+..|+.||+.+ |+|..|..|..+|++++|+|--|.--++.+.
T Consensus 266 c~lKl~~-~~~Ai~~c~kvLe~~~~N------~KALyRrG~A~l~~---~e~~~A~~df~ka~k~~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 266 CYLKLKE-YKEAIESCNKVLELDPNN------VKALYRRGQALLAL---GEYDLARDDFQKALKLEPSNKAARAELIKLK 335 (397)
T ss_pred HHHhhhh-HHHHHHHHHHHHhcCCCc------hhHHHHHHHHHHhh---ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 4556667 999999999999998887 55567899999995 6699999999999999999965666666666
Q ss_pred HHhccHHHH-HHHHHHHc
Q 005502 452 EQLCKYKEA-LDFAIAAQ 468 (693)
Q Consensus 452 ~~l~~~~eA-~~~~~~~~ 468 (693)
....++.+. .+.|...+
T Consensus 336 ~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 666666654 44554444
No 462
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.55 E-value=0.087 Score=57.28 Aligned_cols=220 Identities=14% Similarity=0.138 Sum_probs=112.0
Q ss_pred hhhhccccceEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEec-------cCCCcceEEEEEee---
Q 005502 34 SSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-------TGHSANVFCTKFVP--- 103 (693)
Q Consensus 34 ~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~-------~~h~~~I~sl~f~p--- 103 (693)
..+.+.+.+...++...++|++++.+. =-++|.|..+|.+.|.|+.....+..-. ......|+++.|..
T Consensus 70 ~~~~~gf~P~~l~~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~ 148 (395)
T PF08596_consen 70 PSLKEGFLPLTLLDAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTL 148 (395)
T ss_dssp TT-SEEEEEEEEE---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-
T ss_pred cccccccCchhheeccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEec
Confidence 345566888888888899999999984 4489999999999999997766655421 12345688898873
Q ss_pred CCCC---CEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEe-cCC--------------------
Q 005502 104 ETSD---ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE-VGN-------------------- 159 (693)
Q Consensus 104 ~~~~---~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-p~~-------------------- 159 (693)
..++ -.++.|...|.+.+|.+--...... ..........+.+.|..|..- .+.
T Consensus 149 ~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f---~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i 225 (395)
T PF08596_consen 149 GGDGYSSICLLVGTNSGNVLTFKILPSSNGRF---SVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISI 225 (395)
T ss_dssp TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-E---EEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT---
T ss_pred CCCcccceEEEEEeCCCCEEEEEEecCCCCce---EEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCc
Confidence 2112 3688889999999998862111110 001122222355666665532 110
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEc----CCCCcEEEEEe
Q 005502 160 PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS----STRPHLLLVGG 235 (693)
Q Consensus 160 ~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~s----p~~~~~Latgs 235 (693)
+.+++. ..+..+|++..-+.+.. +..+ ........+.+- -..+..|++-.
T Consensus 226 ~g~vVv-vSe~~irv~~~~~~k~~-----------~K~~--------------~~~~~~~~~~vv~~~~~~~~~~Lv~l~ 279 (395)
T PF08596_consen 226 PGYVVV-VSESDIRVFKPPKSKGA-----------HKSF--------------DDPFLCSSASVVPTISRNGGYCLVCLF 279 (395)
T ss_dssp -EEEEE-E-SSEEEEE-TT---EE-----------EEE---------------SS-EEEEEEEEEEEE-EEEEEEEEEEE
T ss_pred CcEEEE-EcccceEEEeCCCCccc-----------ceee--------------ccccccceEEEEeecccCCceEEEEEE
Confidence 123333 33467778776554311 1111 111222233332 11356788889
Q ss_pred CCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecC
Q 005502 236 SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG 300 (693)
Q Consensus 236 ~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~D 300 (693)
.+|.|++|.+..++.+.....+.. . +. ..+...+|+++|..++..+..
T Consensus 280 ~~G~i~i~SLP~Lkei~~~~l~~~----------~------d~-~~~~~ssis~~Gdi~~~~gps 327 (395)
T PF08596_consen 280 NNGSIRIYSLPSLKEIKSVSLPPP----------L------DS-RRLSSSSISRNGDIFYWTGPS 327 (395)
T ss_dssp TTSEEEEEETTT--EEEEEE-SS-------------------H-HHHTT-EE-TTS-EEEE-SSS
T ss_pred CCCcEEEEECCCchHhhcccCCCc----------c------cc-ccccccEECCCCCEEEEeCcc
Confidence 999999999998876654422100 0 00 023456779999977666543
No 463
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.50 E-value=0.018 Score=61.83 Aligned_cols=99 Identities=16% Similarity=-0.013 Sum_probs=82.3
Q ss_pred hHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCc---
Q 005502 365 MLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSF--- 441 (693)
Q Consensus 365 ~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~--- 441 (693)
.+...|.-....|+ |.+|+..|.++++..|.. ...+...|.+|... |++.+|+.-+.+++++.|...
T Consensus 116 ~~~~~a~~~~~~G~-~~~A~~~~~~al~~~p~~------~~~~~~la~i~~~~---g~~~eA~~~l~~~l~~~~~~~~~~ 185 (355)
T cd05804 116 LLGMLAFGLEEAGQ-YDRAEEAARRALELNPDD------AWAVHAVAHVLEMQ---GRFKEGIAFMESWRDTWDCSSMLR 185 (355)
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCC------cHHHHHHHHHHHHc---CCHHHHHHHHHhhhhccCCCcchh
Confidence 33455667788999 999999999999998876 56778889999885 559999999999999987533
Q ss_pred -chhhhHHHHHHHhccHHHHHHHHHHHcccCCC
Q 005502 442 -RAHLYMSEALEQLCKYKEALDFAIAAQCLDPS 473 (693)
Q Consensus 442 -KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~ 473 (693)
..++.+|.++..+|++++|...+++++...|.
T Consensus 186 ~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~ 218 (355)
T cd05804 186 GHNWWHLALFYLERGDYEAALAIYDTHIAPSAE 218 (355)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhccccC
Confidence 24567999999999999999999999776663
No 464
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.48 E-value=0.0063 Score=40.41 Aligned_cols=38 Identities=26% Similarity=0.640 Sum_probs=32.2
Q ss_pred cEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 005502 83 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 123 (693)
Q Consensus 83 ~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwd 123 (693)
+++..+ ..|...|.++.|.|. +.++++++.|+.|++|+
T Consensus 3 ~~~~~~-~~~~~~i~~~~~~~~--~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTL-KGHTGPVTSVAFSPD--GKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEE-EecCCceeEEEECCC--CCEEEEecCCCeEEEcC
Confidence 445556 578889999999998 58999999999999996
No 465
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.47 E-value=0.016 Score=57.55 Aligned_cols=59 Identities=24% Similarity=0.278 Sum_probs=55.8
Q ss_pred cCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhH
Q 005502 420 KNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA 478 (693)
Q Consensus 420 ~~d~~~A~~Dc~~Al~ldp~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~ 478 (693)
.|++..|+.-..+|.+++|++.++|--+|-||.++|++++|...|.+++++.|.++.+.
T Consensus 113 ~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~ 171 (257)
T COG5010 113 NGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIA 171 (257)
T ss_pred hcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhh
Confidence 57799999999999999999999999999999999999999999999999999987654
No 466
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.45 E-value=0.023 Score=59.17 Aligned_cols=123 Identities=20% Similarity=0.095 Sum_probs=88.7
Q ss_pred hhhHHHHHHhhhhc-CCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhcc--CCC
Q 005502 363 CRMLVEIARNSLEE-GKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRI--DSS 439 (693)
Q Consensus 363 a~~lk~~gn~~~~~-g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~l--dp~ 439 (693)
+..+...|.-+... ++ +..|++.|.+|++.......+.....++.+-|..+.+++ +|..|+.-..++... +.+
T Consensus 114 A~~~~~lA~~ye~~~~d-~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~---~y~~A~~~~e~~~~~~l~~~ 189 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGD-YEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLG---RYEEAIEIYEEVAKKCLENN 189 (282)
T ss_dssp HHHHHHHHHHHCCTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHTCCCHC
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHhhccc
Confidence 44555566666566 67 999999999999987765444444568889999999964 599999999988753 211
Q ss_pred ----Ccc-hhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHHHHHHHHH
Q 005502 440 ----SFR-AHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAA 490 (693)
Q Consensus 440 ----~~K-A~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l~~~i~~ 490 (693)
.+| .+++.+.|++.+|++..|.+.+++....+|...... +.+-+..-|..
T Consensus 190 l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~-E~~~~~~l~~A 244 (282)
T PF14938_consen 190 LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSR-EYKFLEDLLEA 244 (282)
T ss_dssp TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSH-HHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH-HHHHHHHHHHH
Confidence 244 457888999999999999999999999999887643 44444444433
No 467
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.029 Score=58.96 Aligned_cols=108 Identities=11% Similarity=-0.086 Sum_probs=76.2
Q ss_pred cchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccc--------------------
Q 005502 360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKW-------------------- 419 (693)
Q Consensus 360 ~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~-------------------- 419 (693)
+.....+.-+|+-..+.++ .++|+-.+..|+.+.|.. ..+|-..--|||-.+.
T Consensus 331 ~r~~~alilKG~lL~~~~R-~~~A~IaFR~Aq~Lap~r------L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~ 403 (564)
T KOG1174|consen 331 PRNHEALILKGRLLIALER-HTQAVIAFRTAQMLAPYR------LEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSAR 403 (564)
T ss_pred cccchHHHhccHHHHhccc-hHHHHHHHHHHHhcchhh------HHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchh
Confidence 3445667778888888888 889999999998887654 2233322223322111
Q ss_pred ----cC---------cHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCC
Q 005502 420 ----KN---------DAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSN 474 (693)
Q Consensus 420 ----~~---------d~~~A~~Dc~~Al~ldp~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~ 474 (693)
.| --++|-.-..++|+++|.+.+|..-.|+-+..-|++++++..+++.+..+|+.
T Consensus 404 ~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~ 471 (564)
T KOG1174|consen 404 SLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV 471 (564)
T ss_pred hhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc
Confidence 11 12346667778899999999999999988888888888888888888887775
No 468
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.43 E-value=0.01 Score=54.97 Aligned_cols=59 Identities=15% Similarity=-0.004 Sum_probs=55.3
Q ss_pred cCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhH
Q 005502 420 KNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA 478 (693)
Q Consensus 420 ~~d~~~A~~Dc~~Al~ldp~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~ 478 (693)
.|++.+|.+-......+||.+...+|.+|.|+..+|+|++|+++|..+..++|+++...
T Consensus 48 ~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~ 106 (157)
T PRK15363 48 VKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP 106 (157)
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 36799999999999999999999999999999999999999999999999999987643
No 469
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.34 E-value=0.68 Score=55.14 Aligned_cols=210 Identities=9% Similarity=0.069 Sum_probs=116.6
Q ss_pred CcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcE
Q 005502 93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTL 172 (693)
Q Consensus 93 ~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V 172 (693)
.+.|.++.|..+ +.-++.+...|.|.+.|..+. .......-...|.+++|+| +..+++-.+..++|
T Consensus 68 d~~i~s~~fl~d--~~~i~v~~~~G~iilvd~et~-----------~~eivg~vd~GI~aaswS~-Dee~l~liT~~~tl 133 (1265)
T KOG1920|consen 68 DDEIVSVQFLAD--TNSICVITALGDIILVDPETL-----------ELEIVGNVDNGISAASWSP-DEELLALITGRQTL 133 (1265)
T ss_pred CcceEEEEEecc--cceEEEEecCCcEEEEccccc-----------ceeeeeeccCceEEEeecC-CCcEEEEEeCCcEE
Confidence 368999999988 467777788899999988753 2333333467899999999 66788777777776
Q ss_pred EEEeC----CCCCCCCCCCCCCcccceEEEeccCCcee-----eec-CC-------C--CCccceEEEEEcCCCCcEEEE
Q 005502 173 RQHDF----RQGSSCPPAGSSHQECRNILLDLRCGAKR-----SLA-DP-------P--KQTLSLKSCDISSTRPHLLLV 233 (693)
Q Consensus 173 ~iwDl----r~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~l~-~~-------~--~~~~~v~sl~~sp~~~~~Lat 233 (693)
.+-+- -..++...-.........+-|.-.+.... ... .. + .....=++|+|-.+ |.++|+
T Consensus 134 l~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgD-g~~fAV 212 (1265)
T KOG1920|consen 134 LFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGD-GEYFAV 212 (1265)
T ss_pred EEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccC-CcEEEE
Confidence 54321 11111100000001111222221110000 000 00 0 01112246888886 788888
Q ss_pred Ee----CC-CcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEec---CCcEEE
Q 005502 234 GG----SD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS---GEHVYL 305 (693)
Q Consensus 234 gs----~D-g~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~---Dg~V~l 305 (693)
.. .+ ..|++||.. +..-. . ..| ...-=.+++|-|.|..+++-.. |+.|.+
T Consensus 213 s~~~~~~~~RkirV~drE-g~Lns-~---se~-----------------~~~l~~~LsWkPsgs~iA~iq~~~sd~~Ivf 270 (1265)
T KOG1920|consen 213 SFVESETGTRKIRVYDRE-GALNS-T---SEP-----------------VEGLQHSLSWKPSGSLIAAIQCKTSDSDIVF 270 (1265)
T ss_pred EEEeccCCceeEEEeccc-chhhc-c---cCc-----------------ccccccceeecCCCCeEeeeeecCCCCcEEE
Confidence 32 23 799999987 32110 0 000 0001346999999998887654 667999
Q ss_pred EECCCCCcceEEe--ecCC-CceeEEeccCCCccccc
Q 005502 306 MDVNHAGGRAMRY--TVGD-ASKIMSFTPTLNGLELQ 339 (693)
Q Consensus 306 wDl~~~~~~~~~~--~~~~-~~~~~~~~p~~~g~~~~ 339 (693)
|.-+......... ..+. ....++|+.+..-++..
T Consensus 271 fErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~ 307 (1265)
T KOG1920|consen 271 FERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVV 307 (1265)
T ss_pred EecCCccccccccCCcccccchheeeecCCCCceeee
Confidence 9877643322211 1112 25677888777666553
No 470
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.30 E-value=0.031 Score=65.96 Aligned_cols=114 Identities=19% Similarity=0.157 Sum_probs=80.5
Q ss_pred CcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHH--------------
Q 005502 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQ-------------- 424 (693)
Q Consensus 359 ~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~-------------- 424 (693)
.+.....+....+.+...++ |.+|+..+.++++..|.. ..+|.-.+..|++.+..+|+.
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~-~deai~i~~~~l~~~P~~------i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~ 99 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENL-TDEAKDICEEHLKEHKKS------ISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKW 99 (906)
T ss_pred CcchHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCcc------eehHHHHHHHHHhhcchhhhhhhhhhhhcccccch
Confidence 44455666666666667788 999999999999998876 455655666666655433221
Q ss_pred HHHHhHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHH
Q 005502 425 MAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAE 479 (693)
Q Consensus 425 ~A~~Dc~~Al~ldp~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~ 479 (693)
.++.+....+...|.+-.|+|.+|.||..+|++++|...++++++++|+|..+..
T Consensus 100 ~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLN 154 (906)
T PRK14720 100 AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVK 154 (906)
T ss_pred hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHH
Confidence 1222222222223333489999999999999999999999999999999976543
No 471
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.26 E-value=0.37 Score=51.07 Aligned_cols=156 Identities=13% Similarity=0.168 Sum_probs=93.2
Q ss_pred cEEEEEECCC----CCEEEEEeC----------CCcEEEEECCCC-----cEEEEeccCCCcceEEEEEeeCCCCCEEEE
Q 005502 52 CVNAISWNSK----GSLLISGSD----------DTHINVWSYSSR-----KLLHSIETGHSANVFCTKFVPETSDELVVS 112 (693)
Q Consensus 52 ~V~~l~~s~~----g~~LaSgs~----------Dg~I~IWd~~~~-----~~~~~l~~~h~~~I~sl~f~p~~~~~~l~s 112 (693)
++..+.+..+ -.+|+.|.. .|.|.++++... +..........++|++++-.. +. |+.
T Consensus 28 s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~---~~-lv~ 103 (321)
T PF03178_consen 28 SLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFN---GR-LVV 103 (321)
T ss_dssp EEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEET---TE-EEE
T ss_pred EEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhC---CE-EEE
Confidence 3444555443 467887753 289999999884 222222235678899998772 34 444
Q ss_pred EeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcc
Q 005502 113 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE 192 (693)
Q Consensus 113 gs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~ 192 (693)
+. .+.|.+|++.... ...+...+. ....|.++... +++|+.|.....|.++..+.....
T Consensus 104 ~~-g~~l~v~~l~~~~-------~l~~~~~~~-~~~~i~sl~~~---~~~I~vgD~~~sv~~~~~~~~~~~--------- 162 (321)
T PF03178_consen 104 AV-GNKLYVYDLDNSK-------TLLKKAFYD-SPFYITSLSVF---KNYILVGDAMKSVSLLRYDEENNK--------- 162 (321)
T ss_dssp EE-TTEEEEEEEETTS-------SEEEEEEE--BSSSEEEEEEE---TTEEEEEESSSSEEEEEEETTTE----------
T ss_pred ee-cCEEEEEEccCcc-------cchhhheec-ceEEEEEEecc---ccEEEEEEcccCEEEEEEEccCCE---------
Confidence 43 4899999998642 012222232 23367777765 358888888888887755432100
Q ss_pred cceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecC
Q 005502 193 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR 246 (693)
Q Consensus 193 ~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r 246 (693)
-.++ .. ......++++.|-++. ..++++..+|.|.++...
T Consensus 163 --l~~v----------a~-d~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 163 --LILV----------AR-DYQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp --EEEE----------EE-ESS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-
T ss_pred --EEEE----------Ee-cCCCccEEEEEEecCC-cEEEEEcCCCeEEEEEEC
Confidence 0111 00 0124568888888764 599999999999999886
No 472
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.21 E-value=0.14 Score=57.65 Aligned_cols=87 Identities=9% Similarity=-0.005 Sum_probs=55.5
Q ss_pred CCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcC
Q 005502 146 HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS 225 (693)
Q Consensus 146 h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp 225 (693)
-......+.++|++..+++++..+.+|.++|+.+........ .+....+. ..... ...-...+|.+
T Consensus 319 VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~---~~~~~~vv----------aevev-GlGPLHTaFDg 384 (635)
T PRK02888 319 VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK---IKPRDAVV----------AEPEL-GLGPLHTAFDG 384 (635)
T ss_pred CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc---CCccceEE----------Eeecc-CCCcceEEECC
Confidence 346678899999777777777789999999998765321000 00111111 01111 11223567888
Q ss_pred CCCcEEEEEeCCCcEEEEecCC
Q 005502 226 TRPHLLLVGGSDAFARLYDRRM 247 (693)
Q Consensus 226 ~~~~~Latgs~Dg~I~lwD~r~ 247 (693)
+ ++.+.+-.-|..|..|++..
T Consensus 385 ~-G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 385 R-GNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred C-CCEEEeEeecceeEEEehHH
Confidence 6 67888888999999999875
No 473
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.16 E-value=1.3 Score=44.09 Aligned_cols=225 Identities=10% Similarity=0.042 Sum_probs=0.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCce
Q 005502 62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA 141 (693)
Q Consensus 62 g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~ 141 (693)
|.+++.|...|.+.+.+..+|.....+ ..-..-=......++ +.++..|+.|++.+..|.++. .++.
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f-~~~~~vk~~a~~d~~--~glIycgshd~~~yalD~~~~----------~cVy 129 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNF-VILETVKVRAQCDFD--GGLIYCGSHDGNFYALDPKTY----------GCVY 129 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeee-eehhhhccceEEcCC--CceEEEecCCCcEEEeccccc----------ceEE
Q ss_pred eeccCCCCeEEEEEecCCCcEEEEEeCCCcE-------------------------------------------------
Q 005502 142 LYQCHTRRVKKLAVEVGNPHVVWSASEDGTL------------------------------------------------- 172 (693)
Q Consensus 142 ~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V------------------------------------------------- 172 (693)
..++-.....+-+..| ++.-|..+...|.|
T Consensus 130 kskcgG~~f~sP~i~~-g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~~sG 208 (354)
T KOG4649|consen 130 KSKCGGGTFVSPVIAP-GDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFDESG 208 (354)
T ss_pred ecccCCceeccceecC-CCceEEEEeccceEEEEccCCCCcceehhhhcCCccccCceeccceEEEEEeccEEEEEcCCC
Q ss_pred -EEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCcc------ceEEEEEcC-----------CCCcEEEEE
Q 005502 173 -RQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL------SLKSCDISS-----------TRPHLLLVG 234 (693)
Q Consensus 173 -~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~------~v~sl~~sp-----------~~~~~Latg 234 (693)
.+|..+++.+.-.........-..+.--+.+.........+|-. ....+-.+| ..+.+|..+
T Consensus 209 ~qvwr~~t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~p~l~F~~h~~~~S~~~ll~~~ 288 (354)
T KOG4649|consen 209 RQVWRPATKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLSPKLRFDLHSPGISYPKLLRRS 288 (354)
T ss_pred cEEEeecCCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeCcccceeccCCCCcchhhhhhh
Q ss_pred eCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCC
Q 005502 235 GSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 235 s~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~~~ 312 (693)
+.||.+.|.-.+ .++.........++......+...-.....|.. ..|+.|+.|..|+.||+.+..
T Consensus 289 s~dgkv~il~~~-----~sl~~~~s~~g~lq~~~~~el~~eIFsSPvii~-------grl~igcRDdYv~cldl~~~~ 354 (354)
T KOG4649|consen 289 SGDGKVMILMTS-----KSLAEISSNGGELQNLEAIELSNEIFSSPVIID-------GRLLIGCRDDYVRCLDLDTWH 354 (354)
T ss_pred cCCCcEEEEEec-----ccccccccCCCccceEEEeecCcccccCCeEEc-------cEEEEEEccCeEEEEeccccC
No 474
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.15 E-value=0.099 Score=52.23 Aligned_cols=125 Identities=11% Similarity=-0.012 Sum_probs=93.9
Q ss_pred chhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCC
Q 005502 361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS 440 (693)
Q Consensus 361 ~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~ 440 (693)
..+..|-++|...++.|+ |.+|+..|......+|.. +.........+-+++| .+++..|+...++=+++.|++
T Consensus 32 ~p~~~LY~~g~~~L~~gn-~~~A~~~fe~l~~~~p~s---~~~~qa~l~l~yA~Yk---~~~y~~A~~~~drFi~lyP~~ 104 (254)
T COG4105 32 LPASELYNEGLTELQKGN-YEEAIKYFEALDSRHPFS---PYSEQAQLDLAYAYYK---NGEYDLALAYIDRFIRLYPTH 104 (254)
T ss_pred CCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCC---cccHHHHHHHHHHHHh---cccHHHHHHHHHHHHHhCCCC
Confidence 347889999999999999 999999999988888765 2223344556888899 567999999999999999998
Q ss_pred cc---hhhhHHHHHHHh--------ccHHHHHHHHHHHcccCCCCc---hhHHHHHHHHHHHHHHH
Q 005502 441 FR---AHLYMSEALEQL--------CKYKEALDFAIAAQCLDPSNS---VMAEKVENIKKHIAAAE 492 (693)
Q Consensus 441 ~K---A~~r~a~al~~l--------~~~~eA~~~~~~~~~~~p~~~---~~~~~~~~l~~~i~~~~ 492 (693)
.. |+|-++.+++.. .--.+|...++.++...|+-. .+...+..++..+...+
T Consensus 105 ~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~E 170 (254)
T COG4105 105 PNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHE 170 (254)
T ss_pred CChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 76 556666665432 234678889999999999863 34455555555555544
No 475
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.08 E-value=0.55 Score=51.32 Aligned_cols=201 Identities=11% Similarity=0.051 Sum_probs=107.4
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEE------EEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCC
Q 005502 61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFC------TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD 134 (693)
Q Consensus 61 ~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~s------l~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 134 (693)
.+..+++++.++.|.-+|..+++.+-.........+.. +.-.|.-.+..++.++.++.+..+|..++
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG------- 140 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDG------- 140 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCC-------
Confidence 35677888888999999999998876653222111110 00011111356777888999999999865
Q ss_pred CCCCCceeeccCCCCeEE-EEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCC
Q 005502 135 NAITPSALYQCHTRRVKK-LAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPK 213 (693)
Q Consensus 135 ~~~~~~~~~~~h~~~V~~-l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 213 (693)
+.+....... .+.+ ..+. + ..++.+..+|.|..+|..+++ .+|........ + ....
T Consensus 141 ---~~~W~~~~~~-~~~ssP~v~--~-~~v~v~~~~g~l~ald~~tG~--------------~~W~~~~~~~~-~-~~~~ 197 (394)
T PRK11138 141 ---EVAWQTKVAG-EALSRPVVS--D-GLVLVHTSNGMLQALNESDGA--------------VKWTVNLDVPS-L-TLRG 197 (394)
T ss_pred ---CCcccccCCC-ceecCCEEE--C-CEEEEECCCCEEEEEEccCCC--------------EeeeecCCCCc-c-cccC
Confidence 2233333221 1211 1121 3 355567788999999998876 33433321100 0 0000
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcC--CC
Q 005502 214 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP--NG 291 (693)
Q Consensus 214 ~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fsp--dg 291 (693)
...++ +. ...+++++.+|.+..+|..+++.+........... ..+ .....+.-+| .+
T Consensus 198 ~~sP~----v~---~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~--~~~------------~~~~~~~~sP~v~~ 256 (394)
T PRK11138 198 ESAPA----TA---FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGA--TEI------------DRLVDVDTTPVVVG 256 (394)
T ss_pred CCCCE----EE---CCEEEEEcCCCEEEEEEccCChhhheeccccCCCc--cch------------hcccccCCCcEEEC
Confidence 01111 11 13567778899999999988775433211100000 000 0000111112 24
Q ss_pred CEEEEEecCCcEEEEECCCCC
Q 005502 292 EEVLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 292 ~~L~sgs~Dg~V~lwDl~~~~ 312 (693)
..|++++.+|.++.+|+.+++
T Consensus 257 ~~vy~~~~~g~l~ald~~tG~ 277 (394)
T PRK11138 257 GVVYALAYNGNLVALDLRSGQ 277 (394)
T ss_pred CEEEEEEcCCeEEEEECCCCC
Confidence 567777789999999999864
No 476
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.07 E-value=0.017 Score=59.09 Aligned_cols=76 Identities=14% Similarity=0.033 Sum_probs=63.6
Q ss_pred hhhhHHHHH-HhccccCcHHHHHHhHhHhhccCCCCc---chhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHH
Q 005502 406 CLCIRAALL-LKRKWKNDAQMAIRDCYNARRIDSSSF---RAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKV 481 (693)
Q Consensus 406 ~~~NRA~~~-lk~~~~~d~~~A~~Dc~~Al~ldp~~~---KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~ 481 (693)
-+.+.|..+ ++. ++|..|+..+.+.++..|++. .|+|.+|++++.+|++++|+..|+++++.+|+.......+
T Consensus 144 ~~Y~~A~~l~~~~---~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 144 TDYNAAIALVQDK---SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHhc---CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 455667766 443 669999999999999999985 7999999999999999999999999999999987665555
Q ss_pred HHH
Q 005502 482 ENI 484 (693)
Q Consensus 482 ~~l 484 (693)
.++
T Consensus 221 ~kl 223 (263)
T PRK10803 221 FKV 223 (263)
T ss_pred HHH
Confidence 433
No 477
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.06 E-value=0.0052 Score=41.20 Aligned_cols=32 Identities=34% Similarity=0.471 Sum_probs=29.5
Q ss_pred chhhhHHHHHHHhccHHHHHHHHHHHcccCCC
Q 005502 442 RAHLYMSEALEQLCKYKEALDFAIAAQCLDPS 473 (693)
Q Consensus 442 KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~ 473 (693)
++|+.+|+++..+|++++|+++++++++++|.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 57899999999999999999999999999884
No 478
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.03 E-value=0.29 Score=53.52 Aligned_cols=181 Identities=14% Similarity=0.128 Sum_probs=99.2
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEeccCCCc------ceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCC
Q 005502 64 LLISGSDDTHINVWSYSSRKLLHSIETGHSA------NVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAI 137 (693)
Q Consensus 64 ~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~------~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~ 137 (693)
.++.++.++.+..+|..+++.+......... ....+.-.|--.+..++.++.++.+..+|+.++.
T Consensus 207 ~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~--------- 277 (394)
T PRK11138 207 GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ--------- 277 (394)
T ss_pred EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC---------
Confidence 5666778888988998888765543211110 0111111221113567777789999999998642
Q ss_pred CCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccc
Q 005502 138 TPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLS 217 (693)
Q Consensus 138 ~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ 217 (693)
.+.... ......+.. .+..+..++.+|.|..+|..+++ .+|...... ...
T Consensus 278 -~~W~~~--~~~~~~~~~---~~~~vy~~~~~g~l~ald~~tG~--------------~~W~~~~~~----------~~~ 327 (394)
T PRK11138 278 -IVWKRE--YGSVNDFAV---DGGRIYLVDQNDRVYALDTRGGV--------------ELWSQSDLL----------HRL 327 (394)
T ss_pred -EEEeec--CCCccCcEE---ECCEEEEEcCCCeEEEEECCCCc--------------EEEcccccC----------CCc
Confidence 122211 111122222 23455577889999999988764 233211100 001
Q ss_pred eEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEE
Q 005502 218 LKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS 297 (693)
Q Consensus 218 v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sg 297 (693)
..+..+. +..|++++.||.|.++|..+++.+...... ... ......+ .+..|+++
T Consensus 328 ~~sp~v~---~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~-------------------~~~-~~s~P~~--~~~~l~v~ 382 (394)
T PRK11138 328 LTAPVLY---NGYLVVGDSEGYLHWINREDGRFVAQQKVD-------------------SSG-FLSEPVV--ADDKLLIQ 382 (394)
T ss_pred ccCCEEE---CCEEEEEeCCCEEEEEECCCCCEEEEEEcC-------------------CCc-ceeCCEE--ECCEEEEE
Confidence 1111222 347888999999999999887644322110 000 0111112 24578899
Q ss_pred ecCCcEEEEEC
Q 005502 298 YSGEHVYLMDV 308 (693)
Q Consensus 298 s~Dg~V~lwDl 308 (693)
+.||.|+.+++
T Consensus 383 t~~G~l~~~~~ 393 (394)
T PRK11138 383 ARDGTVYAITR 393 (394)
T ss_pred eCCceEEEEeC
Confidence 99999998875
No 479
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.02 E-value=0.31 Score=56.92 Aligned_cols=133 Identities=15% Similarity=0.122 Sum_probs=86.9
Q ss_pred ccchhhhccccceEEeccCCCc-EEEEEECC-----CCCEEEEEeCCCcEEEEECCCC--cEEEE-e-ccCCCcceEEEE
Q 005502 31 QMHSSLVRRLSQERELEGHQGC-VNAISWNS-----KGSLLISGSDDTHINVWSYSSR--KLLHS-I-ETGHSANVFCTK 100 (693)
Q Consensus 31 ~~~~~~i~~l~~~~~l~gH~~~-V~~l~~s~-----~g~~LaSgs~Dg~I~IWd~~~~--~~~~~-l-~~~h~~~I~sl~ 100 (693)
.++..-+.+++.+.+.+-|... |..++=.. .....+.|-.+..+..||+.-. +++.. . .........|++
T Consensus 505 ~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~a 584 (794)
T PF08553_consen 505 KLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFA 584 (794)
T ss_pred ceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEE
Confidence 3555667888888888887654 76664432 1334567778889999998742 23321 1 112334556665
Q ss_pred EeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 005502 101 FVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR 178 (693)
Q Consensus 101 f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr 178 (693)
-..+ .+||.|+.+|.||+||-- + . .....+.+-..+|..|.++. ++.+|+ |..+..|.++++.
T Consensus 585 Tt~~---G~iavgs~~G~IRLyd~~-g--~-------~AKT~lp~lG~pI~~iDvt~-DGkwil-aTc~tyLlLi~t~ 647 (794)
T PF08553_consen 585 TTED---GYIAVGSNKGDIRLYDRL-G--K-------RAKTALPGLGDPIIGIDVTA-DGKWIL-ATCKTYLLLIDTL 647 (794)
T ss_pred ecCC---ceEEEEeCCCcEEeeccc-c--h-------hhhhcCCCCCCCeeEEEecC-CCcEEE-EeecceEEEEEEe
Confidence 5544 589999999999999832 1 1 22334456678999999999 555553 3345788888864
No 480
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=96.01 E-value=0.019 Score=63.74 Aligned_cols=108 Identities=20% Similarity=0.063 Sum_probs=84.5
Q ss_pred CcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCC--cchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhcc
Q 005502 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGP--MLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRI 436 (693)
Q Consensus 359 ~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~--~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~l 436 (693)
.+..+..++..|.-+...++ |.+|+..|.+|+.......++ +..++.+.|.|.+|.+++. +.+|..-|.+|++|
T Consensus 237 hl~va~~l~~~a~~y~~~~k-~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GK---f~EA~~~~e~Al~I 312 (508)
T KOG1840|consen 237 HLVVASMLNILALVYRSLGK-YDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGK---FAEAEEYCERALEI 312 (508)
T ss_pred CHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCC---hHHHHHHHHHHHHH
Confidence 33445556667888888999 999999999999876543332 2335689999999999755 99999999999976
Q ss_pred C--------CCCcchhhhHHHHHHHhccHHHHHHHHHHHccc
Q 005502 437 D--------SSSFRAHLYMSEALEQLCKYKEALDFAIAAQCL 470 (693)
Q Consensus 437 d--------p~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~ 470 (693)
- |.=.+.+...+..+..++++++|...++.++++
T Consensus 313 ~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 313 YEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred HHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 2 222456677788899999999999999988865
No 481
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=95.97 E-value=0.13 Score=47.63 Aligned_cols=97 Identities=21% Similarity=0.097 Sum_probs=73.9
Q ss_pred hhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCC--
Q 005502 363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS-- 440 (693)
Q Consensus 363 a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~-- 440 (693)
+..........+..++ +..+...+.+.+...|.. ..........|.+++. .||+.+|+.....++.-.|+.
T Consensus 11 a~~~y~~~~~~~~~~~-~~~~~~~~~~l~~~~~~s---~ya~~A~l~lA~~~~~---~g~~~~A~~~l~~~~~~~~d~~l 83 (145)
T PF09976_consen 11 ASALYEQALQALQAGD-PAKAEAAAEQLAKDYPSS---PYAALAALQLAKAAYE---QGDYDEAKAALEKALANAPDPEL 83 (145)
T ss_pred HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCCCC---hHHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHhhCCCHHH
Confidence 4445555666667777 888777788888877654 2222344566777777 477999999999999877654
Q ss_pred -cchhhhHHHHHHHhccHHHHHHHHHH
Q 005502 441 -FRAHLYMSEALEQLCKYKEALDFAIA 466 (693)
Q Consensus 441 -~KA~~r~a~al~~l~~~~eA~~~~~~ 466 (693)
..|.+|+|++++.+|++++|+..++.
T Consensus 84 ~~~a~l~LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 84 KPLARLRLARILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 46999999999999999999999976
No 482
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.96 E-value=0.012 Score=47.87 Aligned_cols=71 Identities=14% Similarity=-0.009 Sum_probs=55.5
Q ss_pred hhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCC-cchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhcc
Q 005502 362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGP-MLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRI 436 (693)
Q Consensus 362 ~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~-~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~l 436 (693)
.+..+...|.-++..|+ |.+|+..|.++++........ ...+.++.|.|.+|.++ |++..|+.-..+|+++
T Consensus 4 ~a~~~~~la~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~---g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 4 TANAYNNLARVYRELGR-YDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRL---GDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhh
Confidence 45566778888999999 999999999999884333222 23367899999999995 5699999999999876
No 483
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.95 E-value=0.41 Score=54.14 Aligned_cols=224 Identities=13% Similarity=0.122 Sum_probs=114.2
Q ss_pred CCCEEEEEeC-CCcEEEEECCCCcEEEEeccCCCcceEEEEEe--eCCCCCEEEEEeC-------CC-----------cE
Q 005502 61 KGSLLISGSD-DTHINVWSYSSRKLLHSIETGHSANVFCTKFV--PETSDELVVSGAG-------DA-----------EV 119 (693)
Q Consensus 61 ~g~~LaSgs~-Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~--p~~~~~~l~sgs~-------Dg-----------~V 119 (693)
||++|..-.. +.+|-..++...++-..+..+....+..++|. |++ .+++.++. || .+
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t--~yv~~~~e~~~PlpnDGk~l~~~~ey~~~v 217 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRT--GYVFCNGEFRIPLPNDGKDLDDPKKYRSLF 217 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCc--cEEEeCcccccccCCCCCEeecccceeEEE
Confidence 6788887653 66777778887776655544555556666664 443 34444332 33 34
Q ss_pred EEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEe---CCC------------cEEEEeCCCCCCCC
Q 005502 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS---EDG------------TLRQHDFRQGSSCP 184 (693)
Q Consensus 120 ~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs---~Dg------------~V~iwDlr~~~~~~ 184 (693)
.+.|..+. +....+.- ......++++|+ +.++++.+ +.| .+.++++.......
T Consensus 218 SvID~etm----------eV~~qV~V-dgnpd~v~~spd-Gk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~v 285 (635)
T PRK02888 218 TAVDAETM----------EVAWQVMV-DGNLDNVDTDYD-GKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAV 285 (635)
T ss_pred EEEECccc----------eEEEEEEe-CCCcccceECCC-CCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhh
Confidence 44444421 22222221 224456778884 44554543 221 22333332111000
Q ss_pred CCCCC--CcccceEEEeccC----CceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCC
Q 005502 185 PAGSS--HQECRNILLDLRC----GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRM 258 (693)
Q Consensus 185 ~~~~~--~~~~~~~l~~~~~----~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~ 258 (693)
..+.. -......++|..+ +.. .+...+ -......+.++|++..+++++..+.+|.|+|+.+.+.... ...
T Consensus 286 kdGK~~~V~gn~V~VID~~t~~~~~~~-v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~--~~~ 361 (635)
T PRK02888 286 KAGKFKTIGGSKVPVVDGRKAANAGSA-LTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFD--GKI 361 (635)
T ss_pred hCCCEEEECCCEEEEEECCccccCCcc-eEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhh--ccC
Confidence 00000 0011233444444 110 111111 1124567899998655666677799999999998653211 111
Q ss_pred CCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCC
Q 005502 259 SPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~lwDl~~ 310 (693)
.+..++.--. .-+......+|+++|....+-.-|.+|..||+..
T Consensus 362 ~~~~~vvaev--------evGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 362 KPRDAVVAEP--------ELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CccceEEEee--------ccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 1111111110 1122346789999998777777799999999987
No 484
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.031 Score=58.74 Aligned_cols=117 Identities=14% Similarity=0.077 Sum_probs=88.0
Q ss_pred cCcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCC------------------Ccchhhhhhh----H-----
Q 005502 358 TGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIG------------------PMLRHECLCI----R----- 410 (693)
Q Consensus 358 ~~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~------------------~~~~~~~~~N----R----- 410 (693)
..+.....+..-|.-.|..|+ |.+|+..++++...+|.... .++-..|++- +
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gd-n~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV 305 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGD-YFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFV 305 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcC-chHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhh
Confidence 345566777778888899999 99999999999988876421 1111112211 1
Q ss_pred HHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchh
Q 005502 411 AALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 477 (693)
Q Consensus 411 A~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~ 477 (693)
++|.+=- ..++..|+.-..++|+++|+++.||.-++.+|.++++.++|.-.|++++.+.|..-..
T Consensus 306 ~~~~l~~--~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~ 370 (564)
T KOG1174|consen 306 HAQLLYD--EKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEI 370 (564)
T ss_pred hhhhhhh--hhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHH
Confidence 2222210 2348889999999999999999999999999999999999999999999999876433
No 485
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.93 E-value=0.37 Score=51.08 Aligned_cols=186 Identities=13% Similarity=0.153 Sum_probs=109.2
Q ss_pred cEEEEECCCCcEEEEeccCCCcceEEEEEeeCCC-----CCEEEEEeC----------CCcEEEEEcCCCCCCCCCCCCC
Q 005502 73 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETS-----DELVVSGAG----------DAEVRLFNLSRFSGRGLDDNAI 137 (693)
Q Consensus 73 ~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~-----~~~l~sgs~----------Dg~V~vwdl~~~~~~~~~~~~~ 137 (693)
.|+|.|..+.+.+..+.-.....+++++...-.+ ..+|+.|.. .|.|.++++..... .....
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~---~~~~l 79 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPE---NNFKL 79 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS--------EE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccc---cceEE
Confidence 5889999888877766444455666666554211 367777754 28899999986300 00011
Q ss_pred CCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccc
Q 005502 138 TPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLS 217 (693)
Q Consensus 138 ~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ 217 (693)
+.+... ...++|++|+-. ++.++++ ..+.|.+|++...+.. .....++ ....
T Consensus 80 ~~i~~~-~~~g~V~ai~~~--~~~lv~~--~g~~l~v~~l~~~~~l---------~~~~~~~--------------~~~~ 131 (321)
T PF03178_consen 80 KLIHST-EVKGPVTAICSF--NGRLVVA--VGNKLYVYDLDNSKTL---------LKKAFYD--------------SPFY 131 (321)
T ss_dssp EEEEEE-EESS-EEEEEEE--TTEEEEE--ETTEEEEEEEETTSSE---------EEEEEE---------------BSSS
T ss_pred EEEEEE-eecCcceEhhhh--CCEEEEe--ecCEEEEEEccCcccc---------hhhheec--------------ceEE
Confidence 222222 357889999876 4454433 3488999999876411 0011110 1225
Q ss_pred eEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEE
Q 005502 218 LKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS 297 (693)
Q Consensus 218 v~sl~~sp~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sg 297 (693)
+.++.... +++++|..-..|.++..+... ..+..+. ......+++++.|-+++..++++
T Consensus 132 i~sl~~~~---~~I~vgD~~~sv~~~~~~~~~------------~~l~~va------~d~~~~~v~~~~~l~d~~~~i~~ 190 (321)
T PF03178_consen 132 ITSLSVFK---NYILVGDAMKSVSLLRYDEEN------------NKLILVA------RDYQPRWVTAAEFLVDEDTIIVG 190 (321)
T ss_dssp EEEEEEET---TEEEEEESSSSEEEEEEETTT------------E-EEEEE------EESS-BEEEEEEEE-SSSEEEEE
T ss_pred EEEEeccc---cEEEEEEcccCEEEEEEEccC------------CEEEEEE------ecCCCccEEEEEEecCCcEEEEE
Confidence 66666654 489999998888888544311 0011110 11112368999998777889999
Q ss_pred ecCCcEEEEECCC
Q 005502 298 YSGEHVYLMDVNH 310 (693)
Q Consensus 298 s~Dg~V~lwDl~~ 310 (693)
..+|.|+++....
T Consensus 191 D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 191 DKDGNLFVLRYNP 203 (321)
T ss_dssp ETTSEEEEEEE-S
T ss_pred cCCCeEEEEEECC
Confidence 9999999998873
No 486
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=95.88 E-value=0.025 Score=63.51 Aligned_cols=58 Identities=19% Similarity=0.117 Sum_probs=54.7
Q ss_pred cCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchh
Q 005502 420 KNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 477 (693)
Q Consensus 420 ~~d~~~A~~Dc~~Al~ldp~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~ 477 (693)
.+||.+|.++.+.+++++|-....+|+++-|..++++++.|.++|..+..++|++.++
T Consensus 498 ~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~ea 555 (777)
T KOG1128|consen 498 NKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEA 555 (777)
T ss_pred chhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhh
Confidence 4789999999999999999999999999999999999999999999999999998644
No 487
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.83 E-value=0.012 Score=61.99 Aligned_cols=69 Identities=22% Similarity=0.181 Sum_probs=60.4
Q ss_pred cCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHHHHHHH
Q 005502 420 KNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHI 488 (693)
Q Consensus 420 ~~d~~~A~~Dc~~Al~ldp~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l~~~i 488 (693)
.||+..|+.-..+||.-|...+.|+|..+..+.+||+++||++||-+++.+--++.++.-++..+.+-+
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~l 571 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELL 571 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999999999999999999888777777665665555544
No 488
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=95.81 E-value=0.02 Score=64.30 Aligned_cols=90 Identities=16% Similarity=-0.025 Sum_probs=79.5
Q ss_pred hhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHH
Q 005502 374 LEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQ 453 (693)
Q Consensus 374 ~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~KA~~r~a~al~~ 453 (693)
+..++ |.+|.+.++..++.+|-. ...|.++..|++++.. +..|+.+...++.++|++..|+-..+.||..
T Consensus 496 ~~~~~-fs~~~~hle~sl~~nplq------~~~wf~~G~~ALqlek---~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~ 565 (777)
T KOG1128|consen 496 LSNKD-FSEADKHLERSLEINPLQ------LGTWFGLGCAALQLEK---EQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR 565 (777)
T ss_pred ccchh-HHHHHHHHHHHhhcCccc------hhHHHhccHHHHHHhh---hHHHHHHHHHHhhcCCCchhhhhhhhHHHHH
Confidence 33466 999999999999988644 5678999999999654 9999999999999999999999999999999
Q ss_pred hccHHHHHHHHHHHcccCCC
Q 005502 454 LCKYKEALDFAIAAQCLDPS 473 (693)
Q Consensus 454 l~~~~eA~~~~~~~~~~~p~ 473 (693)
+++-.+|...++.+++-+-+
T Consensus 566 ~~~k~ra~~~l~EAlKcn~~ 585 (777)
T KOG1128|consen 566 LKKKKRAFRKLKEALKCNYQ 585 (777)
T ss_pred HhhhHHHHHHHHHHhhcCCC
Confidence 99999999999999987643
No 489
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.79 E-value=0.02 Score=54.50 Aligned_cols=66 Identities=21% Similarity=0.129 Sum_probs=54.4
Q ss_pred hHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCC
Q 005502 365 MLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS 440 (693)
Q Consensus 365 ~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~ 440 (693)
.+...|-..++.++ +..||+.+++||++.|.. -..+-.||-+|-|+.. |..||.|..+.+++||..
T Consensus 136 ly~Nraaa~iKl~k-~e~aI~dcsKaiel~pty------~kAl~RRAeayek~ek---~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 136 LYSNRAAALIKLRK-WESAIEDCSKAIELNPTY------EKALERRAEAYEKMEK---YEEALEDYKKILESDPSR 201 (271)
T ss_pred HHhhhHHHHHHhhh-HHHHHHHHHhhHhcCchh------HHHHHHHHHHHHhhhh---HHHHHHHHHHHHHhCcch
Confidence 34455666778889 999999999999999865 2334588999999866 999999999999999964
No 490
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.77 E-value=0.068 Score=59.71 Aligned_cols=124 Identities=19% Similarity=0.192 Sum_probs=86.0
Q ss_pred CCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcC
Q 005502 146 HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS 225 (693)
Q Consensus 146 h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp 225 (693)
|...|+--++.. ...+++.|+.-|.|.+|.-..+.... ....+....+..+.+|+
T Consensus 32 ~~~~v~lTc~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~------------------------~~~~~~~~~~~~~~vs~ 86 (726)
T KOG3621|consen 32 FPARVKLTCVDA-TEEYLAMGSSAGSVYLYNRHTGEMRK------------------------LKNEGATGITCVRSVSS 86 (726)
T ss_pred CcceEEEEEeec-CCceEEEecccceEEEEecCchhhhc------------------------ccccCccceEEEEEecc
Confidence 444555555555 56789999999999999865544210 00001234556677888
Q ss_pred CCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEE
Q 005502 226 TRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYL 305 (693)
Q Consensus 226 ~~~~~Latgs~Dg~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~fspdg~~L~sgs~Dg~V~l 305 (693)
+ ..++|.|+..|.|.+|-+....+ +...++.+.+.. |. ..||+++|++++..|++|...|+|.+
T Consensus 87 ~-e~lvAagt~~g~V~v~ql~~~~p-----------~~~~~~t~~d~~---~~-~rVTal~Ws~~~~k~ysGD~~Gkv~~ 150 (726)
T KOG3621|consen 87 V-EYLVAAGTASGRVSVFQLNKELP-----------RDLDYVTPCDKS---HK-CRVTALEWSKNGMKLYSGDSQGKVVL 150 (726)
T ss_pred h-hHhhhhhcCCceEEeehhhccCC-----------Ccceeecccccc---CC-ceEEEEEecccccEEeecCCCceEEE
Confidence 6 57899999999999998876322 223333333321 33 36999999999999999999999999
Q ss_pred EECCC
Q 005502 306 MDVNH 310 (693)
Q Consensus 306 wDl~~ 310 (693)
-.+++
T Consensus 151 ~~L~s 155 (726)
T KOG3621|consen 151 TELDS 155 (726)
T ss_pred EEech
Confidence 98887
No 491
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.75 E-value=0.011 Score=39.20 Aligned_cols=31 Identities=19% Similarity=0.239 Sum_probs=29.7
Q ss_pred hhhhHHHHHHHhccHHHHHHHHHHHcccCCC
Q 005502 443 AHLYMSEALEQLCKYKEALDFAIAAQCLDPS 473 (693)
Q Consensus 443 A~~r~a~al~~l~~~~eA~~~~~~~~~~~p~ 473 (693)
|+|++|.++..+|++++|.+.+++++..+|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 7899999999999999999999999999996
No 492
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.74 E-value=0.066 Score=58.74 Aligned_cols=138 Identities=13% Similarity=0.076 Sum_probs=100.8
Q ss_pred HHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhh
Q 005502 366 LVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHL 445 (693)
Q Consensus 366 lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~KA~~ 445 (693)
-.++|...+++|. ...|+-+|..|++..|.. +..+.-.+...-.. ++=..||.-..+||+|||++.+|+.
T Consensus 288 Pf~eG~~lm~nG~-L~~A~LafEAAVkqdP~h------aeAW~~LG~~qaEN---E~E~~ai~AL~rcl~LdP~NleaLm 357 (579)
T KOG1125|consen 288 PFKEGCNLMKNGD-LSEAALAFEAAVKQDPQH------AEAWQKLGITQAEN---ENEQNAISALRRCLELDPTNLEALM 357 (579)
T ss_pred hHHHHHHHHhcCC-chHHHHHHHHHHhhChHH------HHHHHHhhhHhhhc---cchHHHHHHHHHHHhcCCccHHHHH
Confidence 3567899999999 999999999999998876 44444444444332 2245588888999999999999999
Q ss_pred hHHHHHHHhccHHHHHHHHHHHcccCCCCc-----------------hhHHHHHHHHHHHHHHHHhhcccCCCCCCCCCC
Q 005502 446 YMSEALEQLCKYKEALDFAIAAQCLDPSNS-----------------VMAEKVENIKKHIAAAETEKNNKANDGGARSEP 508 (693)
Q Consensus 446 r~a~al~~l~~~~eA~~~~~~~~~~~p~~~-----------------~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ 508 (693)
-+|-+|..-|.-.+|+++|..-+...|.+. .-...+..+++...++..+...+...
T Consensus 358 aLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~Dp------- 430 (579)
T KOG1125|consen 358 ALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDP------- 430 (579)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCCh-------
Confidence 999999999999999999998876554331 11245677777777776554432221
Q ss_pred CCCcccccchhhhcc
Q 005502 509 RTGRVLSLSDIIYRS 523 (693)
Q Consensus 509 ~~~r~~~~~~~~~~~ 523 (693)
.|+.-.-+||..
T Consensus 431 ---dvQ~~LGVLy~l 442 (579)
T KOG1125|consen 431 ---DVQSGLGVLYNL 442 (579)
T ss_pred ---hHHhhhHHHHhc
Confidence 566666777753
No 493
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=95.74 E-value=0.11 Score=56.78 Aligned_cols=110 Identities=13% Similarity=-0.042 Sum_probs=61.1
Q ss_pred hhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcc
Q 005502 363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR 442 (693)
Q Consensus 363 a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~K 442 (693)
+.....+|-..+.+|+ |..|.+...++-+..+.. ...|..-|.+..++ |++..|..-+.+|.+.+|++.-
T Consensus 84 ~~~~~~~gl~a~~eGd-~~~A~k~l~~~~~~~~~p------~l~~llaA~aA~~~---g~~~~A~~~l~~A~~~~~~~~~ 153 (398)
T PRK10747 84 ARKQTEQALLKLAEGD-YQQVEKLMTRNADHAEQP------VVNYLLAAEAAQQR---GDEARANQHLERAAELADNDQL 153 (398)
T ss_pred HHHHHHHHHHHHhCCC-HHHHHHHHHHHHhcccch------HHHHHHHHHHHHHC---CCHHHHHHHHHHHHhcCCcchH
Confidence 3444455666666777 777765554433321111 12222222222443 4467777777777777776642
Q ss_pred -hhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHH
Q 005502 443 -AHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVE 482 (693)
Q Consensus 443 -A~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~ 482 (693)
...+.++.+...|++++|++.++++.+.+|++..+...+.
T Consensus 154 ~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~ 194 (398)
T PRK10747 154 PVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAE 194 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 3344566777777777777777777777777665544433
No 494
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=95.71 E-value=0.0055 Score=50.92 Aligned_cols=55 Identities=24% Similarity=0.251 Sum_probs=46.9
Q ss_pred CcHHHHHHhHhHhhccCCC--CcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCch
Q 005502 421 NDAQMAIRDCYNARRIDSS--SFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (693)
Q Consensus 421 ~d~~~A~~Dc~~Al~ldp~--~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~ 476 (693)
|++..|+.-+.++++.+|. +...++.+|+|++.+|+|++|++.+++ .+.+|.+..
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~ 59 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPD 59 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHH
Confidence 6799999999999999995 466788899999999999999999998 667776533
No 495
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.69 E-value=0.59 Score=51.39 Aligned_cols=122 Identities=12% Similarity=0.130 Sum_probs=73.9
Q ss_pred eEEeccCCCcEEEEEECCCCCEEEEEe---CC-CcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 005502 43 ERELEGHQGCVNAISWNSKGSLLISGS---DD-THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 118 (693)
Q Consensus 43 ~~~l~gH~~~V~~l~~s~~g~~LaSgs---~D-g~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~Dg~ 118 (693)
...+.--...+..=+|+|++..++--+ .. ..+.++++.+++....+. ..+.-..-+|+|++ ..++++...|+.
T Consensus 185 ~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--~~g~~~~P~fspDG-~~l~f~~~rdg~ 261 (425)
T COG0823 185 QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--FNGNNGAPAFSPDG-SKLAFSSSRDGS 261 (425)
T ss_pred eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--cCCccCCccCCCCC-CEEEEEECCCCC
Confidence 344444456777889999998766542 22 459999999887655542 34445667899994 455666677887
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 005502 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD 176 (693)
Q Consensus 119 V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwD 176 (693)
..||-+....+. ...+..-...-..=.|+|++..++.+.+..|.-.||-
T Consensus 262 ~~iy~~dl~~~~---------~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~ 310 (425)
T COG0823 262 PDIYLMDLDGKN---------LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYL 310 (425)
T ss_pred ccEEEEcCCCCc---------ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEE
Confidence 666644432211 1112211222224578897777777777777655443
No 496
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=95.67 E-value=0.053 Score=62.74 Aligned_cols=99 Identities=16% Similarity=0.152 Sum_probs=79.5
Q ss_pred cCCChhHHHHhhHHHHhcccCCC----------------CC----------cc--hhhhhhhHHHHHHhccccCcHHHHH
Q 005502 376 EGKHPYYGIEACNEVLEGHLSGI----------------GP----------ML--RHECLCIRAALLLKRKWKNDAQMAI 427 (693)
Q Consensus 376 ~g~~y~~Ai~~Y~~ai~~~~~~~----------------~~----------~~--~~~~~~NRA~~~lk~~~~~d~~~A~ 427 (693)
.+. |..|+..|.++|..+|.+. ++ .. -...|.|.|-||+-++. |-.||
T Consensus 625 kk~-~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~q---y~~AI 700 (1018)
T KOG2002|consen 625 KKH-QEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQ---YRLAI 700 (1018)
T ss_pred HHH-HHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHH---HHHHH
Confidence 344 7888888888888777552 00 00 13468899999999876 99999
Q ss_pred HhHhHhhcc--CCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhH
Q 005502 428 RDCYNARRI--DSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA 478 (693)
Q Consensus 428 ~Dc~~Al~l--dp~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~ 478 (693)
.-...+++. ..+.+..+.++|+|+++-+++.+|++.+..+..+.|.+..+.
T Consensus 701 qmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~ 753 (1018)
T KOG2002|consen 701 QMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVK 753 (1018)
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHH
Confidence 999999864 346788999999999999999999999999999999987543
No 497
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.048 Score=60.19 Aligned_cols=77 Identities=18% Similarity=0.267 Sum_probs=65.5
Q ss_pred CcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeE-EEEEecCCCcEEEEEeCCCc
Q 005502 93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVK-KLAVEVGNPHVVWSASEDGT 171 (693)
Q Consensus 93 ~~~I~sl~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~-~l~~sp~~~~~l~Sgs~Dg~ 171 (693)
...|.-+.|+|.- .+||++..+|.|.++.++. ..+.++.-|...|+ +++|.| ++++|+.|-.||+
T Consensus 20 ~~~i~~~ewnP~~--dLiA~~t~~gelli~R~n~-----------qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~ 85 (665)
T KOG4640|consen 20 PINIKRIEWNPKM--DLIATRTEKGELLIHRLNW-----------QRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGT 85 (665)
T ss_pred ccceEEEEEcCcc--chhheeccCCcEEEEEecc-----------ceeEeccCCCCccceeeeecC-CCCEEEEEecCCe
Confidence 4568889999994 7999999999999999883 44777776777777 999999 6899999999999
Q ss_pred EEEEeCCCCCCC
Q 005502 172 LRQHDFRQGSSC 183 (693)
Q Consensus 172 V~iwDlr~~~~~ 183 (693)
|++.|+.++...
T Consensus 86 I~L~Dve~~~~l 97 (665)
T KOG4640|consen 86 IRLHDVEKGGRL 97 (665)
T ss_pred EEEEEccCCCce
Confidence 999999987643
No 498
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=95.60 E-value=0.14 Score=56.23 Aligned_cols=101 Identities=13% Similarity=-0.053 Sum_probs=53.7
Q ss_pred hhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccc-----------------------
Q 005502 363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKW----------------------- 419 (693)
Q Consensus 363 a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~----------------------- 419 (693)
+.....+|-..+..|+ |..|.+...++.+..|.. ...|.-.|.++.+++.
T Consensus 84 ~~~~~~~glla~~~g~-~~~A~~~l~~~~~~~~~~------~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~ 156 (409)
T TIGR00540 84 AQKQTEEALLKLAEGD-YAKAEKLIAKNADHAAEP------VLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVE 156 (409)
T ss_pred HHHHHHHHHHHHhCCC-HHHHHHHHHHHhhcCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHH
Confidence 4444555666667777 777777777666655432 1112222222222111
Q ss_pred ---------cCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHccc
Q 005502 420 ---------KNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCL 470 (693)
Q Consensus 420 ---------~~d~~~A~~Dc~~Al~ldp~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~ 470 (693)
.|++..|+....+.++..|++..++.-.++++..+|++++|.+.+.++.+.
T Consensus 157 ~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 157 IARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA 216 (409)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 234555555555555555655555555556666666666555555555544
No 499
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.56 E-value=2.7 Score=45.73 Aligned_cols=204 Identities=16% Similarity=0.191 Sum_probs=126.8
Q ss_pred EEEEEECCCCC-EEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeC---CCcEEEEEcCCCC
Q 005502 53 VNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFNLSRFS 128 (693)
Q Consensus 53 V~~l~~s~~g~-~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sl~f~p~~~~~~l~sgs~---Dg~V~vwdl~~~~ 128 (693)
-+.+..++.+. ..++...+..|.+.|..+.+.+..+..+. ....++|.|+. ..+..+.. +++|.+.|-...
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~--~~vYV~n~~~~~~~vsvid~~t~- 150 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDG--KYVYVANAGNGNNTVSVIDAATN- 150 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCC--CEEEEEecccCCceEEEEeCCCC-
Confidence 44677888777 55556667899999988888888774444 56789999984 44444433 677888777754
Q ss_pred CCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeee
Q 005502 129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 208 (693)
Q Consensus 129 ~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~Sgs~Dg~V~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 208 (693)
........-..+ ..+++.|.+...+++-..++.|.+.|........ .. .+.. +
T Consensus 151 ---------~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~--~~-------------~~~~--~ 203 (381)
T COG3391 151 ---------KVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR--GS-------------VGSL--V 203 (381)
T ss_pred ---------eEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec--cc-------------cccc--c
Confidence 222232222223 8899999665566666688999999966543210 00 0000 0
Q ss_pred cCCCCCccceEEEEEcCCCCcEEEEEeCC--CcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEE
Q 005502 209 ADPPKQTLSLKSCDISSTRPHLLLVGGSD--AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT 286 (693)
Q Consensus 209 ~~~~~~~~~v~sl~~sp~~~~~Latgs~D--g~I~lwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~V~~v~ 286 (693)
.....-..+.++|++....++-..+ +.|...|..+......- . + . ... ....+.
T Consensus 204 ----~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~------------~-~---~---~~~-~~~~v~ 259 (381)
T COG3391 204 ----GVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATD------------L-P---V---GSG-APRGVA 259 (381)
T ss_pred ----ccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEec------------c-c---c---ccC-CCCcee
Confidence 0011234578899854455544444 58888888765432210 0 0 0 011 134689
Q ss_pred EcCCCCEEEEEec-CCcEEEEECCCCC
Q 005502 287 FSPNGEEVLLSYS-GEHVYLMDVNHAG 312 (693)
Q Consensus 287 fspdg~~L~sgs~-Dg~V~lwDl~~~~ 312 (693)
++|+|.++.+... .+.|.+.|..+..
T Consensus 260 ~~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 260 VDPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred ECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence 9999999988855 5899999988854
No 500
>PRK11906 transcriptional regulator; Provisional
Probab=95.54 E-value=0.048 Score=59.00 Aligned_cols=88 Identities=14% Similarity=-0.034 Sum_probs=71.5
Q ss_pred hhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhccHHH
Q 005502 380 PYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKE 459 (693)
Q Consensus 380 y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~A~~Dc~~Al~ldp~~~KA~~r~a~al~~l~~~~e 459 (693)
-.+|+.+-.+|++..+.+ +..+...+.++.- .+++..|+.-..+|+.|+|++.-++|.+|..+.--|+.++
T Consensus 320 ~~~a~~~A~rAveld~~D------a~a~~~~g~~~~~---~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~ 390 (458)
T PRK11906 320 AQKALELLDYVSDITTVD------GKILAIMGLITGL---SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEE 390 (458)
T ss_pred HHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHh---hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHH
Confidence 456777777788877766 4444444444444 3448899999999999999999999999999999999999
Q ss_pred HHHHHHHHcccCCCCch
Q 005502 460 ALDFAIAAQCLDPSNSV 476 (693)
Q Consensus 460 A~~~~~~~~~~~p~~~~ 476 (693)
|.+.++++++++|--..
T Consensus 391 a~~~i~~alrLsP~~~~ 407 (458)
T PRK11906 391 ARICIDKSLQLEPRRRK 407 (458)
T ss_pred HHHHHHHHhccCchhhH
Confidence 99999999999997543
Done!