Query 005504
Match_columns 693
No_of_seqs 584 out of 4705
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 00:30:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005504.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005504hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1160 Predicted GTPases [Gen 100.0 1.1E-95 2E-100 773.5 46.6 439 164-669 4-443 (444)
2 PRK03003 GTP-binding protein D 100.0 6.8E-73 1.5E-77 633.8 52.9 432 163-667 38-470 (472)
3 TIGR03594 GTPase_EngA ribosome 100.0 2E-72 4.3E-77 626.0 50.7 428 165-662 1-429 (429)
4 PRK00093 GTP-binding protein D 100.0 2.1E-71 4.5E-76 618.7 52.5 431 164-666 2-433 (435)
5 PRK09518 bifunctional cytidyla 100.0 1.7E-69 3.7E-74 632.8 52.0 436 161-667 273-709 (712)
6 KOG1191 Mitochondrial GTPase [ 100.0 3.9E-38 8.3E-43 333.6 2.4 422 164-666 76-509 (531)
7 COG1160 Predicted GTPases [Gen 100.0 1.8E-27 3.9E-32 253.6 24.0 272 372-661 4-331 (444)
8 COG0486 ThdF Predicted GTPase 99.9 3.1E-25 6.7E-30 237.2 19.6 163 370-551 216-378 (454)
9 PF02421 FeoB_N: Ferrous iron 99.9 1.6E-25 3.5E-30 211.7 14.8 156 372-544 1-156 (156)
10 COG1159 Era GTPase [General fu 99.9 1.4E-24 3.1E-29 220.1 17.1 174 371-556 6-179 (298)
11 COG1159 Era GTPase [General fu 99.9 1.4E-24 3E-29 220.1 16.5 163 164-358 7-174 (298)
12 PF02421 FeoB_N: Ferrous iron 99.9 1.6E-23 3.5E-28 198.1 14.2 150 165-351 2-156 (156)
13 KOG1144 Translation initiation 99.9 7.2E-24 1.6E-28 231.7 12.2 207 160-430 472-740 (1064)
14 COG0486 ThdF Predicted GTPase 99.9 1.3E-22 2.8E-27 217.1 19.6 161 164-358 218-378 (454)
15 cd01895 EngA2 EngA2 subfamily. 99.9 2.9E-22 6.3E-27 193.2 19.8 172 371-547 2-173 (174)
16 TIGR00436 era GTP-binding prot 99.9 1.7E-22 3.6E-27 211.1 19.3 166 373-552 2-167 (270)
17 PRK09518 bifunctional cytidyla 99.9 3.3E-21 7.1E-26 226.4 29.3 164 370-550 274-437 (712)
18 TIGR03156 GTP_HflX GTP-binding 99.9 1.1E-21 2.5E-26 211.1 19.9 182 140-354 166-350 (351)
19 PF14714 KH_dom-like: KH-domai 99.9 9.4E-23 2E-27 170.7 8.7 80 554-662 1-80 (80)
20 cd01858 NGP_1 NGP-1. Autoanti 99.9 1.1E-21 2.4E-26 188.1 14.5 153 266-430 2-157 (157)
21 PRK15494 era GTPase Era; Provi 99.9 1.9E-21 4.2E-26 209.0 17.7 167 370-551 51-218 (339)
22 COG2262 HflX GTPases [General 99.9 2.3E-21 4.9E-26 204.0 17.3 201 124-357 153-357 (411)
23 TIGR00436 era GTP-binding prot 99.9 3.2E-21 6.9E-26 201.5 18.1 161 165-358 2-166 (270)
24 TIGR03594 GTPase_EngA ribosome 99.9 2.3E-20 4.9E-25 208.1 25.6 159 373-548 1-159 (429)
25 cd04171 SelB SelB subfamily. 99.9 1.3E-20 2.8E-25 180.5 18.2 157 373-546 2-163 (164)
26 cd01894 EngA1 EngA1 subfamily. 99.9 1.6E-20 3.4E-25 178.5 17.5 156 167-355 1-157 (157)
27 PRK15494 era GTPase Era; Provi 99.9 1.3E-20 2.9E-25 202.5 18.9 163 163-357 52-217 (339)
28 TIGR03156 GTP_HflX GTP-binding 99.9 1.4E-20 3.1E-25 202.6 18.6 159 369-546 187-349 (351)
29 PRK05291 trmE tRNA modificatio 99.9 1.1E-20 2.5E-25 210.2 18.1 158 370-550 214-371 (449)
30 cd01884 EF_Tu EF-Tu subfamily. 99.9 2.3E-20 5E-25 185.1 18.2 150 372-538 3-172 (195)
31 PRK11058 GTPase HflX; Provisio 99.9 1.6E-20 3.4E-25 206.7 18.6 166 160-357 194-363 (426)
32 PF00009 GTP_EFTU: Elongation 99.8 7.7E-21 1.7E-25 187.8 14.4 160 371-548 3-186 (188)
33 cd01894 EngA1 EngA1 subfamily. 99.8 2.8E-20 6E-25 176.8 17.1 155 375-546 1-155 (157)
34 PRK12299 obgE GTPase CgtA; Rev 99.8 4.2E-20 9.1E-25 197.4 20.0 165 371-549 158-328 (335)
35 PRK12298 obgE GTPase CgtA; Rev 99.8 4.1E-20 8.8E-25 201.3 19.6 165 372-550 160-334 (390)
36 PRK00089 era GTPase Era; Revie 99.8 5.5E-20 1.2E-24 194.5 20.1 167 371-549 5-171 (292)
37 cd01898 Obg Obg subfamily. Th 99.8 4.6E-20 9.9E-25 178.3 17.6 160 373-547 2-169 (170)
38 TIGR00450 mnmE_trmE_thdF tRNA 99.8 5.3E-20 1.1E-24 203.7 19.8 160 369-549 201-360 (442)
39 PRK03003 GTP-binding protein D 99.8 5.5E-20 1.2E-24 206.7 19.5 162 371-549 38-199 (472)
40 cd04164 trmE TrmE (MnmE, ThdF, 99.8 1.2E-19 2.7E-24 172.1 17.7 154 372-547 2-155 (157)
41 cd01897 NOG NOG1 is a nucleola 99.8 1.7E-19 3.8E-24 174.0 17.9 160 372-547 1-166 (168)
42 COG0218 Predicted GTPase [Gene 99.8 2.2E-19 4.8E-24 173.3 18.1 171 156-356 17-197 (200)
43 cd01889 SelB_euk SelB subfamil 99.8 1.3E-19 2.9E-24 179.5 17.0 161 372-546 1-183 (192)
44 cd04166 CysN_ATPS CysN_ATPS su 99.8 5.7E-20 1.2E-24 184.6 14.4 153 373-541 1-186 (208)
45 PRK12296 obgE GTPase CgtA; Rev 99.8 1.8E-19 3.8E-24 199.5 19.5 172 371-558 159-349 (500)
46 PRK12299 obgE GTPase CgtA; Rev 99.8 2E-19 4.4E-24 192.2 18.3 165 161-357 156-329 (335)
47 cd01897 NOG NOG1 is a nucleola 99.8 2.6E-19 5.6E-24 172.8 17.3 161 164-355 1-167 (168)
48 cd01878 HflX HflX subfamily. 99.8 3.1E-19 6.7E-24 178.5 18.0 164 160-355 38-204 (204)
49 PRK11058 GTPase HflX; Provisio 99.8 2.4E-19 5.2E-24 197.4 18.8 162 370-549 196-362 (426)
50 PRK00089 era GTPase Era; Revie 99.8 2.8E-19 6.1E-24 189.0 18.2 162 164-357 6-172 (292)
51 cd01879 FeoB Ferrous iron tran 99.8 2.2E-19 4.8E-24 171.0 15.5 155 376-547 1-155 (158)
52 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 5.3E-19 1.2E-23 170.3 17.9 158 372-548 1-165 (168)
53 PRK00093 GTP-binding protein D 99.8 3.6E-19 7.8E-24 198.8 19.2 159 372-547 2-160 (435)
54 TIGR03596 GTPase_YlqF ribosome 99.8 1.8E-19 3.9E-24 188.6 15.7 162 263-432 12-175 (276)
55 cd01890 LepA LepA subfamily. 99.8 4.2E-19 9.1E-24 173.3 17.3 157 372-547 1-175 (179)
56 PRK05291 trmE tRNA modificatio 99.8 1.7E-19 3.7E-24 200.8 16.2 155 164-356 216-370 (449)
57 TIGR02729 Obg_CgtA Obg family 99.8 3.9E-19 8.5E-24 189.8 17.7 162 371-547 157-327 (329)
58 TIGR03598 GTPase_YsxC ribosome 99.8 5.4E-19 1.2E-23 173.2 17.1 160 369-538 16-179 (179)
59 cd04163 Era Era subfamily. Er 99.8 1.6E-18 3.5E-23 165.5 19.9 164 371-546 3-166 (168)
60 cd01859 MJ1464 MJ1464. This f 99.8 3.7E-19 8.1E-24 170.3 15.3 151 264-430 4-156 (156)
61 PRK12296 obgE GTPase CgtA; Rev 99.8 3.7E-19 8E-24 196.9 17.4 166 161-358 157-342 (500)
62 cd01849 YlqF_related_GTPase Yl 99.8 1.6E-19 3.4E-24 172.8 12.6 151 274-430 1-155 (155)
63 cd04171 SelB SelB subfamily. 99.8 5.3E-19 1.2E-23 169.3 16.4 150 165-353 2-163 (164)
64 COG0370 FeoB Fe2+ transport sy 99.8 3.1E-19 6.8E-24 198.8 16.7 164 372-552 4-167 (653)
65 PRK12297 obgE GTPase CgtA; Rev 99.8 6.8E-19 1.5E-23 192.7 19.0 161 372-550 159-328 (424)
66 cd01856 YlqF YlqF. Proteins o 99.8 3.2E-19 7E-24 173.5 14.7 159 263-430 10-170 (171)
67 PRK12297 obgE GTPase CgtA; Rev 99.8 5.5E-19 1.2E-23 193.4 18.0 164 162-358 157-329 (424)
68 cd01898 Obg Obg subfamily. Th 99.8 5E-19 1.1E-23 171.0 15.7 158 165-354 2-169 (170)
69 cd04142 RRP22 RRP22 subfamily. 99.8 9E-19 1.9E-23 174.5 17.9 170 372-554 1-179 (198)
70 cd01891 TypA_BipA TypA (tyrosi 99.8 8.5E-19 1.8E-23 174.0 17.2 153 372-543 3-176 (194)
71 cd01878 HflX HflX subfamily. 99.8 1E-18 2.2E-23 174.8 17.6 160 369-546 39-202 (204)
72 PRK12317 elongation factor 1-a 99.8 3.1E-19 6.6E-24 198.4 15.3 158 369-542 4-198 (425)
73 PRK09563 rbgA GTPase YlqF; Rev 99.8 3.3E-19 7.1E-24 187.7 14.8 162 264-433 16-179 (287)
74 cd01857 HSR1_MMR1 HSR1/MMR1. 99.8 4.3E-19 9.2E-24 167.1 14.0 135 264-431 3-139 (141)
75 cd00881 GTP_translation_factor 99.8 1.3E-18 2.7E-23 170.8 17.5 157 373-547 1-185 (189)
76 TIGR02729 Obg_CgtA Obg family 99.8 8.1E-19 1.8E-23 187.4 17.4 163 161-355 155-328 (329)
77 COG1084 Predicted GTPase [Gene 99.8 2.6E-18 5.7E-23 175.8 19.7 162 161-354 166-334 (346)
78 cd04164 trmE TrmE (MnmE, ThdF, 99.8 1.8E-18 3.9E-23 164.1 17.3 154 165-355 3-156 (157)
79 PF00009 GTP_EFTU: Elongation 99.8 4E-19 8.7E-24 175.6 13.2 154 163-356 3-187 (188)
80 PRK12298 obgE GTPase CgtA; Rev 99.8 9.7E-19 2.1E-23 190.5 17.1 164 162-357 158-334 (390)
81 PRK04213 GTP-binding protein; 99.8 1.8E-18 4E-23 172.4 17.6 165 370-548 8-191 (201)
82 COG1163 DRG Predicted GTPase [ 99.8 5E-19 1.1E-23 180.1 13.6 211 111-356 9-289 (365)
83 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 1.7E-18 3.7E-23 166.8 16.8 152 164-356 1-166 (168)
84 CHL00071 tufA elongation facto 99.8 1.2E-18 2.5E-23 192.4 17.1 153 368-537 9-181 (409)
85 cd01855 YqeH YqeH. YqeH is an 99.8 5.5E-19 1.2E-23 174.9 13.0 148 262-430 24-190 (190)
86 cd01895 EngA2 EngA2 subfamily. 99.8 5.1E-18 1.1E-22 163.5 18.8 163 163-354 2-173 (174)
87 COG0218 Predicted GTPase [Gene 99.8 4.6E-18 1E-22 164.2 18.2 167 370-548 23-196 (200)
88 PLN03118 Rab family protein; P 99.8 2.2E-18 4.7E-23 173.5 16.4 182 371-574 14-205 (211)
89 PRK00454 engB GTP-binding prot 99.8 5.8E-18 1.3E-22 167.8 18.4 170 369-549 22-194 (196)
90 PRK09554 feoB ferrous iron tra 99.8 2.4E-18 5.2E-23 201.4 18.1 165 372-549 4-168 (772)
91 KOG1191 Mitochondrial GTPase [ 99.8 1E-18 2.3E-23 186.3 13.2 164 164-356 269-450 (531)
92 KOG0084 GTPase Rab1/YPT1, smal 99.8 2.6E-18 5.7E-23 163.4 14.4 162 369-552 7-175 (205)
93 cd04120 Rab12 Rab12 subfamily. 99.8 5.8E-18 1.2E-22 169.0 17.6 156 373-549 2-163 (202)
94 cd01881 Obg_like The Obg-like 99.8 2.7E-18 5.8E-23 166.6 14.7 157 376-546 1-174 (176)
95 cd04145 M_R_Ras_like M-Ras/R-R 99.8 8.4E-18 1.8E-22 161.3 17.8 153 372-547 3-162 (164)
96 KOG1423 Ras-like GTPase ERA [C 99.8 2.2E-18 4.8E-23 173.5 14.0 180 367-549 68-271 (379)
97 TIGR00450 mnmE_trmE_thdF tRNA 99.8 4.2E-18 9E-23 188.7 17.6 157 163-356 203-360 (442)
98 cd04160 Arfrp1 Arfrp1 subfamil 99.8 2.8E-18 6.1E-23 165.4 14.2 155 373-545 1-165 (167)
99 cd01890 LepA LepA subfamily. 99.8 6.4E-18 1.4E-22 164.9 16.8 152 165-356 2-177 (179)
100 PRK04213 GTP-binding protein; 99.8 9.3E-18 2E-22 167.4 18.2 165 163-358 9-194 (201)
101 cd04136 Rap_like Rap-like subf 99.8 5.9E-18 1.3E-22 162.2 16.1 152 372-546 2-160 (163)
102 cd01889 SelB_euk SelB subfamil 99.8 5.9E-18 1.3E-22 167.7 15.6 153 165-357 2-187 (192)
103 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 4.6E-18 1E-22 167.2 14.7 161 371-548 3-169 (183)
104 PRK12736 elongation factor Tu; 99.8 6.6E-18 1.4E-22 185.5 17.5 163 368-547 9-199 (394)
105 cd01881 Obg_like The Obg-like 99.8 2.6E-18 5.5E-23 166.7 12.5 155 168-354 1-175 (176)
106 cd01879 FeoB Ferrous iron tran 99.8 5.9E-18 1.3E-22 161.2 14.8 153 168-355 1-156 (158)
107 TIGR00475 selB selenocysteine- 99.8 8.3E-18 1.8E-22 192.5 18.5 161 372-550 1-167 (581)
108 PRK10512 selenocysteinyl-tRNA- 99.8 1.1E-17 2.4E-22 192.1 19.4 159 373-548 2-165 (614)
109 cd04163 Era Era subfamily. Er 99.8 1.9E-17 4E-22 158.1 17.9 161 163-355 3-168 (168)
110 cd04111 Rab39 Rab39 subfamily. 99.8 8E-18 1.7E-22 169.4 15.9 159 372-551 3-168 (211)
111 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.8 1.6E-17 3.4E-22 160.2 17.3 155 372-548 3-163 (166)
112 cd04124 RabL2 RabL2 subfamily. 99.8 7.7E-18 1.7E-22 161.9 15.1 154 372-549 1-158 (161)
113 cd04149 Arf6 Arf6 subfamily. 99.8 4.8E-18 1E-22 164.7 13.5 149 371-545 9-166 (168)
114 cd00881 GTP_translation_factor 99.8 1.1E-17 2.4E-22 164.0 16.2 153 165-357 1-188 (189)
115 cd01893 Miro1 Miro1 subfamily. 99.8 2.1E-17 4.5E-22 159.7 17.7 158 372-548 1-163 (166)
116 PLN03127 Elongation factor Tu; 99.8 1.7E-17 3.6E-22 184.1 19.3 162 369-547 59-250 (447)
117 cd04138 H_N_K_Ras_like H-Ras/N 99.8 1.2E-17 2.7E-22 159.4 15.8 151 372-546 2-159 (162)
118 cd00880 Era_like Era (E. coli 99.8 3E-17 6.6E-22 154.7 18.3 162 376-547 1-162 (163)
119 cd04112 Rab26 Rab26 subfamily. 99.8 2E-17 4.4E-22 163.7 17.8 157 372-549 1-163 (191)
120 cd01867 Rab8_Rab10_Rab13_like 99.8 1.6E-17 3.5E-22 160.5 16.7 157 371-548 3-164 (167)
121 cd04154 Arl2 Arl2 subfamily. 99.8 1.1E-17 2.4E-22 162.7 15.7 149 371-545 14-171 (173)
122 cd04175 Rap1 Rap1 subgroup. T 99.8 1.4E-17 3E-22 160.2 16.2 153 372-547 2-161 (164)
123 cd04107 Rab32_Rab38 Rab38/Rab3 99.8 1.9E-17 4.1E-22 165.3 17.6 157 372-548 1-167 (201)
124 cd01883 EF1_alpha Eukaryotic e 99.8 7.1E-18 1.5E-22 170.8 14.4 151 373-538 1-194 (219)
125 smart00173 RAS Ras subfamily o 99.8 1.5E-17 3.2E-22 159.8 15.9 154 372-548 1-161 (164)
126 cd01864 Rab19 Rab19 subfamily. 99.8 2.4E-17 5.1E-22 158.9 17.3 155 371-546 3-163 (165)
127 cd01866 Rab2 Rab2 subfamily. 99.8 2.3E-17 5E-22 159.7 17.2 157 371-548 4-165 (168)
128 cd04144 Ras2 Ras2 subfamily. 99.8 1.4E-17 3E-22 164.8 15.8 153 373-548 1-162 (190)
129 TIGR02528 EutP ethanolamine ut 99.8 9.6E-18 2.1E-22 157.4 13.6 140 373-545 2-141 (142)
130 COG0370 FeoB Fe2+ transport sy 99.8 1.1E-17 2.5E-22 186.4 16.3 158 163-357 3-165 (653)
131 cd01861 Rab6 Rab6 subfamily. 99.8 2.7E-17 5.9E-22 157.4 16.9 153 372-546 1-159 (161)
132 PRK12735 elongation factor Tu; 99.8 1.8E-17 4E-22 182.1 17.8 163 368-547 9-201 (396)
133 TIGR03598 GTPase_YsxC ribosome 99.8 2.1E-17 4.6E-22 161.8 16.4 157 159-345 14-179 (179)
134 TIGR00231 small_GTP small GTP- 99.8 9.7E-18 2.1E-22 158.0 13.4 157 372-545 2-160 (161)
135 cd04140 ARHI_like ARHI subfami 99.8 1.3E-17 2.7E-22 161.0 14.4 154 372-547 2-163 (165)
136 cd04119 RJL RJL (RabJ-Like) su 99.8 4E-17 8.6E-22 156.8 17.9 155 372-547 1-165 (168)
137 KOG1423 Ras-like GTPase ERA [C 99.8 9.7E-18 2.1E-22 168.9 13.9 168 163-357 72-272 (379)
138 cd01891 TypA_BipA TypA (tyrosi 99.8 2.2E-17 4.8E-22 163.9 16.5 143 164-346 3-172 (194)
139 KOG0394 Ras-related GTPase [Ge 99.8 8.7E-18 1.9E-22 157.6 12.6 165 369-551 7-180 (210)
140 cd04166 CysN_ATPS CysN_ATPS su 99.7 5.6E-18 1.2E-22 170.1 12.2 144 165-347 1-185 (208)
141 cd04157 Arl6 Arl6 subfamily. 99.7 1.6E-17 3.4E-22 159.0 14.8 149 373-545 1-160 (162)
142 TIGR00487 IF-2 translation ini 99.7 2.4E-17 5.3E-22 187.9 18.8 159 369-546 85-247 (587)
143 COG0532 InfB Translation initi 99.7 1.7E-17 3.7E-22 180.3 16.6 154 162-356 4-170 (509)
144 cd01868 Rab11_like Rab11-like. 99.7 2.5E-17 5.3E-22 158.5 16.1 153 372-546 4-162 (165)
145 cd04127 Rab27A Rab27a subfamil 99.7 4E-17 8.6E-22 159.5 17.7 156 371-547 4-175 (180)
146 KOG1489 Predicted GTP-binding 99.7 1E-17 2.3E-22 169.8 13.8 161 161-353 194-364 (366)
147 cd01860 Rab5_related Rab5-rela 99.7 3E-17 6.6E-22 157.3 16.6 155 372-547 2-161 (163)
148 cd01874 Cdc42 Cdc42 subfamily. 99.7 2.6E-17 5.7E-22 160.7 16.3 159 372-547 2-173 (175)
149 TIGR00485 EF-Tu translation el 99.7 3.8E-17 8.2E-22 179.7 19.4 150 369-535 10-179 (394)
150 cd01865 Rab3 Rab3 subfamily. 99.7 1.9E-17 4.2E-22 159.7 15.0 155 372-547 2-161 (165)
151 cd04109 Rab28 Rab28 subfamily. 99.7 2.3E-17 4.9E-22 166.6 16.0 157 372-549 1-166 (215)
152 cd01886 EF-G Elongation factor 99.7 3.5E-17 7.5E-22 170.3 17.8 113 373-500 1-130 (270)
153 cd04113 Rab4 Rab4 subfamily. 99.7 2.9E-17 6.4E-22 157.3 16.0 154 372-546 1-159 (161)
154 cd04151 Arl1 Arl1 subfamily. 99.7 2E-17 4.3E-22 158.3 14.8 152 373-546 1-157 (158)
155 cd04156 ARLTS1 ARLTS1 subfamil 99.7 1.8E-17 3.9E-22 158.5 14.5 153 373-546 1-159 (160)
156 cd00877 Ran Ran (Ras-related n 99.7 2.2E-17 4.8E-22 159.7 15.2 154 372-548 1-158 (166)
157 cd01862 Rab7 Rab7 subfamily. 99.7 5.8E-17 1.3E-21 156.7 18.0 158 372-550 1-168 (172)
158 cd04101 RabL4 RabL4 (Rab-like4 99.7 6E-17 1.3E-21 155.6 17.8 156 372-547 1-162 (164)
159 KOG1489 Predicted GTP-binding 99.7 1.2E-17 2.6E-22 169.3 13.3 159 372-546 197-364 (366)
160 cd04178 Nucleostemin_like Nucl 99.7 1.6E-17 3.4E-22 161.3 13.6 143 274-430 1-172 (172)
161 PRK00049 elongation factor Tu; 99.7 2.9E-17 6.4E-22 180.4 17.3 161 369-546 10-200 (396)
162 cd04132 Rho4_like Rho4-like su 99.7 3.4E-17 7.4E-22 161.2 16.0 161 372-549 1-167 (187)
163 PRK00454 engB GTP-binding prot 99.7 8.8E-17 1.9E-21 159.3 19.0 165 162-356 23-194 (196)
164 cd04168 TetM_like Tet(M)-like 99.7 5E-17 1.1E-21 166.2 17.7 161 373-548 1-234 (237)
165 KOG0092 GTPase Rab5/YPT51 and 99.7 1.7E-17 3.7E-22 157.4 13.0 158 371-549 5-167 (200)
166 PRK15467 ethanolamine utilizat 99.7 3.5E-17 7.6E-22 157.1 15.4 145 373-550 3-148 (158)
167 KOG0078 GTP-binding protein SE 99.7 4.6E-17 1E-21 157.3 16.0 160 369-550 10-175 (207)
168 cd04121 Rab40 Rab40 subfamily. 99.7 5.2E-17 1.1E-21 160.5 16.9 157 370-548 5-166 (189)
169 PF01926 MMR_HSR1: 50S ribosom 99.7 2.6E-17 5.5E-22 149.4 13.6 116 373-495 1-116 (116)
170 TIGR03597 GTPase_YqeH ribosome 99.7 1.1E-17 2.3E-22 181.4 13.1 211 262-501 53-281 (360)
171 smart00175 RAB Rab subfamily o 99.7 6.6E-17 1.4E-21 154.9 17.2 155 372-548 1-161 (164)
172 cd04116 Rab9 Rab9 subfamily. 99.7 4.8E-17 1.1E-21 157.4 16.2 155 371-546 5-168 (170)
173 cd04134 Rho3 Rho3 subfamily. 99.7 2.6E-17 5.6E-22 162.7 14.5 160 372-548 1-173 (189)
174 cd00878 Arf_Arl Arf (ADP-ribos 99.7 2.8E-17 6E-22 157.0 14.3 152 373-546 1-157 (158)
175 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 5E-17 1.1E-21 158.4 16.3 152 372-545 16-172 (174)
176 TIGR00437 feoB ferrous iron tr 99.7 2.4E-17 5.1E-22 188.9 16.3 154 378-548 1-154 (591)
177 cd01888 eIF2_gamma eIF2-gamma 99.7 4.6E-17 1E-21 162.9 16.4 158 372-546 1-196 (203)
178 PRK12289 GTPase RsgA; Reviewed 99.7 2.3E-17 5E-22 176.9 15.0 144 268-435 85-239 (352)
179 cd04108 Rab36_Rab34 Rab34/Rab3 99.7 6.2E-17 1.3E-21 157.3 16.7 158 373-549 2-165 (170)
180 cd04165 GTPBP1_like GTPBP1-lik 99.7 5.8E-17 1.3E-21 164.2 17.1 156 373-546 1-220 (224)
181 PRK09866 hypothetical protein; 99.7 3.7E-16 8.1E-21 173.3 24.7 117 420-546 230-350 (741)
182 PRK05306 infB translation init 99.7 3.7E-17 8E-22 190.5 17.6 158 369-546 288-449 (787)
183 cd04176 Rap2 Rap2 subgroup. T 99.7 3.2E-17 6.8E-22 157.5 14.3 152 372-546 2-160 (163)
184 cd01884 EF_Tu EF-Tu subfamily. 99.7 4.7E-17 1E-21 161.4 15.9 141 164-344 3-171 (195)
185 cd04126 Rab20 Rab20 subfamily. 99.7 5.4E-17 1.2E-21 163.9 16.5 158 372-549 1-190 (220)
186 cd04143 Rhes_like Rhes_like su 99.7 5.2E-17 1.1E-21 167.1 16.7 155 372-548 1-170 (247)
187 cd04106 Rab23_lke Rab23-like s 99.7 5.5E-17 1.2E-21 155.4 15.7 154 372-546 1-160 (162)
188 PRK05306 infB translation init 99.7 3.4E-17 7.4E-22 190.8 17.1 153 160-353 287-449 (787)
189 cd01861 Rab6 Rab6 subfamily. 99.7 5.2E-17 1.1E-21 155.4 15.5 151 165-354 2-160 (161)
190 COG2262 HflX GTPases [General 99.7 8E-17 1.7E-21 169.9 18.2 165 367-549 188-356 (411)
191 cd04118 Rab24 Rab24 subfamily. 99.7 3.3E-17 7.1E-22 162.2 14.5 160 372-549 1-166 (193)
192 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.7 3E-17 6.4E-22 155.5 13.3 157 371-549 22-185 (221)
193 TIGR00487 IF-2 translation ini 99.7 3.8E-17 8.3E-22 186.3 16.9 151 162-353 86-247 (587)
194 cd04142 RRP22 RRP22 subfamily. 99.7 5.8E-17 1.3E-21 161.5 16.1 161 165-356 2-174 (198)
195 cd04150 Arf1_5_like Arf1-Arf5- 99.7 6.9E-17 1.5E-21 155.1 16.0 151 372-545 1-157 (159)
196 PF01926 MMR_HSR1: 50S ribosom 99.7 2.8E-17 6E-22 149.2 12.6 116 165-312 1-116 (116)
197 cd01863 Rab18 Rab18 subfamily. 99.7 7E-17 1.5E-21 154.6 15.9 153 372-546 1-159 (161)
198 cd04128 Spg1 Spg1p. Spg1p (se 99.7 6.9E-17 1.5E-21 158.8 16.2 159 372-548 1-165 (182)
199 cd04122 Rab14 Rab14 subfamily. 99.7 8.3E-17 1.8E-21 155.3 16.5 153 372-547 3-162 (166)
200 cd00154 Rab Rab family. Rab G 99.7 6.7E-17 1.5E-21 152.9 15.5 153 372-545 1-158 (159)
201 TIGR00491 aIF-2 translation in 99.7 9.3E-17 2E-21 182.8 19.4 154 162-357 3-217 (590)
202 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.7 6.5E-17 1.4E-21 157.4 15.7 153 372-547 3-162 (172)
203 CHL00189 infB translation init 99.7 5.4E-17 1.2E-21 187.5 17.5 161 369-548 242-409 (742)
204 PLN03126 Elongation factor Tu; 99.7 8.7E-17 1.9E-21 179.3 18.4 152 369-537 79-250 (478)
205 smart00174 RHO Rho (Ras homolo 99.7 6.8E-17 1.5E-21 156.9 15.3 155 374-547 1-170 (174)
206 cd01892 Miro2 Miro2 subfamily. 99.7 4.8E-17 1E-21 157.9 14.1 157 370-547 3-164 (169)
207 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.7 9.3E-17 2E-21 157.8 16.3 157 371-547 5-178 (182)
208 cd04124 RabL2 RabL2 subfamily. 99.7 9.4E-17 2E-21 154.3 16.0 153 165-356 2-158 (161)
209 cd04145 M_R_Ras_like M-Ras/R-R 99.7 9.9E-17 2.1E-21 153.8 16.2 152 164-355 3-163 (164)
210 cd01896 DRG The developmentall 99.7 7.2E-17 1.6E-21 164.7 16.1 156 165-356 2-226 (233)
211 cd04133 Rop_like Rop subfamily 99.7 1E-16 2.2E-21 156.6 16.3 156 372-547 2-171 (176)
212 PTZ00369 Ras-like protein; Pro 99.7 9.5E-17 2.1E-21 158.7 16.3 155 371-548 5-166 (189)
213 cd04125 RabA_like RabA-like su 99.7 1.2E-16 2.5E-21 157.7 16.9 155 372-548 1-161 (188)
214 PRK05124 cysN sulfate adenylyl 99.7 5.9E-17 1.3E-21 181.4 16.3 157 369-541 25-217 (474)
215 cd04139 RalA_RalB RalA/RalB su 99.7 1.5E-16 3.2E-21 152.3 16.9 155 372-548 1-161 (164)
216 cd04110 Rab35 Rab35 subfamily. 99.7 1.1E-16 2.3E-21 159.7 16.5 156 371-548 6-166 (199)
217 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 6.4E-17 1.4E-21 160.9 14.7 165 165-358 2-186 (196)
218 PRK05506 bifunctional sulfate 99.7 3.7E-17 7.9E-22 190.1 15.0 154 370-539 23-211 (632)
219 cd04160 Arfrp1 Arfrp1 subfamil 99.7 4.6E-17 1E-21 156.8 13.3 151 165-353 1-166 (167)
220 cd04138 H_N_K_Ras_like H-Ras/N 99.7 1.5E-16 3.3E-21 151.8 16.7 152 164-355 2-161 (162)
221 PTZ00133 ADP-ribosylation fact 99.7 1.6E-16 3.6E-21 156.1 17.3 152 372-547 18-176 (182)
222 PRK09554 feoB ferrous iron tra 99.7 7.2E-17 1.6E-21 189.1 17.3 160 164-356 4-168 (772)
223 cd04154 Arl2 Arl2 subfamily. 99.7 8.2E-17 1.8E-21 156.6 14.8 149 163-353 14-172 (173)
224 cd04135 Tc10 TC10 subfamily. 99.7 8.7E-17 1.9E-21 156.1 14.9 159 372-547 1-172 (174)
225 PLN03071 GTP-binding nuclear p 99.7 8E-17 1.7E-21 163.1 15.1 156 370-548 12-171 (219)
226 cd04147 Ras_dva Ras-dva subfam 99.7 1.4E-16 3.1E-21 158.7 16.5 155 373-548 1-162 (198)
227 cd00157 Rho Rho (Ras homology) 99.7 5.8E-17 1.3E-21 156.5 13.3 159 372-546 1-170 (171)
228 cd04130 Wrch_1 Wrch-1 subfamil 99.7 1.2E-16 2.6E-21 155.4 15.5 157 372-545 1-170 (173)
229 cd04158 ARD1 ARD1 subfamily. 99.7 1.3E-16 2.9E-21 154.7 15.7 149 373-547 1-159 (169)
230 TIGR00491 aIF-2 translation in 99.7 1.4E-16 3E-21 181.4 18.3 162 370-547 3-214 (590)
231 CHL00189 infB translation init 99.7 7.7E-17 1.7E-21 186.2 16.4 154 161-355 242-409 (742)
232 cd01885 EF2 EF2 (for archaea a 99.7 9.2E-17 2E-21 162.2 15.1 152 372-537 1-200 (222)
233 cd04146 RERG_RasL11_like RERG/ 99.7 1.1E-16 2.4E-21 154.2 14.9 153 373-547 1-162 (165)
234 cd04106 Rab23_lke Rab23-like s 99.7 1.3E-16 2.9E-21 152.7 15.4 151 165-354 2-161 (162)
235 TIGR01393 lepA GTP-binding pro 99.7 1.2E-16 2.7E-21 183.0 17.8 160 371-549 3-180 (595)
236 cd01871 Rac1_like Rac1-like su 99.7 1.5E-16 3.3E-21 155.2 15.9 156 372-546 2-172 (174)
237 TIGR02034 CysN sulfate adenyly 99.7 6.9E-17 1.5E-21 178.0 15.2 153 372-540 1-188 (406)
238 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 1.7E-16 3.7E-21 157.9 16.5 174 372-550 1-185 (196)
239 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 1.5E-16 3.2E-21 153.4 15.5 154 164-356 3-164 (166)
240 cd04117 Rab15 Rab15 subfamily. 99.7 1.7E-16 3.7E-21 152.6 15.8 153 372-546 1-159 (161)
241 PRK15467 ethanolamine utilizat 99.7 7.4E-17 1.6E-21 154.8 13.2 144 165-358 3-149 (158)
242 cd04131 Rnd Rnd subfamily. Th 99.7 2.1E-16 4.6E-21 154.8 16.6 156 372-547 2-174 (178)
243 cd04114 Rab30 Rab30 subfamily. 99.7 1.9E-16 4.1E-21 152.9 16.1 155 371-547 7-167 (169)
244 smart00177 ARF ARF-like small 99.7 2.2E-16 4.8E-21 154.1 16.3 155 371-547 13-172 (175)
245 cd01868 Rab11_like Rab11-like. 99.7 1.8E-16 3.9E-21 152.5 15.4 153 164-355 4-164 (165)
246 PLN03110 Rab GTPase; Provision 99.7 2.1E-16 4.5E-21 159.7 16.5 159 370-549 11-174 (216)
247 smart00178 SAR Sar1p-like memb 99.7 2.3E-16 5E-21 155.3 16.4 150 371-546 17-182 (184)
248 PLN00223 ADP-ribosylation fact 99.7 2.3E-16 4.9E-21 155.0 16.1 151 372-548 18-177 (181)
249 cd04177 RSR1 RSR1 subgroup. R 99.7 2.6E-16 5.7E-21 152.2 16.4 155 372-547 2-162 (168)
250 smart00175 RAB Rab subfamily o 99.7 2.4E-16 5.1E-21 151.1 15.9 151 165-356 2-162 (164)
251 cd01865 Rab3 Rab3 subfamily. 99.7 2.2E-16 4.8E-21 152.3 15.7 154 164-356 2-163 (165)
252 COG0536 Obg Predicted GTPase [ 99.7 1.5E-16 3.3E-21 163.6 15.2 166 373-551 161-335 (369)
253 TIGR00483 EF-1_alpha translati 99.7 1.2E-16 2.5E-21 177.8 15.7 158 369-542 5-200 (426)
254 cd04136 Rap_like Rap-like subf 99.7 2E-16 4.4E-21 151.5 15.2 152 164-355 2-162 (163)
255 cd01870 RhoA_like RhoA-like su 99.7 2.9E-16 6.4E-21 152.6 16.5 157 372-547 2-173 (175)
256 cd01876 YihA_EngB The YihA (En 99.7 4.9E-16 1.1E-20 148.7 17.8 165 373-547 1-169 (170)
257 cd04115 Rab33B_Rab33A Rab33B/R 99.7 4E-16 8.6E-21 151.3 17.2 156 371-547 2-167 (170)
258 TIGR01394 TypA_BipA GTP-bindin 99.7 2.7E-16 5.9E-21 179.7 18.6 159 372-549 2-191 (594)
259 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.7 3E-16 6.5E-21 159.5 16.9 159 371-548 13-187 (232)
260 TIGR00475 selB selenocysteine- 99.7 2.3E-16 5E-21 180.7 17.9 154 165-358 2-168 (581)
261 smart00173 RAS Ras subfamily o 99.7 2.7E-16 5.8E-21 151.0 15.6 152 165-356 2-162 (164)
262 cd04155 Arl3 Arl3 subfamily. 99.7 2.2E-16 4.8E-21 153.1 15.0 152 371-546 14-172 (173)
263 cd01866 Rab2 Rab2 subfamily. 99.7 2.9E-16 6.4E-21 151.9 15.7 152 164-356 5-166 (168)
264 cd01896 DRG The developmentall 99.7 3.1E-16 6.8E-21 160.0 16.7 152 373-547 2-224 (233)
265 cd04123 Rab21 Rab21 subfamily. 99.7 3.9E-16 8.4E-21 149.0 16.3 155 372-547 1-160 (162)
266 cd04119 RJL RJL (RabJ-Like) su 99.7 3.5E-16 7.6E-21 150.2 16.0 152 165-355 2-166 (168)
267 KOG0462 Elongation factor-type 99.7 1.5E-16 3.3E-21 171.0 14.7 161 369-548 58-234 (650)
268 cd04151 Arl1 Arl1 subfamily. 99.7 2.2E-16 4.9E-21 151.0 14.4 147 165-353 1-157 (158)
269 cd04148 RGK RGK subfamily. Th 99.7 3.4E-16 7.4E-21 158.7 16.3 155 372-549 1-163 (221)
270 cd00879 Sar1 Sar1 subfamily. 99.7 2.9E-16 6.3E-21 155.0 15.3 150 371-546 19-188 (190)
271 PRK10218 GTP-binding protein; 99.7 4.2E-16 9.1E-21 178.0 18.8 160 370-548 4-194 (607)
272 cd04149 Arf6 Arf6 subfamily. 99.7 1.9E-16 4.2E-21 153.5 13.8 149 163-353 9-167 (168)
273 cd01860 Rab5_related Rab5-rela 99.7 2.5E-16 5.5E-21 150.9 14.4 153 164-355 2-162 (163)
274 cd00876 Ras Ras family. The R 99.7 5.6E-16 1.2E-20 147.6 16.6 152 373-546 1-158 (160)
275 cd04169 RF3 RF3 subfamily. Pe 99.7 6.7E-16 1.5E-20 160.6 18.5 114 372-500 3-137 (267)
276 cd01875 RhoG RhoG subfamily. 99.7 4.5E-16 9.7E-21 154.2 16.5 159 372-547 4-175 (191)
277 cd01867 Rab8_Rab10_Rab13_like 99.7 3.7E-16 8E-21 151.0 15.4 153 164-355 4-164 (167)
278 cd04175 Rap1 Rap1 subgroup. T 99.7 3.9E-16 8.4E-21 150.1 15.5 152 164-355 2-162 (164)
279 cd01864 Rab19 Rab19 subfamily. 99.7 4.4E-16 9.5E-21 150.0 15.8 152 164-354 4-164 (165)
280 TIGR00157 ribosome small subun 99.7 2.3E-16 5.1E-21 162.0 14.6 143 268-435 32-186 (245)
281 cd04120 Rab12 Rab12 subfamily. 99.7 4.6E-16 9.9E-21 155.3 16.3 153 165-356 2-163 (202)
282 cd04112 Rab26 Rab26 subfamily. 99.7 3.9E-16 8.5E-21 154.5 15.6 155 165-358 2-165 (191)
283 cd01888 eIF2_gamma eIF2-gamma 99.7 3.4E-16 7.3E-21 156.6 15.3 154 165-357 2-200 (203)
284 cd04158 ARD1 ARD1 subfamily. 99.7 3.2E-16 7E-21 151.9 14.5 151 165-357 1-162 (169)
285 cd04144 Ras2 Ras2 subfamily. 99.7 4E-16 8.7E-21 154.3 15.4 152 165-356 1-163 (190)
286 cd04157 Arl6 Arl6 subfamily. 99.7 3.5E-16 7.5E-21 149.7 14.5 147 165-353 1-161 (162)
287 cd04161 Arl2l1_Arl13_like Arl2 99.7 2.3E-16 5.1E-21 152.7 13.3 152 373-546 1-166 (167)
288 cd04109 Rab28 Rab28 subfamily. 99.7 5.4E-16 1.2E-20 156.6 16.2 154 165-357 2-167 (215)
289 cd04156 ARLTS1 ARLTS1 subfamil 99.7 3.2E-16 6.8E-21 149.9 13.8 147 165-353 1-159 (160)
290 cd04140 ARHI_like ARHI subfami 99.7 5.5E-16 1.2E-20 149.5 15.3 151 164-354 2-163 (165)
291 cd04167 Snu114p Snu114p subfam 99.7 3.6E-16 7.7E-21 157.7 14.4 153 372-538 1-192 (213)
292 TIGR01394 TypA_BipA GTP-bindin 99.7 1.9E-15 4E-20 172.9 21.8 156 164-359 2-194 (594)
293 PTZ00141 elongation factor 1- 99.7 3.7E-16 7.9E-21 173.7 15.5 155 370-539 6-203 (446)
294 cd04137 RheB Rheb (Ras Homolog 99.7 8.5E-16 1.8E-20 150.2 16.4 154 372-548 2-162 (180)
295 cd04127 Rab27A Rab27a subfamil 99.7 6.3E-16 1.4E-20 151.1 15.4 153 164-355 5-176 (180)
296 cd00880 Era_like Era (E. coli 99.7 8.8E-16 1.9E-20 144.7 15.9 154 168-354 1-162 (163)
297 cd04176 Rap2 Rap2 subgroup. T 99.7 6.4E-16 1.4E-20 148.3 15.1 152 164-355 2-162 (163)
298 cd04159 Arl10_like Arl10-like 99.7 9.5E-16 2.1E-20 145.2 16.0 152 374-546 2-158 (159)
299 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 5.6E-16 1.2E-20 151.0 14.5 148 164-353 16-173 (174)
300 cd00877 Ran Ran (Ras-related n 99.7 5.2E-16 1.1E-20 150.1 14.1 153 165-356 2-159 (166)
301 PTZ00369 Ras-like protein; Pro 99.7 8E-16 1.7E-20 152.1 15.6 156 163-358 5-169 (189)
302 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.7 8.4E-16 1.8E-20 149.6 15.6 154 164-357 3-165 (172)
303 PRK12739 elongation factor G; 99.7 7.9E-16 1.7E-20 180.5 18.1 116 370-500 7-139 (691)
304 KOG0087 GTPase Rab11/YPT3, sma 99.7 3.5E-16 7.5E-21 150.5 12.3 158 369-547 12-174 (222)
305 smart00176 RAN Ran (Ras-relate 99.7 6E-16 1.3E-20 154.2 14.4 149 377-548 1-153 (200)
306 PRK12317 elongation factor 1-a 99.7 2.6E-16 5.6E-21 175.0 13.2 144 164-346 7-195 (425)
307 cd01862 Rab7 Rab7 subfamily. 99.7 1.1E-15 2.5E-20 147.6 16.1 153 165-356 2-167 (172)
308 cd04103 Centaurin_gamma Centau 99.7 1.3E-15 2.8E-20 146.2 16.2 149 372-546 1-156 (158)
309 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 5.7E-16 1.2E-20 152.3 14.1 154 164-357 4-171 (183)
310 PLN03108 Rab family protein; P 99.7 1.3E-15 2.8E-20 153.2 17.0 155 371-547 6-166 (210)
311 cd04110 Rab35 Rab35 subfamily. 99.7 1E-15 2.3E-20 152.6 16.1 155 163-356 6-167 (199)
312 PRK13796 GTPase YqeH; Provisio 99.7 5.1E-16 1.1E-20 168.5 15.0 145 266-432 62-222 (365)
313 cd04122 Rab14 Rab14 subfamily. 99.7 9.5E-16 2.1E-20 147.9 15.3 150 164-355 3-163 (166)
314 COG1084 Predicted GTPase [Gene 99.7 2.1E-15 4.5E-20 154.7 18.4 163 370-547 167-334 (346)
315 cd04113 Rab4 Rab4 subfamily. 99.7 9.9E-16 2.1E-20 146.7 15.3 151 165-354 2-160 (161)
316 cd04170 EF-G_bact Elongation f 99.7 1.4E-15 3.1E-20 158.8 17.8 113 373-500 1-130 (268)
317 cd04121 Rab40 Rab40 subfamily. 99.7 1.3E-15 2.8E-20 150.5 16.4 155 164-357 7-168 (189)
318 cd04150 Arf1_5_like Arf1-Arf5- 99.7 8.1E-16 1.8E-20 147.7 14.6 147 165-353 2-158 (159)
319 cd04139 RalA_RalB RalA/RalB su 99.7 1.2E-15 2.7E-20 145.9 15.8 152 165-356 2-162 (164)
320 PRK05433 GTP-binding protein L 99.7 1.2E-15 2.6E-20 175.1 18.4 162 370-550 6-185 (600)
321 cd04101 RabL4 RabL4 (Rab-like4 99.7 1.3E-15 2.9E-20 146.2 15.8 153 165-355 2-163 (164)
322 smart00178 SAR Sar1p-like memb 99.7 7.9E-16 1.7E-20 151.5 14.5 150 163-354 17-183 (184)
323 PRK04004 translation initiatio 99.7 1.8E-15 4E-20 172.9 19.4 163 369-547 4-216 (586)
324 PLN03118 Rab family protein; P 99.7 9.6E-16 2.1E-20 154.2 15.2 155 163-357 14-178 (211)
325 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 1.4E-15 3.1E-20 151.8 16.2 154 165-357 2-169 (201)
326 PRK00007 elongation factor G; 99.7 6.6E-16 1.4E-20 181.1 15.9 146 370-534 9-171 (693)
327 CHL00071 tufA elongation facto 99.7 1.2E-15 2.7E-20 168.4 17.2 153 164-356 13-211 (409)
328 TIGR00484 EF-G translation elo 99.7 1.2E-15 2.7E-20 179.0 18.2 116 370-500 9-141 (689)
329 COG1163 DRG Predicted GTPase [ 99.7 7.9E-16 1.7E-20 157.0 14.0 156 370-547 62-287 (365)
330 smart00177 ARF ARF-like small 99.7 1.3E-15 2.8E-20 148.7 15.0 151 163-355 13-173 (175)
331 TIGR01393 lepA GTP-binding pro 99.7 1.2E-15 2.7E-20 174.8 17.2 157 163-359 3-183 (595)
332 TIGR00231 small_GTP small GTP- 99.7 2.9E-16 6.4E-21 147.9 10.1 154 164-352 2-160 (161)
333 KOG0410 Predicted GTP binding 99.7 5E-16 1.1E-20 157.6 12.2 190 128-357 144-342 (410)
334 cd04118 Rab24 Rab24 subfamily. 99.7 1.6E-15 3.4E-20 150.2 15.7 153 165-356 2-166 (193)
335 cd01874 Cdc42 Cdc42 subfamily. 99.7 1.3E-15 2.8E-20 148.8 14.8 151 164-354 2-173 (175)
336 cd01863 Rab18 Rab18 subfamily. 99.7 1.4E-15 3E-20 145.6 14.8 151 165-354 2-160 (161)
337 PRK10512 selenocysteinyl-tRNA- 99.7 1.3E-15 2.8E-20 175.0 17.2 153 165-357 2-167 (614)
338 PRK04004 translation initiatio 99.7 3.2E-15 6.9E-20 171.0 20.2 154 161-356 4-218 (586)
339 smart00174 RHO Rho (Ras homolo 99.7 1.2E-15 2.6E-20 148.2 14.2 150 166-355 1-171 (174)
340 PRK12288 GTPase RsgA; Reviewed 99.7 1.7E-15 3.7E-20 162.5 16.6 142 270-435 118-272 (347)
341 COG5256 TEF1 Translation elong 99.7 9.5E-16 2.1E-20 161.6 14.2 188 370-585 6-235 (428)
342 cd00154 Rab Rab family. Rab G 99.7 1.3E-15 2.9E-20 144.0 14.0 149 165-352 2-158 (159)
343 TIGR02528 EutP ethanolamine ut 99.7 7.7E-16 1.7E-20 144.5 12.3 136 165-352 2-141 (142)
344 cd00879 Sar1 Sar1 subfamily. 99.7 1.4E-15 3E-20 150.1 14.7 151 163-355 19-190 (190)
345 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.7 1.9E-15 4.2E-20 152.8 15.8 160 372-548 2-175 (222)
346 cd00876 Ras Ras family. The R 99.7 2.6E-15 5.5E-20 143.0 15.9 150 165-354 1-159 (160)
347 cd04132 Rho4_like Rho4-like su 99.7 1.9E-15 4.1E-20 148.8 15.4 154 165-358 2-169 (187)
348 TIGR00437 feoB ferrous iron tr 99.7 1.2E-15 2.7E-20 174.9 16.0 151 170-355 1-154 (591)
349 KOG0098 GTPase Rab2, small G p 99.7 9.3E-16 2E-20 144.3 12.2 156 371-547 6-166 (216)
350 cd04123 Rab21 Rab21 subfamily. 99.6 2.6E-15 5.7E-20 143.2 15.6 152 165-355 2-161 (162)
351 cd04162 Arl9_Arfrp2_like Arl9/ 99.6 1.6E-15 3.4E-20 146.4 14.1 152 373-545 1-162 (164)
352 COG0536 Obg Predicted GTPase [ 99.6 1.2E-15 2.6E-20 157.0 13.8 164 163-358 159-335 (369)
353 cd01873 RhoBTB RhoBTB subfamil 99.6 1.2E-15 2.6E-20 151.6 13.6 155 372-546 3-193 (195)
354 cd04104 p47_IIGP_like p47 (47- 99.6 3.1E-15 6.7E-20 149.0 16.5 169 372-553 2-188 (197)
355 TIGR03680 eif2g_arch translati 99.6 1.8E-15 4E-20 166.9 16.4 161 371-548 4-195 (406)
356 cd04146 RERG_RasL11_like RERG/ 99.6 1.6E-15 3.4E-20 146.1 14.0 152 165-355 1-163 (165)
357 cd04147 Ras_dva Ras-dva subfam 99.6 1.6E-15 3.5E-20 151.0 14.4 152 165-356 1-163 (198)
358 cd04168 TetM_like Tet(M)-like 99.6 2.6E-15 5.5E-20 153.6 16.1 113 165-317 1-130 (237)
359 PLN00223 ADP-ribosylation fact 99.6 2.3E-15 5.1E-20 147.8 15.2 149 164-356 18-178 (181)
360 cd04114 Rab30 Rab30 subfamily. 99.6 2.3E-15 4.9E-20 145.3 14.9 153 163-354 7-167 (169)
361 cd01893 Miro1 Miro1 subfamily. 99.6 2.1E-15 4.4E-20 145.7 14.5 150 165-355 2-163 (166)
362 cd04108 Rab36_Rab34 Rab34/Rab3 99.6 2.4E-15 5.1E-20 146.2 14.9 154 165-357 2-166 (170)
363 cd04143 Rhes_like Rhes_like su 99.6 3.1E-15 6.8E-20 153.9 16.5 152 165-356 2-171 (247)
364 PRK05433 GTP-binding protein L 99.6 3.9E-15 8.5E-20 170.8 19.1 157 163-359 7-187 (600)
365 PLN03110 Rab GTPase; Provision 99.6 3.2E-15 7E-20 151.1 16.2 157 163-358 12-176 (216)
366 cd04117 Rab15 Rab15 subfamily. 99.6 4.2E-15 9.1E-20 142.9 16.2 151 165-354 2-160 (161)
367 PRK10218 GTP-binding protein; 99.6 2.9E-15 6.3E-20 171.1 17.6 157 163-359 5-198 (607)
368 cd00878 Arf_Arl Arf (ADP-ribos 99.6 2.4E-15 5.3E-20 143.5 14.5 147 165-353 1-157 (158)
369 cd01892 Miro2 Miro2 subfamily. 99.6 3.2E-15 7E-20 145.0 15.3 153 163-356 4-166 (169)
370 cd04125 RabA_like RabA-like su 99.6 4.3E-15 9.4E-20 146.5 16.3 155 164-357 1-163 (188)
371 cd01886 EF-G Elongation factor 99.6 2E-15 4.3E-20 157.2 14.1 114 165-318 1-131 (270)
372 PLN03071 GTP-binding nuclear p 99.6 2.3E-15 5E-20 152.4 14.2 155 163-357 13-173 (219)
373 PRK12736 elongation factor Tu; 99.6 3.4E-15 7.4E-20 164.1 16.7 154 164-357 13-202 (394)
374 cd04135 Tc10 TC10 subfamily. 99.6 2.9E-15 6.3E-20 145.4 14.4 150 165-354 2-172 (174)
375 cd01899 Ygr210 Ygr210 subfamil 99.6 3.4E-15 7.4E-20 158.3 15.9 161 166-358 1-271 (318)
376 cd01883 EF1_alpha Eukaryotic e 99.6 1.5E-15 3.3E-20 153.7 12.6 142 165-345 1-194 (219)
377 cd04115 Rab33B_Rab33A Rab33B/R 99.6 5.1E-15 1.1E-19 143.5 15.8 155 164-356 3-169 (170)
378 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.6 5.6E-15 1.2E-19 140.2 15.4 158 164-360 23-189 (221)
379 PTZ00133 ADP-ribosylation fact 99.6 3E-15 6.6E-20 147.1 14.1 152 164-357 18-179 (182)
380 PRK04000 translation initiatio 99.6 4.4E-15 9.5E-20 163.8 17.0 163 369-548 7-200 (411)
381 cd04133 Rop_like Rop subfamily 99.6 6.1E-15 1.3E-19 144.1 15.9 153 164-356 2-173 (176)
382 PRK00741 prfC peptide chain re 99.6 8.2E-15 1.8E-19 165.6 19.2 116 370-500 9-145 (526)
383 KOG1145 Mitochondrial translat 99.6 3E-15 6.5E-20 161.1 14.7 152 161-353 151-313 (683)
384 PRK12735 elongation factor Tu; 99.6 4.7E-15 1E-19 163.1 16.8 154 164-357 13-204 (396)
385 cd01876 YihA_EngB The YihA (En 99.6 1.1E-14 2.3E-19 139.4 17.3 160 166-355 2-170 (170)
386 COG0532 InfB Translation initi 99.6 4.1E-15 8.8E-20 161.9 15.9 163 370-551 4-172 (509)
387 cd01871 Rac1_like Rac1-like su 99.6 4.9E-15 1.1E-19 144.5 15.0 151 164-354 2-173 (174)
388 cd00157 Rho Rho (Ras homology) 99.6 2.6E-15 5.6E-20 145.0 13.0 149 165-353 2-170 (171)
389 cd04134 Rho3 Rho3 subfamily. 99.6 4E-15 8.7E-20 147.1 14.6 153 165-357 2-175 (189)
390 KOG0095 GTPase Rab30, small G 99.6 2.4E-15 5.2E-20 135.8 11.7 156 370-546 6-166 (213)
391 cd04128 Spg1 Spg1p. Spg1p (se 99.6 5.9E-15 1.3E-19 145.1 15.4 153 165-357 2-167 (182)
392 cd04130 Wrch_1 Wrch-1 subfamil 99.6 4.1E-15 9E-20 144.6 14.1 148 165-352 2-170 (173)
393 cd04129 Rho2 Rho2 subfamily. 99.6 5.3E-15 1.1E-19 145.9 15.1 158 372-547 2-171 (187)
394 cd04126 Rab20 Rab20 subfamily. 99.6 5.5E-15 1.2E-19 149.3 15.3 151 165-357 2-191 (220)
395 PLN03127 Elongation factor Tu; 99.6 1E-14 2.2E-19 162.0 18.7 154 164-357 62-253 (447)
396 COG1161 Predicted GTPases [Gen 99.6 2.8E-15 6.1E-20 159.8 13.7 163 263-433 25-190 (322)
397 KOG1145 Mitochondrial translat 99.6 6.6E-15 1.4E-19 158.4 16.3 162 368-548 150-315 (683)
398 cd04159 Arl10_like Arl10-like 99.6 6.1E-15 1.3E-19 139.6 14.3 147 166-353 2-158 (159)
399 cd04148 RGK RGK subfamily. Th 99.6 6.4E-15 1.4E-19 149.4 15.1 151 165-356 2-163 (221)
400 cd04155 Arl3 Arl3 subfamily. 99.6 6.9E-15 1.5E-19 142.6 14.6 149 163-353 14-172 (173)
401 cd04137 RheB Rheb (Ras Homolog 99.6 9.3E-15 2E-19 142.8 15.4 155 164-358 2-165 (180)
402 cd04116 Rab9 Rab9 subfamily. 99.6 1.3E-14 2.8E-19 140.4 16.1 153 163-354 5-169 (170)
403 PRK00098 GTPase RsgA; Reviewed 99.6 3.2E-15 7E-20 158.1 12.7 142 269-434 77-230 (298)
404 KOG0079 GTP-binding protein H- 99.6 3.1E-15 6.8E-20 135.1 10.5 159 371-551 8-171 (198)
405 cd01875 RhoG RhoG subfamily. 99.6 1.1E-14 2.5E-19 144.2 15.5 154 164-357 4-178 (191)
406 PLN03108 Rab family protein; P 99.6 1.2E-14 2.6E-19 146.3 15.8 154 164-356 7-168 (210)
407 COG3596 Predicted GTPase [Gene 99.6 9.2E-15 2E-19 146.7 14.7 184 369-562 37-235 (296)
408 cd04161 Arl2l1_Arl13_like Arl2 99.6 7.1E-15 1.5E-19 142.3 13.6 147 165-353 1-166 (167)
409 cd04131 Rnd Rnd subfamily. Th 99.6 1.1E-14 2.3E-19 142.7 14.9 150 164-353 2-173 (178)
410 cd04165 GTPBP1_like GTPBP1-lik 99.6 1.5E-14 3.2E-19 146.7 16.1 149 165-353 1-220 (224)
411 cd01870 RhoA_like RhoA-like su 99.6 1E-14 2.2E-19 141.7 14.4 151 164-354 2-173 (175)
412 cd04111 Rab39 Rab39 subfamily. 99.6 7.3E-15 1.6E-19 147.9 13.8 156 164-358 3-168 (211)
413 cd04177 RSR1 RSR1 subgroup. R 99.6 1.6E-14 3.5E-19 139.7 15.6 152 164-355 2-163 (168)
414 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.6 1.8E-14 3.9E-19 146.5 16.6 153 164-356 14-188 (232)
415 KOG0462 Elongation factor-type 99.6 4.5E-15 9.8E-20 159.9 12.6 161 161-361 58-240 (650)
416 KOG0092 GTPase Rab5/YPT51 and 99.6 7.3E-15 1.6E-19 139.6 12.5 157 164-359 6-170 (200)
417 cd04162 Arl9_Arfrp2_like Arl9/ 99.6 7.8E-15 1.7E-19 141.6 13.0 145 166-352 2-162 (164)
418 PRK00049 elongation factor Tu; 99.6 1.2E-14 2.7E-19 159.7 16.2 153 164-356 13-203 (396)
419 KOG0080 GTPase Rab18, small G 99.6 4.7E-15 1E-19 135.8 10.6 154 371-546 11-171 (209)
420 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.6 1.7E-14 3.7E-19 141.7 15.5 152 163-354 5-178 (182)
421 TIGR00485 EF-Tu translation el 99.6 2.4E-14 5.1E-19 157.6 18.2 154 163-356 12-201 (394)
422 PRK09602 translation-associate 99.6 1.5E-14 3.2E-19 158.0 16.1 161 164-357 2-272 (396)
423 TIGR03680 eif2g_arch translati 99.6 1.3E-14 2.9E-19 160.0 15.8 155 164-357 5-197 (406)
424 PF00071 Ras: Ras family; Int 99.6 1.6E-14 3.5E-19 138.4 14.4 153 373-548 1-160 (162)
425 PLN00043 elongation factor 1-a 99.6 1.1E-14 2.5E-19 161.7 15.3 156 369-539 5-203 (447)
426 cd01882 BMS1 Bms1. Bms1 is an 99.6 3.4E-14 7.3E-19 144.4 17.1 144 369-537 37-184 (225)
427 PRK05506 bifunctional sulfate 99.6 6.9E-15 1.5E-19 171.2 13.7 144 164-346 25-211 (632)
428 cd00882 Ras_like_GTPase Ras-li 99.6 1.6E-14 3.4E-19 134.4 13.5 150 376-545 1-156 (157)
429 TIGR02034 CysN sulfate adenyly 99.6 8.9E-15 1.9E-19 161.4 13.4 143 165-346 2-187 (406)
430 cd01899 Ygr210 Ygr210 subfamil 99.6 4.3E-14 9.2E-19 150.0 17.8 88 374-469 1-111 (318)
431 PF10662 PduV-EutP: Ethanolami 99.6 1.4E-14 3.1E-19 134.2 12.4 140 372-545 2-142 (143)
432 cd01854 YjeQ_engC YjeQ/EngC. 99.6 7.5E-15 1.6E-19 154.5 11.9 141 270-434 76-227 (287)
433 KOG0084 GTPase Rab1/YPT1, smal 99.6 2.3E-14 5E-19 136.7 14.0 155 163-358 9-174 (205)
434 KOG0078 GTP-binding protein SE 99.6 3.7E-14 8E-19 137.3 15.5 156 163-357 12-175 (207)
435 PF00025 Arf: ADP-ribosylation 99.6 2.6E-14 5.7E-19 139.5 14.7 156 370-547 13-174 (175)
436 KOG1424 Predicted GTP-binding 99.6 8.8E-15 1.9E-19 157.1 12.2 165 264-432 166-371 (562)
437 PRK12739 elongation factor G; 99.6 2.7E-14 5.8E-19 167.7 17.4 116 162-317 7-139 (691)
438 TIGR00503 prfC peptide chain r 99.6 3.7E-14 8E-19 160.3 17.9 116 369-499 9-145 (527)
439 PRK05124 cysN sulfate adenylyl 99.6 1.7E-14 3.6E-19 161.7 15.0 146 163-347 27-216 (474)
440 PTZ00327 eukaryotic translatio 99.6 3.3E-14 7.1E-19 157.7 16.9 162 370-548 33-232 (460)
441 PLN03126 Elongation factor Tu; 99.6 3.6E-14 7.8E-19 158.4 17.2 140 163-342 81-248 (478)
442 PRK04000 translation initiatio 99.6 3E-14 6.5E-19 157.2 16.0 155 164-357 10-202 (411)
443 smart00176 RAN Ran (Ras-relate 99.6 3.4E-14 7.3E-19 141.6 14.7 150 169-357 1-155 (200)
444 PRK13351 elongation factor G; 99.6 4.4E-14 9.6E-19 166.2 18.1 117 370-501 7-140 (687)
445 KOG0091 GTPase Rab39, small G 99.6 2.3E-14 4.9E-19 131.8 11.1 155 372-548 9-172 (213)
446 COG3596 Predicted GTPase [Gene 99.6 1.9E-14 4.1E-19 144.5 11.4 163 164-357 40-223 (296)
447 TIGR00483 EF-1_alpha translati 99.6 4E-14 8.6E-19 157.6 15.1 145 163-346 7-197 (426)
448 cd04169 RF3 RF3 subfamily. Pe 99.5 9.6E-14 2.1E-18 144.4 16.3 116 164-319 3-139 (267)
449 PTZ00258 GTP-binding protein; 99.5 1.4E-13 3E-18 148.7 18.1 92 369-468 19-126 (390)
450 COG0481 LepA Membrane GTPase L 99.5 2.5E-14 5.4E-19 151.8 11.8 159 370-547 8-184 (603)
451 cd01873 RhoBTB RhoBTB subfamil 99.5 6.7E-14 1.4E-18 139.1 14.1 150 164-353 3-193 (195)
452 PRK09602 translation-associate 99.5 1E-13 2.2E-18 151.4 16.9 89 372-468 2-113 (396)
453 PRK00007 elongation factor G; 99.5 2.7E-14 5.8E-19 167.6 13.0 140 162-341 9-171 (693)
454 KOG0083 GTPase Rab26/Rab37, sm 99.5 6E-15 1.3E-19 130.9 5.3 156 375-551 1-162 (192)
455 cd04129 Rho2 Rho2 subfamily. 99.5 1.2E-13 2.6E-18 136.2 15.1 153 165-357 3-174 (187)
456 KOG0093 GTPase Rab3, small G p 99.5 8.5E-14 1.8E-18 125.8 12.4 157 371-548 21-182 (193)
457 PTZ00132 GTP-binding nuclear p 99.5 1.8E-13 3.8E-18 138.2 16.4 156 370-548 8-167 (215)
458 COG0050 TufB GTPases - transla 99.5 4.5E-14 9.8E-19 141.7 11.7 296 368-690 9-359 (394)
459 TIGR02836 spore_IV_A stage IV 99.5 7.7E-14 1.7E-18 147.9 14.1 166 368-549 14-234 (492)
460 cd04103 Centaurin_gamma Centau 99.5 1E-13 2.3E-18 133.0 13.9 144 165-354 2-157 (158)
461 KOG0086 GTPase Rab4, small G p 99.5 1.2E-13 2.6E-18 125.5 13.0 157 370-547 8-169 (214)
462 cd04167 Snu114p Snu114p subfam 99.5 1.1E-13 2.5E-18 139.4 14.5 112 165-316 2-136 (213)
463 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.5 1.7E-13 3.8E-18 138.6 15.7 150 165-354 3-174 (222)
464 KOG1490 GTP-binding protein CR 99.5 1.3E-13 2.8E-18 147.3 15.2 195 370-574 167-369 (620)
465 COG0481 LepA Membrane GTPase L 99.5 1.9E-13 4E-18 145.3 16.2 158 163-360 9-190 (603)
466 COG2229 Predicted GTPase [Gene 99.5 1.9E-13 4.1E-18 129.5 14.6 154 371-545 10-174 (187)
467 PTZ00258 GTP-binding protein; 99.5 1.1E-13 2.3E-18 149.6 14.6 89 163-283 21-126 (390)
468 TIGR00484 EF-G translation elo 99.5 7.7E-14 1.7E-18 163.9 14.7 140 162-341 9-171 (689)
469 PF10662 PduV-EutP: Ethanolami 99.5 1.4E-13 3E-18 127.7 12.3 137 164-352 2-142 (143)
470 cd00882 Ras_like_GTPase Ras-li 99.5 1.2E-13 2.7E-18 128.3 12.3 146 168-352 1-156 (157)
471 PF00071 Ras: Ras family; Int 99.5 1.8E-13 3.9E-18 131.1 13.5 152 165-355 1-160 (162)
472 PRK00741 prfC peptide chain re 99.5 2.2E-13 4.8E-18 154.0 16.4 115 163-317 10-145 (526)
473 PRK12740 elongation factor G; 99.5 2.5E-13 5.3E-18 159.6 17.2 109 377-500 1-126 (668)
474 cd04170 EF-G_bact Elongation f 99.5 6.3E-14 1.4E-18 146.4 10.8 144 165-348 1-165 (268)
475 PTZ00141 elongation factor 1- 99.5 1.3E-13 2.8E-18 153.4 13.7 143 164-346 8-203 (446)
476 PRK09601 GTP-binding protein Y 99.5 6.9E-13 1.5E-17 141.8 18.4 89 372-468 3-107 (364)
477 cd01853 Toc34_like Toc34-like 99.5 9.9E-13 2.1E-17 135.1 18.9 130 369-503 29-166 (249)
478 COG1217 TypA Predicted membran 99.5 4.9E-13 1.1E-17 141.7 16.6 147 370-535 4-171 (603)
479 PTZ00327 eukaryotic translatio 99.5 2.8E-13 6E-18 150.4 15.2 157 163-358 34-235 (460)
480 KOG0098 GTPase Rab2, small G p 99.5 3.5E-13 7.5E-18 127.1 13.4 151 164-355 7-167 (216)
481 PF04548 AIG1: AIG1 family; I 99.5 2.1E-13 4.5E-18 137.4 12.6 167 165-359 2-189 (212)
482 PLN00116 translation elongatio 99.5 2.1E-13 4.6E-18 162.8 14.7 117 369-499 17-163 (843)
483 PF00025 Arf: ADP-ribosylation 99.5 1.7E-13 3.6E-18 133.9 11.4 149 164-354 15-174 (175)
484 KOG2484 GTPase [General functi 99.5 1.9E-13 4.2E-18 142.9 12.4 162 263-432 137-309 (435)
485 COG1217 TypA Predicted membran 99.5 1.1E-12 2.3E-17 139.2 17.4 157 163-359 5-198 (603)
486 cd04104 p47_IIGP_like p47 (47- 99.5 3.2E-13 7E-18 134.4 12.9 157 164-358 2-186 (197)
487 TIGR00503 prfC peptide chain r 99.5 7.8E-13 1.7E-17 149.6 16.9 114 163-316 11-145 (527)
488 PTZ00416 elongation factor 2; 99.5 4.4E-13 9.6E-18 159.8 15.6 154 369-536 17-213 (836)
489 KOG1707 Predicted Ras related/ 99.5 1.4E-12 3.1E-17 142.2 17.9 155 369-550 423-584 (625)
490 cd01885 EF2 EF2 (for archaea a 99.5 3.6E-13 7.7E-18 136.1 12.3 112 165-316 2-138 (222)
491 cd04102 RabL3 RabL3 (Rab-like3 99.5 6.1E-13 1.3E-17 132.7 13.7 149 372-536 1-177 (202)
492 PRK09601 GTP-binding protein Y 99.5 7.1E-13 1.5E-17 141.7 15.0 88 164-283 3-107 (364)
493 KOG0088 GTPase Rab21, small G 99.5 1.6E-13 3.6E-18 125.3 8.6 157 370-547 12-173 (218)
494 COG2895 CysN GTPases - Sulfate 99.5 3.2E-13 6.9E-18 139.0 11.7 153 370-538 5-192 (431)
495 KOG0073 GTP-binding ADP-ribosy 99.5 1.5E-12 3.2E-17 120.4 14.7 153 371-546 16-175 (185)
496 PRK13351 elongation factor G; 99.5 6.7E-13 1.4E-17 156.3 15.6 116 162-317 7-139 (687)
497 KOG1490 GTP-binding protein CR 99.4 2.5E-13 5.3E-18 145.2 10.3 165 160-355 165-340 (620)
498 COG1162 Predicted GTPases [Gen 99.4 7.6E-13 1.6E-17 136.4 13.5 141 271-435 78-231 (301)
499 PTZ00132 GTP-binding nuclear p 99.4 2.2E-12 4.8E-17 130.1 16.5 155 163-356 9-168 (215)
500 cd01900 YchF YchF subfamily. 99.4 1.1E-12 2.4E-17 136.0 14.3 87 374-468 1-103 (274)
No 1
>COG1160 Predicted GTPases [General function prediction only]
Probab=100.00 E-value=1.1e-95 Score=773.53 Aligned_cols=439 Identities=50% Similarity=0.797 Sum_probs=404.4
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhcccC
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (693)
|.|||||+||||||||||+|+|++.++|+++||+|||+.++...|.++.|.+|||+|+.....
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~----------------- 66 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDE----------------- 66 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCc-----------------
Confidence 789999999999999999999999999999999999999999999999999999999986221
Q ss_pred CCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCccchhhhH
Q 005504 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQV 323 (693)
Q Consensus 244 ~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~~~~~ 323 (693)
..+...|..|+..++.+||++|||||++.|++++|..++++|++ .++|+|+|+||+|.... ....
T Consensus 67 ------------~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~--~~kpviLvvNK~D~~~~-e~~~ 131 (444)
T COG1160 67 ------------DELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRR--SKKPVILVVNKIDNLKA-EELA 131 (444)
T ss_pred ------------hHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh--cCCCEEEEEEcccCchh-hhhH
Confidence 12456688999999999999999999999999999999999996 58999999999999854 3567
Q ss_pred HHHHhcCC-CCccccccCCCCHHHHHHHHHhhcccccCccchhhhccCCcEEEeecCCCCChhhHHHHHhcCCCceecCC
Q 005504 324 SEFWSLGF-SPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPI 402 (693)
Q Consensus 324 ~~~~~~g~-~~v~iSA~~g~gi~~Ll~~i~~~l~~~~~~~~~~~~~~~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~ 402 (693)
.+||.+|+ .+++|||.||.|+++|++.+.+.++ ..... ........++||++|+||+|||||+|+|+|++++++++.
T Consensus 132 ~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~-~~e~~-~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~ 209 (444)
T COG1160 132 YEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLP-PDEEE-EEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDI 209 (444)
T ss_pred HHHHhcCCCCceEeehhhccCHHHHHHHHHhhcC-Ccccc-cccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCC
Confidence 88999999 6999999999999999999999986 22111 111113579999999999999999999999999999999
Q ss_pred CCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHH
Q 005504 403 SGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERI 482 (693)
Q Consensus 403 ~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l 482 (693)
+|||||+++..+.. +++.|.++||||+++++++. +..|++++.++++++..||+|++|+|+++++++||++++.++
T Consensus 210 aGTTRD~I~~~~e~-~~~~~~liDTAGiRrk~ki~---e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i 285 (444)
T COG1160 210 AGTTRDSIDIEFER-DGRKYVLIDTAGIRRKGKIT---ESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLI 285 (444)
T ss_pred CCccccceeeeEEE-CCeEEEEEECCCCCcccccc---cceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHH
Confidence 99999999999995 89999999999999999987 578999999999999999999999999999999999999999
Q ss_pred HHhCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcEEEeccccCCCHHHHHHHHHHHHHHhhccCCchhHHH
Q 005504 483 EQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVDKERSRRLSTATINQ 562 (693)
Q Consensus 483 ~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~piv~iSA~~g~gv~~L~~~i~~~~~~~~~~i~t~~ln~ 562 (693)
.+.|+++|+|+||||+++. .....+++.++++..|.++.++|++++||++|.|+++|++++.+++.+|.++++|+.||+
T Consensus 286 ~~~g~~~vIvvNKWDl~~~-~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ri~Ts~LN~ 364 (444)
T COG1160 286 EEAGRGIVIVVNKWDLVEE-DEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYECATRRISTSLLNR 364 (444)
T ss_pred HHcCCCeEEEEEccccCCc-hhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHHhccccCHHHHHH
Confidence 9999999999999999875 335567788899999999999999999999999999999999999999999999999999
Q ss_pred HHHhHhhccCCCCCCCCcceeEEEEEecccchhhhhhhccCCCCcchhhhhhhhccCCCCEEEEEeCCCCCCChHHHHHH
Q 005504 563 VVQEAVAFKSPPRTRGGRRGRVYYCTQLLLGIFVRSAFRYGALGPLHIKYDLLQAAVRPPTFVFFVNDAKLFPETYRRYM 642 (693)
Q Consensus 563 ~l~~~~~~~~~p~~~~~~~~k~~y~~q~~~~~~~r~~~~~~~~~~~~~~~~~l~~~~~pp~~v~~~n~~~~~~~~y~~~l 642 (693)
||+.++..+||| ..+|+++|++|+|| +.++||+|++|+|+++.++++|+|||
T Consensus 365 ~l~~a~~~~pP~-~~~G~r~ki~Ya~q---------------------------~~~~PP~fvlf~N~~~~~~~sY~RyL 416 (444)
T COG1160 365 VLEDAVAKHPPP-VRYGRRLKIKYATQ---------------------------VSTNPPTFVLFGNRPKALHFSYKRYL 416 (444)
T ss_pred HHHHHHHhCCCC-ccCCceEEEEEEec---------------------------CCCCCCEEEEEecchhhCchHHHHHH
Confidence 999999999555 56799999999999 99999999999999999999999999
Q ss_pred HHHHhhhcCCCCccEEEEEeecCcccc
Q 005504 643 EKQLRADAGFSGTPIRLLWRSRRKMEM 669 (693)
Q Consensus 643 ~~~~r~~~~~~g~pi~i~~~~~~~~~~ 669 (693)
+|+||+.|+|.||||+|.||.+.+++.
T Consensus 417 ~n~~R~~f~~~g~Pi~l~~k~~~~~~~ 443 (444)
T COG1160 417 ENRLRKAFGFEGTPIRLEFKKKKNPYA 443 (444)
T ss_pred HHHHHHHcCCCCCcEEEEEecCCCccC
Confidence 999999999999999999999988764
No 2
>PRK03003 GTP-binding protein Der; Reviewed
Probab=100.00 E-value=6.8e-73 Score=633.84 Aligned_cols=432 Identities=40% Similarity=0.676 Sum_probs=370.6
Q ss_pred CCeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005504 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (693)
Q Consensus 163 ~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (693)
+|+|+|+|+||||||||+|+|++.+.+.+.+.+|+|++.......+++..+.+|||||+.... .
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~---~------------- 101 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDA---K------------- 101 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcc---h-------------
Confidence 579999999999999999999998878889999999999999999999999999999986311 1
Q ss_pred CCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCccchhhh
Q 005504 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ 322 (693)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~~~~ 322 (693)
.+...+..++..++..||++|||+|++.+.+..+..+.+++++ .++|+++|+||+|+.... ..
T Consensus 102 --------------~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~--~~~piilV~NK~Dl~~~~-~~ 164 (472)
T PRK03003 102 --------------GLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRR--SGKPVILAANKVDDERGE-AD 164 (472)
T ss_pred --------------hHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECccCCccc-hh
Confidence 1223456778889999999999999999999988999999987 589999999999986532 23
Q ss_pred HHHHHhcCC-CCccccccCCCCHHHHHHHHHhhcccccCccchhhhccCCcEEEeecCCCCChhhHHHHHhcCCCceecC
Q 005504 323 VSEFWSLGF-SPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSP 401 (693)
Q Consensus 323 ~~~~~~~g~-~~v~iSA~~g~gi~~Ll~~i~~~l~~~~~~~~~~~~~~~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~ 401 (693)
..+++.+|+ .++++||.+|.|+++|++.|.+.+++.... ...+...++|+++|+||||||||+|+|++.++..+++
T Consensus 165 ~~~~~~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~~~~~~---~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~ 241 (472)
T PRK03003 165 AAALWSLGLGEPHPVSALHGRGVGDLLDAVLAALPEVPRV---GSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDD 241 (472)
T ss_pred hHHHHhcCCCCeEEEEcCCCCCcHHHHHHHHhhccccccc---ccccccceEEEEECCCCCCHHHHHHHHhCCCcccccC
Confidence 345667777 578999999999999999999988652211 1112346899999999999999999999998888999
Q ss_pred CCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHH
Q 005504 402 ISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAER 481 (693)
Q Consensus 402 ~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~ 481 (693)
++|||+|.+...+.. ++..+.||||||+++..... ...+.++..++..+++.||++|+|+|++++.+.++..++..
T Consensus 242 ~~gtT~d~~~~~~~~-~~~~~~l~DTaG~~~~~~~~---~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~ 317 (472)
T PRK03003 242 VAGTTVDPVDSLIEL-GGKTWRFVDTAGLRRRVKQA---SGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSM 317 (472)
T ss_pred CCCccCCcceEEEEE-CCEEEEEEECCCcccccccc---chHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999888875 78899999999997754432 23466666677788999999999999999999999999999
Q ss_pred HHHhCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcEEEeccccCCCHHHHHHHHHHHHHHhhccCCchhHH
Q 005504 482 IEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVDKERSRRLSTATIN 561 (693)
Q Consensus 482 l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~piv~iSA~~g~gv~~L~~~i~~~~~~~~~~i~t~~ln 561 (693)
+.+.++|+|+|+||||+..... ...+.+.+.+.+....++|++++||++|.|++++|+.+.+.++++..+++|+.||
T Consensus 318 ~~~~~~piIiV~NK~Dl~~~~~---~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~~~i~t~~ln 394 (472)
T PRK03003 318 VIEAGRALVLAFNKWDLVDEDR---RYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALESWDTRIPTGRLN 394 (472)
T ss_pred HHHcCCCEEEEEECcccCChhH---HHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 9999999999999999975321 2234455666666667789999999999999999999999999999999999999
Q ss_pred HHHHhHhhccCCCCCCCCcceeEEEEEecccchhhhhhhccCCCCcchhhhhhhhccCCCCEEEEEeCCCCCCChHHHHH
Q 005504 562 QVVQEAVAFKSPPRTRGGRRGRVYYCTQLLLGIFVRSAFRYGALGPLHIKYDLLQAAVRPPTFVFFVNDAKLFPETYRRY 641 (693)
Q Consensus 562 ~~l~~~~~~~~~p~~~~~~~~k~~y~~q~~~~~~~r~~~~~~~~~~~~~~~~~l~~~~~pp~~v~~~n~~~~~~~~y~~~ 641 (693)
+++++++..+|||. .+|+++|+||+|| +.++||||+||+| +.++++|+||
T Consensus 395 ~~~~~~~~~~~~p~-~~g~~~k~~y~~q---------------------------~~~~pp~f~~~~~--~~~~~~y~~~ 444 (472)
T PRK03003 395 AWLGELVAATPPPV-RGGKQPRILFATQ---------------------------ASTRPPTFVLFTT--GFLEAGYRRF 444 (472)
T ss_pred HHHHHHHHcCCCCC-CCCeeeeEEEEEC---------------------------CCCCCCEEEEEeC--CCCChHHHHH
Confidence 99999999999996 5799999999999 9999999999976 6799999999
Q ss_pred HHHHHhhhcCCCCccEEEEEeecCcc
Q 005504 642 MEKQLRADAGFSGTPIRLLWRSRRKM 667 (693)
Q Consensus 642 l~~~~r~~~~~~g~pi~i~~~~~~~~ 667 (693)
|+|+||++|+|.||||+|.||++.+.
T Consensus 445 l~~~~r~~~~~~g~pi~~~~~~~~~~ 470 (472)
T PRK03003 445 LERRLRETFGFEGSPIRISVRVREKR 470 (472)
T ss_pred HHHHHHHHcCCCcceEEEEEEecCcc
Confidence 99999999999999999999877543
No 3
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=100.00 E-value=2e-72 Score=626.03 Aligned_cols=428 Identities=52% Similarity=0.831 Sum_probs=379.8
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCC
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (693)
+|+++|+||||||||+|+|++.+.+++++.+|+|+++.+..+.|++..+.+|||||+.... .
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~---~--------------- 62 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDD---D--------------- 62 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcc---h---------------
Confidence 4899999999999999999999888999999999999999999999999999999985311 1
Q ss_pred CCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCccchhhhHH
Q 005504 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVS 324 (693)
Q Consensus 245 g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~~~~~~ 324 (693)
.+...+..++..+++.+|+++||+|++.+++..+..++++|++ .++|+++|+||+|+..... ...
T Consensus 63 ------------~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~--~~~piilVvNK~D~~~~~~-~~~ 127 (429)
T TIGR03594 63 ------------GLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRK--SGKPVILVANKIDGKKEDA-VAA 127 (429)
T ss_pred ------------hHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH--hCCCEEEEEECccCCcccc-cHH
Confidence 1334566888899999999999999999999999999999988 5899999999999876442 345
Q ss_pred HHHhcCC-CCccccccCCCCHHHHHHHHHhhcccccCccchhhhccCCcEEEeecCCCCChhhHHHHHhcCCCceecCCC
Q 005504 325 EFWSLGF-SPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPIS 403 (693)
Q Consensus 325 ~~~~~g~-~~v~iSA~~g~gi~~Ll~~i~~~l~~~~~~~~~~~~~~~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~ 403 (693)
+++.+|+ .++++||.+|.|+++|++.+.+.++..... ........+|+++|++|+|||||+|+|++.++..+++.+
T Consensus 128 ~~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~~~~~---~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~ 204 (429)
T TIGR03594 128 EFYSLGFGEPIPISAEHGRGIGDLLDAILELLPEEEEE---EEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIA 204 (429)
T ss_pred HHHhcCCCCeEEEeCCcCCChHHHHHHHHHhcCccccc---ccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCC
Confidence 6788888 799999999999999999999888653221 112234579999999999999999999999888999999
Q ss_pred CcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHH
Q 005504 404 GTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIE 483 (693)
Q Consensus 404 gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~ 483 (693)
|||++.+...+.. ++..+.+|||||++++..+. +..+.++..++.++++.||++|+|+|++++.+.++..++..+.
T Consensus 205 gtt~~~~~~~~~~-~~~~~~liDT~G~~~~~~~~---~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~ 280 (429)
T TIGR03594 205 GTTRDSIDIPFER-NGKKYLLIDTAGIRRKGKVT---EGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLIL 280 (429)
T ss_pred CceECcEeEEEEE-CCcEEEEEECCCccccccch---hhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH
Confidence 9999999888875 77899999999998876654 4567888888999999999999999999999999999999999
Q ss_pred HhCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcEEEeccccCCCHHHHHHHHHHHHHHhhccCCchhHHHH
Q 005504 484 QEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVDKERSRRLSTATINQV 563 (693)
Q Consensus 484 ~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~piv~iSA~~g~gv~~L~~~i~~~~~~~~~~i~t~~ln~~ 563 (693)
+.++|+|+|+||||+.. .....+++.+.+...+....++|++++||++|.|++++++.+.+.+..+..+++|+.||++
T Consensus 281 ~~~~~iiiv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~~~~~i~t~~ln~~ 358 (429)
T TIGR03594 281 EAGKALVIVVNKWDLVK--DEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYENANRRISTSKLNRV 358 (429)
T ss_pred HcCCcEEEEEECcccCC--CHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHhcCcCCHHHHHHH
Confidence 99999999999999973 2234456677777778877889999999999999999999999999999999999999999
Q ss_pred HHhHhhccCCCCCCCCcceeEEEEEecccchhhhhhhccCCCCcchhhhhhhhccCCCCEEEEEeCCCCCCChHHHHHHH
Q 005504 564 VQEAVAFKSPPRTRGGRRGRVYYCTQLLLGIFVRSAFRYGALGPLHIKYDLLQAAVRPPTFVFFVNDAKLFPETYRRYME 643 (693)
Q Consensus 564 l~~~~~~~~~p~~~~~~~~k~~y~~q~~~~~~~r~~~~~~~~~~~~~~~~~l~~~~~pp~~v~~~n~~~~~~~~y~~~l~ 643 (693)
+.+++..++||.. +|+++|++|+|| +..+||+|++|+|+++.++++|+|||+
T Consensus 359 l~~~~~~~~~p~~-~~~~~k~~y~~q---------------------------~~~~pp~~~~~~n~~~~~~~~y~~~l~ 410 (429)
T TIGR03594 359 LEEAVAAHPPPLV-NGRRLKIKYATQ---------------------------VGTNPPTFVLFGNRPELLPFSYKRYLE 410 (429)
T ss_pred HHHHHHcCCCCCC-CCceeeEEEEEC---------------------------CCCCCCEEEEEEcCcccCCHHHHHHHH
Confidence 9999999998864 689999999999 999999999999999999999999999
Q ss_pred HHHhhhcCCCCccEEEEEe
Q 005504 644 KQLRADAGFSGTPIRLLWR 662 (693)
Q Consensus 644 ~~~r~~~~~~g~pi~i~~~ 662 (693)
|+||+.|+|.|+||+|.||
T Consensus 411 ~~~~~~~~~~g~p~~~~~~ 429 (429)
T TIGR03594 411 NQFREAFGFEGTPIRLEFK 429 (429)
T ss_pred HHHHHhcCCCcceEEEEeC
Confidence 9999999999999999995
No 4
>PRK00093 GTP-binding protein Der; Reviewed
Probab=100.00 E-value=2.1e-71 Score=618.69 Aligned_cols=431 Identities=52% Similarity=0.831 Sum_probs=378.8
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhcccC
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (693)
++|+|+|++|||||||+|+|++.+.+.+.+.+|+|+++.+..+.+++..+.+|||||+.... ..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~---~~------------- 65 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDD---DG------------- 65 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcc---hh-------------
Confidence 68999999999999999999999888899999999999999999999999999999997511 10
Q ss_pred CCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCccchhhhH
Q 005504 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQV 323 (693)
Q Consensus 244 ~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~~~~~ 323 (693)
+...+..++..++..+|++|||+|++++.+..+..+.++|++ .++|+++|+||+|+.... ...
T Consensus 66 --------------~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~--~~~piilv~NK~D~~~~~-~~~ 128 (435)
T PRK00093 66 --------------FEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRK--SNKPVILVVNKVDGPDEE-ADA 128 (435)
T ss_pred --------------HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCcEEEEEECccCccch-hhH
Confidence 223456778889999999999999999999999999999988 489999999999976532 344
Q ss_pred HHHHhcCC-CCccccccCCCCHHHHHHHHHhhcccccCccchhhhccCCcEEEeecCCCCChhhHHHHHhcCCCceecCC
Q 005504 324 SEFWSLGF-SPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPI 402 (693)
Q Consensus 324 ~~~~~~g~-~~v~iSA~~g~gi~~Ll~~i~~~l~~~~~~~~~~~~~~~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~ 402 (693)
.+++.+|+ .++++||.+|.|+++|++.|.+....... .......++|+++|+||+|||||+|+|++.++..+++.
T Consensus 129 ~~~~~lg~~~~~~iSa~~g~gv~~l~~~I~~~~~~~~~----~~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~ 204 (435)
T PRK00093 129 YEFYSLGLGEPYPISAEHGRGIGDLLDAILEELPEEEE----EDEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDI 204 (435)
T ss_pred HHHHhcCCCCCEEEEeeCCCCHHHHHHHHHhhCCcccc----ccccccceEEEEECCCCCCHHHHHHHHhCCCceeecCC
Confidence 56778888 48999999999999999999875433111 01123468999999999999999999999999999999
Q ss_pred CCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHH
Q 005504 403 SGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERI 482 (693)
Q Consensus 403 ~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l 482 (693)
+|||++.+...+.. ++..+.+|||||++++..+. ...+.++..+++++++.+|++|+|+|++++.+.++..++..+
T Consensus 205 ~gtt~~~~~~~~~~-~~~~~~lvDT~G~~~~~~~~---~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~ 280 (435)
T PRK00093 205 AGTTRDSIDTPFER-DGQKYTLIDTAGIRRKGKVT---EGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLA 280 (435)
T ss_pred CCceEEEEEEEEEE-CCeeEEEEECCCCCCCcchh---hHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999888875 78899999999998876654 457888888999999999999999999999999999999999
Q ss_pred HHhCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcEEEeccccCCCHHHHHHHHHHHHHHhhccCCchhHHH
Q 005504 483 EQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVDKERSRRLSTATINQ 562 (693)
Q Consensus 483 ~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~piv~iSA~~g~gv~~L~~~i~~~~~~~~~~i~t~~ln~ 562 (693)
.+.++|+|+|+||||+... ....++.+.+...+....++|++++||++|.|++++++.+.+.+..+..+++|+.+|+
T Consensus 281 ~~~~~~~ivv~NK~Dl~~~---~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~~~~~~i~t~~ln~ 357 (435)
T PRK00093 281 LEAGRALVIVVNKWDLVDE---KTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYENANRRISTSVLNR 357 (435)
T ss_pred HHcCCcEEEEEECccCCCH---HHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHcCcCChHHHHH
Confidence 9999999999999999743 2344566677777777788999999999999999999999999999999999999999
Q ss_pred HHHhHhhccCCCCCCCCcceeEEEEEecccchhhhhhhccCCCCcchhhhhhhhccCCCCEEEEEeCCCCCCChHHHHHH
Q 005504 563 VVQEAVAFKSPPRTRGGRRGRVYYCTQLLLGIFVRSAFRYGALGPLHIKYDLLQAAVRPPTFVFFVNDAKLFPETYRRYM 642 (693)
Q Consensus 563 ~l~~~~~~~~~p~~~~~~~~k~~y~~q~~~~~~~r~~~~~~~~~~~~~~~~~l~~~~~pp~~v~~~n~~~~~~~~y~~~l 642 (693)
++.+++..+|||. .+|+++|+||+|| +..+||+|++|+|+++.++++|+|||
T Consensus 358 ~l~~~~~~~~~p~-~~~~~~k~~~~~q---------------------------~~~~pp~f~~~~n~~~~~~~~y~~~l 409 (435)
T PRK00093 358 VLEEAVERHPPPL-VKGRRLKIKYATQ---------------------------VGTNPPTFVLFVNDPELLPFSYKRYL 409 (435)
T ss_pred HHHHHHHcCCCCC-CCCeeeeEEEEEc---------------------------CCCCCCEEEEEeCCcccCCHHHHHHH
Confidence 9999999998886 4689999999999 89999999999999999999999999
Q ss_pred HHHHhhhcCCCCccEEEEEeecCc
Q 005504 643 EKQLRADAGFSGTPIRLLWRSRRK 666 (693)
Q Consensus 643 ~~~~r~~~~~~g~pi~i~~~~~~~ 666 (693)
+|+||++|+|.|+||+|.||+|++
T Consensus 410 ~~~~r~~~~~~g~p~~~~~~~~~~ 433 (435)
T PRK00093 410 ENQLREAFDFEGTPIRLEFREKKN 433 (435)
T ss_pred HHHHHHHcCCCcccEEEEEecCCC
Confidence 999999999999999999986543
No 5
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=100.00 E-value=1.7e-69 Score=632.82 Aligned_cols=436 Identities=38% Similarity=0.619 Sum_probs=372.6
Q ss_pred CCCCeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005504 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (693)
Q Consensus 161 ~~~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~ 240 (693)
...++|+|+|+||||||||+|+|++.+.+++++.||+|+++......|++..+.+|||||+.... .
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~---~----------- 338 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV---E----------- 338 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCC---c-----------
Confidence 34579999999999999999999999888999999999999999999999999999999986311 1
Q ss_pred ccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCccchh
Q 005504 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI 320 (693)
Q Consensus 241 ~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~~ 320 (693)
.+...+..++..+++.||++|||+|++.+++..+..+.++|++ .++|+++|+||+|+....
T Consensus 339 ----------------~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~--~~~pvIlV~NK~D~~~~~- 399 (712)
T PRK09518 339 ----------------GIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRR--AGKPVVLAVNKIDDQASE- 399 (712)
T ss_pred ----------------cHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEEECcccccch-
Confidence 1233456788889999999999999999999999999999987 589999999999986542
Q ss_pred hhHHHHHhcCC-CCccccccCCCCHHHHHHHHHhhcccccCccchhhhccCCcEEEeecCCCCChhhHHHHHhcCCCcee
Q 005504 321 MQVSEFWSLGF-SPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIV 399 (693)
Q Consensus 321 ~~~~~~~~~g~-~~v~iSA~~g~gi~~Ll~~i~~~l~~~~~~~~~~~~~~~~~~I~ivG~~n~GKSSLin~llg~~~~~v 399 (693)
....+++.+|+ .++++||.||.|+++|++.|.+.+++....... ..+...++|+++|+||||||||+|+|++.++..+
T Consensus 400 ~~~~~~~~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~~~~~~~~a-~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v 478 (712)
T PRK09518 400 YDAAEFWKLGLGEPYPISAMHGRGVGDLLDEALDSLKVAEKTSGF-LTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVV 478 (712)
T ss_pred hhHHHHHHcCCCCeEEEECCCCCCchHHHHHHHHhcccccccccc-cCCCCCcEEEEECCCCCCHHHHHHHHhCcccccc
Confidence 23456777777 578999999999999999999988652211000 0123458999999999999999999999988889
Q ss_pred cCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHH
Q 005504 400 SPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIA 479 (693)
Q Consensus 400 ~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~ 479 (693)
++++|||++.+...+.. ++..+.+|||||+.+..... ...+.+...++..+++.||++++|+|++++.+.++..++
T Consensus 479 ~~~~gtT~d~~~~~~~~-~~~~~~liDTaG~~~~~~~~---~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~ 554 (712)
T PRK09518 479 NDLAGTTRDPVDEIVEI-DGEDWLFIDTAGIKRRQHKL---TGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVM 554 (712)
T ss_pred CCCCCCCcCcceeEEEE-CCCEEEEEECCCcccCcccc---hhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHH
Confidence 99999999999887775 78899999999997653322 234566666778889999999999999999999999999
Q ss_pred HHHHHhCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcEEEeccccCCCHHHHHHHHHHHHHHhhccCCchh
Q 005504 480 ERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVDKERSRRLSTAT 559 (693)
Q Consensus 480 ~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~piv~iSA~~g~gv~~L~~~i~~~~~~~~~~i~t~~ 559 (693)
..+.+.++|+|+|+||||+.+... .+.+.+.+...+....+.|++++||++|.|+++|++.+.+.+.++.++++|+.
T Consensus 555 ~~~~~~~~piIiV~NK~DL~~~~~---~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~~~~~i~T~~ 631 (712)
T PRK09518 555 SMAVDAGRALVLVFNKWDLMDEFR---RQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALESWDQRIPTGK 631 (712)
T ss_pred HHHHHcCCCEEEEEEchhcCChhH---HHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcccCChHH
Confidence 999889999999999999975322 23345556666666778899999999999999999999999999999999999
Q ss_pred HHHHHHhHhhccCCCCCCCCcceeEEEEEecccchhhhhhhccCCCCcchhhhhhhhccCCCCEEEEEeCCCCCCChHHH
Q 005504 560 INQVVQEAVAFKSPPRTRGGRRGRVYYCTQLLLGIFVRSAFRYGALGPLHIKYDLLQAAVRPPTFVFFVNDAKLFPETYR 639 (693)
Q Consensus 560 ln~~l~~~~~~~~~p~~~~~~~~k~~y~~q~~~~~~~r~~~~~~~~~~~~~~~~~l~~~~~pp~~v~~~n~~~~~~~~y~ 639 (693)
||+++++++..+|||. .+|+++|+||+|| +.++||||+||+| +.++++|+
T Consensus 632 Ln~~l~~~~~~~~~p~-~~g~~~ki~y~~q---------------------------~~~~Pp~f~~f~~--~~~~~~y~ 681 (712)
T PRK09518 632 LNAFLGKIQAEHPHPL-RGGKQPRILFATQ---------------------------ASTRPPRFVIFTT--GFLEHGYR 681 (712)
T ss_pred HHHHHHHHHhhCCCCc-cCCeeeeEEEEEC---------------------------CCCCCCEEEEEcC--CCCChHHH
Confidence 9999999999988886 5789999999999 9999999999987 67999999
Q ss_pred HHHHHHHhhhcCCCCccEEEEEeecCcc
Q 005504 640 RYMEKQLRADAGFSGTPIRLLWRSRRKM 667 (693)
Q Consensus 640 ~~l~~~~r~~~~~~g~pi~i~~~~~~~~ 667 (693)
|||+|+||++|+|.||||+|.||++.+.
T Consensus 682 r~l~~~~r~~~~~~g~pi~~~~~~~~~~ 709 (712)
T PRK09518 682 RFLERSLREEFGFEGSPIQISVNIREKK 709 (712)
T ss_pred HHHHHHHHHHcCCccceEEEEEEecccc
Confidence 9999999999999999999999877543
No 6
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.9e-38 Score=333.58 Aligned_cols=422 Identities=33% Similarity=0.360 Sum_probs=305.7
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhcccC
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (693)
+.+.+.|++|+||++|.|. ...+.+.+.+|+|+|...+...++...|+..||.|+..+....- .......+...+.
T Consensus 76 ~s~~v~~~~~~~~~~l~~~---~~r~~~~~e~~v~~D~~l~l~~~gp~sFtgeD~~el~~hgs~av-v~~~l~a~~~sg~ 151 (531)
T KOG1191|consen 76 RSVMVPKRRNAGLRALYNP---EVRVYVVDEDGVTRDRALGLYFLGPQSFTGEDVVELQTHGSSAV-VVGVLTALGASGI 151 (531)
T ss_pred cccccCCCCccccccccCh---hhcccccCCCCcchhhhhhccccCCceeeeeeeEEEEEecCccc-hhhHHHHhhhccC
Confidence 4577899999999999998 22356778899999999999899999999999999986554332 2233333444678
Q ss_pred CCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCccchhhhH
Q 005504 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQV 323 (693)
Q Consensus 244 ~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~~~~~ 323 (693)
+|+++....++..++..+...+...+-...|+|.+..++..+-...+.....+.... ..++.++-++++-...-.....
T Consensus 152 ~~ir~a~~geft~Raf~ngk~~Ltq~eg~~~lI~a~t~~q~~~Al~~v~g~~~~l~~-~~r~~lIe~~a~l~a~idf~e~ 230 (531)
T KOG1191|consen 152 PGIRLAEPGEFTRRAFLNGKLDLTQAEGIIDLIVAETESQRRAALDEVAGEALALCF-GWRKILIEALAGLEARIDFEEE 230 (531)
T ss_pred CCccccCchhhhhhhhhccccchhhhcChhhhhhhhhHhhhhhhhhhhcchhHHhhh-hHHHHHHHHHhccceeechhhc
Confidence 999999889999888888888888888888999999887654333333222222211 1233444455443322222222
Q ss_pred HHHHhcCCCCccccccCCCCHHHHHHHHHhhcccccCccchhhhccCCcEEEeecCCCCChhhHHHHHhcCCCceecCCC
Q 005504 324 SEFWSLGFSPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPIS 403 (693)
Q Consensus 324 ~~~~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l~~~~~~~~~~~~~~~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~ 403 (693)
..++..+...+++++ .+|++.+...+...+..+ .-+..++|+|+|+||||||||+|+|..+++.+|++.+
T Consensus 231 ~~l~~~~t~~~~~~~------~~l~d~v~s~l~~~~~~e----~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~ 300 (531)
T KOG1191|consen 231 RPLEEIETVEIFIES------LSLLDDVLSHLNKADEIE----RLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVP 300 (531)
T ss_pred CchhhccchhhhhHH------HHHHHHHHHHHHhhhhHH----HhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCC
Confidence 233333333444433 347788888777554321 2234589999999999999999999999999999999
Q ss_pred CcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHH
Q 005504 404 GTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIE 483 (693)
Q Consensus 404 gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~ 483 (693)
|||||.++..+.. +|.++.|+||||+++. ..+.+|...+.++.+.+..||++++|+|+....++++..+.+.+.
T Consensus 301 GTTRDaiea~v~~-~G~~v~L~DTAGiRe~-----~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~ 374 (531)
T KOG1191|consen 301 GTTRDAIEAQVTV-NGVPVRLSDTAGIREE-----SNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILE 374 (531)
T ss_pred CcchhhheeEeec-CCeEEEEEeccccccc-----cCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHH
Confidence 9999999999995 9999999999999882 336789999999999999999999999998888999999888887
Q ss_pred HhC------------CcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcEEEeccccCCCHHHHHHHHHHHHHHh
Q 005504 484 QEG------------KGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVDKER 551 (693)
Q Consensus 484 ~~~------------~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~piv~iSA~~g~gv~~L~~~i~~~~~~~ 551 (693)
..+ .|+|++.||.|+..+-..... .......... .-.+..++++|+++++|++.|..++
T Consensus 375 ~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~-~~~~~~~~~~-~~~~~i~~~vs~~tkeg~~~L~~al------- 445 (531)
T KOG1191|consen 375 TEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTK-IPVVYPSAEG-RSVFPIVVEVSCTTKEGCERLSTAL------- 445 (531)
T ss_pred HhccceEEEeccccccceEEEechhhccCccccccC-Cceecccccc-CcccceEEEeeechhhhHHHHHHHH-------
Confidence 653 578888888888754111100 0000000000 0012234558888888887777666
Q ss_pred hccCCchhHHHHHHhHhhccCCCCCCCCcceeEEEEEecccchhhhhhhccCCCCcchhhhhhhhccCCCCEEEEEeCCC
Q 005504 552 SRRLSTATINQVVQEAVAFKSPPRTRGGRRGRVYYCTQLLLGIFVRSAFRYGALGPLHIKYDLLQAAVRPPTFVFFVNDA 631 (693)
Q Consensus 552 ~~~i~t~~ln~~l~~~~~~~~~p~~~~~~~~k~~y~~q~~~~~~~r~~~~~~~~~~~~~~~~~l~~~~~pp~~v~~~n~~ 631 (693)
+|.|.+.....+.+|....+++++.+|.++ . .
T Consensus 446 --------l~~~~~~~~~~~s~~~t~~~~r~~~~~r~~---------------------------~--~----------- 477 (531)
T KOG1191|consen 446 --------LNIVERLVVSPHSAPPTLSQKRIKELLRTC---------------------------A--A----------- 477 (531)
T ss_pred --------HHHHHHhhcCCCCCchhhcchhHHHHHHhh---------------------------h--h-----------
Confidence 678888888777666666778888877777 1 1
Q ss_pred CCCChHHHHHHHHHHhhhcCCCCccEEEEEeecCc
Q 005504 632 KLFPETYRRYMEKQLRADAGFSGTPIRLLWRSRRK 666 (693)
Q Consensus 632 ~~~~~~y~~~l~~~~r~~~~~~g~pi~i~~~~~~~ 666 (693)
++.|.+|+.+++++.++|-|+|+|+.++...+
T Consensus 478 ---~~l~~~~~~k~~~~D~~la~~~lR~a~~~i~r 509 (531)
T KOG1191|consen 478 ---PELERRFLAKQLKEDIDLAGEPLRLAQRSIAR 509 (531)
T ss_pred ---hhHHHHHHhhhcccchhhccchHHHHHhhhcc
Confidence 18999999999999999999999999976654
No 7
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.96 E-value=1.8e-27 Score=253.64 Aligned_cols=272 Identities=28% Similarity=0.385 Sum_probs=200.9
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (693)
+.|+|+|+||||||||+|+|+|+..++|+++||+|||.++....+ .+..+.+|||+|+..... +.+......++
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~-~~~~f~lIDTgGl~~~~~-----~~l~~~i~~Qa 77 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEW-LGREFILIDTGGLDDGDE-----DELQELIREQA 77 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEE-cCceEEEEECCCCCcCCc-----hHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999885 788899999999975321 34677788899
Q ss_pred HHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcEEEecc
Q 005504 452 FRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTA 531 (693)
Q Consensus 452 ~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~piv~iSA 531 (693)
+.++..||++|||+|+..|++.+|..++++++..++|+|+|+||+|-...+ .....+..++...++++||
T Consensus 78 ~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e----------~~~~efyslG~g~~~~ISA 147 (444)
T COG1160 78 LIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAE----------ELAYEFYSLGFGEPVPISA 147 (444)
T ss_pred HHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhh----------hhHHHHHhcCCCCceEeeh
Confidence 999999999999999999999999999999998889999999999975221 1223455566778999999
Q ss_pred ccCCCHHHHHHHHHHHHH--Hh---hc---cCC-----------chhHHHHHHhHhhccCC-C----------CCCCC--
Q 005504 532 IAGQSVDKIIVAAEMVDK--ER---SR---RLS-----------TATINQVVQEAVAFKSP-P----------RTRGG-- 579 (693)
Q Consensus 532 ~~g~gv~~L~~~i~~~~~--~~---~~---~i~-----------t~~ln~~l~~~~~~~~~-p----------~~~~~-- 579 (693)
.+|.|+++|++++.+.+. +. .. .+. .+.+|.++.+......+ | ....+
T Consensus 148 ~Hg~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~ 227 (444)
T COG1160 148 EHGRGIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRK 227 (444)
T ss_pred hhccCHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeE
Confidence 999999999999998852 11 10 111 45577777665332211 1 00111
Q ss_pred ----------cceeEE-----EEEecccchhhhh---hhccCCCCcchhh-hhhh---hccCCCCEEEEEeCCCCCCCh-
Q 005504 580 ----------RRGRVY-----YCTQLLLGIFVRS---AFRYGALGPLHIK-YDLL---QAAVRPPTFVFFVNDAKLFPE- 636 (693)
Q Consensus 580 ----------~~~k~~-----y~~q~~~~~~~r~---~~~~~~~~~~~~~-~~~l---~~~~~pp~~v~~~n~~~~~~~- 636 (693)
++.|++ |.....+.-+.+. +|-.++..++.+. .+.+ .-..+|..+| +|+|+.+.+
T Consensus 228 ~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIv--vNKWDl~~~~ 305 (444)
T COG1160 228 YVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIV--VNKWDLVEED 305 (444)
T ss_pred EEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEE--EEccccCCch
Confidence 123333 3333222222233 7888899988873 3333 3455666666 899999987
Q ss_pred -HHHHHHHHHHhhhcCCCCccEEEEE
Q 005504 637 -TYRRYMEKQLRADAGFSGTPIRLLW 661 (693)
Q Consensus 637 -~y~~~l~~~~r~~~~~~g~pi~i~~ 661 (693)
......+..++..|+|-+.--.+.+
T Consensus 306 ~~~~~~~k~~i~~~l~~l~~a~i~~i 331 (444)
T COG1160 306 EATMEEFKKKLRRKLPFLDFAPIVFI 331 (444)
T ss_pred hhHHHHHHHHHHHHhccccCCeEEEE
Confidence 6677778889999987665444444
No 8
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.93 E-value=3.1e-25 Score=237.18 Aligned_cols=163 Identities=34% Similarity=0.524 Sum_probs=142.5
Q ss_pred CCcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 370 ~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
..++++|+|+||||||||+|+|+++++++|+++||||||.+...+.. +|.++.++||||+++. .+.+|...+.
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i-~G~pv~l~DTAGiRet------~d~VE~iGIe 288 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINL-NGIPVRLVDTAGIRET------DDVVERIGIE 288 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEE-CCEEEEEEecCCcccC------ccHHHHHHHH
Confidence 45899999999999999999999999999999999999999999997 9999999999999863 3678999999
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcEEEe
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYS 529 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~piv~i 529 (693)
++...+..||++++|+|++.+.+.+|..++. ....++|+++|+||.||....... .+ ......+++.+
T Consensus 289 Rs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~~-------~~----~~~~~~~~i~i 356 (454)
T COG0486 289 RAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIELE-------SE----KLANGDAIISI 356 (454)
T ss_pred HHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccccccc-------hh----hccCCCceEEE
Confidence 9999999999999999999988899988887 667789999999999998653311 11 11224579999
Q ss_pred ccccCCCHHHHHHHHHHHHHHh
Q 005504 530 TAIAGQSVDKIIVAAEMVDKER 551 (693)
Q Consensus 530 SA~~g~gv~~L~~~i~~~~~~~ 551 (693)
||++|.|++.|.++|.+.+...
T Consensus 357 Sa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 357 SAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred EecCccCHHHHHHHHHHHHhhc
Confidence 9999999999999999886654
No 9
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.93 E-value=1.6e-25 Score=211.66 Aligned_cols=156 Identities=28% Similarity=0.425 Sum_probs=120.6
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (693)
++|+++|+||||||||+|+|+|.+ ..++++||+|++...+.+.+ .+..+.++||||+...... . +...+.+.
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~-~~~~~~lvDlPG~ysl~~~-----s-~ee~v~~~ 72 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKL-GDQQVELVDLPGIYSLSSK-----S-EEERVARD 72 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEE-TTEEEEEEE----SSSSSS-----S-HHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEe-cCceEEEEECCCcccCCCC-----C-cHHHHHHH
Confidence 489999999999999999999997 77999999999999999986 6789999999999775332 1 22233333
Q ss_pred HHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcEEEecc
Q 005504 452 FRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTA 531 (693)
Q Consensus 452 ~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~piv~iSA 531 (693)
.-..+.+|++++|+|+++. +.++.++.++.+.++|+|+|+||+|+........ ..+.+.+.+ ++|++++||
T Consensus 73 ~l~~~~~D~ii~VvDa~~l--~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~i---d~~~Ls~~L----g~pvi~~sa 143 (156)
T PF02421_consen 73 YLLSEKPDLIIVVVDATNL--ERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEI---DAEKLSERL----GVPVIPVSA 143 (156)
T ss_dssp HHHHTSSSEEEEEEEGGGH--HHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE----HHHHHHHH----TS-EEEEBT
T ss_pred HHhhcCCCEEEEECCCCCH--HHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEE---CHHHHHHHh----CCCEEEEEe
Confidence 3335789999999999873 7888899999999999999999999876443322 123344444 589999999
Q ss_pred ccCCCHHHHHHHH
Q 005504 532 IAGQSVDKIIVAA 544 (693)
Q Consensus 532 ~~g~gv~~L~~~i 544 (693)
++|.|+++|+++|
T Consensus 144 ~~~~g~~~L~~~I 156 (156)
T PF02421_consen 144 RTGEGIDELKDAI 156 (156)
T ss_dssp TTTBTHHHHHHHH
T ss_pred CCCcCHHHHHhhC
Confidence 9999999999875
No 10
>COG1159 Era GTPase [General function prediction only]
Probab=99.92 E-value=1.4e-24 Score=220.09 Aligned_cols=174 Identities=30% Similarity=0.388 Sum_probs=146.4
Q ss_pred CcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHH
Q 005504 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (693)
Q Consensus 371 ~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (693)
.-.|+++|+||||||||+|+|+|++.+++|+.+.|||..+.+.+.. +..+++++||||+.+.. ..+..+++..
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~-~~~QiIfvDTPGih~pk------~~l~~~m~~~ 78 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTT-DNAQIIFVDTPGIHKPK------HALGELMNKA 78 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEc-CCceEEEEeCCCCCCcc------hHHHHHHHHH
Confidence 4579999999999999999999999999999999999999999886 67799999999997752 4667888999
Q ss_pred HHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcEEEec
Q 005504 451 AFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYST 530 (693)
Q Consensus 451 ~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~piv~iS 530 (693)
+..++..+|+++||+|+.+++...|..+++.+.+.+.|+|+++||+|...+... ...+.+..... ..+..++++|
T Consensus 79 a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~--l~~~~~~~~~~---~~f~~ivpiS 153 (298)
T COG1159 79 ARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTV--LLKLIAFLKKL---LPFKEIVPIS 153 (298)
T ss_pred HHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHH--HHHHHHHHHhh---CCcceEEEee
Confidence 999999999999999999999999999999999978899999999999875431 11222222222 3456899999
Q ss_pred cccCCCHHHHHHHHHHHHHHhhccCC
Q 005504 531 AIAGQSVDKIIVAAEMVDKERSRRLS 556 (693)
Q Consensus 531 A~~g~gv~~L~~~i~~~~~~~~~~i~ 556 (693)
|++|.|++.|.+.+...+.+.....+
T Consensus 154 A~~g~n~~~L~~~i~~~Lpeg~~~yp 179 (298)
T COG1159 154 ALKGDNVDTLLEIIKEYLPEGPWYYP 179 (298)
T ss_pred ccccCCHHHHHHHHHHhCCCCCCcCC
Confidence 99999999999999987655544444
No 11
>COG1159 Era GTPase [General function prediction only]
Probab=99.92 E-value=1.4e-24 Score=220.14 Aligned_cols=163 Identities=34% Similarity=0.536 Sum_probs=141.5
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhcccC
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (693)
-.|||+|+||||||||+|+|+|.+.+++++.|.+||....+..+.+..++.++||||+.....
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~----------------- 69 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKH----------------- 69 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcch-----------------
Confidence 369999999999999999999999999999999999999999999999999999999975211
Q ss_pred CCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCccchh--h
Q 005504 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI--M 321 (693)
Q Consensus 244 ~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~~--~ 321 (693)
.+-+.|.+.+..++..+|+++||+|+.++....|..+++.|++ .+.|+++++||+|...... .
T Consensus 70 -------------~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~--~~~pvil~iNKID~~~~~~~l~ 134 (298)
T COG1159 70 -------------ALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKK--TKTPVILVVNKIDKVKPKTVLL 134 (298)
T ss_pred -------------HHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhh--cCCCeEEEEEccccCCcHHHHH
Confidence 2335677889999999999999999999999999999999987 5789999999999876544 2
Q ss_pred hHHHHHh--cCC-CCccccccCCCCHHHHHHHHHhhcccc
Q 005504 322 QVSEFWS--LGF-SPLPISAISGTGTGELLDLVCSELKKV 358 (693)
Q Consensus 322 ~~~~~~~--~g~-~~v~iSA~~g~gi~~Ll~~i~~~l~~~ 358 (693)
...+++. ..| .++|+||.+|.|++.|++.+.+.+++.
T Consensus 135 ~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg 174 (298)
T COG1159 135 KLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPEG 174 (298)
T ss_pred HHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCCC
Confidence 3334433 334 689999999999999999999999864
No 12
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.90 E-value=1.6e-23 Score=198.09 Aligned_cols=150 Identities=31% Similarity=0.466 Sum_probs=114.4
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCC
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (693)
+|+++|.||||||||||+|+|.+ +.++++||+|.++..+.+.+++..+.+|||||+.+......+
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~e-------------- 66 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEE-------------- 66 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHH--------------
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcH--------------
Confidence 69999999999999999999998 788999999999999999999999999999998764332211
Q ss_pred CCchhhHHHHHhcchHHHHHHHHHHH--HhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCccchhh-
Q 005504 245 GIPLATREAAVARMPSMIERQATAAI--EESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM- 321 (693)
Q Consensus 245 g~~~~~~~~~~~~~~~~i~~~~~~~i--~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~~~- 321 (693)
++.+..++ ...|++++|+|+++ ...+..+...+.+ .++|+++|+||+|.......
T Consensus 67 ------------------e~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e--~g~P~vvvlN~~D~a~~~g~~ 124 (156)
T PF02421_consen 67 ------------------ERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLE--LGIPVVVVLNKMDEAERKGIE 124 (156)
T ss_dssp ------------------HHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHH--TTSSEEEEEETHHHHHHTTEE
T ss_pred ------------------HHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHH--cCCCEEEEEeCHHHHHHcCCE
Confidence 12333444 57999999999986 3445566677766 58999999999998754321
Q ss_pred -hHHH-HHhcCCCCccccccCCCCHHHHHHHH
Q 005504 322 -QVSE-FWSLGFSPLPISAISGTGTGELLDLV 351 (693)
Q Consensus 322 -~~~~-~~~~g~~~v~iSA~~g~gi~~Ll~~i 351 (693)
.... ...+|.+++++||.+|.|+++|+++|
T Consensus 125 id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 125 IDAEKLSERLGVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp E-HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred ECHHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence 1112 23468899999999999999999876
No 13
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=7.2e-24 Score=231.71 Aligned_cols=207 Identities=24% Similarity=0.223 Sum_probs=155.0
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEe------------------cCeeEEEEecCCc
Q 005504 160 EHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW------------------GEHEFMLVDTGGV 221 (693)
Q Consensus 160 ~~~~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~------------------~~~~~~lvDTpG~ 221 (693)
..+.|+|||+||.++|||.|++.|.+.+ ..-+...|+|.+.....+.. .-..+++|||||+
T Consensus 472 ~lRSPIcCilGHVDTGKTKlld~ir~tN-VqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpgh 550 (1064)
T KOG1144|consen 472 NLRSPICCILGHVDTGKTKLLDKIRGTN-VQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGH 550 (1064)
T ss_pred hcCCceEEEeecccccchHHHHHhhccc-cccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCc
Confidence 4467999999999999999999999987 55677778887765433322 2246999999999
Q ss_pred ccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhc
Q 005504 222 LNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY 301 (693)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~ 301 (693)
+++.+.+. +....||++|+|||++||+.++..+.+++||.
T Consensus 551 EsFtnlRs--------------------------------------rgsslC~~aIlvvdImhGlepqtiESi~lLR~-- 590 (1064)
T KOG1144|consen 551 ESFTNLRS--------------------------------------RGSSLCDLAILVVDIMHGLEPQTIESINLLRM-- 590 (1064)
T ss_pred hhhhhhhh--------------------------------------ccccccceEEEEeehhccCCcchhHHHHHHHh--
Confidence 88665432 55678999999999999999999999999998
Q ss_pred CCCcEEEEecccCCccch----------------------hh-----hHHHHHhcC---------------CCCcccccc
Q 005504 302 MDKFIILAVNKCESPRKG----------------------IM-----QVSEFWSLG---------------FSPLPISAI 339 (693)
Q Consensus 302 ~~~p~ivv~NK~D~~~~~----------------------~~-----~~~~~~~~g---------------~~~v~iSA~ 339 (693)
++.|||+++||+|+.... +. ...+|...| ++++|+||.
T Consensus 591 rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~ 670 (1064)
T KOG1144|consen 591 RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAI 670 (1064)
T ss_pred cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccc
Confidence 699999999999985311 00 001121111 268999999
Q ss_pred CCCCHHHHHHHHHhhcccccCccchhhhccCCcEEEeecCCCCChhhHHHHHhcCCC--ceecCCCCcccceEEEEEeCC
Q 005504 340 SGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDR--TIVSPISGTTRDAIDTEFTGP 417 (693)
Q Consensus 340 ~g~gi~~Ll~~i~~~l~~~~~~~~~~~~~~~~~~I~ivG~~n~GKSSLin~llg~~~--~~v~~~~gtT~d~~~~~~~~~ 417 (693)
+|.||++|+-+|+++.+..+... -+.++.+ .... +.+-+..|||+|.+..+..++
T Consensus 671 sGeGipdLl~llv~ltQk~m~~k----------------------l~y~~ev-~cTVlEVKvieG~GtTIDViLvNG~L~ 727 (1064)
T KOG1144|consen 671 SGEGIPDLLLLLVQLTQKTMVEK----------------------LAYVDEV-QCTVLEVKVIEGHGTTIDVILVNGELH 727 (1064)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHH----------------------Hhhhhhe-eeEEEEEEeecCCCceEEEEEEcceec
Confidence 99999999999999988665321 1111111 1112 234556689999999999999
Q ss_pred CCCeEEEEeCccc
Q 005504 418 EGQKFRLIDTAGI 430 (693)
Q Consensus 418 ~g~~i~liDTpG~ 430 (693)
.|..++++..-|-
T Consensus 728 eGD~IvvcG~~Gp 740 (1064)
T KOG1144|consen 728 EGDQIVVCGLQGP 740 (1064)
T ss_pred cCCEEEEcCCCCc
Confidence 9999999888774
No 14
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.90 E-value=1.3e-22 Score=217.14 Aligned_cols=161 Identities=33% Similarity=0.436 Sum_probs=134.7
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhcccC
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (693)
.+|+|+|+||||||||+|+|++++.++|++.||+|||.....+.++|.++.|+||+|+.+.. +..|.+
T Consensus 218 ~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~----d~VE~i-------- 285 (454)
T COG0486 218 LKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETD----DVVERI-------- 285 (454)
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCc----cHHHHH--------
Confidence 47999999999999999999999999999999999999999999999999999999997532 233322
Q ss_pred CCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCccchhhhH
Q 005504 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQV 323 (693)
Q Consensus 244 ~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~~~~~ 323 (693)
=.+.++..+++||++|||+|++.+++..|..+...+. .++|+++|+||+|+..+.....
T Consensus 286 ------------------GIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~~---~~~~~i~v~NK~DL~~~~~~~~ 344 (454)
T COG0486 286 ------------------GIERAKKAIEEADLVLFVLDASQPLDKEDLALIELLP---KKKPIIVVLNKADLVSKIELES 344 (454)
T ss_pred ------------------HHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHHhcc---cCCCEEEEEechhcccccccch
Confidence 1267888999999999999999998888888888433 4799999999999987643222
Q ss_pred HHHHhcCCCCccccccCCCCHHHHHHHHHhhcccc
Q 005504 324 SEFWSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (693)
Q Consensus 324 ~~~~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l~~~ 358 (693)
. ....+.+.+.+||++|.|++.|.+.|.+.+...
T Consensus 345 ~-~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 345 E-KLANGDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred h-hccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 2 223344689999999999999999998887754
No 15
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.89 E-value=2.9e-22 Score=193.23 Aligned_cols=172 Identities=53% Similarity=0.802 Sum_probs=140.5
Q ss_pred CcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHH
Q 005504 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (693)
Q Consensus 371 ~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (693)
.++|+++|.+|+|||||+|+|++.......+.+++|++.....+.. ++..+.+|||||+.+..... ...+.+...+
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiDtpG~~~~~~~~---~~~e~~~~~~ 77 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEY-DGKKYTLIDTAGIRRKGKVE---EGIEKYSVLR 77 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEE-CCeeEEEEECCCCccccchh---ccHHHHHHHH
Confidence 4789999999999999999999987777888999999988777775 67789999999987653322 3445565567
Q ss_pred HHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcEEEec
Q 005504 451 AFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYST 530 (693)
Q Consensus 451 ~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~piv~iS 530 (693)
+..+++.+|++++|+|+.++.+.++..++..+...++|+++|+||+|+..... .....+.+.+.+.+....+.+++++|
T Consensus 78 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~S 156 (174)
T cd01895 78 TLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDS-KTMKEFKKEIRRKLPFLDYAPIVFIS 156 (174)
T ss_pred HHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccH-HHHHHHHHHHHhhcccccCCceEEEe
Confidence 77788999999999999999888888888888888999999999999976421 22344455666666655568999999
Q ss_pred cccCCCHHHHHHHHHHH
Q 005504 531 AIAGQSVDKIIVAAEMV 547 (693)
Q Consensus 531 A~~g~gv~~L~~~i~~~ 547 (693)
|++|.|++++++.+.++
T Consensus 157 a~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 157 ALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ccCCCCHHHHHHHHHHh
Confidence 99999999999998765
No 16
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.89 E-value=1.7e-22 Score=211.14 Aligned_cols=166 Identities=25% Similarity=0.329 Sum_probs=128.6
Q ss_pred EEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHHHH
Q 005504 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (693)
Q Consensus 373 ~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~~ 452 (693)
+|+++|+||||||||+|+|+|.+...+++.++||++.+...... ++..+.+|||||+.+.. ..........+.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~-~~~qii~vDTPG~~~~~------~~l~~~~~~~~~ 74 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTT-GASQIIFIDTPGFHEKK------HSLNRLMMKEAR 74 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEc-CCcEEEEEECcCCCCCc------chHHHHHHHHHH
Confidence 68999999999999999999998888999999999988766654 56689999999986531 122334455677
Q ss_pred HHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcEEEeccc
Q 005504 453 RAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAI 532 (693)
Q Consensus 453 ~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~piv~iSA~ 532 (693)
.+++.+|++++|+|++++.+.. ..++..+...++|+++|+||+|+..... ....+........+.+++++||+
T Consensus 75 ~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~~~~------~~~~~~~~~~~~~~~~v~~iSA~ 147 (270)
T TIGR00436 75 SAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKFKDK------LLPLIDKYAILEDFKDIVPISAL 147 (270)
T ss_pred HHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCCHHH------HHHHHHHHHhhcCCCceEEEecC
Confidence 7889999999999999876554 5677778888999999999999964211 11222222222334589999999
Q ss_pred cCCCHHHHHHHHHHHHHHhh
Q 005504 533 AGQSVDKIIVAAEMVDKERS 552 (693)
Q Consensus 533 ~g~gv~~L~~~i~~~~~~~~ 552 (693)
+|.|+++|++.+.+......
T Consensus 148 ~g~gi~~L~~~l~~~l~~~~ 167 (270)
T TIGR00436 148 TGDNTSFLAAFIEVHLPEGP 167 (270)
T ss_pred CCCCHHHHHHHHHHhCCCCC
Confidence 99999999999988765433
No 17
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.89 E-value=3.3e-21 Score=226.36 Aligned_cols=164 Identities=28% Similarity=0.426 Sum_probs=132.2
Q ss_pred CCcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 370 ~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
..++|+++|+||||||||+|+|++....++++.+|+|++.+...... ++..+.+|||||+.... ..+......
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~-~~~~~~liDT~G~~~~~------~~~~~~~~~ 346 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEW-AGTDFKLVDTGGWEADV------EGIDSAIAS 346 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEE-CCEEEEEEeCCCcCCCC------ccHHHHHHH
Confidence 34789999999999999999999988888999999999998877764 67899999999986421 123444456
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcEEEe
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYS 529 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~piv~i 529 (693)
.+..+++.||++|+|+|++++++..+..+++.+...++|+|+|+||+|+..... . ..+ +...+...++++
T Consensus 347 ~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~-~--------~~~-~~~lg~~~~~~i 416 (712)
T PRK09518 347 QAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEY-D--------AAE-FWKLGLGEPYPI 416 (712)
T ss_pred HHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchh-h--------HHH-HHHcCCCCeEEE
Confidence 677789999999999999999999999999999999999999999999854211 0 111 111233356799
Q ss_pred ccccCCCHHHHHHHHHHHHHH
Q 005504 530 TAIAGQSVDKIIVAAEMVDKE 550 (693)
Q Consensus 530 SA~~g~gv~~L~~~i~~~~~~ 550 (693)
||++|.|+++|++.+.+.+..
T Consensus 417 SA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 417 SAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred ECCCCCCchHHHHHHHHhccc
Confidence 999999999999999877543
No 18
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.88 E-value=1.1e-21 Score=211.06 Aligned_cols=182 Identities=23% Similarity=0.247 Sum_probs=128.3
Q ss_pred hhhhhhhhhhhccccccCCCCCCCCeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEe-cCeeEEEEec
Q 005504 140 DRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW-GEHEFMLVDT 218 (693)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~-~~~~~~lvDT 218 (693)
.+.+.+...+.+...+..+.+.+.++|+++|+||||||||+|+|++.. +.+.+.+++|++.....+.+ ++..+.+|||
T Consensus 166 l~~~L~~~~~~~~~~r~~r~~~~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT 244 (351)
T TIGR03156 166 LKKELEKVEKQRERQRRRRKRADVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLDLPDGGEVLLTDT 244 (351)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEEEeCCCceEEEEec
Confidence 333333333333333333334556899999999999999999999987 77889999999999988888 6789999999
Q ss_pred CCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH-HHHHHH
Q 005504 219 GGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWL 297 (693)
Q Consensus 219 pG~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~-~i~~~L 297 (693)
||+.. ....+..+ .+ +.+...+.+||++|+|+|++++....+. .+.+++
T Consensus 245 ~G~~~--~l~~~lie---------------------------~f-~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L 294 (351)
T TIGR03156 245 VGFIR--DLPHELVA---------------------------AF-RATLEEVREADLLLHVVDASDPDREEQIEAVEKVL 294 (351)
T ss_pred Ccccc--cCCHHHHH---------------------------HH-HHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHH
Confidence 99853 11121111 12 3355678999999999999987665443 234455
Q ss_pred Hhhc-CCCcEEEEecccCCccchhhhHHHHHhcCCCCccccccCCCCHHHHHHHHHhh
Q 005504 298 RKNY-MDKFIILAVNKCESPRKGIMQVSEFWSLGFSPLPISAISGTGTGELLDLVCSE 354 (693)
Q Consensus 298 ~~~~-~~~p~ivv~NK~D~~~~~~~~~~~~~~~g~~~v~iSA~~g~gi~~Ll~~i~~~ 354 (693)
+... .++|+++|+||+|+...... .........++++||++|.|+++|++.|.+.
T Consensus 295 ~~l~~~~~piIlV~NK~Dl~~~~~v--~~~~~~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 295 EELGAEDIPQLLVYNKIDLLDEPRI--ERLEEGYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred HHhccCCCCEEEEEEeecCCChHhH--HHHHhCCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 4421 37899999999998753221 1111222357999999999999999998764
No 19
>PF14714 KH_dom-like: KH-domain-like of EngA bacterial GTPase enzymes, C-terminal; PDB: 2HJG_A 1MKY_A.
Probab=99.88 E-value=9.4e-23 Score=170.66 Aligned_cols=80 Identities=53% Similarity=1.027 Sum_probs=64.0
Q ss_pred cCCchhHHHHHHhHhhccCCCCCCCCcceeEEEEEecccchhhhhhhccCCCCcchhhhhhhhccCCCCEEEEEeCCCCC
Q 005504 554 RLSTATINQVVQEAVAFKSPPRTRGGRRGRVYYCTQLLLGIFVRSAFRYGALGPLHIKYDLLQAAVRPPTFVFFVNDAKL 633 (693)
Q Consensus 554 ~i~t~~ln~~l~~~~~~~~~p~~~~~~~~k~~y~~q~~~~~~~r~~~~~~~~~~~~~~~~~l~~~~~pp~~v~~~n~~~~ 633 (693)
|++|+.||+||++++..++|| . +|+++|++|+|| +.++|||||+|||+++.
T Consensus 1 Ri~T~~LN~~l~~~~~~~~pp-~-~g~~~Ki~Y~tQ---------------------------v~~~PPtFv~f~N~~~~ 51 (80)
T PF14714_consen 1 RISTSELNRFLQKALERHPPP-S-KGKRLKIYYATQ---------------------------VGTRPPTFVLFVNDPEL 51 (80)
T ss_dssp ---HHHHHHHHHHHHCCS--S-E-TTCC--EEEEEE---------------------------EETTTTEEEEEES-CCC
T ss_pred CCCHHHHHHHHHHHHHhCCCC-C-CCceeEEEEEEe---------------------------CCCCCCEEEEEeCCccc
Confidence 578999999999999999999 4 789999999999 99999999999999999
Q ss_pred CChHHHHHHHHHHhhhcCCCCccEEEEEe
Q 005504 634 FPETYRRYMEKQLRADAGFSGTPIRLLWR 662 (693)
Q Consensus 634 ~~~~y~~~l~~~~r~~~~~~g~pi~i~~~ 662 (693)
++++|+|||+|+||++|||.|+||+|.||
T Consensus 52 ~~~sY~ryL~n~lRe~f~f~G~Pi~l~~R 80 (80)
T PF14714_consen 52 LPESYKRYLENQLREAFGFEGVPIRLIFR 80 (80)
T ss_dssp --HHHHHHHHHHHHHHH--TTS--EEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCceeEEEEeC
Confidence 99999999999999999999999999996
No 20
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.87 E-value=1.1e-21 Score=188.06 Aligned_cols=153 Identities=25% Similarity=0.385 Sum_probs=118.8
Q ss_pred HHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCccchhh-hHHHHHhcCC--CCccccccCCC
Q 005504 266 ATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM-QVSEFWSLGF--SPLPISAISGT 342 (693)
Q Consensus 266 ~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~~~-~~~~~~~~g~--~~v~iSA~~g~ 342 (693)
++++++++|++++|+|++.+....+..+.+++.....++|+++|+||+|+..+... .....+...+ ..+++||.+|.
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~ 81 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPF 81 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeeccccc
Confidence 45788999999999999998777788888888764335899999999999754321 2223333223 35889999999
Q ss_pred CHHHHHHHHHhhcccccCccchhhhccCCcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeE
Q 005504 343 GTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKF 422 (693)
Q Consensus 343 gi~~Ll~~i~~~l~~~~~~~~~~~~~~~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i 422 (693)
|+++|++.|.+.+.... .....+|+++|.||||||||+|+|++.....+++++|+|++...... +..+
T Consensus 82 ~~~~L~~~l~~~~~~~~--------~~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~----~~~~ 149 (157)
T cd01858 82 GKGSLIQLLRQFSKLHS--------DKKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITL----MKRI 149 (157)
T ss_pred cHHHHHHHHHHHHhhhc--------cccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEc----CCCE
Confidence 99999999987654211 12236899999999999999999999999999999999998654332 3458
Q ss_pred EEEeCccc
Q 005504 423 RLIDTAGI 430 (693)
Q Consensus 423 ~liDTpG~ 430 (693)
.++||||+
T Consensus 150 ~liDtPGi 157 (157)
T cd01858 150 YLIDCPGV 157 (157)
T ss_pred EEEECcCC
Confidence 99999995
No 21
>PRK15494 era GTPase Era; Provisional
Probab=99.87 E-value=1.9e-21 Score=208.96 Aligned_cols=167 Identities=25% Similarity=0.375 Sum_probs=132.9
Q ss_pred CCcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 370 ~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
+..+|+++|+||||||||+|+|+|.....+++.++||++.+...+.. ++.++.+|||||+.+.. ..+......
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~-~~~qi~~~DTpG~~~~~------~~l~~~~~r 123 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITL-KDTQVILYDTPGIFEPK------GSLEKAMVR 123 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEe-CCeEEEEEECCCcCCCc------ccHHHHHHH
Confidence 45799999999999999999999998888999999999988777775 67799999999985421 123444556
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcC-CCCcEEE
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRAL-DWAPIVY 528 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~-~~~piv~ 528 (693)
.++.+++.||++|+|+|+.+++...+..++..+...+.|.|+|+||+|+... . .. .+.+.+... .+.++++
T Consensus 124 ~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~-~---~~----~~~~~l~~~~~~~~i~~ 195 (339)
T PRK15494 124 CAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK-Y---LN----DIKAFLTENHPDSLLFP 195 (339)
T ss_pred HHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc-c---HH----HHHHHHHhcCCCcEEEE
Confidence 6777889999999999999888888888888888888999999999998542 1 11 222233222 2367999
Q ss_pred eccccCCCHHHHHHHHHHHHHHh
Q 005504 529 STAIAGQSVDKIIVAAEMVDKER 551 (693)
Q Consensus 529 iSA~~g~gv~~L~~~i~~~~~~~ 551 (693)
+||++|.|+++|++.+.+.....
T Consensus 196 iSAktg~gv~eL~~~L~~~l~~~ 218 (339)
T PRK15494 196 ISALSGKNIDGLLEYITSKAKIS 218 (339)
T ss_pred EeccCccCHHHHHHHHHHhCCCC
Confidence 99999999999999998875443
No 22
>COG2262 HflX GTPases [General function prediction only]
Probab=99.87 E-value=2.3e-21 Score=204.01 Aligned_cols=201 Identities=24% Similarity=0.270 Sum_probs=157.8
Q ss_pred HhHHHhhHhhhcccchhhhhhhhhhhhccccccCCCCCCCCeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEE
Q 005504 124 YSSLLSRQLIIQDETDDRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMY 203 (693)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~ 203 (693)
+.-+..++.++.++...+++.+...+.+...+..+.+...|.|+++|++|+|||||||+|++.. ..+.+..+.|.++..
T Consensus 153 ~~lE~drR~ir~rI~~i~~eLe~v~~~R~~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~-~~~~d~LFATLdptt 231 (411)
T COG2262 153 TQLETDRRRIRRRIAKLKRELENVEKAREPRRKKRSRSGIPLVALVGYTNAGKSTLFNALTGAD-VYVADQLFATLDPTT 231 (411)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCeEEEEeeccccHHHHHHHHhccC-eeccccccccccCce
Confidence 3444567788888888888888888888888888888899999999999999999999999876 567889999999999
Q ss_pred EEEEec-CeeEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeC
Q 005504 204 GRSFWG-EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDG 282 (693)
Q Consensus 204 ~~~~~~-~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~ 282 (693)
..+.+. |+.+++.||-||.. ..+..+.+.| +.++..+.+||++|+|||+
T Consensus 232 R~~~l~~g~~vlLtDTVGFI~--~LP~~LV~AF----------------------------ksTLEE~~~aDlllhVVDa 281 (411)
T COG2262 232 RRIELGDGRKVLLTDTVGFIR--DLPHPLVEAF----------------------------KSTLEEVKEADLLLHVVDA 281 (411)
T ss_pred eEEEeCCCceEEEecCccCcc--cCChHHHHHH----------------------------HHHHHHhhcCCEEEEEeec
Confidence 988887 68999999999986 4444443332 5566778899999999999
Q ss_pred CCCCCHHHH-HHHHHHHhh-cCCCcEEEEecccCCccchhhhHHHHHhcCC-CCccccccCCCCHHHHHHHHHhhccc
Q 005504 283 QAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPRKGIMQVSEFWSLGF-SPLPISAISGTGTGELLDLVCSELKK 357 (693)
Q Consensus 283 ~~~~~~~d~-~i~~~L~~~-~~~~p~ivv~NK~D~~~~~~~~~~~~~~~g~-~~v~iSA~~g~gi~~Ll~~i~~~l~~ 357 (693)
+++...+.. .+.+.|.+. ....|+|+|+||+|+..... .......+. .++++||.+|.|++.|++.|.+.++.
T Consensus 282 Sdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~--~~~~~~~~~~~~v~iSA~~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 282 SDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE--ILAELERGSPNPVFISAKTGEGLDLLRERIIELLSG 357 (411)
T ss_pred CChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh--hhhhhhhcCCCeEEEEeccCcCHHHHHHHHHHHhhh
Confidence 998544443 345555552 24689999999999876543 111222222 58999999999999999999998874
No 23
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.87 E-value=3.2e-21 Score=201.47 Aligned_cols=161 Identities=29% Similarity=0.422 Sum_probs=126.3
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCC
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (693)
+|+++|+||||||||+|+|+|.+.+++++.|++|++...+....++.++.+|||||+.....
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~------------------ 63 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKH------------------ 63 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcc------------------
Confidence 68999999999999999999999888999999999988777667778899999999975211
Q ss_pred CCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCccchhh--h
Q 005504 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM--Q 322 (693)
Q Consensus 245 g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~~~--~ 322 (693)
.+...+.+.+..++..+|+++||+|++.+.... ..+.+.+.. .++|+++|+||+|+...... .
T Consensus 64 ------------~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~--~~~p~ilV~NK~Dl~~~~~~~~~ 128 (270)
T TIGR00436 64 ------------SLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQN--LKRPVVLTRNKLDNKFKDKLLPL 128 (270)
T ss_pred ------------hHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHh--cCCCEEEEEECeeCCCHHHHHHH
Confidence 112234566778899999999999999876554 566677766 47899999999998743211 1
Q ss_pred HHHHHh-cCC-CCccccccCCCCHHHHHHHHHhhcccc
Q 005504 323 VSEFWS-LGF-SPLPISAISGTGTGELLDLVCSELKKV 358 (693)
Q Consensus 323 ~~~~~~-~g~-~~v~iSA~~g~gi~~Ll~~i~~~l~~~ 358 (693)
...+.. .++ .++++||++|.|+++|++.|.+.++..
T Consensus 129 ~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~~ 166 (270)
T TIGR00436 129 IDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLPEG 166 (270)
T ss_pred HHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCCCC
Confidence 112222 244 689999999999999999999988753
No 24
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.87 E-value=2.3e-20 Score=208.07 Aligned_cols=159 Identities=31% Similarity=0.442 Sum_probs=131.7
Q ss_pred EEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHHHH
Q 005504 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (693)
Q Consensus 373 ~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~~ 452 (693)
+|+++|+||||||||+|+|++.....+++.+|+|++.....+.. ++..+.+|||||+.... ..+.......+.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~-~~~~~~liDTpG~~~~~------~~~~~~~~~~~~ 73 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEW-GGREFILIDTGGIEEDD------DGLDKQIREQAE 73 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEE-CCeEEEEEECCCCCCcc------hhHHHHHHHHHH
Confidence 58999999999999999999988888999999999998888775 78899999999985421 122333445677
Q ss_pred HHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcEEEeccc
Q 005504 453 RAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAI 532 (693)
Q Consensus 453 ~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~piv~iSA~ 532 (693)
.+++.||++++|+|+..+.+..+..+++++.+.++|+++|+||+|+..... . . ..+..++..+++++||+
T Consensus 74 ~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~-~-~--------~~~~~lg~~~~~~vSa~ 143 (429)
T TIGR03594 74 IAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDA-V-A--------AEFYSLGFGEPIPISAE 143 (429)
T ss_pred HHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcccc-c-H--------HHHHhcCCCCeEEEeCC
Confidence 788999999999999999999999999999999999999999999865321 1 0 11233445689999999
Q ss_pred cCCCHHHHHHHHHHHH
Q 005504 533 AGQSVDKIIVAAEMVD 548 (693)
Q Consensus 533 ~g~gv~~L~~~i~~~~ 548 (693)
+|.|++++++.+.+.+
T Consensus 144 ~g~gv~~ll~~i~~~l 159 (429)
T TIGR03594 144 HGRGIGDLLDAILELL 159 (429)
T ss_pred cCCChHHHHHHHHHhc
Confidence 9999999999998775
No 25
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.86 E-value=1.3e-20 Score=180.52 Aligned_cols=157 Identities=25% Similarity=0.308 Sum_probs=113.9
Q ss_pred EEEeecCCCCChhhHHHHHhcCCCcee--cCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHH
Q 005504 373 AIAIVGRPNVGKSSILNALVGEDRTIV--SPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (693)
Q Consensus 373 ~I~ivG~~n~GKSSLin~llg~~~~~v--~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (693)
.|+++|++|||||||+|+|.+...... ...+++|.+.....+....+..+.+|||||+.++. ..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~--------------~~ 67 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFI--------------KN 67 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHH--------------HH
Confidence 689999999999999999998542222 23467787776666654236799999999986541 23
Q ss_pred HHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCC-cEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcC--CCCcEE
Q 005504 451 AFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGK-GCLIVVNKWDTIPNKNQQTATYYEQDVREKLRAL--DWAPIV 527 (693)
Q Consensus 451 ~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~-p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~--~~~piv 527 (693)
+..+++.+|++++|+|+.++...+....+..+...+. |+++|+||+|+.... ......+++.+.+... ...+++
T Consensus 68 ~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 144 (164)
T cd04171 68 MLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDED---WLELVEEEIRELLAGTFLADAPIF 144 (164)
T ss_pred HHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHH---HHHHHHHHHHHHHHhcCcCCCcEE
Confidence 4456789999999999988766666666655555565 999999999996532 1112233444444432 357999
Q ss_pred EeccccCCCHHHHHHHHHH
Q 005504 528 YSTAIAGQSVDKIIVAAEM 546 (693)
Q Consensus 528 ~iSA~~g~gv~~L~~~i~~ 546 (693)
++||++|.|++++++.+.+
T Consensus 145 ~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 145 PVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred EEeCCCCcCHHHHHHHHhh
Confidence 9999999999999988753
No 26
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.85 E-value=1.6e-20 Score=178.49 Aligned_cols=156 Identities=56% Similarity=0.893 Sum_probs=128.3
Q ss_pred EEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCCCC
Q 005504 167 AIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGI 246 (693)
Q Consensus 167 ~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~g~ 246 (693)
+++|++|||||||+|+|.+.+...++..+++|++.......+.+..+.+|||||+.....
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~-------------------- 60 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE-------------------- 60 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh--------------------
Confidence 479999999999999999987777888999999999988899999999999999975321
Q ss_pred chhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCccchhhhHHHH
Q 005504 247 PLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEF 326 (693)
Q Consensus 247 ~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~~~~~~~~ 326 (693)
.+...+...+...+..+|++++|+|+.++.+..+..+.+++++ .+.|+++|+||+|+...... ...+
T Consensus 61 ----------~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~--~~~piiiv~nK~D~~~~~~~-~~~~ 127 (157)
T cd01894 61 ----------GISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRK--SKKPVILVVNKVDNIKEEDE-AAEF 127 (157)
T ss_pred ----------HHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHh--cCCCEEEEEECcccCChHHH-HHHH
Confidence 0112234556677889999999999998888888888888877 47999999999999875432 3345
Q ss_pred HhcCC-CCccccccCCCCHHHHHHHHHhhc
Q 005504 327 WSLGF-SPLPISAISGTGTGELLDLVCSEL 355 (693)
Q Consensus 327 ~~~g~-~~v~iSA~~g~gi~~Ll~~i~~~l 355 (693)
..++. .++++||++|.|++++++.|.+.+
T Consensus 128 ~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (157)
T cd01894 128 YSLGFGEPIPISAEHGRGIGDLLDAILELL 157 (157)
T ss_pred HhcCCCCeEEEecccCCCHHHHHHHHHhhC
Confidence 56666 789999999999999999998653
No 27
>PRK15494 era GTPase Era; Provisional
Probab=99.85 E-value=1.3e-20 Score=202.49 Aligned_cols=163 Identities=27% Similarity=0.414 Sum_probs=131.1
Q ss_pred CCeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005504 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (693)
Q Consensus 163 ~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (693)
..+|+++|++|||||||+|+|++.+.+++++.+++|++...+.+.+++.++.+|||||+.....
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~---------------- 115 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKG---------------- 115 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcc----------------
Confidence 3589999999999999999999998888899999999998888889999999999999964211
Q ss_pred CCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCccchhhh
Q 005504 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ 322 (693)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~~~~ 322 (693)
.+...+.+.+..++..||++|||+|+..++...+..+++.++. .+.|.++|+||+|+.......
T Consensus 116 --------------~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~--~~~p~IlViNKiDl~~~~~~~ 179 (339)
T PRK15494 116 --------------SLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRS--LNIVPIFLLNKIDIESKYLND 179 (339)
T ss_pred --------------cHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEEEhhcCccccHHH
Confidence 1122344666677899999999999998888877778888776 467889999999986543223
Q ss_pred HHHHHh-cC--CCCccccccCCCCHHHHHHHHHhhccc
Q 005504 323 VSEFWS-LG--FSPLPISAISGTGTGELLDLVCSELKK 357 (693)
Q Consensus 323 ~~~~~~-~g--~~~v~iSA~~g~gi~~Ll~~i~~~l~~ 357 (693)
..+++. .+ ..++++||++|.|+++|++.|.+.+++
T Consensus 180 ~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 180 IKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKI 217 (339)
T ss_pred HHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCC
Confidence 333333 22 257999999999999999999998875
No 28
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.85 E-value=1.4e-20 Score=202.57 Aligned_cols=159 Identities=25% Similarity=0.382 Sum_probs=119.7
Q ss_pred cCCcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHH
Q 005504 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (693)
Q Consensus 369 ~~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (693)
...++|+++|.||||||||+|+|++.+ ..+.+.+++|+|+....+.+.++..+.+|||||+.+...- +..+. .
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~----~lie~--f 259 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPH----ELVAA--F 259 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCH----HHHHH--H
Confidence 355899999999999999999999986 6788999999999988888766789999999998442110 12232 3
Q ss_pred HHHHHHHhcCCeEEEEecccccCCHHHHH-HHHHHHH---hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005504 449 NRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (693)
Q Consensus 449 ~~~~~~i~~aDvvllViDa~~~~~~~d~~-~~~~l~~---~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~ 524 (693)
..++..+..||++++|+|++++.+..+.. +...+.. .++|+++|+||+|+.+... +. .. .. ...
T Consensus 260 ~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~------v~-~~---~~--~~~ 327 (351)
T TIGR03156 260 RATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR------IE-RL---EE--GYP 327 (351)
T ss_pred HHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh------HH-HH---Hh--CCC
Confidence 45677889999999999999876655542 2333333 3789999999999964311 11 11 11 124
Q ss_pred cEEEeccccCCCHHHHHHHHHH
Q 005504 525 PIVYSTAIAGQSVDKIIVAAEM 546 (693)
Q Consensus 525 piv~iSA~~g~gv~~L~~~i~~ 546 (693)
+++++||++|.|+++|++.|.+
T Consensus 328 ~~i~iSAktg~GI~eL~~~I~~ 349 (351)
T TIGR03156 328 EAVFVSAKTGEGLDLLLEAIAE 349 (351)
T ss_pred CEEEEEccCCCCHHHHHHHHHh
Confidence 7899999999999999998864
No 29
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.85 E-value=1.1e-20 Score=210.17 Aligned_cols=158 Identities=39% Similarity=0.562 Sum_probs=129.4
Q ss_pred CCcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 370 ~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
..++|+++|.||||||||+|+|++.+...+++.+|||+|.....+.. +|.++.+|||||+++.. +.++.....
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~-~g~~i~l~DT~G~~~~~------~~ie~~gi~ 286 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINL-DGIPLRLIDTAGIRETD------DEVEKIGIE 286 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEE-CCeEEEEEeCCCCCCCc------cHHHHHHHH
Confidence 45799999999999999999999988888999999999998888876 78899999999997531 344555567
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcEEEe
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYS 529 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~piv~i 529 (693)
+++..++.+|++++|+|++++.+.++..++.. ..++|+++|+||+|+...... . .....+++++
T Consensus 287 ~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~~~~~------~--------~~~~~~~i~i 350 (449)
T PRK05291 287 RSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTGEIDL------E--------EENGKPVIRI 350 (449)
T ss_pred HHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccccchh------h--------hccCCceEEE
Confidence 78888999999999999999887777665554 457999999999999653211 0 1224689999
Q ss_pred ccccCCCHHHHHHHHHHHHHH
Q 005504 530 TAIAGQSVDKIIVAAEMVDKE 550 (693)
Q Consensus 530 SA~~g~gv~~L~~~i~~~~~~ 550 (693)
||++|.|+++|++.+.+....
T Consensus 351 SAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 351 SAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred EeeCCCCHHHHHHHHHHHHhh
Confidence 999999999999999877543
No 30
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.85 E-value=2.3e-20 Score=185.09 Aligned_cols=150 Identities=19% Similarity=0.251 Sum_probs=120.2
Q ss_pred cEEEeecCCCCChhhHHHHHhcC------CCcee---------cCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhh
Q 005504 372 PAIAIVGRPNVGKSSILNALVGE------DRTIV---------SPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAI 436 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~------~~~~v---------~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~ 436 (693)
.+|+++|++|+|||||+++|++. .+... ....|+|++.....+.. ++..+.++||||+.++
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~~~--- 78 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHADY--- 78 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecC-CCeEEEEEECcCHHHH---
Confidence 68999999999999999999864 11111 12568999988877774 7789999999998654
Q ss_pred ccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCc-EEEEEeccCCCCCcchhhHHHHHHHHH
Q 005504 437 ASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKG-CLIVVNKWDTIPNKNQQTATYYEQDVR 515 (693)
Q Consensus 437 ~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p-~Ivv~NK~Dl~~~~~~~~~~~~~~~i~ 515 (693)
...+...+..+|++++|+|+..+...++..++..+...++| +|+|+||||++.. ....+.+.+++.
T Consensus 79 -----------~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~--~~~~~~~~~~i~ 145 (195)
T cd01884 79 -----------IKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDD--EELLELVEMEVR 145 (195)
T ss_pred -----------HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCc--HHHHHHHHHHHH
Confidence 33556788999999999999999999999999999999998 7799999999742 233445666777
Q ss_pred HHHhcCC----CCcEEEeccccCCCHH
Q 005504 516 EKLRALD----WAPIVYSTAIAGQSVD 538 (693)
Q Consensus 516 ~~l~~~~----~~piv~iSA~~g~gv~ 538 (693)
+.+..++ ++|++++||++|.|..
T Consensus 146 ~~l~~~g~~~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 146 ELLSKYGFDGDNTPIVRGSALKALEGD 172 (195)
T ss_pred HHHHHhcccccCCeEEEeeCccccCCC
Confidence 7777654 4899999999999854
No 31
>PRK11058 GTPase HflX; Provisional
Probab=99.85 E-value=1.6e-20 Score=206.75 Aligned_cols=166 Identities=20% Similarity=0.211 Sum_probs=121.8
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCe-eEEEEecCCcccccCCchhhhhhhhhh
Q 005504 160 EHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH-EFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (693)
Q Consensus 160 ~~~~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~-~~~lvDTpG~~~~~~~~~~~~~~~~~~ 238 (693)
..+.|.|+++|+||||||||+|+|++.+.. +.+.+++|.+.....+.+.+. .+.+|||||+... ....+.+
T Consensus 194 ~~~~p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~--lp~~lve----- 265 (426)
T PRK11058 194 KADVPTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFIRH--LPHDLVA----- 265 (426)
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEecCccccc--CCHHHHH-----
Confidence 345689999999999999999999998754 788999999999888887664 8999999999541 1121111
Q ss_pred hcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHH-HHHHHHhh-cCCCcEEEEecccCCc
Q 005504 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE-IADWLRKN-YMDKFIILAVNKCESP 316 (693)
Q Consensus 239 ~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~-i~~~L~~~-~~~~p~ivv~NK~D~~ 316 (693)
.+ ..+...+..||++|+|+|++++....+.. +.+++... ..++|+++|+||+|+.
T Consensus 266 ----------------------~f-~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~ 322 (426)
T PRK11058 266 ----------------------AF-KATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDML 322 (426)
T ss_pred ----------------------HH-HHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCC
Confidence 12 23456788999999999999876555442 33444432 1368999999999986
Q ss_pred cchhhhHHHHHhcCCC-CccccccCCCCHHHHHHHHHhhccc
Q 005504 317 RKGIMQVSEFWSLGFS-PLPISAISGTGTGELLDLVCSELKK 357 (693)
Q Consensus 317 ~~~~~~~~~~~~~g~~-~v~iSA~~g~gi~~Ll~~i~~~l~~ 357 (693)
.... ........+.+ ++++||++|.|+++|++.|.+.+..
T Consensus 323 ~~~~-~~~~~~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 323 DDFE-PRIDRDEENKPIRVWLSAQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred Cchh-HHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 5321 11122234444 4889999999999999999988753
No 32
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.85 E-value=7.7e-21 Score=187.83 Aligned_cols=160 Identities=28% Similarity=0.412 Sum_probs=122.9
Q ss_pred CcEEEeecCCCCChhhHHHHHhcCCCce-----------------ecCCCCcccceEEEEEe-CCCCCeEEEEeCccccc
Q 005504 371 IPAIAIVGRPNVGKSSILNALVGEDRTI-----------------VSPISGTTRDAIDTEFT-GPEGQKFRLIDTAGIRK 432 (693)
Q Consensus 371 ~~~I~ivG~~n~GKSSLin~llg~~~~~-----------------v~~~~gtT~d~~~~~~~-~~~g~~i~liDTpG~~~ 432 (693)
.++|+++|+.++|||||+++|++..... .....|.|.+.....+. ...+..+.++||||+.+
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 4789999999999999999999643221 11223677777666665 23678999999999866
Q ss_pred hhhhccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHHH
Q 005504 433 RAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQ 512 (693)
Q Consensus 433 ~~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~ 512 (693)
+ ...+.+++..+|++|+|+|+.++...+....+..+...++|+|+|+||+|+.. ....+..+
T Consensus 83 f--------------~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~----~~~~~~~~ 144 (188)
T PF00009_consen 83 F--------------IKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIE----KELEEIIE 144 (188)
T ss_dssp H--------------HHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSH----HHHHHHHH
T ss_pred e--------------eecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchh----hhHHHHHH
Confidence 4 33566778999999999999999999999999999999999999999999973 22233334
Q ss_pred HHHHHH----hcCC--CCcEEEeccccCCCHHHHHHHHHHHH
Q 005504 513 DVREKL----RALD--WAPIVYSTAIAGQSVDKIIVAAEMVD 548 (693)
Q Consensus 513 ~i~~~l----~~~~--~~piv~iSA~~g~gv~~L~~~i~~~~ 548 (693)
++...+ ...+ ..|++++||++|+|+++|++.+.+..
T Consensus 145 ~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 145 EIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp HHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred HHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 444222 2222 46899999999999999999998653
No 33
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.85 E-value=2.8e-20 Score=176.75 Aligned_cols=155 Identities=33% Similarity=0.457 Sum_probs=122.0
Q ss_pred EeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHHHHHH
Q 005504 375 AIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRA 454 (693)
Q Consensus 375 ~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~ 454 (693)
+++|.+|||||||+|+|++.....++..+++|++........ ++..+.+|||||+.+... .........+...
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~DtpG~~~~~~------~~~~~~~~~~~~~ 73 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEW-GGREFILIDTGGIEPDDE------GISKEIREQAELA 73 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEE-CCeEEEEEECCCCCCchh------HHHHHHHHHHHHH
Confidence 579999999999999999987667888999999888777764 678899999999976422 1122223345567
Q ss_pred HhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcEEEeccccC
Q 005504 455 IRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAG 534 (693)
Q Consensus 455 i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~piv~iSA~~g 534 (693)
++.+|++++|+|+.++.+..+..+..++...++|+++|+||+|+...... ...+...+..+++++||++|
T Consensus 74 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~----------~~~~~~~~~~~~~~~Sa~~~ 143 (157)
T cd01894 74 IEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE----------AAEFYSLGFGEPIPISAEHG 143 (157)
T ss_pred HHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH----------HHHHHhcCCCCeEEEecccC
Confidence 88999999999999888888888888888889999999999999653211 11222333347899999999
Q ss_pred CCHHHHHHHHHH
Q 005504 535 QSVDKIIVAAEM 546 (693)
Q Consensus 535 ~gv~~L~~~i~~ 546 (693)
.|++++++.+.+
T Consensus 144 ~gv~~l~~~l~~ 155 (157)
T cd01894 144 RGIGDLLDAILE 155 (157)
T ss_pred CCHHHHHHHHHh
Confidence 999999999865
No 34
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.85 E-value=4.2e-20 Score=197.41 Aligned_cols=165 Identities=21% Similarity=0.312 Sum_probs=123.8
Q ss_pred CcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHH
Q 005504 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (693)
Q Consensus 371 ~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (693)
...|+|||.||||||||+|+|++.. ..++++++||+++....+.+.++..+++|||||+.+... .......+
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~-~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~-------~~~gLg~~ 229 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGAS-------EGAGLGHR 229 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCC-CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCC-------ccccHHHH
Confidence 3579999999999999999999875 558999999999999888765677899999999965321 11223457
Q ss_pred HHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHH-----hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005504 451 AFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ-----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (693)
Q Consensus 451 ~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~-----~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~ 524 (693)
+++++++||++|+|+|+++..+.++. .|...+.. .++|+++|+||+|+....... . ..+...+... ..
T Consensus 230 flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~--~---~~~~~~~~~~-~~ 303 (335)
T PRK12299 230 FLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEER--E---KRAALELAAL-GG 303 (335)
T ss_pred HHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHH--H---HHHHHHHHhc-CC
Confidence 78899999999999999875445554 35566654 268999999999996532211 1 1111122222 36
Q ss_pred cEEEeccccCCCHHHHHHHHHHHHH
Q 005504 525 PIVYSTAIAGQSVDKIIVAAEMVDK 549 (693)
Q Consensus 525 piv~iSA~~g~gv~~L~~~i~~~~~ 549 (693)
+++++||+++.|+++|++++.+.+.
T Consensus 304 ~i~~iSAktg~GI~eL~~~L~~~l~ 328 (335)
T PRK12299 304 PVFLISAVTGEGLDELLRALWELLE 328 (335)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999999987654
No 35
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.84 E-value=4.1e-20 Score=201.27 Aligned_cols=165 Identities=22% Similarity=0.266 Sum_probs=122.7
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (693)
..|+|||+||||||||+|+|++.+ ..++++|+||+.++...+...+++.++|+||||+.+... .......++
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k-~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~-------~~~~Lg~~~ 231 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAK-PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGAS-------EGAGLGIRF 231 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCc-ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCcccccc-------chhhHHHHH
Confidence 479999999999999999999876 489999999999999988864556799999999975321 112234567
Q ss_pred HHHHhcCCeEEEEecccc---c-CCHHHHHHHHHHHHh-----CCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCC
Q 005504 452 FRAIRRSDVVALVIEAMA---C-ITEQDCRIAERIEQE-----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD 522 (693)
Q Consensus 452 ~~~i~~aDvvllViDa~~---~-~~~~d~~~~~~l~~~-----~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~ 522 (693)
+++++++|++++|+|++. . ...+...+++.+... ++|+|+|+||+|+..... ..+..+.+.+. ..
T Consensus 232 l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e---l~~~l~~l~~~---~~ 305 (390)
T PRK12298 232 LKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEE---AEERAKAIVEA---LG 305 (390)
T ss_pred HHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHH---HHHHHHHHHHH---hC
Confidence 789999999999999872 1 223334566666653 689999999999964321 11122222222 22
Q ss_pred C-CcEEEeccccCCCHHHHHHHHHHHHHH
Q 005504 523 W-APIVYSTAIAGQSVDKIIVAAEMVDKE 550 (693)
Q Consensus 523 ~-~piv~iSA~~g~gv~~L~~~i~~~~~~ 550 (693)
+ .+++++||+++.|+++|++.|.+.+..
T Consensus 306 ~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 306 WEGPVYLISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred CCCCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence 2 379999999999999999999877544
No 36
>PRK00089 era GTPase Era; Reviewed
Probab=99.84 E-value=5.5e-20 Score=194.48 Aligned_cols=167 Identities=32% Similarity=0.448 Sum_probs=131.6
Q ss_pred CcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHH
Q 005504 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (693)
Q Consensus 371 ~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (693)
...|+++|+||||||||+|+|+|.+...+++.++||++.+...+.. ++..+++|||||+.+.. ..........
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~------~~l~~~~~~~ 77 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPK------RALNRAMNKA 77 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCch------hHHHHHHHHH
Confidence 3579999999999999999999999889999999999988776664 55799999999986532 1223444556
Q ss_pred HHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcEEEec
Q 005504 451 AFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYST 530 (693)
Q Consensus 451 ~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~piv~iS 530 (693)
+..++..+|++++|+|++++++..+..++..+...++|+++|+||+|+..... ......+.+.+ ...+.+++++|
T Consensus 78 ~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~--~l~~~~~~l~~---~~~~~~i~~iS 152 (292)
T PRK00089 78 AWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKE--ELLPLLEELSE---LMDFAEIVPIS 152 (292)
T ss_pred HHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHH--HHHHHHHHHHh---hCCCCeEEEec
Confidence 67788999999999999998888888888888877899999999999974321 11122222222 23457899999
Q ss_pred cccCCCHHHHHHHHHHHHH
Q 005504 531 AIAGQSVDKIIVAAEMVDK 549 (693)
Q Consensus 531 A~~g~gv~~L~~~i~~~~~ 549 (693)
|++|.|+++|++.+.+...
T Consensus 153 A~~~~gv~~L~~~L~~~l~ 171 (292)
T PRK00089 153 ALKGDNVDELLDVIAKYLP 171 (292)
T ss_pred CCCCCCHHHHHHHHHHhCC
Confidence 9999999999999987754
No 37
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.84 E-value=4.6e-20 Score=178.26 Aligned_cols=160 Identities=23% Similarity=0.271 Sum_probs=115.2
Q ss_pred EEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCC-eEEEEeCccccchhhhccCCChhhHhHHHHH
Q 005504 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ-KFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (693)
Q Consensus 373 ~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~-~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (693)
+|+++|++|||||||+|+|.+... .++..+++|++.....+.. ++. .+.+|||||+.+.... .......+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~-------~~~~~~~~ 72 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRV-DDGRSFVVADIPGLIEGASE-------GKGLGHRF 72 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEc-CCCCeEEEEecCcccCcccc-------cCCchHHH
Confidence 589999999999999999998754 6778889998887777665 454 8999999998543211 01122345
Q ss_pred HHHHhcCCeEEEEeccccc-CCHHHH-HHHHHHHHh-----CCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005504 452 FRAIRRSDVVALVIEAMAC-ITEQDC-RIAERIEQE-----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (693)
Q Consensus 452 ~~~i~~aDvvllViDa~~~-~~~~d~-~~~~~l~~~-----~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~ 524 (693)
++.+..+|++++|+|++++ .+.+.. .+.+.+.+. ++|+++|+||+|+.+.... ...+...+......
T Consensus 73 ~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~------~~~~~~~~~~~~~~ 146 (170)
T cd01898 73 LRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL------FELLKELLKELWGK 146 (170)
T ss_pred HHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh------HHHHHHHHhhCCCC
Confidence 5667889999999999876 333333 455555543 6899999999999654321 11222223332357
Q ss_pred cEEEeccccCCCHHHHHHHHHHH
Q 005504 525 PIVYSTAIAGQSVDKIIVAAEMV 547 (693)
Q Consensus 525 piv~iSA~~g~gv~~L~~~i~~~ 547 (693)
+++++||++|.|++++++.+.+.
T Consensus 147 ~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 147 PVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred CEEEEecCCCCCHHHHHHHHHhh
Confidence 89999999999999999988653
No 38
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.84 E-value=5.3e-20 Score=203.73 Aligned_cols=160 Identities=34% Similarity=0.463 Sum_probs=128.5
Q ss_pred cCCcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHH
Q 005504 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (693)
Q Consensus 369 ~~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (693)
...++|+++|.||||||||+|+|++.+..++++++|||++.....+.+ +|..+.+|||||+++.. +..+...+
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~-~g~~v~l~DTaG~~~~~------~~ie~~gi 273 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFEL-NGILIKLLDTAGIREHA------DFVERLGI 273 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEE-CCEEEEEeeCCCcccch------hHHHHHHH
Confidence 345899999999999999999999988888999999999998888876 78899999999997642 23455556
Q ss_pred HHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcEEE
Q 005504 449 NRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVY 528 (693)
Q Consensus 449 ~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~piv~ 528 (693)
.++..+++.+|++++|+|++++.+.++. ++..+...++|+|+|+||+|+... .. . .+. ...+.+++.
T Consensus 274 ~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~-~~---~----~~~----~~~~~~~~~ 340 (442)
T TIGR00450 274 EKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKIN-SL---E----FFV----SSKVLNSSN 340 (442)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCCc-ch---h----hhh----hhcCCceEE
Confidence 6778889999999999999988877766 777776678999999999999643 11 1 111 112367899
Q ss_pred eccccCCCHHHHHHHHHHHHH
Q 005504 529 STAIAGQSVDKIIVAAEMVDK 549 (693)
Q Consensus 529 iSA~~g~gv~~L~~~i~~~~~ 549 (693)
+||++ .|++++++.+.+...
T Consensus 341 vSak~-~gI~~~~~~L~~~i~ 360 (442)
T TIGR00450 341 LSAKQ-LKIKALVDLLTQKIN 360 (442)
T ss_pred EEEec-CCHHHHHHHHHHHHH
Confidence 99998 589999988876643
No 39
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.84 E-value=5.5e-20 Score=206.69 Aligned_cols=162 Identities=28% Similarity=0.446 Sum_probs=128.2
Q ss_pred CcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHH
Q 005504 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (693)
Q Consensus 371 ~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (693)
.++|+|+|+||||||||+|+|++.....+.+.+|+|++.+...+.. ++..+.+|||||+.... ..........
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~-~~~~~~l~DT~G~~~~~------~~~~~~~~~~ 110 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEW-NGRRFTVVDTGGWEPDA------KGLQASVAEQ 110 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEE-CCcEEEEEeCCCcCCcc------hhHHHHHHHH
Confidence 4799999999999999999999987778999999999998887775 78899999999986321 1122223345
Q ss_pred HHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcEEEec
Q 005504 451 AFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYST 530 (693)
Q Consensus 451 ~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~piv~iS 530 (693)
+..+++.||++|+|+|++++.+..+..++.++...++|+|+|+||+|+..... . . .+ +...+....+++|
T Consensus 111 ~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~-~----~----~~-~~~~g~~~~~~iS 180 (472)
T PRK03003 111 AEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEA-D----A----AA-LWSLGLGEPHPVS 180 (472)
T ss_pred HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccch-h----h----HH-HHhcCCCCeEEEE
Confidence 56678999999999999999998888899999989999999999999854211 1 0 11 1112223457999
Q ss_pred cccCCCHHHHHHHHHHHHH
Q 005504 531 AIAGQSVDKIIVAAEMVDK 549 (693)
Q Consensus 531 A~~g~gv~~L~~~i~~~~~ 549 (693)
|++|.|+++|++.+.+...
T Consensus 181 A~~g~gi~eL~~~i~~~l~ 199 (472)
T PRK03003 181 ALHGRGVGDLLDAVLAALP 199 (472)
T ss_pred cCCCCCcHHHHHHHHhhcc
Confidence 9999999999999987653
No 40
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.83 E-value=1.2e-19 Score=172.12 Aligned_cols=154 Identities=42% Similarity=0.599 Sum_probs=123.4
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (693)
.+|+++|++|+|||||+|++++.....+.+.+++|.+.....+.. ++.++.+|||||+.+... ..+.....++
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~------~~~~~~~~~~ 74 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDI-GGIPVRLIDTAGIRETED------EIEKIGIERA 74 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEe-CCEEEEEEECCCcCCCcc------hHHHHHHHHH
Confidence 589999999999999999999987777888999999987777764 677999999999876421 2233444567
Q ss_pred HHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcEEEecc
Q 005504 452 FRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTA 531 (693)
Q Consensus 452 ~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~piv~iSA 531 (693)
...+..+|++++|+|+.++.+..+...+.. ..++|+++|+||+|+...... .......+++++||
T Consensus 75 ~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~~~-------------~~~~~~~~~~~~Sa 139 (157)
T cd04164 75 REAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDSEL-------------LSLLAGKPIIAISA 139 (157)
T ss_pred HHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCcccc-------------ccccCCCceEEEEC
Confidence 778899999999999998877777766554 568999999999999764321 12223578999999
Q ss_pred ccCCCHHHHHHHHHHH
Q 005504 532 IAGQSVDKIIVAAEMV 547 (693)
Q Consensus 532 ~~g~gv~~L~~~i~~~ 547 (693)
++|.|+++|++.+.+.
T Consensus 140 ~~~~~v~~l~~~l~~~ 155 (157)
T cd04164 140 KTGEGLDELKEALLEL 155 (157)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 9999999999998764
No 41
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.83 E-value=1.7e-19 Score=173.97 Aligned_cols=160 Identities=25% Similarity=0.356 Sum_probs=111.4
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (693)
++|+++|.+|||||||+|+|++... .+++++++|.+.....+.. ++..+.+|||||+.+...... ...+. .+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~-~~~~~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~--~~~~~----~~ 72 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP-EVAPYPFTTKSLFVGHFDY-KYLRWQVIDTPGLLDRPLEER--NTIEM----QA 72 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC-ccCCCCCcccceeEEEEcc-CceEEEEEECCCcCCccccCC--chHHH----HH
Confidence 4799999999999999999998753 4566788888877666654 567999999999854211100 01111 12
Q ss_pred HHHH-hcCCeEEEEecccccCC---HHHHHHHHHHHHh--CCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCc
Q 005504 452 FRAI-RRSDVVALVIEAMACIT---EQDCRIAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (693)
Q Consensus 452 ~~~i-~~aDvvllViDa~~~~~---~~d~~~~~~l~~~--~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~p 525 (693)
...+ ..+|++++|+|+++..+ .....++..+... ++|+|+|+||+|+....... + . +.+......+
T Consensus 73 ~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~---~----~-~~~~~~~~~~ 144 (168)
T cd01897 73 ITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLS---E----I-EEEEELEGEE 144 (168)
T ss_pred HHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHH---H----H-HHhhhhccCc
Confidence 2222 34689999999987533 2334567777665 79999999999996532211 1 1 1222334578
Q ss_pred EEEeccccCCCHHHHHHHHHHH
Q 005504 526 IVYSTAIAGQSVDKIIVAAEMV 547 (693)
Q Consensus 526 iv~iSA~~g~gv~~L~~~i~~~ 547 (693)
++++||++|.|++++++.+.+.
T Consensus 145 ~~~~Sa~~~~gi~~l~~~l~~~ 166 (168)
T cd01897 145 VLKISTLTEEGVDEVKNKACEL 166 (168)
T ss_pred eEEEEecccCCHHHHHHHHHHH
Confidence 9999999999999999988754
No 42
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.83 E-value=2.2e-19 Score=173.34 Aligned_cols=171 Identities=23% Similarity=0.287 Sum_probs=126.8
Q ss_pred cCCCCCCCCeEEEEcCCCCChhhHHHHhhcCc-eeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhh
Q 005504 156 GNVPEHLLPRVAIVGRPNVGKSALFNRLVGGN-RAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMED 234 (693)
Q Consensus 156 ~~~~~~~~~~V~ivG~~nvGKSsL~n~l~~~~-~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~ 234 (693)
...+....|.||++|++|||||||+|+|++++ -+.++.+||.|+..++..+ ++ .+.+||.||++-.....
T Consensus 17 ~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~--~~-~~~lVDlPGYGyAkv~k------ 87 (200)
T COG0218 17 KQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEV--DD-ELRLVDLPGYGYAKVPK------ 87 (200)
T ss_pred hhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEe--cC-cEEEEeCCCcccccCCH------
Confidence 34555678899999999999999999999976 5899999999999988544 33 38899999997532221
Q ss_pred hhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccC
Q 005504 235 LAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCE 314 (693)
Q Consensus 235 ~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D 314 (693)
...+.|...+.++++ .-.+-.++++++|+++++...|.++++|+.. .+.|+++|+||+|
T Consensus 88 --------------~~~e~w~~~i~~YL~-----~R~~L~~vvlliD~r~~~~~~D~em~~~l~~--~~i~~~vv~tK~D 146 (200)
T COG0218 88 --------------EVKEKWKKLIEEYLE-----KRANLKGVVLLIDARHPPKDLDREMIEFLLE--LGIPVIVVLTKAD 146 (200)
T ss_pred --------------HHHHHHHHHHHHHHh-----hchhheEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEccc
Confidence 122233322222222 1123578999999999999999999999998 5999999999999
Q ss_pred Cccchhhh--HHH---HHhcCC--C--CccccccCCCCHHHHHHHHHhhcc
Q 005504 315 SPRKGIMQ--VSE---FWSLGF--S--PLPISAISGTGTGELLDLVCSELK 356 (693)
Q Consensus 315 ~~~~~~~~--~~~---~~~~g~--~--~v~iSA~~g~gi~~Ll~~i~~~l~ 356 (693)
........ ... .....+ . ++..|+..+.|+++|...|.+.+.
T Consensus 147 Ki~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 147 KLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred cCChhHHHHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhh
Confidence 98753321 111 112222 2 678999999999999999988765
No 43
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.83 E-value=1.3e-19 Score=179.50 Aligned_cols=161 Identities=22% Similarity=0.262 Sum_probs=115.2
Q ss_pred cEEEeecCCCCChhhHHHHHhcC------CCceecCCCCcccceEEEEEeCC-------------CCCeEEEEeCccccc
Q 005504 372 PAIAIVGRPNVGKSSILNALVGE------DRTIVSPISGTTRDAIDTEFTGP-------------EGQKFRLIDTAGIRK 432 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~------~~~~v~~~~gtT~d~~~~~~~~~-------------~g~~i~liDTpG~~~ 432 (693)
++|+++|++|+|||||+++|++. +.......+|+|++.....+... ++..+.+|||||+.+
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 47999999999999999999973 22334445688887765544431 256899999999843
Q ss_pred hhhhccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcch-hhHHHHH
Q 005504 433 RAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQ-QTATYYE 511 (693)
Q Consensus 433 ~~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~-~~~~~~~ 511 (693)
+ ...++..+..+|++++|+|+.++.+.++...+......++|+++|+||+|+...... ...+++.
T Consensus 81 ~--------------~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~ 146 (192)
T cd01889 81 L--------------IRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMK 146 (192)
T ss_pred H--------------HHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHH
Confidence 2 234455678899999999999988777766555555568999999999999743221 1122233
Q ss_pred HHHHHHHhc--CCCCcEEEeccccCCCHHHHHHHHHH
Q 005504 512 QDVREKLRA--LDWAPIVYSTAIAGQSVDKIIVAAEM 546 (693)
Q Consensus 512 ~~i~~~l~~--~~~~piv~iSA~~g~gv~~L~~~i~~ 546 (693)
+.+...+.. ....+++++||++|.|+++|++.+..
T Consensus 147 ~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~ 183 (192)
T cd01889 147 KKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNN 183 (192)
T ss_pred HHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHh
Confidence 333333321 23578999999999999999988864
No 44
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.83 E-value=5.7e-20 Score=184.57 Aligned_cols=153 Identities=20% Similarity=0.234 Sum_probs=115.5
Q ss_pred EEEeecCCCCChhhHHHHHhcCCCceecC------------------------------CCCcccceEEEEEeCCCCCeE
Q 005504 373 AIAIVGRPNVGKSSILNALVGEDRTIVSP------------------------------ISGTTRDAIDTEFTGPEGQKF 422 (693)
Q Consensus 373 ~I~ivG~~n~GKSSLin~llg~~~~~v~~------------------------------~~gtT~d~~~~~~~~~~g~~i 422 (693)
+|+++|++|+|||||+|+|++....+++. ..|+|++.....+.. ++.++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST-PKRKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec-CCceE
Confidence 58999999999999999999765554421 168999998888875 78899
Q ss_pred EEEeCccccchhhhccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCC-cEEEEEeccCCCCC
Q 005504 423 RLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGK-GCLIVVNKWDTIPN 501 (693)
Q Consensus 423 ~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~-p~Ivv~NK~Dl~~~ 501 (693)
.||||||+.++. ..+..+++.+|++|+|+|++.+...++..++.++...++ ++|+|+||+|+...
T Consensus 80 ~liDTpG~~~~~--------------~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~ 145 (208)
T cd04166 80 IIADTPGHEQYT--------------RNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDY 145 (208)
T ss_pred EEEECCcHHHHH--------------HHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccC
Confidence 999999986542 124456789999999999999988888777777777775 47789999999643
Q ss_pred cchhhHHHHHHHHHHHHhcCC--CCcEEEeccccCCCHHHHH
Q 005504 502 KNQQTATYYEQDVREKLRALD--WAPIVYSTAIAGQSVDKII 541 (693)
Q Consensus 502 ~~~~~~~~~~~~i~~~l~~~~--~~piv~iSA~~g~gv~~L~ 541 (693)
. ......+...+.+.+..++ ..+++++||++|.|+++..
T Consensus 146 ~-~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~~ 186 (208)
T cd04166 146 S-EEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSRS 186 (208)
T ss_pred C-HHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccCC
Confidence 2 2223334455555555444 3569999999999988543
No 45
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.83 E-value=1.8e-19 Score=199.46 Aligned_cols=172 Identities=20% Similarity=0.224 Sum_probs=125.2
Q ss_pred CcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHH
Q 005504 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (693)
Q Consensus 371 ~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (693)
...|+|||.||||||||+|+|++.. ..++++++||+++....+.. ++..+++|||||+..... ........
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~ak-pkIadypfTTl~P~lGvv~~-~~~~f~laDtPGliegas-------~g~gLg~~ 229 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAK-PKIADYPFTTLVPNLGVVQA-GDTRFTVADVPGLIPGAS-------EGKGLGLD 229 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCC-ccccccCcccccceEEEEEE-CCeEEEEEECCCCccccc-------hhhHHHHH
Confidence 3689999999999999999999875 45799999999999988876 567899999999865321 12233456
Q ss_pred HHHHHhcCCeEEEEecccccC----CHHHHH-HHHHHH--------------HhCCcEEEEEeccCCCCCcchhhHHHHH
Q 005504 451 AFRAIRRSDVVALVIEAMACI----TEQDCR-IAERIE--------------QEGKGCLIVVNKWDTIPNKNQQTATYYE 511 (693)
Q Consensus 451 ~~~~i~~aDvvllViDa~~~~----~~~d~~-~~~~l~--------------~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~ 511 (693)
+++++++||++|+|+|++... ..++.. +...+. -.++|+|||+||+|+.+.. .. .
T Consensus 230 fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~--el----~ 303 (500)
T PRK12296 230 FLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAR--EL----A 303 (500)
T ss_pred HHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhH--HH----H
Confidence 788999999999999997421 112222 222221 2368999999999996432 11 1
Q ss_pred HHHHHHHhcCCCCcEEEeccccCCCHHHHHHHHHHHHHHhhccCCch
Q 005504 512 QDVREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVDKERSRRLSTA 558 (693)
Q Consensus 512 ~~i~~~l~~~~~~piv~iSA~~g~gv~~L~~~i~~~~~~~~~~i~t~ 558 (693)
+.+...+... ..+++++||+++.|+++|+.++.+....+..+.++.
T Consensus 304 e~l~~~l~~~-g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r~~~~~~ 349 (500)
T PRK12296 304 EFVRPELEAR-GWPVFEVSAASREGLRELSFALAELVEEARAAEPEA 349 (500)
T ss_pred HHHHHHHHHc-CCeEEEEECCCCCCHHHHHHHHHHHHHhhhcccCcc
Confidence 2222333332 468999999999999999999998887766554443
No 46
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.82 E-value=2e-19 Score=192.17 Aligned_cols=165 Identities=27% Similarity=0.312 Sum_probs=124.9
Q ss_pred CCCCeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEe-cCeeEEEEecCCcccccCCchhhhhhhhhhh
Q 005504 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW-GEHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (693)
Q Consensus 161 ~~~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~-~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~ 239 (693)
...+.|+|||.||||||||+|+|++.+ +.++++|++|++++.+.+.+ ++..+.++||||+.........
T Consensus 156 k~~adVglVG~PNaGKSTLln~ls~a~-~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~g--------- 225 (335)
T PRK12299 156 KLLADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAG--------- 225 (335)
T ss_pred cccCCEEEEcCCCCCHHHHHHHHHcCC-CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCcccc---------
Confidence 345789999999999999999999876 56899999999999999988 5678999999999753222111
Q ss_pred cccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH-HHHHHHHhh---cCCCcEEEEecccCC
Q 005504 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN---YMDKFIILAVNKCES 315 (693)
Q Consensus 240 ~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~-~i~~~L~~~---~~~~p~ivv~NK~D~ 315 (693)
+..++.++++.|+++++|+|+++..+.++. .+.+.|... ..++|+++|+||+|+
T Consensus 226 ----------------------Lg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL 283 (335)
T PRK12299 226 ----------------------LGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDL 283 (335)
T ss_pred ----------------------HHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECccc
Confidence 235677889999999999999865444333 344444432 136899999999998
Q ss_pred ccchhhh---HHHH-HhcCCCCccccccCCCCHHHHHHHHHhhccc
Q 005504 316 PRKGIMQ---VSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (693)
Q Consensus 316 ~~~~~~~---~~~~-~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l~~ 357 (693)
....... ...+ ...+..++++||.++.|+++|++.|.+.+++
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 284 LDEEEEREKRAALELAALGGPVFLISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred CCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 7543211 1112 2345678999999999999999999988764
No 47
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.82 E-value=2.6e-19 Score=172.77 Aligned_cols=161 Identities=26% Similarity=0.355 Sum_probs=113.5
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhcccC
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (693)
|+|+++|++|||||||+|+|.+.+ ..+...+++|.+.......+.+..+.+|||||+.+.......
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~------------- 66 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAK-PEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERN------------- 66 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCC-CccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCc-------------
Confidence 579999999999999999999976 345667788888888887888899999999998642111100
Q ss_pred CCCchhhHHHHHhcchHHHHHHHHHHH-HhcCeEEEEEeCCCCCC---HHHHHHHHHHHhhcCCCcEEEEecccCCccch
Q 005504 244 EGIPLATREAAVARMPSMIERQATAAI-EESCVIIFLVDGQAGLT---AADEEIADWLRKNYMDKFIILAVNKCESPRKG 319 (693)
Q Consensus 244 ~g~~~~~~~~~~~~~~~~i~~~~~~~i-~~adiil~VvD~~~~~~---~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~ 319 (693)
.+..+...++ ..+|++|+|+|+++... .....+.+.+++...+.|+++|+||+|+....
T Consensus 67 -----------------~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~ 129 (168)
T cd01897 67 -----------------TIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFE 129 (168)
T ss_pred -----------------hHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchh
Confidence 0111222222 23689999999987533 22234566665533478999999999987543
Q ss_pred hhh-HHHHHh-cCCCCccccccCCCCHHHHHHHHHhhc
Q 005504 320 IMQ-VSEFWS-LGFSPLPISAISGTGTGELLDLVCSEL 355 (693)
Q Consensus 320 ~~~-~~~~~~-~g~~~v~iSA~~g~gi~~Ll~~i~~~l 355 (693)
... ...+.. .+..++++||++|.|++++++.|.+.+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 130 DLSEIEEEEELEGEEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred hHHHHHHhhhhccCceEEEEecccCCHHHHHHHHHHHh
Confidence 221 122333 244789999999999999999998764
No 48
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.82 E-value=3.1e-19 Score=178.50 Aligned_cols=164 Identities=26% Similarity=0.289 Sum_probs=116.3
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCe-eEEEEecCCcccccCCchhhhhhhhhh
Q 005504 160 EHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH-EFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (693)
Q Consensus 160 ~~~~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~-~~~lvDTpG~~~~~~~~~~~~~~~~~~ 238 (693)
+...++|+|+|++|||||||+|+|++.. ..+.+.++.|.+.....+.+.+. .+.+|||||+.... ....
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--~~~~------- 107 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGAD-VYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDL--PHQL------- 107 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcch-hccCCccceeccceeEEEEecCCceEEEeCCCccccCC--CHHH-------
Confidence 3456899999999999999999999975 44556677787777777777665 89999999985411 1100
Q ss_pred hcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH-HHHHHHHhh-cCCCcEEEEecccCCc
Q 005504 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESP 316 (693)
Q Consensus 239 ~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~-~i~~~L~~~-~~~~p~ivv~NK~D~~ 316 (693)
...+ ......+..+|++++|+|++++....+. .+.++++.. ..++|+++|+||+|+.
T Consensus 108 --------------------~~~~-~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~ 166 (204)
T cd01878 108 --------------------VEAF-RSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLL 166 (204)
T ss_pred --------------------HHHH-HHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccC
Confidence 0111 1223456789999999999987665543 344555442 1368999999999997
Q ss_pred cchhhhHHHHHhcCCCCccccccCCCCHHHHHHHHHhhc
Q 005504 317 RKGIMQVSEFWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (693)
Q Consensus 317 ~~~~~~~~~~~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l 355 (693)
...... ..+...+.+++++||.+|.|++++++.|.+.+
T Consensus 167 ~~~~~~-~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 167 DDEELE-ERLEAGRPDAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred ChHHHH-HHhhcCCCceEEEEcCCCCCHHHHHHHHHhhC
Confidence 644322 12223344789999999999999999987653
No 49
>PRK11058 GTPase HflX; Provisional
Probab=99.82 E-value=2.4e-19 Score=197.39 Aligned_cols=162 Identities=19% Similarity=0.246 Sum_probs=119.9
Q ss_pred CCcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 370 ~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
..++|+++|.||||||||+|+|++.+.. +.+.+|+|+|+....+.++++..+.+|||||+.+.... +.++. ..
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~----~lve~--f~ 268 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPH----DLVAA--FK 268 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCH----HHHHH--HH
Confidence 3479999999999999999999998755 88999999999887777645458999999998553110 11222 34
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHHH----HHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCc
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDCR----IAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~~----~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~p 525 (693)
+++..++.||++|+|+|++++.+..+.. ++..+...++|+++|+||+|+..... . ... .. .. +.+
T Consensus 269 ~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~-~---~~~----~~--~~-~~~ 337 (426)
T PRK11058 269 ATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE-P---RID----RD--EE-NKP 337 (426)
T ss_pred HHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh-H---HHH----HH--hc-CCC
Confidence 5677889999999999999886666543 34444445799999999999964311 1 010 00 11 234
Q ss_pred -EEEeccccCCCHHHHHHHHHHHHH
Q 005504 526 -IVYSTAIAGQSVDKIIVAAEMVDK 549 (693)
Q Consensus 526 -iv~iSA~~g~gv~~L~~~i~~~~~ 549 (693)
++++||++|.|+++|++.+.+...
T Consensus 338 ~~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 338 IRVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred ceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 588999999999999999987653
No 50
>PRK00089 era GTPase Era; Reviewed
Probab=99.82 E-value=2.8e-19 Score=189.04 Aligned_cols=162 Identities=33% Similarity=0.530 Sum_probs=128.9
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhcccC
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (693)
..|+++|+||||||||+|+|+|.+.+.+++.+.+|++...+....++..+.+|||||+.....
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~----------------- 68 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKR----------------- 68 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchh-----------------
Confidence 469999999999999999999999889999999999988777666778999999999864221
Q ss_pred CCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCccc-h-hh
Q 005504 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRK-G-IM 321 (693)
Q Consensus 244 ~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~-~-~~ 321 (693)
.+.+.+...+..++..+|+++||+|+..+++..+..+++.++. .++|+++|+||+|+... . ..
T Consensus 69 -------------~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~--~~~pvilVlNKiDl~~~~~~l~ 133 (292)
T PRK00089 69 -------------ALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKK--VKTPVILVLNKIDLVKDKEELL 133 (292)
T ss_pred -------------HHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhh--cCCCEEEEEECCcCCCCHHHHH
Confidence 1122344566778899999999999998888888888888875 47899999999999732 2 11
Q ss_pred hHHHHHh--cCC-CCccccccCCCCHHHHHHHHHhhccc
Q 005504 322 QVSEFWS--LGF-SPLPISAISGTGTGELLDLVCSELKK 357 (693)
Q Consensus 322 ~~~~~~~--~g~-~~v~iSA~~g~gi~~Ll~~i~~~l~~ 357 (693)
...+.+. .++ .++++||.+|.|+++|++.|.+.++.
T Consensus 134 ~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 134 PLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLPE 172 (292)
T ss_pred HHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCCC
Confidence 2222222 233 68999999999999999999998874
No 51
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.82 E-value=2.2e-19 Score=171.03 Aligned_cols=155 Identities=21% Similarity=0.339 Sum_probs=113.6
Q ss_pred eecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHHHHHHH
Q 005504 376 IVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAI 455 (693)
Q Consensus 376 ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i 455 (693)
++|.+|||||||+|++.+.. ..++.++|+|++.....+.+ ++..+.+|||||+.++.... .+......++..
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~-----~~~~~~~~~~~~- 72 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKL-GGKEIEIVDLPGTYSLSPYS-----EDEKVARDFLLG- 72 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEee-CCeEEEEEECCCccccCCCC-----hhHHHHHHHhcC-
Confidence 58999999999999999875 66788899999987777775 67799999999997753321 111111222222
Q ss_pred hcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcEEEeccccCC
Q 005504 456 RRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQ 535 (693)
Q Consensus 456 ~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~piv~iSA~~g~ 535 (693)
..+|++++|+|+.+. .....++..+.+.++|+++|+||+|+....... .. .+.+... .+.+++++||++|.
T Consensus 73 ~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~--~~-~~~~~~~----~~~~~~~iSa~~~~ 143 (158)
T cd01879 73 EKPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAEKRGIK--ID-LDKLSEL----LGVPVVPTSARKGE 143 (158)
T ss_pred CCCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhcccccch--hh-HHHHHHh----hCCCeEEEEccCCC
Confidence 589999999999874 344556667777899999999999997543211 11 1222222 24689999999999
Q ss_pred CHHHHHHHHHHH
Q 005504 536 SVDKIIVAAEMV 547 (693)
Q Consensus 536 gv~~L~~~i~~~ 547 (693)
|++++++.+.+.
T Consensus 144 ~~~~l~~~l~~~ 155 (158)
T cd01879 144 GIDELKDAIAEL 155 (158)
T ss_pred CHHHHHHHHHHH
Confidence 999999998765
No 52
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.82 E-value=5.3e-19 Score=170.32 Aligned_cols=158 Identities=18% Similarity=0.232 Sum_probs=114.5
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCC--CCCeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP--EGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~--~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
+.|+++|.+|+|||||+|+|++.... ....+++|.+.....+... .+..+.+|||||+.++...
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~------------- 66 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVA-AGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNM------------- 66 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccc-cccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHH-------------
Confidence 36999999999999999999976433 3344567766544445432 3678999999998553221
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHh-----cCCCC
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLR-----ALDWA 524 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~-----~~~~~ 524 (693)
....+..+|++++|+|++++...+....+..+...++|+++|+||+|+..... . .+...+..... .....
T Consensus 67 -~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~-~---~~~~~~~~~~~~~~~~~~~~~ 141 (168)
T cd01887 67 -RARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANP-E---RVKNELSELGLQGEDEWGGDV 141 (168)
T ss_pred -HHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccH-H---HHHHHHHHhhccccccccCcC
Confidence 12356789999999999988777777788888888999999999999864321 1 12222221111 11246
Q ss_pred cEEEeccccCCCHHHHHHHHHHHH
Q 005504 525 PIVYSTAIAGQSVDKIIVAAEMVD 548 (693)
Q Consensus 525 piv~iSA~~g~gv~~L~~~i~~~~ 548 (693)
+++++||++|.|+++|++.+.+..
T Consensus 142 ~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 142 QIVPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred cEEEeecccCCCHHHHHHHHHHhh
Confidence 899999999999999999997754
No 53
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.81 E-value=3.6e-19 Score=198.75 Aligned_cols=159 Identities=34% Similarity=0.442 Sum_probs=127.6
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (693)
++|+++|+||||||||+|+|++.....+++.+|+|++.....+.. ++..+.+|||||+.+.. ..........+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~-~~~~~~liDT~G~~~~~------~~~~~~~~~~~ 74 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEW-LGREFILIDTGGIEPDD------DGFEKQIREQA 74 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEE-CCcEEEEEECCCCCCcc------hhHHHHHHHHH
Confidence 589999999999999999999988778999999999998887775 67899999999997521 11222233456
Q ss_pred HHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcEEEecc
Q 005504 452 FRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTA 531 (693)
Q Consensus 452 ~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~piv~iSA 531 (693)
..+++.+|++|+|+|+.++.+..+..++.++.+.++|+|+|+||+|+.... . .+. .+..++...++++||
T Consensus 75 ~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~--~-------~~~-~~~~lg~~~~~~iSa 144 (435)
T PRK00093 75 ELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEE--A-------DAY-EFYSLGLGEPYPISA 144 (435)
T ss_pred HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccch--h-------hHH-HHHhcCCCCCEEEEe
Confidence 678899999999999999999999889999999999999999999974311 1 111 112233345899999
Q ss_pred ccCCCHHHHHHHHHHH
Q 005504 532 IAGQSVDKIIVAAEMV 547 (693)
Q Consensus 532 ~~g~gv~~L~~~i~~~ 547 (693)
++|.|++++++.+.+.
T Consensus 145 ~~g~gv~~l~~~I~~~ 160 (435)
T PRK00093 145 EHGRGIGDLLDAILEE 160 (435)
T ss_pred eCCCCHHHHHHHHHhh
Confidence 9999999999999773
No 54
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.81 E-value=1.8e-19 Score=188.64 Aligned_cols=162 Identities=25% Similarity=0.343 Sum_probs=123.7
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCccchhh-hHHHHH-hcCCCCccccccC
Q 005504 263 ERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM-QVSEFW-SLGFSPLPISAIS 340 (693)
Q Consensus 263 ~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~~~-~~~~~~-~~g~~~v~iSA~~ 340 (693)
.++....++.+|+||+|+|++.+.+..+..+.+++. ++|+|+|+||+|+...... ...+++ ..+..++++||.+
T Consensus 12 ~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~----~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~ 87 (276)
T TIGR03596 12 RREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRG----NKPRLIVLNKADLADPAVTKQWLKYFEEKGIKALAINAKK 87 (276)
T ss_pred HHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHC----CCCEEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEECCC
Confidence 367788999999999999999888887777777662 6899999999999654211 112223 2455789999999
Q ss_pred CCCHHHHHHHHHhhcccccCccchhhhccCCcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCC
Q 005504 341 GTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ 420 (693)
Q Consensus 341 g~gi~~Ll~~i~~~l~~~~~~~~~~~~~~~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~ 420 (693)
+.|+.+|++.|.+.+++...............+++++|.||||||||+|+|++.....+++.+|+|+......+ +.
T Consensus 88 ~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~----~~ 163 (276)
T TIGR03596 88 GKGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL----SD 163 (276)
T ss_pred cccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEe----CC
Confidence 99999999999888764321000000112457899999999999999999999988889999999998765443 23
Q ss_pred eEEEEeCccccc
Q 005504 421 KFRLIDTAGIRK 432 (693)
Q Consensus 421 ~i~liDTpG~~~ 432 (693)
.+.++||||+..
T Consensus 164 ~~~l~DtPG~~~ 175 (276)
T TIGR03596 164 GLELLDTPGILW 175 (276)
T ss_pred CEEEEECCCccc
Confidence 689999999954
No 55
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.81 E-value=4.2e-19 Score=173.27 Aligned_cols=157 Identities=20% Similarity=0.199 Sum_probs=111.0
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCce--------e------cCCCCcccceEEEEEeC----CCCCeEEEEeCccccch
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTI--------V------SPISGTTRDAIDTEFTG----PEGQKFRLIDTAGIRKR 433 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~--------v------~~~~gtT~d~~~~~~~~----~~g~~i~liDTpG~~~~ 433 (693)
++|+++|++|||||||+++|++..... . ....|+|.......+.+ ..+..+.+|||||+.++
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 379999999999999999999753221 1 11235666554433321 13457889999999764
Q ss_pred hhhccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHHHH
Q 005504 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQD 513 (693)
Q Consensus 434 ~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~ 513 (693)
.. .+.++++.+|++|+|+|++++.+.++...+..+...++|+++|+||+|+..... ....+.
T Consensus 81 ~~--------------~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~----~~~~~~ 142 (179)
T cd01890 81 SY--------------EVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADP----ERVKQQ 142 (179)
T ss_pred HH--------------HHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCH----HHHHHH
Confidence 22 234567899999999999998888887766667778999999999999864221 112233
Q ss_pred HHHHHhcCCCCcEEEeccccCCCHHHHHHHHHHH
Q 005504 514 VREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMV 547 (693)
Q Consensus 514 i~~~l~~~~~~piv~iSA~~g~gv~~L~~~i~~~ 547 (693)
+.+.+. +...+++++||++|.|+++|++.+.+.
T Consensus 143 ~~~~~~-~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 175 (179)
T cd01890 143 IEDVLG-LDPSEAILVSAKTGLGVEDLLEAIVER 175 (179)
T ss_pred HHHHhC-CCcccEEEeeccCCCCHHHHHHHHHhh
Confidence 333332 222359999999999999999988653
No 56
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.81 E-value=1.7e-19 Score=200.81 Aligned_cols=155 Identities=33% Similarity=0.437 Sum_probs=122.2
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhcccC
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (693)
++|+++|+||||||||+|+|++.+.+++.+.+|+|++.....+.++|..+.+|||||+.... +..+.
T Consensus 216 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~----~~ie~--------- 282 (449)
T PRK05291 216 LKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETD----DEVEK--------- 282 (449)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCc----cHHHH---------
Confidence 68999999999999999999998877899999999999999999999999999999986411 11110
Q ss_pred CCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCccchhhhH
Q 005504 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQV 323 (693)
Q Consensus 244 ~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~~~~~ 323 (693)
.-.+.+..++..+|++++|+|++++.+..+..++.. ..++|+++|+||+|+.......
T Consensus 283 -----------------~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~----~~~~piiiV~NK~DL~~~~~~~- 340 (449)
T PRK05291 283 -----------------IGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE----LKDKPVIVVLNKADLTGEIDLE- 340 (449)
T ss_pred -----------------HHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh----cCCCCcEEEEEhhhccccchhh-
Confidence 001345567899999999999998877665544333 2578999999999997543211
Q ss_pred HHHHhcCCCCccccccCCCCHHHHHHHHHhhcc
Q 005504 324 SEFWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (693)
Q Consensus 324 ~~~~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l~ 356 (693)
...+..++++||++|.|+++|++.|.+.+.
T Consensus 341 ---~~~~~~~i~iSAktg~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 341 ---EENGKPVIRISAKTGEGIDELREAIKELAF 370 (449)
T ss_pred ---hccCCceEEEEeeCCCCHHHHHHHHHHHHh
Confidence 223446899999999999999999987765
No 57
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.81 E-value=3.9e-19 Score=189.81 Aligned_cols=162 Identities=21% Similarity=0.312 Sum_probs=119.8
Q ss_pred CcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHH
Q 005504 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (693)
Q Consensus 371 ~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (693)
...|+|+|.||||||||+|+|.+.. ..++++++||+.+....+.+.++..+++|||||+.+.... .......
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~-~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~-------~~gLg~~ 228 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASE-------GAGLGHR 228 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCC-ccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcc-------cccHHHH
Confidence 3589999999999999999999874 4689999999999988887644489999999999653211 1123456
Q ss_pred HHHHHhcCCeEEEEeccccc---CCHHHH-HHHHHHHH-----hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcC
Q 005504 451 AFRAIRRSDVVALVIEAMAC---ITEQDC-RIAERIEQ-----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRAL 521 (693)
Q Consensus 451 ~~~~i~~aDvvllViDa~~~---~~~~d~-~~~~~l~~-----~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~ 521 (693)
+++++++||++|+|+|+++. ...++. .|.+++.. .++|+++|+||+|+..... .+++.+.+.+.+
T Consensus 229 flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~---~~~~~~~l~~~~--- 302 (329)
T TIGR02729 229 FLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE---LAELLKELKKAL--- 302 (329)
T ss_pred HHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH---HHHHHHHHHHHc---
Confidence 77889999999999999864 222333 35555543 3689999999999965321 222223332221
Q ss_pred CCCcEEEeccccCCCHHHHHHHHHHH
Q 005504 522 DWAPIVYSTAIAGQSVDKIIVAAEMV 547 (693)
Q Consensus 522 ~~~piv~iSA~~g~gv~~L~~~i~~~ 547 (693)
..+++++||+++.|+++|++.+.+.
T Consensus 303 -~~~vi~iSAktg~GI~eL~~~I~~~ 327 (329)
T TIGR02729 303 -GKPVFPISALTGEGLDELLYALAEL 327 (329)
T ss_pred -CCcEEEEEccCCcCHHHHHHHHHHH
Confidence 3689999999999999999998764
No 58
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.81 E-value=5.4e-19 Score=173.16 Aligned_cols=160 Identities=23% Similarity=0.295 Sum_probs=114.8
Q ss_pred cCCcEEEeecCCCCChhhHHHHHhcCC-CceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHh-
Q 005504 369 NRIPAIAIVGRPNVGKSSILNALVGED-RTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEAL- 446 (693)
Q Consensus 369 ~~~~~I~ivG~~n~GKSSLin~llg~~-~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~- 446 (693)
.+.++|+++|.+|+|||||+|+|++.. ...+++.+|+|++.....+ + ..+.+|||||+.....-. .....+
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~---~-~~~~liDtpG~~~~~~~~---~~~~~~~ 88 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV---N-DGFRLVDLPGYGYAKVSK---EEKEKWQ 88 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe---C-CcEEEEeCCCCccccCCh---hHHHHHH
Confidence 455899999999999999999999875 4567888999987654433 2 369999999975421100 000111
Q ss_pred -HHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCC-CC
Q 005504 447 -SVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD-WA 524 (693)
Q Consensus 447 -~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~-~~ 524 (693)
.....++....+|++++|+|+.++++..+..+++.+...++|+++|+||+|+..... .+...+.+++.+.... ..
T Consensus 89 ~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~---~~~~~~~i~~~l~~~~~~~ 165 (179)
T TIGR03598 89 KLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSE---LNKQLKKIKKALKKDADDP 165 (179)
T ss_pred HHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHH---HHHHHHHHHHHHhhccCCC
Confidence 111222333457899999999999999999888888888999999999999975321 2234455666665543 35
Q ss_pred cEEEeccccCCCHH
Q 005504 525 PIVYSTAIAGQSVD 538 (693)
Q Consensus 525 piv~iSA~~g~gv~ 538 (693)
+++++||++|.|++
T Consensus 166 ~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 166 SVQLFSSLKKTGID 179 (179)
T ss_pred ceEEEECCCCCCCC
Confidence 89999999999973
No 59
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.81 E-value=1.6e-18 Score=165.46 Aligned_cols=164 Identities=33% Similarity=0.457 Sum_probs=123.2
Q ss_pred CcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHH
Q 005504 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (693)
Q Consensus 371 ~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (693)
..+|+++|.+|+|||||+|+|++.......+.+++++......... .+..+.+|||||+....... .......
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~------~~~~~~~ 75 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTD-DDAQIIFVDTPGIHKPKKKL------GERMVKA 75 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEc-CCeEEEEEECCCCCcchHHH------HHHHHHH
Confidence 3689999999999999999999987667777778887776655543 56789999999986542211 1122334
Q ss_pred HHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcEEEec
Q 005504 451 AFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYST 530 (693)
Q Consensus 451 ~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~piv~iS 530 (693)
....+..+|++++|+|++++.+..+..++..+...+.|+++|+||+|+.... ....++...+. ......+++.+|
T Consensus 76 ~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~---~~~~~~~~~~~s 150 (168)
T cd04163 76 AWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDK--EDLLPLLEKLK---ELGPFAEIFPIS 150 (168)
T ss_pred HHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccH--HHHHHHHHHHH---hccCCCceEEEE
Confidence 4567899999999999998877777788888888889999999999996322 11122222222 223357899999
Q ss_pred cccCCCHHHHHHHHHH
Q 005504 531 AIAGQSVDKIIVAAEM 546 (693)
Q Consensus 531 A~~g~gv~~L~~~i~~ 546 (693)
++++.|++++++.|.+
T Consensus 151 ~~~~~~~~~l~~~l~~ 166 (168)
T cd04163 151 ALKGENVDELLEEIVK 166 (168)
T ss_pred eccCCChHHHHHHHHh
Confidence 9999999999999865
No 60
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.81 E-value=3.7e-19 Score=170.29 Aligned_cols=151 Identities=27% Similarity=0.344 Sum_probs=115.3
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCccchhhhHH-HHH-hcCCCCccccccCC
Q 005504 264 RQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVS-EFW-SLGFSPLPISAISG 341 (693)
Q Consensus 264 ~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~~~~~~-~~~-~~g~~~v~iSA~~g 341 (693)
+.....++++|++|+|+|++++....+..+.+++.. .++|+++|+||+|+......... .+. ..+.+++++||.+|
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~~ 81 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLE--LGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKER 81 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHh--CCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEcccc
Confidence 334456667999999999998777767777777655 47899999999998653222111 122 23457899999999
Q ss_pred CCHHHHHHHHHhhcccccCccchhhhccCCcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCe
Q 005504 342 TGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQK 421 (693)
Q Consensus 342 ~gi~~Ll~~i~~~l~~~~~~~~~~~~~~~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~ 421 (693)
.|+++|++.|.+.++.. ....+++++|.+|+|||||+|+|.+.....+++.+|+|++.... .. +..
T Consensus 82 ~gi~~L~~~l~~~~~~~----------~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~--~~--~~~ 147 (156)
T cd01859 82 LGTKILRRTIKELAKID----------GKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLV--KI--TSK 147 (156)
T ss_pred ccHHHHHHHHHHHHhhc----------CCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEE--Ec--CCC
Confidence 99999999999888632 23468999999999999999999988777888999998764322 22 347
Q ss_pred EEEEeCccc
Q 005504 422 FRLIDTAGI 430 (693)
Q Consensus 422 i~liDTpG~ 430 (693)
+.+|||||+
T Consensus 148 ~~~~DtpGi 156 (156)
T cd01859 148 IYLLDTPGV 156 (156)
T ss_pred EEEEECcCC
Confidence 999999995
No 61
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.81 E-value=3.7e-19 Score=196.93 Aligned_cols=166 Identities=22% Similarity=0.293 Sum_probs=123.0
Q ss_pred CCCCeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005504 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (693)
Q Consensus 161 ~~~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~ 240 (693)
.....|+|||.||||||||+|+|++.+ ..++++|++|++++.+.+.+.+..|.++||||+........
T Consensus 157 k~~adV~LVG~PNAGKSTLln~Ls~ak-pkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~----------- 224 (500)
T PRK12296 157 KSVADVGLVGFPSAGKSSLISALSAAK-PKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGK----------- 224 (500)
T ss_pred cccceEEEEEcCCCCHHHHHHHHhcCC-ccccccCcccccceEEEEEECCeEEEEEECCCCccccchhh-----------
Confidence 345789999999999999999999986 56799999999999999999999999999999975221111
Q ss_pred ccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCC----CHHHH-----HHHHHHHh--------hcCC
Q 005504 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL----TAADE-----EIADWLRK--------NYMD 303 (693)
Q Consensus 241 ~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~----~~~d~-----~i~~~L~~--------~~~~ 303 (693)
-+...+.+++++||++|||+|++... ...+. ++..+... ...+
T Consensus 225 --------------------gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~ 284 (500)
T PRK12296 225 --------------------GLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAE 284 (500)
T ss_pred --------------------HHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcC
Confidence 12245667889999999999987411 11122 22222210 1247
Q ss_pred CcEEEEecccCCccchhhh--H-HHHHhcCCCCccccccCCCCHHHHHHHHHhhcccc
Q 005504 304 KFIILAVNKCESPRKGIMQ--V-SEFWSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (693)
Q Consensus 304 ~p~ivv~NK~D~~~~~~~~--~-~~~~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l~~~ 358 (693)
+|+|+|+||+|+....... . ..+...++.+++|||.++.|+++|+.+|.+.+...
T Consensus 285 kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 285 RPRLVVLNKIDVPDARELAEFVRPELEARGWPVFEVSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred CCEEEEEECccchhhHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 8999999999987532211 1 12334577899999999999999999999888753
No 62
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.81 E-value=1.6e-19 Score=172.83 Aligned_cols=151 Identities=25% Similarity=0.354 Sum_probs=111.1
Q ss_pred CeEEEEEeCCCCCCHHHHHHH-HHHHhhcCCCcEEEEecccCCccchhh-hHH-HHHhc-CCCCccccccCCCCHHHHHH
Q 005504 274 CVIIFLVDGQAGLTAADEEIA-DWLRKNYMDKFIILAVNKCESPRKGIM-QVS-EFWSL-GFSPLPISAISGTGTGELLD 349 (693)
Q Consensus 274 diil~VvD~~~~~~~~d~~i~-~~L~~~~~~~p~ivv~NK~D~~~~~~~-~~~-~~~~~-g~~~v~iSA~~g~gi~~Ll~ 349 (693)
|++|+|+|++.+....+..+. .++.. .++|+|+|+||+|+...... ... .+... +..++++||.+|.|+++|++
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~--~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~ 78 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKE--KGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKES 78 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhc--CCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHHH
Confidence 789999999988777666666 45544 57999999999999754322 111 23233 33579999999999999999
Q ss_pred HHHhhcccccCccchhhhccCCcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCcc
Q 005504 350 LVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAG 429 (693)
Q Consensus 350 ~i~~~l~~~~~~~~~~~~~~~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG 429 (693)
.|.+...................+++++|.||+|||||+|+|++.....++..+|||++.....+ +..+.|+||||
T Consensus 79 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~----~~~~~liDtPG 154 (155)
T cd01849 79 AFTKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL----DNKIKLLDTPG 154 (155)
T ss_pred HHHHHhHHHHHHHHhccccccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe----cCCEEEEECCC
Confidence 98765432100000000123457899999999999999999999888889999999999877544 24699999999
Q ss_pred c
Q 005504 430 I 430 (693)
Q Consensus 430 ~ 430 (693)
+
T Consensus 155 ~ 155 (155)
T cd01849 155 I 155 (155)
T ss_pred C
Confidence 5
No 63
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.81 E-value=5.3e-19 Score=169.32 Aligned_cols=150 Identities=17% Similarity=0.218 Sum_probs=109.9
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceee--ecCCCCceeeeEEEEEEec-CeeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAI--VVDEPGVTRDRMYGRSFWG-EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~--v~~~~~~T~~~~~~~~~~~-~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (693)
.|+++|++|||||||+|+|++.+... ....+++|.+.......+. +..+.+|||||+..+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~----------------- 64 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKF----------------- 64 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHH-----------------
Confidence 58999999999999999999854222 2234577888877777776 789999999998531
Q ss_pred cCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCccchh-
Q 005504 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI- 320 (693)
Q Consensus 242 ~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~~- 320 (693)
...+..++..+|++++|+|++++...+....+.+++.. ..+|+++|+||+|+.....
T Consensus 65 ---------------------~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~-~~~~~ilv~NK~Dl~~~~~~ 122 (164)
T cd04171 65 ---------------------IKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELL-GIKRGLVVLTKADLVDEDWL 122 (164)
T ss_pred ---------------------HHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHh-CCCcEEEEEECccccCHHHH
Confidence 12344567889999999999987666666655555542 2349999999999975421
Q ss_pred ----hhHHHHHh----cCCCCccccccCCCCHHHHHHHHHh
Q 005504 321 ----MQVSEFWS----LGFSPLPISAISGTGTGELLDLVCS 353 (693)
Q Consensus 321 ----~~~~~~~~----~g~~~v~iSA~~g~gi~~Ll~~i~~ 353 (693)
....+.+. .+..++++||++|.|++++++.|.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 123 ELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred HHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 11122222 2457899999999999999988754
No 64
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.81 E-value=3.1e-19 Score=198.78 Aligned_cols=164 Identities=22% Similarity=0.367 Sum_probs=130.8
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (693)
.+||++|+||||||||+|+|+|.+ ..|+++||+|++...+.+.+ .|+.+.++|+||........ ++..+.+-
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~-q~VgNwpGvTVEkkeg~~~~-~~~~i~ivDLPG~YSL~~~S------~DE~Var~ 75 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGAN-QKVGNWPGVTVEKKEGKLKY-KGHEIEIVDLPGTYSLTAYS------EDEKVARD 75 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccC-ceecCCCCeeEEEEEEEEEe-cCceEEEEeCCCcCCCCCCC------chHHHHHH
Confidence 579999999999999999999984 77999999999999999996 78889999999998865432 22223332
Q ss_pred HHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcEEEecc
Q 005504 452 FRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTA 531 (693)
Q Consensus 452 ~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~piv~iSA 531 (693)
+-.-..+|++|.|+|+++- +.++.+.-++.+.|+|+|+++|++|..+.+....- .+.+.+.+ ++|++++||
T Consensus 76 ~ll~~~~D~ivnVvDAtnL--eRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID---~~~L~~~L----GvPVv~tvA 146 (653)
T COG0370 76 FLLEGKPDLIVNVVDATNL--ERNLYLTLQLLELGIPMILALNMIDEAKKRGIRID---IEKLSKLL----GVPVVPTVA 146 (653)
T ss_pred HHhcCCCCEEEEEcccchH--HHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCccc---HHHHHHHh----CCCEEEEEe
Confidence 2223678999999999874 77788888999999999999999998765443221 22333333 699999999
Q ss_pred ccCCCHHHHHHHHHHHHHHhh
Q 005504 532 IAGQSVDKIIVAAEMVDKERS 552 (693)
Q Consensus 532 ~~g~gv~~L~~~i~~~~~~~~ 552 (693)
++|.|++++++++.+..+...
T Consensus 147 ~~g~G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 147 KRGEGLEELKRAIIELAESKT 167 (653)
T ss_pred ecCCCHHHHHHHHHHhccccc
Confidence 999999999999987755443
No 65
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.81 E-value=6.8e-19 Score=192.66 Aligned_cols=161 Identities=23% Similarity=0.310 Sum_probs=120.4
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (693)
..|+|+|.||||||||+|+|++.+ ..++++++||+++....+.+.++..+++|||||+...... ........
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak-~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~-------~~gLg~~f 230 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAK-PKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASE-------GVGLGHQF 230 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCC-CccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccc-------cchHHHHH
Confidence 489999999999999999999876 4578999999999988877644789999999999653221 12234567
Q ss_pred HHHHhcCCeEEEEeccccc---CC-HHHHHHHHHHHH-----hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCC
Q 005504 452 FRAIRRSDVVALVIEAMAC---IT-EQDCRIAERIEQ-----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD 522 (693)
Q Consensus 452 ~~~i~~aDvvllViDa~~~---~~-~~d~~~~~~l~~-----~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~ 522 (693)
++++++||++|+|+|+++. .. .....|..++.. .++|+|||+||+|+... ... .+.+.+.+.
T Consensus 231 Lrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~e~----l~~l~~~l~--- 301 (424)
T PRK12297 231 LRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--EEN----LEEFKEKLG--- 301 (424)
T ss_pred HHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--HHH----HHHHHHHhC---
Confidence 8889999999999999743 22 223345566654 37899999999998432 111 122333332
Q ss_pred CCcEEEeccccCCCHHHHHHHHHHHHHH
Q 005504 523 WAPIVYSTAIAGQSVDKIIVAAEMVDKE 550 (693)
Q Consensus 523 ~~piv~iSA~~g~gv~~L~~~i~~~~~~ 550 (693)
.+++++||++|.|+++|++.+.+....
T Consensus 302 -~~i~~iSA~tgeGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 302 -PKVFPISALTGQGLDELLYAVAELLEE 328 (424)
T ss_pred -CcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 589999999999999999999876544
No 66
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.81 E-value=3.2e-19 Score=173.51 Aligned_cols=159 Identities=26% Similarity=0.295 Sum_probs=119.4
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCccchhh-hHHHHHhc-CCCCccccccC
Q 005504 263 ERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM-QVSEFWSL-GFSPLPISAIS 340 (693)
Q Consensus 263 ~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~~~-~~~~~~~~-g~~~v~iSA~~ 340 (693)
..++...+++||++|+|+|++.+....+..+.+.+ .++|+++|+||+|+...... ...+++.. +..++++||.+
T Consensus 10 ~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~iSa~~ 85 (171)
T cd01856 10 LRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL----GNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLFVNAKS 85 (171)
T ss_pred HHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh----cCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEEEECCC
Confidence 46678899999999999999987776655555554 35799999999999754322 12233333 34679999999
Q ss_pred CCCHHHHHHHHHhhcccccCccchhhhccCCcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCC
Q 005504 341 GTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ 420 (693)
Q Consensus 341 g~gi~~Ll~~i~~~l~~~~~~~~~~~~~~~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~ 420 (693)
+.|+++|.+.+.+.++...... ........++++++|.+|+|||||+|+|++.....+++.+|||++.....+. .
T Consensus 86 ~~gi~~L~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~----~ 160 (171)
T cd01856 86 GKGVKKLLKAAKKLLKDIEKLK-AKGLLPRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS----P 160 (171)
T ss_pred cccHHHHHHHHHHHHHHHhhhh-hcccCCCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec----C
Confidence 9999999999988765321100 0011233468999999999999999999998877889999999987665442 4
Q ss_pred eEEEEeCccc
Q 005504 421 KFRLIDTAGI 430 (693)
Q Consensus 421 ~i~liDTpG~ 430 (693)
.+.+|||||+
T Consensus 161 ~~~~iDtpG~ 170 (171)
T cd01856 161 GIYLLDTPGI 170 (171)
T ss_pred CEEEEECCCC
Confidence 6899999997
No 67
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.81 E-value=5.5e-19 Score=193.37 Aligned_cols=164 Identities=28% Similarity=0.362 Sum_probs=123.1
Q ss_pred CCCeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEec-CeeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005504 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG-EHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (693)
Q Consensus 162 ~~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~-~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~ 240 (693)
..+.|++||.||||||||+|+|++.+ +.++++|++|..++.+.+.+. +..+.++||||+........
T Consensus 157 ~~adVglVG~pNaGKSTLLn~Lt~ak-~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~----------- 224 (424)
T PRK12297 157 LLADVGLVGFPNVGKSTLLSVVSNAK-PKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGV----------- 224 (424)
T ss_pred ccCcEEEEcCCCCCHHHHHHHHHcCC-CccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccc-----------
Confidence 44689999999999999999999887 557899999999999988887 78999999999975222111
Q ss_pred ccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCC---CCHHH-HHHHHHHHhh---cCCCcEEEEeccc
Q 005504 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG---LTAAD-EEIADWLRKN---YMDKFIILAVNKC 313 (693)
Q Consensus 241 ~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~---~~~~d-~~i~~~L~~~---~~~~p~ivv~NK~ 313 (693)
-+..++.+++++|++++||+|++.. ....+ ..+.+.|... ..++|+++|+||+
T Consensus 225 --------------------gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~ 284 (424)
T PRK12297 225 --------------------GLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKM 284 (424)
T ss_pred --------------------hHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCC
Confidence 1235567888999999999998643 12222 3455555542 2478999999999
Q ss_pred CCccchhhhHHHHH-hcCCCCccccccCCCCHHHHHHHHHhhcccc
Q 005504 314 ESPRKGIMQVSEFW-SLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (693)
Q Consensus 314 D~~~~~~~~~~~~~-~~g~~~v~iSA~~g~gi~~Ll~~i~~~l~~~ 358 (693)
|+.... .....+. .++..++++||.+|.|+++|++.|.+.+.+.
T Consensus 285 DL~~~~-e~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 285 DLPEAE-ENLEEFKEKLGPKVFPISALTGQGLDELLYAVAELLEET 329 (424)
T ss_pred CCcCCH-HHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 985432 1222222 2346789999999999999999999887643
No 68
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.81 E-value=5e-19 Score=171.01 Aligned_cols=158 Identities=23% Similarity=0.325 Sum_probs=114.2
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCe-eEEEEecCCcccccCCchhhhhhhhhhhcccC
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH-EFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~-~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (693)
.|+++|++|||||||+|+|.+.+ ..++..+++|++...+.+.+++. .+.+|||||+.......+.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~-~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~------------- 67 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAK-PKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKG------------- 67 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCC-ccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCC-------------
Confidence 58999999999999999999876 46778888899888888888886 9999999998642211110
Q ss_pred CCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCC-CCHHH-HHHHHHHHhhc---CCCcEEEEecccCCccc
Q 005504 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG-LTAAD-EEIADWLRKNY---MDKFIILAVNKCESPRK 318 (693)
Q Consensus 244 ~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~-~~~~d-~~i~~~L~~~~---~~~p~ivv~NK~D~~~~ 318 (693)
+...+.+.+..+|++++|+|++++ -.... ..+.+.+.... .++|+++|+||+|+...
T Consensus 68 ------------------~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~ 129 (170)
T cd01898 68 ------------------LGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE 129 (170)
T ss_pred ------------------chHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc
Confidence 123445567789999999999976 23322 23444444321 36899999999998653
Q ss_pred hhhh--HHHHHhc--CCCCccccccCCCCHHHHHHHHHhh
Q 005504 319 GIMQ--VSEFWSL--GFSPLPISAISGTGTGELLDLVCSE 354 (693)
Q Consensus 319 ~~~~--~~~~~~~--g~~~v~iSA~~g~gi~~Ll~~i~~~ 354 (693)
.... ...+... +.+++++||++|.|++++++.|.+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 130 EELFELLKELLKELWGKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred hhhHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence 3211 1223332 4568999999999999999998765
No 69
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.81 E-value=9e-19 Score=174.48 Aligned_cols=170 Identities=16% Similarity=0.190 Sum_probs=111.3
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCC--CeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
.+|+++|.+|||||||++++++.+... ...|.++.+.....+.. +| ..+.+|||||+.++... ...+. ..
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~-~~~pt~~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~~~~~----~~~e~--~~ 72 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPE-EYIPTEHRRLYRPAVVL-SGRVYDLHILDVPNMQRYPGT----AGQEW--MD 72 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCc-ccCCccccccceeEEEE-CCEEEEEEEEeCCCcccCCcc----chhHH--HH
Confidence 379999999999999999999865432 23444433333223332 45 36789999998764311 11111 12
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHH------hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCC
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ------EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD 522 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~------~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~ 522 (693)
....+++.+|++|+|+|++++.+.+.. .|+..+.+ .++|+|+|+||+|+...... ..+ .+........
T Consensus 73 ~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~-~~~----~~~~~~~~~~ 147 (198)
T cd04142 73 PRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFA-PRH----VLSVLVRKSW 147 (198)
T ss_pred HHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccc-cHH----HHHHHHHHhc
Confidence 244567899999999999987655543 34454443 46899999999999653221 111 1222222223
Q ss_pred CCcEEEeccccCCCHHHHHHHHHHHHHHhhcc
Q 005504 523 WAPIVYSTAIAGQSVDKIIVAAEMVDKERSRR 554 (693)
Q Consensus 523 ~~piv~iSA~~g~gv~~L~~~i~~~~~~~~~~ 554 (693)
.++++++||++|.|+++||+.+.+..-.+.+.
T Consensus 148 ~~~~~e~Sak~g~~v~~lf~~i~~~~~~~~~~ 179 (198)
T cd04142 148 KCGYLECSAKYNWHILLLFKELLISATTRGRS 179 (198)
T ss_pred CCcEEEecCCCCCCHHHHHHHHHHHhhccCCC
Confidence 57999999999999999999988765544433
No 70
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.80 E-value=8.5e-19 Score=174.05 Aligned_cols=153 Identities=22% Similarity=0.227 Sum_probs=109.9
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceec---------------CCCCcccceEEEEEeCCCCCeEEEEeCccccchhhh
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVS---------------PISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAI 436 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~---------------~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~ 436 (693)
++|+++|.+|||||||+|+|++....... ...|+|.+.....+.. ++..+.+|||||+.++..
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~- 80 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTY-KDTKINIVDTPGHADFGG- 80 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEE-CCEEEEEEECCCcHHHHH-
Confidence 58999999999999999999963211111 2256777766666664 677999999999976532
Q ss_pred ccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHHHHHHH
Q 005504 437 ASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVRE 516 (693)
Q Consensus 437 ~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~ 516 (693)
....+++.+|++++|+|++++...+...++..+...++|+++|+||+|+...... ...+++.+
T Consensus 81 -------------~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~----~~~~~~~~ 143 (194)
T cd01891 81 -------------EVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPE----EVVDEVFD 143 (194)
T ss_pred -------------HHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHH----HHHHHHHH
Confidence 2344678999999999999877677777777777789999999999999653221 22233333
Q ss_pred HHhc------CCCCcEEEeccccCCCHHHHHHH
Q 005504 517 KLRA------LDWAPIVYSTAIAGQSVDKIIVA 543 (693)
Q Consensus 517 ~l~~------~~~~piv~iSA~~g~gv~~L~~~ 543 (693)
.+.. ....+++++||++|.|+.++-..
T Consensus 144 ~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~~~~ 176 (194)
T cd01891 144 LFIELGATEEQLDFPVLYASAKNGWASLNLEDP 176 (194)
T ss_pred HHHHhCCccccCccCEEEeehhccccccccccc
Confidence 3321 12468999999999998655433
No 71
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.80 E-value=1e-18 Score=174.81 Aligned_cols=160 Identities=25% Similarity=0.391 Sum_probs=113.2
Q ss_pred cCCcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHH
Q 005504 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (693)
Q Consensus 369 ~~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (693)
+..++|+++|++|||||||+|++++.. ..+.+.+++|.+.....+.+.++..+.+|||||+.+... .......
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~~~ 111 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGAD-VYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP------HQLVEAF 111 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcch-hccCCccceeccceeEEEEecCCceEEEeCCCccccCCC------HHHHHHH
Confidence 445899999999999999999999875 345566777877776666653444899999999854211 0011112
Q ss_pred HHHHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHH---hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005504 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (693)
Q Consensus 449 ~~~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~---~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~ 524 (693)
..+...+..+|++++|+|++++.+..+. .+...+.. .++|+++|+||+|+.+.... . ..+ .....
T Consensus 112 ~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~------~----~~~-~~~~~ 180 (204)
T cd01878 112 RSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL------E----ERL-EAGRP 180 (204)
T ss_pred HHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH------H----HHh-hcCCC
Confidence 3344557889999999999887665554 23344433 36899999999999653211 0 111 22356
Q ss_pred cEEEeccccCCCHHHHHHHHHH
Q 005504 525 PIVYSTAIAGQSVDKIIVAAEM 546 (693)
Q Consensus 525 piv~iSA~~g~gv~~L~~~i~~ 546 (693)
+++++||++|.|++++++.|.+
T Consensus 181 ~~~~~Sa~~~~gi~~l~~~L~~ 202 (204)
T cd01878 181 DAVFISAKTGEGLDELLEAIEE 202 (204)
T ss_pred ceEEEEcCCCCCHHHHHHHHHh
Confidence 8999999999999999998865
No 72
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.80 E-value=3.1e-19 Score=198.45 Aligned_cols=158 Identities=20% Similarity=0.271 Sum_probs=120.8
Q ss_pred cCCcEEEeecCCCCChhhHHHHHhcCCCceecC------------------------------CCCcccceEEEEEeCCC
Q 005504 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSP------------------------------ISGTTRDAIDTEFTGPE 418 (693)
Q Consensus 369 ~~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~------------------------------~~gtT~d~~~~~~~~~~ 418 (693)
.+.++|+++|++|+|||||+|+|+.....+... .+|+|+|.....+.. +
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~-~ 82 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET-D 82 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec-C
Confidence 345799999999999999999999654443221 579999999988885 7
Q ss_pred CCeEEEEeCccccchhhhccCCChhhHhHHHHHHHHHhcCCeEEEEecccc--cCCHHHHHHHHHHHHhCC-cEEEEEec
Q 005504 419 GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMA--CITEQDCRIAERIEQEGK-GCLIVVNK 495 (693)
Q Consensus 419 g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~--~~~~~d~~~~~~l~~~~~-p~Ivv~NK 495 (693)
+..+.||||||+.++.. .+...+..+|++++|+|+.+ ++..++...+..+...++ |+++|+||
T Consensus 83 ~~~i~liDtpG~~~~~~--------------~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK 148 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVK--------------NMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINK 148 (425)
T ss_pred CeEEEEEECCCcccchh--------------hHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEc
Confidence 88999999999866422 23445688999999999998 788888888877777776 69999999
Q ss_pred cCCCCCcchhhHHHHHHHHHHHHhcCC----CCcEEEeccccCCCHHHHHH
Q 005504 496 WDTIPNKNQQTATYYEQDVREKLRALD----WAPIVYSTAIAGQSVDKIIV 542 (693)
Q Consensus 496 ~Dl~~~~~~~~~~~~~~~i~~~l~~~~----~~piv~iSA~~g~gv~~L~~ 542 (693)
+|+... .........+++.+.+...+ ..+++++||++|.|++++.+
T Consensus 149 ~Dl~~~-~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 149 MDAVNY-DEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred cccccc-cHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 999752 22223344555655555443 36899999999999987653
No 73
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.80 E-value=3.3e-19 Score=187.65 Aligned_cols=162 Identities=25% Similarity=0.356 Sum_probs=123.4
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCccchhh-hHHHHH-hcCCCCccccccCC
Q 005504 264 RQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM-QVSEFW-SLGFSPLPISAISG 341 (693)
Q Consensus 264 ~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~~~-~~~~~~-~~g~~~v~iSA~~g 341 (693)
++....++.+|+||+|+|++.+++..+..+.+.+. ++|+++|+||+|+...... ...+++ ..+..++++||.++
T Consensus 16 ~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~----~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~vSa~~~ 91 (287)
T PRK09563 16 REIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG----NKPRLLILNKSDLADPEVTKKWIEYFEEQGIKALAINAKKG 91 (287)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC----CCCEEEEEEchhcCCHHHHHHHHHHHHHcCCeEEEEECCCc
Confidence 56778899999999999999988877776666653 6899999999999653211 222333 34566899999999
Q ss_pred CCHHHHHHHHHhhcccccCccchhhhccCCcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCe
Q 005504 342 TGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQK 421 (693)
Q Consensus 342 ~gi~~Ll~~i~~~l~~~~~~~~~~~~~~~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~ 421 (693)
.|+.+|++.|.+.++................+++++|.||||||||+|+|++.....+++.+|+|++.....+ +..
T Consensus 92 ~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~----~~~ 167 (287)
T PRK09563 92 QGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL----GKG 167 (287)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe----CCc
Confidence 9999999999888764321000000123457999999999999999999999988899999999998754332 346
Q ss_pred EEEEeCccccch
Q 005504 422 FRLIDTAGIRKR 433 (693)
Q Consensus 422 i~liDTpG~~~~ 433 (693)
+.|+||||+...
T Consensus 168 ~~l~DtPGi~~~ 179 (287)
T PRK09563 168 LELLDTPGILWP 179 (287)
T ss_pred EEEEECCCcCCC
Confidence 899999999653
No 74
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.80 E-value=4.3e-19 Score=167.07 Aligned_cols=135 Identities=30% Similarity=0.389 Sum_probs=109.1
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCccchhh-hHHH-HHhcCCCCccccccCC
Q 005504 264 RQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM-QVSE-FWSLGFSPLPISAISG 341 (693)
Q Consensus 264 ~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~~~-~~~~-~~~~g~~~v~iSA~~g 341 (693)
+++.++++++|++++|+|++.+....+..+.+++.....++|+++|+||+|+..+... .... +...+..++++||.+|
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~~ 82 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALKE 82 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecCC
Confidence 5677899999999999999999888888899998763247899999999999654322 2222 3345667899999987
Q ss_pred CCHHHHHHHHHhhcccccCccchhhhccCCcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCe
Q 005504 342 TGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQK 421 (693)
Q Consensus 342 ~gi~~Ll~~i~~~l~~~~~~~~~~~~~~~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~ 421 (693)
.+ +++++|.||+|||||+|+|++.....++..+|+|++.....+. ..
T Consensus 83 ~~-----------------------------~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~----~~ 129 (141)
T cd01857 83 NA-----------------------------TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLT----PT 129 (141)
T ss_pred Cc-----------------------------EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeC----CC
Confidence 54 6899999999999999999998888899999999987654442 26
Q ss_pred EEEEeCcccc
Q 005504 422 FRLIDTAGIR 431 (693)
Q Consensus 422 i~liDTpG~~ 431 (693)
+.+|||||+.
T Consensus 130 ~~i~DtpG~~ 139 (141)
T cd01857 130 ITLCDCPGLV 139 (141)
T ss_pred EEEEECCCcC
Confidence 8999999973
No 75
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.80 E-value=1.3e-18 Score=170.79 Aligned_cols=157 Identities=21% Similarity=0.280 Sum_probs=117.1
Q ss_pred EEEeecCCCCChhhHHHHHhcCCCceec---------------CCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhc
Q 005504 373 AIAIVGRPNVGKSSILNALVGEDRTIVS---------------PISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIA 437 (693)
Q Consensus 373 ~I~ivG~~n~GKSSLin~llg~~~~~v~---------------~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~ 437 (693)
+|+++|.+|+|||||+|+|++....... ...|+|.+.....+.. .+..+.+|||||+.++.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~~--- 76 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW-PDRRVNFIDTPGHEDFS--- 76 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee-CCEEEEEEeCCCcHHHH---
Confidence 4899999999999999999986544221 2235666655555554 56789999999986531
Q ss_pred cCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHHHHHHHH
Q 005504 438 SSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREK 517 (693)
Q Consensus 438 ~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~ 517 (693)
.....+++.+|++++|+|+.++...+...++..+...++|+++|+||+|+...... ....+.+.+.
T Consensus 77 -----------~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~---~~~~~~~~~~ 142 (189)
T cd00881 77 -----------SEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDL---EEVLREIKEL 142 (189)
T ss_pred -----------HHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcH---HHHHHHHHHH
Confidence 12344678999999999999988888888888888889999999999999753221 2223334444
Q ss_pred HhcC-------------CCCcEEEeccccCCCHHHHHHHHHHH
Q 005504 518 LRAL-------------DWAPIVYSTAIAGQSVDKIIVAAEMV 547 (693)
Q Consensus 518 l~~~-------------~~~piv~iSA~~g~gv~~L~~~i~~~ 547 (693)
+... ...+++++||++|.|++++++.+.+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~ 185 (189)
T cd00881 143 LGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEH 185 (189)
T ss_pred HccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhh
Confidence 4332 35789999999999999999988754
No 76
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.80 E-value=8.1e-19 Score=187.39 Aligned_cols=163 Identities=27% Similarity=0.356 Sum_probs=121.6
Q ss_pred CCCCeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC-eeEEEEecCCcccccCCchhhhhhhhhhh
Q 005504 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE-HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (693)
Q Consensus 161 ~~~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~-~~~~lvDTpG~~~~~~~~~~~~~~~~~~~ 239 (693)
...+.|+|||.||||||||+|+|++.+ ..++++|++|..+..+.+.+.+ ..+.++||||+.........
T Consensus 155 k~~adV~lvG~pnaGKSTLl~~lt~~~-~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~g--------- 224 (329)
T TIGR02729 155 KLLADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAG--------- 224 (329)
T ss_pred eccccEEEEcCCCCCHHHHHHHHhcCC-ccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCccccc---------
Confidence 345789999999999999999999876 5689999999999999998877 89999999999753221111
Q ss_pred cccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCC---CCHHHH-HHHHHHHhh---cCCCcEEEEecc
Q 005504 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG---LTAADE-EIADWLRKN---YMDKFIILAVNK 312 (693)
Q Consensus 240 ~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~---~~~~d~-~i~~~L~~~---~~~~p~ivv~NK 312 (693)
+..++.++++.|+++|+|+|++.. ....+. .+.+.|... ..++|+++|+||
T Consensus 225 ----------------------Lg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK 282 (329)
T TIGR02729 225 ----------------------LGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNK 282 (329)
T ss_pred ----------------------HHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeC
Confidence 235667888999999999998864 122222 333444332 247899999999
Q ss_pred cCCccchhh-hH-HHHH-hcCCCCccccccCCCCHHHHHHHHHhhc
Q 005504 313 CESPRKGIM-QV-SEFW-SLGFSPLPISAISGTGTGELLDLVCSEL 355 (693)
Q Consensus 313 ~D~~~~~~~-~~-~~~~-~~g~~~v~iSA~~g~gi~~Ll~~i~~~l 355 (693)
+|+...... .. ..+. .++..++++||.++.|+++|++.|.+.+
T Consensus 283 ~DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 283 IDLLDEEELAELLKELKKALGKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred ccCCChHHHHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 998754321 11 1122 2456789999999999999999998765
No 77
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.80 E-value=2.6e-18 Score=175.84 Aligned_cols=162 Identities=28% Similarity=0.407 Sum_probs=129.5
Q ss_pred CCCCeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005504 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (693)
Q Consensus 161 ~~~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~ 240 (693)
...|+|+|.|+||||||||++++++.+ ..+.+||+||+..+.+.+..++.++++|||||+.+....+.
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT~Ak-pEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~Er----------- 233 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLTTAK-PEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEER----------- 233 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHhcCC-CccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHh-----------
Confidence 467899999999999999999999987 77899999999999999999999999999999986332221
Q ss_pred ccCCCCchhhHHHHHhcchHHHHHHHHHHHHh-cCeEEEEEeCC--CCCCHHHH-HHHHHHHhhcCCCcEEEEecccCCc
Q 005504 241 IGMEGIPLATREAAVARMPSMIERQATAAIEE-SCVIIFLVDGQ--AGLTAADE-EIADWLRKNYMDKFIILAVNKCESP 316 (693)
Q Consensus 241 ~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~-adiil~VvD~~--~~~~~~d~-~i~~~L~~~~~~~p~ivv~NK~D~~ 316 (693)
..|++|+..|++. .++|||++|.+ +|++.+.+ .+++.++..+ +.|+++|+||+|..
T Consensus 234 -------------------N~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f-~~p~v~V~nK~D~~ 293 (346)
T COG1084 234 -------------------NEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF-KAPIVVVINKIDIA 293 (346)
T ss_pred -------------------cHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc-CCCeEEEEeccccc
Confidence 1367888888887 79999999976 46776654 6777787764 48999999999988
Q ss_pred cchhhhHHH--HHhcCC-CCccccccCCCCHHHHHHHHHhh
Q 005504 317 RKGIMQVSE--FWSLGF-SPLPISAISGTGTGELLDLVCSE 354 (693)
Q Consensus 317 ~~~~~~~~~--~~~~g~-~~v~iSA~~g~gi~~Ll~~i~~~ 354 (693)
+.+.....+ ....|. .+..+|+..+.+++.+.+.+...
T Consensus 294 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 294 DEEKLEEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred chhHHHHHHHHHHhhccccccceeeeehhhHHHHHHHHHHH
Confidence 543332222 233343 58899999999999988877665
No 78
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.80 E-value=1.8e-18 Score=164.14 Aligned_cols=154 Identities=35% Similarity=0.455 Sum_probs=120.9
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCC
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (693)
+|+++|++|+|||||+|++.+...+.+...+++|.+.......+.+..+.+|||||+........
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~--------------- 67 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIE--------------- 67 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHH---------------
Confidence 69999999999999999999988777888999999998888888899999999999865321100
Q ss_pred CCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCccchhhhHH
Q 005504 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVS 324 (693)
Q Consensus 245 g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~~~~~~ 324 (693)
..........+..+|++++|+|+..+.+..+...... ..++|+++|+||+|+......
T Consensus 68 ---------------~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~----~~~~~vi~v~nK~D~~~~~~~--- 125 (157)
T cd04164 68 ---------------KIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL----PADKPIIVVLNKSDLLPDSEL--- 125 (157)
T ss_pred ---------------HHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh----hcCCCEEEEEEchhcCCcccc---
Confidence 0111344566789999999999998777766655444 257999999999998764432
Q ss_pred HHHhcCCCCccccccCCCCHHHHHHHHHhhc
Q 005504 325 EFWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (693)
Q Consensus 325 ~~~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l 355 (693)
.....+.+++++||.+|.|+++|++.|.+.+
T Consensus 126 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 126 LSLLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred ccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 2223345789999999999999999987754
No 79
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.80 E-value=4e-19 Score=175.56 Aligned_cols=154 Identities=27% Similarity=0.436 Sum_probs=120.1
Q ss_pred CCeEEEEcCCCCChhhHHHHhhcCceee-----------------ecCCCCceeeeEEEEEE--ecCeeEEEEecCCccc
Q 005504 163 LPRVAIVGRPNVGKSALFNRLVGGNRAI-----------------VVDEPGVTRDRMYGRSF--WGEHEFMLVDTGGVLN 223 (693)
Q Consensus 163 ~~~V~ivG~~nvGKSsL~n~l~~~~~~~-----------------v~~~~~~T~~~~~~~~~--~~~~~~~lvDTpG~~~ 223 (693)
..+|+++|++|+|||||+++|++..... .....+.|.+.....+. +.++.+.++||||+.+
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 3579999999999999999998653111 11224778887787888 8899999999999854
Q ss_pred ccCCchhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCC
Q 005504 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (693)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~ 303 (693)
+...+..++..+|++|+|||+..|+..+..+.+..++. .+
T Consensus 83 --------------------------------------f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~--~~ 122 (188)
T PF00009_consen 83 --------------------------------------FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRE--LG 122 (188)
T ss_dssp --------------------------------------HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHH--TT
T ss_pred --------------------------------------eeecccceecccccceeeeecccccccccccccccccc--cc
Confidence 22456678899999999999999999999999999988 58
Q ss_pred CcEEEEecccCCccchhhhH----H-HHH-hcC------CCCccccccCCCCHHHHHHHHHhhcc
Q 005504 304 KFIILAVNKCESPRKGIMQV----S-EFW-SLG------FSPLPISAISGTGTGELLDLVCSELK 356 (693)
Q Consensus 304 ~p~ivv~NK~D~~~~~~~~~----~-~~~-~~g------~~~v~iSA~~g~gi~~Ll~~i~~~l~ 356 (693)
.|+++|+||+|+........ . .+. ..+ ++++++||.+|.|+++|++.|.+.+|
T Consensus 123 ~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 123 IPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp -SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred cceEEeeeeccchhhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 89999999999985332211 1 121 122 35899999999999999999998876
No 80
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.80 E-value=9.7e-19 Score=190.49 Aligned_cols=164 Identities=23% Similarity=0.265 Sum_probs=121.0
Q ss_pred CCCeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC-eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005504 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE-HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (693)
Q Consensus 162 ~~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~-~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~ 240 (693)
....|+|||+||||||||+|+|++.+ ..++++|++|+.+..+.+.+.+ ..+.++||||+.........
T Consensus 158 ~iadValVG~PNaGKSTLln~Lt~~k-~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~---------- 226 (390)
T PRK12298 158 LLADVGLLGLPNAGKSTFIRAVSAAK-PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAG---------- 226 (390)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhCCc-ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhh----------
Confidence 34689999999999999999999886 6899999999999999998875 56999999999752211111
Q ss_pred ccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCC---C-CCHHHHHHHHHHHhh---cCCCcEEEEeccc
Q 005504 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA---G-LTAADEEIADWLRKN---YMDKFIILAVNKC 313 (693)
Q Consensus 241 ~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~---~-~~~~d~~i~~~L~~~---~~~~p~ivv~NK~ 313 (693)
+...+.++++++|++++|+|++. . .......+.+.+... ..++|+++|+||+
T Consensus 227 ---------------------Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKi 285 (390)
T PRK12298 227 ---------------------LGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKI 285 (390)
T ss_pred ---------------------HHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCC
Confidence 22445578999999999999872 1 112223455555442 1368999999999
Q ss_pred CCccchhh-h-HHHHHh-cCC--CCccccccCCCCHHHHHHHHHhhccc
Q 005504 314 ESPRKGIM-Q-VSEFWS-LGF--SPLPISAISGTGTGELLDLVCSELKK 357 (693)
Q Consensus 314 D~~~~~~~-~-~~~~~~-~g~--~~v~iSA~~g~gi~~Ll~~i~~~l~~ 357 (693)
|+...... . ...+.. .++ .++++||.++.|+++|++.|.+.+++
T Consensus 286 Dl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 286 DLLDEEEAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred ccCChHHHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence 98653221 1 112222 332 57999999999999999999998865
No 81
>PRK04213 GTP-binding protein; Provisional
Probab=99.79 E-value=1.8e-18 Score=172.40 Aligned_cols=165 Identities=25% Similarity=0.356 Sum_probs=110.0
Q ss_pred CCcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhH--
Q 005504 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALS-- 447 (693)
Q Consensus 370 ~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~-- 447 (693)
..++|+++|++|||||||+|+|.+.. ..++..+|+|++.....+ + .+.+|||||+.....+.. ...+.+.
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~t~~~~~~~~----~-~~~l~Dt~G~~~~~~~~~--~~~~~~~~~ 79 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKK-VRVGKRPGVTRKPNHYDW----G-DFILTDLPGFGFMSGVPK--EVQEKIKDE 79 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCceeeCceEEee----c-ceEEEeCCccccccccCH--HHHHHHHHH
Confidence 34799999999999999999999876 557788899988654322 2 689999999743221110 0011111
Q ss_pred HHHHH-HHHhcCCeEEEEeccccc-----------CCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHHHHHH
Q 005504 448 VNRAF-RAIRRSDVVALVIEAMAC-----------ITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVR 515 (693)
Q Consensus 448 ~~~~~-~~i~~aDvvllViDa~~~-----------~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~ 515 (693)
....+ ..+..+|++++|+|+... ....+..++..+...++|+++|+||+|+.... .. ..+++.
T Consensus 80 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~-~~----~~~~~~ 154 (201)
T PRK04213 80 IVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR-DE----VLDEIA 154 (201)
T ss_pred HHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH-HH----HHHHHH
Confidence 01111 234567899999998642 12345566777777899999999999996532 11 122333
Q ss_pred HHHhcC-C----CCcEEEeccccCCCHHHHHHHHHHHH
Q 005504 516 EKLRAL-D----WAPIVYSTAIAGQSVDKIIVAAEMVD 548 (693)
Q Consensus 516 ~~l~~~-~----~~piv~iSA~~g~gv~~L~~~i~~~~ 548 (693)
+.+... . ..+++++||++| |++++++.|.+..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~ 191 (201)
T PRK04213 155 ERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRL 191 (201)
T ss_pred HHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhh
Confidence 333211 0 136899999999 9999999997653
No 82
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.79 E-value=5e-19 Score=180.12 Aligned_cols=211 Identities=25% Similarity=0.284 Sum_probs=147.3
Q ss_pred hHHHHHHHHHHHHHhHHHhhHhhhcccchhhhhhhhhhhh-ccc-cccCCCCCCCCeEEEEcCCCCChhhHHHHhhcCce
Q 005504 111 DALEREAKDAVREYSSLLSRQLIIQDETDDRKDSGKKQKK-RKT-TIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNR 188 (693)
Q Consensus 111 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~V~ivG~~nvGKSsL~n~l~~~~~ 188 (693)
.+.|++-.+..++...+...-+.++++++.+.+....++. ... ......+.+..+|++||.|+||||||+|+|++.+
T Consensus 9 k~iEeeia~tpknKaTe~hig~lKaklA~Lr~El~~~~~~~gggg~gf~V~KsGda~v~lVGfPsvGKStLL~~LTnt~- 87 (365)
T COG1163 9 KAIEEEIARTPKNKATEHHIGLLKAKLAELREELEKRKSKSGGGGSGFAVKKSGDATVALVGFPSVGKSTLLNKLTNTK- 87 (365)
T ss_pred HHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcceEeccCCeEEEEEcCCCccHHHHHHHHhCCC-
Confidence 4445555554444444444445555566666555553221 111 3445667788999999999999999999999987
Q ss_pred eeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHH
Q 005504 189 AIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATA 268 (693)
Q Consensus 189 ~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~ 268 (693)
+.+.+++++|..+..+.+.++|-.++++|+||+........+ .| +++..
T Consensus 88 seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~g-------------rG------------------~~vls 136 (365)
T COG1163 88 SEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRG-------------RG------------------RQVLS 136 (365)
T ss_pred ccccccCceecccccceEeecCceEEEEcCcccccCcccCCC-------------Cc------------------ceeee
Confidence 788999999999999999999999999999999875443321 11 45667
Q ss_pred HHHhcCeEEEEEeCCCCCCH------------------------------------------HHH-HHHHHHHh------
Q 005504 269 AIEESCVIIFLVDGQAGLTA------------------------------------------ADE-EIADWLRK------ 299 (693)
Q Consensus 269 ~i~~adiil~VvD~~~~~~~------------------------------------------~d~-~i~~~L~~------ 299 (693)
.+++||+|++|+|+...... .|. .+...|++
T Consensus 137 v~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA 216 (365)
T COG1163 137 VARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNA 216 (365)
T ss_pred eeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccc
Confidence 88999999999996643321 111 11222222
Q ss_pred -------------------hcCCCcEEEEecccCCccchhhhHHHHHhcCCCCccccccCCCCHHHHHHHHHhhcc
Q 005504 300 -------------------NYMDKFIILAVNKCESPRKGIMQVSEFWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (693)
Q Consensus 300 -------------------~~~~~p~ivv~NK~D~~~~~~~~~~~~~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l~ 356 (693)
+...+|.++|+||+|+...+ ......+ -+..+++||..|.|+++|.+.|++.+.
T Consensus 217 ~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e--~~~~l~~-~~~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 217 DVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLE--ELERLAR-KPNSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred eEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHH--HHHHHHh-ccceEEEecccCCCHHHHHHHHHHhhC
Confidence 11247899999999998732 2222222 237899999999999999999999875
No 83
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.79 E-value=1.7e-18 Score=166.79 Aligned_cols=152 Identities=20% Similarity=0.248 Sum_probs=114.5
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEec---CeeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG---EHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~---~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~ 240 (693)
|.|+++|++|+|||||+|+|++.+. .....+++|.+.......+. +..+.+|||||+...
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~---------------- 63 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNV-AAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAF---------------- 63 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhccc-ccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHH----------------
Confidence 6799999999999999999998763 33455677877766666664 678999999998531
Q ss_pred ccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCccchh
Q 005504 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI 320 (693)
Q Consensus 241 ~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~~ 320 (693)
.......+..+|++++|+|++++...+....+.+++. .++|+++|+||+|+.....
T Consensus 64 ----------------------~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~--~~~p~ivv~NK~Dl~~~~~ 119 (168)
T cd01887 64 ----------------------TNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKA--ANVPFIVALNKIDKPNANP 119 (168)
T ss_pred ----------------------HHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHH--cCCCEEEEEEceecccccH
Confidence 1223345678999999999998887777777777776 5889999999999874321
Q ss_pred hhH----HHHH-------hcCCCCccccccCCCCHHHHHHHHHhhcc
Q 005504 321 MQV----SEFW-------SLGFSPLPISAISGTGTGELLDLVCSELK 356 (693)
Q Consensus 321 ~~~----~~~~-------~~g~~~v~iSA~~g~gi~~Ll~~i~~~l~ 356 (693)
... ..+. .....++++||.+|.|+.+|++.|.+...
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 120 ERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred HHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHhhh
Confidence 111 1111 11246899999999999999999987654
No 84
>CHL00071 tufA elongation factor Tu
Probab=99.79 E-value=1.2e-18 Score=192.40 Aligned_cols=153 Identities=21% Similarity=0.260 Sum_probs=121.5
Q ss_pred ccCCcEEEeecCCCCChhhHHHHHhcCCCce---------------ecCCCCcccceEEEEEeCCCCCeEEEEeCccccc
Q 005504 368 ENRIPAIAIVGRPNVGKSSILNALVGEDRTI---------------VSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRK 432 (693)
Q Consensus 368 ~~~~~~I~ivG~~n~GKSSLin~llg~~~~~---------------v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~ 432 (693)
+...++|+++|++|+|||||+|+|++..... ..-..|+|++.....+.. ++..+.|+||||+.+
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~~~iDtPGh~~ 87 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHAD 87 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEcc-CCeEEEEEECCChHH
Confidence 3455899999999999999999999752211 112369999988777764 677899999999865
Q ss_pred hhhhccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCc-EEEEEeccCCCCCcchhhHHHHH
Q 005504 433 RAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKG-CLIVVNKWDTIPNKNQQTATYYE 511 (693)
Q Consensus 433 ~~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p-~Ivv~NK~Dl~~~~~~~~~~~~~ 511 (693)
+ +..+.+.+..+|++++|+|+..++..++..++..+...++| +|+|+||||++... ...+.+.
T Consensus 88 ~--------------~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~--~~~~~~~ 151 (409)
T CHL00071 88 Y--------------VKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDE--ELLELVE 151 (409)
T ss_pred H--------------HHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHH--HHHHHHH
Confidence 3 34556788899999999999999999999999999999999 77899999997532 3344556
Q ss_pred HHHHHHHhcCCC----CcEEEeccccCCCH
Q 005504 512 QDVREKLRALDW----APIVYSTAIAGQSV 537 (693)
Q Consensus 512 ~~i~~~l~~~~~----~piv~iSA~~g~gv 537 (693)
+++...|...++ +|++++||++|.|+
T Consensus 152 ~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 152 LEVRELLSKYDFPGDDIPIVSGSALLALEA 181 (409)
T ss_pred HHHHHHHHHhCCCCCcceEEEcchhhcccc
Confidence 677777776553 79999999999864
No 85
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.79 E-value=5.5e-19 Score=174.87 Aligned_cols=148 Identities=30% Similarity=0.348 Sum_probs=111.2
Q ss_pred HHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCccchhh--hHHHHH------hcCC--
Q 005504 262 IERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM--QVSEFW------SLGF-- 331 (693)
Q Consensus 262 i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~~~--~~~~~~------~~g~-- 331 (693)
|...+..+++++|++|+|+|+++.....+..+. ... .++|+++|+||+|+...... ....+. ..++
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~--~~~--~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSLIPRLR--LFG--GNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKP 99 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCccchhHH--Hhc--CCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCc
Confidence 456777888999999999999876544444441 112 47899999999998643211 111121 2232
Q ss_pred -CCccccccCCCCHHHHHHHHHhhcccccCccchhhhccCCcEEEeecCCCCChhhHHHHHhcCC--------CceecCC
Q 005504 332 -SPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGED--------RTIVSPI 402 (693)
Q Consensus 332 -~~v~iSA~~g~gi~~Ll~~i~~~l~~~~~~~~~~~~~~~~~~I~ivG~~n~GKSSLin~llg~~--------~~~v~~~ 402 (693)
.++++||.+|.|+++|++.|.+.++. ..+++++|.||||||||+|+|++.. ...++..
T Consensus 100 ~~i~~vSA~~~~gi~eL~~~l~~~l~~-------------~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~ 166 (190)
T cd01855 100 KDVILISAKKGWGVEELINAIKKLAKK-------------GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPI 166 (190)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhhc-------------CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCC
Confidence 57899999999999999999888752 2579999999999999999999853 3467899
Q ss_pred CCcccceEEEEEeCCCCCeEEEEeCccc
Q 005504 403 SGTTRDAIDTEFTGPEGQKFRLIDTAGI 430 (693)
Q Consensus 403 ~gtT~d~~~~~~~~~~g~~i~liDTpG~ 430 (693)
+|||++.....+. ..+.+|||||+
T Consensus 167 ~gtT~~~~~~~~~----~~~~~~DtPG~ 190 (190)
T cd01855 167 PGTTLDLIKIPLG----NGKKLYDTPGI 190 (190)
T ss_pred CCeeeeeEEEecC----CCCEEEeCcCC
Confidence 9999998776653 25799999995
No 86
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.79 E-value=5.1e-18 Score=163.52 Aligned_cols=163 Identities=33% Similarity=0.474 Sum_probs=122.4
Q ss_pred CCeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005504 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (693)
Q Consensus 163 ~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (693)
.++|+++|.+|+|||||+|+|++.......+.+++|++.....+..++..+.+|||||+.........
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~------------ 69 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEG------------ 69 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhcc------------
Confidence 35799999999999999999999876777888999999888888888999999999999753221110
Q ss_pred CCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCccch--h
Q 005504 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKG--I 320 (693)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~--~ 320 (693)
+..........++..+|++++|+|+.++.+..+..+...+.. .++|+++|+||+|+.... .
T Consensus 70 ---------------~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~ 132 (174)
T cd01895 70 ---------------IEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILE--EGKALVIVVNKWDLVEKDSKT 132 (174)
T ss_pred ---------------HHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHh--cCCCEEEEEeccccCCccHHH
Confidence 001111234466789999999999999888877777777665 478999999999987542 1
Q ss_pred h-hHH-HHH-hc----CCCCccccccCCCCHHHHHHHHHhh
Q 005504 321 M-QVS-EFW-SL----GFSPLPISAISGTGTGELLDLVCSE 354 (693)
Q Consensus 321 ~-~~~-~~~-~~----g~~~v~iSA~~g~gi~~Ll~~i~~~ 354 (693)
. ... ... .+ +.+++++||++|.|+.++++.+...
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 133 MKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred HHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 1 111 111 12 2368999999999999999988653
No 87
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.79 E-value=4.6e-18 Score=164.21 Aligned_cols=167 Identities=22% Similarity=0.250 Sum_probs=122.2
Q ss_pred CCcEEEeecCCCCChhhHHHHHhcCC-CceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHH
Q 005504 370 RIPAIAIVGRPNVGKSSILNALVGED-RTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (693)
Q Consensus 370 ~~~~I~ivG~~n~GKSSLin~llg~~-~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (693)
..+-||++|++|||||||+|+|+|.+ -+.+|..||.|+......+. ..+.+||.||.+-- ++. .......
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~----~~~~lVDlPGYGyA-kv~----k~~~e~w 93 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD----DELRLVDLPGYGYA-KVP----KEVKEKW 93 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec----CcEEEEeCCCcccc-cCC----HHHHHHH
Confidence 45789999999999999999999965 47899999999987665543 23899999998542 111 1111111
Q ss_pred HH-HHHHH---hcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005504 449 NR-AFRAI---RRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (693)
Q Consensus 449 ~~-~~~~i---~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~ 524 (693)
.+ ...++ ..-.++++++|+.+++...|.++++++...++|+++|+||+|.+..... ......+.+.+......
T Consensus 94 ~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~---~k~l~~v~~~l~~~~~~ 170 (200)
T COG0218 94 KKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSER---NKQLNKVAEELKKPPPD 170 (200)
T ss_pred HHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHH---HHHHHHHHHHhcCCCCc
Confidence 12 22223 3457789999999999999999999999999999999999999874321 12233444444332222
Q ss_pred c--EEEeccccCCCHHHHHHHHHHHH
Q 005504 525 P--IVYSTAIAGQSVDKIIVAAEMVD 548 (693)
Q Consensus 525 p--iv~iSA~~g~gv~~L~~~i~~~~ 548 (693)
. ++..|+.++.|+++|...|.+.+
T Consensus 171 ~~~~~~~ss~~k~Gi~~l~~~i~~~~ 196 (200)
T COG0218 171 DQWVVLFSSLKKKGIDELKAKILEWL 196 (200)
T ss_pred cceEEEEecccccCHHHHHHHHHHHh
Confidence 2 89999999999999999887654
No 88
>PLN03118 Rab family protein; Provisional
Probab=99.79 E-value=2.2e-18 Score=173.49 Aligned_cols=182 Identities=19% Similarity=0.201 Sum_probs=118.2
Q ss_pred CcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCC-CCCeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 371 ~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
.+||+++|.+|||||||+++|++.......+..|.+... ..+... ....+.||||||+.++..+
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~l~l~Dt~G~~~~~~~------------- 78 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKI--KQLTVGGKRLKLTIWDTAGQERFRTL------------- 78 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEE--EEEEECCEEEEEEEEECCCchhhHHH-------------
Confidence 479999999999999999999987644344333333322 223321 2247899999998765332
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHHH--HHHHHHH----hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDCR--IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~~--~~~~l~~----~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~ 523 (693)
...+++.+|++|+|+|+++..+.++.. |...+.. .+.|+++|+||+|+....... .++ ....... ..
T Consensus 79 -~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~-~~~----~~~~~~~-~~ 151 (211)
T PLN03118 79 -TSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVS-REE----GMALAKE-HG 151 (211)
T ss_pred -HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccC-HHH----HHHHHHH-cC
Confidence 223578999999999998876555543 3333332 357999999999996543221 111 1111111 24
Q ss_pred CcEEEeccccCCCHHHHHHHHHHHHHHhhccC---CchhHHHHHHhHhhccCCC
Q 005504 524 APIVYSTAIAGQSVDKIIVAAEMVDKERSRRL---STATINQVVQEAVAFKSPP 574 (693)
Q Consensus 524 ~piv~iSA~~g~gv~~L~~~i~~~~~~~~~~i---~t~~ln~~l~~~~~~~~~p 574 (693)
.+++++||++|.|++++|+.+.+......... .+...+..+.+.....+||
T Consensus 152 ~~~~e~SAk~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (211)
T PLN03118 152 CLFLECSAKTRENVEQCFEELALKIMEVPSLLEEGSTAVKRNILKQKPEHQPPP 205 (211)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHhhhhhhhcccccccccccccccccCCCC
Confidence 68999999999999999999987654432222 3454555555555555555
No 89
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.78 E-value=5.8e-18 Score=167.81 Aligned_cols=170 Identities=25% Similarity=0.291 Sum_probs=120.6
Q ss_pred cCCcEEEeecCCCCChhhHHHHHhcCC-CceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHh-
Q 005504 369 NRIPAIAIVGRPNVGKSSILNALVGED-RTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEAL- 446 (693)
Q Consensus 369 ~~~~~I~ivG~~n~GKSSLin~llg~~-~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~- 446 (693)
...++|+++|.+|||||||+|+|++.. ...+++.+|+|++.....+ +..+.||||||+.....-. ...+.+
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~l~l~DtpG~~~~~~~~---~~~~~~~ 94 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV----NDKLRLVDLPGYGYAKVSK---EEKEKWQ 94 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec----CCeEEEeCCCCCCCcCCCc---hHHHHHH
Confidence 456899999999999999999999874 5667888888887544332 3689999999975321000 001111
Q ss_pred -HHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCc
Q 005504 447 -SVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (693)
Q Consensus 447 -~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~p 525 (693)
.....++....++++++|+|+..+.+..+..+...+...++|+++++||+|+..... .+...+.+.+.+... ..+
T Consensus 95 ~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~---~~~~~~~i~~~l~~~-~~~ 170 (196)
T PRK00454 95 KLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGE---RKKQLKKVRKALKFG-DDE 170 (196)
T ss_pred HHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHH---HHHHHHHHHHHHHhc-CCc
Confidence 112233333456789999999888888877777888788999999999999975422 122333344444433 468
Q ss_pred EEEeccccCCCHHHHHHHHHHHHH
Q 005504 526 IVYSTAIAGQSVDKIIVAAEMVDK 549 (693)
Q Consensus 526 iv~iSA~~g~gv~~L~~~i~~~~~ 549 (693)
++++||++|.|++++++.+.+..+
T Consensus 171 ~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 171 VILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhc
Confidence 999999999999999999877643
No 90
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.78 E-value=2.4e-18 Score=201.40 Aligned_cols=165 Identities=19% Similarity=0.359 Sum_probs=124.8
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (693)
.+|+++|+||||||||+|+|+|.+ ..+++++|+|++.....+.. ++.++.+|||||+.++...... ...+.. +.+.
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~-~~vgn~pGvTve~k~g~~~~-~~~~i~lvDtPG~ysl~~~~~~-~s~~E~-i~~~ 79 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGAR-QRVGNWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQ-TSLDEQ-IACH 79 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCceEeeEEEEEEc-CceEEEEEECCCcccccccccc-ccHHHH-HHHH
Confidence 689999999999999999999875 47899999999998888875 7789999999999876432110 111221 2222
Q ss_pred HHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcEEEecc
Q 005504 452 FRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTA 531 (693)
Q Consensus 452 ~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~piv~iSA 531 (693)
.-....+|++++|+|+++. +.+..+..++.+.++|+++|+||+|+.+..... ...+.+.+.+ ++|++++||
T Consensus 80 ~l~~~~aD~vI~VvDat~l--er~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~---id~~~L~~~L----G~pVvpiSA 150 (772)
T PRK09554 80 YILSGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIAEKQNIR---IDIDALSARL----GCPVIPLVS 150 (772)
T ss_pred HHhccCCCEEEEEecCCcc--hhhHHHHHHHHHcCCCEEEEEEchhhhhccCcH---HHHHHHHHHh----CCCEEEEEe
Confidence 2223589999999999874 456677788888999999999999986433211 1123333333 579999999
Q ss_pred ccCCCHHHHHHHHHHHHH
Q 005504 532 IAGQSVDKIIVAAEMVDK 549 (693)
Q Consensus 532 ~~g~gv~~L~~~i~~~~~ 549 (693)
++|.|++++++.+.+..+
T Consensus 151 ~~g~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 151 TRGRGIEALKLAIDRHQA 168 (772)
T ss_pred ecCCCHHHHHHHHHHhhh
Confidence 999999999999987653
No 91
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=1e-18 Score=186.32 Aligned_cols=164 Identities=32% Similarity=0.363 Sum_probs=129.1
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhcccC
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (693)
+.|+|+|+||||||||+|+|...+.++|++.||+|||.....++++|.++.|+||+|+.+.+. +..+.
T Consensus 269 l~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~---~~iE~--------- 336 (531)
T KOG1191|consen 269 LQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESN---DGIEA--------- 336 (531)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccC---ChhHH---------
Confidence 789999999999999999999999999999999999999999999999999999999976222 11111
Q ss_pred CCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhc----------CCCcEEEEeccc
Q 005504 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY----------MDKFIILAVNKC 313 (693)
Q Consensus 244 ~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~----------~~~p~ivv~NK~ 313 (693)
+=.+++...++.||+|++|+|+....+.++..+.+.|.... .++|+++|+||+
T Consensus 337 -----------------~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~ 399 (531)
T KOG1191|consen 337 -----------------LGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKS 399 (531)
T ss_pred -----------------HhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechh
Confidence 12367888999999999999998888888888888886622 237899999999
Q ss_pred CCccchh-hhH--HHHHh-c---CCCC-ccccccCCCCHHHHHHHHHhhcc
Q 005504 314 ESPRKGI-MQV--SEFWS-L---GFSP-LPISAISGTGTGELLDLVCSELK 356 (693)
Q Consensus 314 D~~~~~~-~~~--~~~~~-~---g~~~-v~iSA~~g~gi~~Ll~~i~~~l~ 356 (693)
|+..... ... ..+.. . .+++ +.+||.+++|+..|...|.+.+.
T Consensus 400 D~~s~~~~~~~~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~ 450 (531)
T KOG1191|consen 400 DLVSKIPEMTKIPVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVE 450 (531)
T ss_pred hccCccccccCCceeccccccCcccceEEEeeechhhhHHHHHHHHHHHHH
Confidence 9876411 110 00111 1 2344 45999999999999998876554
No 92
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=2.6e-18 Score=163.44 Aligned_cols=162 Identities=20% Similarity=0.202 Sum_probs=120.5
Q ss_pred cCCcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCC--eEEEEeCccccchhhhccCCChhhHh
Q 005504 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEAL 446 (693)
Q Consensus 369 ~~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~--~i~liDTpG~~~~~~~~~~~~~~e~~ 446 (693)
...+||.++|.+|||||.|+-++.+.. ..-+......+|.....+.+ +|. ++++|||+|++||..+
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~-f~e~~~sTIGVDf~~rt~e~-~gk~iKlQIWDTAGQERFrti---------- 74 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDT-FTESYISTIGVDFKIRTVEL-DGKTIKLQIWDTAGQERFRTI---------- 74 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCC-cchhhcceeeeEEEEEEeee-cceEEEEEeeeccccHHHhhh----------
Confidence 345899999999999999999998753 33333334445555555554 444 7999999999988543
Q ss_pred HHHHHHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHHh---CCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCC
Q 005504 447 SVNRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD 522 (693)
Q Consensus 447 ~~~~~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~~---~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~ 522 (693)
+..+++.||++|+|+|.+...+.... .|+..+.+. ++|.++|+||+|+.+...... +..+.|....
T Consensus 75 ----t~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~------~~a~~fa~~~ 144 (205)
T KOG0084|consen 75 ----TSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVST------EEAQEFADEL 144 (205)
T ss_pred ----hHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCH------HHHHHHHHhc
Confidence 34578999999999999997777775 477777764 679999999999976543321 1223344444
Q ss_pred CCc-EEEeccccCCCHHHHHHHHHHHHHHhh
Q 005504 523 WAP-IVYSTAIAGQSVDKIIVAAEMVDKERS 552 (693)
Q Consensus 523 ~~p-iv~iSA~~g~gv~~L~~~i~~~~~~~~ 552 (693)
+.| ++++|||.+.||++.|..+....+...
T Consensus 145 ~~~~f~ETSAK~~~NVe~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 145 GIPIFLETSAKDSTNVEDAFLTLAKELKQRK 175 (205)
T ss_pred CCcceeecccCCccCHHHHHHHHHHHHHHhc
Confidence 567 999999999999999999987765543
No 93
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.78 E-value=5.8e-18 Score=168.96 Aligned_cols=156 Identities=21% Similarity=0.186 Sum_probs=107.2
Q ss_pred EEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCC--CeEEEEeCccccchhhhccCCChhhHhHHHH
Q 005504 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (693)
Q Consensus 373 ~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (693)
+|+++|..|||||||++++...... ....+.++.+.....+.. ++ ..+.+|||||+.++..++
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~-~~~~~Ti~~~~~~~~i~~-~~~~v~l~iwDtaGqe~~~~l~------------- 66 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFC-EACKSGVGVDFKIKTVEL-RGKKIRLQIWDTAGQERFNSIT------------- 66 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCC-CcCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCchhhHHHH-------------
Confidence 6899999999999999999965422 222232333433334443 34 478999999987653322
Q ss_pred HHHHHhcCCeEEEEecccccCCHHHHH-HHHHHHH---hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcE
Q 005504 451 AFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPI 526 (693)
Q Consensus 451 ~~~~i~~aDvvllViDa~~~~~~~d~~-~~~~l~~---~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~pi 526 (693)
..+++.||++|+|+|+++..+.++.. |+..+.. .+.|+|+|+||+|+........ ....+......+.++
T Consensus 67 -~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~-----~~~~~~a~~~~~~~~ 140 (202)
T cd04120 67 -SAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISR-----QQGEKFAQQITGMRF 140 (202)
T ss_pred -HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCH-----HHHHHHHHhcCCCEE
Confidence 23678999999999999887766653 5555544 3689999999999964332211 111122222234689
Q ss_pred EEeccccCCCHHHHHHHHHHHHH
Q 005504 527 VYSTAIAGQSVDKIIVAAEMVDK 549 (693)
Q Consensus 527 v~iSA~~g~gv~~L~~~i~~~~~ 549 (693)
+++||++|.||+++|+++.+...
T Consensus 141 ~etSAktg~gV~e~F~~l~~~~~ 163 (202)
T cd04120 141 CEASAKDNFNVDEIFLKLVDDIL 163 (202)
T ss_pred EEecCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999887643
No 94
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.78 E-value=2.7e-18 Score=166.59 Aligned_cols=157 Identities=25% Similarity=0.264 Sum_probs=110.1
Q ss_pred eecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHHHHHHH
Q 005504 376 IVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAI 455 (693)
Q Consensus 376 ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i 455 (693)
++|++|||||||+|+|.+... .+++++++|+++....+...++..+.+|||||+.+..... ..........+
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~-------~~~~~~~~~~~ 72 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEG-------RGLGNQFLAHI 72 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcC-------CCccHHHHHHH
Confidence 589999999999999999865 6788899999887777665228899999999985432211 11112345567
Q ss_pred hcCCeEEEEecccccC------CHHHH-HHHHHHHH----------hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHH
Q 005504 456 RRSDVVALVIEAMACI------TEQDC-RIAERIEQ----------EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKL 518 (693)
Q Consensus 456 ~~aDvvllViDa~~~~------~~~d~-~~~~~l~~----------~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l 518 (693)
+.+|++++|+|+.+.. +..+. .+...+.. .++|+++|+||+|+....... .+. ....
T Consensus 73 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~---~~~---~~~~ 146 (176)
T cd01881 73 RRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELE---EEL---VREL 146 (176)
T ss_pred hccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHH---HHH---HHHH
Confidence 8899999999998763 22222 23333331 479999999999996543211 111 1122
Q ss_pred hcCCCCcEEEeccccCCCHHHHHHHHHH
Q 005504 519 RALDWAPIVYSTAIAGQSVDKIIVAAEM 546 (693)
Q Consensus 519 ~~~~~~piv~iSA~~g~gv~~L~~~i~~ 546 (693)
......+++++||++|.|++++++.+..
T Consensus 147 ~~~~~~~~~~~Sa~~~~gl~~l~~~l~~ 174 (176)
T cd01881 147 ALEEGAEVVPISAKTEEGLDELIRAIYE 174 (176)
T ss_pred hcCCCCCEEEEehhhhcCHHHHHHHHHh
Confidence 2334578999999999999999998754
No 95
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.78 E-value=8.4e-18 Score=161.29 Aligned_cols=153 Identities=21% Similarity=0.233 Sum_probs=105.9
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCC--CeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
.||+++|.+|||||||+|++++.. .+..+.+++.+........ ++ ..+.+|||||+.++..+
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~------------- 66 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSY--FVTDYDPTIEDSYTKQCEI-DGQWAILDILDTAGQEEFSAM------------- 66 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCC--CCcccCCCccceEEEEEEE-CCEEEEEEEEECCCCcchhHH-------------
Confidence 699999999999999999999764 2455556666554444433 34 36889999998764221
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHH----hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~----~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~ 524 (693)
....++.+|++++|+|+++..+.+.. .|+..+.. .+.|+++|+||+|+....... .+ ...+..... ..
T Consensus 67 -~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~-~~----~~~~~~~~~-~~ 139 (164)
T cd04145 67 -REQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVS-RE----EGQELARKL-KI 139 (164)
T ss_pred -HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceec-HH----HHHHHHHHc-CC
Confidence 22356889999999999886544443 24444433 378999999999996532211 11 122222222 36
Q ss_pred cEEEeccccCCCHHHHHHHHHHH
Q 005504 525 PIVYSTAIAGQSVDKIIVAAEMV 547 (693)
Q Consensus 525 piv~iSA~~g~gv~~L~~~i~~~ 547 (693)
+++++||++|.|++++|+.+.+.
T Consensus 140 ~~~~~Sa~~~~~i~~l~~~l~~~ 162 (164)
T cd04145 140 PYIETSAKDRLNVDKAFHDLVRV 162 (164)
T ss_pred cEEEeeCCCCCCHHHHHHHHHHh
Confidence 89999999999999999988654
No 96
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.78 E-value=2.2e-18 Score=173.49 Aligned_cols=180 Identities=22% Similarity=0.297 Sum_probs=134.4
Q ss_pred hccCCcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHh
Q 005504 367 EENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEAL 446 (693)
Q Consensus 367 ~~~~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~ 446 (693)
++.+..+|+++|.||||||||.|.++|.+.+.++....||+..+.+.+.. +...++|.||||+........ ...+..
T Consensus 68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts-~eTQlvf~DTPGlvs~~~~r~--~~l~~s 144 (379)
T KOG1423|consen 68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITS-GETQLVFYDTPGLVSKKMHRR--HHLMMS 144 (379)
T ss_pred hcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEec-CceEEEEecCCcccccchhhh--HHHHHH
Confidence 44567899999999999999999999999999999999999999998885 667899999999987655432 233333
Q ss_pred HHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHh-CCcEEEEEeccCCCCCcchh----------hHHHHHHHHH
Q 005504 447 SVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQE-GKGCLIVVNKWDTIPNKNQQ----------TATYYEQDVR 515 (693)
Q Consensus 447 ~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~-~~p~Ivv~NK~Dl~~~~~~~----------~~~~~~~~i~ 515 (693)
.+...++++..||++++|+|+++.-+.-.-.++..+.+. ++|-|+|.||.|+......- ......-.++
T Consensus 145 ~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~ 224 (379)
T KOG1423|consen 145 VLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQ 224 (379)
T ss_pred hhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHH
Confidence 444678889999999999999864444444567777664 68999999999986532200 0011112234
Q ss_pred HHHhcCC-------------CCcEEEeccccCCCHHHHHHHHHHHHH
Q 005504 516 EKLRALD-------------WAPIVYSTAIAGQSVDKIIVAAEMVDK 549 (693)
Q Consensus 516 ~~l~~~~-------------~~piv~iSA~~g~gv~~L~~~i~~~~~ 549 (693)
+.+.... +-.+|++||++|.|+++|.+.+....+
T Consensus 225 ~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 225 EKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred HHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 4443332 234999999999999999999986643
No 97
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.77 E-value=4.2e-18 Score=188.66 Aligned_cols=157 Identities=31% Similarity=0.371 Sum_probs=120.9
Q ss_pred CCeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005504 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (693)
Q Consensus 163 ~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (693)
..+|+++|+||||||||+|+|++...++++++||+|++.....+.++|..+.+|||||+..... ..+
T Consensus 203 g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~----~ie--------- 269 (442)
T TIGR00450 203 GFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHAD----FVE--------- 269 (442)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchh----HHH---------
Confidence 3589999999999999999999987788999999999999999999999999999999964221 110
Q ss_pred CCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCccchhhh
Q 005504 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ 322 (693)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~~~~ 322 (693)
..-...+..+++.+|++++|+|++.+.+..+. ++..+.. .++|+++|+||+|+.....
T Consensus 270 -----------------~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~--~~~piIlV~NK~Dl~~~~~-- 327 (442)
T TIGR00450 270 -----------------RLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNK--SKKPFILVLNKIDLKINSL-- 327 (442)
T ss_pred -----------------HHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhh--CCCCEEEEEECccCCCcch--
Confidence 00113455788999999999999988776665 4444443 4789999999999865421
Q ss_pred HHHH-HhcCCCCccccccCCCCHHHHHHHHHhhcc
Q 005504 323 VSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (693)
Q Consensus 323 ~~~~-~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l~ 356 (693)
..+ ..++.+++.+||++ .|++++++.+.+.+.
T Consensus 328 -~~~~~~~~~~~~~vSak~-~gI~~~~~~L~~~i~ 360 (442)
T TIGR00450 328 -EFFVSSKVLNSSNLSAKQ-LKIKALVDLLTQKIN 360 (442)
T ss_pred -hhhhhhcCCceEEEEEec-CCHHHHHHHHHHHHH
Confidence 111 23455678999998 699999988876554
No 98
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.77 E-value=2.8e-18 Score=165.37 Aligned_cols=155 Identities=16% Similarity=0.110 Sum_probs=101.3
Q ss_pred EEEeecCCCCChhhHHHHHhcCCCc---eecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 373 AIAIVGRPNVGKSSILNALVGEDRT---IVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 373 ~I~ivG~~n~GKSSLin~llg~~~~---~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
+|+++|++|||||||+|+|.+.... .......+|+......+.+ ++..+.+|||||+.++..
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~-------------- 65 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV-GNARLKFWDLGGQESLRS-------------- 65 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE-CCEEEEEEECCCChhhHH--------------
Confidence 5899999999999999999864321 1112223344433444554 578999999999866422
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHH-HHHHHHHHH----hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhc--CC
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQD-CRIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRA--LD 522 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d-~~~~~~l~~----~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~--~~ 522 (693)
.....++.+|++++|+|+++..+... ..++..+.. .++|+++|+||+|+...... .+..+.+...... ..
T Consensus 66 ~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~---~~~~~~~~~~~~~~~~~ 142 (167)
T cd04160 66 LWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSV---EEIKEVFQDKAEEIGRR 142 (167)
T ss_pred HHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCH---HHHHHHhccccccccCC
Confidence 12346789999999999977532222 223333322 47999999999998653221 1222222221111 12
Q ss_pred CCcEEEeccccCCCHHHHHHHHH
Q 005504 523 WAPIVYSTAIAGQSVDKIIVAAE 545 (693)
Q Consensus 523 ~~piv~iSA~~g~gv~~L~~~i~ 545 (693)
..+++++||++|.|+++++++|.
T Consensus 143 ~~~~~~~Sa~~g~gv~e~~~~l~ 165 (167)
T cd04160 143 DCLVLPVSALEGTGVREGIEWLV 165 (167)
T ss_pred ceEEEEeeCCCCcCHHHHHHHHh
Confidence 45899999999999999999885
No 99
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.77 E-value=6.4e-18 Score=164.90 Aligned_cols=152 Identities=23% Similarity=0.294 Sum_probs=106.8
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceee--------e------cCCCCceeeeEEEEEEe-----cCeeEEEEecCCccccc
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAI--------V------VDEPGVTRDRMYGRSFW-----GEHEFMLVDTGGVLNVS 225 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~--------v------~~~~~~T~~~~~~~~~~-----~~~~~~lvDTpG~~~~~ 225 (693)
.|+++|++|||||||+++|++...++ . ....|+|.+.......+ .+..+.+|||||+..+
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~- 80 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF- 80 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh-
Confidence 58999999999999999998743111 1 11235555554444434 3456889999999641
Q ss_pred CCchhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCc
Q 005504 226 KSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF 305 (693)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p 305 (693)
...+..++..+|++|+|+|++.+...++...+..+.. .++|
T Consensus 81 -------------------------------------~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~--~~~~ 121 (179)
T cd01890 81 -------------------------------------SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE--NNLE 121 (179)
T ss_pred -------------------------------------HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH--cCCC
Confidence 1334567889999999999998877766655555544 4789
Q ss_pred EEEEecccCCccchhhh-HHHHH-hcCC---CCccccccCCCCHHHHHHHHHhhcc
Q 005504 306 IILAVNKCESPRKGIMQ-VSEFW-SLGF---SPLPISAISGTGTGELLDLVCSELK 356 (693)
Q Consensus 306 ~ivv~NK~D~~~~~~~~-~~~~~-~~g~---~~v~iSA~~g~gi~~Ll~~i~~~l~ 356 (693)
+++|+||+|+....... ..++. .+++ .++++||++|.|+++|++.|.+.++
T Consensus 122 iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 122 IIPVINKIDLPSADPERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred EEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 99999999986432111 11221 2333 3789999999999999999988765
No 100
>PRK04213 GTP-binding protein; Provisional
Probab=99.77 E-value=9.3e-18 Score=167.35 Aligned_cols=165 Identities=32% Similarity=0.445 Sum_probs=111.0
Q ss_pred CCeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005504 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (693)
Q Consensus 163 ~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (693)
.++|+++|++|||||||+|+|.+.. ..++..||+|++.... .++ .+.+|||||+...........
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~t~~~~~~--~~~--~~~l~Dt~G~~~~~~~~~~~~---------- 73 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKK-VRVGKRPGVTRKPNHY--DWG--DFILTDLPGFGFMSGVPKEVQ---------- 73 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCceeeCceEE--eec--ceEEEeCCccccccccCHHHH----------
Confidence 4689999999999999999999876 5577888998876543 333 689999999753221111100
Q ss_pred CCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCC-----------CHHHHHHHHHHHhhcCCCcEEEEec
Q 005504 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL-----------TAADEEIADWLRKNYMDKFIILAVN 311 (693)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~-----------~~~d~~i~~~L~~~~~~~p~ivv~N 311 (693)
..+...+...+...+..++++++|+|+.... ...+.++..++.. .+.|+++|+|
T Consensus 74 -------------~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~N 138 (201)
T PRK04213 74 -------------EKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVN 138 (201)
T ss_pred -------------HHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEEE
Confidence 1111112222233456689999999986532 2234566777665 4799999999
Q ss_pred ccCCccchhhhHHHH-HhcCC---------CCccccccCCCCHHHHHHHHHhhcccc
Q 005504 312 KCESPRKGIMQVSEF-WSLGF---------SPLPISAISGTGTGELLDLVCSELKKV 358 (693)
Q Consensus 312 K~D~~~~~~~~~~~~-~~~g~---------~~v~iSA~~g~gi~~Ll~~i~~~l~~~ 358 (693)
|+|+.........++ ..++. .++++||++| |++++++.|.+.+...
T Consensus 139 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 139 KMDKIKNRDEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA 194 (201)
T ss_pred CccccCcHHHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence 999865431111221 12232 4689999999 9999999999887643
No 101
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.77 E-value=5.9e-18 Score=162.20 Aligned_cols=152 Identities=20% Similarity=0.208 Sum_probs=104.8
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCC--CeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
+||+++|.+|||||||++++.+... +..+.+|+.+.....+.. ++ ..+.+|||||+.++..++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~------------ 66 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQIEV-DGQQCMLEILDTAGTEQFTAMR------------ 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--CcccCCchhhhEEEEEEE-CCEEEEEEEEECCCccccchHH------------
Confidence 5899999999999999999997542 234445555544444443 33 357789999987653321
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHH----hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~----~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~ 524 (693)
..+++.+|++++|+|.++..+.++. .|+..+.. .++|+++|+||+|+....... .+ ....+.+ .. ..
T Consensus 67 --~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~-~~-~~~~~~~---~~-~~ 138 (163)
T cd04136 67 --DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVS-RE-EGQALAR---QW-GC 138 (163)
T ss_pred --HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceec-HH-HHHHHHH---Hc-CC
Confidence 2256889999999999876554443 35555543 368999999999986533211 11 1112222 22 37
Q ss_pred cEEEeccccCCCHHHHHHHHHH
Q 005504 525 PIVYSTAIAGQSVDKIIVAAEM 546 (693)
Q Consensus 525 piv~iSA~~g~gv~~L~~~i~~ 546 (693)
|++++||++|.|++++++.+.+
T Consensus 139 ~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04136 139 PFYETSAKSKINVDEVFADLVR 160 (163)
T ss_pred eEEEecCCCCCCHHHHHHHHHH
Confidence 8999999999999999998865
No 102
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.77 E-value=5.9e-18 Score=167.74 Aligned_cols=153 Identities=20% Similarity=0.230 Sum_probs=113.2
Q ss_pred eEEEEcCCCCChhhHHHHhhcC------ceeeecCCCCceeeeEEEEEEec--------------CeeEEEEecCCcccc
Q 005504 165 RVAIVGRPNVGKSALFNRLVGG------NRAIVVDEPGVTRDRMYGRSFWG--------------EHEFMLVDTGGVLNV 224 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~------~~~~v~~~~~~T~~~~~~~~~~~--------------~~~~~lvDTpG~~~~ 224 (693)
+|+++|++|+|||||+++|++. ........+|+|.+.......+. +..+.+|||||+..
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~- 80 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS- 80 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH-
Confidence 6999999999999999999973 11223445678888877666665 67899999999842
Q ss_pred cCCchhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCC
Q 005504 225 SKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDK 304 (693)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~ 304 (693)
+.+.+..++..+|++++|+|+..+.+.++.+.+.+... .+.
T Consensus 81 -------------------------------------~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~--~~~ 121 (192)
T cd01889 81 -------------------------------------LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEI--LCK 121 (192)
T ss_pred -------------------------------------HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHH--cCC
Confidence 12344466788999999999999887777655555544 367
Q ss_pred cEEEEecccCCccchhh-----hHHH-----HH---hcCCCCccccccCCCCHHHHHHHHHhhccc
Q 005504 305 FIILAVNKCESPRKGIM-----QVSE-----FW---SLGFSPLPISAISGTGTGELLDLVCSELKK 357 (693)
Q Consensus 305 p~ivv~NK~D~~~~~~~-----~~~~-----~~---~~g~~~v~iSA~~g~gi~~Ll~~i~~~l~~ 357 (693)
|+++|+||+|+...... .... +. ..+.+++++||.+|.|+++|++.|...++.
T Consensus 122 ~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 122 KLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred CEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 99999999998743211 1111 11 124578999999999999999999887764
No 103
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.77 E-value=4.6e-18 Score=167.20 Aligned_cols=161 Identities=19% Similarity=0.217 Sum_probs=101.2
Q ss_pred CcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHH
Q 005504 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (693)
Q Consensus 371 ~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (693)
..+|+++|.+|||||||++++++.......+..|.+............+..+.+|||||+.++...
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~-------------- 68 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPL-------------- 68 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHH--------------
Confidence 379999999999999999999876543222222323322222221123468999999998654222
Q ss_pred HHHHHhcCCeEEEEecccccCCHHHH-HHHHHH----HHhCCcEEEEEeccCCCCCcchhhHHHHHHHHH-HHHhcCCCC
Q 005504 451 AFRAIRRSDVVALVIEAMACITEQDC-RIAERI----EQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVR-EKLRALDWA 524 (693)
Q Consensus 451 ~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l----~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~-~~l~~~~~~ 524 (693)
....++.+|++++|+|++++.+..+. .++..+ ...++|+++|+||+|+...... +.+...+. ..+......
T Consensus 69 ~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~---~~~~~~~~~~~~~~~~~~ 145 (183)
T cd04152 69 WKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSV---SEVEKLLALHELSASTPW 145 (183)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCH---HHHHHHhCccccCCCCce
Confidence 12247899999999999875333322 233322 3357999999999998542211 11111110 001111135
Q ss_pred cEEEeccccCCCHHHHHHHHHHHH
Q 005504 525 PIVYSTAIAGQSVDKIIVAAEMVD 548 (693)
Q Consensus 525 piv~iSA~~g~gv~~L~~~i~~~~ 548 (693)
+++++||++|.|++++++.|.+..
T Consensus 146 ~~~~~SA~~~~gi~~l~~~l~~~l 169 (183)
T cd04152 146 HVQPACAIIGEGLQEGLEKLYEMI 169 (183)
T ss_pred EEEEeecccCCCHHHHHHHHHHHH
Confidence 689999999999999999987654
No 104
>PRK12736 elongation factor Tu; Reviewed
Probab=99.77 E-value=6.6e-18 Score=185.49 Aligned_cols=163 Identities=19% Similarity=0.248 Sum_probs=123.5
Q ss_pred ccCCcEEEeecCCCCChhhHHHHHhcCCC------cee---------cCCCCcccceEEEEEeCCCCCeEEEEeCccccc
Q 005504 368 ENRIPAIAIVGRPNVGKSSILNALVGEDR------TIV---------SPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRK 432 (693)
Q Consensus 368 ~~~~~~I~ivG~~n~GKSSLin~llg~~~------~~v---------~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~ 432 (693)
+.+.++|+++|++++|||||+++|++... ... .-..|+|++.....+.. ++..+.+|||||+.+
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~-~~~~i~~iDtPGh~~ 87 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYET-EKRHYAHVDCPGHAD 87 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecC-CCcEEEEEECCCHHH
Confidence 44568999999999999999999987311 111 11569999988777764 677899999999865
Q ss_pred hhhhccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCc-EEEEEeccCCCCCcchhhHHHHH
Q 005504 433 RAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKG-CLIVVNKWDTIPNKNQQTATYYE 511 (693)
Q Consensus 433 ~~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p-~Ivv~NK~Dl~~~~~~~~~~~~~ 511 (693)
+ ...+...+..+|++++|+|+.++...++..++.++...++| +|+|+||||++..+ ...+.+.
T Consensus 88 f--------------~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~--~~~~~i~ 151 (394)
T PRK12736 88 Y--------------VKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDE--ELLELVE 151 (394)
T ss_pred H--------------HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchH--HHHHHHH
Confidence 4 23556677899999999999999999999999999999999 67899999997432 2333445
Q ss_pred HHHHHHHhcCCC----CcEEEeccccCC--------CHHHHHHHHHHH
Q 005504 512 QDVREKLRALDW----APIVYSTAIAGQ--------SVDKIIVAAEMV 547 (693)
Q Consensus 512 ~~i~~~l~~~~~----~piv~iSA~~g~--------gv~~L~~~i~~~ 547 (693)
+++.+.+...++ +|++++||++|. ++..|++.+.+.
T Consensus 152 ~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~ 199 (394)
T PRK12736 152 MEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEY 199 (394)
T ss_pred HHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHh
Confidence 566666665543 699999999983 455666665543
No 105
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.77 E-value=2.6e-18 Score=166.73 Aligned_cols=155 Identities=25% Similarity=0.293 Sum_probs=110.8
Q ss_pred EEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEec-CeeEEEEecCCcccccCCchhhhhhhhhhhcccCCCC
Q 005504 168 IVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG-EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGI 246 (693)
Q Consensus 168 ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~-~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~g~ 246 (693)
++|++|||||||+|+|.+.+. .+..++++|.++..+.+.+. +..+.+|||||+.......+.
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~---------------- 63 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRG---------------- 63 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCC----------------
Confidence 589999999999999999864 67788999999988888888 999999999998642211111
Q ss_pred chhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCC-----CHH-H-HHHHHHHHhh--------cCCCcEEEEec
Q 005504 247 PLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL-----TAA-D-EEIADWLRKN--------YMDKFIILAVN 311 (693)
Q Consensus 247 ~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~-----~~~-d-~~i~~~L~~~--------~~~~p~ivv~N 311 (693)
+..++...+..+|++++|+|+.+.. ... + ..+...+... ..++|+++|+|
T Consensus 64 ---------------~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~N 128 (176)
T cd01881 64 ---------------LGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLN 128 (176)
T ss_pred ---------------ccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEE
Confidence 1123456678899999999998763 222 1 1222223221 13689999999
Q ss_pred ccCCccchhhhHH---HH-HhcCCCCccccccCCCCHHHHHHHHHhh
Q 005504 312 KCESPRKGIMQVS---EF-WSLGFSPLPISAISGTGTGELLDLVCSE 354 (693)
Q Consensus 312 K~D~~~~~~~~~~---~~-~~~g~~~v~iSA~~g~gi~~Ll~~i~~~ 354 (693)
|+|+......... .. ...+..++++||.+|.|++++++.+...
T Consensus 129 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 129 KIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred chhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 9999754332221 11 2234478999999999999999988754
No 106
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.77 E-value=5.9e-18 Score=161.19 Aligned_cols=153 Identities=29% Similarity=0.391 Sum_probs=111.6
Q ss_pred EEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCCCCc
Q 005504 168 IVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIP 247 (693)
Q Consensus 168 ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~g~~ 247 (693)
|+|++|||||||+|++++.. ..++.++++|.+.....+.+++..+.+|||||+........+
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~----------------- 62 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSED----------------- 62 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChh-----------------
Confidence 58999999999999999976 677888999999998888999999999999999753321110
Q ss_pred hhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCccchhh--hHHH
Q 005504 248 LATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM--QVSE 325 (693)
Q Consensus 248 ~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~~~--~~~~ 325 (693)
..+...+... ..+|++++|+|+.+.. ....+...+.+ .++|+++|+||+|+...... ....
T Consensus 63 ------------~~~~~~~~~~-~~~d~vi~v~d~~~~~--~~~~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~ 125 (158)
T cd01879 63 ------------EKVARDFLLG-EKPDLIVNVVDATNLE--RNLYLTLQLLE--LGLPVVVALNMIDEAEKRGIKIDLDK 125 (158)
T ss_pred ------------HHHHHHHhcC-CCCcEEEEEeeCCcch--hHHHHHHHHHH--cCCCEEEEEehhhhcccccchhhHHH
Confidence 0111111122 4899999999998642 22344445554 47999999999998653211 1112
Q ss_pred H-HhcCCCCccccccCCCCHHHHHHHHHhhc
Q 005504 326 F-WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (693)
Q Consensus 326 ~-~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l 355 (693)
+ ..++.+++++||.+|.|+.++++.+.+..
T Consensus 126 ~~~~~~~~~~~iSa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 126 LSELLGVPVVPTSARKGEGIDELKDAIAELA 156 (158)
T ss_pred HHHhhCCCeEEEEccCCCCHHHHHHHHHHHh
Confidence 2 23467899999999999999999988754
No 107
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.77 E-value=8.3e-18 Score=192.53 Aligned_cols=161 Identities=22% Similarity=0.216 Sum_probs=125.5
Q ss_pred cEEEeecCCCCChhhHHHHHhcCC--CceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGED--RTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~--~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
..|+++|++|+|||||+|+|.|.. ........|+|.+.....+.+ ++..+.+|||||+.++ ..
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~-~~~~v~~iDtPGhe~f--------------~~ 65 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPL-PDYRLGFIDVPGHEKF--------------IS 65 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEe-CCEEEEEEECCCHHHH--------------HH
Confidence 369999999999999999999854 222233568899887777775 5688999999998654 23
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCc-EEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCC---CCc
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKG-CLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD---WAP 525 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p-~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~---~~p 525 (693)
.+...+..+|++++|+|+.++...+..+.+..+...++| +|+|+||+|+++.. ..+...+++.+.+.... ..|
T Consensus 66 ~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~---~~~~~~~ei~~~l~~~~~~~~~~ 142 (581)
T TIGR00475 66 NAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEE---EIKRTEMFMKQILNSYIFLKNAK 142 (581)
T ss_pred HHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHH---HHHHHHHHHHHHHHHhCCCCCCc
Confidence 456678899999999999999888888888888888999 99999999997532 22233444544444322 579
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHH
Q 005504 526 IVYSTAIAGQSVDKIIVAAEMVDKE 550 (693)
Q Consensus 526 iv~iSA~~g~gv~~L~~~i~~~~~~ 550 (693)
++++||++|.|++++++.+.+....
T Consensus 143 ii~vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 143 IFKTSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred EEEEeCCCCCCchhHHHHHHHHHHh
Confidence 9999999999999999998776544
No 108
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.76 E-value=1.1e-17 Score=192.05 Aligned_cols=159 Identities=20% Similarity=0.269 Sum_probs=126.4
Q ss_pred EEEeecCCCCChhhHHHHHhcCC--CceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHH
Q 005504 373 AIAIVGRPNVGKSSILNALVGED--RTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (693)
Q Consensus 373 ~I~ivG~~n~GKSSLin~llg~~--~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (693)
-|+++|++|+|||||+++|.|.+ +.......|+|.+.....+...++..+.+|||||+.++ ...
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~f--------------i~~ 67 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKF--------------LSN 67 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHH--------------HHH
Confidence 58999999999999999999853 23333446999987766666556778999999999654 235
Q ss_pred HHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCc-EEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCC--CCcEE
Q 005504 451 AFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKG-CLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD--WAPIV 527 (693)
Q Consensus 451 ~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p-~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~--~~piv 527 (693)
+...+..+|++++|+|+.++...++.+.+..+...++| +|+|+||+|+++. ...+...+++.+.+...+ ..|++
T Consensus 68 m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~---~~~~~v~~ei~~~l~~~~~~~~~ii 144 (614)
T PRK10512 68 MLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDE---ARIAEVRRQVKAVLREYGFAEAKLF 144 (614)
T ss_pred HHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCH---HHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 66678899999999999999999999999888888888 5799999999753 223344556666655433 47999
Q ss_pred EeccccCCCHHHHHHHHHHHH
Q 005504 528 YSTAIAGQSVDKIIVAAEMVD 548 (693)
Q Consensus 528 ~iSA~~g~gv~~L~~~i~~~~ 548 (693)
++||++|.|+++|++.|.+..
T Consensus 145 ~VSA~tG~gI~~L~~~L~~~~ 165 (614)
T PRK10512 145 VTAATEGRGIDALREHLLQLP 165 (614)
T ss_pred EEeCCCCCCCHHHHHHHHHhh
Confidence 999999999999999998764
No 109
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.76 E-value=1.9e-17 Score=158.08 Aligned_cols=161 Identities=34% Similarity=0.496 Sum_probs=121.0
Q ss_pred CCeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005504 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (693)
Q Consensus 163 ~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (693)
..+|+++|.+|+|||||+|++++.+.+.+...+.+++..........+..+.+|||||+........
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~------------- 69 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLG------------- 69 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHH-------------
Confidence 3579999999999999999999998777777778888777766666778899999999875221100
Q ss_pred CCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCccch--h
Q 005504 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKG--I 320 (693)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~--~ 320 (693)
..+.......+..+|++++|+|+.++.+..+..+.+.+.. .+.|+++|+||+|+.... .
T Consensus 70 -----------------~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~ 130 (168)
T cd04163 70 -----------------ERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKK--SKTPVILVLNKIDLVKDKEDL 130 (168)
T ss_pred -----------------HHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHH--hCCCEEEEEEchhccccHHHH
Confidence 1123445567888999999999998867777777777766 368999999999987321 1
Q ss_pred hhHHH-HHhcC--CCCccccccCCCCHHHHHHHHHhhc
Q 005504 321 MQVSE-FWSLG--FSPLPISAISGTGTGELLDLVCSEL 355 (693)
Q Consensus 321 ~~~~~-~~~~g--~~~v~iSA~~g~gi~~Ll~~i~~~l 355 (693)
..... +.... .+++++|+.++.|+++|++.|.+.+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~~ 168 (168)
T cd04163 131 LPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKYL 168 (168)
T ss_pred HHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhhC
Confidence 11111 22222 3689999999999999999987653
No 110
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.76 E-value=8e-18 Score=169.42 Aligned_cols=159 Identities=20% Similarity=0.171 Sum_probs=107.1
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCC--CeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
+||+++|.+|||||||+|++++...... ..++++.+.....+...++ ..+.+|||||+.++..+
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~-~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~------------- 68 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEV-SDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSI------------- 68 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC-CCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHH-------------
Confidence 6999999999999999999997653322 2233344444444433233 36889999998654221
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHHh----CCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~~----~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~ 524 (693)
...+++.+|++|+|+|.++..+..+. .|+..+.+. ..|+++|+||+|+........ + ....+. ... ..
T Consensus 69 -~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~-~-~~~~~~---~~~-~~ 141 (211)
T cd04111 69 -TRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTR-E-EAEKLA---KDL-GM 141 (211)
T ss_pred -HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCH-H-HHHHHH---HHh-CC
Confidence 23367899999999999886554443 355555432 467899999999965322111 1 112222 222 37
Q ss_pred cEEEeccccCCCHHHHHHHHHHHHHHh
Q 005504 525 PIVYSTAIAGQSVDKIIVAAEMVDKER 551 (693)
Q Consensus 525 piv~iSA~~g~gv~~L~~~i~~~~~~~ 551 (693)
+++++||++|.|++++|+.|.+...+.
T Consensus 142 ~~~e~Sak~g~~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 142 KYIETSARTGDNVEEAFELLTQEIYER 168 (211)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 899999999999999999998764443
No 111
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.76 E-value=1.6e-17 Score=160.17 Aligned_cols=155 Identities=20% Similarity=0.196 Sum_probs=105.3
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCC--CeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
+||+++|.+|||||||++++++.... ....++++.+.....+.. ++ ..+.+|||||+.++...
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~------------- 67 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYT-ESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTI------------- 67 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEE-CCEEEEEEEEECCCcHhHHHH-------------
Confidence 68999999999999999999976432 233344444443334433 33 36899999998664221
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHH---hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCc
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~---~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~p 525 (693)
....++.+|++|+|+|+++..+.... .|+..+.. .+.|+++|+||+|+....... .+ +...... ....+
T Consensus 68 -~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~-~~----~~~~~~~-~~~~~ 140 (166)
T cd01869 68 -TSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVD-YS----EAQEFAD-ELGIP 140 (166)
T ss_pred -HHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCC-HH----HHHHHHH-HcCCe
Confidence 12356899999999999886444443 35555544 368999999999986543221 11 1111222 22468
Q ss_pred EEEeccccCCCHHHHHHHHHHHH
Q 005504 526 IVYSTAIAGQSVDKIIVAAEMVD 548 (693)
Q Consensus 526 iv~iSA~~g~gv~~L~~~i~~~~ 548 (693)
++++||++|.|++++|..+.+..
T Consensus 141 ~~~~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 141 FLETSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred EEEEECCCCcCHHHHHHHHHHHH
Confidence 99999999999999999987654
No 112
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.76 E-value=7.7e-18 Score=161.91 Aligned_cols=154 Identities=20% Similarity=0.240 Sum_probs=102.7
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCcee-cCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIV-SPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v-~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (693)
+||+++|.+|||||||++++++...... .+..+.+.......+. .....+.+|||||+.++...
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~-------------- 65 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFE-GKTILVDFWDTAGQERFQTM-------------- 65 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEEC-CEEEEEEEEeCCCchhhhhh--------------
Confidence 4899999999999999999987542211 1111112111111121 12346889999998765332
Q ss_pred HHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHHh--CCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcEE
Q 005504 451 AFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIV 527 (693)
Q Consensus 451 ~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~~--~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~piv 527 (693)
...+++.+|++|+|+|++++.+.++. .|+..+.+. ++|+++|+||+|+.... . . ...+ +....+.+++
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~---~-~----~~~~-~~~~~~~~~~ 136 (161)
T cd04124 66 HASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSV---T-Q----KKFN-FAEKHNLPLY 136 (161)
T ss_pred hHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhH---H-H----HHHH-HHHHcCCeEE
Confidence 12367899999999999887665553 477777654 78999999999984321 1 1 1111 1111247899
Q ss_pred EeccccCCCHHHHHHHHHHHHH
Q 005504 528 YSTAIAGQSVDKIIVAAEMVDK 549 (693)
Q Consensus 528 ~iSA~~g~gv~~L~~~i~~~~~ 549 (693)
++||++|.|++++++.+.+...
T Consensus 137 ~~Sa~~~~gv~~l~~~l~~~~~ 158 (161)
T cd04124 137 YVSAADGTNVVKLFQDAIKLAV 158 (161)
T ss_pred EEeCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999986543
No 113
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.76 E-value=4.8e-18 Score=164.73 Aligned_cols=149 Identities=18% Similarity=0.139 Sum_probs=99.1
Q ss_pred CcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHH
Q 005504 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (693)
Q Consensus 371 ~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (693)
.++|+++|.+|||||||+++|........ .|++..+.. .+.. ++..+.+|||||+.++...
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~~--~~t~g~~~~--~~~~-~~~~~~l~Dt~G~~~~~~~-------------- 69 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSVTT--IPTVGFNVE--TVTY-KNVKFNVWDVGGQDKIRPL-------------- 69 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCccc--cCCcccceE--EEEE-CCEEEEEEECCCCHHHHHH--------------
Confidence 47999999999999999999986543322 333333322 2232 5678999999998664222
Q ss_pred HHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHH----hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHh--cC--
Q 005504 451 AFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLR--AL-- 521 (693)
Q Consensus 451 ~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~----~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~--~~-- 521 (693)
...+++.||++|+|+|+++..+..+. .++..+.. .++|+++|+||+|+..... .+ ++.+.+. ..
T Consensus 70 ~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~----~i~~~~~~~~~~~ 142 (168)
T cd04149 70 WRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMK---PH----EIQEKLGLTRIRD 142 (168)
T ss_pred HHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCC---HH----HHHHHcCCCccCC
Confidence 12357899999999999885333222 23333322 3689999999999864321 12 2222221 11
Q ss_pred CCCcEEEeccccCCCHHHHHHHHH
Q 005504 522 DWAPIVYSTAIAGQSVDKIIVAAE 545 (693)
Q Consensus 522 ~~~piv~iSA~~g~gv~~L~~~i~ 545 (693)
...+++++||++|.|++++|++|.
T Consensus 143 ~~~~~~~~SAk~g~gv~~~~~~l~ 166 (168)
T cd04149 143 RNWYVQPSCATSGDGLYEGLTWLS 166 (168)
T ss_pred CcEEEEEeeCCCCCChHHHHHHHh
Confidence 123689999999999999999885
No 114
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.76 E-value=1.1e-17 Score=164.04 Aligned_cols=153 Identities=25% Similarity=0.321 Sum_probs=116.4
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeee---------------cCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCch
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIV---------------VDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQP 229 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v---------------~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~ 229 (693)
+|+++|.+|+|||||+|+|++...... ....++|.+.......+.+..+.+|||||+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~----- 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDF----- 75 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHH-----
Confidence 489999999999999999988753221 123456667666677788889999999998531
Q ss_pred hhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEE
Q 005504 230 NIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILA 309 (693)
Q Consensus 230 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv 309 (693)
...+..++..+|++++|+|+.++.......++..++. .++|+++|
T Consensus 76 ---------------------------------~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~--~~~~i~iv 120 (189)
T cd00881 76 ---------------------------------SSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIARE--GGLPIIVA 120 (189)
T ss_pred ---------------------------------HHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH--CCCCeEEE
Confidence 2345567789999999999999888888888888776 58999999
Q ss_pred ecccCCccchh-h----hHHHHHh---------------cCCCCccccccCCCCHHHHHHHHHhhccc
Q 005504 310 VNKCESPRKGI-M----QVSEFWS---------------LGFSPLPISAISGTGTGELLDLVCSELKK 357 (693)
Q Consensus 310 ~NK~D~~~~~~-~----~~~~~~~---------------~g~~~v~iSA~~g~gi~~Ll~~i~~~l~~ 357 (693)
+||+|+..... . ...+... ...+++++||++|.|++++++.|...+++
T Consensus 121 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~~ 188 (189)
T cd00881 121 INKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLPP 188 (189)
T ss_pred EECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCCC
Confidence 99999975211 1 1111111 13468999999999999999999988763
No 115
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.76 E-value=2.1e-17 Score=159.69 Aligned_cols=158 Identities=21% Similarity=0.188 Sum_probs=104.4
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeC-CCCCeEEEEeCccccchhhhccCCChhhHhHHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTG-PEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~-~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (693)
.||+++|.+|||||||+|++.+.... ..++.++ +........ .....+.+|||||..+... .
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------------~ 63 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFP--ENVPRVL-PEITIPADVTPERVPTTIVDTSSRPQDRA--------------N 63 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCC--ccCCCcc-cceEeeeeecCCeEEEEEEeCCCchhhhH--------------H
Confidence 38999999999999999999976432 2233322 222222222 1345789999999854311 2
Q ss_pred HHHHHhcCCeEEEEecccccCCHHHH--HHHHHHHH--hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcE
Q 005504 451 AFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQ--EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPI 526 (693)
Q Consensus 451 ~~~~i~~aDvvllViDa~~~~~~~d~--~~~~~l~~--~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~pi 526 (693)
....+..+|++++|+|++++.+.++. .|+..+.. .+.|+++|+||+|+.+.......++....+...+.. ..++
T Consensus 64 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~ 141 (166)
T cd01893 64 LAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFRE--IETC 141 (166)
T ss_pred HhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhc--ccEE
Confidence 23356899999999999887666653 46665654 368999999999996543211111111122222222 1479
Q ss_pred EEeccccCCCHHHHHHHHHHHH
Q 005504 527 VYSTAIAGQSVDKIIVAAEMVD 548 (693)
Q Consensus 527 v~iSA~~g~gv~~L~~~i~~~~ 548 (693)
+++||++|.|++++|+.+.++.
T Consensus 142 ~e~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 142 VECSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred EEeccccccCHHHHHHHHHHHh
Confidence 9999999999999999987653
No 116
>PLN03127 Elongation factor Tu; Provisional
Probab=99.76 E-value=1.7e-17 Score=184.11 Aligned_cols=162 Identities=19% Similarity=0.248 Sum_probs=122.4
Q ss_pred cCCcEEEeecCCCCChhhHHHHHhc------CCCceec---------CCCCcccceEEEEEeCCCCCeEEEEeCccccch
Q 005504 369 NRIPAIAIVGRPNVGKSSILNALVG------EDRTIVS---------PISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKR 433 (693)
Q Consensus 369 ~~~~~I~ivG~~n~GKSSLin~llg------~~~~~v~---------~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~ 433 (693)
...++|+++|++|+|||||+++|++ ..+.... -..|+|++.....+.. ++..+.++||||+.++
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYET-AKRHYAHVDCPGHADY 137 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcC-CCeEEEEEECCCccch
Confidence 4558999999999999999999973 2222221 2269999998888874 6778999999999653
Q ss_pred hhhccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCc-EEEEEeccCCCCCcchhhHHHHHH
Q 005504 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKG-CLIVVNKWDTIPNKNQQTATYYEQ 512 (693)
Q Consensus 434 ~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p-~Ivv~NK~Dl~~~~~~~~~~~~~~ 512 (693)
+..+...+..+|++++|+|+.++...|+.+++..+...++| +|+|+||||+++.. ...+.+.+
T Consensus 138 --------------~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~--~~~~~i~~ 201 (447)
T PLN03127 138 --------------VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDE--ELLELVEM 201 (447)
T ss_pred --------------HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHH--HHHHHHHH
Confidence 23455566789999999999999999999999999999999 57899999997532 23344445
Q ss_pred HHHHHHhcCC----CCcEEEeccc---cCCC-------HHHHHHHHHHH
Q 005504 513 DVREKLRALD----WAPIVYSTAI---AGQS-------VDKIIVAAEMV 547 (693)
Q Consensus 513 ~i~~~l~~~~----~~piv~iSA~---~g~g-------v~~L~~~i~~~ 547 (693)
++.+.+.+++ .+|++++||. +|.| +..|++++.+.
T Consensus 202 ~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~ 250 (447)
T PLN03127 202 ELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEY 250 (447)
T ss_pred HHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHh
Confidence 6666665543 3789999886 4555 56677766654
No 117
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.76 E-value=1.2e-17 Score=159.37 Aligned_cols=151 Identities=19% Similarity=0.237 Sum_probs=102.6
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCC--eEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~--~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
.||+++|.+|||||||+|++++... ...+.+|+.+.....+.. ++. .+.+|||||+.++..+
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~l------------- 65 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAM------------- 65 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--cCCcCCcchheEEEEEEE-CCEEEEEEEEECCCCcchHHH-------------
Confidence 5899999999999999999997642 233444555444444443 333 4778999998664322
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHH----hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~----~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~ 524 (693)
...+++.+|++++|+|.++..+.++. .++..+.+ .++|+++|+||+|+..... . .. ...+..... ..
T Consensus 66 -~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~-~-~~----~~~~~~~~~-~~ 137 (162)
T cd04138 66 -RDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTV-S-SR----QGQDLAKSY-GI 137 (162)
T ss_pred -HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccee-c-HH----HHHHHHHHh-CC
Confidence 12366889999999999875444443 24444443 3789999999999965221 1 11 111222222 46
Q ss_pred cEEEeccccCCCHHHHHHHHHH
Q 005504 525 PIVYSTAIAGQSVDKIIVAAEM 546 (693)
Q Consensus 525 piv~iSA~~g~gv~~L~~~i~~ 546 (693)
+++++||++|.|++++|+.+.+
T Consensus 138 ~~~~~Sa~~~~gi~~l~~~l~~ 159 (162)
T cd04138 138 PYIETSAKTRQGVEEAFYTLVR 159 (162)
T ss_pred eEEEecCCCCCCHHHHHHHHHH
Confidence 8999999999999999998864
No 118
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.76 E-value=3e-17 Score=154.74 Aligned_cols=162 Identities=30% Similarity=0.436 Sum_probs=122.2
Q ss_pred eecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHHHHHHH
Q 005504 376 IVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAI 455 (693)
Q Consensus 376 ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i 455 (693)
++|.+|+|||||+|+|++.........+++|.+.....+....+..+.+|||||+....... ......+...+
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~-------~~~~~~~~~~~ 73 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLG-------REREELARRVL 73 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccch-------hhHHHHHHHHH
Confidence 58999999999999999987776788888888887777665346799999999997753321 11123445577
Q ss_pred hcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcEEEeccccCC
Q 005504 456 RRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQ 535 (693)
Q Consensus 456 ~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~piv~iSA~~g~ 535 (693)
+.+|++++|+|+..........+.......++|+++|+||+|+....... ................+++++||++|.
T Consensus 74 ~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~sa~~~~ 150 (163)
T cd00880 74 ERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEE---ELLELRLLILLLLLGLPVIAVSALTGE 150 (163)
T ss_pred HhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHH---HHHHHHHhhcccccCCceEEEeeeccC
Confidence 89999999999999887777766777777899999999999997643221 111111222233346899999999999
Q ss_pred CHHHHHHHHHHH
Q 005504 536 SVDKIIVAAEMV 547 (693)
Q Consensus 536 gv~~L~~~i~~~ 547 (693)
|++++++.+.+.
T Consensus 151 ~v~~l~~~l~~~ 162 (163)
T cd00880 151 GIDELREALIEA 162 (163)
T ss_pred CHHHHHHHHHhh
Confidence 999999988753
No 119
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.76 E-value=2e-17 Score=163.75 Aligned_cols=157 Identities=17% Similarity=0.147 Sum_probs=104.4
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCC--CeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
.||+++|.+|||||||++++.+.........+++..+.....+.. ++ ..+.+|||||+.++...
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~------------- 66 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTV-DGVKVKLQIWDTAGQERFRSV------------- 66 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEE-CCEEEEEEEEeCCCcHHHHHh-------------
Confidence 489999999999999999999765322222333333333223332 33 37899999998654221
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHHh---CCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCc
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~~---~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~p 525 (693)
....++.+|++|+|+|+++..+.++. .|+..+.+. ++|+++|+||+|+....... .++ .+.+.+ ..+.+
T Consensus 67 -~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~-~~~-~~~l~~----~~~~~ 139 (191)
T cd04112 67 -THAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVK-RED-GERLAK----EYGVP 139 (191)
T ss_pred -hHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccC-HHH-HHHHHH----HcCCe
Confidence 12356889999999999876544433 355555543 67999999999996432211 111 112221 12468
Q ss_pred EEEeccccCCCHHHHHHHHHHHHH
Q 005504 526 IVYSTAIAGQSVDKIIVAAEMVDK 549 (693)
Q Consensus 526 iv~iSA~~g~gv~~L~~~i~~~~~ 549 (693)
++++||++|.|++++|..+.+...
T Consensus 140 ~~e~Sa~~~~~v~~l~~~l~~~~~ 163 (191)
T cd04112 140 FMETSAKTGLNVELAFTAVAKELK 163 (191)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999986643
No 120
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.76 E-value=1.6e-17 Score=160.55 Aligned_cols=157 Identities=18% Similarity=0.110 Sum_probs=105.3
Q ss_pred CcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCC-CCeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 371 ~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~-g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
.+||+++|.+|||||||++++.+... .....+.++.+.....+...+ ...+.+|||||+.++...
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~------------- 68 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSF-NPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTI------------- 68 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcC-CcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHH-------------
Confidence 47999999999999999999997642 222233333333222333211 247899999998654221
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHH---hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCc
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~---~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~p 525 (693)
....++.+|++|+|+|++++.+.++. .|+..+.. .+.|+++|+||+|+.+..... .+ +..+.... ...+
T Consensus 69 -~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~----~~~~~~~~-~~~~ 141 (167)
T cd01867 69 -TTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVS-KE----EGEALADE-YGIK 141 (167)
T ss_pred -HHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCC-HH----HHHHHHHH-cCCE
Confidence 22467899999999999887655543 35555554 368999999999997532211 11 12222222 2468
Q ss_pred EEEeccccCCCHHHHHHHHHHHH
Q 005504 526 IVYSTAIAGQSVDKIIVAAEMVD 548 (693)
Q Consensus 526 iv~iSA~~g~gv~~L~~~i~~~~ 548 (693)
++++||++|.|++++|+.+.+..
T Consensus 142 ~~~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 142 FLETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999987654
No 121
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.76 E-value=1.1e-17 Score=162.67 Aligned_cols=149 Identities=26% Similarity=0.307 Sum_probs=101.8
Q ss_pred CcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHH
Q 005504 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (693)
Q Consensus 371 ~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (693)
.++|+++|.+|||||||+++|.+.....+.+..|... ..+.. ++..+.+|||||+.++.. .
T Consensus 14 ~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~----~~~~~-~~~~l~l~D~~G~~~~~~--------------~ 74 (173)
T cd04154 14 EMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQI----KTLEY-EGYKLNIWDVGGQKTLRP--------------Y 74 (173)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccce----EEEEE-CCEEEEEEECCCCHHHHH--------------H
Confidence 4799999999999999999999875433333333222 23333 467899999999865322 1
Q ss_pred HHHHHhcCCeEEEEecccccCCHHHH-HHHHHHH----HhCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhc----C
Q 005504 451 AFRAIRRSDVVALVIEAMACITEQDC-RIAERIE----QEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRA----L 521 (693)
Q Consensus 451 ~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~----~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~----~ 521 (693)
...+++.+|++++|+|++++.+..+. .++..+. ..++|+++|+||+|+..... .+ .+.+.+.. .
T Consensus 75 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~---~~----~~~~~~~~~~~~~ 147 (173)
T cd04154 75 WRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALS---EE----EIREALELDKISS 147 (173)
T ss_pred HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCC---HH----HHHHHhCccccCC
Confidence 23357899999999999886433332 2333332 25789999999999965321 11 22222221 2
Q ss_pred CCCcEEEeccccCCCHHHHHHHHH
Q 005504 522 DWAPIVYSTAIAGQSVDKIIVAAE 545 (693)
Q Consensus 522 ~~~piv~iSA~~g~gv~~L~~~i~ 545 (693)
...+++++||++|.|++++++++.
T Consensus 148 ~~~~~~~~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 148 HHWRIQPCSAVTGEGLLQGIDWLV 171 (173)
T ss_pred CceEEEeccCCCCcCHHHHHHHHh
Confidence 346899999999999999998874
No 122
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.76 E-value=1.4e-17 Score=160.19 Aligned_cols=153 Identities=22% Similarity=0.220 Sum_probs=105.9
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCC--eEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~--~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
.||+++|.+|||||||+++++... ....+++|+.+.....+.. ++. .+.+|||||+.++..+.
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~--~~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~------------ 66 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGI--FVEKYDPTIEDSYRKQVEV-DGQQCMLEILDTAGTEQFTAMR------------ 66 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCC--CCcccCCcchheEEEEEEE-CCEEEEEEEEECCCcccchhHH------------
Confidence 589999999999999999998542 2344556666655545554 333 56799999987653321
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHH----hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~----~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~ 524 (693)
...++.+|++++|+|.++..+.++. .++..+.. .+.|+++|+||+|+....... ... .+.+.+. . ..
T Consensus 67 --~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~-~~~~~~~---~-~~ 138 (164)
T cd04175 67 --DLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVG-KEQ-GQNLARQ---W-GC 138 (164)
T ss_pred --HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEc-HHH-HHHHHHH---h-CC
Confidence 2257889999999999876544443 35555543 368999999999996532211 111 1122222 2 36
Q ss_pred cEEEeccccCCCHHHHHHHHHHH
Q 005504 525 PIVYSTAIAGQSVDKIIVAAEMV 547 (693)
Q Consensus 525 piv~iSA~~g~gv~~L~~~i~~~ 547 (693)
+++++||++|.|+++++.++.+.
T Consensus 139 ~~~~~Sa~~~~~v~~~~~~l~~~ 161 (164)
T cd04175 139 AFLETSAKAKINVNEIFYDLVRQ 161 (164)
T ss_pred EEEEeeCCCCCCHHHHHHHHHHH
Confidence 89999999999999999998753
No 123
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.76 E-value=1.9e-17 Score=165.35 Aligned_cols=157 Identities=15% Similarity=0.107 Sum_probs=105.3
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCC--CCCeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP--EGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~--~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
+||+++|.+|||||||+++|++.... ....+....+.....+... ....+.+|||||..++..+
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~-~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~------------- 66 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFS-QHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGM------------- 66 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhh-------------
Confidence 48999999999999999999976422 1122322233333333332 2346899999998654221
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHHH-HHHHHHH-------hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcC
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ-------EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRAL 521 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~~-~~~~l~~-------~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~ 521 (693)
...+++.+|++|+|+|+++..+.+... |+..+.. .++|+|+|+||+|+.+.... .. +++.+.....
T Consensus 67 -~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~----~~~~~~~~~~ 140 (201)
T cd04107 67 -TRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAK-DG----EQMDQFCKEN 140 (201)
T ss_pred -HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccccccc-CH----HHHHHHHHHc
Confidence 233678999999999998876555543 4444432 46799999999999642221 11 2233333333
Q ss_pred CCCcEEEeccccCCCHHHHHHHHHHHH
Q 005504 522 DWAPIVYSTAIAGQSVDKIIVAAEMVD 548 (693)
Q Consensus 522 ~~~piv~iSA~~g~gv~~L~~~i~~~~ 548 (693)
+..+++++||++|.|++++|+.+.+..
T Consensus 141 ~~~~~~e~Sak~~~~v~e~f~~l~~~l 167 (201)
T cd04107 141 GFIGWFETSAKEGINIEEAMRFLVKNI 167 (201)
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 446899999999999999999998654
No 124
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.76 E-value=7.1e-18 Score=170.75 Aligned_cols=151 Identities=20% Similarity=0.277 Sum_probs=110.8
Q ss_pred EEEeecCCCCChhhHHHHHhcCCCce------------------------------ecCCCCcccceEEEEEeCCCCCeE
Q 005504 373 AIAIVGRPNVGKSSILNALVGEDRTI------------------------------VSPISGTTRDAIDTEFTGPEGQKF 422 (693)
Q Consensus 373 ~I~ivG~~n~GKSSLin~llg~~~~~------------------------------v~~~~gtT~d~~~~~~~~~~g~~i 422 (693)
+|+++|++++|||||+.+|+.....+ .....|+|++.....+.. .+..+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~-~~~~i 79 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET-EKYRF 79 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee-CCeEE
Confidence 58999999999999999997321110 111348999999888885 78899
Q ss_pred EEEeCccccchhhhccCCChhhHhHHHHHHHHHhcCCeEEEEeccccc-------CCHHHHHHHHHHHHhC-CcEEEEEe
Q 005504 423 RLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMAC-------ITEQDCRIAERIEQEG-KGCLIVVN 494 (693)
Q Consensus 423 ~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~-------~~~~d~~~~~~l~~~~-~p~Ivv~N 494 (693)
.+|||||+.++. ..+..++..+|++|+|+|++++ ...+....+..+...+ +|+|+|+|
T Consensus 80 ~liDtpG~~~~~--------------~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvN 145 (219)
T cd01883 80 TILDAPGHRDFV--------------PNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVN 145 (219)
T ss_pred EEEECCChHHHH--------------HHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEE
Confidence 999999986542 2445577889999999999883 4445566666666666 68999999
Q ss_pred ccCCCCC-cchhhHHHHHHHHHHHHhcCCC----CcEEEeccccCCCHH
Q 005504 495 KWDTIPN-KNQQTATYYEQDVREKLRALDW----APIVYSTAIAGQSVD 538 (693)
Q Consensus 495 K~Dl~~~-~~~~~~~~~~~~i~~~l~~~~~----~piv~iSA~~g~gv~ 538 (693)
|+|+... ......+.+.+.+...+...+. .|++++||++|.|++
T Consensus 146 K~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 146 KMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred ccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 9999742 1223344555666656655443 689999999999987
No 125
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.76 E-value=1.5e-17 Score=159.81 Aligned_cols=154 Identities=19% Similarity=0.200 Sum_probs=103.7
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCC--CeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
.||+++|.+|||||||+|++++... ...+.+|+.+.....+.. ++ ..+.+|||||+.++..+
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~~------------- 64 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHF--VDDYDPTIEDSYRKQIEI-DGEVCLLDILDTAGQEEFSAM------------- 64 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcC--CcccCCchhhhEEEEEEE-CCEEEEEEEEECCCcccchHH-------------
Confidence 4899999999999999999997653 233444555544444433 33 36789999998765322
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHH----hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~----~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~ 524 (693)
....++.+|++++|+|+++..+.+.. .+...+.+ .++|+++|+||+|+....... .+ ........ ...
T Consensus 65 -~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~-~~----~~~~~~~~-~~~ 137 (164)
T smart00173 65 -RDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVS-TE----EGKELARQ-WGC 137 (164)
T ss_pred -HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEc-HH----HHHHHHHH-cCC
Confidence 12356889999999999876444333 23344433 368999999999996532211 11 11112222 237
Q ss_pred cEEEeccccCCCHHHHHHHHHHHH
Q 005504 525 PIVYSTAIAGQSVDKIIVAAEMVD 548 (693)
Q Consensus 525 piv~iSA~~g~gv~~L~~~i~~~~ 548 (693)
+++++||++|.|++++++.+.+..
T Consensus 138 ~~~~~Sa~~~~~i~~l~~~l~~~~ 161 (164)
T smart00173 138 PFLETSAKERVNVDEAFYDLVREI 161 (164)
T ss_pred EEEEeecCCCCCHHHHHHHHHHHH
Confidence 899999999999999999987643
No 126
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.76 E-value=2.4e-17 Score=158.86 Aligned_cols=155 Identities=15% Similarity=0.155 Sum_probs=104.0
Q ss_pred CcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCC--CeEEEEeCccccchhhhccCCChhhHhHH
Q 005504 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (693)
Q Consensus 371 ~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (693)
.+||+++|.+|+|||||++++.+...... ..+..+.+.....+.. ++ ..+.+|||||+.++..
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~------------- 67 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSER-QGNTIGVDFTMKTLEI-EGKRVKLQIWDTAGQERFRT------------- 67 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCccc-CCCccceEEEEEEEEE-CCEEEEEEEEECCChHHHHH-------------
Confidence 37999999999999999999986542211 1122222333333333 33 3789999999865422
Q ss_pred HHHHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHH---hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005504 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (693)
Q Consensus 449 ~~~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~---~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~ 524 (693)
.....++.+|++++|+|++++.+.+.. .|+..+.. .+.|+++|+||+|+....... . ++..+.....+..
T Consensus 68 -~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~-~----~~~~~~~~~~~~~ 141 (165)
T cd01864 68 -ITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVL-F----EEACTLAEKNGML 141 (165)
T ss_pred -HHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccC-H----HHHHHHHHHcCCc
Confidence 123457889999999999887655443 46666654 367999999999996543211 1 1222222333335
Q ss_pred cEEEeccccCCCHHHHHHHHHH
Q 005504 525 PIVYSTAIAGQSVDKIIVAAEM 546 (693)
Q Consensus 525 piv~iSA~~g~gv~~L~~~i~~ 546 (693)
+++++||++|.|++++++.+.+
T Consensus 142 ~~~e~Sa~~~~~v~~~~~~l~~ 163 (165)
T cd01864 142 AVLETSAKESQNVEEAFLLMAT 163 (165)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999999998865
No 127
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.76 E-value=2.3e-17 Score=159.68 Aligned_cols=157 Identities=17% Similarity=0.117 Sum_probs=105.0
Q ss_pred CcEEEeecCCCCChhhHHHHHhcCCCcee-cCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 371 IPAIAIVGRPNVGKSSILNALVGEDRTIV-SPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 371 ~~~I~ivG~~n~GKSSLin~llg~~~~~v-~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
..||+++|.+|||||||+|++++...... ....|.+.......+.. ....+.+|||||..++..
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~-------------- 68 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDG-KQIKLQIWDTAGQESFRS-------------- 68 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC-EEEEEEEEECCCcHHHHH--------------
Confidence 37999999999999999999997653322 22223333223222221 234789999999755322
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHH---hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCc
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~---~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~p 525 (693)
....+++.+|++|+|+|++++.+.++. .|+..+.. .+.|+|+|+||+|+....... .+ +........ +.+
T Consensus 69 ~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~-~~----~~~~~~~~~-~~~ 142 (168)
T cd01866 69 ITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVS-YE----EGEAFAKEH-GLI 142 (168)
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCC-HH----HHHHHHHHc-CCE
Confidence 123467899999999999876555544 35555554 368999999999997432211 11 122222222 478
Q ss_pred EEEeccccCCCHHHHHHHHHHHH
Q 005504 526 IVYSTAIAGQSVDKIIVAAEMVD 548 (693)
Q Consensus 526 iv~iSA~~g~gv~~L~~~i~~~~ 548 (693)
++++||++|.|++++|..+.+..
T Consensus 143 ~~e~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 143 FMETSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998886553
No 128
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.76 E-value=1.4e-17 Score=164.84 Aligned_cols=153 Identities=22% Similarity=0.249 Sum_probs=104.2
Q ss_pred EEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCC--eEEEEeCccccchhhhccCCChhhHhHHHH
Q 005504 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (693)
Q Consensus 373 ~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~--~i~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (693)
+|+++|.+|||||||+++|.+... ...+++|+.+........ ++. .+.+|||||..++..+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f--~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~-------------- 63 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHF--VETYDPTIEDSYRKQVVV-DGQPCMLEVLDTAGQEEYTAL-------------- 63 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--CccCCCchHhhEEEEEEE-CCEEEEEEEEECCCchhhHHH--------------
Confidence 589999999999999999986542 233445554444333333 444 5889999998664322
Q ss_pred HHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHH------hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005504 451 AFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ------EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (693)
Q Consensus 451 ~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~------~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~ 523 (693)
...+++.+|++|+|+|.++..+.... .|+..+.. .++|+|+|+||+|+........ . ...+..... +
T Consensus 64 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~-~----~~~~~~~~~-~ 137 (190)
T cd04144 64 RDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVST-E----EGAALARRL-G 137 (190)
T ss_pred HHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCH-H----HHHHHHHHh-C
Confidence 12367899999999999886555543 35555543 3689999999999965332211 1 111111222 3
Q ss_pred CcEEEeccccCCCHHHHHHHHHHHH
Q 005504 524 APIVYSTAIAGQSVDKIIVAAEMVD 548 (693)
Q Consensus 524 ~piv~iSA~~g~gv~~L~~~i~~~~ 548 (693)
.+++++||++|.|++++|+.+.+..
T Consensus 138 ~~~~e~SAk~~~~v~~l~~~l~~~l 162 (190)
T cd04144 138 CEFIEASAKTNVNVERAFYTLVRAL 162 (190)
T ss_pred CEEEEecCCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999997653
No 129
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.75 E-value=9.6e-18 Score=157.43 Aligned_cols=140 Identities=21% Similarity=0.193 Sum_probs=94.5
Q ss_pred EEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHHHH
Q 005504 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (693)
Q Consensus 373 ~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~~ 452 (693)
||+++|++|||||||+|+|.+.... +.. |. ...+ .+ .+|||||.... ..+. .....
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~----~~~-t~-----~~~~-~~---~~iDt~G~~~~--------~~~~--~~~~~ 57 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL----YKK-TQ-----AVEY-ND---GAIDTPGEYVE--------NRRL--YSALI 57 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc----ccc-ce-----eEEE-cC---eeecCchhhhh--------hHHH--HHHHH
Confidence 7999999999999999999987532 111 11 1122 12 68999997321 0011 22233
Q ss_pred HHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcEEEeccc
Q 005504 453 RAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAI 532 (693)
Q Consensus 453 ~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~piv~iSA~ 532 (693)
..++.+|++++|+|++++.+.++..+... .++|+++|+||+|+.+... ..+ ...+.+...+..+++++||+
T Consensus 58 ~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~--~~~----~~~~~~~~~~~~~~~~~Sa~ 128 (142)
T TIGR02528 58 VTAADADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAEADV--DIE----RAKELLETAGAEPIFEISSV 128 (142)
T ss_pred HHhhcCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCCccc--CHH----HHHHHHHHcCCCcEEEEecC
Confidence 46899999999999998877666555443 2469999999999864211 111 22222333334589999999
Q ss_pred cCCCHHHHHHHHH
Q 005504 533 AGQSVDKIIVAAE 545 (693)
Q Consensus 533 ~g~gv~~L~~~i~ 545 (693)
+|.|++++++.+.
T Consensus 129 ~~~gi~~l~~~l~ 141 (142)
T TIGR02528 129 DEQGLEALVDYLN 141 (142)
T ss_pred CCCCHHHHHHHHh
Confidence 9999999998873
No 130
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.75 E-value=1.1e-17 Score=186.41 Aligned_cols=158 Identities=29% Similarity=0.383 Sum_probs=122.6
Q ss_pred CCeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005504 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (693)
Q Consensus 163 ~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (693)
..+||++|.||||||||||+|+|.+ ..|++.||+|.+...+.....+..+.++|+||..+...-..+
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~-q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~D------------ 69 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGAN-QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSED------------ 69 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccC-ceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCch------------
Confidence 3569999999999999999999997 789999999999999999999999999999999875432221
Q ss_pred CCCCchhhHHHHHhcchHHHHHHHHHHHH--hcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCccchh
Q 005504 243 MEGIPLATREAAVARMPSMIERQATAAIE--ESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI 320 (693)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~i~~~~~~~i~--~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~~ 320 (693)
++.+++++. ..|+++-|+|+++ +...-.-.++.++ .+.|+++++|++|..+...
T Consensus 70 --------------------E~Var~~ll~~~~D~ivnVvDAtn-LeRnLyltlQLlE---~g~p~ilaLNm~D~A~~~G 125 (653)
T COG0370 70 --------------------EKVARDFLLEGKPDLIVNVVDATN-LERNLYLTLQLLE---LGIPMILALNMIDEAKKRG 125 (653)
T ss_pred --------------------HHHHHHHHhcCCCCEEEEEcccch-HHHHHHHHHHHHH---cCCCeEEEeccHhhHHhcC
Confidence 134445554 4799999999984 3332233344443 5899999999999875421
Q ss_pred h--hHHH-HHhcCCCCccccccCCCCHHHHHHHHHhhccc
Q 005504 321 M--QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (693)
Q Consensus 321 ~--~~~~-~~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l~~ 357 (693)
. +... -..+|.+++++||.+|.|+++|+++|.+..+.
T Consensus 126 i~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~~~~ 165 (653)
T COG0370 126 IRIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIELAES 165 (653)
T ss_pred CcccHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhccc
Confidence 1 1122 34579999999999999999999999875543
No 131
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.75 E-value=2.7e-17 Score=157.35 Aligned_cols=153 Identities=18% Similarity=0.183 Sum_probs=108.1
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCC--CeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
.||+++|++|||||||+|++++.+.. ....++++.+.....+.. ++ ..+.+|||||..++..
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~l~~~D~~G~~~~~~-------------- 64 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFD-NQYQATIGIDFLSKTMYL-EDKTVRLQLWDTAGQERFRS-------------- 64 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC-ccCCCceeeeEEEEEEEE-CCEEEEEEEEECCCcHHHHH--------------
Confidence 37999999999999999999987643 456677777776666654 34 3689999999755321
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHH-h--CCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCc
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ-E--GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~-~--~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~p 525 (693)
.....++.+|++++|+|++++.+.++. .++..+.. . +.|+++|+||+|+...... ..++ ....... .+.+
T Consensus 65 ~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~-~~~~----~~~~~~~-~~~~ 138 (161)
T cd01861 65 LIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQV-STEE----GEKKAKE-LNAM 138 (161)
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCcc-CHHH----HHHHHHH-hCCE
Confidence 123357899999999999876544443 35554433 3 4899999999999543221 1111 1111112 2478
Q ss_pred EEEeccccCCCHHHHHHHHHH
Q 005504 526 IVYSTAIAGQSVDKIIVAAEM 546 (693)
Q Consensus 526 iv~iSA~~g~gv~~L~~~i~~ 546 (693)
++++||++|.|+++++..+.+
T Consensus 139 ~~~~Sa~~~~~v~~l~~~i~~ 159 (161)
T cd01861 139 FIETSAKAGHNVKELFRKIAS 159 (161)
T ss_pred EEEEeCCCCCCHHHHHHHHHH
Confidence 999999999999999999865
No 132
>PRK12735 elongation factor Tu; Reviewed
Probab=99.75 E-value=1.8e-17 Score=182.14 Aligned_cols=163 Identities=18% Similarity=0.248 Sum_probs=122.0
Q ss_pred ccCCcEEEeecCCCCChhhHHHHHhcC------CCce---------ecCCCCcccceEEEEEeCCCCCeEEEEeCccccc
Q 005504 368 ENRIPAIAIVGRPNVGKSSILNALVGE------DRTI---------VSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRK 432 (693)
Q Consensus 368 ~~~~~~I~ivG~~n~GKSSLin~llg~------~~~~---------v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~ 432 (693)
+.+..+|+++|++|+|||||+++|++. .... .....|+|++.....+.. ++..+.|+||||+.+
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~-~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYET-ANRHYAHVDCPGHAD 87 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcC-CCcEEEEEECCCHHH
Confidence 345689999999999999999999962 1111 112458999987777764 677899999999865
Q ss_pred hhhhccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEE-EEEeccCCCCCcchhhHHHHH
Q 005504 433 RAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCL-IVVNKWDTIPNKNQQTATYYE 511 (693)
Q Consensus 433 ~~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~I-vv~NK~Dl~~~~~~~~~~~~~ 511 (693)
+ +..+...+..+|++++|+|+..+...++.+++..+...++|.+ +|+||||+.... ...+.+.
T Consensus 88 f--------------~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~--~~~~~~~ 151 (396)
T PRK12735 88 Y--------------VKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDE--ELLELVE 151 (396)
T ss_pred H--------------HHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchH--HHHHHHH
Confidence 3 3455677889999999999999989999899998888999966 579999997422 2334445
Q ss_pred HHHHHHHhcCC----CCcEEEeccccCC----------CHHHHHHHHHHH
Q 005504 512 QDVREKLRALD----WAPIVYSTAIAGQ----------SVDKIIVAAEMV 547 (693)
Q Consensus 512 ~~i~~~l~~~~----~~piv~iSA~~g~----------gv~~L~~~i~~~ 547 (693)
.++...+..++ ..|++++||++|. ++..|++++...
T Consensus 152 ~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~ 201 (396)
T PRK12735 152 MEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY 201 (396)
T ss_pred HHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence 56666666544 3789999999996 455555555543
No 133
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.75 E-value=2.1e-17 Score=161.85 Aligned_cols=157 Identities=25% Similarity=0.325 Sum_probs=109.0
Q ss_pred CCCCCCeEEEEcCCCCChhhHHHHhhcCc-eeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhh
Q 005504 159 PEHLLPRVAIVGRPNVGKSALFNRLVGGN-RAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAI 237 (693)
Q Consensus 159 ~~~~~~~V~ivG~~nvGKSsL~n~l~~~~-~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~ 237 (693)
++...++|+|+|++|+|||||+|+|++.. ...++..+++|.++..... + ..+.+|||||+......... .+
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~~~~~~~-~~---- 85 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N-DGFRLVDLPGYGYAKVSKEE-KE---- 85 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C-CcEEEEeCCCCccccCChhH-HH----
Confidence 34567899999999999999999999875 4567788889988776443 3 47999999998642211110 00
Q ss_pred hhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCcc
Q 005504 238 TTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPR 317 (693)
Q Consensus 238 ~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~ 317 (693)
.+...+ ..+.+....++++++|+|++.+++..+..+.+++.. .++|+++|+||+|+..
T Consensus 86 -------------------~~~~~~-~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~--~~~pviiv~nK~D~~~ 143 (179)
T TIGR03598 86 -------------------KWQKLI-EEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRE--RGIPVLIVLTKADKLK 143 (179)
T ss_pred -------------------HHHHHH-HHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHH--cCCCEEEEEECcccCC
Confidence 011111 112222345789999999999999988888888876 4789999999999875
Q ss_pred chhh-----hHHHHH-hcC--CCCccccccCCCCHH
Q 005504 318 KGIM-----QVSEFW-SLG--FSPLPISAISGTGTG 345 (693)
Q Consensus 318 ~~~~-----~~~~~~-~~g--~~~v~iSA~~g~gi~ 345 (693)
.... ...... ..+ ..++++||++|+|++
T Consensus 144 ~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 144 KSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred HHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence 3211 111122 222 368999999999974
No 134
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.75 E-value=9.7e-18 Score=158.03 Aligned_cols=157 Identities=33% Similarity=0.427 Sum_probs=107.4
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCC--CeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
+||+++|.+|+|||||+|++++.. ......+++|.+.....+.. ++ ..+.+|||||+.++.... .....
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~-------~~~~~ 72 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEE-DGKTYKFNLLDTAGQEDYRAIR-------RLYYR 72 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEE-CCEEEEEEEEECCCcccchHHH-------HHHHh
Confidence 689999999999999999999887 66777888888877766654 55 578999999976653221 11122
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcEEEe
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYS 529 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~piv~i 529 (693)
.+...+..+|++++|+|+.+........+...+. .+.|+++|+||+|+.... ........+......+++++
T Consensus 73 ~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~-------~~~~~~~~~~~~~~~~~~~~ 144 (161)
T TIGR00231 73 AVESSLRVFDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAK-------LKTHVAFLFAKLNGEPIIPL 144 (161)
T ss_pred hhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcch-------hhHHHHHHHhhccCCceEEe
Confidence 2222334445555555554433233333333332 388999999999996532 22334445555566789999
Q ss_pred ccccCCCHHHHHHHHH
Q 005504 530 TAIAGQSVDKIIVAAE 545 (693)
Q Consensus 530 SA~~g~gv~~L~~~i~ 545 (693)
||++|.|+.++++.|.
T Consensus 145 sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 145 SAETGKNIDSAFKIVE 160 (161)
T ss_pred ecCCCCCHHHHHHHhh
Confidence 9999999999998874
No 135
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.75 E-value=1.3e-17 Score=160.96 Aligned_cols=154 Identities=18% Similarity=0.159 Sum_probs=101.0
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeC-CCCCeEEEEeCccccchhhhccCCChhhHhHHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTG-PEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~-~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (693)
.||+++|.+|||||||++++++.... ....+ |+.......+.. .....+.+|||||+.++..+
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~-t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-------------- 65 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFR-ESYIP-TIEDTYRQVISCSKNICTLQITDTTGSHQFPAM-------------- 65 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-CCcCC-cchheEEEEEEECCEEEEEEEEECCCCCcchHH--------------
Confidence 58999999999999999999976532 11112 111111111221 12347889999998765322
Q ss_pred HHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHH------hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005504 451 AFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ------EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (693)
Q Consensus 451 ~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~------~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~ 523 (693)
...+++.+|++|+|+|.++..+.... .|+..+.+ .++|+++|+||+|+.+...... + ... .+.....
T Consensus 66 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~-~----~~~-~~~~~~~ 139 (165)
T cd04140 66 QRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSS-N----EGA-ACATEWN 139 (165)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecH-H----HHH-HHHHHhC
Confidence 12356789999999999887665443 35555544 3689999999999965322111 1 111 1111124
Q ss_pred CcEEEeccccCCCHHHHHHHHHHH
Q 005504 524 APIVYSTAIAGQSVDKIIVAAEMV 547 (693)
Q Consensus 524 ~piv~iSA~~g~gv~~L~~~i~~~ 547 (693)
++++++||++|.|++++|+.|.+.
T Consensus 140 ~~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 140 CAFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred CcEEEeecCCCCCHHHHHHHHHhc
Confidence 689999999999999999998753
No 136
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.75 E-value=4e-17 Score=156.81 Aligned_cols=155 Identities=14% Similarity=0.099 Sum_probs=102.2
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeC-CCCCeEEEEeCccccchhhhccCCChhhHhHHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTG-PEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~-~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (693)
+||+++|.+|||||||+|++++.... ....+..+.+.....+.. .....+.+|||||..++..+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-------------- 65 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFV-SKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEV-------------- 65 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHH--------------
Confidence 48999999999999999999987532 233333333332223322 12347899999998553221
Q ss_pred HHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHH--------hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcC
Q 005504 451 AFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ--------EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRAL 521 (693)
Q Consensus 451 ~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~--------~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~ 521 (693)
....++.+|++|+|+|.++..+.+.. .|+..+.. .+.|+++|+||+|+....... .+ .........
T Consensus 66 ~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~~----~~~~~~~~~ 140 (168)
T cd04119 66 RNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVS-ED----EGRLWAESK 140 (168)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccC-HH----HHHHHHHHc
Confidence 12356899999999999876443333 35555543 357999999999996422211 11 111122222
Q ss_pred CCCcEEEeccccCCCHHHHHHHHHHH
Q 005504 522 DWAPIVYSTAIAGQSVDKIIVAAEMV 547 (693)
Q Consensus 522 ~~~piv~iSA~~g~gv~~L~~~i~~~ 547 (693)
..+++++||++|.|++++++.+.+.
T Consensus 141 -~~~~~~~Sa~~~~gi~~l~~~l~~~ 165 (168)
T cd04119 141 -GFKYFETSACTGEGVNEMFQTLFSS 165 (168)
T ss_pred -CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999999999998754
No 137
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.75 E-value=9.7e-18 Score=168.93 Aligned_cols=168 Identities=25% Similarity=0.355 Sum_probs=129.2
Q ss_pred CCeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005504 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (693)
Q Consensus 163 ~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (693)
...||++|.||||||||.|.++|.+.+.++....+|+....+.+.-+..++.++||||+.....-...
T Consensus 72 ~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~------------ 139 (379)
T KOG1423|consen 72 SLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRH------------ 139 (379)
T ss_pred EEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhH------------
Confidence 45899999999999999999999999999999999999999999999999999999999863322111
Q ss_pred CCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCccchhh-
Q 005504 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM- 321 (693)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~~~- 321 (693)
.+...+.+..+.++.+||++++|+|++..-......+++.|++. ...|-++|+||+|...+...
T Consensus 140 --------------~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y-s~ips~lvmnkid~~k~k~~L 204 (379)
T KOG1423|consen 140 --------------HLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY-SKIPSILVMNKIDKLKQKRLL 204 (379)
T ss_pred --------------HHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH-hcCCceeeccchhcchhhhHH
Confidence 01111234567899999999999999865445556778888775 68899999999997643110
Q ss_pred ------------h--HHH----HHh----------cC---C-CCccccccCCCCHHHHHHHHHhhccc
Q 005504 322 ------------Q--VSE----FWS----------LG---F-SPLPISAISGTGTGELLDLVCSELKK 357 (693)
Q Consensus 322 ------------~--~~~----~~~----------~g---~-~~v~iSA~~g~gi~~Ll~~i~~~l~~ 357 (693)
. ..+ |-. .| | .+|++||.+|.|+++|.+.|....+.
T Consensus 205 l~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~ 272 (379)
T KOG1423|consen 205 LNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP 272 (379)
T ss_pred hhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence 0 001 110 12 2 37999999999999999999987764
No 138
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.75 E-value=2.2e-17 Score=163.91 Aligned_cols=143 Identities=20% Similarity=0.242 Sum_probs=104.2
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeec---------------CCCCceeeeEEEEEEecCeeEEEEecCCcccccCCc
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVV---------------DEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQ 228 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~---------------~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~ 228 (693)
.+|+++|++|||||||+++|++....... ...|+|.......+.+++..+.+|||||+..+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~---- 78 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADF---- 78 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHH----
Confidence 57999999999999999999963211111 12566777766677888899999999998641
Q ss_pred hhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEE
Q 005504 229 PNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIIL 308 (693)
Q Consensus 229 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~iv 308 (693)
......+++.+|++++|+|+.++.......++..+.. .+.|+++
T Consensus 79 ----------------------------------~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~--~~~p~ii 122 (194)
T cd01891 79 ----------------------------------GGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE--LGLKPIV 122 (194)
T ss_pred ----------------------------------HHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH--cCCCEEE
Confidence 2344567899999999999998876666666666554 4789999
Q ss_pred EecccCCccchhh----hHHHHH--------hcCCCCccccccCCCCHHH
Q 005504 309 AVNKCESPRKGIM----QVSEFW--------SLGFSPLPISAISGTGTGE 346 (693)
Q Consensus 309 v~NK~D~~~~~~~----~~~~~~--------~~g~~~v~iSA~~g~gi~~ 346 (693)
|+||+|+...... ...+++ ..+++++++||.+|.|+.+
T Consensus 123 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~ 172 (194)
T cd01891 123 VINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLN 172 (194)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCEEEeehhccccccc
Confidence 9999998643221 112222 1255789999999977643
No 139
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.75 E-value=8.7e-18 Score=157.56 Aligned_cols=165 Identities=17% Similarity=0.179 Sum_probs=116.3
Q ss_pred cCCcEEEeecCCCCChhhHHHHHhcCCCce-ecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhH
Q 005504 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTI-VSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALS 447 (693)
Q Consensus 369 ~~~~~I~ivG~~n~GKSSLin~llg~~~~~-v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~ 447 (693)
....+|.++|.+|||||||+|++...+... ...+.|...-..+..+. ..-..+++|||+|+.||+++..
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd-~~~vtlQiWDTAGQERFqsLg~--------- 76 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVD-DRSVTLQIWDTAGQERFQSLGV--------- 76 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEc-CeEEEEEEEecccHHHhhhccc---------
Confidence 456899999999999999999998654321 22222222222222222 1234789999999999977642
Q ss_pred HHHHHHHHhcCCeEEEEecccccCCHHHHH-HHHHHHHh-------CCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHh
Q 005504 448 VNRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE-------GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLR 519 (693)
Q Consensus 448 ~~~~~~~i~~aDvvllViDa~~~~~~~d~~-~~~~l~~~-------~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~ 519 (693)
..+++||+|++|+|....-+.+.+. |-+.+... .-|+||++||+|+...+.... -.+.....+.
T Consensus 77 -----aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~V---S~~~Aq~WC~ 148 (210)
T KOG0394|consen 77 -----AFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQV---SEKKAQTWCK 148 (210)
T ss_pred -----ceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCcccee---eHHHHHHHHH
Confidence 2679999999999998876666654 44444332 458999999999855321111 1234556777
Q ss_pred cCCCCcEEEeccccCCCHHHHHHHHHHHHHHh
Q 005504 520 ALDWAPIVYSTAIAGQSVDKIIVAAEMVDKER 551 (693)
Q Consensus 520 ~~~~~piv~iSA~~g~gv~~L~~~i~~~~~~~ 551 (693)
..+.+|++++|||.+.||++.|+.+.+.....
T Consensus 149 s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~~ 180 (210)
T KOG0394|consen 149 SKGNIPYFETSAKEATNVDEAFEEIARRALAN 180 (210)
T ss_pred hcCCceeEEecccccccHHHHHHHHHHHHHhc
Confidence 88899999999999999999999998764443
No 140
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.75 E-value=5.6e-18 Score=170.12 Aligned_cols=144 Identities=25% Similarity=0.295 Sum_probs=106.6
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeec------------------------------CCCCceeeeEEEEEEecCeeEE
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVV------------------------------DEPGVTRDRMYGRSFWGEHEFM 214 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~------------------------------~~~~~T~~~~~~~~~~~~~~~~ 214 (693)
+|+|+||+|+|||||+++|++...+++. ...|+|++.....+.+++.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 5899999999999999999865433331 1268899999988899999999
Q ss_pred EEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHH
Q 005504 215 LVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIA 294 (693)
Q Consensus 215 lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~ 294 (693)
+|||||+..+ ...+..++..+|++|+|+|++.+...++....
T Consensus 81 liDTpG~~~~--------------------------------------~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~ 122 (208)
T cd04166 81 IADTPGHEQY--------------------------------------TRNMVTGASTADLAILLVDARKGVLEQTRRHS 122 (208)
T ss_pred EEECCcHHHH--------------------------------------HHHHHHhhhhCCEEEEEEECCCCccHhHHHHH
Confidence 9999998531 12344578899999999999999888777777
Q ss_pred HHHHhhcCCCcEEEEecccCCccchhh-------hHHH-HHhcCC---CCccccccCCCCHHHH
Q 005504 295 DWLRKNYMDKFIILAVNKCESPRKGIM-------QVSE-FWSLGF---SPLPISAISGTGTGEL 347 (693)
Q Consensus 295 ~~L~~~~~~~p~ivv~NK~D~~~~~~~-------~~~~-~~~~g~---~~v~iSA~~g~gi~~L 347 (693)
.++... ...++|+|+||+|+...... ...+ +..+++ +++++||.+|.|+.+.
T Consensus 123 ~~~~~~-~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 123 YILSLL-GIRHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHc-CCCcEEEEEEchhcccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 777652 12457889999998642111 1111 123454 4799999999998754
No 141
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.75 E-value=1.6e-17 Score=159.02 Aligned_cols=149 Identities=21% Similarity=0.220 Sum_probs=98.7
Q ss_pred EEEeecCCCCChhhHHHHHhcCCC--ceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHH
Q 005504 373 AIAIVGRPNVGKSSILNALVGEDR--TIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (693)
Q Consensus 373 ~I~ivG~~n~GKSSLin~llg~~~--~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (693)
+|+++|.+|||||||+++|.+... ..+.+..|.+.. .+. ..+..+.+|||||..++...
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~----~~~-~~~~~~~l~Dt~G~~~~~~~-------------- 61 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE----SFE-KGNLSFTAFDMSGQGKYRGL-------------- 61 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE----EEE-ECCEEEEEEECCCCHhhHHH--------------
Confidence 589999999999999999998632 233444444432 222 25678999999998664322
Q ss_pred HHHHHhcCCeEEEEecccccCCHHH-HHHHHHHH------HhCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCC-
Q 005504 451 AFRAIRRSDVVALVIEAMACITEQD-CRIAERIE------QEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD- 522 (693)
Q Consensus 451 ~~~~i~~aDvvllViDa~~~~~~~d-~~~~~~l~------~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~- 522 (693)
...+++.+|++++|+|++++.+... ..++..+. ..++|+++|+||+|+...... .++...+. +....
T Consensus 62 ~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~---~~~~~~l~--~~~~~~ 136 (162)
T cd04157 62 WEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTA---VKITQLLG--LENIKD 136 (162)
T ss_pred HHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCH---HHHHHHhC--CccccC
Confidence 1235789999999999987644322 12333332 247999999999999653221 11211111 11111
Q ss_pred -CCcEEEeccccCCCHHHHHHHHH
Q 005504 523 -WAPIVYSTAIAGQSVDKIIVAAE 545 (693)
Q Consensus 523 -~~piv~iSA~~g~gv~~L~~~i~ 545 (693)
..+++++||++|.|+++++++|.
T Consensus 137 ~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 137 KPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred ceEEEEEeeCCCCCchHHHHHHHh
Confidence 23589999999999999999875
No 142
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.75 E-value=2.4e-17 Score=187.85 Aligned_cols=159 Identities=19% Similarity=0.282 Sum_probs=119.4
Q ss_pred cCCcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHH
Q 005504 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (693)
Q Consensus 369 ~~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (693)
.+.++|+++|++|+|||||+++|.+.. ......+|+|.+.....+...++..+.||||||+.++...
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~-v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~------------ 151 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTK-VAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSM------------ 151 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCC-cccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhH------------
Confidence 456899999999999999999999764 3345567888886655555433448999999999776332
Q ss_pred HHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHHHHHHHH--Hh--cCCCC
Q 005504 449 NRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREK--LR--ALDWA 524 (693)
Q Consensus 449 ~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~--l~--~~~~~ 524 (693)
..+.+..+|++++|+|+.++...+....+..+...++|+|+++||+|+..... +.+.+.+.+. .. .....
T Consensus 152 --r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~----e~v~~~L~~~g~~~~~~~~~~ 225 (587)
T TIGR00487 152 --RARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANP----DRVKQELSEYGLVPEDWGGDT 225 (587)
T ss_pred --HHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCH----HHHHHHHHHhhhhHHhcCCCc
Confidence 12457889999999999999999999888888888999999999999964321 1122222211 10 11235
Q ss_pred cEEEeccccCCCHHHHHHHHHH
Q 005504 525 PIVYSTAIAGQSVDKIIVAAEM 546 (693)
Q Consensus 525 piv~iSA~~g~gv~~L~~~i~~ 546 (693)
+++++||++|.|+++|++++..
T Consensus 226 ~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 226 IFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred eEEEEECCCCCChHHHHHhhhh
Confidence 7999999999999999999864
No 143
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=1.7e-17 Score=180.33 Aligned_cols=154 Identities=22% Similarity=0.295 Sum_probs=124.9
Q ss_pred CCCeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEec---CeeEEEEecCCcccccCCchhhhhhhhhh
Q 005504 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG---EHEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (693)
Q Consensus 162 ~~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~---~~~~~lvDTpG~~~~~~~~~~~~~~~~~~ 238 (693)
+.|.|+++||.+.|||||+++|.+.+.+ .....|+|.+.-.+.+.++ ...++++||||+.-+..
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va-~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~------------ 70 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVA-AGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTA------------ 70 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccc-cccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHH------------
Confidence 4689999999999999999999998743 4667799999999999884 47899999999975432
Q ss_pred hcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCccc
Q 005504 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRK 318 (693)
Q Consensus 239 ~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~ 318 (693)
.-.+..+-+|++++|||+.+|+.+|+.+.++.++. .+.|+++++||+|+.+.
T Consensus 71 --------------------------mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~--a~vP~iVAiNKiDk~~~ 122 (509)
T COG0532 71 --------------------------MRARGASVTDIAILVVAADDGVMPQTIEAINHAKA--AGVPIVVAINKIDKPEA 122 (509)
T ss_pred --------------------------HHhcCCccccEEEEEEEccCCcchhHHHHHHHHHH--CCCCEEEEEecccCCCC
Confidence 12244577999999999999999999999999988 69999999999999864
Q ss_pred hhhh-HHHHHhcCC---------CCccccccCCCCHHHHHHHHHhhcc
Q 005504 319 GIMQ-VSEFWSLGF---------SPLPISAISGTGTGELLDLVCSELK 356 (693)
Q Consensus 319 ~~~~-~~~~~~~g~---------~~v~iSA~~g~gi~~Ll~~i~~~l~ 356 (693)
.... ..+....|+ .++|+||++|.|+++|++.|.-.-+
T Consensus 123 np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~ae 170 (509)
T COG0532 123 NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLAE 170 (509)
T ss_pred CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHHH
Confidence 3221 222333332 5799999999999999998865433
No 144
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.75 E-value=2.5e-17 Score=158.54 Aligned_cols=153 Identities=18% Similarity=0.191 Sum_probs=104.7
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCC--CeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
.+|+++|.+|||||||+|++++.... ....+.++.+.....+.. ++ ..+.+|||||+.++..+
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~------------- 68 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFN-LDSKSTIGVEFATRSIQI-DGKTIKAQIWDTAGQERYRAI------------- 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceEEEEEEEEE-CCEEEEEEEEeCCChHHHHHH-------------
Confidence 69999999999999999999977533 233344444433333433 33 36899999998654221
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHH---hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCc
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~---~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~p 525 (693)
....++.++++|+|+|+++..+.++. .|+..+.+ .++|+++|+||+|+....... .+ +....... ...+
T Consensus 69 -~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~-~~----~~~~~~~~-~~~~ 141 (165)
T cd01868 69 -TSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP-TE----EAKAFAEK-NGLS 141 (165)
T ss_pred -HHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCC-HH----HHHHHHHH-cCCE
Confidence 12356889999999999876555543 35555544 258999999999986532211 11 11222222 2478
Q ss_pred EEEeccccCCCHHHHHHHHHH
Q 005504 526 IVYSTAIAGQSVDKIIVAAEM 546 (693)
Q Consensus 526 iv~iSA~~g~gv~~L~~~i~~ 546 (693)
++++||++|.|++++++.+.+
T Consensus 142 ~~~~Sa~~~~~v~~l~~~l~~ 162 (165)
T cd01868 142 FIETSALDGTNVEEAFKQLLT 162 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 999999999999999999864
No 145
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.75 E-value=4e-17 Score=159.52 Aligned_cols=156 Identities=15% Similarity=0.136 Sum_probs=104.5
Q ss_pred CcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCC-----------CCCeEEEEeCccccchhhhccC
Q 005504 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-----------EGQKFRLIDTAGIRKRAAIASS 439 (693)
Q Consensus 371 ~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~-----------~g~~i~liDTpG~~~~~~~~~~ 439 (693)
.+||+++|.+|||||||++++.+... .....+..+.+.....+... ....+.+|||||+.++...
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--- 79 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKF-NPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSL--- 79 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHH---
Confidence 37999999999999999999987542 22222322223222222211 1247899999998654322
Q ss_pred CChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHHh----CCcEEEEEeccCCCCCcchhhHHHHHHHH
Q 005504 440 GSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE----GKGCLIVVNKWDTIPNKNQQTATYYEQDV 514 (693)
Q Consensus 440 ~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~~----~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i 514 (693)
....++.+|++++|+|+++..+.++. .|+..+... +.|+++|+||+|+.+..... .+ +.
T Consensus 80 -----------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~-~~----~~ 143 (180)
T cd04127 80 -----------TTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVS-EE----QA 143 (180)
T ss_pred -----------HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccC-HH----HH
Confidence 23367899999999999886655554 366666543 67999999999996533221 11 12
Q ss_pred HHHHhcCCCCcEEEeccccCCCHHHHHHHHHHH
Q 005504 515 REKLRALDWAPIVYSTAIAGQSVDKIIVAAEMV 547 (693)
Q Consensus 515 ~~~l~~~~~~piv~iSA~~g~gv~~L~~~i~~~ 547 (693)
.+..... +.+++++||++|.|++++|+.+.+.
T Consensus 144 ~~~~~~~-~~~~~e~Sak~~~~v~~l~~~l~~~ 175 (180)
T cd04127 144 KALADKY-GIPYFETSAATGTNVEKAVERLLDL 175 (180)
T ss_pred HHHHHHc-CCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 2222222 4689999999999999999998764
No 146
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.75 E-value=1e-17 Score=169.81 Aligned_cols=161 Identities=23% Similarity=0.275 Sum_probs=124.4
Q ss_pred CCCCeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCee-EEEEecCCcccccCCchhhhhhhhhhh
Q 005504 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHE-FMLVDTGGVLNVSKSQPNIMEDLAITT 239 (693)
Q Consensus 161 ~~~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~-~~lvDTpG~~~~~~~~~~~~~~~~~~~ 239 (693)
..++.|++||.||+|||||+|+|...+ ..|.++++||..++.+.+.+++.. +.+-|.||+......++.+-
T Consensus 194 KsiadvGLVG~PNAGKSTLL~als~AK-pkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG------- 265 (366)
T KOG1489|consen 194 KSIADVGLVGFPNAGKSTLLNALSRAK-PKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLG------- 265 (366)
T ss_pred eeecccceecCCCCcHHHHHHHhhccC-CcccccceeeeccccceeeccccceeEeccCccccccccccCccc-------
Confidence 455789999999999999999999887 689999999999999999888865 99999999998665555422
Q ss_pred cccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCC--CCHHH-H-HH---HHHHHhhcCCCcEEEEecc
Q 005504 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG--LTAAD-E-EI---ADWLRKNYMDKFIILAVNK 312 (693)
Q Consensus 240 ~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~--~~~~d-~-~i---~~~L~~~~~~~p~ivv~NK 312 (693)
..+++.+++|++++||+|.+.+ .++++ . .+ ++...+...++|.++|+||
T Consensus 266 ------------------------~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNK 321 (366)
T KOG1489|consen 266 ------------------------YKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANK 321 (366)
T ss_pred ------------------------HHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEec
Confidence 4677999999999999999876 23332 1 12 2233344478999999999
Q ss_pred cCCccchhhhHHHHH-hcC-CCCccccccCCCCHHHHHHHHHh
Q 005504 313 CESPRKGIMQVSEFW-SLG-FSPLPISAISGTGTGELLDLVCS 353 (693)
Q Consensus 313 ~D~~~~~~~~~~~~~-~~g-~~~v~iSA~~g~gi~~Ll~~i~~ 353 (693)
+|..+.+.....++. ++. ..++++||++|+|+.+|++.|..
T Consensus 322 iD~~eae~~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 322 IDLPEAEKNLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred cCchhHHHHHHHHHHHHcCCCcEEEeeeccccchHHHHHHHhh
Confidence 999754332223332 233 24899999999999999988754
No 147
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.75 E-value=3e-17 Score=157.34 Aligned_cols=155 Identities=16% Similarity=0.156 Sum_probs=104.6
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCce-ecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTI-VSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~-v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (693)
.||+++|++|||||||+|++++.+... ..+..|.+.......+.. .+..+.+|||||..++.. .
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~-~~~~~~i~D~~G~~~~~~--------------~ 66 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDD-TTVKFEIWDTAGQERYRS--------------L 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC-EEEEEEEEeCCchHHHHH--------------H
Confidence 589999999999999999999876433 333344334333334332 345789999999755321 1
Q ss_pred HHHHHhcCCeEEEEecccccCCHHH-HHHHHHHHHh---CCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcE
Q 005504 451 AFRAIRRSDVVALVIEAMACITEQD-CRIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPI 526 (693)
Q Consensus 451 ~~~~i~~aDvvllViDa~~~~~~~d-~~~~~~l~~~---~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~pi 526 (693)
....++.+|++++|+|+++..+... ..|+..+... +.|+++|+||+|+....... .+ ......... +.++
T Consensus 67 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~-~~----~~~~~~~~~-~~~~ 140 (163)
T cd01860 67 APMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVS-TE----EAQEYADEN-GLLF 140 (163)
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCC-HH----HHHHHHHHc-CCEE
Confidence 1235688999999999987543333 3455555554 47899999999986432211 11 122222222 3789
Q ss_pred EEeccccCCCHHHHHHHHHHH
Q 005504 527 VYSTAIAGQSVDKIIVAAEMV 547 (693)
Q Consensus 527 v~iSA~~g~gv~~L~~~i~~~ 547 (693)
+++||++|.|++++++.+.+.
T Consensus 141 ~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd01860 141 FETSAKTGENVNELFTEIAKK 161 (163)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999998754
No 148
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.75 E-value=2.6e-17 Score=160.67 Aligned_cols=159 Identities=16% Similarity=0.151 Sum_probs=106.6
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCC--CeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
+||+++|.+|||||||++++.+... ...+..|..+.....+.. ++ ..+.+|||||..++..++
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f--~~~~~pt~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~------------ 66 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMI-GGEPYTLGLFDTAGQEDYDRLR------------ 66 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeEEEEEE-CCEEEEEEEEECCCccchhhhh------------
Confidence 5899999999999999999997542 233444444433333433 34 467899999997653321
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHH--HHHHHHHHh--CCcEEEEEeccCCCCCcchhh-H-----HHH-HHHHHHHH
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNKNQQT-A-----TYY-EQDVREKL 518 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~--~~~~~l~~~--~~p~Ivv~NK~Dl~~~~~~~~-~-----~~~-~~~i~~~l 518 (693)
..+++.+|++|+|+|.++..+.++. .|+..+... +.|+|+|+||+|+........ . ..+ .++..+..
T Consensus 67 --~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a 144 (175)
T cd01874 67 --PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLA 144 (175)
T ss_pred --hhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHH
Confidence 1256899999999999887666655 366666543 689999999999854311000 0 000 01111222
Q ss_pred hcCCCCcEEEeccccCCCHHHHHHHHHHH
Q 005504 519 RALDWAPIVYSTAIAGQSVDKIIVAAEMV 547 (693)
Q Consensus 519 ~~~~~~piv~iSA~~g~gv~~L~~~i~~~ 547 (693)
...+..+++++||++|.|++++|+.+.++
T Consensus 145 ~~~~~~~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 145 RDLKAVKYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred HHhCCcEEEEecCCCCCCHHHHHHHHHHH
Confidence 23334689999999999999999988764
No 149
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.75 E-value=3.8e-17 Score=179.73 Aligned_cols=150 Identities=21% Similarity=0.291 Sum_probs=115.4
Q ss_pred cCCcEEEeecCCCCChhhHHHHHhcC------CCcee---------cCCCCcccceEEEEEeCCCCCeEEEEeCccccch
Q 005504 369 NRIPAIAIVGRPNVGKSSILNALVGE------DRTIV---------SPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKR 433 (693)
Q Consensus 369 ~~~~~I~ivG~~n~GKSSLin~llg~------~~~~v---------~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~ 433 (693)
++.++|+++|++++|||||+++|++. ..... ....|+|++.....+.. ++..+.||||||+.++
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~-~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHADY 88 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcC-CCEEEEEEECCchHHH
Confidence 45589999999999999999999842 11111 12369999988777764 6678999999999764
Q ss_pred hhhccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEE-EEEeccCCCCCcchhhHHHHHH
Q 005504 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCL-IVVNKWDTIPNKNQQTATYYEQ 512 (693)
Q Consensus 434 ~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~I-vv~NK~Dl~~~~~~~~~~~~~~ 512 (693)
...+...+..+|++++|+|+.++...++.+++..+...++|.+ +|+||||+.... ...+.+.+
T Consensus 89 --------------~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~--~~~~~~~~ 152 (394)
T TIGR00485 89 --------------VKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDE--ELLELVEM 152 (394)
T ss_pred --------------HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHH--HHHHHHHH
Confidence 2345667789999999999999999999999999999999976 689999997532 22333445
Q ss_pred HHHHHHhcCCC----CcEEEeccccCC
Q 005504 513 DVREKLRALDW----APIVYSTAIAGQ 535 (693)
Q Consensus 513 ~i~~~l~~~~~----~piv~iSA~~g~ 535 (693)
++++.+...++ +|++++||++|.
T Consensus 153 ~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 153 EVRELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHHHHHHhcCCCccCccEEECcccccc
Confidence 66666665543 799999999985
No 150
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.75 E-value=1.9e-17 Score=159.68 Aligned_cols=155 Identities=17% Similarity=0.133 Sum_probs=101.9
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCC-CCCeEEEEeCccccchhhhccCCChhhHhHHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (693)
.||+++|.+|||||||+|++++..... ...+.++.+.....+... ....+.+|||||+.++...
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~-------------- 66 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTS-AFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTI-------------- 66 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHH--------------
Confidence 589999999999999999999865321 112222222111122211 2247899999998654221
Q ss_pred HHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHHh---CCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcE
Q 005504 451 AFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPI 526 (693)
Q Consensus 451 ~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~~---~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~pi 526 (693)
....++.+|++++|+|.++..+.+.. .|+..+... +.|+++|+||+|+.+..... .++ ...+.+ .. +.++
T Consensus 67 ~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~-~~~-~~~~~~---~~-~~~~ 140 (165)
T cd01865 67 TTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVS-SER-GRQLAD---QL-GFEF 140 (165)
T ss_pred HHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccC-HHH-HHHHHH---Hc-CCEE
Confidence 23457899999999999876444333 366666543 57999999999996543221 111 112222 22 3589
Q ss_pred EEeccccCCCHHHHHHHHHHH
Q 005504 527 VYSTAIAGQSVDKIIVAAEMV 547 (693)
Q Consensus 527 v~iSA~~g~gv~~L~~~i~~~ 547 (693)
+++||++|.|++++++.+.+.
T Consensus 141 ~~~Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 141 FEASAKENINVKQVFERLVDI 161 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999998764
No 151
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.75 E-value=2.3e-17 Score=166.62 Aligned_cols=157 Identities=16% Similarity=0.103 Sum_probs=106.4
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCC--CCeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE--GQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~--g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
+||+++|.+|||||||+|+|++.. ......+.++.+.....+...+ ...+.+|||||+..+..+
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~-~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l------------- 66 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEG-FGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKM------------- 66 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCC-CCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHH-------------
Confidence 489999999999999999999764 2223334444454444444422 347899999998654222
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHHh------CCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCC
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE------GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD 522 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~~------~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~ 522 (693)
....++.+|++|+|+|+++..+.++. .|+..+.+. +.|+++|+||+|+....... .+ ... .+....
T Consensus 67 -~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~-~~----~~~-~~~~~~ 139 (215)
T cd04109 67 -LDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVK-DD----KHA-RFAQAN 139 (215)
T ss_pred -HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccC-HH----HHH-HHHHHc
Confidence 12347899999999999887555554 355666543 35799999999996433211 11 111 122222
Q ss_pred CCcEEEeccccCCCHHHHHHHHHHHHH
Q 005504 523 WAPIVYSTAIAGQSVDKIIVAAEMVDK 549 (693)
Q Consensus 523 ~~piv~iSA~~g~gv~~L~~~i~~~~~ 549 (693)
+.+++++||++|.|++++|+.+.+...
T Consensus 140 ~~~~~~iSAktg~gv~~lf~~l~~~l~ 166 (215)
T cd04109 140 GMESCLVSAKTGDRVNLLFQQLAAELL 166 (215)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999986543
No 152
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.75 E-value=3.5e-17 Score=170.33 Aligned_cols=113 Identities=20% Similarity=0.202 Sum_probs=93.5
Q ss_pred EEEeecCCCCChhhHHHHHhcCCCc-----eec------------CCCCcccceEEEEEeCCCCCeEEEEeCccccchhh
Q 005504 373 AIAIVGRPNVGKSSILNALVGEDRT-----IVS------------PISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAA 435 (693)
Q Consensus 373 ~I~ivG~~n~GKSSLin~llg~~~~-----~v~------------~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~ 435 (693)
+|+++|++|+|||||+|+|+..... .+. ...|+|++.....+.+ ++..+.+|||||+.++.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~df~- 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW-KDHRINIIDTPGHVDFT- 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE-CCEEEEEEECCCcHHHH-
Confidence 5899999999999999999742211 111 2348888888888875 78899999999986642
Q ss_pred hccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCC
Q 005504 436 IASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIP 500 (693)
Q Consensus 436 ~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~ 500 (693)
..+..+++.+|++++|+|+..+...++..+++.+...++|+++++||+|+..
T Consensus 79 -------------~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 130 (270)
T cd01886 79 -------------IEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTG 130 (270)
T ss_pred -------------HHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 2456688999999999999999999999999999999999999999999864
No 153
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.75 E-value=2.9e-17 Score=157.35 Aligned_cols=154 Identities=15% Similarity=0.116 Sum_probs=102.3
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCc-eecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRT-IVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~-~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (693)
.||+++|.+|||||||+++|++.... ...+..|.........+. .....+.+|||||+.++.. .
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~D~~G~~~~~~--------------~ 65 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVG-GKRVKLQIWDTAGQERFRS--------------V 65 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEEC-CEEEEEEEEECcchHHHHH--------------h
Confidence 48999999999999999999976432 122222222222222222 1224789999999865422 1
Q ss_pred HHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHH---hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcE
Q 005504 451 AFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPI 526 (693)
Q Consensus 451 ~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~---~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~pi 526 (693)
....++.+|++++|+|++++.+.+.. .|+..+.. .+.|+++|+||+|+....... .+ +........ +.++
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~-~~----~~~~~~~~~-~~~~ 139 (161)
T cd04113 66 TRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVT-FL----EASRFAQEN-GLLF 139 (161)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCC-HH----HHHHHHHHc-CCEE
Confidence 23457899999999999987665553 35554433 478999999999996532211 11 222222222 3789
Q ss_pred EEeccccCCCHHHHHHHHHH
Q 005504 527 VYSTAIAGQSVDKIIVAAEM 546 (693)
Q Consensus 527 v~iSA~~g~gv~~L~~~i~~ 546 (693)
+++||++|.|++++++.+.+
T Consensus 140 ~~~Sa~~~~~i~~~~~~~~~ 159 (161)
T cd04113 140 LETSALTGENVEEAFLKCAR 159 (161)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998864
No 154
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.75 E-value=2e-17 Score=158.28 Aligned_cols=152 Identities=18% Similarity=0.129 Sum_probs=97.7
Q ss_pred EEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHHHH
Q 005504 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (693)
Q Consensus 373 ~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~~ 452 (693)
||+++|.+|||||||++++....... ..+.+..+. ..+.. .+..+.+|||||+.++... ..
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~--~~~t~~~~~--~~~~~-~~~~~~i~Dt~G~~~~~~~--------------~~ 61 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT--TIPTIGFNV--ETVTY-KNLKFQVWDLGGQTSIRPY--------------WR 61 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC--cCCccCcCe--EEEEE-CCEEEEEEECCCCHHHHHH--------------HH
Confidence 58999999999999999997654332 222211221 23333 4678999999998654221 23
Q ss_pred HHHhcCCeEEEEecccccCCHH--HHHHHHHHHH---hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcEE
Q 005504 453 RAIRRSDVVALVIEAMACITEQ--DCRIAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIV 527 (693)
Q Consensus 453 ~~i~~aDvvllViDa~~~~~~~--d~~~~~~l~~---~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~piv 527 (693)
.+++.+|++|+|+|+++..+.. ...+...+.. .++|+++|+||+|+..... ..++...+..........+++
T Consensus 62 ~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~---~~~i~~~~~~~~~~~~~~~~~ 138 (158)
T cd04151 62 CYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALS---EAEISEKLGLSELKDRTWSIF 138 (158)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCC---HHHHHHHhCccccCCCcEEEE
Confidence 4678999999999998753222 2223333332 3789999999999964321 112222221100011124799
Q ss_pred EeccccCCCHHHHHHHHHH
Q 005504 528 YSTAIAGQSVDKIIVAAEM 546 (693)
Q Consensus 528 ~iSA~~g~gv~~L~~~i~~ 546 (693)
++||++|.|++++++.+.+
T Consensus 139 ~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 139 KTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred EeeccCCCCHHHHHHHHhc
Confidence 9999999999999998854
No 155
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.75 E-value=1.8e-17 Score=158.52 Aligned_cols=153 Identities=14% Similarity=0.140 Sum_probs=99.3
Q ss_pred EEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHHHH
Q 005504 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (693)
Q Consensus 373 ~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~~ 452 (693)
+|+++|.+|||||||+|++.+.......+..|.+. ..+....+..+.+|||||+.++.. ...
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~----~~~~~~~~~~l~i~D~~G~~~~~~--------------~~~ 62 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNV----EMLQLEKHLSLTVWDVGGQEKMRT--------------VWK 62 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcce----EEEEeCCceEEEEEECCCCHhHHH--------------HHH
Confidence 58999999999999999999876543333333222 222222456899999999865322 122
Q ss_pred HHHhcCCeEEEEecccccCCHHHH-HHHHHHHH----hCCcEEEEEeccCCCCCcchhhHHHHHHHHH-HHHhcCCCCcE
Q 005504 453 RAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVR-EKLRALDWAPI 526 (693)
Q Consensus 453 ~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~----~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~-~~l~~~~~~pi 526 (693)
.+++.+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+..... .+++...+. ..+......++
T Consensus 63 ~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~i~~~~~~~~~~~~~~~~~ 139 (160)
T cd04156 63 CYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALT---AEEITRRFKLKKYCSDRDWYV 139 (160)
T ss_pred HHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcC---HHHHHHHcCCcccCCCCcEEE
Confidence 357889999999999876432222 23333322 4789999999999854321 122222211 11111123479
Q ss_pred EEeccccCCCHHHHHHHHHH
Q 005504 527 VYSTAIAGQSVDKIIVAAEM 546 (693)
Q Consensus 527 v~iSA~~g~gv~~L~~~i~~ 546 (693)
+++||++|.|++++++.|.+
T Consensus 140 ~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 140 QPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred EecccccCCChHHHHHHHhc
Confidence 99999999999999998853
No 156
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.75 E-value=2.2e-17 Score=159.69 Aligned_cols=154 Identities=13% Similarity=0.086 Sum_probs=102.6
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCC-ceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDR-TIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~-~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (693)
+||+++|.+|||||||+++++.... ....+..|........... .....+.+|||||+.++..+.
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~------------- 66 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTN-RGKIRFNVWDTAGQEKFGGLR------------- 66 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEEC-CEEEEEEEEECCCChhhcccc-------------
Confidence 4899999999999999999985431 1122222222222222211 123478999999987653321
Q ss_pred HHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHHh--CCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcEE
Q 005504 451 AFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIV 527 (693)
Q Consensus 451 ~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~~--~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~piv 527 (693)
...+..+|++|+|+|++++.+.+.. .|+..+... ++|+++|+||+|+..... . .+ . ..+......+++
T Consensus 67 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~-~-~~-----~-~~~~~~~~~~~~ 137 (166)
T cd00877 67 -DGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKV-K-AK-----Q-ITFHRKKNLQYY 137 (166)
T ss_pred -HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccC-C-HH-----H-HHHHHHcCCEEE
Confidence 1246789999999999987665554 355665543 699999999999963221 1 11 1 112222357899
Q ss_pred EeccccCCCHHHHHHHHHHHH
Q 005504 528 YSTAIAGQSVDKIIVAAEMVD 548 (693)
Q Consensus 528 ~iSA~~g~gv~~L~~~i~~~~ 548 (693)
++||++|.|++++|+.+.+..
T Consensus 138 e~Sa~~~~~v~~~f~~l~~~~ 158 (166)
T cd00877 138 EISAKSNYNFEKPFLWLARKL 158 (166)
T ss_pred EEeCCCCCChHHHHHHHHHHH
Confidence 999999999999999997543
No 157
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.74 E-value=5.8e-17 Score=156.70 Aligned_cols=158 Identities=17% Similarity=0.188 Sum_probs=103.7
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCC--CeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
+||+++|.+|||||||+|++++.... ....+..+.+.....+.. .+ ..+.+|||||+..+..+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~------------- 65 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVTV-DDKLVTLQIWDTAGQERFQSL------------- 65 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCccceEEEEEEEEE-CCEEEEEEEEeCCChHHHHhH-------------
Confidence 48999999999999999999976422 222222233333333332 33 35679999998654221
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHH-------hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcC
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ-------EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRAL 521 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~-------~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~ 521 (693)
....++.+|++|+|+|+.++.+.+.. .|...+.. .++|+++|+||+|+..+... .. +.+...+...
T Consensus 66 -~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~-~~----~~~~~~~~~~ 139 (172)
T cd01862 66 -GVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQV-ST----KKAQQWCQSN 139 (172)
T ss_pred -HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccccccc-CH----HHHHHHHHHc
Confidence 23467899999999999876543333 23333322 17899999999999742221 11 1222333344
Q ss_pred CCCcEEEeccccCCCHHHHHHHHHHHHHH
Q 005504 522 DWAPIVYSTAIAGQSVDKIIVAAEMVDKE 550 (693)
Q Consensus 522 ~~~piv~iSA~~g~gv~~L~~~i~~~~~~ 550 (693)
+..+++++||++|.|++++++.+.+...+
T Consensus 140 ~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~ 168 (172)
T cd01862 140 GNIPYFETSAKEAINVEQAFETIARKALE 168 (172)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45789999999999999999999876443
No 158
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.74 E-value=6e-17 Score=155.58 Aligned_cols=156 Identities=17% Similarity=0.185 Sum_probs=103.0
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcc-cceEEEEEeCC--CCCeEEEEeCccccchhhhccCCChhhHhHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTT-RDAIDTEFTGP--EGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT-~d~~~~~~~~~--~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (693)
.||+++|.+|||||||++++.+........+..|+ .+.....+... ....+.+|||||+.++..
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~------------- 67 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSD------------- 67 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHH-------------
Confidence 48999999999999999999854222223333233 33322223221 235899999999755321
Q ss_pred HHHHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHHh--CCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCc
Q 005504 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (693)
Q Consensus 449 ~~~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~~--~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~p 525 (693)
....+++.+|++++|+|.++..+..+. .|+..+... ++|+++|+||+|+........ . ..+ .+....+.+
T Consensus 68 -~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~-~-~~~----~~~~~~~~~ 140 (164)
T cd04101 68 -MVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTD-A-QAQ----AFAQANQLK 140 (164)
T ss_pred -HHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCH-H-HHH----HHHHHcCCe
Confidence 123467899999999999876544433 466665544 689999999999965432211 1 111 112222468
Q ss_pred EEEeccccCCCHHHHHHHHHHH
Q 005504 526 IVYSTAIAGQSVDKIIVAAEMV 547 (693)
Q Consensus 526 iv~iSA~~g~gv~~L~~~i~~~ 547 (693)
++++||++|.|++++++.+.+.
T Consensus 141 ~~~~Sa~~~~gi~~l~~~l~~~ 162 (164)
T cd04101 141 FFKTSALRGVGYEEPFESLARA 162 (164)
T ss_pred EEEEeCCCCCChHHHHHHHHHH
Confidence 9999999999999999998764
No 159
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.74 E-value=1.2e-17 Score=169.34 Aligned_cols=159 Identities=22% Similarity=0.240 Sum_probs=122.3
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (693)
..|++||.||+|||||+|+|...+. .+.+|+.||..+......+.+...+.+-|.||+.+-. ...+......
T Consensus 197 advGLVG~PNAGKSTLL~als~AKp-kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GA-------h~nkGlG~~F 268 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKP-KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGA-------HMNKGLGYKF 268 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCC-cccccceeeeccccceeeccccceeEeccCccccccc-------cccCcccHHH
Confidence 4789999999999999999998865 7999999999999888877555679999999998753 3445556788
Q ss_pred HHHHhcCCeEEEEeccccc---CCHHHHH-HHHHHHHh-----CCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCC
Q 005504 452 FRAIRRSDVVALVIEAMAC---ITEQDCR-IAERIEQE-----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD 522 (693)
Q Consensus 452 ~~~i~~aDvvllViDa~~~---~~~~d~~-~~~~l~~~-----~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~ 522 (693)
++++++|++++||+|.+.+ --.++.+ +..++..+ .+|.++|+||+|+.+.+. .....+.+.+.
T Consensus 269 LrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~-----~~l~~L~~~lq--- 340 (366)
T KOG1489|consen 269 LRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEK-----NLLSSLAKRLQ--- 340 (366)
T ss_pred HHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHH-----HHHHHHHHHcC---
Confidence 9999999999999999876 2233333 33444332 689999999999964321 12233444433
Q ss_pred CCcEEEeccccCCCHHHHHHHHHH
Q 005504 523 WAPIVYSTAIAGQSVDKIIVAAEM 546 (693)
Q Consensus 523 ~~piv~iSA~~g~gv~~L~~~i~~ 546 (693)
...++++||++|+|+.+|+..+.+
T Consensus 341 ~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 341 NPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred CCcEEEeeeccccchHHHHHHHhh
Confidence 346999999999999999988764
No 160
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.74 E-value=1.6e-17 Score=161.31 Aligned_cols=143 Identities=23% Similarity=0.315 Sum_probs=100.4
Q ss_pred CeEEEEEeCCCCCCHHHHHHHHH--HHhhcCCCcEEEEecccCCccchhh-hHHHHHhcCCCC-----------------
Q 005504 274 CVIIFLVDGQAGLTAADEEIADW--LRKNYMDKFIILAVNKCESPRKGIM-QVSEFWSLGFSP----------------- 333 (693)
Q Consensus 274 diil~VvD~~~~~~~~d~~i~~~--L~~~~~~~p~ivv~NK~D~~~~~~~-~~~~~~~~g~~~----------------- 333 (693)
|++++|+|++.++...+..+.+. +.. .++|+|+|+||+|+...... ...+++......
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~--~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAG--GNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQSQKKNLGQK 78 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhcc--CCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEecccccccchhhc
Confidence 78999999999888878888887 433 47899999999999764332 122222222211
Q ss_pred ---------ccccccCCCCHHHHHHHHHhhcccccCccchhhhccCCcEEEeecCCCCChhhHHHHHhcCCCceecCCCC
Q 005504 334 ---------LPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISG 404 (693)
Q Consensus 334 ---------v~iSA~~g~gi~~Ll~~i~~~l~~~~~~~~~~~~~~~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~g 404 (693)
..+|+..+.|.+.|+..+.+..... ......+++++|.||+|||||+|+|++.....+++.||
T Consensus 79 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~--------~~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg 150 (172)
T cd04178 79 SVKVEAASADLLRSSVCFGADCLLKLLKNYSRNK--------DIKTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPG 150 (172)
T ss_pred ccccchhhhhhhhhccccCHHHHHHHHHHHhhcc--------ccccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCC
Confidence 1234444555555555553322211 11334799999999999999999999998889999999
Q ss_pred cccceEEEEEeCCCCCeEEEEeCccc
Q 005504 405 TTRDAIDTEFTGPEGQKFRLIDTAGI 430 (693)
Q Consensus 405 tT~d~~~~~~~~~~g~~i~liDTpG~ 430 (693)
+|+......+ +..+.|+||||+
T Consensus 151 ~T~~~~~~~~----~~~~~l~DtPGi 172 (172)
T cd04178 151 VTKSMQEVHL----DKKVKLLDSPGI 172 (172)
T ss_pred eEcceEEEEe----CCCEEEEECcCC
Confidence 9998665543 246899999995
No 161
>PRK00049 elongation factor Tu; Reviewed
Probab=99.74 E-value=2.9e-17 Score=180.41 Aligned_cols=161 Identities=19% Similarity=0.256 Sum_probs=122.4
Q ss_pred cCCcEEEeecCCCCChhhHHHHHhcCC------Ccee---------cCCCCcccceEEEEEeCCCCCeEEEEeCccccch
Q 005504 369 NRIPAIAIVGRPNVGKSSILNALVGED------RTIV---------SPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKR 433 (693)
Q Consensus 369 ~~~~~I~ivG~~n~GKSSLin~llg~~------~~~v---------~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~ 433 (693)
...++|+++|++|+|||||+++|++.. .... .-..|+|++.....+.. ++..+.++||||+.++
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYET-EKRHYAHVDCPGHADY 88 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcC-CCeEEEEEECCCHHHH
Confidence 455899999999999999999999631 1111 11569999988777764 6778999999998653
Q ss_pred hhhccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEE-EEEeccCCCCCcchhhHHHHHH
Q 005504 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCL-IVVNKWDTIPNKNQQTATYYEQ 512 (693)
Q Consensus 434 ~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~I-vv~NK~Dl~~~~~~~~~~~~~~ 512 (693)
...+...+..+|++++|+|+..+...++..++.++...++|.+ +++||||+.... ...+.+..
T Consensus 89 --------------~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~--~~~~~~~~ 152 (396)
T PRK00049 89 --------------VKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDE--ELLELVEM 152 (396)
T ss_pred --------------HHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchH--HHHHHHHH
Confidence 2345567789999999999999999999999999999999976 589999997422 23344555
Q ss_pred HHHHHHhcCC----CCcEEEeccccCCC----------HHHHHHHHHH
Q 005504 513 DVREKLRALD----WAPIVYSTAIAGQS----------VDKIIVAAEM 546 (693)
Q Consensus 513 ~i~~~l~~~~----~~piv~iSA~~g~g----------v~~L~~~i~~ 546 (693)
++...+..++ .+|++++||++|.+ +..|+++|..
T Consensus 153 ~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~ 200 (396)
T PRK00049 153 EVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDS 200 (396)
T ss_pred HHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHh
Confidence 6777776654 37999999999863 4555555554
No 162
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.74 E-value=3.4e-17 Score=161.18 Aligned_cols=161 Identities=17% Similarity=0.147 Sum_probs=105.3
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCC--CeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
++|+++|.+|||||||++++++.... ..+..|+.+.....+...++ ..+.+|||||+.++..+.
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~--~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~------------ 66 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFP--EEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLR------------ 66 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCC--CCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHH------------
Confidence 48999999999999999999976422 22333333333333333223 368999999986642221
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHHH--HHHHHHH--hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCc
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDCR--IAERIEQ--EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~~--~~~~l~~--~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~p 525 (693)
...++.+|++++|+|+++..+.++.. |+..+.. .++|+|+|+||+|+......... ....+..+.....+..+
T Consensus 67 --~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-v~~~~~~~~~~~~~~~~ 143 (187)
T cd04132 67 --PLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRK-VTPAQAESVAKKQGAFA 143 (187)
T ss_pred --HHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCC-cCHHHHHHHHHHcCCcE
Confidence 12468999999999999876666542 5555443 36899999999998653210000 00112222222333348
Q ss_pred EEEeccccCCCHHHHHHHHHHHHH
Q 005504 526 IVYSTAIAGQSVDKIIVAAEMVDK 549 (693)
Q Consensus 526 iv~iSA~~g~gv~~L~~~i~~~~~ 549 (693)
++++||++|.|++++|..+.+...
T Consensus 144 ~~e~Sa~~~~~v~~~f~~l~~~~~ 167 (187)
T cd04132 144 YLECSAKTMENVEEVFDTAIEEAL 167 (187)
T ss_pred EEEccCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999976643
No 163
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.74 E-value=8.8e-17 Score=159.30 Aligned_cols=165 Identities=23% Similarity=0.302 Sum_probs=116.5
Q ss_pred CCCeEEEEcCCCCChhhHHHHhhcCc-eeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005504 162 LLPRVAIVGRPNVGKSALFNRLVGGN-RAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (693)
Q Consensus 162 ~~~~V~ivG~~nvGKSsL~n~l~~~~-~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~ 240 (693)
..++|+++|++|+|||||+|+|++.+ .+.++..+|+|+...... + +..+.+|||||+........ ..+
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~-~~~l~l~DtpG~~~~~~~~~-~~~------- 91 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--V-NDKLRLVDLPGYGYAKVSKE-EKE------- 91 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--c-CCeEEEeCCCCCCCcCCCch-HHH-------
Confidence 56789999999999999999999875 566778888888776543 2 47899999999864221111 000
Q ss_pred ccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCccchh
Q 005504 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI 320 (693)
Q Consensus 241 ~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~~ 320 (693)
.+... ..........++++++|+|+..+.+..+..+.+++.. .+.|+++++||+|+.....
T Consensus 92 ----------------~~~~~-~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~--~~~~~iiv~nK~Dl~~~~~ 152 (196)
T PRK00454 92 ----------------KWQKL-IEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKE--YGIPVLIVLTKADKLKKGE 152 (196)
T ss_pred ----------------HHHHH-HHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHH--cCCcEEEEEECcccCCHHH
Confidence 01111 1112223344578999999988888877777888866 4789999999999875432
Q ss_pred hh-----HHHHHhc-CCCCccccccCCCCHHHHHHHHHhhcc
Q 005504 321 MQ-----VSEFWSL-GFSPLPISAISGTGTGELLDLVCSELK 356 (693)
Q Consensus 321 ~~-----~~~~~~~-g~~~v~iSA~~g~gi~~Ll~~i~~~l~ 356 (693)
.. ...+... ...++++||.+|.|++++++.|.+.+.
T Consensus 153 ~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 153 RKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 11 1122222 457899999999999999999988775
No 164
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.74 E-value=5e-17 Score=166.20 Aligned_cols=161 Identities=19% Similarity=0.225 Sum_probs=118.0
Q ss_pred EEEeecCCCCChhhHHHHHhcCCCceec-----------------CCCCcccceEEEEEeCCCCCeEEEEeCccccchhh
Q 005504 373 AIAIVGRPNVGKSSILNALVGEDRTIVS-----------------PISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAA 435 (693)
Q Consensus 373 ~I~ivG~~n~GKSSLin~llg~~~~~v~-----------------~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~ 435 (693)
+|+++|++|+|||||+++|+.....+.. ...|+|.......+.. ++.++.+|||||+.++.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~-~~~~i~liDTPG~~~f~- 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQW-EDTKVNLIDTPGHMDFI- 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEE-CCEEEEEEeCCCccchH-
Confidence 5899999999999999999864332211 1224555555556654 67899999999997652
Q ss_pred hccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhH--------
Q 005504 436 IASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTA-------- 507 (693)
Q Consensus 436 ~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~-------- 507 (693)
..+..+++.+|++++|+|+.++...+...+++.+...++|+++++||+|+.........
T Consensus 79 -------------~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~ 145 (237)
T cd04168 79 -------------AEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIKEKLS 145 (237)
T ss_pred -------------HHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCCHHHHHHHHHHHHC
Confidence 23456789999999999999999888888999999999999999999998643221111
Q ss_pred ------------------------------------------------HHHHHHHHHHHhcCCCCcEEEeccccCCCHHH
Q 005504 508 ------------------------------------------------TYYEQDVREKLRALDWAPIVYSTAIAGQSVDK 539 (693)
Q Consensus 508 ------------------------------------------------~~~~~~i~~~l~~~~~~piv~iSA~~g~gv~~ 539 (693)
+++...+++.+......|+++.||.++.|+..
T Consensus 146 ~~~~~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ 225 (237)
T cd04168 146 SDIVPMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEE 225 (237)
T ss_pred CCeEEEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHH
Confidence 11122222222333457999999999999999
Q ss_pred HHHHHHHHH
Q 005504 540 IIVAAEMVD 548 (693)
Q Consensus 540 L~~~i~~~~ 548 (693)
|++.+.+.+
T Consensus 226 ll~~~~~~~ 234 (237)
T cd04168 226 LLEGITKLF 234 (237)
T ss_pred HHHHHHHhc
Confidence 999987653
No 165
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=1.7e-17 Score=157.36 Aligned_cols=158 Identities=17% Similarity=0.194 Sum_probs=111.1
Q ss_pred CcEEEeecCCCCChhhHHHHHhcCCCcee-cCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 371 IPAIAIVGRPNVGKSSILNALVGEDRTIV-SPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 371 ~~~I~ivG~~n~GKSSLin~llg~~~~~v-~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
.+||+++|..|||||||+-++...+.... .++.|...-....... ....++.+|||+|++++..+..
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~-~~~ikfeIWDTAGQERy~slap----------- 72 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVD-DNTIKFEIWDTAGQERYHSLAP----------- 72 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeC-CcEEEEEEEEcCCccccccccc-----------
Confidence 47999999999999999999986543221 2333333322222222 1235788999999998755432
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHHhCCc---EEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCc
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQEGKG---CLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~~~~p---~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~p 525 (693)
.++|+|+++|+|+|+++..+.+.. .|+..+++..-| +.+|+||+||........ + +. ..+....+..
T Consensus 73 ---MYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~-~----ea-~~yAe~~gll 143 (200)
T KOG0092|consen 73 ---MYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEF-E----EA-QAYAESQGLL 143 (200)
T ss_pred ---ceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccH-H----HH-HHHHHhcCCE
Confidence 167999999999999987776665 488888886445 556999999987443221 1 11 2233334689
Q ss_pred EEEeccccCCCHHHHHHHHHHHHH
Q 005504 526 IVYSTAIAGQSVDKIIVAAEMVDK 549 (693)
Q Consensus 526 iv~iSA~~g~gv~~L~~~i~~~~~ 549 (693)
++++|||+|.||++||..|.+...
T Consensus 144 ~~ETSAKTg~Nv~~if~~Ia~~lp 167 (200)
T KOG0092|consen 144 FFETSAKTGENVNEIFQAIAEKLP 167 (200)
T ss_pred EEEEecccccCHHHHHHHHHHhcc
Confidence 999999999999999999986543
No 166
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.74 E-value=3.5e-17 Score=157.10 Aligned_cols=145 Identities=22% Similarity=0.242 Sum_probs=96.9
Q ss_pred EEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHHHH
Q 005504 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (693)
Q Consensus 373 ~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~~ 452 (693)
+|+++|++|||||||+|+|.|.... .+......+. +. .+|||||+..... + ......
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--------~~~~~~v~~~---~~--~~iDtpG~~~~~~--------~--~~~~~~ 59 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--------ARKTQAVEFN---DK--GDIDTPGEYFSHP--------R--WYHALI 59 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--------CccceEEEEC---CC--CcccCCccccCCH--------H--HHHHHH
Confidence 7999999999999999999986421 1122222222 21 2699999743211 1 123334
Q ss_pred HHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCC-CcEEEecc
Q 005504 453 RAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW-APIVYSTA 531 (693)
Q Consensus 453 ~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~-~piv~iSA 531 (693)
.+++.+|++++|+|++++.+.....+... ..++|+++++||+|+... .. + .+.+.+...+. .|++++||
T Consensus 60 ~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~~-~~---~----~~~~~~~~~~~~~p~~~~Sa 129 (158)
T PRK15467 60 TTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPDA-DV---A----ATRKLLLETGFEEPIFELNS 129 (158)
T ss_pred HHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCcc-cH---H----HHHHHHHHcCCCCCEEEEEC
Confidence 56789999999999988755443333321 247899999999998542 11 1 12223333332 59999999
Q ss_pred ccCCCHHHHHHHHHHHHHH
Q 005504 532 IAGQSVDKIIVAAEMVDKE 550 (693)
Q Consensus 532 ~~g~gv~~L~~~i~~~~~~ 550 (693)
++|.|+++|++.+.+...+
T Consensus 130 ~~g~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 130 HDPQSVQQLVDYLASLTKQ 148 (158)
T ss_pred CCccCHHHHHHHHHHhchh
Confidence 9999999999999877543
No 167
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=4.6e-17 Score=157.33 Aligned_cols=160 Identities=17% Similarity=0.148 Sum_probs=119.6
Q ss_pred cCCcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCC--eEEEEeCccccchhhhccCCChhhHh
Q 005504 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEAL 446 (693)
Q Consensus 369 ~~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~--~i~liDTpG~~~~~~~~~~~~~~e~~ 446 (693)
...++|.++|.+|||||+++-++... .+..+......+|.....+.+ +|. .+++|||+|+.++..+
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~-~f~~~~~sTiGIDFk~kti~l-~g~~i~lQiWDtaGQerf~ti---------- 77 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDD-SFNTSFISTIGIDFKIKTIEL-DGKKIKLQIWDTAGQERFRTI---------- 77 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhc-cCcCCccceEEEEEEEEEEEe-CCeEEEEEEEEcccchhHHHH----------
Confidence 35689999999999999999999854 343444444445555555555 443 7899999999987654
Q ss_pred HHHHHHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHHh---CCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCC
Q 005504 447 SVNRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD 522 (693)
Q Consensus 447 ~~~~~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~~---~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~ 522 (693)
+-.+++.|+.+++|+|.++.-+.++. .|++.+.+. +.|.++|+||+|+...+.. ..+-.+.++.-.
T Consensus 78 ----~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V------~~e~ge~lA~e~ 147 (207)
T KOG0078|consen 78 ----TTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQV------SKERGEALAREY 147 (207)
T ss_pred ----HHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccc------cHHHHHHHHHHh
Confidence 34478999999999999987766664 477777764 7899999999999663322 222334444444
Q ss_pred CCcEEEeccccCCCHHHHHHHHHHHHHH
Q 005504 523 WAPIVYSTAIAGQSVDKIIVAAEMVDKE 550 (693)
Q Consensus 523 ~~piv~iSA~~g~gv~~L~~~i~~~~~~ 550 (693)
+++++++|||+|.||++.|-.+.+....
T Consensus 148 G~~F~EtSAk~~~NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 148 GIKFFETSAKTNFNIEEAFLSLARDILQ 175 (207)
T ss_pred CCeEEEccccCCCCHHHHHHHHHHHHHh
Confidence 7999999999999999999988776543
No 168
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.74 E-value=5.2e-17 Score=160.50 Aligned_cols=157 Identities=15% Similarity=0.138 Sum_probs=108.0
Q ss_pred CCcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCC--CeEEEEeCccccchhhhccCCChhhHhH
Q 005504 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALS 447 (693)
Q Consensus 370 ~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~e~~~ 447 (693)
...||+++|..|||||||+.++.+.... ....+..+.+.....+.. ++ ..+.+|||||+.++..+.
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~-~~~~~t~~~~~~~~~i~~-~~~~~~l~iwDt~G~~~~~~l~---------- 72 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTE-SPYGYNMGIDYKTTTILL-DGRRVKLQLWDTSGQGRFCTIF---------- 72 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHH----------
Confidence 3479999999999999999999964321 111122233333333333 34 478899999987653321
Q ss_pred HHHHHHHHhcCCeEEEEecccccCCHHHHH-HHHHHHHh--CCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005504 448 VNRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (693)
Q Consensus 448 ~~~~~~~i~~aDvvllViDa~~~~~~~d~~-~~~~l~~~--~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~ 524 (693)
..+++.+|++|+|+|.++..+.+... |+..+... +.|+|||+||.|+....... . ++.+...... +.
T Consensus 73 ----~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~-~----~~~~~~a~~~-~~ 142 (189)
T cd04121 73 ----RSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVA-T----EQAQAYAERN-GM 142 (189)
T ss_pred ----HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCC-H----HHHHHHHHHc-CC
Confidence 23568999999999999877666654 77777553 78999999999996432211 1 1222222222 47
Q ss_pred cEEEeccccCCCHHHHHHHHHHHH
Q 005504 525 PIVYSTAIAGQSVDKIIVAAEMVD 548 (693)
Q Consensus 525 piv~iSA~~g~gv~~L~~~i~~~~ 548 (693)
+++++||++|.||+++|+.+.+..
T Consensus 143 ~~~e~SAk~g~~V~~~F~~l~~~i 166 (189)
T cd04121 143 TFFEVSPLCNFNITESFTELARIV 166 (189)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHH
Confidence 899999999999999999997643
No 169
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.74 E-value=2.6e-17 Score=149.41 Aligned_cols=116 Identities=38% Similarity=0.609 Sum_probs=95.9
Q ss_pred EEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHHHH
Q 005504 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (693)
Q Consensus 373 ~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~~ 452 (693)
+|+++|.+|+|||||+|+|++.+...++..+++|+......+.+ ++..+.++||||+....... .......+++
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~-~~~~~~~vDtpG~~~~~~~~-----~~~~~~~~~~ 74 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEY-NNKKFILVDTPGINDGESQD-----NDGKEIRKFL 74 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEE-TTEEEEEEESSSCSSSSHHH-----HHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeee-ceeeEEEEeCCCCcccchhh-----HHHHHHHHHH
Confidence 68999999999999999999987889999999999997766665 77888999999986632211 1111345677
Q ss_pred HHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEec
Q 005504 453 RAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNK 495 (693)
Q Consensus 453 ~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK 495 (693)
+.+..+|++++|+|+.++....+..+++++. .++|+++|+||
T Consensus 75 ~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 75 EQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp HHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred HHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 7889999999999998866677888888886 89999999998
No 170
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.74 E-value=1.1e-17 Score=181.36 Aligned_cols=211 Identities=21% Similarity=0.261 Sum_probs=143.3
Q ss_pred HHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCccchh--hhHH-----HHHhcCC---
Q 005504 262 IERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI--MQVS-----EFWSLGF--- 331 (693)
Q Consensus 262 i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~~--~~~~-----~~~~~g~--- 331 (693)
+..........+++|++|+|+.+.......++.+++ .++|+++|+||+|+..... .... .+...|+
T Consensus 53 f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~----~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~ 128 (360)
T TIGR03597 53 FLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPV 128 (360)
T ss_pred HHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh----CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcC
Confidence 344445556788999999999876655555555554 3679999999999864321 1111 1233565
Q ss_pred CCccccccCCCCHHHHHHHHHhhcccccCccchhhhccCCcEEEeecCCCCChhhHHHHHhcCC-----CceecCCCCcc
Q 005504 332 SPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGED-----RTIVSPISGTT 406 (693)
Q Consensus 332 ~~v~iSA~~g~gi~~Ll~~i~~~l~~~~~~~~~~~~~~~~~~I~ivG~~n~GKSSLin~llg~~-----~~~v~~~~gtT 406 (693)
.++.+||++|.|+++|++.|.+... ..+++++|.+|||||||+|+|++.. ...++..||||
T Consensus 129 ~i~~vSAk~g~gv~eL~~~l~~~~~--------------~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT 194 (360)
T TIGR03597 129 DIILVSAKKGNGIDELLDKIKKARN--------------KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTT 194 (360)
T ss_pred cEEEecCCCCCCHHHHHHHHHHHhC--------------CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeE
Confidence 4789999999999999999865421 1589999999999999999999853 35789999999
Q ss_pred cceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHHHHHHH---hcCCeEEEEecccccCCHHHHHHHHHHH
Q 005504 407 RDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAI---RRSDVVALVIEAMACITEQDCRIAERIE 483 (693)
Q Consensus 407 ~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i---~~aDvvllViDa~~~~~~~d~~~~~~l~ 483 (693)
++.....+ +..+.++||||+.....+. +.+. .+.++.+ .......+.+|..+.+.-..+..+..+.
T Consensus 195 ~~~~~~~~----~~~~~l~DtPG~~~~~~~~---~~l~----~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~ 263 (360)
T TIGR03597 195 LDLIEIPL----DDGHSLYDTPGIINSHQMA---HYLD----KKDLKYITPKKEIKPKTYQLNPNQTLFLGGLARFDYLK 263 (360)
T ss_pred eeEEEEEe----CCCCEEEECCCCCChhHhh---hhcC----HHHHhhcCCCCccCceEEEeCCCCEEEEceEEEEEEec
Confidence 99776554 2346899999997643221 1111 1222222 3457788888877655544544444444
Q ss_pred HhCCcEEEEEeccCCCCC
Q 005504 484 QEGKGCLIVVNKWDTIPN 501 (693)
Q Consensus 484 ~~~~p~Ivv~NK~Dl~~~ 501 (693)
..+..+.+.++|.+.+..
T Consensus 264 ~~~~~~~~~~~~~~~~h~ 281 (360)
T TIGR03597 264 GEKTSFTFYVSNELNIHR 281 (360)
T ss_pred CCceEEEEEccCCceeEe
Confidence 445667777787776543
No 171
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.74 E-value=6.6e-17 Score=154.94 Aligned_cols=155 Identities=17% Similarity=0.118 Sum_probs=105.0
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCC--CeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
+||+++|++|||||||++++++... .....+.++.+.....+.. ++ ..+.+|||||..++..
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~-------------- 64 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKF-SEQYKSTIGVDFKTKTIEV-DGKRVKLQIWDTAGQERFRS-------------- 64 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCChHHHHH--------------
Confidence 4899999999999999999997653 2223333333333333433 33 4788999999765421
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHH---hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCc
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~---~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~p 525 (693)
.....++.+|++++|+|++++.+.+.. .|+..+.. .++|+++|+||+|+....... .+ ...+..... +.+
T Consensus 65 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~-~~----~~~~~~~~~-~~~ 138 (164)
T smart00175 65 ITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVS-RE----EAEAFAEEH-GLP 138 (164)
T ss_pred HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCC-HH----HHHHHHHHc-CCe
Confidence 123356889999999999886555543 35555544 368999999999986532211 11 111222222 468
Q ss_pred EEEeccccCCCHHHHHHHHHHHH
Q 005504 526 IVYSTAIAGQSVDKIIVAAEMVD 548 (693)
Q Consensus 526 iv~iSA~~g~gv~~L~~~i~~~~ 548 (693)
++++||++|.|++++++.+.+..
T Consensus 139 ~~e~Sa~~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 139 FFETSAKTNTNVEEAFEELAREI 161 (164)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999987653
No 172
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.74 E-value=4.8e-17 Score=157.39 Aligned_cols=155 Identities=17% Similarity=0.135 Sum_probs=103.1
Q ss_pred CcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeC-CCCCeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTG-PEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 371 ~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~-~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
..+|+++|.+|||||||++++++... .....+..+.+.....+.. .....+.+|||||+.++..+
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~------------- 70 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKF-DTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSL------------- 70 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCC-CcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHh-------------
Confidence 47999999999999999999997542 2222333333333333332 12236789999998664322
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHH-------hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcC
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ-------EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRAL 521 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~-------~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~ 521 (693)
....++.+|++++|+|.++..+.+.. .|...+.. .+.|+++|+||+|+... .. .. +++.+.+...
T Consensus 71 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~-~~----~~~~~~~~~~ 143 (170)
T cd04116 71 -RTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPER-QV-ST----EEAQAWCREN 143 (170)
T ss_pred -HHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccccc-cc-CH----HHHHHHHHHC
Confidence 12357899999999999876544443 24444432 35799999999998632 11 11 1233333334
Q ss_pred CCCcEEEeccccCCCHHHHHHHHHH
Q 005504 522 DWAPIVYSTAIAGQSVDKIIVAAEM 546 (693)
Q Consensus 522 ~~~piv~iSA~~g~gv~~L~~~i~~ 546 (693)
...+++++||++|.|+.++|+.+.+
T Consensus 144 ~~~~~~e~Sa~~~~~v~~~~~~~~~ 168 (170)
T cd04116 144 GDYPYFETSAKDATNVAAAFEEAVR 168 (170)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHh
Confidence 4468999999999999999998864
No 173
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.74 E-value=2.6e-17 Score=162.75 Aligned_cols=160 Identities=16% Similarity=0.169 Sum_probs=105.2
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCC--CeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
.||+++|.+|||||||++++++..... .+..|..+.....+.. ++ ..+.+|||||+.++..+.
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~--~~~~t~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~~~~l~------------ 65 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQ--VYEPTVFENYVHDIFV-DGLHIELSLWDTAGQEEFDRLR------------ 65 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC--ccCCcceeeeEEEEEE-CCEEEEEEEEECCCChhccccc------------
Confidence 379999999999999999999764321 2222222222222222 23 478999999987653332
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHH--HHHHHHHHh--CCcEEEEEeccCCCCCcchhhH-H-----H-HHHHHHHHH
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNKNQQTA-T-----Y-YEQDVREKL 518 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~--~~~~~l~~~--~~p~Ivv~NK~Dl~~~~~~~~~-~-----~-~~~~i~~~l 518 (693)
..+++.+|++++|+|.++..+.+.. .|+..+... +.|+++|+||+|+......... . . ..++..+..
T Consensus 66 --~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 143 (189)
T cd04134 66 --SLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVA 143 (189)
T ss_pred --cccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHH
Confidence 1146889999999999887666554 367777653 7899999999999653221100 0 0 011122222
Q ss_pred hcCCCCcEEEeccccCCCHHHHHHHHHHHH
Q 005504 519 RALDWAPIVYSTAIAGQSVDKIIVAAEMVD 548 (693)
Q Consensus 519 ~~~~~~piv~iSA~~g~gv~~L~~~i~~~~ 548 (693)
...+.++++++||++|.|++++|..+.+..
T Consensus 144 ~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~ 173 (189)
T cd04134 144 KRINALRYLECSAKLNRGVNEAFTEAARVA 173 (189)
T ss_pred HHcCCCEEEEccCCcCCCHHHHHHHHHHHH
Confidence 333446899999999999999999887653
No 174
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.74 E-value=2.8e-17 Score=157.02 Aligned_cols=152 Identities=16% Similarity=0.126 Sum_probs=102.5
Q ss_pred EEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHHHH
Q 005504 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (693)
Q Consensus 373 ~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~~ 452 (693)
||+++|.+|||||||++++++.......+..|.+.+. +.. ++..+.+|||||+.++... ..
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~----~~~-~~~~~~i~D~~G~~~~~~~--------------~~ 61 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVET----VEY-KNVSFTVWDVGGQDKIRPL--------------WK 61 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEE----EEE-CCEEEEEEECCCChhhHHH--------------HH
Confidence 6899999999999999999987633333444444332 332 4668999999998654221 22
Q ss_pred HHHhcCCeEEEEecccccCCHHH-HHHHHHHHH----hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcEE
Q 005504 453 RAIRRSDVVALVIEAMACITEQD-CRIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIV 527 (693)
Q Consensus 453 ~~i~~aDvvllViDa~~~~~~~d-~~~~~~l~~----~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~piv 527 (693)
..+..+|++++|+|++++.+... ..++..+.. .+.|+++|+||+|+..... .+++.+.+..........+++
T Consensus 62 ~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 138 (158)
T cd00878 62 HYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALS---VSELIEKLGLEKILGRRWHIQ 138 (158)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccC---HHHHHHhhChhhccCCcEEEE
Confidence 35688999999999987632222 223333322 4789999999999975431 222333332221222346899
Q ss_pred EeccccCCCHHHHHHHHHH
Q 005504 528 YSTAIAGQSVDKIIVAAEM 546 (693)
Q Consensus 528 ~iSA~~g~gv~~L~~~i~~ 546 (693)
++||++|.|++++++.|..
T Consensus 139 ~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 139 PCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred EeeCCCCCCHHHHHHHHhh
Confidence 9999999999999998753
No 175
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.74 E-value=5e-17 Score=158.45 Aligned_cols=152 Identities=18% Similarity=0.119 Sum_probs=99.7
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (693)
.+|+++|.+|+|||||++++++.......+..|.+. ..+.. ++..+.+|||||+.++... .
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~----~~~~~-~~~~~~l~D~~G~~~~~~~--------------~ 76 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNV----EEIVY-KNIRFLMWDIGGQESLRSS--------------W 76 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCCCcCCccccce----EEEEE-CCeEEEEEECCCCHHHHHH--------------H
Confidence 699999999999999999998765433333333322 23333 5678999999998654221 2
Q ss_pred HHHHhcCCeEEEEecccccCCHHHH-HHHHHH-HH---hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcE
Q 005504 452 FRAIRRSDVVALVIEAMACITEQDC-RIAERI-EQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPI 526 (693)
Q Consensus 452 ~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l-~~---~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~pi 526 (693)
..+++.+|++++|+|++++.+.... ..+..+ .. .++|+++|+||+|+..... .+++.+.+..........++
T Consensus 77 ~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~---~~~i~~~l~~~~~~~~~~~~ 153 (174)
T cd04153 77 NTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMT---PAEISESLGLTSIRDHTWHI 153 (174)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCC---HHHHHHHhCcccccCCceEE
Confidence 2357899999999999876433221 223333 22 3689999999999864221 11222222100001123579
Q ss_pred EEeccccCCCHHHHHHHHH
Q 005504 527 VYSTAIAGQSVDKIIVAAE 545 (693)
Q Consensus 527 v~iSA~~g~gv~~L~~~i~ 545 (693)
+++||++|.|++++++.|.
T Consensus 154 ~~~SA~~g~gi~e~~~~l~ 172 (174)
T cd04153 154 QGCCALTGEGLPEGLDWIA 172 (174)
T ss_pred EecccCCCCCHHHHHHHHh
Confidence 9999999999999999885
No 176
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.74 E-value=2.4e-17 Score=188.94 Aligned_cols=154 Identities=23% Similarity=0.366 Sum_probs=116.0
Q ss_pred cCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHHHHHHHhc
Q 005504 378 GRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRR 457 (693)
Q Consensus 378 G~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~ 457 (693)
|+||||||||+|+|.|.. ..+++++|+|++.....+.+ ++.++.+|||||+.++.... ....+.+.....+.
T Consensus 1 G~pNvGKSSL~N~Ltg~~-~~v~n~pG~Tv~~~~~~i~~-~~~~i~lvDtPG~~~~~~~s------~~e~v~~~~l~~~~ 72 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN-QTVGNWPGVTVEKKEGKLGF-QGEDIEIVDLPGIYSLTTFS------LEEEVARDYLLNEK 72 (591)
T ss_pred CCCCCCHHHHHHHHhCCC-CeecCCCCeEEEEEEEEEEE-CCeEEEEEECCCccccCccc------hHHHHHHHHHhhcC
Confidence 899999999999999875 57899999999998888875 67789999999998764321 11122232223458
Q ss_pred CCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcEEEeccccCCCH
Q 005504 458 SDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSV 537 (693)
Q Consensus 458 aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~piv~iSA~~g~gv 537 (693)
+|++++|+|+++. +.+..+..++.+.++|+++|+||+|+.+..... ...+.+.+. .+.|++++||++|.|+
T Consensus 73 aDvvI~VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~---~d~~~L~~~----lg~pvv~tSA~tg~Gi 143 (591)
T TIGR00437 73 PDLVVNVVDASNL--ERNLYLTLQLLELGIPMILALNLVDEAEKKGIR---IDEEKLEER----LGVPVVPTSATEGRGI 143 (591)
T ss_pred CCEEEEEecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHHHhCCCh---hhHHHHHHH----cCCCEEEEECCCCCCH
Confidence 9999999999873 455666677778899999999999986433211 112223332 2479999999999999
Q ss_pred HHHHHHHHHHH
Q 005504 538 DKIIVAAEMVD 548 (693)
Q Consensus 538 ~~L~~~i~~~~ 548 (693)
+++++.+.+..
T Consensus 144 ~eL~~~i~~~~ 154 (591)
T TIGR00437 144 ERLKDAIRKAI 154 (591)
T ss_pred HHHHHHHHHHh
Confidence 99999998753
No 177
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.74 E-value=4.6e-17 Score=162.87 Aligned_cols=158 Identities=19% Similarity=0.138 Sum_probs=104.4
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCC--ceecCCCCcccceEEEEEeCC--------------------------CC----
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDR--TIVSPISGTTRDAIDTEFTGP--------------------------EG---- 419 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~--~~v~~~~gtT~d~~~~~~~~~--------------------------~g---- 419 (693)
.+|+++|+.|+|||||+.+|.+... ..-....|.|...-...+.+. .+
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 3799999999999999999986521 111111122222111111100 02
Q ss_pred --CeEEEEeCccccchhhhccCCChhhHhHHHHHHHHHhcCCeEEEEeccccc-CCHHHHHHHHHHHHhCC-cEEEEEec
Q 005504 420 --QKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMAC-ITEQDCRIAERIEQEGK-GCLIVVNK 495 (693)
Q Consensus 420 --~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~-~~~~d~~~~~~l~~~~~-p~Ivv~NK 495 (693)
..+.||||||+.++ ...++.++..+|++++|+|+.++ ...+....+..+...+. |+|+|+||
T Consensus 81 ~~~~i~~iDtPG~~~~--------------~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK 146 (203)
T cd01888 81 LVRHVSFVDCPGHEIL--------------MATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNK 146 (203)
T ss_pred cccEEEEEECCChHHH--------------HHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEc
Confidence 68999999997543 33566678899999999999874 44555556666655554 79999999
Q ss_pred cCCCCCcchhhHHHHHHHHHHHHhcC--CCCcEEEeccccCCCHHHHHHHHHH
Q 005504 496 WDTIPNKNQQTATYYEQDVREKLRAL--DWAPIVYSTAIAGQSVDKIIVAAEM 546 (693)
Q Consensus 496 ~Dl~~~~~~~~~~~~~~~i~~~l~~~--~~~piv~iSA~~g~gv~~L~~~i~~ 546 (693)
+|+.... ......+.+++.+... .+.+++++||++|.|+++|++.+.+
T Consensus 147 ~Dl~~~~---~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~ 196 (203)
T cd01888 147 IDLVKEE---QALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVK 196 (203)
T ss_pred hhccCHH---HHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHH
Confidence 9996532 1222234455544432 3578999999999999999988864
No 178
>PRK12289 GTPase RsgA; Reviewed
Probab=99.74 E-value=2.3e-17 Score=176.88 Aligned_cols=144 Identities=26% Similarity=0.336 Sum_probs=108.1
Q ss_pred HHHHhcCeEEEEEeCCCCC-CHHHHHHHHHHHh-hcCCCcEEEEecccCCccchhh-hH-HHHHhcCCCCccccccCCCC
Q 005504 268 AAIEESCVIIFLVDGQAGL-TAADEEIADWLRK-NYMDKFIILAVNKCESPRKGIM-QV-SEFWSLGFSPLPISAISGTG 343 (693)
Q Consensus 268 ~~i~~adiil~VvD~~~~~-~~~d~~i~~~L~~-~~~~~p~ivv~NK~D~~~~~~~-~~-~~~~~~g~~~v~iSA~~g~g 343 (693)
.++.++|.+++|+|+.++. .. ..+.++|.. ...+.|+++|+||+|+...... .. ..+...|+.++++||.+|.|
T Consensus 85 ~~~aNvD~vLlV~d~~~p~~~~--~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~tg~G 162 (352)
T PRK12289 85 PPVANADQILLVFALAEPPLDP--WQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVETGIG 162 (352)
T ss_pred hhhhcCCEEEEEEECCCCCCCH--HHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCCCCC
Confidence 4588999999999997543 33 233344432 1257899999999999754321 22 22345788899999999999
Q ss_pred HHHHHHHHHhhcccccCccchhhhccCCcEEEeecCCCCChhhHHHHHhcCCCceecCCCC-------cccceEEEEEeC
Q 005504 344 TGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISG-------TTRDAIDTEFTG 416 (693)
Q Consensus 344 i~~Ll~~i~~~l~~~~~~~~~~~~~~~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~g-------tT~d~~~~~~~~ 416 (693)
+++|++.+.. ..++|+|.||||||||+|+|++.....++.++| ||++.....+.
T Consensus 163 I~eL~~~L~~------------------ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~- 223 (352)
T PRK12289 163 LEALLEQLRN------------------KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELP- 223 (352)
T ss_pred HHHHhhhhcc------------------ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECC-
Confidence 9999887732 147999999999999999999998888898888 89887554442
Q ss_pred CCCCeEEEEeCccccchhh
Q 005504 417 PEGQKFRLIDTAGIRKRAA 435 (693)
Q Consensus 417 ~~g~~i~liDTpG~~~~~~ 435 (693)
+|. .|+||||+..+..
T Consensus 224 -~g~--~liDTPG~~~~~l 239 (352)
T PRK12289 224 -NGG--LLADTPGFNQPDL 239 (352)
T ss_pred -CCc--EEEeCCCcccccc
Confidence 332 8999999987644
No 179
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.74 E-value=6.2e-17 Score=157.27 Aligned_cols=158 Identities=18% Similarity=0.136 Sum_probs=103.3
Q ss_pred EEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCC-CCCeEEEEeCccccchhhhccCCChhhHhHHHHH
Q 005504 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (693)
Q Consensus 373 ~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (693)
||+++|.+|||||||++++++... .....+.+..+.....+... ....+.+|||||+.++..+ .
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------------~ 66 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF-DKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCI--------------A 66 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhh--------------H
Confidence 799999999999999999997642 12222322233333334331 1247899999998664322 1
Q ss_pred HHHHhcCCeEEEEecccccCCHHH-HHHHHHHHHhC----CcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcE
Q 005504 452 FRAIRRSDVVALVIEAMACITEQD-CRIAERIEQEG----KGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPI 526 (693)
Q Consensus 452 ~~~i~~aDvvllViDa~~~~~~~d-~~~~~~l~~~~----~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~pi 526 (693)
..+++.+|++++|+|+++..+... ..|+..+.+.. .|+++|+||+|+.+.......+ +......... ..++
T Consensus 67 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~---~~~~~~~~~~-~~~~ 142 (170)
T cd04108 67 STYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALME---QDAIKLAAEM-QAEY 142 (170)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccH---HHHHHHHHHc-CCeE
Confidence 335789999999999987533332 34666665543 4689999999986532211111 1111121222 3689
Q ss_pred EEeccccCCCHHHHHHHHHHHHH
Q 005504 527 VYSTAIAGQSVDKIIVAAEMVDK 549 (693)
Q Consensus 527 v~iSA~~g~gv~~L~~~i~~~~~ 549 (693)
+++||++|.|++++|+.+.+...
T Consensus 143 ~e~Sa~~g~~v~~lf~~l~~~~~ 165 (170)
T cd04108 143 WSVSALSGENVREFFFRVAALTF 165 (170)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999987653
No 180
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.73 E-value=5.8e-17 Score=164.23 Aligned_cols=156 Identities=21% Similarity=0.243 Sum_probs=109.9
Q ss_pred EEEeecCCCCChhhHHHHHhcCCCce------e--c-----CCCCcccceEE------------------------EEEe
Q 005504 373 AIAIVGRPNVGKSSILNALVGEDRTI------V--S-----PISGTTRDAID------------------------TEFT 415 (693)
Q Consensus 373 ~I~ivG~~n~GKSSLin~llg~~~~~------v--~-----~~~gtT~d~~~------------------------~~~~ 415 (693)
+|+++|..++|||||+++|....... . . -..|.|..... ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 58999999999999999998421100 0 0 00122211000 1122
Q ss_pred CCCCCeEEEEeCccccchhhhccCCChhhHhHHHHHHHHHh--cCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEE
Q 005504 416 GPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIR--RSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVV 493 (693)
Q Consensus 416 ~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~--~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~ 493 (693)
..++.+.++||||+.++. ..+.+.+. .+|++++|+|+..+.+.++..++.++...++|+++|+
T Consensus 81 -~~~~~i~liDtpG~~~~~--------------~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvv 145 (224)
T cd04165 81 -KSSKLVTFIDLAGHERYL--------------KTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVV 145 (224)
T ss_pred -eCCcEEEEEECCCcHHHH--------------HHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEE
Confidence 246789999999997652 23344453 7999999999999999999999999999999999999
Q ss_pred eccCCCCCcchhhHHHHHHHHHHHHh-------------------------cCCCCcEEEeccccCCCHHHHHHHHHH
Q 005504 494 NKWDTIPNKNQQTATYYEQDVREKLR-------------------------ALDWAPIVYSTAIAGQSVDKIIVAAEM 546 (693)
Q Consensus 494 NK~Dl~~~~~~~~~~~~~~~i~~~l~-------------------------~~~~~piv~iSA~~g~gv~~L~~~i~~ 546 (693)
||||+.+.. ......+.+.+.+. ....+|++.+||.+|.|+++|...|..
T Consensus 146 NK~D~~~~~---~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 146 TKIDLAPAN---ILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred ECccccCHH---HHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 999986532 23334444554443 122469999999999999999987753
No 181
>PRK09866 hypothetical protein; Provisional
Probab=99.73 E-value=3.7e-16 Score=173.30 Aligned_cols=117 Identities=16% Similarity=0.184 Sum_probs=86.6
Q ss_pred CeEEEEeCccccchhhhccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCC--cEEEEEeccC
Q 005504 420 QKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGK--GCLIVVNKWD 497 (693)
Q Consensus 420 ~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~--p~Ivv~NK~D 497 (693)
..++|+||||+..... ..+. ..+.+.+..+|+++||+|+..+.+..|..+++.+.+.++ |+++|+||+|
T Consensus 230 ~QIIFVDTPGIhk~~~-----~~L~----k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKID 300 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQ-----PHLQ----KMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFD 300 (741)
T ss_pred CCEEEEECCCCCCccc-----hHHH----HHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEccc
Confidence 5799999999965211 0112 233457999999999999998889999999999988885 9999999999
Q ss_pred CCCCcchhhHHHHHHHHHHHHh--cCCCCcEEEeccccCCCHHHHHHHHHH
Q 005504 498 TIPNKNQQTATYYEQDVREKLR--ALDWAPIVYSTAIAGQSVDKIIVAAEM 546 (693)
Q Consensus 498 l~~~~~~~~~~~~~~~i~~~l~--~~~~~piv~iSA~~g~gv~~L~~~i~~ 546 (693)
+.+... ...+.+...+...+. ...+..++++||++|.|++.|++.|.+
T Consensus 301 l~dree-ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 301 QQDRNS-DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred CCCccc-chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 864322 223334444443333 223567999999999999999999976
No 182
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.73 E-value=3.7e-17 Score=190.47 Aligned_cols=158 Identities=22% Similarity=0.310 Sum_probs=120.8
Q ss_pred cCCcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHH
Q 005504 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (693)
Q Consensus 369 ~~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (693)
.+.+.|+++|++|+|||||+++|.+.. .......|+|.+.....+.+ ++..+.||||||+.+|...
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~-v~~~e~~GIT~~iga~~v~~-~~~~ItfiDTPGhe~F~~m------------ 353 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTN-VAAGEAGGITQHIGAYQVET-NGGKITFLDTPGHEAFTAM------------ 353 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCC-ccccccCceeeeccEEEEEE-CCEEEEEEECCCCccchhH------------
Confidence 466899999999999999999998754 33455677887766556664 5789999999999776332
Q ss_pred HHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHHHHHHH--HHh-c-CCCC
Q 005504 449 NRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVRE--KLR-A-LDWA 524 (693)
Q Consensus 449 ~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~--~l~-~-~~~~ 524 (693)
..+.+..+|++|+|+|+.++...+....+..+...++|+|+|+||+|+..... ..+...+.+ .+. . .+..
T Consensus 354 --~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~----e~V~~eL~~~~~~~e~~g~~v 427 (787)
T PRK05306 354 --RARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANP----DRVKQELSEYGLVPEEWGGDT 427 (787)
T ss_pred --HHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCH----HHHHHHHHHhcccHHHhCCCc
Confidence 23457889999999999999999999888888889999999999999964321 112222221 111 1 1237
Q ss_pred cEEEeccccCCCHHHHHHHHHH
Q 005504 525 PIVYSTAIAGQSVDKIIVAAEM 546 (693)
Q Consensus 525 piv~iSA~~g~gv~~L~~~i~~ 546 (693)
+++++||++|.|+++|++.|..
T Consensus 428 p~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 428 IFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred eEEEEeCCCCCCchHHHHhhhh
Confidence 8999999999999999999864
No 183
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.73 E-value=3.2e-17 Score=157.46 Aligned_cols=152 Identities=19% Similarity=0.217 Sum_probs=102.7
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCC--eEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~--~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
++|+++|.+|||||||++++++.... ..+..|+.+.....+.. ++. .+.+|||||+.++..+.
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~------------ 66 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFI--EKYDPTIEDFYRKEIEV-DSSPSVLEILDTAGTEQFASMR------------ 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCchhheEEEEEEE-CCEEEEEEEEECCCcccccchH------------
Confidence 58999999999999999999975432 22333443333334433 343 57789999987754332
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHH----hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~----~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~ 524 (693)
..+++.+|++++|+|.++..+.++. .|+..+.+ .++|+++|+||+|+........ . ....+.+. . +.
T Consensus 67 --~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~-~-~~~~~~~~---~-~~ 138 (163)
T cd04176 67 --DLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSS-A-EGRALAEE---W-GC 138 (163)
T ss_pred --HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCH-H-HHHHHHHH---h-CC
Confidence 1246889999999999886554443 35555544 3789999999999864322111 1 11222221 2 36
Q ss_pred cEEEeccccCCCHHHHHHHHHH
Q 005504 525 PIVYSTAIAGQSVDKIIVAAEM 546 (693)
Q Consensus 525 piv~iSA~~g~gv~~L~~~i~~ 546 (693)
+++++||++|.|++++|..+.+
T Consensus 139 ~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04176 139 PFMETSAKSKTMVNELFAEIVR 160 (163)
T ss_pred EEEEecCCCCCCHHHHHHHHHH
Confidence 8999999999999999998864
No 184
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.73 E-value=4.7e-17 Score=161.45 Aligned_cols=141 Identities=16% Similarity=0.134 Sum_probs=107.1
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCc------ee---------eecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCc
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGN------RA---------IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQ 228 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~------~~---------~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~ 228 (693)
.+|+++||+|+|||||+++|++.. .. ......|+|.+.....+.+++..+.++||||+..
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~----- 77 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD----- 77 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHH-----
Confidence 369999999999999999998641 00 1112568888888777788889999999999853
Q ss_pred hhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCc-EE
Q 005504 229 PNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF-II 307 (693)
Q Consensus 229 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p-~i 307 (693)
+...+..++..+|++++|+|+..|...++.+++.++.+ .++| +|
T Consensus 78 ---------------------------------~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~--~~~~~iI 122 (195)
T cd01884 78 ---------------------------------YIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQ--VGVPYIV 122 (195)
T ss_pred ---------------------------------HHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCcEE
Confidence 22455678899999999999999999999999999887 4676 78
Q ss_pred EEecccCCccchh-hh-----HHH-HHhcC-----CCCccccccCCCCH
Q 005504 308 LAVNKCESPRKGI-MQ-----VSE-FWSLG-----FSPLPISAISGTGT 344 (693)
Q Consensus 308 vv~NK~D~~~~~~-~~-----~~~-~~~~g-----~~~v~iSA~~g~gi 344 (693)
+|+||+|+..... .. ... +...| .+++|+||.+|.|+
T Consensus 123 vviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 123 VFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCC
Confidence 9999999864221 11 111 12234 35899999999984
No 185
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.73 E-value=5.4e-17 Score=163.94 Aligned_cols=158 Identities=16% Similarity=0.113 Sum_probs=102.9
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (693)
.||+++|.+|||||||++++++..... ..+.+..+.....+ ....+.+|||||+.++..+.
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~--~~~Tig~~~~~~~~---~~~~l~iwDt~G~e~~~~l~-------------- 61 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD--TVSTVGGAFYLKQW---GPYNISIWDTAGREQFHGLG-------------- 61 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC--CCCccceEEEEEEe---eEEEEEEEeCCCcccchhhH--------------
Confidence 479999999999999999999765332 22212122221111 34578999999987653321
Q ss_pred HHHHhcCCeEEEEecccccCCHHHHH-HHHHHHH---hCCcEEEEEeccCCCCC------------------cchhhHHH
Q 005504 452 FRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ---EGKGCLIVVNKWDTIPN------------------KNQQTATY 509 (693)
Q Consensus 452 ~~~i~~aDvvllViDa~~~~~~~d~~-~~~~l~~---~~~p~Ivv~NK~Dl~~~------------------~~~~~~~~ 509 (693)
..+++.+|++|+|+|+++..+.++.. ++..+.+ .+.|+|+|+||+|+... ......++
T Consensus 62 ~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e 141 (220)
T cd04126 62 SMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLED 141 (220)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHH
Confidence 22578999999999999876666653 3443433 35799999999999651 01011111
Q ss_pred HHHHHHHHH----------hcCCCCcEEEeccccCCCHHHHHHHHHHHHH
Q 005504 510 YEQDVREKL----------RALDWAPIVYSTAIAGQSVDKIIVAAEMVDK 549 (693)
Q Consensus 510 ~~~~i~~~l----------~~~~~~piv~iSA~~g~gv~~L~~~i~~~~~ 549 (693)
.. .+.+.+ ....+.+++++||++|.||+++|..+.+...
T Consensus 142 ~~-~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 142 AK-AFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred HH-HHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 11 111111 1122368999999999999999999987643
No 186
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.73 E-value=5.2e-17 Score=167.14 Aligned_cols=155 Identities=19% Similarity=0.201 Sum_probs=107.3
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCC--CeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
.+|+++|.+|||||||++++++.... ..+.+|+.+.....+.. ++ ..+.+|||+|..++..+.
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~--~~y~pTi~d~~~k~~~i-~~~~~~l~I~Dt~G~~~~~~~~------------ 65 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFE--EQYTPTIEDFHRKLYSI-RGEVYQLDILDTSGNHPFPAMR------------ 65 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCC--CCCCCChhHhEEEEEEE-CCEEEEEEEEECCCChhhhHHH------------
Confidence 47999999999999999999865422 24445555554444443 44 367899999986542211
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHH------------hCCcEEEEEeccCCCCCcchhhHHHHHHHHHH
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ------------EGKGCLIVVNKWDTIPNKNQQTATYYEQDVRE 516 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~------------~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~ 516 (693)
..++..+|++|+|+|+++..+.++. .|+..+.+ .++|+|+|+||+|+...... ..+ ++.+
T Consensus 66 --~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v-~~~----ei~~ 138 (247)
T cd04143 66 --RLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREV-QRD----EVEQ 138 (247)
T ss_pred --HHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhcccc-CHH----HHHH
Confidence 1246789999999999887655543 35555543 26899999999999642221 222 2333
Q ss_pred HHhcCCCCcEEEeccccCCCHHHHHHHHHHHH
Q 005504 517 KLRALDWAPIVYSTAIAGQSVDKIIVAAEMVD 548 (693)
Q Consensus 517 ~l~~~~~~piv~iSA~~g~gv~~L~~~i~~~~ 548 (693)
.+......+++++||++|.|++++|+.|.+..
T Consensus 139 ~~~~~~~~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 139 LVGGDENCAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred HHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 33322346899999999999999999998753
No 187
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.73 E-value=5.5e-17 Score=155.42 Aligned_cols=154 Identities=19% Similarity=0.179 Sum_probs=102.5
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCC---CCCeEEEEeCccccchhhhccCCChhhHhHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP---EGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~---~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (693)
.||+++|.+|+|||||+|++.+.... ....++.+.+.....+.+. ....+.+|||||+.++..+
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------------ 67 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFT-KDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAI------------ 67 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHh------------
Confidence 48999999999999999999975422 2222333334333333331 2347999999998654222
Q ss_pred HHHHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHH--hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCc
Q 005504 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ--EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (693)
Q Consensus 449 ~~~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~--~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~p 525 (693)
...+++.+|++++|+|+++..+.+.. .|+..+.. .+.|+++|+||+|+........ + +........ +.|
T Consensus 68 --~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~-~----~~~~~~~~~-~~~ 139 (162)
T cd04106 68 --TKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITN-E----EAEALAKRL-QLP 139 (162)
T ss_pred --HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCH-H----HHHHHHHHc-CCe
Confidence 23367899999999999876544443 34444443 3789999999999965332211 1 111112222 468
Q ss_pred EEEeccccCCCHHHHHHHHHH
Q 005504 526 IVYSTAIAGQSVDKIIVAAEM 546 (693)
Q Consensus 526 iv~iSA~~g~gv~~L~~~i~~ 546 (693)
++++||++|.|++++++.+..
T Consensus 140 ~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 140 LFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 999999999999999998864
No 188
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.73 E-value=3.4e-17 Score=190.75 Aligned_cols=153 Identities=22% Similarity=0.279 Sum_probs=121.5
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhh
Q 005504 160 EHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (693)
Q Consensus 160 ~~~~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~ 239 (693)
..+.|+|+|+||+|+|||||+++|++.+. .....+|+|.+.....+.|++..+.+|||||+..+.
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v-~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~-------------- 351 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNV-AAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFT-------------- 351 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCc-cccccCceeeeccEEEEEECCEEEEEEECCCCccch--------------
Confidence 34678999999999999999999998763 345667899988888888999999999999997532
Q ss_pred cccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCccch
Q 005504 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKG 319 (693)
Q Consensus 240 ~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~ 319 (693)
....+++..+|++|||+|+.+|..++..+.+.+++. .+.|+|+|+||+|+....
T Consensus 352 ------------------------~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~--~~vPiIVviNKiDl~~a~ 405 (787)
T PRK05306 352 ------------------------AMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKA--AGVPIIVAINKIDKPGAN 405 (787)
T ss_pred ------------------------hHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHh--cCCcEEEEEECccccccC
Confidence 223366788999999999999999998888888776 589999999999996532
Q ss_pred hhhH-HHHHh-------cC--CCCccccccCCCCHHHHHHHHHh
Q 005504 320 IMQV-SEFWS-------LG--FSPLPISAISGTGTGELLDLVCS 353 (693)
Q Consensus 320 ~~~~-~~~~~-------~g--~~~v~iSA~~g~gi~~Ll~~i~~ 353 (693)
.... .++.. +| ++++++||.+|.|+++|++.|..
T Consensus 406 ~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 406 PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred HHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhh
Confidence 1111 11111 12 46899999999999999999874
No 189
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.73 E-value=5.2e-17 Score=155.39 Aligned_cols=151 Identities=19% Similarity=0.191 Sum_probs=108.4
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (693)
+|+++|++|||||||+|++++.+. .....++++.+.....+.+++ ..+.+|||||....
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~------------------ 62 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTF-DNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERF------------------ 62 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHH------------------
Confidence 699999999999999999998864 335667778787777777776 35899999996431
Q ss_pred CCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH-HHHHHH-HhhcCCCcEEEEecccCCccchh
Q 005504 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWL-RKNYMDKFIILAVNKCESPRKGI 320 (693)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~-~i~~~L-~~~~~~~p~ivv~NK~D~~~~~~ 320 (693)
.......+..+|++++|+|..++-+..+. .++..+ .....+.|+++|+||+|+.....
T Consensus 63 --------------------~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~ 122 (161)
T cd01861 63 --------------------RSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQ 122 (161)
T ss_pred --------------------HHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCc
Confidence 12334567889999999999875443332 233333 22223589999999999954321
Q ss_pred h---hHHH-HHhcCCCCccccccCCCCHHHHHHHHHhh
Q 005504 321 M---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSE 354 (693)
Q Consensus 321 ~---~~~~-~~~~g~~~v~iSA~~g~gi~~Ll~~i~~~ 354 (693)
. .... ....+..++++||.+|.|++++++.|.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 123 VSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred cCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 1 1111 22346678999999999999999999764
No 190
>COG2262 HflX GTPases [General function prediction only]
Probab=99.73 E-value=8e-17 Score=169.90 Aligned_cols=165 Identities=21% Similarity=0.300 Sum_probs=124.9
Q ss_pred hccCCcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHh
Q 005504 367 EENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEAL 446 (693)
Q Consensus 367 ~~~~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~ 446 (693)
..+..+.|+++|.+|+|||||+|+|++.. ..+.+...+|.|+....+.+.+|..+.|.||-|+.+.-.. .-++
T Consensus 188 ~~~~~p~vaLvGYTNAGKSTL~N~LT~~~-~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~----~LV~-- 260 (411)
T COG2262 188 SRSGIPLVALVGYTNAGKSTLFNALTGAD-VYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPH----PLVE-- 260 (411)
T ss_pred cccCCCeEEEEeeccccHHHHHHHHhccC-eeccccccccccCceeEEEeCCCceEEEecCccCcccCCh----HHHH--
Confidence 34567899999999999999999999774 5577888899999988888877899999999999875321 1222
Q ss_pred HHHHHHHHHhcCCeEEEEecccccCCHHHHHH-HHHHHH---hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCC
Q 005504 447 SVNRAFRAIRRSDVVALVIEAMACITEQDCRI-AERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD 522 (693)
Q Consensus 447 ~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~-~~~l~~---~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~ 522 (693)
+.+.++.....||++++|+|++++...+.... .+.+.+ ..+|+|+|+||+|++.... ....+ ....
T Consensus 261 AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~------~~~~~----~~~~ 330 (411)
T COG2262 261 AFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE------ILAEL----ERGS 330 (411)
T ss_pred HHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh------hhhhh----hhcC
Confidence 34577888899999999999999855544432 233333 4689999999999876432 01111 1111
Q ss_pred CCcEEEeccccCCCHHHHHHHHHHHHH
Q 005504 523 WAPIVYSTAIAGQSVDKIIVAAEMVDK 549 (693)
Q Consensus 523 ~~piv~iSA~~g~gv~~L~~~i~~~~~ 549 (693)
.+.|++||++|.|++.|++.|.....
T Consensus 331 -~~~v~iSA~~~~gl~~L~~~i~~~l~ 356 (411)
T COG2262 331 -PNPVFISAKTGEGLDLLRERIIELLS 356 (411)
T ss_pred -CCeEEEEeccCcCHHHHHHHHHHHhh
Confidence 25999999999999999999987654
No 191
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.73 E-value=3.3e-17 Score=162.24 Aligned_cols=160 Identities=16% Similarity=0.151 Sum_probs=105.2
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceE-EEEEeCCCCC--eEEEEeCccccchhhhccCCChhhHhHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAI-DTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSV 448 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~-~~~~~~~~g~--~i~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (693)
.||+++|.+|||||||++++++... ....+.+|..... ...+.. ++. .+.+|||||..++..+.
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~-~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~----------- 67 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRF-LVGPYQNTIGAAFVAKRMVV-GERVVTLGIWDTAGSERYEAMS----------- 67 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCc-CCcCcccceeeEEEEEEEEE-CCEEEEEEEEECCCchhhhhhh-----------
Confidence 3899999999999999999997643 2333444443322 223333 343 56799999986642221
Q ss_pred HHHHHHHhcCCeEEEEecccccCCHHH-HHHHHHHHHh--CCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCc
Q 005504 449 NRAFRAIRRSDVVALVIEAMACITEQD-CRIAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (693)
Q Consensus 449 ~~~~~~i~~aDvvllViDa~~~~~~~d-~~~~~~l~~~--~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~p 525 (693)
...++.+|++++|+|+++..+.+. ..|+..+... +.|+++|+||+|+......... ....++.+.... ...+
T Consensus 68 ---~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~-v~~~~~~~~~~~-~~~~ 142 (193)
T cd04118 68 ---RIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQ-VDFHDVQDFADE-IKAQ 142 (193)
T ss_pred ---HhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCc-cCHHHHHHHHHH-cCCe
Confidence 124678999999999987654443 3466666654 6899999999998643211000 001112222222 2468
Q ss_pred EEEeccccCCCHHHHHHHHHHHHH
Q 005504 526 IVYSTAIAGQSVDKIIVAAEMVDK 549 (693)
Q Consensus 526 iv~iSA~~g~gv~~L~~~i~~~~~ 549 (693)
++++||++|.|+++|++.+.+.+.
T Consensus 143 ~~~~Sa~~~~gv~~l~~~i~~~~~ 166 (193)
T cd04118 143 HFETSSKTGQNVDELFQKVAEDFV 166 (193)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999987653
No 192
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=3e-17 Score=155.54 Aligned_cols=157 Identities=19% Similarity=0.219 Sum_probs=116.4
Q ss_pred CcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCC--eEEEEeCccccchhhhccCCChhhHhHH
Q 005504 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSV 448 (693)
Q Consensus 371 ~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~--~i~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (693)
..||+++|..+||||||++++.-. .+.....+.+.+|.....+.+ .|+ +++||||||++||..+.+
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd-~fd~~YqATIGiDFlskt~~l-~d~~vrLQlWDTAGQERFrslip---------- 89 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYD-KFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIP---------- 89 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHh-hhcccccceeeeEEEEEEEEE-cCcEEEEEEEecccHHHHhhhhh----------
Confidence 379999999999999999999843 344445555666666666665 444 789999999999866532
Q ss_pred HHHHHHHhcCCeEEEEecccccCCHHH-HHHHHHHHHhC----CcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005504 449 NRAFRAIRRSDVVALVIEAMACITEQD-CRIAERIEQEG----KGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (693)
Q Consensus 449 ~~~~~~i~~aDvvllViDa~~~~~~~d-~~~~~~l~~~~----~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~ 523 (693)
.+++.+.++|+|+|.++.-+.++ .+|++.+..++ .-+++|+||.||.++......+ -....+.+ +
T Consensus 90 ----sY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eE-----g~~kAkel-~ 159 (221)
T KOG0094|consen 90 ----SYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEE-----GERKAKEL-N 159 (221)
T ss_pred ----hhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHH-----HHHHHHHh-C
Confidence 26899999999999998766655 46888887653 4477899999998764432211 11122222 4
Q ss_pred CcEEEeccccCCCHHHHHHHHHHHHH
Q 005504 524 APIVYSTAIAGQSVDKIIVAAEMVDK 549 (693)
Q Consensus 524 ~piv~iSA~~g~gv~~L~~~i~~~~~ 549 (693)
+-++.+||+.|.||..||..|.....
T Consensus 160 a~f~etsak~g~NVk~lFrrIaa~l~ 185 (221)
T KOG0094|consen 160 AEFIETSAKAGENVKQLFRRIAAALP 185 (221)
T ss_pred cEEEEecccCCCCHHHHHHHHHHhcc
Confidence 68999999999999999999876643
No 193
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.73 E-value=3.8e-17 Score=186.26 Aligned_cols=151 Identities=22% Similarity=0.305 Sum_probs=117.7
Q ss_pred CCCeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCe-eEEEEecCCcccccCCchhhhhhhhhhhc
Q 005504 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH-EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (693)
Q Consensus 162 ~~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~-~~~lvDTpG~~~~~~~~~~~~~~~~~~~~ 240 (693)
+.|+|+++|++|+|||||+++|.+.+. .....+|+|.+.....+.+.+. .+.+|||||+..+.
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v-~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~--------------- 149 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKV-AQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFT--------------- 149 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCc-ccccCCceeecceEEEEEECCCcEEEEEECCCCcchh---------------
Confidence 468999999999999999999998763 3455678998888777788655 89999999997522
Q ss_pred ccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCccchh
Q 005504 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI 320 (693)
Q Consensus 241 ~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~~ 320 (693)
....+++..+|++++|+|+.++..++..+.++.++. .+.|+++++||+|+.....
T Consensus 150 -----------------------~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~--~~vPiIVviNKiDl~~~~~ 204 (587)
T TIGR00487 150 -----------------------SMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKA--ANVPIIVAINKIDKPEANP 204 (587)
T ss_pred -----------------------hHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHH--cCCCEEEEEECcccccCCH
Confidence 222356788999999999999999988888887766 5889999999999864321
Q ss_pred hhHH-HHHhcC---------CCCccccccCCCCHHHHHHHHHh
Q 005504 321 MQVS-EFWSLG---------FSPLPISAISGTGTGELLDLVCS 353 (693)
Q Consensus 321 ~~~~-~~~~~g---------~~~v~iSA~~g~gi~~Ll~~i~~ 353 (693)
.... .+...| .+++++||.+|.|+++|++.|..
T Consensus 205 e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 205 DRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred HHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 1111 111122 25799999999999999999864
No 194
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.73 E-value=5.8e-17 Score=161.45 Aligned_cols=161 Identities=16% Similarity=0.092 Sum_probs=106.3
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (693)
+|+|+|.+|||||||++++++.+... ...|+++.+.....+.++| ..+.+|||||.........
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~-~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~------------- 67 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPE-EYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAG------------- 67 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCc-ccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccch-------------
Confidence 69999999999999999999875322 2344444444334456677 4578999999864221100
Q ss_pred CCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH-HHHHHHHhh----cCCCcEEEEecccCCcc
Q 005504 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN----YMDKFIILAVNKCESPR 317 (693)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~-~i~~~L~~~----~~~~p~ivv~NK~D~~~ 317 (693)
+........+++.+|++|+|+|+.++.+.+.. .+.+.+... ..+.|+++|+||+|+..
T Consensus 68 -----------------~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~ 130 (198)
T cd04142 68 -----------------QEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR 130 (198)
T ss_pred -----------------hHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc
Confidence 00112234567899999999999876444322 233333322 24689999999999965
Q ss_pred chhhh---HHHHH--hcCCCCccccccCCCCHHHHHHHHHhhcc
Q 005504 318 KGIMQ---VSEFW--SLGFSPLPISAISGTGTGELLDLVCSELK 356 (693)
Q Consensus 318 ~~~~~---~~~~~--~~g~~~v~iSA~~g~gi~~Ll~~i~~~l~ 356 (693)
..... ...+. ..+..++++||++|.|+++|++.+.+.+-
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~~~~ 174 (198)
T cd04142 131 HRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELLISAT 174 (198)
T ss_pred cccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence 32211 11221 23567899999999999999999987654
No 195
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.73 E-value=6.9e-17 Score=155.11 Aligned_cols=151 Identities=17% Similarity=0.109 Sum_probs=96.1
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (693)
.||+++|.+|||||||++++...... ...|.+..+. ..+.. ....+.+|||||+.++..+ .
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~--~~~pt~g~~~--~~~~~-~~~~~~l~D~~G~~~~~~~--------------~ 61 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNV--ETVEY-KNISFTVWDVGGQDKIRPL--------------W 61 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc--ccCCCCCcce--EEEEE-CCEEEEEEECCCCHhHHHH--------------H
Confidence 48999999999999999999654322 2233222222 22333 4668999999998664322 2
Q ss_pred HHHHhcCCeEEEEecccccCCHHH-HHHHHHHHH----hCCcEEEEEeccCCCCCcchhhHHHHHHHHH-HHHhcCCCCc
Q 005504 452 FRAIRRSDVVALVIEAMACITEQD-CRIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVR-EKLRALDWAP 525 (693)
Q Consensus 452 ~~~i~~aDvvllViDa~~~~~~~d-~~~~~~l~~----~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~-~~l~~~~~~p 525 (693)
..+++.||++|+|+|+++..+..+ ..++..+.. .++|+++|+||+|+..... ..++...+. ..+. .....
T Consensus 62 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~~~~~~~~-~~~~~ 137 (159)
T cd04150 62 RHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMS---AAEVTDKLGLHSLR-NRNWY 137 (159)
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCC---HHHHHHHhCccccC-CCCEE
Confidence 236799999999999987533222 223333322 2589999999999954321 112222211 0011 11235
Q ss_pred EEEeccccCCCHHHHHHHHH
Q 005504 526 IVYSTAIAGQSVDKIIVAAE 545 (693)
Q Consensus 526 iv~iSA~~g~gv~~L~~~i~ 545 (693)
++++||++|.|++++|++|.
T Consensus 138 ~~~~Sak~g~gv~~~~~~l~ 157 (159)
T cd04150 138 IQATCATSGDGLYEGLDWLS 157 (159)
T ss_pred EEEeeCCCCCCHHHHHHHHh
Confidence 77899999999999999885
No 196
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.73 E-value=2.8e-17 Score=149.16 Aligned_cols=116 Identities=41% Similarity=0.582 Sum_probs=94.6
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCC
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (693)
+|+|+|.+|+|||||+|+|++.+.+.++..+++|++..++.+.+++..+.++||||+........
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~--------------- 65 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDN--------------- 65 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHH---------------
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhH---------------
Confidence 58999999999999999999987788999999999998888889999999999999975221110
Q ss_pred CCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecc
Q 005504 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNK 312 (693)
Q Consensus 245 g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK 312 (693)
... ....+.+.+..+|+++||+|+.++....+..++++|+ .++|+++|+||
T Consensus 66 -------------~~~-~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 66 -------------DGK-EIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp -------------HHH-HHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH---TTSEEEEEEES
T ss_pred -------------HHH-HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh---cCCCEEEEEcC
Confidence 001 2244666778999999999988866666778888885 48999999998
No 197
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.73 E-value=7e-17 Score=154.60 Aligned_cols=153 Identities=18% Similarity=0.121 Sum_probs=102.9
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCce-ecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTI-VSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~-v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (693)
+||+++|.+|||||||+|+|++..... ..+..|.+.......+. .....+.+|||||+.++...
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~-------------- 65 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVD-GKKVKLAIWDTAGQERFRTL-------------- 65 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEEC-CEEEEEEEEECCCchhhhhh--------------
Confidence 489999999999999999999865432 33444444433333332 12347899999998654221
Q ss_pred HHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHH----hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCc
Q 005504 451 AFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (693)
Q Consensus 451 ~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~----~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~p 525 (693)
....++.+|++++|+|+++..+.+.. .|+..+.. .+.|+++|+||+|+..... . .++ ..+.... ..++
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~-~-~~~----~~~~~~~-~~~~ 138 (161)
T cd01863 66 TSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREV-T-REE----GLKFARK-HNML 138 (161)
T ss_pred hHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccccccc-C-HHH----HHHHHHH-cCCE
Confidence 12356889999999999876554443 24444443 3689999999999973221 1 111 1112222 2578
Q ss_pred EEEeccccCCCHHHHHHHHHH
Q 005504 526 IVYSTAIAGQSVDKIIVAAEM 546 (693)
Q Consensus 526 iv~iSA~~g~gv~~L~~~i~~ 546 (693)
++++||++|.|++++++.+.+
T Consensus 139 ~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 139 FIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred EEEEecCCCCCHHHHHHHHHH
Confidence 999999999999999988764
No 198
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.73 E-value=6.9e-17 Score=158.78 Aligned_cols=159 Identities=14% Similarity=0.176 Sum_probs=103.2
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCC--CeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
+||+++|.+|||||||++++++.... ....+....+.....+.. ++ ..+.+|||+|..++...
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~-~~~~~T~g~~~~~~~i~~-~~~~~~l~iwDt~G~~~~~~~------------- 65 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFD-EDYIQTLGVNFMEKTISI-RGTEITFSIWDLGGQREFINM------------- 65 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCccceEEEEEEEEE-CCEEEEEEEEeCCCchhHHHh-------------
Confidence 48999999999999999999876422 122232223333333443 33 46899999998664322
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHHh---CCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCc
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~~---~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~p 525 (693)
...+++.||++++|+|+++..+.++. .|+..+... ..| |+|+||+|+...........+.+...+.... .+.+
T Consensus 66 -~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~-~~~~ 142 (182)
T cd04128 66 -LPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKA-MKAP 142 (182)
T ss_pred -hHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHH-cCCE
Confidence 12367899999999999887666554 466666542 345 7889999996321111111122222222222 2478
Q ss_pred EEEeccccCCCHHHHHHHHHHHH
Q 005504 526 IVYSTAIAGQSVDKIIVAAEMVD 548 (693)
Q Consensus 526 iv~iSA~~g~gv~~L~~~i~~~~ 548 (693)
++++||++|.|++++|+.+.+..
T Consensus 143 ~~e~SAk~g~~v~~lf~~l~~~l 165 (182)
T cd04128 143 LIFCSTSHSINVQKIFKIVLAKA 165 (182)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999987643
No 199
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.73 E-value=8.3e-17 Score=155.30 Aligned_cols=153 Identities=16% Similarity=0.152 Sum_probs=102.9
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEE-EEEeCCCC--CeEEEEeCccccchhhhccCCChhhHhHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAID-TEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~-~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (693)
+||+++|.+|||||||++++.+... ...++.|+..... ..+.. ++ ..+.+|||||+.++...
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~------------ 67 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKF--MADCPHTIGVEFGTRIIEV-NGQKIKLQIWDTAGQERFRAV------------ 67 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CCCCCcccceeEEEEEEEE-CCEEEEEEEEECCCcHHHHHH------------
Confidence 6899999999999999999997642 2333333322222 22222 33 36899999998664321
Q ss_pred HHHHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHH---hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005504 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (693)
Q Consensus 449 ~~~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~---~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~ 524 (693)
....++.+|++|+|+|+++..+.+.. .|+..+.. .+.|+++|+||+|+....... .+ +..+.... ...
T Consensus 68 --~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~-~~----~~~~~~~~-~~~ 139 (166)
T cd04122 68 --TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVT-YE----EAKQFADE-NGL 139 (166)
T ss_pred --HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcC-HH----HHHHHHHH-cCC
Confidence 23367899999999999987555544 35554443 357899999999996543221 11 12222222 246
Q ss_pred cEEEeccccCCCHHHHHHHHHHH
Q 005504 525 PIVYSTAIAGQSVDKIIVAAEMV 547 (693)
Q Consensus 525 piv~iSA~~g~gv~~L~~~i~~~ 547 (693)
+++++||++|.|++++|..+.+.
T Consensus 140 ~~~e~Sa~~~~~i~e~f~~l~~~ 162 (166)
T cd04122 140 LFLECSAKTGENVEDAFLETAKK 162 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 89999999999999999887643
No 200
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.73 E-value=6.7e-17 Score=152.92 Aligned_cols=153 Identities=17% Similarity=0.202 Sum_probs=103.4
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCcee-cCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIV-SPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v-~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (693)
.||+++|.+|+|||||+|++++...... .+..+.+.......... ....+.+|||||+.++.. .
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~--------------~ 65 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDG-KTVKLQIWDTAGQERFRS--------------I 65 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECC-EEEEEEEEecCChHHHHH--------------H
Confidence 4799999999999999999998764433 23333333333323221 235789999999855321 2
Q ss_pred HHHHHhcCCeEEEEecccccCCHHH-HHHHHHHHHhC---CcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcE
Q 005504 451 AFRAIRRSDVVALVIEAMACITEQD-CRIAERIEQEG---KGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPI 526 (693)
Q Consensus 451 ~~~~i~~aDvvllViDa~~~~~~~d-~~~~~~l~~~~---~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~pi 526 (693)
....++.+|++++|+|+.+..+... ..|+..+.... +|+++|+||+|+...... ..+ .+.+.... ...++
T Consensus 66 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~----~~~~~~~~-~~~~~ 139 (159)
T cd00154 66 TPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQV-STE----EAQQFAKE-NGLLF 139 (159)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccc-cHH----HHHHHHHH-cCCeE
Confidence 3446788999999999987433333 34666666654 899999999999622221 112 22222222 35789
Q ss_pred EEeccccCCCHHHHHHHHH
Q 005504 527 VYSTAIAGQSVDKIIVAAE 545 (693)
Q Consensus 527 v~iSA~~g~gv~~L~~~i~ 545 (693)
+++||++|.|++++++.+.
T Consensus 140 ~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 140 FETSAKTGENVEELFQSLA 158 (159)
T ss_pred EEEecCCCCCHHHHHHHHh
Confidence 9999999999999999875
No 201
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.73 E-value=9.3e-17 Score=182.77 Aligned_cols=154 Identities=21% Similarity=0.282 Sum_probs=110.2
Q ss_pred CCCeEEEEcCCCCChhhHHHHhhcCceeeecCC-CCceeeeEEEEEEec------------------CeeEEEEecCCcc
Q 005504 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDE-PGVTRDRMYGRSFWG------------------EHEFMLVDTGGVL 222 (693)
Q Consensus 162 ~~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~-~~~T~~~~~~~~~~~------------------~~~~~lvDTpG~~ 222 (693)
+.|.|+++||+|+|||||+|+|++... .... .++|++.....+.+. ...+.+|||||+.
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v--~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e 80 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAV--AKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHE 80 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccc--ccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcH
Confidence 468999999999999999999998753 2333 346665333322221 1248999999986
Q ss_pred cccCCchhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcC
Q 005504 223 NVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYM 302 (693)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~ 302 (693)
.+. .....++..+|++++|+|++++..+++.+.+++++. .
T Consensus 81 ~f~--------------------------------------~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~--~ 120 (590)
T TIGR00491 81 AFT--------------------------------------NLRKRGGALADLAILIVDINEGFKPQTQEALNILRM--Y 120 (590)
T ss_pred hHH--------------------------------------HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHH--c
Confidence 421 223356789999999999999999999888888876 4
Q ss_pred CCcEEEEecccCCccchh--------------h-----hH--------HHHHhc---------------CCCCccccccC
Q 005504 303 DKFIILAVNKCESPRKGI--------------M-----QV--------SEFWSL---------------GFSPLPISAIS 340 (693)
Q Consensus 303 ~~p~ivv~NK~D~~~~~~--------------~-----~~--------~~~~~~---------------g~~~v~iSA~~ 340 (693)
+.|+++|+||+|+..... . .. ..+... ..+++|+||.+
T Consensus 121 ~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~t 200 (590)
T TIGR00491 121 KTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAIT 200 (590)
T ss_pred CCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCC
Confidence 889999999999863110 0 00 001111 13679999999
Q ss_pred CCCHHHHHHHHHhhccc
Q 005504 341 GTGTGELLDLVCSELKK 357 (693)
Q Consensus 341 g~gi~~Ll~~i~~~l~~ 357 (693)
|.|+++|++.|..+.+.
T Consensus 201 GeGideLl~~l~~l~~~ 217 (590)
T TIGR00491 201 GEGIPELLTMLAGLAQQ 217 (590)
T ss_pred CCChhHHHHHHHHHHHH
Confidence 99999999988765543
No 202
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.73 E-value=6.5e-17 Score=157.41 Aligned_cols=153 Identities=18% Similarity=0.183 Sum_probs=104.3
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCC--CeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
.+|+++|.+|||||||++++++.... ..+..|..+.....+.. ++ ..+.+|||||..++..+
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~--~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~l------------- 66 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFP--DYHDPTIEDAYKQQARI-DNEPALLDILDTAGQAEFTAM------------- 66 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC--CCcCCcccceEEEEEEE-CCEEEEEEEEeCCCchhhHHH-------------
Confidence 68999999999999999999975432 22233333333333333 34 36889999998664332
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHHH-HHHHHHH----hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~~-~~~~l~~----~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~ 524 (693)
...+++.+|++|+|+|+++..+.+... |...+.. .++|+|+|+||+|+........ + +..+..... ++
T Consensus 67 -~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~-~----~~~~~a~~~-~~ 139 (172)
T cd04141 67 -RDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTT-E----EGRNLAREF-NC 139 (172)
T ss_pred -hHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCH-H----HHHHHHHHh-CC
Confidence 123578899999999999887776654 4444433 3689999999999864332211 1 111111222 47
Q ss_pred cEEEeccccCCCHHHHHHHHHHH
Q 005504 525 PIVYSTAIAGQSVDKIIVAAEMV 547 (693)
Q Consensus 525 piv~iSA~~g~gv~~L~~~i~~~ 547 (693)
+++++||++|.||+++|+.+.+.
T Consensus 140 ~~~e~Sa~~~~~v~~~f~~l~~~ 162 (172)
T cd04141 140 PFFETSAALRHYIDDAFHGLVRE 162 (172)
T ss_pred EEEEEecCCCCCHHHHHHHHHHH
Confidence 89999999999999999998754
No 203
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.73 E-value=5.4e-17 Score=187.46 Aligned_cols=161 Identities=21% Similarity=0.300 Sum_probs=118.3
Q ss_pred cCCcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEE--EeC-CCCCeEEEEeCccccchhhhccCCChhhH
Q 005504 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTE--FTG-PEGQKFRLIDTAGIRKRAAIASSGSTTEA 445 (693)
Q Consensus 369 ~~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~--~~~-~~g~~i~liDTpG~~~~~~~~~~~~~~e~ 445 (693)
.+.++|+++|++|+|||||+++|.+.... .....|+|.+..... +.. ..+..+.||||||+..|..
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~-~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~---------- 310 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIA-QKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSS---------- 310 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCc-cccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHH----------
Confidence 45689999999999999999999876433 344567776543332 221 1357899999999966532
Q ss_pred hHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHHHHHHHH--Hh-c-C
Q 005504 446 LSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREK--LR-A-L 521 (693)
Q Consensus 446 ~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~--l~-~-~ 521 (693)
...+++..+|++|+|+|+.++...+....+..+...++|+|+|+||+|+..... ..+.+.+... +. . .
T Consensus 311 ----mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~----e~v~~eL~~~~ll~e~~g 382 (742)
T CHL00189 311 ----MRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANT----ERIKQQLAKYNLIPEKWG 382 (742)
T ss_pred ----HHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCH----HHHHHHHHHhccchHhhC
Confidence 223467899999999999999989998888888889999999999999965321 1222222211 11 1 1
Q ss_pred CCCcEEEeccccCCCHHHHHHHHHHHH
Q 005504 522 DWAPIVYSTAIAGQSVDKIIVAAEMVD 548 (693)
Q Consensus 522 ~~~piv~iSA~~g~gv~~L~~~i~~~~ 548 (693)
+..|++++||++|.|+++|++.+....
T Consensus 383 ~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 383 GDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred CCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 247899999999999999999987653
No 204
>PLN03126 Elongation factor Tu; Provisional
Probab=99.73 E-value=8.7e-17 Score=179.30 Aligned_cols=152 Identities=20% Similarity=0.244 Sum_probs=120.0
Q ss_pred cCCcEEEeecCCCCChhhHHHHHhcCCCc---------------eecCCCCcccceEEEEEeCCCCCeEEEEeCccccch
Q 005504 369 NRIPAIAIVGRPNVGKSSILNALVGEDRT---------------IVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKR 433 (693)
Q Consensus 369 ~~~~~I~ivG~~n~GKSSLin~llg~~~~---------------~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~ 433 (693)
.+.++|+++|++|+|||||+++|++.... .-....|+|++.....+.. ++..+.+|||||+.++
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~~~~i~liDtPGh~~f 157 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYET-ENRHYAHVDCPGHADY 157 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEec-CCcEEEEEECCCHHHH
Confidence 44589999999999999999999963211 1122358898888777774 7789999999999764
Q ss_pred hhhccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCc-EEEEEeccCCCCCcchhhHHHHHH
Q 005504 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKG-CLIVVNKWDTIPNKNQQTATYYEQ 512 (693)
Q Consensus 434 ~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p-~Ivv~NK~Dl~~~~~~~~~~~~~~ 512 (693)
+..+...+..+|++++|+|+..+...+..+++..+...++| +|+++||||++..+ ...+.+.+
T Consensus 158 --------------~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~--~~~~~i~~ 221 (478)
T PLN03126 158 --------------VKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDE--ELLELVEL 221 (478)
T ss_pred --------------HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHH--HHHHHHHH
Confidence 33567778899999999999999999999999999999999 78899999997532 33455566
Q ss_pred HHHHHHhcC----CCCcEEEeccccCCCH
Q 005504 513 DVREKLRAL----DWAPIVYSTAIAGQSV 537 (693)
Q Consensus 513 ~i~~~l~~~----~~~piv~iSA~~g~gv 537 (693)
++...+..+ ..+|++++||.+|.++
T Consensus 222 ~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 222 EVRELLSSYEFPGDDIPIISGSALLALEA 250 (478)
T ss_pred HHHHHHHhcCCCcCcceEEEEEccccccc
Confidence 777777654 2579999999998654
No 205
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.72 E-value=6.8e-17 Score=156.86 Aligned_cols=155 Identities=15% Similarity=0.168 Sum_probs=103.4
Q ss_pred EEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCC--eEEEEeCccccchhhhccCCChhhHhHHHHH
Q 005504 374 IAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (693)
Q Consensus 374 I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~--~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (693)
|+++|.+|||||||++++++.... ..+..+..+.....+.. ++. .+.+|||||+.+...+.
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~-------------- 63 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFP--EDYVPTVFENYSADVEV-DGKPVELGLWDTAGQEDYDRLR-------------- 63 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCC--CCCCCcEEeeeeEEEEE-CCEEEEEEEEECCCCcccchhc--------------
Confidence 589999999999999999976432 22222333333333333 333 58999999986643221
Q ss_pred HHHHhcCCeEEEEecccccCCHHHH--HHHHHHHHh--CCcEEEEEeccCCCCCcchhhHHHH---------HHHHHHHH
Q 005504 452 FRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYY---------EQDVREKL 518 (693)
Q Consensus 452 ~~~i~~aDvvllViDa~~~~~~~d~--~~~~~l~~~--~~p~Ivv~NK~Dl~~~~~~~~~~~~---------~~~i~~~l 518 (693)
...++.+|++|+|+|.++..+.++. .|+..+... ++|+|+|+||+|+..... ....+ .++..+..
T Consensus 64 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~v~~~~~~~~~ 141 (174)
T smart00174 64 PLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKS--TLRELSKQKQEPVTYEQGEALA 141 (174)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChh--hhhhhhcccCCCccHHHHHHHH
Confidence 1246889999999999887555554 366666654 799999999999965221 00000 11122223
Q ss_pred hcCCCCcEEEeccccCCCHHHHHHHHHHH
Q 005504 519 RALDWAPIVYSTAIAGQSVDKIIVAAEMV 547 (693)
Q Consensus 519 ~~~~~~piv~iSA~~g~gv~~L~~~i~~~ 547 (693)
...+..+++++||++|.|++++|+.+.+.
T Consensus 142 ~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~ 170 (174)
T smart00174 142 KRIGAVKYLECSALTQEGVREVFEEAIRA 170 (174)
T ss_pred HHcCCcEEEEecCCCCCCHHHHHHHHHHH
Confidence 33333589999999999999999998765
No 206
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.72 E-value=4.8e-17 Score=157.88 Aligned_cols=157 Identities=17% Similarity=0.199 Sum_probs=103.6
Q ss_pred CCcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEE-EEEeCCCC--CeEEEEeCccccchhhhccCCChhhHh
Q 005504 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAID-TEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEAL 446 (693)
Q Consensus 370 ~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~-~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~e~~ 446 (693)
+.+||+++|.+|||||||++++++.... +..+.+|+..... ..+.. +| ..+.+|||+|..++....
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~~T~~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~~~~--------- 71 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFS-LNAYSPTIKPRYAVNTVEV-YGQEKYLILREVGEDEVAILLN--------- 71 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCC-cccCCCccCcceEEEEEEE-CCeEEEEEEEecCCcccccccc---------
Confidence 4589999999999999999999986532 2445555543322 23333 34 368899999986643221
Q ss_pred HHHHHHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHH-hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005504 447 SVNRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ-EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (693)
Q Consensus 447 ~~~~~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~-~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~ 524 (693)
..+++.+|++++|+|++++.+.+.. .|+..+.. .++|+++|+||+|+.+...... . ..+.+.+. .+..
T Consensus 72 -----~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~-~-~~~~~~~~---~~~~ 141 (169)
T cd01892 72 -----DAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYE-V-QPDEFCRK---LGLP 141 (169)
T ss_pred -----hhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccc-c-CHHHHHHH---cCCC
Confidence 2246899999999999886443332 34444322 3789999999999864322110 0 01122222 2223
Q ss_pred cEEEeccccCCCHHHHHHHHHHH
Q 005504 525 PIVYSTAIAGQSVDKIIVAAEMV 547 (693)
Q Consensus 525 piv~iSA~~g~gv~~L~~~i~~~ 547 (693)
+++++||++|.|++++|+.+.+.
T Consensus 142 ~~~~~Sa~~~~~v~~lf~~l~~~ 164 (169)
T cd01892 142 PPLHFSSKLGDSSNELFTKLATA 164 (169)
T ss_pred CCEEEEeccCccHHHHHHHHHHH
Confidence 56899999999999999998765
No 207
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.72 E-value=9.3e-17 Score=157.80 Aligned_cols=157 Identities=17% Similarity=0.159 Sum_probs=106.7
Q ss_pred CcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCC--CeEEEEeCccccchhhhccCCChhhHhHH
Q 005504 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (693)
Q Consensus 371 ~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (693)
..||+++|.+|||||||++++++... ...+..|..+.....+.. ++ ..+.+|||+|..++..+.
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f--~~~~~pT~~~~~~~~~~~-~~~~~~l~iwDtaG~e~~~~~~----------- 70 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCF--PENYVPTVFENYTASFEI-DTQRIELSLWDTSGSPYYDNVR----------- 70 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCC--CCccCCceeeeeEEEEEE-CCEEEEEEEEECCCchhhHhhh-----------
Confidence 47999999999999999999997542 122322332322223332 33 378999999986653321
Q ss_pred HHHHHHHhcCCeEEEEecccccCCHHHH--HHHHHHHHh--CCcEEEEEeccCCCCCc----------chhhHHHHHHHH
Q 005504 449 NRAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNK----------NQQTATYYEQDV 514 (693)
Q Consensus 449 ~~~~~~i~~aDvvllViDa~~~~~~~d~--~~~~~l~~~--~~p~Ivv~NK~Dl~~~~----------~~~~~~~~~~~i 514 (693)
..+++.+|++|+|+|.++..+.+.. .|+..+.+. +.|+|+|+||+||.... ..... .++.
T Consensus 71 ---~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~---~~~~ 144 (182)
T cd04172 71 ---PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVS---YDQG 144 (182)
T ss_pred ---hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCC---HHHH
Confidence 1257899999999999998777764 577777653 68999999999985310 00010 1122
Q ss_pred HHHHhcCCCCcEEEeccccCCC-HHHHHHHHHHH
Q 005504 515 REKLRALDWAPIVYSTAIAGQS-VDKIIVAAEMV 547 (693)
Q Consensus 515 ~~~l~~~~~~piv~iSA~~g~g-v~~L~~~i~~~ 547 (693)
.+.....+..+++++||++|.| |+++|..+.++
T Consensus 145 ~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 145 ANMAKQIGAATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred HHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHH
Confidence 2222333335899999999998 99999988774
No 208
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.72 E-value=9.4e-17 Score=154.33 Aligned_cols=153 Identities=16% Similarity=0.091 Sum_probs=103.1
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (693)
+|+++|.+|||||||++++++... .....+....+........++ ..+.+|||||...+.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------------- 63 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGY-EPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQ----------------- 63 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhh-----------------
Confidence 699999999999999999997652 111122211222222233444 467899999985421
Q ss_pred CCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH-HHHHHHHhhcCCCcEEEEecccCCccchhh
Q 005504 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRKGIM 321 (693)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~-~i~~~L~~~~~~~p~ivv~NK~D~~~~~~~ 321 (693)
.....+++.+|++|+|+|.+++.+..+. .+.+.+++...+.|+++|+||+|+......
T Consensus 64 ---------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~~~ 122 (161)
T cd04124 64 ---------------------TMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSVTQ 122 (161)
T ss_pred ---------------------hhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhHHH
Confidence 2334677899999999999876554432 344555544347899999999998543221
Q ss_pred hHHHH-HhcCCCCccccccCCCCHHHHHHHHHhhcc
Q 005504 322 QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (693)
Q Consensus 322 ~~~~~-~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l~ 356 (693)
....+ ...+.+++++||++|.|++++++.+.+.+.
T Consensus 123 ~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 158 (161)
T cd04124 123 KKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAV 158 (161)
T ss_pred HHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 22222 234567899999999999999999987654
No 209
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.72 E-value=9.9e-17 Score=153.82 Aligned_cols=152 Identities=15% Similarity=0.119 Sum_probs=105.0
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (693)
.+|+++|.+|||||||++++++.. .+..+.+++.+.......+++ ..+.+|||||.....
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------------- 64 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSY--FVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFS---------------- 64 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCC--CCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchh----------------
Confidence 479999999999999999999764 344555555554444455666 458899999986421
Q ss_pred cCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH-HHHHHHHh--hcCCCcEEEEecccCCccc
Q 005504 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRK--NYMDKFIILAVNKCESPRK 318 (693)
Q Consensus 242 ~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~-~i~~~L~~--~~~~~p~ivv~NK~D~~~~ 318 (693)
.....++..+|++++|+|+.+.-+.... .+...+.+ ...+.|+++|+||+|+..+
T Consensus 65 ----------------------~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~ 122 (164)
T cd04145 65 ----------------------AMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQ 122 (164)
T ss_pred ----------------------HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccccc
Confidence 2233567889999999999875433221 12222222 1246799999999998653
Q ss_pred hh---hhHHHH-HhcCCCCccccccCCCCHHHHHHHHHhhc
Q 005504 319 GI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (693)
Q Consensus 319 ~~---~~~~~~-~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l 355 (693)
.. .....+ ...++.++++||.+|.|++++++.|.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 123 RKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred ceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 21 111222 23567889999999999999999998765
No 210
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.72 E-value=7.2e-17 Score=164.75 Aligned_cols=156 Identities=23% Similarity=0.222 Sum_probs=115.1
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCC
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (693)
+|+++|.||+|||||+|+|+|.. ..+..++++|.++..+.+.+++..+.+|||||+.+......
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~-~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~--------------- 65 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK-SEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGK--------------- 65 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-ccccCCCCccccceEEEEEECCeEEEEEECCCcccccccch---------------
Confidence 68999999999999999999986 55788999999999999999999999999999865321111
Q ss_pred CCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHH---------------------------
Q 005504 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWL--------------------------- 297 (693)
Q Consensus 245 g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L--------------------------- 297 (693)
.+..++...++++|++++|+|+.+... +-..+.+.|
T Consensus 66 ----------------~~~~~~l~~~~~ad~il~V~D~t~~~~-~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~ 128 (233)
T cd01896 66 ----------------GRGRQVIAVARTADLILMVLDATKPEG-HREILERELEGVGIRLNKRPPNITIKKKKKGGINIT 128 (233)
T ss_pred ----------------hHHHHHHHhhccCCEEEEEecCCcchh-HHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEe
Confidence 122455677899999999999875332 111122222
Q ss_pred -----------------Hh-------------------------hcCCCcEEEEecccCCccchhhhHHHHHhcCCCCcc
Q 005504 298 -----------------RK-------------------------NYMDKFIILAVNKCESPRKGIMQVSEFWSLGFSPLP 335 (693)
Q Consensus 298 -----------------~~-------------------------~~~~~p~ivv~NK~D~~~~~~~~~~~~~~~g~~~v~ 335 (693)
++ +....|+++|+||+|+....... .+ .....+++
T Consensus 129 ~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~--~~-~~~~~~~~ 205 (233)
T cd01896 129 STVPLTKLDEKTIKAILREYKIHNADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELD--LL-ARQPNSVV 205 (233)
T ss_pred ccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCCCHHHHH--HH-hcCCCEEE
Confidence 11 11236899999999987643222 22 22346899
Q ss_pred ccccCCCCHHHHHHHHHhhcc
Q 005504 336 ISAISGTGTGELLDLVCSELK 356 (693)
Q Consensus 336 iSA~~g~gi~~Ll~~i~~~l~ 356 (693)
+||.+|.|+++|++.|.+.+.
T Consensus 206 ~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 206 ISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred EcCCCCCCHHHHHHHHHHHhC
Confidence 999999999999999998765
No 211
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.72 E-value=1e-16 Score=156.61 Aligned_cols=156 Identities=19% Similarity=0.196 Sum_probs=107.1
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCC--CeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
+||+++|.+|||||||+.+++.... ...+..|..+.....+.. ++ ..+.+|||+|+.++..+.
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f--~~~~~~Ti~~~~~~~~~~-~~~~v~l~i~Dt~G~~~~~~~~------------ 66 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVSV-DGNTVNLGLWDTAGQEDYNRLR------------ 66 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCC--CCCCCCcceeeeEEEEEE-CCEEEEEEEEECCCCccccccc------------
Confidence 5899999999999999999996542 222222333333333332 33 478999999998764432
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHH--HHHHHHHH--hCCcEEEEEeccCCCCCcc--------hhhHHHHHHHHHHH
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQ--EGKGCLIVVNKWDTIPNKN--------QQTATYYEQDVREK 517 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~--~~~~~l~~--~~~p~Ivv~NK~Dl~~~~~--------~~~~~~~~~~i~~~ 517 (693)
..+++.+|++|+|+|.++..+.+.. .|+..+.. .+.|+|+|+||+|+.+... .... .++..+.
T Consensus 67 --~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~---~~~~~~~ 141 (176)
T cd04133 67 --PLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPIT---TAQGEEL 141 (176)
T ss_pred --hhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCC---HHHHHHH
Confidence 1257899999999999988887775 47777764 3689999999999954321 0011 1112222
Q ss_pred HhcCCCCcEEEeccccCCCHHHHHHHHHHH
Q 005504 518 LRALDWAPIVYSTAIAGQSVDKIIVAAEMV 547 (693)
Q Consensus 518 l~~~~~~piv~iSA~~g~gv~~L~~~i~~~ 547 (693)
....+..+++++||++|.||+++|+.+.+.
T Consensus 142 a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~ 171 (176)
T cd04133 142 RKQIGAAAYIECSSKTQQNVKAVFDAAIKV 171 (176)
T ss_pred HHHcCCCEEEECCCCcccCHHHHHHHHHHH
Confidence 222222369999999999999999998764
No 212
>PTZ00369 Ras-like protein; Provisional
Probab=99.72 E-value=9.5e-17 Score=158.66 Aligned_cols=155 Identities=17% Similarity=0.164 Sum_probs=103.7
Q ss_pred CcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCC--CeEEEEeCccccchhhhccCCChhhHhHH
Q 005504 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (693)
Q Consensus 371 ~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (693)
.+||+++|.+|||||||++++++.... ..+..|+.+.....+.. ++ ..+.+|||||+.++..++
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~--~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~l~----------- 70 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFI--DEYDPTIEDSYRKQCVI-DEETCLLDILDTAGQEEYSAMR----------- 70 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC--cCcCCchhhEEEEEEEE-CCEEEEEEEEeCCCCccchhhH-----------
Confidence 379999999999999999999975432 22333333333333333 33 357789999987753321
Q ss_pred HHHHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHH----hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005504 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (693)
Q Consensus 449 ~~~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~----~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~ 523 (693)
..+++.+|++++|+|+++..+.++. .|...+.+ .+.|+++|+||+|+....... ..+ ...+.+. . .
T Consensus 71 ---~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~-~~~-~~~~~~~---~-~ 141 (189)
T PTZ00369 71 ---DQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVS-TGE-GQELAKS---F-G 141 (189)
T ss_pred ---HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccC-HHH-HHHHHHH---h-C
Confidence 2256899999999999887554443 34444443 267999999999985432211 111 1112121 1 3
Q ss_pred CcEEEeccccCCCHHHHHHHHHHHH
Q 005504 524 APIVYSTAIAGQSVDKIIVAAEMVD 548 (693)
Q Consensus 524 ~piv~iSA~~g~gv~~L~~~i~~~~ 548 (693)
.+++++||++|.|++++|..+.+..
T Consensus 142 ~~~~e~Sak~~~gi~~~~~~l~~~l 166 (189)
T PTZ00369 142 IPFLETSAKQRVNVDEAFYELVREI 166 (189)
T ss_pred CEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999997653
No 213
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.72 E-value=1.2e-16 Score=157.75 Aligned_cols=155 Identities=19% Similarity=0.122 Sum_probs=102.7
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCC--CeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
++|+++|.+|||||||++++++..... ...+..+.+.....+.. ++ ..+.+|||||..++..
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~g~~~~~~-------------- 64 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSE-STKSTIGVDFKIKTVYI-ENKIIKLQIWDTNGQERFRS-------------- 64 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEE-CCEEEEEEEEECCCcHHHHh--------------
Confidence 489999999999999999999765322 12222222322223332 23 3678999999765422
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHHh---CCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCc
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~~---~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~p 525 (693)
.....++.+|++++|+|++++.+.... .|+..+... +.|+++|+||+|+.+...... ..... +....+.+
T Consensus 65 ~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~--~~~~~----~~~~~~~~ 138 (188)
T cd04125 65 LNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDS--NIAKS----FCDSLNIP 138 (188)
T ss_pred hHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCH--HHHHH----HHHHcCCe
Confidence 123367899999999999886554443 355555542 579999999999875332111 11111 11112458
Q ss_pred EEEeccccCCCHHHHHHHHHHHH
Q 005504 526 IVYSTAIAGQSVDKIIVAAEMVD 548 (693)
Q Consensus 526 iv~iSA~~g~gv~~L~~~i~~~~ 548 (693)
++++||++|.|++++|+.+.+..
T Consensus 139 ~~evSa~~~~~i~~~f~~l~~~~ 161 (188)
T cd04125 139 FFETSAKQSINVEEAFILLVKLI 161 (188)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999987664
No 214
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.72 E-value=5.9e-17 Score=181.40 Aligned_cols=157 Identities=21% Similarity=0.216 Sum_probs=115.7
Q ss_pred cCCcEEEeecCCCCChhhHHHHHhcCCCceecC--------------------------------CCCcccceEEEEEeC
Q 005504 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSP--------------------------------ISGTTRDAIDTEFTG 416 (693)
Q Consensus 369 ~~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~--------------------------------~~gtT~d~~~~~~~~ 416 (693)
...++|+++|++|+|||||+++|+.....+... ..|+|++.....+..
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 445899999999999999999999665443221 125667776666664
Q ss_pred CCCCeEEEEeCccccchhhhccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhC-CcEEEEEec
Q 005504 417 PEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEG-KGCLIVVNK 495 (693)
Q Consensus 417 ~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~-~p~Ivv~NK 495 (693)
++..+.||||||+.++ ...+...+..+|++++|+|+..++..++...+..+...+ +|+|+|+||
T Consensus 105 -~~~~i~~iDTPGh~~f--------------~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNK 169 (474)
T PRK05124 105 -EKRKFIIADTPGHEQY--------------TRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNK 169 (474)
T ss_pred -CCcEEEEEECCCcHHH--------------HHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEe
Confidence 6779999999998654 223455679999999999999998888777776666666 478999999
Q ss_pred cCCCCCcchhhHHHHHHHHHHHHhc---CCCCcEEEeccccCCCHHHHH
Q 005504 496 WDTIPNKNQQTATYYEQDVREKLRA---LDWAPIVYSTAIAGQSVDKII 541 (693)
Q Consensus 496 ~Dl~~~~~~~~~~~~~~~i~~~l~~---~~~~piv~iSA~~g~gv~~L~ 541 (693)
||+.... .....++.+++...+.. ....+++++||++|.|++++-
T Consensus 170 iD~~~~~-~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 170 MDLVDYS-EEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred eccccch-hHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 9997432 23344455555544433 235889999999999998654
No 215
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.72 E-value=1.5e-16 Score=152.31 Aligned_cols=155 Identities=21% Similarity=0.189 Sum_probs=104.1
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCC-CCCeEEEEeCccccchhhhccCCChhhHhHHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (693)
+||+++|.+|||||||++++++... +..+.+++.+......... .+..+.+|||||+.++.. .
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------------~ 64 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAA--------------I 64 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--ccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhH--------------H
Confidence 4899999999999999999996542 3455566665554444431 234799999999865422 1
Q ss_pred HHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHH----hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCc
Q 005504 451 AFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (693)
Q Consensus 451 ~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~----~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~p 525 (693)
....++.+|++++|+|..++.+.... .++..+.. .++|+++|+||+|+....... .. ......... +.|
T Consensus 65 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~-~~----~~~~~~~~~-~~~ 138 (164)
T cd04139 65 RDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVS-SE----EAANLARQW-GVP 138 (164)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccC-HH----HHHHHHHHh-CCe
Confidence 23367889999999998765433222 23333333 479999999999996521111 11 111122222 368
Q ss_pred EEEeccccCCCHHHHHHHHHHHH
Q 005504 526 IVYSTAIAGQSVDKIIVAAEMVD 548 (693)
Q Consensus 526 iv~iSA~~g~gv~~L~~~i~~~~ 548 (693)
++++||++|.|++++++.+.+.+
T Consensus 139 ~~~~Sa~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 139 YVETSAKTRQNVEKAFYDLVREI 161 (164)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999987543
No 216
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.72 E-value=1.1e-16 Score=159.68 Aligned_cols=156 Identities=21% Similarity=0.180 Sum_probs=105.7
Q ss_pred CcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCC--CeEEEEeCccccchhhhccCCChhhHhHH
Q 005504 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (693)
Q Consensus 371 ~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (693)
.++|+++|.+|||||||++++++.... ....+..+.+.....+.. ++ ..+.+|||||+.++..+
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~-~~~~~~l~l~D~~G~~~~~~~------------ 71 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEI-NGERVKLQIWDTAGQERFRTI------------ 71 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCC-CCcCccccceeEEEEEEE-CCEEEEEEEEeCCCchhHHHH------------
Confidence 479999999999999999999976421 222232233333333332 23 36889999998664322
Q ss_pred HHHHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHHh--CCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCc
Q 005504 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (693)
Q Consensus 449 ~~~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~~--~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~p 525 (693)
...+++.+|++++|+|+++..+.++. .|+..+... ..|+++|+||+|+.+..... . ....+..... ..+
T Consensus 72 --~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~-~----~~~~~~~~~~-~~~ 143 (199)
T cd04110 72 --TSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVE-T----EDAYKFAGQM-GIS 143 (199)
T ss_pred --HHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccC-H----HHHHHHHHHc-CCE
Confidence 23367889999999999887655543 355655543 57999999999997533211 1 1122222222 378
Q ss_pred EEEeccccCCCHHHHHHHHHHHH
Q 005504 526 IVYSTAIAGQSVDKIIVAAEMVD 548 (693)
Q Consensus 526 iv~iSA~~g~gv~~L~~~i~~~~ 548 (693)
++++||++|.|++++|+.+.+..
T Consensus 144 ~~e~Sa~~~~gi~~lf~~l~~~~ 166 (199)
T cd04110 144 LFETSAKENINVEEMFNCITELV 166 (199)
T ss_pred EEEEECCCCcCHHHHHHHHHHHH
Confidence 99999999999999999998764
No 217
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.72 E-value=6.4e-17 Score=160.94 Aligned_cols=165 Identities=19% Similarity=0.222 Sum_probs=119.8
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecC-CCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhcccC
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVD-EPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~-~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (693)
+|+++|++|+|||||+|+|+|.+.+.+.. .+++|++++.+...++|+.+.||||||+.+.......+.
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~----------- 70 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLS----------- 70 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHH-----------
Confidence 69999999999999999999987655443 568999999999999999999999999987443222222
Q ss_pred CCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcC---CCcEEEEecccCCccchh
Q 005504 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYM---DKFIILAVNKCESPRKGI 320 (693)
Q Consensus 244 ~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~---~~p~ivv~NK~D~~~~~~ 320 (693)
..+.+.+.......|++|||+|+.+ ++..+..+++++++.+. .+++++|+|++|......
T Consensus 71 ----------------~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~ 133 (196)
T cd01852 71 ----------------KEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGT 133 (196)
T ss_pred ----------------HHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCc
Confidence 2233333444466899999999987 89999999999977422 267899999999764321
Q ss_pred -h--------hHHH-HHhcCC------CCccccccCCCCHHHHHHHHHhhcccc
Q 005504 321 -M--------QVSE-FWSLGF------SPLPISAISGTGTGELLDLVCSELKKV 358 (693)
Q Consensus 321 -~--------~~~~-~~~~g~------~~v~iSA~~g~gi~~Ll~~i~~~l~~~ 358 (693)
. .... ....|- ...+ |+..+.++.+|++.|.+++++.
T Consensus 134 ~~~~~~~~~~~l~~l~~~c~~r~~~f~~~~~-~~~~~~q~~~Ll~~i~~~~~~~ 186 (196)
T cd01852 134 LEDYLENSCEALKRLLEKCGGRYVAFNNKAK-GEEQEQQVKELLAKVESMVKEN 186 (196)
T ss_pred HHHHHHhccHHHHHHHHHhCCeEEEEeCCCC-cchhHHHHHHHHHHHHHHHHhc
Confidence 0 1111 111222 2233 6788999999999999988853
No 218
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.72 E-value=3.7e-17 Score=190.12 Aligned_cols=154 Identities=21% Similarity=0.247 Sum_probs=113.1
Q ss_pred CCcEEEeecCCCCChhhHHHHHhcCCCceecC----------CCCc----------------------ccceEEEEEeCC
Q 005504 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSP----------ISGT----------------------TRDAIDTEFTGP 417 (693)
Q Consensus 370 ~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~----------~~gt----------------------T~d~~~~~~~~~ 417 (693)
..++|+++|++|+|||||+|+|+.....++.. ..|+ |++.....+..
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~- 101 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT- 101 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc-
Confidence 34789999999999999999999866555422 3444 44444445553
Q ss_pred CCCeEEEEeCccccchhhhccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhC-CcEEEEEecc
Q 005504 418 EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEG-KGCLIVVNKW 496 (693)
Q Consensus 418 ~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~-~p~Ivv~NK~ 496 (693)
++.++.|+||||+.++ ...+...+..+|++++|+|+..+...++...+..+...+ +++|+|+||+
T Consensus 102 ~~~~~~liDtPG~~~f--------------~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~ 167 (632)
T PRK05506 102 PKRKFIVADTPGHEQY--------------TRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKM 167 (632)
T ss_pred CCceEEEEECCChHHH--------------HHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEec
Confidence 6678999999998654 223445688999999999999998888888777777777 5688999999
Q ss_pred CCCCCcchhhHHHHHHHHHHHHhcCC--CCcEEEeccccCCCHHH
Q 005504 497 DTIPNKNQQTATYYEQDVREKLRALD--WAPIVYSTAIAGQSVDK 539 (693)
Q Consensus 497 Dl~~~~~~~~~~~~~~~i~~~l~~~~--~~piv~iSA~~g~gv~~ 539 (693)
|++... ....+++..++.+.+...+ ..+++++||++|.|+++
T Consensus 168 D~~~~~-~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 168 DLVDYD-QEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred ccccch-hHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 997522 2333445555555444333 36899999999999874
No 219
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.72 E-value=4.6e-17 Score=156.84 Aligned_cols=151 Identities=21% Similarity=0.253 Sum_probs=101.4
Q ss_pred eEEEEcCCCCChhhHHHHhhcCcee---eecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRA---IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~---~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (693)
+|+++|++|+|||||+|+|.+.... ........|.......+.+++..+.+|||||+...
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~----------------- 63 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESL----------------- 63 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhh-----------------
Confidence 4889999999999999999875321 11122244555555667788899999999998541
Q ss_pred cCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHH--HHHHHHHHh-hcCCCcEEEEecccCCccc
Q 005504 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRK-NYMDKFIILAVNKCESPRK 318 (693)
Q Consensus 242 ~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d--~~i~~~L~~-~~~~~p~ivv~NK~D~~~~ 318 (693)
.......++.+|+++||+|+...-+... ..+..+++. ...+.|+++|+||+|+...
T Consensus 64 ---------------------~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~ 122 (167)
T cd04160 64 ---------------------RSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA 122 (167)
T ss_pred ---------------------HHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC
Confidence 1234456788999999999876432211 122222221 1247899999999998653
Q ss_pred hh-hhHHHHHh--------cCCCCccccccCCCCHHHHHHHHHh
Q 005504 319 GI-MQVSEFWS--------LGFSPLPISAISGTGTGELLDLVCS 353 (693)
Q Consensus 319 ~~-~~~~~~~~--------~g~~~v~iSA~~g~gi~~Ll~~i~~ 353 (693)
.. .....+.. .+.+++++||++|.|+++++++|.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 123 LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred CCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence 21 11122221 1236899999999999999998864
No 220
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.72 E-value=1.5e-16 Score=151.81 Aligned_cols=152 Identities=18% Similarity=0.200 Sum_probs=103.0
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCe--eEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (693)
.+|+++|.+|||||||+|++++... ...+.+++.+.......+++. .+.+|||||....
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------------- 62 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY----------------- 62 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--cCCcCCcchheEEEEEEECCEEEEEEEEECCCCcch-----------------
Confidence 4799999999999999999998752 333444444444444556664 4778999997541
Q ss_pred cCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH-HHHHHHHhh--cCCCcEEEEecccCCccc
Q 005504 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESPRK 318 (693)
Q Consensus 242 ~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~-~i~~~L~~~--~~~~p~ivv~NK~D~~~~ 318 (693)
......+++.+|++++|+|..+..+..+. .+...+.+. ..+.|+++|+||+|+...
T Consensus 63 ---------------------~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~ 121 (162)
T cd04138 63 ---------------------SAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAAR 121 (162)
T ss_pred ---------------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 12334577889999999998864433322 122222221 247899999999998653
Q ss_pred hh--hhHHHH-HhcCCCCccccccCCCCHHHHHHHHHhhc
Q 005504 319 GI--MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (693)
Q Consensus 319 ~~--~~~~~~-~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l 355 (693)
.. .....+ ...+..++++||++|.|++++++.|.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 122 TVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred eecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence 21 111222 23566889999999999999999998654
No 221
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.72 E-value=1.6e-16 Score=156.10 Aligned_cols=152 Identities=18% Similarity=0.107 Sum_probs=97.3
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (693)
++|+++|.+|||||||++++........ .|.+..+. ..+.. ++..+.+|||||+.++.. ..
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~~~~~~~--~~T~~~~~--~~~~~-~~~~~~l~D~~G~~~~~~--------------~~ 78 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKLGEVVTT--IPTIGFNV--ETVEY-KNLKFTMWDVGGQDKLRP--------------LW 78 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcccc--CCccccce--EEEEE-CCEEEEEEECCCCHhHHH--------------HH
Confidence 7999999999999999999975433222 22222221 23333 567899999999865422 12
Q ss_pred HHHHhcCCeEEEEecccccCCHHHH-HHHHHH-HH---hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcC--CCC
Q 005504 452 FRAIRRSDVVALVIEAMACITEQDC-RIAERI-EQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRAL--DWA 524 (693)
Q Consensus 452 ~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l-~~---~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~--~~~ 524 (693)
..+++.+|++|+|+|+++..+..+. ..+..+ .. ..+|+++|+||.|+.+.... .++...+. +... ...
T Consensus 79 ~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~l~--~~~~~~~~~ 153 (182)
T PTZ00133 79 RHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMST---TEVTEKLG--LHSVRQRNW 153 (182)
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCH---HHHHHHhC--CCcccCCcE
Confidence 3467899999999999865322222 223323 22 35899999999998543221 12222211 1111 113
Q ss_pred cEEEeccccCCCHHHHHHHHHHH
Q 005504 525 PIVYSTAIAGQSVDKIIVAAEMV 547 (693)
Q Consensus 525 piv~iSA~~g~gv~~L~~~i~~~ 547 (693)
+++++||++|.|++++++++.+.
T Consensus 154 ~~~~~Sa~tg~gv~e~~~~l~~~ 176 (182)
T PTZ00133 154 YIQGCCATTAQGLYEGLDWLSAN 176 (182)
T ss_pred EEEeeeCCCCCCHHHHHHHHHHH
Confidence 56789999999999999998764
No 222
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.72 E-value=7.2e-17 Score=189.06 Aligned_cols=160 Identities=23% Similarity=0.301 Sum_probs=119.1
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhcccC
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (693)
.+|+++|+||||||||+|+|+|.+ ..+++.+|+|.+...+.+.+++..+.+|||||+.+........
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~-~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~------------ 70 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGAR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQT------------ 70 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccc------------
Confidence 579999999999999999999986 5789999999999999999999999999999998643211100
Q ss_pred CCCchhhHHHHHhcchHHHHHHHHHH--HHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCccchhh
Q 005504 244 EGIPLATREAAVARMPSMIERQATAA--IEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM 321 (693)
Q Consensus 244 ~g~~~~~~~~~~~~~~~~i~~~~~~~--i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~~~ 321 (693)
...+ +.+..+ ...+|++++|+|+++... +..+...+.+ .++|+++|+||+|..++...
T Consensus 71 -------------s~~E---~i~~~~l~~~~aD~vI~VvDat~ler--~l~l~~ql~e--~giPvIvVlNK~Dl~~~~~i 130 (772)
T PRK09554 71 -------------SLDE---QIACHYILSGDADLLINVVDASNLER--NLYLTLQLLE--LGIPCIVALNMLDIAEKQNI 130 (772)
T ss_pred -------------cHHH---HHHHHHHhccCCCEEEEEecCCcchh--hHHHHHHHHH--cCCCEEEEEEchhhhhccCc
Confidence 0011 112222 247999999999986422 3445555655 48999999999998643211
Q ss_pred --hHHHH-HhcCCCCccccccCCCCHHHHHHHHHhhcc
Q 005504 322 --QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (693)
Q Consensus 322 --~~~~~-~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l~ 356 (693)
....+ ..+|.+++++||.+|.|+++|.+.+.+..+
T Consensus 131 ~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 131 RIDIDALSARLGCPVIPLVSTRGRGIEALKLAIDRHQA 168 (772)
T ss_pred HHHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhhh
Confidence 11122 346888999999999999999999987653
No 223
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.72 E-value=8.2e-17 Score=156.59 Aligned_cols=149 Identities=20% Similarity=0.296 Sum_probs=101.8
Q ss_pred CCeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005504 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (693)
Q Consensus 163 ~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (693)
..+|+++|.+|||||||+++|.+.......++.| .....+.+++..+.+|||||....
T Consensus 14 ~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g----~~~~~~~~~~~~l~l~D~~G~~~~------------------ 71 (173)
T cd04154 14 EMRILILGLDNAGKTTILKKLLGEDIDTISPTLG----FQIKTLEYEGYKLNIWDVGGQKTL------------------ 71 (173)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccc----cceEEEEECCEEEEEEECCCCHHH------------------
Confidence 4689999999999999999999874322222222 233445667888999999998531
Q ss_pred CCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHH--HHHHHHHHh-hcCCCcEEEEecccCCccch
Q 005504 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRK-NYMDKFIILAVNKCESPRKG 319 (693)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d--~~i~~~L~~-~~~~~p~ivv~NK~D~~~~~ 319 (693)
......+++.+|++++|+|+....+... ..+..++.. ...+.|+++|+||+|+....
T Consensus 72 --------------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 131 (173)
T cd04154 72 --------------------RPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL 131 (173)
T ss_pred --------------------HHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC
Confidence 1233456788999999999987533222 223333322 22578999999999986532
Q ss_pred h-hhHHHHHh------cCCCCccccccCCCCHHHHHHHHHh
Q 005504 320 I-MQVSEFWS------LGFSPLPISAISGTGTGELLDLVCS 353 (693)
Q Consensus 320 ~-~~~~~~~~------~g~~~v~iSA~~g~gi~~Ll~~i~~ 353 (693)
. .....+.. .+++++++||++|.|++++++++.+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 132 SEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred CHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence 1 12222222 2346899999999999999998864
No 224
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.72 E-value=8.7e-17 Score=156.13 Aligned_cols=159 Identities=15% Similarity=0.149 Sum_probs=105.7
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCC--eEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~--~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
+||+++|.+|+|||||++++.+... ...+.+++.+.....+.. ++. .+.+|||||..++..+..
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~----------- 66 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTV-GGKQYLLGLYDTAGQEDYDRLRP----------- 66 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeEEEEEE-CCEEEEEEEEeCCCccccccccc-----------
Confidence 4899999999999999999997643 233334444443333433 333 477999999876543321
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHH--HHHHHHHH--hCCcEEEEEeccCCCCCcchhh-HH-----HH-HHHHHHHH
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQ--EGKGCLIVVNKWDTIPNKNQQT-AT-----YY-EQDVREKL 518 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~--~~~~~l~~--~~~p~Ivv~NK~Dl~~~~~~~~-~~-----~~-~~~i~~~l 518 (693)
..++.+|++++|+|..+..+.++. .|+..+.. .++|+++|+||+|+.+...... .. .+ .++.....
T Consensus 67 ---~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 143 (174)
T cd04135 67 ---LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLA 143 (174)
T ss_pred ---ccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHH
Confidence 146789999999999887655554 35555544 4799999999999864321100 00 00 11222333
Q ss_pred hcCCCCcEEEeccccCCCHHHHHHHHHHH
Q 005504 519 RALDWAPIVYSTAIAGQSVDKIIVAAEMV 547 (693)
Q Consensus 519 ~~~~~~piv~iSA~~g~gv~~L~~~i~~~ 547 (693)
...+..+++++||++|.|++++|+.+.+.
T Consensus 144 ~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~ 172 (174)
T cd04135 144 KEIGAHCYVECSALTQKGLKTVFDEAILA 172 (174)
T ss_pred HHcCCCEEEEecCCcCCCHHHHHHHHHHH
Confidence 34444679999999999999999988653
No 225
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.72 E-value=8e-17 Score=163.06 Aligned_cols=156 Identities=15% Similarity=0.108 Sum_probs=107.1
Q ss_pred CCcEEEeecCCCCChhhHHHHHhcCCC-ceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHH
Q 005504 370 RIPAIAIVGRPNVGKSSILNALVGEDR-TIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (693)
Q Consensus 370 ~~~~I~ivG~~n~GKSSLin~llg~~~-~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (693)
..+||+++|.+|||||||+++++.... ....+..|.+......... .....+.+|||||..++..+.
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~----------- 79 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLR----------- 79 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEEC-CeEEEEEEEECCCchhhhhhh-----------
Confidence 447999999999999999999875432 2334444444443332222 123589999999997754332
Q ss_pred HHHHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHH--hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCc
Q 005504 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ--EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (693)
Q Consensus 449 ~~~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~--~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~p 525 (693)
..+++.+|++|+|+|.++..+.+.. .|+..+.+ .+.|+++|+||+|+..... . .+ .+ .+......+
T Consensus 80 ---~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v-~-~~----~~--~~~~~~~~~ 148 (219)
T PLN03071 80 ---DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-K-AK----QV--TFHRKKNLQ 148 (219)
T ss_pred ---HHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccC-C-HH----HH--HHHHhcCCE
Confidence 1256899999999999987665554 36666654 3689999999999853211 1 11 11 112223578
Q ss_pred EEEeccccCCCHHHHHHHHHHHH
Q 005504 526 IVYSTAIAGQSVDKIIVAAEMVD 548 (693)
Q Consensus 526 iv~iSA~~g~gv~~L~~~i~~~~ 548 (693)
++++||++|.|++++|.++.+..
T Consensus 149 ~~e~SAk~~~~i~~~f~~l~~~~ 171 (219)
T PLN03071 149 YYEISAKSNYNFEKPFLYLARKL 171 (219)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999987553
No 226
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.72 E-value=1.4e-16 Score=158.66 Aligned_cols=155 Identities=19% Similarity=0.206 Sum_probs=103.8
Q ss_pred EEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCC--CeEEEEeCccccchhhhccCCChhhHhHHHH
Q 005504 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (693)
Q Consensus 373 ~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (693)
||+++|.+|||||||++++++.... ..+..|+.+.....+.. ++ ..+.+|||||+.++..+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~-------------- 63 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE--PKYRRTVEEMHRKEYEV-GGVSLTLDILDTSGSYSFPAM-------------- 63 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--ccCCCchhhheeEEEEE-CCEEEEEEEEECCCchhhhHH--------------
Confidence 5899999999999999999976432 33444444433334443 34 47889999998664221
Q ss_pred HHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHH----hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCc
Q 005504 451 AFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (693)
Q Consensus 451 ~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~----~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~p 525 (693)
...++..+|++|+|+|++++.+.++. .++..+.+ .++|+|+|+||+|+.......... ...+........+
T Consensus 64 ~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~----~~~~~~~~~~~~~ 139 (198)
T cd04147 64 RKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAK----DALSTVELDWNCG 139 (198)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHH----HHHHHHHhhcCCc
Confidence 11256899999999999886555443 23344433 479999999999986532211111 1111221112368
Q ss_pred EEEeccccCCCHHHHHHHHHHHH
Q 005504 526 IVYSTAIAGQSVDKIIVAAEMVD 548 (693)
Q Consensus 526 iv~iSA~~g~gv~~L~~~i~~~~ 548 (693)
++++||++|.|++++++++.+..
T Consensus 140 ~~~~Sa~~g~gv~~l~~~l~~~~ 162 (198)
T cd04147 140 FVETSAKDNENVLEVFKELLRQA 162 (198)
T ss_pred EEEecCCCCCCHHHHHHHHHHHh
Confidence 99999999999999999998653
No 227
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.72 E-value=5.8e-17 Score=156.54 Aligned_cols=159 Identities=16% Similarity=0.141 Sum_probs=103.8
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeC-CCCCeEEEEeCccccchhhhccCCChhhHhHHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTG-PEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~-~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (693)
+||+++|.+|||||||+|+|++.... .....+..+........ .....+.+|||||+.++....
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~------------- 65 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFP--TEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLR------------- 65 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccc-------------
Confidence 48999999999999999999987531 22222333333223322 123479999999987642221
Q ss_pred HHHHHhcCCeEEEEecccccCCHHHH--HHHHHHHHh--CCcEEEEEeccCCCCCcchhhH------HHHHHHHHHHHhc
Q 005504 451 AFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNKNQQTA------TYYEQDVREKLRA 520 (693)
Q Consensus 451 ~~~~i~~aDvvllViDa~~~~~~~d~--~~~~~l~~~--~~p~Ivv~NK~Dl~~~~~~~~~------~~~~~~i~~~l~~ 520 (693)
...++.+|++++|+|+++..+.... .|+..+... ++|+++|+||+|+......... .-..+...+....
T Consensus 66 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 144 (171)
T cd00157 66 -PLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKE 144 (171)
T ss_pred -hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHH
Confidence 1134789999999999875444332 355555544 5999999999999765422100 0001222333334
Q ss_pred CCCCcEEEeccccCCCHHHHHHHHHH
Q 005504 521 LDWAPIVYSTAIAGQSVDKIIVAAEM 546 (693)
Q Consensus 521 ~~~~piv~iSA~~g~gv~~L~~~i~~ 546 (693)
.+..+++++||++|.|++++++.+.+
T Consensus 145 ~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 145 IGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred hCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 44458999999999999999998864
No 228
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.72 E-value=1.2e-16 Score=155.40 Aligned_cols=157 Identities=15% Similarity=0.166 Sum_probs=106.3
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCC--CeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
+||+++|.+|+|||||++++++... ...+..|+.+.....+.. ++ ..+.+|||||+.++..+..
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~----------- 66 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGY--PTEYVPTAFDNFSVVVLV-DGKPVRLQLCDTAGQDEFDKLRP----------- 66 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeeEEEEE-CCEEEEEEEEECCCChhhccccc-----------
Confidence 4899999999999999999986532 344555665554444443 33 4688999999876533321
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHH--HHHHHHHH--hCCcEEEEEeccCCCCCcchhh------HHHH-HHHHHHHH
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQ--EGKGCLIVVNKWDTIPNKNQQT------ATYY-EQDVREKL 518 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~--~~~~~l~~--~~~p~Ivv~NK~Dl~~~~~~~~------~~~~-~~~i~~~l 518 (693)
.+++.+|++|+|+|.++..+.+.. .|+..+.. .++|+++|+||+|+........ ...+ .++.....
T Consensus 67 ---~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a 143 (173)
T cd04130 67 ---LCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALA 143 (173)
T ss_pred ---cccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHH
Confidence 156899999999999987665553 46766665 3689999999999864321000 0000 11122222
Q ss_pred hcCCCCcEEEeccccCCCHHHHHHHHH
Q 005504 519 RALDWAPIVYSTAIAGQSVDKIIVAAE 545 (693)
Q Consensus 519 ~~~~~~piv~iSA~~g~gv~~L~~~i~ 545 (693)
...+..+++++||++|.|++++|+.+.
T Consensus 144 ~~~~~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 144 EKIGACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred HHhCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 223334899999999999999998875
No 229
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.71 E-value=1.3e-16 Score=154.65 Aligned_cols=149 Identities=17% Similarity=0.095 Sum_probs=98.3
Q ss_pred EEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHHHH
Q 005504 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (693)
Q Consensus 373 ~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~~ 452 (693)
||+++|.+|||||||++++.+.... ...+ |.......+.. ++..+.+|||||+.++.. ...
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~--~~~~--T~~~~~~~~~~-~~~~i~l~Dt~G~~~~~~--------------~~~ 61 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM--QPIP--TIGFNVETVEY-KNLKFTIWDVGGKHKLRP--------------LWK 61 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC--CcCC--cCceeEEEEEE-CCEEEEEEECCCChhcch--------------HHH
Confidence 5899999999999999999986322 2222 33222223443 567899999999865422 123
Q ss_pred HHHhcCCeEEEEecccccCCHHH-HHHHHHHHH----hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCC-----
Q 005504 453 RAIRRSDVVALVIEAMACITEQD-CRIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD----- 522 (693)
Q Consensus 453 ~~i~~aDvvllViDa~~~~~~~d-~~~~~~l~~----~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~----- 522 (693)
.+++.+|++++|+|+++..+..+ ..++..+.. .+.|+++|+||+|+...... + ++.+.+....
T Consensus 62 ~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---~----~~~~~~~~~~~~~~~ 134 (169)
T cd04158 62 HYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSV---E----EMTELLSLHKLCCGR 134 (169)
T ss_pred HHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCH---H----HHHHHhCCccccCCC
Confidence 35789999999999987533322 234444432 24799999999999543221 1 1222222111
Q ss_pred CCcEEEeccccCCCHHHHHHHHHHH
Q 005504 523 WAPIVYSTAIAGQSVDKIIVAAEMV 547 (693)
Q Consensus 523 ~~piv~iSA~~g~gv~~L~~~i~~~ 547 (693)
..+++++||++|.|++++|+++.+.
T Consensus 135 ~~~~~~~Sa~~g~gv~~~f~~l~~~ 159 (169)
T cd04158 135 SWYIQGCDARSGMGLYEGLDWLSRQ 159 (169)
T ss_pred cEEEEeCcCCCCCCHHHHHHHHHHH
Confidence 1367889999999999999998754
No 230
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.71 E-value=1.4e-16 Score=181.37 Aligned_cols=162 Identities=19% Similarity=0.250 Sum_probs=110.7
Q ss_pred CCcEEEeecCCCCChhhHHHHHhcCCCceecCCCC-cccceEEEEE--eCC---------------CCCeEEEEeCcccc
Q 005504 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISG-TTRDAIDTEF--TGP---------------EGQKFRLIDTAGIR 431 (693)
Q Consensus 370 ~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~g-tT~d~~~~~~--~~~---------------~g~~i~liDTpG~~ 431 (693)
+++.|+++|++|+|||||+|+|.+... +...+| +|++.-...+ ... ....+.+|||||+.
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v--~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e 80 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAV--AKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHE 80 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccc--ccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcH
Confidence 457899999999999999999998743 233333 4443111111 100 01248999999997
Q ss_pred chhhhccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchh------
Q 005504 432 KRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQ------ 505 (693)
Q Consensus 432 ~~~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~------ 505 (693)
++..+ ..+.++.+|++++|+|++++...++...+..+...++|+|+|+||+|+.......
T Consensus 81 ~f~~l--------------~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~ 146 (590)
T TIGR00491 81 AFTNL--------------RKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFM 146 (590)
T ss_pred hHHHH--------------HHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHH
Confidence 65332 2235689999999999999999999988888888899999999999997422100
Q ss_pred ---------hHHHHH---HHHHHHHh--------------cCCCCcEEEeccccCCCHHHHHHHHHHH
Q 005504 506 ---------TATYYE---QDVREKLR--------------ALDWAPIVYSTAIAGQSVDKIIVAAEMV 547 (693)
Q Consensus 506 ---------~~~~~~---~~i~~~l~--------------~~~~~piv~iSA~~g~gv~~L~~~i~~~ 547 (693)
....+. ..+...+. ..+..+++++||++|.|+++|+.++...
T Consensus 147 e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l 214 (590)
T TIGR00491 147 ESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL 214 (590)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence 000000 00001111 2234799999999999999999988654
No 231
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.71 E-value=7.7e-17 Score=186.16 Aligned_cols=154 Identities=19% Similarity=0.307 Sum_probs=118.1
Q ss_pred CCCCeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEec----CeeEEEEecCCcccccCCchhhhhhhh
Q 005504 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG----EHEFMLVDTGGVLNVSKSQPNIMEDLA 236 (693)
Q Consensus 161 ~~~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~----~~~~~lvDTpG~~~~~~~~~~~~~~~~ 236 (693)
...|+|+|+||+|+|||||+++|++...+ ....+|+|.+.....+.+. +..+.+|||||+..+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~-~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F------------ 308 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIA-QKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAF------------ 308 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCc-cccCCccccccceEEEEEEecCCceEEEEEECCcHHHH------------
Confidence 35689999999999999999999987633 3455678877666555553 488999999998541
Q ss_pred hhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCc
Q 005504 237 ITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESP 316 (693)
Q Consensus 237 ~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~ 316 (693)
.....+++..+|++|+|+|+.+|..++..+.+..+.. .+.|+|+|+||+|+.
T Consensus 309 --------------------------~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~--~~iPiIVViNKiDl~ 360 (742)
T CHL00189 309 --------------------------SSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQA--ANVPIIVAINKIDKA 360 (742)
T ss_pred --------------------------HHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHh--cCceEEEEEECCCcc
Confidence 2334467889999999999999999988888888866 588999999999987
Q ss_pred cchhhhHH-HHH-------hcC--CCCccccccCCCCHHHHHHHHHhhc
Q 005504 317 RKGIMQVS-EFW-------SLG--FSPLPISAISGTGTGELLDLVCSEL 355 (693)
Q Consensus 317 ~~~~~~~~-~~~-------~~g--~~~v~iSA~~g~gi~~Ll~~i~~~l 355 (693)
........ ++. ..| .+++++||.+|.|+++|++.|....
T Consensus 361 ~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 361 NANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred ccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 53221111 111 122 4689999999999999999987654
No 232
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.71 E-value=9.2e-17 Score=162.15 Aligned_cols=152 Identities=19% Similarity=0.269 Sum_probs=106.2
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCC---------------CCcccceEEE--EEeCC-------CCCeEEEEeC
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPI---------------SGTTRDAIDT--EFTGP-------EGQKFRLIDT 427 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~---------------~gtT~d~~~~--~~~~~-------~g~~i~liDT 427 (693)
++|+++|+.++|||||+++|+.....+.... .|.|...... .+... .+..+.+|||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 4799999999999999999986543222111 2455544332 23211 1557899999
Q ss_pred ccccchhhhccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCC------
Q 005504 428 AGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPN------ 501 (693)
Q Consensus 428 pG~~~~~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~------ 501 (693)
||+.++. ..+..+++.+|++++|+|+.++.+.+...+++.+...++|+|+|+||+|+...
T Consensus 81 PG~~~f~--------------~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~~~e~~~~~ 146 (222)
T cd01885 81 PGHVDFS--------------SEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRLILELKLSP 146 (222)
T ss_pred CCccccH--------------HHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhhcCCH
Confidence 9997752 24566889999999999999999999999999988889999999999998521
Q ss_pred -cchhhHHHHHHHHHHHHhcC-------------CCCc----EEEeccccCCCH
Q 005504 502 -KNQQTATYYEQDVREKLRAL-------------DWAP----IVYSTAIAGQSV 537 (693)
Q Consensus 502 -~~~~~~~~~~~~i~~~l~~~-------------~~~p----iv~iSA~~g~gv 537 (693)
+......++.+++...+... ...| ++|.||+.|+++
T Consensus 147 ~~~~~~~~~ii~~~n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f 200 (222)
T cd01885 147 EEAYQRLARIIEQVNAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGF 200 (222)
T ss_pred HHHHHHHHHHHHHHhHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEe
Confidence 11122233333333332222 1235 999999999987
No 233
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.71 E-value=1.1e-16 Score=154.25 Aligned_cols=153 Identities=18% Similarity=0.230 Sum_probs=101.3
Q ss_pred EEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCC--eEEEEeCccccchhhhccCCChhhHhHHHH
Q 005504 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (693)
Q Consensus 373 ~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~--~i~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (693)
+|+++|.+|||||||++++++... ...+++++.......+.. ++. .+.+|||||+.+... ..
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~-------------~~ 64 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF--IGEYDPNLESLYSRQVTI-DGEQVSLEILDTAGQQQADT-------------EQ 64 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc--ccccCCChHHhceEEEEE-CCEEEEEEEEECCCCccccc-------------ch
Confidence 589999999999999999986432 344455543333333333 333 578999999864200 11
Q ss_pred HHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHH-----hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005504 451 AFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ-----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (693)
Q Consensus 451 ~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~-----~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~ 524 (693)
....++.+|++|+|+|++++.+.+.. .|+..+.. .++|+++|+||+|+........ + ...+..... +.
T Consensus 65 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~-~----~~~~~~~~~-~~ 138 (165)
T cd04146 65 LERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVST-E----EGEKLASEL-GC 138 (165)
T ss_pred HHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCH-H----HHHHHHHHc-CC
Confidence 23467899999999999887555543 24444443 3789999999999854322111 1 111111122 36
Q ss_pred cEEEeccccC-CCHHHHHHHHHHH
Q 005504 525 PIVYSTAIAG-QSVDKIIVAAEMV 547 (693)
Q Consensus 525 piv~iSA~~g-~gv~~L~~~i~~~ 547 (693)
+++++||++| .|++++|..+.+.
T Consensus 139 ~~~e~Sa~~~~~~v~~~f~~l~~~ 162 (165)
T cd04146 139 LFFEVSAAEDYDGVHSVFHELCRE 162 (165)
T ss_pred EEEEeCCCCCchhHHHHHHHHHHH
Confidence 8999999999 5999999988753
No 234
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.71 E-value=1.3e-16 Score=152.69 Aligned_cols=151 Identities=18% Similarity=0.201 Sum_probs=102.8
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEec----CeeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG----EHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~----~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~ 240 (693)
+|+++|.+|+|||||++++++... .....++.+.+.....+.+. ...+.+|||||....
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------------- 64 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIF-TKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEF---------------- 64 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHH----------------
Confidence 699999999999999999998652 22223444444433444444 357999999997531
Q ss_pred ccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH-HHHHHHHhhcCCCcEEEEecccCCccch
Q 005504 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRKG 319 (693)
Q Consensus 241 ~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~-~i~~~L~~~~~~~p~ivv~NK~D~~~~~ 319 (693)
......+++.+|++++|+|+.+..+.... .+...+++...+.|+++|+||+|+..+.
T Consensus 65 ----------------------~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 122 (162)
T cd04106 65 ----------------------DAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQA 122 (162)
T ss_pred ----------------------HHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhccccc
Confidence 12334667899999999998865433222 2222333333578999999999986532
Q ss_pred hh---hHHH-HHhcCCCCccccccCCCCHHHHHHHHHhh
Q 005504 320 IM---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSE 354 (693)
Q Consensus 320 ~~---~~~~-~~~~g~~~v~iSA~~g~gi~~Ll~~i~~~ 354 (693)
.. .... ...++++++++||++|.|++++++.|...
T Consensus 123 ~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 123 VITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred CCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 21 1122 23457788999999999999999998753
No 235
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.71 E-value=1.2e-16 Score=183.01 Aligned_cols=160 Identities=21% Similarity=0.227 Sum_probs=116.9
Q ss_pred CcEEEeecCCCCChhhHHHHHhcCCCce--------ec------CCCCcccceEEEEEeCC--CC--CeEEEEeCccccc
Q 005504 371 IPAIAIVGRPNVGKSSILNALVGEDRTI--------VS------PISGTTRDAIDTEFTGP--EG--QKFRLIDTAGIRK 432 (693)
Q Consensus 371 ~~~I~ivG~~n~GKSSLin~llg~~~~~--------v~------~~~gtT~d~~~~~~~~~--~g--~~i~liDTpG~~~ 432 (693)
.++|+++|++|+|||||+++|+.....+ +. ...|+|++.....+.+. ++ ..+.||||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4689999999999999999998653221 11 12378877655444321 23 4789999999987
Q ss_pred hhhhccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHHH
Q 005504 433 RAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQ 512 (693)
Q Consensus 433 ~~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~ 512 (693)
+.. .+.++++.||++|+|+|++++.+.++...+..+.+.++|+|+|+||+|+..... ....+
T Consensus 83 F~~--------------~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~----~~~~~ 144 (595)
T TIGR01393 83 FSY--------------EVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADP----ERVKK 144 (595)
T ss_pred HHH--------------HHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCH----HHHHH
Confidence 632 234578899999999999999988888776667778999999999999864321 22233
Q ss_pred HHHHHHhcCCCCcEEEeccccCCCHHHHHHHHHHHHH
Q 005504 513 DVREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVDK 549 (693)
Q Consensus 513 ~i~~~l~~~~~~piv~iSA~~g~gv~~L~~~i~~~~~ 549 (693)
++.+.+. +...+++++||++|.|+++|++.+.+...
T Consensus 145 el~~~lg-~~~~~vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 145 EIEEVIG-LDASEAILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred HHHHHhC-CCcceEEEeeccCCCCHHHHHHHHHHhCC
Confidence 4444332 22235899999999999999999987643
No 236
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.71 E-value=1.5e-16 Score=155.17 Aligned_cols=156 Identities=15% Similarity=0.149 Sum_probs=104.0
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCC--CeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
+||+++|.+|||||||+.++++... ...+..|..+.....+.. ++ ..+.+|||||..++..+.
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f--~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~------------ 66 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDRLR------------ 66 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CCcCCCcceeeeEEEEEE-CCEEEEEEEEECCCchhhhhhh------------
Confidence 5899999999999999999996532 223333333333323333 34 368899999987653322
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHH--HHHHHHHHh--CCcEEEEEeccCCCCCcchhhHHHH---------HHHHHH
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYY---------EQDVRE 516 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~--~~~~~l~~~--~~p~Ivv~NK~Dl~~~~~~~~~~~~---------~~~i~~ 516 (693)
..+++.+|++|+|+|.++..+.++. .|+..+... +.|+|+|+||+|+.+... ..+.+ .++..+
T Consensus 67 --~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~--~~~~~~~~~~~~v~~~~~~~ 142 (174)
T cd01871 67 --PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD--TIEKLKEKKLTPITYPQGLA 142 (174)
T ss_pred --hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChh--hHHHHhhccCCCCCHHHHHH
Confidence 1256899999999999987666664 365555443 689999999999954221 00000 111122
Q ss_pred HHhcCCCCcEEEeccccCCCHHHHHHHHHH
Q 005504 517 KLRALDWAPIVYSTAIAGQSVDKIIVAAEM 546 (693)
Q Consensus 517 ~l~~~~~~piv~iSA~~g~gv~~L~~~i~~ 546 (693)
.....+..+++++||++|.|++++|+.+.+
T Consensus 143 ~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 143 MAKEIGAVKYLECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred HHHHcCCcEEEEecccccCCHHHHHHHHHH
Confidence 222333458999999999999999998864
No 237
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.71 E-value=6.9e-17 Score=178.03 Aligned_cols=153 Identities=20% Similarity=0.242 Sum_probs=114.6
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceec--------------------------------CCCCcccceEEEEEeCCCC
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVS--------------------------------PISGTTRDAIDTEFTGPEG 419 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~--------------------------------~~~gtT~d~~~~~~~~~~g 419 (693)
.+|+++|++|+|||||+++|+.....+.. -..|+|++.....+.. ++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~-~~ 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST-DK 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc-CC
Confidence 47999999999999999999854332211 1127788888878775 77
Q ss_pred CeEEEEeCccccchhhhccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCC-cEEEEEeccCC
Q 005504 420 QKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGK-GCLIVVNKWDT 498 (693)
Q Consensus 420 ~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~-p~Ivv~NK~Dl 498 (693)
.++.||||||+.++. ..+...+..+|++++|+|+..+...|+.+.+..+...++ ++|+|+||||+
T Consensus 80 ~~~~liDtPGh~~f~--------------~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~ 145 (406)
T TIGR02034 80 RKFIVADTPGHEQYT--------------RNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDL 145 (406)
T ss_pred eEEEEEeCCCHHHHH--------------HHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEeccc
Confidence 899999999986642 234457889999999999999999998888887777766 48889999999
Q ss_pred CCCcchhhHHHHHHHHHHHHhcCC--CCcEEEeccccCCCHHHH
Q 005504 499 IPNKNQQTATYYEQDVREKLRALD--WAPIVYSTAIAGQSVDKI 540 (693)
Q Consensus 499 ~~~~~~~~~~~~~~~i~~~l~~~~--~~piv~iSA~~g~gv~~L 540 (693)
.... ....+++.+.+...+...+ ..+++++||++|.|++++
T Consensus 146 ~~~~-~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 146 VDYD-EEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR 188 (406)
T ss_pred ccch-HHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence 7532 2333444455544443332 468999999999998863
No 238
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.71 E-value=1.7e-16 Score=157.90 Aligned_cols=174 Identities=16% Similarity=0.212 Sum_probs=121.1
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecC-CCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSP-ISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~-~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (693)
++|+++|+||+|||||+|+|+|.+.+.+.. .+|+|++........ +|..+.||||||+.+..... ..+.......
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~viDTPG~~d~~~~~---~~~~~~i~~~ 76 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW-DGRRVNVIDTPGLFDTSVSP---EQLSKEIVRC 76 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE-CCeEEEEEECcCCCCccCCh---HHHHHHHHHH
Confidence 479999999999999999999988765553 567888877766664 78899999999998752210 1222222333
Q ss_pred HHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHh-C----CcEEEEEeccCCCCCcchhhH-HHHHHHHHHHHhcCCCC
Q 005504 451 AFRAIRRSDVVALVIEAMACITEQDCRIAERIEQE-G----KGCLIVVNKWDTIPNKNQQTA-TYYEQDVREKLRALDWA 524 (693)
Q Consensus 451 ~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~-~----~p~Ivv~NK~Dl~~~~~~~~~-~~~~~~i~~~l~~~~~~ 524 (693)
...+...+|++|+|+|+.+ ++..+..+++.+.+. | +++|+|+|++|.+........ ......++..+..++..
T Consensus 77 ~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r 155 (196)
T cd01852 77 LSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGR 155 (196)
T ss_pred HHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCe
Confidence 3334578899999999987 899999998888764 3 789999999998764321111 11113345555555432
Q ss_pred cEEEe----ccccCCCHHHHHHHHHHHHHH
Q 005504 525 PIVYS----TAIAGQSVDKIIVAAEMVDKE 550 (693)
Q Consensus 525 piv~i----SA~~g~gv~~L~~~i~~~~~~ 550 (693)
.+++- |+..+.++.+|++.|.+...+
T Consensus 156 ~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 156 YVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 22221 356788899999999887665
No 239
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.71 E-value=1.5e-16 Score=153.35 Aligned_cols=154 Identities=18% Similarity=0.164 Sum_probs=104.9
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (693)
.+|+++|.+|||||||++++++.+. .....++.+.+.....+..++ ..+.+|||||....
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----------------- 64 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTY-TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF----------------- 64 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhH-----------------
Confidence 4799999999999999999998752 223344555455545555665 36889999997531
Q ss_pred cCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH-HHHHHHHhhc-CCCcEEEEecccCCccch
Q 005504 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-MDKFIILAVNKCESPRKG 319 (693)
Q Consensus 242 ~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~-~i~~~L~~~~-~~~p~ivv~NK~D~~~~~ 319 (693)
.......++.+|++++|+|+++.-+.... .+...+++.. .+.|+++|+||+|+....
T Consensus 65 ---------------------~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~ 123 (166)
T cd01869 65 ---------------------RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKR 123 (166)
T ss_pred ---------------------HHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhccccc
Confidence 12334567889999999999864332221 2222222221 367999999999986532
Q ss_pred hh---hHHH-HHhcCCCCccccccCCCCHHHHHHHHHhhcc
Q 005504 320 IM---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (693)
Q Consensus 320 ~~---~~~~-~~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l~ 356 (693)
.. .... ....+.+++++||.+|.|++++++.|.+.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 124 VVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAREIK 164 (166)
T ss_pred CCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHHHHH
Confidence 21 1111 2235668999999999999999999987654
No 240
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.71 E-value=1.7e-16 Score=152.58 Aligned_cols=153 Identities=16% Similarity=0.177 Sum_probs=103.0
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCC--CeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
.+|+++|.+|||||||++++++.... ....+....+.....+.. ++ ..+.+|||||..++...
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~~------------- 65 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFH-SSHISTIGVDFKMKTIEV-DGIKVRIQIWDTAGQERYQTI------------- 65 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHhHHhh-------------
Confidence 37999999999999999999976432 222333333333334443 33 36789999998654221
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHHh---CCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCc
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~~---~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~p 525 (693)
...+++.+|++++|+|.++.-+.+.. .|+..+... +.|+++|+||+|+........ +....+ ......+
T Consensus 66 -~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~--~~~~~~----~~~~~~~ 138 (161)
T cd04117 66 -TKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGD--EQGNKL----AKEYGMD 138 (161)
T ss_pred -HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCH--HHHHHH----HHHcCCE
Confidence 22356899999999999886554443 355555443 579999999999965432211 111122 2222378
Q ss_pred EEEeccccCCCHHHHHHHHHH
Q 005504 526 IVYSTAIAGQSVDKIIVAAEM 546 (693)
Q Consensus 526 iv~iSA~~g~gv~~L~~~i~~ 546 (693)
++++||++|.|++++|..|.+
T Consensus 139 ~~e~Sa~~~~~v~~~f~~l~~ 159 (161)
T cd04117 139 FFETSACTNSNIKESFTRLTE 159 (161)
T ss_pred EEEEeCCCCCCHHHHHHHHHh
Confidence 999999999999999999875
No 241
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.71 E-value=7.4e-17 Score=154.84 Aligned_cols=144 Identities=19% Similarity=0.279 Sum_probs=98.6
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCC
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (693)
+|+++|++|||||||+|+|.|... . . . ....+.+.+. .+|||||+.... ..
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~-~-~---~-----~~~~v~~~~~--~~iDtpG~~~~~---~~-------------- 53 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT-L-A---R-----KTQAVEFNDK--GDIDTPGEYFSH---PR-------------- 53 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc-c-C---c-----cceEEEECCC--CcccCCccccCC---HH--------------
Confidence 699999999999999999998641 1 1 1 1122233333 269999986421 10
Q ss_pred CCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCccchhhhHH
Q 005504 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVS 324 (693)
Q Consensus 245 g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~~~~~~ 324 (693)
+.+....++..+|++|+|+|+..+.+.....+.+. ..++|+++++||+|+.........
T Consensus 54 -----------------~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~----~~~~~ii~v~nK~Dl~~~~~~~~~ 112 (158)
T PRK15467 54 -----------------WYHALITTLQDVDMLIYVHGANDPESRLPAGLLDI----GVSKRQIAVISKTDMPDADVAATR 112 (158)
T ss_pred -----------------HHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc----cCCCCeEEEEEccccCcccHHHHH
Confidence 11333456789999999999987755433333322 246799999999998654333322
Q ss_pred H-HHhcCC--CCccccccCCCCHHHHHHHHHhhcccc
Q 005504 325 E-FWSLGF--SPLPISAISGTGTGELLDLVCSELKKV 358 (693)
Q Consensus 325 ~-~~~~g~--~~v~iSA~~g~gi~~Ll~~i~~~l~~~ 358 (693)
+ +..+++ +++++||++|.|+++|++.+.+.+...
T Consensus 113 ~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~~ 149 (158)
T PRK15467 113 KLLLETGFEEPIFELNSHDPQSVQQLVDYLASLTKQE 149 (158)
T ss_pred HHHHHcCCCCCEEEEECCCccCHHHHHHHHHHhchhh
Confidence 3 234555 789999999999999999999887643
No 242
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.71 E-value=2.1e-16 Score=154.76 Aligned_cols=156 Identities=17% Similarity=0.147 Sum_probs=105.2
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCC--CeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
.||+++|.+|||||||++++.+... ...+..|..+.....+.. ++ ..+.+|||||..++..+.
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f--~~~~~~t~~~~~~~~~~~-~~~~~~l~iwDt~G~~~~~~~~------------ 66 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCY--PETYVPTVFENYTASFEI-DEQRIELSLWDTSGSPYYDNVR------------ 66 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC--CCCcCCceEEEEEEEEEE-CCEEEEEEEEECCCchhhhhcc------------
Confidence 5899999999999999999997642 122333332322223333 33 368899999987653322
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHH--HHHHHHHHh--CCcEEEEEeccCCCCCc----------chhhHHHHHHHHH
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNK----------NQQTATYYEQDVR 515 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~--~~~~~l~~~--~~p~Ivv~NK~Dl~~~~----------~~~~~~~~~~~i~ 515 (693)
..+++.+|++|+|+|.++..+.+.. .|+..+.+. +.|+|+|+||+||.+.. ..... .++..
T Consensus 67 --~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~---~~e~~ 141 (178)
T cd04131 67 --PLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVS---YEQGC 141 (178)
T ss_pred --hhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCC---HHHHH
Confidence 1257899999999999988777763 577777653 68999999999985310 00010 11222
Q ss_pred HHHhcCCCCcEEEeccccCCC-HHHHHHHHHHH
Q 005504 516 EKLRALDWAPIVYSTAIAGQS-VDKIIVAAEMV 547 (693)
Q Consensus 516 ~~l~~~~~~piv~iSA~~g~g-v~~L~~~i~~~ 547 (693)
+.....+..+++++||++|.| |+++|..+.++
T Consensus 142 ~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 142 AIAKQLGAEIYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred HHHHHhCCCEEEECccCcCCcCHHHHHHHHHHH
Confidence 222223324799999999995 99999998874
No 243
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.71 E-value=1.9e-16 Score=152.85 Aligned_cols=155 Identities=15% Similarity=0.129 Sum_probs=103.9
Q ss_pred CcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCC--CeEEEEeCccccchhhhccCCChhhHhHH
Q 005504 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (693)
Q Consensus 371 ~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (693)
..+|+++|.+|||||||++++++... .....++.+.+.....+.. ++ ..+.+|||||+.++..
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~------------- 71 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLF-PPGQGATIGVDFMIKTVEI-KGEKIKLQIWDTAGQERFRS------------- 71 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCCcHHHHH-------------
Confidence 47999999999999999999986432 1222333334444444443 44 3578999999855321
Q ss_pred HHHHHHHhcCCeEEEEecccccCCHHHH-HHHHHHH---HhCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005504 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIE---QEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (693)
Q Consensus 449 ~~~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~---~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~ 524 (693)
....+++.+|++++|+|++++.+.+.. .|+..+. ..+.|+++|+||+|+....... .... +.+......
T Consensus 72 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~--~~~~----~~~~~~~~~ 144 (169)
T cd04114 72 -ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVS--QQRA----EEFSDAQDM 144 (169)
T ss_pred -HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccC--HHHH----HHHHHHcCC
Confidence 123467899999999999876444332 3444443 3468999999999986433211 1122 223333346
Q ss_pred cEEEeccccCCCHHHHHHHHHHH
Q 005504 525 PIVYSTAIAGQSVDKIIVAAEMV 547 (693)
Q Consensus 525 piv~iSA~~g~gv~~L~~~i~~~ 547 (693)
+++++||++|.|++++++.+.+.
T Consensus 145 ~~~~~Sa~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 145 YYLETSAKESDNVEKLFLDLACR 167 (169)
T ss_pred eEEEeeCCCCCCHHHHHHHHHHH
Confidence 89999999999999999998753
No 244
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.71 E-value=2.2e-16 Score=154.07 Aligned_cols=155 Identities=16% Similarity=0.065 Sum_probs=99.3
Q ss_pred CcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHH
Q 005504 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (693)
Q Consensus 371 ~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (693)
..+|+++|.+|||||||++++..... ....|.+..+.. .+.. ++..+.+|||||+.++..+
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~--~~~~~t~~~~~~--~~~~-~~~~l~l~D~~G~~~~~~~-------------- 73 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGES--VTTIPTIGFNVE--TVTY-KNISFTVWDVGGQDKIRPL-------------- 73 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC--CCcCCccccceE--EEEE-CCEEEEEEECCCChhhHHH--------------
Confidence 37999999999999999999964332 223333333322 2332 5678999999998664222
Q ss_pred HHHHHhcCCeEEEEecccccCCHHH-HHHHHHHHH----hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCc
Q 005504 451 AFRAIRRSDVVALVIEAMACITEQD-CRIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (693)
Q Consensus 451 ~~~~i~~aDvvllViDa~~~~~~~d-~~~~~~l~~----~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~p 525 (693)
...+++.||++|+|+|+++..+..+ ..++..+.. .+.|++||+||+|+..... .+++.+.+.-.........
T Consensus 74 ~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~~~~~~~~~~~~~ 150 (175)
T smart00177 74 WRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMK---AAEITEKLGLHSIRDRNWY 150 (175)
T ss_pred HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCC---HHHHHHHhCccccCCCcEE
Confidence 2235799999999999987533222 234433322 2589999999999864322 1222222210000011234
Q ss_pred EEEeccccCCCHHHHHHHHHHH
Q 005504 526 IVYSTAIAGQSVDKIIVAAEMV 547 (693)
Q Consensus 526 iv~iSA~~g~gv~~L~~~i~~~ 547 (693)
++++||++|.|+++++++|.+.
T Consensus 151 ~~~~Sa~~g~gv~e~~~~l~~~ 172 (175)
T smart00177 151 IQPTCATSGDGLYEGLTWLSNN 172 (175)
T ss_pred EEEeeCCCCCCHHHHHHHHHHH
Confidence 6789999999999999998654
No 245
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.71 E-value=1.8e-16 Score=152.51 Aligned_cols=153 Identities=18% Similarity=0.188 Sum_probs=105.5
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCe--eEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (693)
.+|+++|.+|||||||++++.+.+. .....|.++.+.....+..++. .+.+|||||....
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----------------- 65 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEF-NLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERY----------------- 65 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHH-----------------
Confidence 5799999999999999999998763 3344555555555555666664 5889999997531
Q ss_pred cCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH-HHHHHHHhhc-CCCcEEEEecccCCccch
Q 005504 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-MDKFIILAVNKCESPRKG 319 (693)
Q Consensus 242 ~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~-~i~~~L~~~~-~~~p~ivv~NK~D~~~~~ 319 (693)
.......+..++++++|+|.++..+..+. .++..+++.. .+.|+++|+||+|+....
T Consensus 66 ---------------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~ 124 (165)
T cd01868 66 ---------------------RAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 124 (165)
T ss_pred ---------------------HHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence 12233567889999999999864443322 2223333322 258999999999986532
Q ss_pred hh---hHHHH-HhcCCCCccccccCCCCHHHHHHHHHhhc
Q 005504 320 IM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (693)
Q Consensus 320 ~~---~~~~~-~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l 355 (693)
.. ....+ ...+..++++||.+|.|++++++.|.+.+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 125 AVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred cCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 11 11122 23456789999999999999999998654
No 246
>PLN03110 Rab GTPase; Provisional
Probab=99.71 E-value=2.1e-16 Score=159.71 Aligned_cols=159 Identities=18% Similarity=0.136 Sum_probs=109.2
Q ss_pred CCcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCC-CCCeEEEEeCccccchhhhccCCChhhHhHH
Q 005504 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (693)
Q Consensus 370 ~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (693)
..+||+++|.+|||||||+++|++.... ....+....+.....+... ....+.||||||..++..+
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~-~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~------------ 77 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFC-LESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAI------------ 77 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHH------------
Confidence 4579999999999999999999976532 2223333344433444331 2247899999998664221
Q ss_pred HHHHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHH---hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005504 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (693)
Q Consensus 449 ~~~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~---~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~ 524 (693)
...+++.+|++|+|+|.++..+.+.. .|+..+.. .+.|+++|+||+|+....... .+.. ..+......
T Consensus 78 --~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~--~~~~----~~l~~~~~~ 149 (216)
T PLN03110 78 --TSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVA--EEDG----QALAEKEGL 149 (216)
T ss_pred --HHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCC--HHHH----HHHHHHcCC
Confidence 23367899999999999886665554 46666654 378999999999986433211 1111 222222357
Q ss_pred cEEEeccccCCCHHHHHHHHHHHHH
Q 005504 525 PIVYSTAIAGQSVDKIIVAAEMVDK 549 (693)
Q Consensus 525 piv~iSA~~g~gv~~L~~~i~~~~~ 549 (693)
+++++||++|.|++++|+.+.....
T Consensus 150 ~~~e~SA~~g~~v~~lf~~l~~~i~ 174 (216)
T PLN03110 150 SFLETSALEATNVEKAFQTILLEIY 174 (216)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999976543
No 247
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.71 E-value=2.3e-16 Score=155.28 Aligned_cols=150 Identities=15% Similarity=0.131 Sum_probs=100.4
Q ss_pred CcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHH
Q 005504 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (693)
Q Consensus 371 ~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (693)
..+|+++|.+|||||||+|++.+.....+.+ |.......+.. ++..+.+|||||+.+....
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~----t~~~~~~~~~~-~~~~~~~~D~~G~~~~~~~-------------- 77 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQHQP----TQHPTSEELAI-GNIKFTTFDLGGHQQARRL-------------- 77 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCcccCC----ccccceEEEEE-CCEEEEEEECCCCHHHHHH--------------
Confidence 3799999999999999999999875433322 22222233333 5678999999998654221
Q ss_pred HHHHHhcCCeEEEEecccccCCHHH-HHHHHHHHH----hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhc-----
Q 005504 451 AFRAIRRSDVVALVIEAMACITEQD-CRIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRA----- 520 (693)
Q Consensus 451 ~~~~i~~aDvvllViDa~~~~~~~d-~~~~~~l~~----~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~----- 520 (693)
...+++.+|++++|+|+++..+... ...+..+.+ .++|+++|+||+|+..... .++ +.+.+..
T Consensus 78 ~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~---~~~----i~~~l~l~~~~~ 150 (184)
T smart00178 78 WKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAAS---EDE----LRYALGLTNTTG 150 (184)
T ss_pred HHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCC---HHH----HHHHcCCCcccc
Confidence 1246789999999999987532222 123333322 4789999999999854322 122 2223211
Q ss_pred ------CCCCcEEEeccccCCCHHHHHHHHHH
Q 005504 521 ------LDWAPIVYSTAIAGQSVDKIIVAAEM 546 (693)
Q Consensus 521 ------~~~~piv~iSA~~g~gv~~L~~~i~~ 546 (693)
.....++++||++|.|+++++++|.+
T Consensus 151 ~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 151 SKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred cccccCCceeEEEEeecccCCChHHHHHHHHh
Confidence 12345999999999999999999864
No 248
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.71 E-value=2.3e-16 Score=154.99 Aligned_cols=151 Identities=17% Similarity=0.118 Sum_probs=99.5
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (693)
.+|+++|.+|||||||++++.......+ .|++..+. ..+.. ++..+.+|||||+.++..+ .
T Consensus 18 ~ki~ivG~~~~GKTsl~~~l~~~~~~~~--~pt~g~~~--~~~~~-~~~~~~i~D~~Gq~~~~~~--------------~ 78 (181)
T PLN00223 18 MRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNV--ETVEY-KNISFTVWDVGGQDKIRPL--------------W 78 (181)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCccc--cCCcceeE--EEEEE-CCEEEEEEECCCCHHHHHH--------------H
Confidence 7999999999999999999985433222 23222222 23333 5678999999998654322 1
Q ss_pred HHHHhcCCeEEEEecccccCCHHHH-HHHHHHHH----hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCC----
Q 005504 452 FRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD---- 522 (693)
Q Consensus 452 ~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~----~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~---- 522 (693)
..+++.+|++|+|+|+++..+..+. ..+..+.. .++|++||+||+|+..... .+ ++.+.+....
T Consensus 79 ~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~---~~----~~~~~l~l~~~~~~ 151 (181)
T PLN00223 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN---AA----EITDKLGLHSLRQR 151 (181)
T ss_pred HHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCC---HH----HHHHHhCccccCCC
Confidence 2357899999999999875433322 23333322 3689999999999865322 12 2333332111
Q ss_pred CCcEEEeccccCCCHHHHHHHHHHHH
Q 005504 523 WAPIVYSTAIAGQSVDKIIVAAEMVD 548 (693)
Q Consensus 523 ~~piv~iSA~~g~gv~~L~~~i~~~~ 548 (693)
...++++||++|.|+.++|++|.+..
T Consensus 152 ~~~~~~~Sa~~g~gv~e~~~~l~~~~ 177 (181)
T PLN00223 152 HWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
T ss_pred ceEEEeccCCCCCCHHHHHHHHHHHH
Confidence 12466799999999999999987553
No 249
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.71 E-value=2.6e-16 Score=152.17 Aligned_cols=155 Identities=17% Similarity=0.188 Sum_probs=103.4
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCC-CCCeEEEEeCccccchhhhccCCChhhHhHHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (693)
++|+++|.+|||||||++++.+... ...+..++.+.....+... ....+.+|||||+.++..+.
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~------------- 66 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVF--IESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMR------------- 66 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--CcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhh-------------
Confidence 5899999999999999999996642 2333444444433333331 22478999999987764332
Q ss_pred HHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHH----hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCc
Q 005504 451 AFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (693)
Q Consensus 451 ~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~----~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~p 525 (693)
...++.+|++++|+|.+++.+.+.. .+...+.. .++|+++|+||+|+....... .++ ...+. ...+..+
T Consensus 67 -~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~-~~~-~~~~~---~~~~~~~ 140 (168)
T cd04177 67 -ELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVS-RED-GVSLS---QQWGNVP 140 (168)
T ss_pred -HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccC-HHH-HHHHH---HHcCCce
Confidence 1246789999999999876444333 24444432 378999999999996543221 111 11122 2223378
Q ss_pred EEEeccccCCCHHHHHHHHHHH
Q 005504 526 IVYSTAIAGQSVDKIIVAAEMV 547 (693)
Q Consensus 526 iv~iSA~~g~gv~~L~~~i~~~ 547 (693)
++++||++|.|++++|+.+.+.
T Consensus 141 ~~~~SA~~~~~i~~~f~~i~~~ 162 (168)
T cd04177 141 FYETSARKRTNVDEVFIDLVRQ 162 (168)
T ss_pred EEEeeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999998653
No 250
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.71 E-value=2.4e-16 Score=151.05 Aligned_cols=151 Identities=17% Similarity=0.223 Sum_probs=106.2
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (693)
+|+++|.+|+|||||++++++.+. .....+..+.+.....+.+++ ..+.+|||||....
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~------------------ 62 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKF-SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERF------------------ 62 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHH------------------
Confidence 699999999999999999998763 333344555555555566666 46889999997431
Q ss_pred CCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHh---hc-CCCcEEEEecccCCccc
Q 005504 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRK---NY-MDKFIILAVNKCESPRK 318 (693)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~---~~-~~~p~ivv~NK~D~~~~ 318 (693)
.......+..+|++++|+|.+++.+.+. +.+|+.. .. .+.|+++|+||+|+...
T Consensus 63 --------------------~~~~~~~~~~~d~~ilv~d~~~~~s~~~--~~~~l~~~~~~~~~~~pivvv~nK~D~~~~ 120 (164)
T smart00175 63 --------------------RSITSSYYRGAVGALLVYDITNRESFEN--LKNWLKELREYADPNVVIMLVGNKSDLEDQ 120 (164)
T ss_pred --------------------HHHHHHHhCCCCEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCeEEEEEEchhcccc
Confidence 1233456778999999999987544432 2233322 11 36899999999998652
Q ss_pred hh---hhHHHH-HhcCCCCccccccCCCCHHHHHHHHHhhcc
Q 005504 319 GI---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (693)
Q Consensus 319 ~~---~~~~~~-~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l~ 356 (693)
.. .....+ ...++.++++||.+|.|++++++.|.+.+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~~~ 162 (164)
T smart00175 121 RQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREIL 162 (164)
T ss_pred cCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 21 112222 345678999999999999999999988764
No 251
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.70 E-value=2.2e-16 Score=152.27 Aligned_cols=154 Identities=17% Similarity=0.190 Sum_probs=102.1
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (693)
.+|+++|.+|||||||++++++.+. .....+.++.+.....+..++ ..+.+|||||....
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~----------------- 63 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSF-TSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERY----------------- 63 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHH-----------------
Confidence 4799999999999999999998762 212223332222222333333 56899999997531
Q ss_pred cCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHH-HHHHHHHHhhc-CCCcEEEEecccCCccch
Q 005504 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPRKG 319 (693)
Q Consensus 242 ~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d-~~i~~~L~~~~-~~~p~ivv~NK~D~~~~~ 319 (693)
.......++.+|++++|+|..+.-+.+. ..+.+.+++.. .+.|+++|+||+|+.+..
T Consensus 64 ---------------------~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 122 (165)
T cd01865 64 ---------------------RTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDER 122 (165)
T ss_pred ---------------------HHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCccc
Confidence 1233466789999999999886433221 12233333321 367899999999986542
Q ss_pred hh---hHHH-HHhcCCCCccccccCCCCHHHHHHHHHhhcc
Q 005504 320 IM---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (693)
Q Consensus 320 ~~---~~~~-~~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l~ 356 (693)
.. .... ...++++++++||++|.|+++|++.+.+.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 163 (165)
T cd01865 123 VVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDIIC 163 (165)
T ss_pred ccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 21 1112 2345678999999999999999999987654
No 252
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.70 E-value=1.5e-16 Score=163.57 Aligned_cols=166 Identities=23% Similarity=0.281 Sum_probs=124.8
Q ss_pred EEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHHHH
Q 005504 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (693)
Q Consensus 373 ~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~~ 452 (693)
-|++||.||+|||||++++...+ ..+.+||.||..+....+....+..+++-|.||+..-. +...-.-.+.+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~Ak-PKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGA-------s~G~GLG~~FL 232 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAK-PKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGA-------SEGVGLGLRFL 232 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcC-CcccCCccccccCcccEEEecCCCcEEEecCccccccc-------ccCCCccHHHH
Confidence 58999999999999999999764 66999999999999988876567789999999998743 33344567899
Q ss_pred HHHhcCCeEEEEecccccCC---HHH-HHHHHHHHHh-----CCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005504 453 RAIRRSDVVALVIEAMACIT---EQD-CRIAERIEQE-----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (693)
Q Consensus 453 ~~i~~aDvvllViDa~~~~~---~~d-~~~~~~l~~~-----~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~ 523 (693)
+++++|-++++|||.+.... .++ ..+..++..+ ++|.+||+||+|++... +..+.+.+.+.+. ..+
T Consensus 233 rHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~--e~~~~~~~~l~~~---~~~ 307 (369)
T COG0536 233 RHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDE--EELEELKKALAEA---LGW 307 (369)
T ss_pred HHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCH--HHHHHHHHHHHHh---cCC
Confidence 99999999999999975321 233 3355555554 79999999999975432 2223333333322 234
Q ss_pred CcEEEeccccCCCHHHHHHHHHHHHHHh
Q 005504 524 APIVYSTAIAGQSVDKIIVAAEMVDKER 551 (693)
Q Consensus 524 ~piv~iSA~~g~gv~~L~~~i~~~~~~~ 551 (693)
.+.+++||.+++|+++|+..+.+.+...
T Consensus 308 ~~~~~ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 308 EVFYLISALTREGLDELLRALAELLEET 335 (369)
T ss_pred CcceeeehhcccCHHHHHHHHHHHHHHh
Confidence 4444499999999999999998876553
No 253
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.70 E-value=1.2e-16 Score=177.77 Aligned_cols=158 Identities=18% Similarity=0.246 Sum_probs=114.0
Q ss_pred cCCcEEEeecCCCCChhhHHHHHhcCCCcee------------------------------cCCCCcccceEEEEEeCCC
Q 005504 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIV------------------------------SPISGTTRDAIDTEFTGPE 418 (693)
Q Consensus 369 ~~~~~I~ivG~~n~GKSSLin~llg~~~~~v------------------------------~~~~gtT~d~~~~~~~~~~ 418 (693)
...++|+++|++++|||||+++|+.....+. ....|+|++.....+.. +
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~-~ 83 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET-D 83 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc-C
Confidence 3457999999999999999999985322111 11348999988888875 6
Q ss_pred CCeEEEEeCccccchhhhccCCChhhHhHHHHHHHHHhcCCeEEEEeccccc---CCHHHHHHHHHHHHhC-CcEEEEEe
Q 005504 419 GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMAC---ITEQDCRIAERIEQEG-KGCLIVVN 494 (693)
Q Consensus 419 g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~---~~~~d~~~~~~l~~~~-~p~Ivv~N 494 (693)
+..+.+|||||+.++ ...+...+..+|++++|+|++++ ...+....+..+...+ .|+|+|+|
T Consensus 84 ~~~i~iiDtpGh~~f--------------~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviN 149 (426)
T TIGR00483 84 KYEVTIVDCPGHRDF--------------IKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAIN 149 (426)
T ss_pred CeEEEEEECCCHHHH--------------HHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEE
Confidence 789999999998654 22445567899999999999988 4444444444455555 46999999
Q ss_pred ccCCCCCcchhhHHHHHHHHHHHHhcCC----CCcEEEeccccCCCHHHHHH
Q 005504 495 KWDTIPNKNQQTATYYEQDVREKLRALD----WAPIVYSTAIAGQSVDKIIV 542 (693)
Q Consensus 495 K~Dl~~~~~~~~~~~~~~~i~~~l~~~~----~~piv~iSA~~g~gv~~L~~ 542 (693)
|+|+.... ....+...+++.+.+...+ ..+++++||++|.|++++..
T Consensus 150 K~Dl~~~~-~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~ 200 (426)
T TIGR00483 150 KMDSVNYD-EEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE 200 (426)
T ss_pred ChhccCcc-HHHHHHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence 99997422 2333444556666665443 36899999999999987654
No 254
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.70 E-value=2e-16 Score=151.50 Aligned_cols=152 Identities=17% Similarity=0.193 Sum_probs=103.7
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCe--eEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (693)
.+|+++|.+|||||||++++.+.. .+..+.+++.+.....+..++. .+.+|||||...+.
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------------- 63 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGI--FVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFT---------------- 63 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccc----------------
Confidence 479999999999999999999764 2334444554444455556664 46789999986421
Q ss_pred cCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH-HHHHHHHhh--cCCCcEEEEecccCCccc
Q 005504 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESPRK 318 (693)
Q Consensus 242 ~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~-~i~~~L~~~--~~~~p~ivv~NK~D~~~~ 318 (693)
.....+++.+|++++|+|..+..+..+. .+.+.+.+. ..+.|+++|+||+|+...
T Consensus 64 ----------------------~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 121 (163)
T cd04136 64 ----------------------AMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDE 121 (163)
T ss_pred ----------------------hHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 1223557889999999999865443322 233344331 236899999999998643
Q ss_pred hhh---hHHHH-HhcCCCCccccccCCCCHHHHHHHHHhhc
Q 005504 319 GIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (693)
Q Consensus 319 ~~~---~~~~~-~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l 355 (693)
... ....+ ...+.+++++||++|.|+.++++.|.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 122 RVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred ceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence 211 11112 23456789999999999999999998654
No 255
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.70 E-value=2.9e-16 Score=152.55 Aligned_cols=157 Identities=15% Similarity=0.162 Sum_probs=103.4
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCC--CeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
.||+++|.+|||||||++++++.... ..+..|..+.....+.. ++ ..+.+|||||+.+...+.
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~------------ 66 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFP--EVYVPTVFENYVADIEV-DGKQVELALWDTAGQEDYDRLR------------ 66 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccccceEEEEEE-CCEEEEEEEEeCCCchhhhhcc------------
Confidence 58999999999999999999975422 22333443433334443 33 368999999986643321
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHH--HHHHHHHH--hCCcEEEEEeccCCCCCcchhhHHHH---------HHHHHH
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQ--EGKGCLIVVNKWDTIPNKNQQTATYY---------EQDVRE 516 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~--~~~~~l~~--~~~p~Ivv~NK~Dl~~~~~~~~~~~~---------~~~i~~ 516 (693)
...+..+|++++|+|+.+..+.++. .|+..+.. .++|+++|+||+|+.+..... ..+ ....++
T Consensus 67 --~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~i~~~~~~~v~~~~~~~ 142 (175)
T cd01870 67 --PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTR--RELAKMKQEPVKPEEGRD 142 (175)
T ss_pred --ccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhh--hhhhhccCCCccHHHHHH
Confidence 1146889999999999865443443 35555554 378999999999986432110 000 011222
Q ss_pred HHhcCCCCcEEEeccccCCCHHHHHHHHHHH
Q 005504 517 KLRALDWAPIVYSTAIAGQSVDKIIVAAEMV 547 (693)
Q Consensus 517 ~l~~~~~~piv~iSA~~g~gv~~L~~~i~~~ 547 (693)
.....+..+++++||++|.|++++|+.+.+.
T Consensus 143 ~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 143 MANKIGAFGYMECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred HHHHcCCcEEEEeccccCcCHHHHHHHHHHH
Confidence 2233344589999999999999999998754
No 256
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.70 E-value=4.9e-16 Score=148.68 Aligned_cols=165 Identities=25% Similarity=0.325 Sum_probs=114.0
Q ss_pred EEEeecCCCCChhhHHHHHhc-CCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhH--hHHH
Q 005504 373 AIAIVGRPNVGKSSILNALVG-EDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEA--LSVN 449 (693)
Q Consensus 373 ~I~ivG~~n~GKSSLin~llg-~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~--~~~~ 449 (693)
.|+++|.+|+|||||+|.|++ ......+..+++|.+.....+ ...+.+|||||+..... .. ...+. ....
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~D~~g~~~~~~-~~--~~~~~~~~~~~ 73 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNV----NDKFRLVDLPGYGYAKV-SK--EVKEKWGKLIE 73 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEc----cCeEEEecCCCcccccc-CH--HHHHHHHHHHH
Confidence 379999999999999999994 334456677777776543322 23899999999754211 00 00011 1122
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHh-cCCCCcEEE
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLR-ALDWAPIVY 528 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~-~~~~~piv~ 528 (693)
..+.....++++++|+|.....+..+..+++++...+.|+++|+||+|+...... ......+...+. .....++++
T Consensus 74 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~ 150 (170)
T cd01876 74 EYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSEL---AKALKEIKKELKLFEIDPPIIL 150 (170)
T ss_pred HHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHH---HHHHHHHHHHHHhccCCCceEE
Confidence 2333334678899999998887788888888888889999999999999653221 122333444443 344578999
Q ss_pred eccccCCCHHHHHHHHHHH
Q 005504 529 STAIAGQSVDKIIVAAEMV 547 (693)
Q Consensus 529 iSA~~g~gv~~L~~~i~~~ 547 (693)
+||+++.|+.++++.+.+.
T Consensus 151 ~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 151 FSSLKGQGIDELRALIEKW 169 (170)
T ss_pred EecCCCCCHHHHHHHHHHh
Confidence 9999999999999998754
No 257
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.70 E-value=4e-16 Score=151.30 Aligned_cols=156 Identities=20% Similarity=0.177 Sum_probs=103.2
Q ss_pred CcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCC--CeEEEEeCccccchhhhccCCChhhHhHH
Q 005504 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (693)
Q Consensus 371 ~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (693)
..+|+++|.+|||||||++++++.... ....+....+.....+.. ++ ..+.+|||||..++..
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~------------- 66 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFP-ERTEATIGVDFRERTVEI-DGERIKVQLWDTAGQERFRK------------- 66 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC-CccccceeEEEEEEEEEE-CCeEEEEEEEeCCChHHHHH-------------
Confidence 368999999999999999999875421 122222223333333332 33 4789999999865421
Q ss_pred HHHHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHHh----CCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005504 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (693)
Q Consensus 449 ~~~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~~----~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~ 523 (693)
.-....++.+|++++|+|++++.+.++. .|+..+... ++|+++|+||+|+....... ....+.+. ....
T Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~----~~~~ 140 (170)
T cd04115 67 SMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVP--TDLAQRFA----DAHS 140 (170)
T ss_pred hhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCC--HHHHHHHH----HHcC
Confidence 0112346899999999999987666665 355555543 58999999999986433211 11112222 2224
Q ss_pred CcEEEecccc---CCCHHHHHHHHHHH
Q 005504 524 APIVYSTAIA---GQSVDKIIVAAEMV 547 (693)
Q Consensus 524 ~piv~iSA~~---g~gv~~L~~~i~~~ 547 (693)
.+++++||++ +.|++++|..+.+.
T Consensus 141 ~~~~e~Sa~~~~~~~~i~~~f~~l~~~ 167 (170)
T cd04115 141 MPLFETSAKDPSENDHVEAIFMTLAHK 167 (170)
T ss_pred CcEEEEeccCCcCCCCHHHHHHHHHHH
Confidence 7899999999 88999999887653
No 258
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.70 E-value=2.7e-16 Score=179.75 Aligned_cols=159 Identities=24% Similarity=0.259 Sum_probs=121.7
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCce-----e----------cCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhh
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTI-----V----------SPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAI 436 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~-----v----------~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~ 436 (693)
++|+|+|+.++|||||+++|+...... + ....|+|.......+.+ ++.++.+|||||+.+|..
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~-~~~kinlIDTPGh~DF~~- 79 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRY-NGTKINIVDTPGHADFGG- 79 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEE-CCEEEEEEECCCHHHHHH-
Confidence 589999999999999999998532211 1 11347888877767764 788999999999977632
Q ss_pred ccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHHHHHHH
Q 005504 437 ASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVRE 516 (693)
Q Consensus 437 ~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~ 516 (693)
.+.++++.+|++++|+|+.++...+...++..+...++|+|+|+||+|+..... .++.+++..
T Consensus 80 -------------ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~----~~v~~ei~~ 142 (594)
T TIGR01394 80 -------------EVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARP----DEVVDEVFD 142 (594)
T ss_pred -------------HHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCH----HHHHHHHHH
Confidence 345678899999999999999999999999999999999999999999864322 223344444
Q ss_pred HHhcC------CCCcEEEeccccCC----------CHHHHHHHHHHHHH
Q 005504 517 KLRAL------DWAPIVYSTAIAGQ----------SVDKIIVAAEMVDK 549 (693)
Q Consensus 517 ~l~~~------~~~piv~iSA~~g~----------gv~~L~~~i~~~~~ 549 (693)
.+..+ ...|++++||++|+ |++.|++.+.+...
T Consensus 143 l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 143 LFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred HHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence 44321 13689999999996 78888888876643
No 259
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.70 E-value=3e-16 Score=159.49 Aligned_cols=159 Identities=16% Similarity=0.126 Sum_probs=105.9
Q ss_pred CcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCC-CCCeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 371 ~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
..+|+++|.+|||||||++++++... ...+..|..+.....+... ....+.||||||..++..+.
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F--~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~------------ 78 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCY--PETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVR------------ 78 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCC--CCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHH------------
Confidence 46999999999999999999997532 1222223222222233321 22478999999986653221
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHH--HHHHHHHHHh--CCcEEEEEeccCCCCCcc----------hhhHHHHHHHHH
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQD--CRIAERIEQE--GKGCLIVVNKWDTIPNKN----------QQTATYYEQDVR 515 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d--~~~~~~l~~~--~~p~Ivv~NK~Dl~~~~~----------~~~~~~~~~~i~ 515 (693)
..+++.||++|+|+|.++..+.+. ..|+..+.+. +.|+|+|+||+||..... .... .++..
T Consensus 79 --~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs---~~e~~ 153 (232)
T cd04174 79 --PLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPIS---YEQGC 153 (232)
T ss_pred --HHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCC---HHHHH
Confidence 236789999999999998877765 3577777653 679999999999853110 0010 11222
Q ss_pred HHHhcCCCCcEEEeccccCC-CHHHHHHHHHHHH
Q 005504 516 EKLRALDWAPIVYSTAIAGQ-SVDKIIVAAEMVD 548 (693)
Q Consensus 516 ~~l~~~~~~piv~iSA~~g~-gv~~L~~~i~~~~ 548 (693)
+.....+..+++++||++|. ||+++|..+.+..
T Consensus 154 ~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~ 187 (232)
T cd04174 154 ALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLC 187 (232)
T ss_pred HHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHH
Confidence 23333332369999999997 8999999987653
No 260
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.70 E-value=2.3e-16 Score=180.69 Aligned_cols=154 Identities=19% Similarity=0.195 Sum_probs=120.6
Q ss_pred eEEEEcCCCCChhhHHHHhhcCce--eeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNR--AIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~--~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (693)
+|+++|++|+|||||+|+|+|... ......+|+|.+..+..+.+++..+.+|||||+..
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~------------------- 62 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEK------------------- 62 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHH-------------------
Confidence 689999999999999999998531 12234568999998888888889999999999853
Q ss_pred CCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCc-EEEEecccCCccchhh
Q 005504 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF-IILAVNKCESPRKGIM 321 (693)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p-~ivv~NK~D~~~~~~~ 321 (693)
+.+.+..++..+|++++|+|+.+|..+++.+.+.++.. .+.| +++|+||+|+.+....
T Consensus 63 -------------------f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~--lgi~~iIVVlNK~Dlv~~~~~ 121 (581)
T TIGR00475 63 -------------------FISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDL--LGIPHTIVVITKADRVNEEEI 121 (581)
T ss_pred -------------------HHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEECCCCCCHHHH
Confidence 12445577889999999999999998888888887766 4677 9999999999764321
Q ss_pred -----hHHHH-Hhc----CCCCccccccCCCCHHHHHHHHHhhcccc
Q 005504 322 -----QVSEF-WSL----GFSPLPISAISGTGTGELLDLVCSELKKV 358 (693)
Q Consensus 322 -----~~~~~-~~~----g~~~v~iSA~~g~gi~~Ll~~i~~~l~~~ 358 (693)
...++ ... +.+++++||.+|.|++++++.|.+.+...
T Consensus 122 ~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~ 168 (581)
T TIGR00475 122 KRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLESL 168 (581)
T ss_pred HHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHhC
Confidence 11122 122 35789999999999999999998877654
No 261
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.70 E-value=2.7e-16 Score=151.05 Aligned_cols=152 Identities=19% Similarity=0.194 Sum_probs=103.3
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (693)
+|+++|.+|||||||+|++++... ...+.+++.+.......+++ ..+.+|||||.....
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~----------------- 62 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHF--VDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFS----------------- 62 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC--CcccCCchhhhEEEEEEECCEEEEEEEEECCCcccch-----------------
Confidence 699999999999999999998652 23344444454444455555 467899999986421
Q ss_pred CCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH-HHHHHHHh--hcCCCcEEEEecccCCccch
Q 005504 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRK--NYMDKFIILAVNKCESPRKG 319 (693)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~-~i~~~L~~--~~~~~p~ivv~NK~D~~~~~ 319 (693)
......+..+|++++|+|+.+.-+.... .+...+.+ ...+.|+++|+||+|+....
T Consensus 63 ---------------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~ 121 (164)
T smart00173 63 ---------------------AMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESER 121 (164)
T ss_pred ---------------------HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence 1223567789999999999875433222 22223322 11368999999999986532
Q ss_pred h---hhHHHH-HhcCCCCccccccCCCCHHHHHHHHHhhcc
Q 005504 320 I---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (693)
Q Consensus 320 ~---~~~~~~-~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l~ 356 (693)
. .....+ ...+..++++||++|.|++++++.|.+.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 122 VVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred eEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHHHHh
Confidence 1 111112 234567899999999999999999987654
No 262
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.70 E-value=2.2e-16 Score=153.12 Aligned_cols=152 Identities=21% Similarity=0.239 Sum_probs=100.7
Q ss_pred CcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHH
Q 005504 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (693)
Q Consensus 371 ~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (693)
.++|+++|++|||||||+++|.+.......+..|.+.. .+.. ++..+.+|||||..++.. .
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~----~i~~-~~~~~~~~D~~G~~~~~~--------------~ 74 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIK----TVQS-DGFKLNVWDIGGQRAIRP--------------Y 74 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceE----EEEE-CCEEEEEEECCCCHHHHH--------------H
Confidence 47999999999999999999998755444444554432 2222 567899999999865321 1
Q ss_pred HHHHHhcCCeEEEEecccccCCHHH-HHHHHHH----HHhCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcC--CC
Q 005504 451 AFRAIRRSDVVALVIEAMACITEQD-CRIAERI----EQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRAL--DW 523 (693)
Q Consensus 451 ~~~~i~~aDvvllViDa~~~~~~~d-~~~~~~l----~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~--~~ 523 (693)
....++.+|++++|+|+++..+..+ ..++..+ ...++|+++++||+|+...... +++.+.+. +... ..
T Consensus 75 ~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~---~~i~~~l~--~~~~~~~~ 149 (173)
T cd04155 75 WRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPA---EEIAEALN--LHDLRDRT 149 (173)
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCH---HHHHHHcC--CcccCCCe
Confidence 2235689999999999986432222 1222222 2347999999999998653221 12222211 1111 12
Q ss_pred CcEEEeccccCCCHHHHHHHHHH
Q 005504 524 APIVYSTAIAGQSVDKIIVAAEM 546 (693)
Q Consensus 524 ~piv~iSA~~g~gv~~L~~~i~~ 546 (693)
.+++++||++|.|+++++++|.+
T Consensus 150 ~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 150 WHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred EEEEEeECCCCCCHHHHHHHHhc
Confidence 35789999999999999998853
No 263
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.70 E-value=2.9e-16 Score=151.92 Aligned_cols=152 Identities=16% Similarity=0.161 Sum_probs=104.5
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (693)
.+|+++|.+|||||||++++++.+... ...+..+.+.....+.+++ ..+.+|||||...
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~------------------ 65 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES------------------ 65 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCcHH------------------
Confidence 589999999999999999999875322 2223333444344445554 5689999999643
Q ss_pred cCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHH---hh-cCCCcEEEEecccCCcc
Q 005504 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLR---KN-YMDKFIILAVNKCESPR 317 (693)
Q Consensus 242 ~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~---~~-~~~~p~ivv~NK~D~~~ 317 (693)
+......+++.+|+++||+|+++..+.. .+..|+. +. ..+.|+++|+||+|+..
T Consensus 66 --------------------~~~~~~~~~~~~d~il~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 123 (168)
T cd01866 66 --------------------FRSITRSYYRGAAGALLVYDITRRETFN--HLTSWLEDARQHSNSNMTIMLIGNKCDLES 123 (168)
T ss_pred --------------------HHHHHHHHhccCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 1233456778899999999998643332 3344443 21 24689999999999874
Q ss_pred chhh---hHHH-HHhcCCCCccccccCCCCHHHHHHHHHhhcc
Q 005504 318 KGIM---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (693)
Q Consensus 318 ~~~~---~~~~-~~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l~ 356 (693)
.... .... ....+..++++||.+|.|+++++..+.+.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~~~~ 166 (168)
T cd01866 124 RREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAKEIY 166 (168)
T ss_pred ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3211 1111 2345678999999999999999998887653
No 264
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.70 E-value=3.1e-16 Score=160.04 Aligned_cols=152 Identities=24% Similarity=0.259 Sum_probs=109.1
Q ss_pred EEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHHHH
Q 005504 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (693)
Q Consensus 373 ~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~~ 452 (693)
+|+++|.||+|||||+|+|.|.. ..+..++++|.++..+.+.+ ++..+.+|||||+.+.... ......+..
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~-~~v~~~~~tT~~~~~g~~~~-~~~~i~l~DtpG~~~~~~~-------~~~~~~~~l 72 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK-SEVAAYEFTTLTCVPGVLEY-KGAKIQLLDLPGIIEGAAD-------GKGRGRQVI 72 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-ccccCCCCccccceEEEEEE-CCeEEEEEECCCccccccc-------chhHHHHHH
Confidence 68999999999999999999875 45788999999988887775 7889999999998653211 111233456
Q ss_pred HHHhcCCeEEEEecccccCCHHHHHHHHHH-------------------------------------------H-H----
Q 005504 453 RAIRRSDVVALVIEAMACITEQDCRIAERI-------------------------------------------E-Q---- 484 (693)
Q Consensus 453 ~~i~~aDvvllViDa~~~~~~~d~~~~~~l-------------------------------------------~-~---- 484 (693)
..++.+|++++|+|+++... +-..+.+.+ . +
T Consensus 73 ~~~~~ad~il~V~D~t~~~~-~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~ 151 (233)
T cd01896 73 AVARTADLILMVLDATKPEG-HREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIH 151 (233)
T ss_pred HhhccCCEEEEEecCCcchh-HHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCee
Confidence 67899999999999876421 111111111 1 1
Q ss_pred -----------------------hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcEEEeccccCCCHHHHH
Q 005504 485 -----------------------EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKII 541 (693)
Q Consensus 485 -----------------------~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~piv~iSA~~g~gv~~L~ 541 (693)
..+|+++|+||+|+..... .. .+.. ..+++++||++|.|+++|+
T Consensus 152 ~~~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~----------~~-~~~~--~~~~~~~SA~~g~gi~~l~ 218 (233)
T cd01896 152 NADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEE----------LD-LLAR--QPNSVVISAEKGLNLDELK 218 (233)
T ss_pred eEEEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCCCHHH----------HH-HHhc--CCCEEEEcCCCCCCHHHHH
Confidence 1369999999999964321 11 1221 3469999999999999999
Q ss_pred HHHHHH
Q 005504 542 VAAEMV 547 (693)
Q Consensus 542 ~~i~~~ 547 (693)
+.+.+.
T Consensus 219 ~~i~~~ 224 (233)
T cd01896 219 ERIWDK 224 (233)
T ss_pred HHHHHH
Confidence 988653
No 265
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.70 E-value=3.9e-16 Score=148.98 Aligned_cols=155 Identities=18% Similarity=0.170 Sum_probs=101.5
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCC-CCCeEEEEeCccccchhhhccCCChhhHhHHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (693)
.||+++|.+|+|||||+|++++..... ...+.++.+.....+... ....+.+|||||...+...
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-------------- 65 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNE-KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHAL-------------- 65 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHh--------------
Confidence 489999999999999999999765322 222233333333333321 2236899999997554221
Q ss_pred HHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHHh---CCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcE
Q 005504 451 AFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPI 526 (693)
Q Consensus 451 ~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~~---~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~pi 526 (693)
....++.+|++++|+|++++.+.++. .++..+... ++|+++|+||+|+....... .+ .+.+.... .+.++
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~-~~----~~~~~~~~-~~~~~ 139 (162)
T cd04123 66 GPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVS-KS----EAEEYAKS-VGAKH 139 (162)
T ss_pred hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCC-HH----HHHHHHHH-cCCEE
Confidence 11245789999999999886554443 244444432 68999999999987432211 11 12222222 24689
Q ss_pred EEeccccCCCHHHHHHHHHHH
Q 005504 527 VYSTAIAGQSVDKIIVAAEMV 547 (693)
Q Consensus 527 v~iSA~~g~gv~~L~~~i~~~ 547 (693)
+++||++|.|++++++++.+.
T Consensus 140 ~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 140 FETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred EEEeCCCCCCHHHHHHHHHHH
Confidence 999999999999999998653
No 266
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.70 E-value=3.5e-16 Score=150.22 Aligned_cols=152 Identities=16% Similarity=0.172 Sum_probs=102.2
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (693)
+|+++|.+|||||||+|++++.+. .....+.++.+.....+.+.+ ..+.+|||||....
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~------------------ 62 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRF-VSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEY------------------ 62 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHH------------------
Confidence 699999999999999999998763 223344444444444445544 56889999998531
Q ss_pred CCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH-HHHHHHHhhc------CCCcEEEEecccCC
Q 005504 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY------MDKFIILAVNKCES 315 (693)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~-~i~~~L~~~~------~~~p~ivv~NK~D~ 315 (693)
.......+..+|++|+|+|.++..+.... .+...+.+.. .+.|+++|+||+|+
T Consensus 63 --------------------~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 122 (168)
T cd04119 63 --------------------LEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDL 122 (168)
T ss_pred --------------------HHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhc
Confidence 12233456889999999999875332221 2222232221 35799999999998
Q ss_pred ccchh---hhHHH-HHhcCCCCccccccCCCCHHHHHHHHHhhc
Q 005504 316 PRKGI---MQVSE-FWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (693)
Q Consensus 316 ~~~~~---~~~~~-~~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l 355 (693)
..+.. ..... ....+..++++||.+|.|+.++++.|.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 123 TKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred ccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 63211 11111 233566789999999999999999998654
No 267
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=1.5e-16 Score=171.05 Aligned_cols=161 Identities=22% Similarity=0.228 Sum_probs=130.2
Q ss_pred cCCcEEEeecCCCCChhhHHHHHhcCCCc--------------eecCCCCcccceEEEEEeCCCC--CeEEEEeCccccc
Q 005504 369 NRIPAIAIVGRPNVGKSSILNALVGEDRT--------------IVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRK 432 (693)
Q Consensus 369 ~~~~~I~ivG~~n~GKSSLin~llg~~~~--------------~v~~~~gtT~d~~~~~~~~~~g--~~i~liDTpG~~~ 432 (693)
++.++++||.+...|||||..+|+....+ .+.-..|+|+......+.+.+| ..+.+||||||.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 45689999999999999999999854332 2334459999988877776333 5789999999999
Q ss_pred hhhhccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHHH
Q 005504 433 RAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQ 512 (693)
Q Consensus 433 ~~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~ 512 (693)
|+. ...+.+..||.+|+|+||.+|...|....+..+.+.|..+|.|+||+|+...+. +.+..
T Consensus 138 Fs~--------------EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adp----e~V~~ 199 (650)
T KOG0462|consen 138 FSG--------------EVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADP----ERVEN 199 (650)
T ss_pred ccc--------------eehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCH----HHHHH
Confidence 854 233467889999999999999999999999999999999999999999976433 34566
Q ss_pred HHHHHHhcCCCCcEEEeccccCCCHHHHHHHHHHHH
Q 005504 513 DVREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVD 548 (693)
Q Consensus 513 ~i~~~l~~~~~~piv~iSA~~g~gv~~L~~~i~~~~ 548 (693)
++.+.|.... .+++.+|||+|.|+++++++|.+..
T Consensus 200 q~~~lF~~~~-~~~i~vSAK~G~~v~~lL~AII~rV 234 (650)
T KOG0462|consen 200 QLFELFDIPP-AEVIYVSAKTGLNVEELLEAIIRRV 234 (650)
T ss_pred HHHHHhcCCc-cceEEEEeccCccHHHHHHHHHhhC
Confidence 6777666543 5899999999999999999998653
No 268
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.70 E-value=2.2e-16 Score=150.99 Aligned_cols=147 Identities=24% Similarity=0.316 Sum_probs=99.3
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCC
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (693)
+|+++|++|||||||+++|...... ...| |.......+.+.+..+.+|||||...+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~-------------------- 56 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV--TTIP--TIGFNVETVTYKNLKFQVWDLGGQTSI-------------------- 56 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc--CcCC--ccCcCeEEEEECCEEEEEEECCCCHHH--------------------
Confidence 4899999999999999999766532 2223 222223345667788999999998541
Q ss_pred CCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHH--HHHHHHHHHh-hcCCCcEEEEecccCCccch-h
Q 005504 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA--DEEIADWLRK-NYMDKFIILAVNKCESPRKG-I 320 (693)
Q Consensus 245 g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~--d~~i~~~L~~-~~~~~p~ivv~NK~D~~~~~-~ 320 (693)
...+..++..+|++|+|+|++...+.. ...+..+++. ...++|+++|+||+|+.... .
T Consensus 57 ------------------~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~ 118 (158)
T cd04151 57 ------------------RPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSE 118 (158)
T ss_pred ------------------HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCH
Confidence 133456778999999999988643221 2334444432 12468999999999986532 1
Q ss_pred hhHHHHHhc------CCCCccccccCCCCHHHHHHHHHh
Q 005504 321 MQVSEFWSL------GFSPLPISAISGTGTGELLDLVCS 353 (693)
Q Consensus 321 ~~~~~~~~~------g~~~v~iSA~~g~gi~~Ll~~i~~ 353 (693)
......... +.+++++||++|.|++++++.|.+
T Consensus 119 ~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 119 AEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 111111111 235899999999999999998864
No 269
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.70 E-value=3.4e-16 Score=158.68 Aligned_cols=155 Identities=14% Similarity=0.161 Sum_probs=100.3
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcc-cceEEEEEeC-CCCCeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTT-RDAIDTEFTG-PEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT-~d~~~~~~~~-~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
.||+++|.+|||||||++++++.... ...+..+. .+.....+.. .....+.+|||||+... ..
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~--------------~~ 65 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYD-DHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW--------------TE 65 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcC-ccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH--------------HH
Confidence 48999999999999999999754332 11222111 1222222222 13457899999998521 00
Q ss_pred HHHHHHh-cCCeEEEEecccccCCHHHH-HHHHHHHH----hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005504 450 RAFRAIR-RSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (693)
Q Consensus 450 ~~~~~i~-~aDvvllViDa~~~~~~~d~-~~~~~l~~----~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~ 523 (693)
...+. .+|++++|+|+++..+.... .|+..+.. .++|+|+|+||+|+........ ++ ... +....+
T Consensus 66 --~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~-~~-~~~----~a~~~~ 137 (221)
T cd04148 66 --DSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSV-QE-GRA----CAVVFD 137 (221)
T ss_pred --hHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecH-HH-HHH----HHHHcC
Confidence 11345 89999999999886554432 45565555 3689999999999965432211 11 111 222224
Q ss_pred CcEEEeccccCCCHHHHHHHHHHHHH
Q 005504 524 APIVYSTAIAGQSVDKIIVAAEMVDK 549 (693)
Q Consensus 524 ~piv~iSA~~g~gv~~L~~~i~~~~~ 549 (693)
++++++||++|.|++++|+.+.+...
T Consensus 138 ~~~~e~SA~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 138 CKFIETSAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred CeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999987643
No 270
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.69 E-value=2.9e-16 Score=154.99 Aligned_cols=150 Identities=17% Similarity=0.160 Sum_probs=101.1
Q ss_pred CcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHH
Q 005504 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (693)
Q Consensus 371 ~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (693)
..+|+++|++|||||||++++.+.....+.+ |.......+.. ++..+.+|||||+.++.. .
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~----T~~~~~~~i~~-~~~~~~l~D~~G~~~~~~--------------~ 79 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLAQHVP----TLHPTSEELTI-GNIKFKTFDLGGHEQARR--------------L 79 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCcccCC----ccCcceEEEEE-CCEEEEEEECCCCHHHHH--------------H
Confidence 4799999999999999999999865432222 22222334443 577899999999865321 1
Q ss_pred HHHHHhcCCeEEEEecccccCCHH-HHHHHHHHHH----hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhc-----
Q 005504 451 AFRAIRRSDVVALVIEAMACITEQ-DCRIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRA----- 520 (693)
Q Consensus 451 ~~~~i~~aDvvllViDa~~~~~~~-d~~~~~~l~~----~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~----- 520 (693)
...+++.+|++++|+|+++..+.. ...++..+.. .++|+++|+||+|+...... + ++...+..
T Consensus 80 ~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~---~----~~~~~~~~~~~~~ 152 (190)
T cd00879 80 WKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSE---E----ELRQALGLYGTTT 152 (190)
T ss_pred HHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCH---H----HHHHHhCcccccc
Confidence 234678999999999998653222 2233333332 46899999999998643221 2 22222221
Q ss_pred ----------CCCCcEEEeccccCCCHHHHHHHHHH
Q 005504 521 ----------LDWAPIVYSTAIAGQSVDKIIVAAEM 546 (693)
Q Consensus 521 ----------~~~~piv~iSA~~g~gv~~L~~~i~~ 546 (693)
....+++.+||++|.|++++|+++.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~ 188 (190)
T cd00879 153 GKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQ 188 (190)
T ss_pred cccccccccCceeEEEEEeEecCCCChHHHHHHHHh
Confidence 12246899999999999999999865
No 271
>PRK10218 GTP-binding protein; Provisional
Probab=99.69 E-value=4.2e-16 Score=177.99 Aligned_cols=160 Identities=22% Similarity=0.258 Sum_probs=121.5
Q ss_pred CCcEEEeecCCCCChhhHHHHHhcCCCcee---------------cCCCCcccceEEEEEeCCCCCeEEEEeCccccchh
Q 005504 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIV---------------SPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRA 434 (693)
Q Consensus 370 ~~~~I~ivG~~n~GKSSLin~llg~~~~~v---------------~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~ 434 (693)
..++|+++|+.++|||||+++|+....... ....|+|.......+.+ ++..+.+|||||+.++.
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~-~~~~inliDTPG~~df~ 82 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW-NDYRINIVDTPGHADFG 82 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEec-CCEEEEEEECCCcchhH
Confidence 357999999999999999999996322211 12357888777777774 78899999999997763
Q ss_pred hhccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHHHHH
Q 005504 435 AIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDV 514 (693)
Q Consensus 435 ~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i 514 (693)
. .+..+++.+|++|+|+|+.++...++..++..+...++|.|+|+||+|+...... ...+++
T Consensus 83 ~--------------~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~----~vl~ei 144 (607)
T PRK10218 83 G--------------EVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPD----WVVDQV 144 (607)
T ss_pred H--------------HHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchh----HHHHHH
Confidence 2 2345789999999999999999999999999999999999999999998654322 233344
Q ss_pred HHHHhcC------CCCcEEEeccccCC----------CHHHHHHHHHHHH
Q 005504 515 REKLRAL------DWAPIVYSTAIAGQ----------SVDKIIVAAEMVD 548 (693)
Q Consensus 515 ~~~l~~~------~~~piv~iSA~~g~----------gv~~L~~~i~~~~ 548 (693)
...+..+ ...|++++||++|+ |+..|++.|....
T Consensus 145 ~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 145 FDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV 194 (607)
T ss_pred HHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence 4444221 24789999999998 4777777766554
No 272
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.69 E-value=1.9e-16 Score=153.47 Aligned_cols=149 Identities=21% Similarity=0.254 Sum_probs=99.8
Q ss_pred CCeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005504 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (693)
Q Consensus 163 ~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (693)
..+|+++|.+|||||||+++|...... ...|++..+. ..+...+..+.+|||||....
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~--~~~~t~g~~~--~~~~~~~~~~~l~Dt~G~~~~------------------ 66 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSV--TTIPTVGFNV--ETVTYKNVKFNVWDVGGQDKI------------------ 66 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCc--cccCCcccce--EEEEECCEEEEEEECCCCHHH------------------
Confidence 358999999999999999999865432 2233333322 234556788999999998531
Q ss_pred CCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHH--HHHHHHHHHh-hcCCCcEEEEecccCCccch
Q 005504 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA--DEEIADWLRK-NYMDKFIILAVNKCESPRKG 319 (693)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~--d~~i~~~L~~-~~~~~p~ivv~NK~D~~~~~ 319 (693)
......+++.||+++||+|+++..+.. ...+.+.+.. ...+.|+++|+||+|+....
T Consensus 67 --------------------~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 126 (168)
T cd04149 67 --------------------RPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAM 126 (168)
T ss_pred --------------------HHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCC
Confidence 123345678999999999998753322 2233334332 12468999999999986421
Q ss_pred -hhhHHHHHhc------CCCCccccccCCCCHHHHHHHHHh
Q 005504 320 -IMQVSEFWSL------GFSPLPISAISGTGTGELLDLVCS 353 (693)
Q Consensus 320 -~~~~~~~~~~------g~~~v~iSA~~g~gi~~Ll~~i~~ 353 (693)
.....++..+ .+.++++||++|.|+++++++|.+
T Consensus 127 ~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 127 KPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred CHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence 1122222221 225689999999999999998864
No 273
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.69 E-value=2.5e-16 Score=150.94 Aligned_cols=153 Identities=20% Similarity=0.192 Sum_probs=101.4
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (693)
.+|+++|++|+|||||+|+|++.+... ...+..........+.+++ ..+.+|||||....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~----------------- 63 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSE-NQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERY----------------- 63 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEeCCchHHH-----------------
Confidence 379999999999999999999886322 1222222222233344444 56889999997431
Q ss_pred cCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHH-HHHHHHHHhhc-CCCcEEEEecccCCccch
Q 005504 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPRKG 319 (693)
Q Consensus 242 ~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d-~~i~~~L~~~~-~~~p~ivv~NK~D~~~~~ 319 (693)
.......++.+|++++|+|+.++-+... ..+++.+.... ...|+++|+||+|+....
T Consensus 64 ---------------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 122 (163)
T cd01860 64 ---------------------RSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKR 122 (163)
T ss_pred ---------------------HHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccC
Confidence 1223356778999999999986533222 23334443322 457899999999987321
Q ss_pred h---hhHHH-HHhcCCCCccccccCCCCHHHHHHHHHhhc
Q 005504 320 I---MQVSE-FWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (693)
Q Consensus 320 ~---~~~~~-~~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l 355 (693)
. ..... ....+..++++||.+|.|+.++++.|.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 123 QVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred cCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 1 11111 234567799999999999999999998765
No 274
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.69 E-value=5.6e-16 Score=147.57 Aligned_cols=152 Identities=20% Similarity=0.206 Sum_probs=105.2
Q ss_pred EEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCC-CCeEEEEeCccccchhhhccCCChhhHhHHHHH
Q 005504 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (693)
Q Consensus 373 ~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~-g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~ 451 (693)
||+++|.+|||||||++++++.. ....+..++.+.....+.... ...+.+|||||+.+... ..
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------------~~ 64 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSA--------------MR 64 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHH--------------HH
Confidence 68999999999999999999765 345555566665555555421 24788999999865321 12
Q ss_pred HHHHhcCCeEEEEecccccCCHHHH-HHHHHHHH----hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcE
Q 005504 452 FRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPI 526 (693)
Q Consensus 452 ~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~----~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~pi 526 (693)
...++.+|++++|+|.++..+..+. .+...+.. .++|+++|+||+|+....... . +.+....... ..++
T Consensus 65 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~----~~~~~~~~~~-~~~~ 138 (160)
T cd00876 65 DLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVS-K----EEGKALAKEW-GCPF 138 (160)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceec-H----HHHHHHHHHc-CCcE
Confidence 3467889999999999876444333 34444433 379999999999997532211 1 1222222222 2789
Q ss_pred EEeccccCCCHHHHHHHHHH
Q 005504 527 VYSTAIAGQSVDKIIVAAEM 546 (693)
Q Consensus 527 v~iSA~~g~gv~~L~~~i~~ 546 (693)
+++||++|.|++++++.|.+
T Consensus 139 ~~~S~~~~~~i~~l~~~l~~ 158 (160)
T cd00876 139 IETSAKDNINIDEVFKLLVR 158 (160)
T ss_pred EEeccCCCCCHHHHHHHHHh
Confidence 99999999999999998864
No 275
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.69 E-value=6.7e-16 Score=160.55 Aligned_cols=114 Identities=22% Similarity=0.302 Sum_probs=87.3
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCcee---------------cCCC------CcccceEEEEEeCCCCCeEEEEeCccc
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIV---------------SPIS------GTTRDAIDTEFTGPEGQKFRLIDTAGI 430 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v---------------~~~~------gtT~d~~~~~~~~~~g~~i~liDTpG~ 430 (693)
++|+++|++|+|||||+++|+.....+. .++. |.+.......+.+ ++.++.+|||||+
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~-~~~~i~liDTPG~ 81 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEY-RDCVINLLDTPGH 81 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEee-CCEEEEEEECCCc
Confidence 6899999999999999999985432211 1111 3333344445553 7889999999998
Q ss_pred cchhhhccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCC
Q 005504 431 RKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIP 500 (693)
Q Consensus 431 ~~~~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~ 500 (693)
.++. ..+..+++.+|++|+|+|++.+...+...+++.+...++|+++++||+|+..
T Consensus 82 ~df~--------------~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~ 137 (267)
T cd04169 82 EDFS--------------EDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREG 137 (267)
T ss_pred hHHH--------------HHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCC
Confidence 7652 2355678899999999999998888888888888888999999999999754
No 276
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.69 E-value=4.5e-16 Score=154.21 Aligned_cols=159 Identities=15% Similarity=0.140 Sum_probs=103.8
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCC--CeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
+||+++|.+|||||||+++++..... ..+..|..+.....+.. ++ ..+.+|||||+.++..++
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f~--~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~e~~~~l~------------ 68 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAFP--KEYIPTVFDNYSAQTAV-DGRTVSLNLWDTAGQEEYDRLR------------ 68 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCC--cCCCCceEeeeEEEEEE-CCEEEEEEEEECCCchhhhhhh------------
Confidence 69999999999999999999965321 22222222322222332 33 468899999997753322
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHHH--HHHHHHH--hCCcEEEEEeccCCCCCcchh-hHHH-----H-HHHHHHHH
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDCR--IAERIEQ--EGKGCLIVVNKWDTIPNKNQQ-TATY-----Y-EQDVREKL 518 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~~--~~~~l~~--~~~p~Ivv~NK~Dl~~~~~~~-~~~~-----~-~~~i~~~l 518 (693)
..+++.+|++|+|+|.++..+.+... |...+.. .+.|+++|+||.||....... ...+ + .++..+..
T Consensus 69 --~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a 146 (191)
T cd01875 69 --TLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALA 146 (191)
T ss_pred --hhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHH
Confidence 12568999999999999877666653 5555543 378999999999995432100 0000 0 01112222
Q ss_pred hcCCCCcEEEeccccCCCHHHHHHHHHHH
Q 005504 519 RALDWAPIVYSTAIAGQSVDKIIVAAEMV 547 (693)
Q Consensus 519 ~~~~~~piv~iSA~~g~gv~~L~~~i~~~ 547 (693)
...+..+++++||++|.||+++|..+.+.
T Consensus 147 ~~~~~~~~~e~SAk~g~~v~e~f~~l~~~ 175 (191)
T cd01875 147 KQIHAVKYLECSALNQDGVKEVFAEAVRA 175 (191)
T ss_pred HHcCCcEEEEeCCCCCCCHHHHHHHHHHH
Confidence 22333589999999999999999988754
No 277
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.69 E-value=3.7e-16 Score=151.01 Aligned_cols=153 Identities=18% Similarity=0.126 Sum_probs=104.1
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (693)
.+|+++|.+|||||||++++.+.+ ......++.+.+.....+.+++ ..+.+|||||....
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~----------------- 65 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDS-FNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERF----------------- 65 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCc-CCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHH-----------------
Confidence 589999999999999999999875 2222234444444444455655 46889999997531
Q ss_pred cCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH-HHHHHHHhh-cCCCcEEEEecccCCccch
Q 005504 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPRKG 319 (693)
Q Consensus 242 ~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~-~i~~~L~~~-~~~~p~ivv~NK~D~~~~~ 319 (693)
.......++.+|++++|+|+.++.+.... .+...+.+. ..+.|+++|+||+|+....
T Consensus 66 ---------------------~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~ 124 (167)
T cd01867 66 ---------------------RTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKR 124 (167)
T ss_pred ---------------------HHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccccc
Confidence 12234567899999999999875443221 222222222 1367999999999997532
Q ss_pred hh---hHHH-HHhcCCCCccccccCCCCHHHHHHHHHhhc
Q 005504 320 IM---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (693)
Q Consensus 320 ~~---~~~~-~~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l 355 (693)
.. .... ....+.+++++||.+|.|++++++.|.+.+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 125 VVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred CCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 11 1111 223566789999999999999999998765
No 278
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.69 E-value=3.9e-16 Score=150.13 Aligned_cols=152 Identities=19% Similarity=0.220 Sum_probs=104.7
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCe--eEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (693)
.+|+++|.+|||||||+++++... .+..+++++.+.....+.+++. .+.+|||||.....
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------------- 63 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGI--FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFT---------------- 63 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCC--CCcccCCcchheEEEEEEECCEEEEEEEEECCCcccch----------------
Confidence 479999999999999999999653 3344555555554445566654 46799999986421
Q ss_pred cCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH-HHHHHHHh--hcCCCcEEEEecccCCccc
Q 005504 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRK--NYMDKFIILAVNKCESPRK 318 (693)
Q Consensus 242 ~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~-~i~~~L~~--~~~~~p~ivv~NK~D~~~~ 318 (693)
.....+++.+|++++|+|..+.-+..+. .+...+.+ ...+.|+++|+||+|+..+
T Consensus 64 ----------------------~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 121 (164)
T cd04175 64 ----------------------AMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 121 (164)
T ss_pred ----------------------hHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhc
Confidence 2233567889999999998765443322 23333322 2246899999999998653
Q ss_pred hhh---hHHHH-HhcCCCCccccccCCCCHHHHHHHHHhhc
Q 005504 319 GIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (693)
Q Consensus 319 ~~~---~~~~~-~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l 355 (693)
... ....+ ..++.+++++||++|.|+++++.+|.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 122 RVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred cEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 211 11122 34566889999999999999999998755
No 279
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.69 E-value=4.4e-16 Score=150.02 Aligned_cols=152 Identities=16% Similarity=0.169 Sum_probs=103.0
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (693)
.+|+++|.+|+|||||++++.+.... ....+..+.+.....+.+++ ..+.+|||||...+
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~----------------- 65 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGTFS-ERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERF----------------- 65 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCc-ccCCCccceEEEEEEEEECCEEEEEEEEECCChHHH-----------------
Confidence 57999999999999999999876522 12223333344445566666 46899999997531
Q ss_pred cCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHH-HHHHHHHHh-hcCCCcEEEEecccCCccch
Q 005504 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRK-NYMDKFIILAVNKCESPRKG 319 (693)
Q Consensus 242 ~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d-~~i~~~L~~-~~~~~p~ivv~NK~D~~~~~ 319 (693)
.......+..+|++++|+|+.++.+.+. ..+++.+.. ...+.|+++|+||+|+....
T Consensus 66 ---------------------~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 124 (165)
T cd01864 66 ---------------------RTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQR 124 (165)
T ss_pred ---------------------HHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccccc
Confidence 1233456788999999999987644332 123333333 22467999999999986532
Q ss_pred hh---hHHHH-HhcCC-CCccccccCCCCHHHHHHHHHhh
Q 005504 320 IM---QVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSE 354 (693)
Q Consensus 320 ~~---~~~~~-~~~g~-~~v~iSA~~g~gi~~Ll~~i~~~ 354 (693)
.. ....+ ...+. .++++||++|.|++++++.|.+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 125 EVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred ccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence 21 11222 23444 57999999999999999998764
No 280
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.69 E-value=2.3e-16 Score=162.01 Aligned_cols=143 Identities=22% Similarity=0.263 Sum_probs=104.8
Q ss_pred HHHHhcCeEEEEEeCCCCC-CHHHHHHHHHHHh-hcCCCcEEEEecccCCccchhh---hHHHHHhcCCCCccccccCCC
Q 005504 268 AAIEESCVIIFLVDGQAGL-TAADEEIADWLRK-NYMDKFIILAVNKCESPRKGIM---QVSEFWSLGFSPLPISAISGT 342 (693)
Q Consensus 268 ~~i~~adiil~VvD~~~~~-~~~d~~i~~~L~~-~~~~~p~ivv~NK~D~~~~~~~---~~~~~~~~g~~~v~iSA~~g~ 342 (693)
.+++++|.+++|+|+.++. +... +.+|+.. ...+.|+++|+||+|+...... ....+...|+.++.+||++|.
T Consensus 32 ~~~~n~D~viiV~d~~~p~~s~~~--l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~~~SAktg~ 109 (245)
T TIGR00157 32 PIVANIDQIVIVSSAVLPELSLNQ--LDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSKNQD 109 (245)
T ss_pred cccccCCEEEEEEECCCCCCCHHH--HHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEEEEecCCch
Confidence 4678999999999998655 3322 2333321 1157899999999999653221 122344567789999999999
Q ss_pred CHHHHHHHHHhhcccccCccchhhhccCCcEEEeecCCCCChhhHHHHHhcCCCceecCCC-------CcccceEEEEEe
Q 005504 343 GTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPIS-------GTTRDAIDTEFT 415 (693)
Q Consensus 343 gi~~Ll~~i~~~l~~~~~~~~~~~~~~~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~-------gtT~d~~~~~~~ 415 (693)
|+++|++.+.. ..++++|.||||||||+|+|++.....+++++ +||++.....+
T Consensus 110 gi~eLf~~l~~------------------~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l- 170 (245)
T TIGR00157 110 GLKELIEALQN------------------RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF- 170 (245)
T ss_pred hHHHHHhhhcC------------------CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc-
Confidence 99999887642 36899999999999999999998766655554 38888776555
Q ss_pred CCCCCeEEEEeCccccchhh
Q 005504 416 GPEGQKFRLIDTAGIRKRAA 435 (693)
Q Consensus 416 ~~~g~~i~liDTpG~~~~~~ 435 (693)
.+| .++||||++.+.-
T Consensus 171 -~~~---~liDtPG~~~~~l 186 (245)
T TIGR00157 171 -HGG---LIADTPGFNEFGL 186 (245)
T ss_pred -CCc---EEEeCCCccccCC
Confidence 133 8999999988643
No 281
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.69 E-value=4.6e-16 Score=155.31 Aligned_cols=153 Identities=20% Similarity=0.171 Sum_probs=108.1
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (693)
.|+++|..|||||||++++.... ......+.++.+.....+.+++ ..+.+|||+|...+
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~-f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~------------------ 62 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDT-FCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERF------------------ 62 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCC-CCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhh------------------
Confidence 58999999999999999999765 2222234444555555667776 56889999998641
Q ss_pred CCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH-HHHHHHHhh-cCCCcEEEEecccCCccchh
Q 005504 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPRKGI 320 (693)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~-~i~~~L~~~-~~~~p~ivv~NK~D~~~~~~ 320 (693)
......+++.+|++|+|+|.++.-+.+.. .+.+.+++. ..+.|+++|+||+|+.....
T Consensus 63 --------------------~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~ 122 (202)
T cd04120 63 --------------------NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDRE 122 (202)
T ss_pred --------------------HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccc
Confidence 13345678899999999999986555443 233444432 24689999999999864322
Q ss_pred h---hHHHHH-h-cCCCCccccccCCCCHHHHHHHHHhhcc
Q 005504 321 M---QVSEFW-S-LGFSPLPISAISGTGTGELLDLVCSELK 356 (693)
Q Consensus 321 ~---~~~~~~-~-~g~~~v~iSA~~g~gi~~Ll~~i~~~l~ 356 (693)
. ....+. . .+..++++||++|.|++++++.|...+.
T Consensus 123 v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~~~~ 163 (202)
T cd04120 123 ISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDIL 163 (202)
T ss_pred cCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 1 112222 2 2567899999999999999999987664
No 282
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.69 E-value=3.9e-16 Score=154.55 Aligned_cols=155 Identities=19% Similarity=0.173 Sum_probs=104.4
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCC-CCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDE-PGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~-~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (693)
+|+++|.+|||||||++++.+.. .....+ +++..+.....+.+++ ..+.||||||....
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------------- 63 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGA-FLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERF----------------- 63 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHH-----------------
Confidence 69999999999999999999875 222222 3333333333345555 46889999996431
Q ss_pred cCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHH-HHHHHHHHhhc-CCCcEEEEecccCCccch
Q 005504 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPRKG 319 (693)
Q Consensus 242 ~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d-~~i~~~L~~~~-~~~p~ivv~NK~D~~~~~ 319 (693)
.......+..+|++++|+|+....+..+ ..+...+++.. .+.|+++|+||+|+....
T Consensus 64 ---------------------~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~ 122 (191)
T cd04112 64 ---------------------RSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGER 122 (191)
T ss_pred ---------------------HHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhcc
Confidence 1223356778999999999987543332 22333444322 367999999999986422
Q ss_pred h---hhHHH-HHhcCCCCccccccCCCCHHHHHHHHHhhcccc
Q 005504 320 I---MQVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (693)
Q Consensus 320 ~---~~~~~-~~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l~~~ 358 (693)
. ..... ....+.+++++||.+|.|+++|++.|.+.+.+.
T Consensus 123 ~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 123 VVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHR 165 (191)
T ss_pred ccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 1 11111 223566889999999999999999999877643
No 283
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.69 E-value=3.4e-16 Score=156.64 Aligned_cols=154 Identities=19% Similarity=0.151 Sum_probs=104.8
Q ss_pred eEEEEcCCCCChhhHHHHhhcCc--eeeecCCCCceeeeEEEEEEec---------------------------C-----
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGN--RAIVVDEPGVTRDRMYGRSFWG---------------------------E----- 210 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~--~~~v~~~~~~T~~~~~~~~~~~---------------------------~----- 210 (693)
.|+++||.|+|||||+.+|.+.. ...-....+.|..+......|. +
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 58999999999999999998651 1111111233333333333332 3
Q ss_pred -eeEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCC-CCH
Q 005504 211 -HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG-LTA 288 (693)
Q Consensus 211 -~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~-~~~ 288 (693)
..+.+|||||+.. +...+..++..+|++++|+|+..+ ...
T Consensus 82 ~~~i~~iDtPG~~~--------------------------------------~~~~~~~~~~~~D~~llVvd~~~~~~~~ 123 (203)
T cd01888 82 VRHVSFVDCPGHEI--------------------------------------LMATMLSGAAVMDGALLLIAANEPCPQP 123 (203)
T ss_pred ccEEEEEECCChHH--------------------------------------HHHHHHHhhhcCCEEEEEEECCCCCCCc
Confidence 6799999999743 234566778899999999999974 455
Q ss_pred HHHHHHHHHHhhcCCCcEEEEecccCCccchh-h----hHHHHHh----cCCCCccccccCCCCHHHHHHHHHhhccc
Q 005504 289 ADEEIADWLRKNYMDKFIILAVNKCESPRKGI-M----QVSEFWS----LGFSPLPISAISGTGTGELLDLVCSELKK 357 (693)
Q Consensus 289 ~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~~-~----~~~~~~~----~g~~~v~iSA~~g~gi~~Ll~~i~~~l~~ 357 (693)
+....+..+... ..+|+++|+||+|+..... . ...++.. .+.+++++||.+|.|+++|++.|.+.+++
T Consensus 124 ~t~~~l~~~~~~-~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 124 QTSEHLAALEIM-GLKHIIIVQNKIDLVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred chHHHHHHHHHc-CCCcEEEEEEchhccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 555566655442 2357999999999975321 1 1111221 14468999999999999999999988775
No 284
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.69 E-value=3.2e-16 Score=151.92 Aligned_cols=151 Identities=21% Similarity=0.239 Sum_probs=102.0
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCC
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (693)
+|+++|.+|||||||++++.+.. .... ..|.......+.+.+..+.+|||||.....
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~--~~~~--~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~------------------- 57 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDE--FMQP--IPTIGFNVETVEYKNLKFTIWDVGGKHKLR------------------- 57 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCC--CCCc--CCcCceeEEEEEECCEEEEEEECCCChhcc-------------------
Confidence 48899999999999999999864 2222 234444445567788899999999985411
Q ss_pred CCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCH--HHHHHHHHHHhh-cCCCcEEEEecccCCccch-h
Q 005504 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTA--ADEEIADWLRKN-YMDKFIILAVNKCESPRKG-I 320 (693)
Q Consensus 245 g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~--~d~~i~~~L~~~-~~~~p~ivv~NK~D~~~~~-~ 320 (693)
..+..++..+|+++||+|+++..+. ....+.+.++.. ..+.|+++|+||+|+.... .
T Consensus 58 -------------------~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~ 118 (169)
T cd04158 58 -------------------PLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSV 118 (169)
T ss_pred -------------------hHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCH
Confidence 2334567889999999999865322 222333333321 2357999999999986431 1
Q ss_pred hhHHHHHh---cC----CCCccccccCCCCHHHHHHHHHhhccc
Q 005504 321 MQVSEFWS---LG----FSPLPISAISGTGTGELLDLVCSELKK 357 (693)
Q Consensus 321 ~~~~~~~~---~g----~~~v~iSA~~g~gi~~Ll~~i~~~l~~ 357 (693)
.....+.. .+ +.++++||++|.|+++++++|.+.+..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~ 162 (169)
T cd04158 119 EEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVA 162 (169)
T ss_pred HHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhh
Confidence 11222222 11 146689999999999999999876653
No 285
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.69 E-value=4e-16 Score=154.31 Aligned_cols=152 Identities=17% Similarity=0.169 Sum_probs=104.0
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCe--eEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (693)
+|+++|.+|||||||+++|.+... ...+++++.+.......+++. .+.+|||||.....
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------------- 61 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHF--VETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYT----------------- 61 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--CccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhH-----------------
Confidence 489999999999999999997642 233444444444444556664 47889999975311
Q ss_pred CCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH-HHHHHHHhh----cCCCcEEEEecccCCcc
Q 005504 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN----YMDKFIILAVNKCESPR 317 (693)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~-~i~~~L~~~----~~~~p~ivv~NK~D~~~ 317 (693)
.....+++.+|++|+|+|..+..+.... .+.+.+... ..+.|+++|+||+|+..
T Consensus 62 ---------------------~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~ 120 (190)
T cd04144 62 ---------------------ALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY 120 (190)
T ss_pred ---------------------HHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc
Confidence 2233578899999999999875443332 333334331 13689999999999864
Q ss_pred chhh---hHHHH-HhcCCCCccccccCCCCHHHHHHHHHhhcc
Q 005504 318 KGIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (693)
Q Consensus 318 ~~~~---~~~~~-~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l~ 356 (693)
.... ....+ ...+..++++||.+|.|++++++.+.+.+.
T Consensus 121 ~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~ 163 (190)
T cd04144 121 EREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALR 163 (190)
T ss_pred cCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 2211 11222 234667899999999999999999987664
No 286
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.69 E-value=3.5e-16 Score=149.72 Aligned_cols=147 Identities=21% Similarity=0.266 Sum_probs=97.9
Q ss_pred eEEEEcCCCCChhhHHHHhhcCce--eeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNR--AIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~--~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (693)
+|+++|.+|||||||+++|++... ....++.|.+ .....+.+..+.+|||||....
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~----~~~~~~~~~~~~l~Dt~G~~~~------------------ 58 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFN----VESFEKGNLSFTAFDMSGQGKY------------------ 58 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccc----eEEEEECCEEEEEEECCCCHhh------------------
Confidence 488999999999999999998642 2233333332 2234567788999999998641
Q ss_pred CCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHH--HHHHHHHHhh---cCCCcEEEEecccCCcc
Q 005504 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKN---YMDKFIILAVNKCESPR 317 (693)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d--~~i~~~L~~~---~~~~p~ivv~NK~D~~~ 317 (693)
......++..+|+++||+|++++.+... ..+..+++.. ..+.|+++|+||+|+..
T Consensus 59 --------------------~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~ 118 (162)
T cd04157 59 --------------------RGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPD 118 (162)
T ss_pred --------------------HHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccC
Confidence 1233456788999999999987643321 1222222211 13689999999999875
Q ss_pred chh-hhHHHHHhc------CCCCccccccCCCCHHHHHHHHHh
Q 005504 318 KGI-MQVSEFWSL------GFSPLPISAISGTGTGELLDLVCS 353 (693)
Q Consensus 318 ~~~-~~~~~~~~~------g~~~v~iSA~~g~gi~~Ll~~i~~ 353 (693)
... ........+ .+.++++||++|.|+++++++|.+
T Consensus 119 ~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 119 ALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred CCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence 321 111222211 124689999999999999998854
No 287
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.69 E-value=2.3e-16 Score=152.68 Aligned_cols=152 Identities=23% Similarity=0.209 Sum_probs=102.0
Q ss_pred EEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHHHH
Q 005504 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (693)
Q Consensus 373 ~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~~ 452 (693)
+|+++|.+|||||||+++|.+.......+..|.++ ..+.. ++..+.+|||||..++..+ ..
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~----~~~~~-~~~~~~i~D~~G~~~~~~~--------------~~ 61 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTP----TKLRL-DKYEVCIFDLGGGANFRGI--------------WV 61 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceE----EEEEE-CCEEEEEEECCCcHHHHHH--------------HH
Confidence 48999999999999999999763333444444432 23333 5678999999998654222 23
Q ss_pred HHHhcCCeEEEEecccccCCHHHH-HHHHHHHH----hCCcEEEEEeccCCCCCcchhhHHHHHHHHH-HHHh-cCC-CC
Q 005504 453 RAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVR-EKLR-ALD-WA 524 (693)
Q Consensus 453 ~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~----~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~-~~l~-~~~-~~ 524 (693)
.+++.||++++|+|+++..+.++. .++..+.. .++|+++|+||+|+...... .++.+.+. +.+. ... ..
T Consensus 62 ~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~---~~i~~~~~l~~~~~~~~~~~ 138 (167)
T cd04161 62 NYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLG---ADVIEYLSLEKLVNENKSLC 138 (167)
T ss_pred HHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCH---HHHHHhcCcccccCCCCceE
Confidence 467999999999999876444332 34554443 37899999999999654321 12222211 1121 112 24
Q ss_pred cEEEeccccC------CCHHHHHHHHHH
Q 005504 525 PIVYSTAIAG------QSVDKIIVAAEM 546 (693)
Q Consensus 525 piv~iSA~~g------~gv~~L~~~i~~ 546 (693)
+++.+||++| .|+.+.|++|.+
T Consensus 139 ~~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 139 HIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred EEEEeEceeCCCCccccCHHHHHHHHhc
Confidence 6888999998 899999999853
No 288
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.68 E-value=5.4e-16 Score=156.57 Aligned_cols=154 Identities=17% Similarity=0.193 Sum_probs=106.1
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC---eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE---HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~---~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (693)
+|+++|.+|||||||+++|.+.. ......|.++.+.....+.+.+ ..+.+|||||....
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~-~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~----------------- 63 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEG-FGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIG----------------- 63 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCC-CCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHH-----------------
Confidence 68999999999999999999865 2233345555565555566643 57899999997431
Q ss_pred cCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH-HHHHHHHhhc----CCCcEEEEecccCCc
Q 005504 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY----MDKFIILAVNKCESP 316 (693)
Q Consensus 242 ~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~-~i~~~L~~~~----~~~p~ivv~NK~D~~ 316 (693)
......++..+|++|||+|.++.-+.... .+.+.+.+.. .+.|+++|+||+|+.
T Consensus 64 ---------------------~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~ 122 (215)
T cd04109 64 ---------------------GKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE 122 (215)
T ss_pred ---------------------HHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccc
Confidence 12233557899999999999875444332 2344444321 235789999999986
Q ss_pred cchhh---hHHHH-HhcCCCCccccccCCCCHHHHHHHHHhhccc
Q 005504 317 RKGIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (693)
Q Consensus 317 ~~~~~---~~~~~-~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l~~ 357 (693)
..... ....+ ...+..++++||++|.|++++++.|.+.+..
T Consensus 123 ~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 123 HNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred cccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 43211 11122 2346678999999999999999999987654
No 289
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.68 E-value=3.2e-16 Score=149.91 Aligned_cols=147 Identities=19% Similarity=0.260 Sum_probs=96.6
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEec-CeeEEEEecCCcccccCCchhhhhhhhhhhcccC
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG-EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~-~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (693)
+|+++|.+|||||||++++.+...... .|.. ......+.+. ...+.+|||||....
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~--~~t~--~~~~~~~~~~~~~~l~i~D~~G~~~~------------------- 57 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT--IPTV--GFNVEMLQLEKHLSLTVWDVGGQEKM------------------- 57 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc--cCcc--CcceEEEEeCCceEEEEEECCCCHhH-------------------
Confidence 489999999999999999998864322 2222 1222333333 467999999998531
Q ss_pred CCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCH--HHHHHHHHHHh-hcCCCcEEEEecccCCccch-
Q 005504 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTA--ADEEIADWLRK-NYMDKFIILAVNKCESPRKG- 319 (693)
Q Consensus 244 ~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~--~d~~i~~~L~~-~~~~~p~ivv~NK~D~~~~~- 319 (693)
...+..++..+|+++||+|++++.+. ....+.+.++. ...+.|+++|+||+|+....
T Consensus 58 -------------------~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 118 (160)
T cd04156 58 -------------------RTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALT 118 (160)
T ss_pred -------------------HHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcC
Confidence 12334567889999999999875422 22233334332 12478999999999986421
Q ss_pred hhhHHHHHh-------cCCCCccccccCCCCHHHHHHHHHh
Q 005504 320 IMQVSEFWS-------LGFSPLPISAISGTGTGELLDLVCS 353 (693)
Q Consensus 320 ~~~~~~~~~-------~g~~~v~iSA~~g~gi~~Ll~~i~~ 353 (693)
......... .+..++++||++|.|++++++.|.+
T Consensus 119 ~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 119 AEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 111111111 1224789999999999999998864
No 290
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.68 E-value=5.5e-16 Score=149.48 Aligned_cols=151 Identities=19% Similarity=0.170 Sum_probs=99.1
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEe--cCeeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW--GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~--~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (693)
.+|+++|.+|||||||++++++... .....+. +.......... ....+.+|||||...+.
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f-~~~~~~t-~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------------- 63 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTF-RESYIPT-IEDTYRQVISCSKNICTLQITDTTGSHQFP---------------- 63 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CCCcCCc-chheEEEEEEECCEEEEEEEEECCCCCcch----------------
Confidence 4799999999999999999998752 1111221 11111112222 33568899999986421
Q ss_pred cCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHH-HHHHHHHHhh----cCCCcEEEEecccCCc
Q 005504 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN----YMDKFIILAVNKCESP 316 (693)
Q Consensus 242 ~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d-~~i~~~L~~~----~~~~p~ivv~NK~D~~ 316 (693)
.....++..+|++++|+|..+..+... ..+.+++++. ..+.|+++|+||+|+.
T Consensus 64 ----------------------~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (165)
T cd04140 64 ----------------------AMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDES 121 (165)
T ss_pred ----------------------HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccc
Confidence 122355678999999999987655433 2344445442 1468999999999986
Q ss_pred cchhhh---H-HHHHhcCCCCccccccCCCCHHHHHHHHHhh
Q 005504 317 RKGIMQ---V-SEFWSLGFSPLPISAISGTGTGELLDLVCSE 354 (693)
Q Consensus 317 ~~~~~~---~-~~~~~~g~~~v~iSA~~g~gi~~Ll~~i~~~ 354 (693)
...... . ......+..++++||++|.|++++++.|..+
T Consensus 122 ~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 122 HKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred ccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHhc
Confidence 522111 1 1122345578999999999999999998753
No 291
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.68 E-value=3.6e-16 Score=157.67 Aligned_cols=153 Identities=21% Similarity=0.298 Sum_probs=105.2
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCcee------------------cCCCCcccceEEEEEeC----CCCCeEEEEeCcc
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIV------------------SPISGTTRDAIDTEFTG----PEGQKFRLIDTAG 429 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v------------------~~~~gtT~d~~~~~~~~----~~g~~i~liDTpG 429 (693)
++|+++|++|+|||||+++|++...... ....|+|.......+.+ .....+.+|||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 3799999999999999999986433221 01124554443333322 1235789999999
Q ss_pred ccchhhhccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCC-------c
Q 005504 430 IRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPN-------K 502 (693)
Q Consensus 430 ~~~~~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~-------~ 502 (693)
+.++. ..+..++..+|++|+|+|+.++.+.+...+++.+...++|+++|+||+|++.. +
T Consensus 81 ~~~f~--------------~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~l~~~~ 146 (213)
T cd04167 81 HVNFM--------------DEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPND 146 (213)
T ss_pred CcchH--------------HHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCcccccCCHHH
Confidence 97652 23455788999999999999988888878888887788999999999998621 1
Q ss_pred chhhHHHHHHHHHHHHhcCCC------Cc----EEEeccccCCCHH
Q 005504 503 NQQTATYYEQDVREKLRALDW------AP----IVYSTAIAGQSVD 538 (693)
Q Consensus 503 ~~~~~~~~~~~i~~~l~~~~~------~p----iv~iSA~~g~gv~ 538 (693)
......+..+.+...+..+.. .| +++.||+.|+++.
T Consensus 147 ~~~~l~~~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~ 192 (213)
T cd04167 147 AYFKLRHIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFT 192 (213)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEe
Confidence 112233344444444433322 44 8999999999875
No 292
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.68 E-value=1.9e-15 Score=172.94 Aligned_cols=156 Identities=18% Similarity=0.238 Sum_probs=121.7
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceee---------------ecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCc
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAI---------------VVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQ 228 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~---------------v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~ 228 (693)
..|+|+||+++|||||+++|+.....+ .....|+|.......+.|.+..+.+|||||+.++
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF---- 77 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADF---- 77 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHH----
Confidence 479999999999999999998532111 1123478888888888999999999999999652
Q ss_pred hhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEE
Q 005504 229 PNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIIL 308 (693)
Q Consensus 229 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~iv 308 (693)
...+.++++.+|++++|+|+..|...++..++..+.. .+.|+|+
T Consensus 78 ----------------------------------~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~--~~ip~IV 121 (594)
T TIGR01394 78 ----------------------------------GGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALE--LGLKPIV 121 (594)
T ss_pred ----------------------------------HHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHH--CCCCEEE
Confidence 2345678899999999999999999999888888877 5789999
Q ss_pred EecccCCccchhhh----HHHHH--------hcCCCCccccccCCC----------CHHHHHHHHHhhccccc
Q 005504 309 AVNKCESPRKGIMQ----VSEFW--------SLGFSPLPISAISGT----------GTGELLDLVCSELKKVE 359 (693)
Q Consensus 309 v~NK~D~~~~~~~~----~~~~~--------~~g~~~v~iSA~~g~----------gi~~Ll~~i~~~l~~~~ 359 (693)
|+||+|+....... ..+++ .+.++++++||.+|. |+..|++.|.+.++...
T Consensus 122 viNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~ 194 (594)
T TIGR01394 122 VINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK 194 (594)
T ss_pred EEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCC
Confidence 99999986532211 11222 124578999999996 89999999999998653
No 293
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.68 E-value=3.7e-16 Score=173.73 Aligned_cols=155 Identities=21% Similarity=0.250 Sum_probs=119.3
Q ss_pred CCcEEEeecCCCCChhhHHHHHhcCCCce------------------------------ecCCCCcccceEEEEEeCCCC
Q 005504 370 RIPAIAIVGRPNVGKSSILNALVGEDRTI------------------------------VSPISGTTRDAIDTEFTGPEG 419 (693)
Q Consensus 370 ~~~~I~ivG~~n~GKSSLin~llg~~~~~------------------------------v~~~~gtT~d~~~~~~~~~~g 419 (693)
+..+|+++|+.++|||||+.+|+.....+ ..-..|+|.+.....+.. ++
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~-~~ 84 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PK 84 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc-CC
Confidence 44799999999999999999997421110 011238888887777774 78
Q ss_pred CeEEEEeCccccchhhhccCCChhhHhHHHHHHHHHhcCCeEEEEecccccC-------CHHHHHHHHHHHHhCCc-EEE
Q 005504 420 QKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACI-------TEQDCRIAERIEQEGKG-CLI 491 (693)
Q Consensus 420 ~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~-------~~~d~~~~~~l~~~~~p-~Iv 491 (693)
..+.|+||||+.+| +..+...+..+|++++|+|+..|. ..|..+.+..+...|+| +|+
T Consensus 85 ~~i~lIDtPGh~~f--------------~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv 150 (446)
T PTZ00141 85 YYFTIIDAPGHRDF--------------IKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIV 150 (446)
T ss_pred eEEEEEECCChHHH--------------HHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEE
Confidence 89999999998765 345667789999999999999886 36888888888899987 679
Q ss_pred EEeccCCCC-CcchhhHHHHHHHHHHHHhcCCC----CcEEEeccccCCCHHH
Q 005504 492 VVNKWDTIP-NKNQQTATYYEQDVREKLRALDW----APIVYSTAIAGQSVDK 539 (693)
Q Consensus 492 v~NK~Dl~~-~~~~~~~~~~~~~i~~~l~~~~~----~piv~iSA~~g~gv~~ 539 (693)
++||||... ......++++.+++.+.+...++ +|+|++||.+|.|+.+
T Consensus 151 ~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 151 CINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred EEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 999999532 12334566777788877776543 7899999999999864
No 294
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.68 E-value=8.5e-16 Score=150.21 Aligned_cols=154 Identities=19% Similarity=0.166 Sum_probs=102.5
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCC--CeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
.||+++|.+|||||||++++++.. . ...+.+++.+.....+.. ++ ..+.+|||||+.++...
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~-~-~~~~~~t~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~------------- 65 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGH-F-VESYYPTIENTFSKIIRY-KGQDYHLEIVDTAGQDEYSIL------------- 65 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-C-ccccCcchhhhEEEEEEE-CCEEEEEEEEECCChHhhHHH-------------
Confidence 589999999999999999999754 2 333444544433333443 33 35789999998664221
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHHH-HHHHHHH----hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~~-~~~~l~~----~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~ 524 (693)
....+..+|++++|+|.++..+.+... ++..+.+ .+.|+|+|+||+|+....... .... ..+. ... ..
T Consensus 66 -~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~-~~~~-~~~~---~~~-~~ 138 (180)
T cd04137 66 -PQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVS-TEEG-KELA---ESW-GA 138 (180)
T ss_pred -HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccC-HHHH-HHHH---HHc-CC
Confidence 123567899999999998865444432 3333333 467999999999986432211 1111 1121 222 36
Q ss_pred cEEEeccccCCCHHHHHHHHHHHH
Q 005504 525 PIVYSTAIAGQSVDKIIVAAEMVD 548 (693)
Q Consensus 525 piv~iSA~~g~gv~~L~~~i~~~~ 548 (693)
+++++||++|.|+.+++.++.+..
T Consensus 139 ~~~~~Sa~~~~gv~~l~~~l~~~~ 162 (180)
T cd04137 139 AFLESSARENENVEEAFELLIEEI 162 (180)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 899999999999999999997653
No 295
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.68 E-value=6.3e-16 Score=151.05 Aligned_cols=153 Identities=16% Similarity=0.154 Sum_probs=102.2
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEec------------CeeEEEEecCCcccccCCchhh
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG------------EHEFMLVDTGGVLNVSKSQPNI 231 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~------------~~~~~lvDTpG~~~~~~~~~~~ 231 (693)
.+|+++|.+|||||||++++.+.. ......+.++.+.....+.+. ...+.+|||||....
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------- 76 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNK-FNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERF------- 76 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC-CCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHH-------
Confidence 579999999999999999999765 222223333333333333332 256899999997531
Q ss_pred hhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH-HHHHHHHhh--cCCCcEEE
Q 005504 232 MEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIIL 308 (693)
Q Consensus 232 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~-~i~~~L~~~--~~~~p~iv 308 (693)
......+++.+|++++|+|..+.-+..+. .++..+... ..+.|+++
T Consensus 77 -------------------------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piii 125 (180)
T cd04127 77 -------------------------------RSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVL 125 (180)
T ss_pred -------------------------------HHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 13344677899999999999865443332 222233221 13678999
Q ss_pred EecccCCccchhh---hHHHH-HhcCCCCccccccCCCCHHHHHHHHHhhc
Q 005504 309 AVNKCESPRKGIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (693)
Q Consensus 309 v~NK~D~~~~~~~---~~~~~-~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l 355 (693)
|+||+|+...... ...++ ...+.+++++||++|.|++++++.|.+.+
T Consensus 126 v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 126 CGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred EEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9999998653211 12222 23566889999999999999999998755
No 296
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.68 E-value=8.8e-16 Score=144.70 Aligned_cols=154 Identities=29% Similarity=0.395 Sum_probs=115.1
Q ss_pred EEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEec-CeeEEEEecCCcccccCCchhhhhhhhhhhcccCCCC
Q 005504 168 IVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG-EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGI 246 (693)
Q Consensus 168 ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~-~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~g~ 246 (693)
++|++|+|||||+|+|++.........+++|.........+. +..+.+|||||+.........
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~---------------- 64 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRE---------------- 64 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhh----------------
Confidence 589999999999999999876657778888888877776665 678999999999764322110
Q ss_pred chhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCccchhhhHH--
Q 005504 247 PLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVS-- 324 (693)
Q Consensus 247 ~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~~~~~~-- 324 (693)
....+...+..+|++++|+|+..+.......+...... .+.|+++|+||+|+.........
T Consensus 65 ---------------~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~ 127 (163)
T cd00880 65 ---------------REELARRVLERADLILFVVDADLRADEEEEKLLELLRE--RGKPVLLVLNKIDLLPEEEEEELLE 127 (163)
T ss_pred ---------------HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh--cCCeEEEEEEccccCChhhHHHHHH
Confidence 11345567889999999999999877766664444444 58899999999998764322211
Q ss_pred ---H--HHhcCCCCccccccCCCCHHHHHHHHHhh
Q 005504 325 ---E--FWSLGFSPLPISAISGTGTGELLDLVCSE 354 (693)
Q Consensus 325 ---~--~~~~g~~~v~iSA~~g~gi~~Ll~~i~~~ 354 (693)
. ....+.+++++||.++.|+.++++.+.+.
T Consensus 128 ~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 128 LRLLILLLLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred HHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 1 11123478999999999999999998764
No 297
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.68 E-value=6.4e-16 Score=148.34 Aligned_cols=152 Identities=21% Similarity=0.170 Sum_probs=102.2
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCe--eEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (693)
.+|+++|.+|||||||++++.+... ...+.++..+.....+..++. .+.+|||||...+.
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------------- 63 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTF--IEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA---------------- 63 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCchhheEEEEEEECCEEEEEEEEECCCccccc----------------
Confidence 3799999999999999999997642 223333333444445556664 47789999986422
Q ss_pred cCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH-HHHHHHHhh--cCCCcEEEEecccCCccc
Q 005504 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESPRK 318 (693)
Q Consensus 242 ~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~-~i~~~L~~~--~~~~p~ivv~NK~D~~~~ 318 (693)
.....++.++|++++|+|..+.-+..+. .+...+.+. ..+.|+++|+||+|+...
T Consensus 64 ----------------------~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~ 121 (163)
T cd04176 64 ----------------------SMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESE 121 (163)
T ss_pred ----------------------chHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhc
Confidence 1222467889999999999875443322 233333331 147899999999998543
Q ss_pred hhh---hHHHH-HhcCCCCccccccCCCCHHHHHHHHHhhc
Q 005504 319 GIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (693)
Q Consensus 319 ~~~---~~~~~-~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l 355 (693)
... ....+ ...+.+++++||++|.|+.+++..+.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 122 REVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred CccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHhc
Confidence 211 11111 23456789999999999999999998654
No 298
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.68 E-value=9.5e-16 Score=145.19 Aligned_cols=152 Identities=16% Similarity=0.113 Sum_probs=98.8
Q ss_pred EEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHHHHH
Q 005504 374 IAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFR 453 (693)
Q Consensus 374 I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~ 453 (693)
|+++|++|||||||+|+|.+.... ....+++..+... +.. ++..+.+|||||+.++.. ....
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~--~~~-~~~~~~~~D~~g~~~~~~--------------~~~~ 63 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFS-EDTIPTVGFNMRK--VTK-GNVTLKVWDLGGQPRFRS--------------MWER 63 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCC-cCccCCCCcceEE--EEE-CCEEEEEEECCCCHhHHH--------------HHHH
Confidence 799999999999999999987532 3334433333322 332 456899999999865422 1234
Q ss_pred HHhcCCeEEEEecccccCCHHH-HHHHHHHHH----hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcEEE
Q 005504 454 AIRRSDVVALVIEAMACITEQD-CRIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVY 528 (693)
Q Consensus 454 ~i~~aDvvllViDa~~~~~~~d-~~~~~~l~~----~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~piv~ 528 (693)
+++.+|++++|+|+++..+... ..++..+.. .++|+++|+||+|+...... ..+...+..........++++
T Consensus 64 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 140 (159)
T cd04159 64 YCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSV---DELIEQMNLKSITDREVSCYS 140 (159)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCH---HHHHHHhCcccccCCceEEEE
Confidence 5789999999999986432221 223333322 47899999999998653221 111111111111112367999
Q ss_pred eccccCCCHHHHHHHHHH
Q 005504 529 STAIAGQSVDKIIVAAEM 546 (693)
Q Consensus 529 iSA~~g~gv~~L~~~i~~ 546 (693)
+||++|.|++++++.+.+
T Consensus 141 ~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 141 ISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred EEeccCCChHHHHHHHhh
Confidence 999999999999998864
No 299
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.68 E-value=5.6e-16 Score=151.03 Aligned_cols=148 Identities=20% Similarity=0.272 Sum_probs=100.7
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhcccC
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (693)
.+|+++|.+|+|||||+++|.+...... .| |.........+.+..+.+|||||...+
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~l~D~~G~~~~------------------- 72 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLGEVVHT--SP--TIGSNVEEIVYKNIRFLMWDIGGQESL------------------- 72 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCCCc--CC--ccccceEEEEECCeEEEEEECCCCHHH-------------------
Confidence 5799999999999999999987653322 22 333334556677889999999998531
Q ss_pred CCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHH--HHHHHHHHHhh-cCCCcEEEEecccCCccch-
Q 005504 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA--DEEIADWLRKN-YMDKFIILAVNKCESPRKG- 319 (693)
Q Consensus 244 ~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~--d~~i~~~L~~~-~~~~p~ivv~NK~D~~~~~- 319 (693)
......+++.+|+++||+|++++.... ..++.+.+... ..+.|+++++||+|+....
T Consensus 73 -------------------~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~ 133 (174)
T cd04153 73 -------------------RSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMT 133 (174)
T ss_pred -------------------HHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCC
Confidence 133446678999999999998753221 22333333321 1368999999999986521
Q ss_pred hhhHHHHHh------cCCCCccccccCCCCHHHHHHHHHh
Q 005504 320 IMQVSEFWS------LGFSPLPISAISGTGTGELLDLVCS 353 (693)
Q Consensus 320 ~~~~~~~~~------~g~~~v~iSA~~g~gi~~Ll~~i~~ 353 (693)
......... .++.++++||.+|.|++++++.|.+
T Consensus 134 ~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 134 PAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred HHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHHhc
Confidence 111111111 2235789999999999999998864
No 300
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.67 E-value=5.2e-16 Score=150.09 Aligned_cols=153 Identities=16% Similarity=0.099 Sum_probs=99.8
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEe--cCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW--GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~--~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (693)
+|+++|.+|||||||+++++.... .....+....+.....+.. ....+.+|||||.......
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------------- 65 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEF-EKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGL--------------- 65 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccc---------------
Confidence 699999999999999999986541 1111121112222222222 3357899999998642211
Q ss_pred CCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH-HHHHHHHhhcCCCcEEEEecccCCccchhh
Q 005504 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRKGIM 321 (693)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~-~i~~~L~~~~~~~p~ivv~NK~D~~~~~~~ 321 (693)
....+..+|++++|+|.+++.+.+.. .+.+.+.+...+.|+++|+||+|+......
T Consensus 66 -----------------------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~ 122 (166)
T cd00877 66 -----------------------RDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVK 122 (166)
T ss_pred -----------------------cHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCC
Confidence 11345679999999999876544332 233444443337999999999998743321
Q ss_pred -hHHHHH-hcCCCCccccccCCCCHHHHHHHHHhhcc
Q 005504 322 -QVSEFW-SLGFSPLPISAISGTGTGELLDLVCSELK 356 (693)
Q Consensus 322 -~~~~~~-~~g~~~v~iSA~~g~gi~~Ll~~i~~~l~ 356 (693)
....+. ..+..++++||++|.|++++++.|.+.+.
T Consensus 123 ~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~ 159 (166)
T cd00877 123 AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLL 159 (166)
T ss_pred HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHHH
Confidence 122232 23457899999999999999999987664
No 301
>PTZ00369 Ras-like protein; Provisional
Probab=99.67 E-value=8e-16 Score=152.06 Aligned_cols=156 Identities=18% Similarity=0.165 Sum_probs=103.4
Q ss_pred CCeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005504 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (693)
Q Consensus 163 ~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~ 240 (693)
..+|+++|.+|||||||++++.+... ...+..++.+.....+.+++ ..+.+|||||.....
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------------- 67 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHF--IDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYS--------------- 67 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC--CcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccch---------------
Confidence 36899999999999999999998652 22222222222233344555 457789999986522
Q ss_pred ccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH-HHHHHHHhh--cCCCcEEEEecccCCcc
Q 005504 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESPR 317 (693)
Q Consensus 241 ~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~-~i~~~L~~~--~~~~p~ivv~NK~D~~~ 317 (693)
.....++..+|++++|+|+++..+..+. .+.+.+.+. ..+.|+++|+||+|+..
T Consensus 68 -----------------------~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 124 (189)
T PTZ00369 68 -----------------------AMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDS 124 (189)
T ss_pred -----------------------hhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 2223567789999999999876443222 222233221 13679999999999864
Q ss_pred chhh---hHHHH-HhcCCCCccccccCCCCHHHHHHHHHhhcccc
Q 005504 318 KGIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (693)
Q Consensus 318 ~~~~---~~~~~-~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l~~~ 358 (693)
.... ....+ ..++.+++++||.+|.|+.++++.|.+.+.+.
T Consensus 125 ~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l~~~l~~~ 169 (189)
T PTZ00369 125 ERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIRKY 169 (189)
T ss_pred ccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 3211 11122 23456789999999999999999998776543
No 302
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.67 E-value=8.4e-16 Score=149.59 Aligned_cols=154 Identities=12% Similarity=0.088 Sum_probs=106.7
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (693)
.+|+++|.+|||||||++++++... ...+..+..+.....+.+++ ..+.+|||||....
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------------- 63 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSF--PDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEF----------------- 63 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC--CCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhh-----------------
Confidence 4799999999999999999997652 22233333333344456666 45889999998542
Q ss_pred cCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHH-HHHHHHhh--cCCCcEEEEecccCCccc
Q 005504 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE-IADWLRKN--YMDKFIILAVNKCESPRK 318 (693)
Q Consensus 242 ~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~-i~~~L~~~--~~~~p~ivv~NK~D~~~~ 318 (693)
......++..+|++++|+|..+..+..... +.+.+.+. ..+.|+++|+||+|+...
T Consensus 64 ---------------------~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~ 122 (172)
T cd04141 64 ---------------------TAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQ 122 (172)
T ss_pred ---------------------HHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhc
Confidence 122335677899999999999876665542 33444431 246899999999998643
Q ss_pred hhhh---HHHH-HhcCCCCccccccCCCCHHHHHHHHHhhccc
Q 005504 319 GIMQ---VSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (693)
Q Consensus 319 ~~~~---~~~~-~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l~~ 357 (693)
.... ...+ ...+.+++++||++|.|++++++.+...+-+
T Consensus 123 ~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 165 (172)
T cd04141 123 RQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLVREIRR 165 (172)
T ss_pred CccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 2211 1122 2356788999999999999999999876543
No 303
>PRK12739 elongation factor G; Reviewed
Probab=99.67 E-value=7.9e-16 Score=180.46 Aligned_cols=116 Identities=22% Similarity=0.253 Sum_probs=97.8
Q ss_pred CCcEEEeecCCCCChhhHHHHHhcCCCc-----eec------------CCCCcccceEEEEEeCCCCCeEEEEeCccccc
Q 005504 370 RIPAIAIVGRPNVGKSSILNALVGEDRT-----IVS------------PISGTTRDAIDTEFTGPEGQKFRLIDTAGIRK 432 (693)
Q Consensus 370 ~~~~I~ivG~~n~GKSSLin~llg~~~~-----~v~------------~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~ 432 (693)
+.++|+|+|++|+|||||+|+|+..... .+. ...|+|++.....+.+ ++..+.+|||||+.+
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~~ 85 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KGHRINIIDTPGHVD 85 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE-CCEEEEEEcCCCHHH
Confidence 4579999999999999999999753211 122 2558999988888875 788999999999865
Q ss_pred hhhhccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCC
Q 005504 433 RAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIP 500 (693)
Q Consensus 433 ~~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~ 500 (693)
+ ...+.++++.+|++|+|+|+..+...++..++..+...++|+|+++||||+..
T Consensus 86 f--------------~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 86 F--------------TIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIG 139 (691)
T ss_pred H--------------HHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 3 12467788999999999999999999999999999999999999999999875
No 304
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=3.5e-16 Score=150.48 Aligned_cols=158 Identities=18% Similarity=0.189 Sum_probs=115.6
Q ss_pred cCCcEEEeecCCCCChhhHHHHHhcCCCce-ecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhH
Q 005504 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTI-VSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALS 447 (693)
Q Consensus 369 ~~~~~I~ivG~~n~GKSSLin~llg~~~~~-v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~ 447 (693)
...+||+++|.+|||||-|+.++...+... .....|+........+.. +-.+.++|||+|++|++.+.+
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~-k~vkaqIWDTAGQERyrAitS--------- 81 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDG-KTVKAQIWDTAGQERYRAITS--------- 81 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecC-cEEEEeeecccchhhhccccc---------
Confidence 456899999999999999999999654332 223334444333333321 223789999999999865542
Q ss_pred HHHHHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHHh---CCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005504 448 VNRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (693)
Q Consensus 448 ~~~~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~~---~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~ 523 (693)
.+++.|..+++|+|.+...+.+.. +|+.+++++ ++++++|+||+||..-+... .+-.+.++...+
T Consensus 82 -----aYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~------te~~k~~Ae~~~ 150 (222)
T KOG0087|consen 82 -----AYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVP------TEDGKAFAEKEG 150 (222)
T ss_pred -----hhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccc------hhhhHhHHHhcC
Confidence 267999999999999998888775 599999875 78999999999996532211 122334445556
Q ss_pred CcEEEeccccCCCHHHHHHHHHHH
Q 005504 524 APIVYSTAIAGQSVDKIIVAAEMV 547 (693)
Q Consensus 524 ~piv~iSA~~g~gv~~L~~~i~~~ 547 (693)
..++++||+.+.||++.|..+...
T Consensus 151 l~f~EtSAl~~tNVe~aF~~~l~~ 174 (222)
T KOG0087|consen 151 LFFLETSALDATNVEKAFERVLTE 174 (222)
T ss_pred ceEEEecccccccHHHHHHHHHHH
Confidence 889999999999999999776543
No 305
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.67 E-value=6e-16 Score=154.23 Aligned_cols=149 Identities=13% Similarity=0.097 Sum_probs=101.2
Q ss_pred ecCCCCChhhHHHHHhcCCCc-eecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHHHHHHH
Q 005504 377 VGRPNVGKSSILNALVGEDRT-IVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAI 455 (693)
Q Consensus 377 vG~~n~GKSSLin~llg~~~~-~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i 455 (693)
+|.+|||||||+++++..... ...+..|.+.......+.. ....+.+|||||..++..+. ..++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~-~~~~l~iwDt~G~e~~~~l~--------------~~~~ 65 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR-GPIRFNVWDTAGQEKFGGLR--------------DGYY 65 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECC-EEEEEEEEECCCchhhhhhh--------------HHHh
Confidence 699999999999999964321 1222333333322222221 23589999999997754322 2367
Q ss_pred hcCCeEEEEecccccCCHHHH-HHHHHHHH--hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcEEEeccc
Q 005504 456 RRSDVVALVIEAMACITEQDC-RIAERIEQ--EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAI 532 (693)
Q Consensus 456 ~~aDvvllViDa~~~~~~~d~-~~~~~l~~--~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~piv~iSA~ 532 (693)
+.+|++|+|+|+++..+.+.. .|+..+.+ .+.|+++|+||+|+... ... .+. + .+.....++++++||+
T Consensus 66 ~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~-~v~-~~~----~--~~~~~~~~~~~e~SAk 137 (200)
T smart00176 66 IQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDR-KVK-AKS----I--TFHRKKNLQYYDISAK 137 (200)
T ss_pred cCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc-cCC-HHH----H--HHHHHcCCEEEEEeCC
Confidence 899999999999987666554 46676765 47899999999998532 111 111 1 1122235789999999
Q ss_pred cCCCHHHHHHHHHHHH
Q 005504 533 AGQSVDKIIVAAEMVD 548 (693)
Q Consensus 533 ~g~gv~~L~~~i~~~~ 548 (693)
+|.||+++|..+.+..
T Consensus 138 ~~~~v~~~F~~l~~~i 153 (200)
T smart00176 138 SNYNFEKPFLWLARKL 153 (200)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999997654
No 306
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.67 E-value=2.6e-16 Score=175.03 Aligned_cols=144 Identities=24% Similarity=0.290 Sum_probs=107.7
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeec------------------------------CCCCceeeeEEEEEEecCeeE
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVV------------------------------DEPGVTRDRMYGRSFWGEHEF 213 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~------------------------------~~~~~T~~~~~~~~~~~~~~~ 213 (693)
.+|+++||+|+|||||+++|+.....+.. ..+|+|++.....+.+++..+
T Consensus 7 ~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~~i 86 (425)
T PRK12317 7 LNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKYYF 86 (425)
T ss_pred EEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCeEE
Confidence 57999999999999999999854322211 157999999999999999999
Q ss_pred EEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCC--CCCHHHH
Q 005504 214 MLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA--GLTAADE 291 (693)
Q Consensus 214 ~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~--~~~~~d~ 291 (693)
.+|||||+..+. +.+...+..+|++|+|+|+.+ +...++.
T Consensus 87 ~liDtpG~~~~~--------------------------------------~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~ 128 (425)
T PRK12317 87 TIVDCPGHRDFV--------------------------------------KNMITGASQADAAVLVVAADDAGGVMPQTR 128 (425)
T ss_pred EEEECCCcccch--------------------------------------hhHhhchhcCCEEEEEEEcccCCCCCcchH
Confidence 999999985421 223345678999999999998 8888887
Q ss_pred HHHHHHHhhcCCCcEEEEecccCCccchhh-------hHHHHH-hcCC-----CCccccccCCCCHHH
Q 005504 292 EIADWLRKNYMDKFIILAVNKCESPRKGIM-------QVSEFW-SLGF-----SPLPISAISGTGTGE 346 (693)
Q Consensus 292 ~i~~~L~~~~~~~p~ivv~NK~D~~~~~~~-------~~~~~~-~~g~-----~~v~iSA~~g~gi~~ 346 (693)
+.+.+++.. ...|+++|+||+|+...... ....+. ..++ +++++||.+|.|+++
T Consensus 129 ~~~~~~~~~-~~~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 129 EHVFLARTL-GINQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK 195 (425)
T ss_pred HHHHHHHHc-CCCeEEEEEEccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccc
Confidence 777777653 22469999999999742111 111222 2343 579999999999986
No 307
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.67 E-value=1.1e-15 Score=147.62 Aligned_cols=153 Identities=16% Similarity=0.133 Sum_probs=102.9
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCe--eEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (693)
+|+++|++|+|||||+|+|++.+. .....+..+.+.......+.+. .+.+|||||....
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~------------------ 62 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERF------------------ 62 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHH------------------
Confidence 699999999999999999998763 2233333444444445566664 4679999997531
Q ss_pred CCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH-HHHHH-HHhh----cCCCcEEEEecccCCc
Q 005504 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADW-LRKN----YMDKFIILAVNKCESP 316 (693)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~-~i~~~-L~~~----~~~~p~ivv~NK~D~~ 316 (693)
.......++.+|++|+|+|+.++.+.... .+.+. +... ..+.|+++|+||+|+.
T Consensus 63 --------------------~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (172)
T cd01862 63 --------------------QSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLE 122 (172)
T ss_pred --------------------HhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccc
Confidence 12334667889999999999875443222 12222 2221 1268999999999997
Q ss_pred cchh---hhHHHH-HhcC-CCCccccccCCCCHHHHHHHHHhhcc
Q 005504 317 RKGI---MQVSEF-WSLG-FSPLPISAISGTGTGELLDLVCSELK 356 (693)
Q Consensus 317 ~~~~---~~~~~~-~~~g-~~~v~iSA~~g~gi~~Ll~~i~~~l~ 356 (693)
.... .....+ ...+ ..++++||.+|.|++++++.|.+.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~ 167 (172)
T cd01862 123 EKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIARKAL 167 (172)
T ss_pred cccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3211 111222 2344 47999999999999999999987654
No 308
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.67 E-value=1.3e-15 Score=146.23 Aligned_cols=149 Identities=14% Similarity=0.137 Sum_probs=99.8
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCC--CeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
.+|+++|.+|||||||+.+++..... ..++ ++.......+.. +| ..+.+|||+|..+.
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~--~~~~-~~~~~~~~~i~~-~~~~~~l~i~D~~g~~~~---------------- 60 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYV--QLES-PEGGRFKKEVLV-DGQSHLLLIRDEGGAPDA---------------- 60 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCC--CCCC-CCccceEEEEEE-CCEEEEEEEEECCCCCch----------------
Confidence 37999999999999999998864322 1122 122222233443 45 35889999998431
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHHh----CCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~~----~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~ 524 (693)
.+++.+|++++|+|.++..+.+.. .|+..+... +.|+++|+||+|+..........+ ...+.......+
T Consensus 61 ---~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~---~~~~~~~~~~~~ 134 (158)
T cd04103 61 ---QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDA---RARQLCADMKRC 134 (158)
T ss_pred ---hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHH---HHHHHHHHhCCC
Confidence 145789999999999998777773 566666543 479999999999843111111111 111122223347
Q ss_pred cEEEeccccCCCHHHHHHHHHH
Q 005504 525 PIVYSTAIAGQSVDKIIVAAEM 546 (693)
Q Consensus 525 piv~iSA~~g~gv~~L~~~i~~ 546 (693)
+++++||++|.||+++|..+.+
T Consensus 135 ~~~e~SAk~~~~i~~~f~~~~~ 156 (158)
T cd04103 135 SYYETCATYGLNVERVFQEAAQ 156 (158)
T ss_pred cEEEEecCCCCCHHHHHHHHHh
Confidence 8999999999999999998864
No 309
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.67 E-value=5.7e-16 Score=152.35 Aligned_cols=154 Identities=19% Similarity=0.200 Sum_probs=99.8
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEe---cCeeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW---GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~---~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~ 240 (693)
.+|+++|.+|||||||++++.+... +...|..+.+.....+.. .+..+.+|||||...+
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~---------------- 65 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEF--VNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKL---------------- 65 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCc--CCcCCccccceeEEEeeccCCCceEEEEEECCCcHhH----------------
Confidence 4799999999999999999987653 233343322332222322 4578999999997531
Q ss_pred ccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH--HHHHHHHh-hcCCCcEEEEecccCCcc
Q 005504 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRK-NYMDKFIILAVNKCESPR 317 (693)
Q Consensus 241 ~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~--~i~~~L~~-~~~~~p~ivv~NK~D~~~ 317 (693)
...+..+++.+|++++|+|+++.-+.... .+.+++.. ...++|+++|+||+|+..
T Consensus 66 ----------------------~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 66 ----------------------RPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN 123 (183)
T ss_pred ----------------------HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc
Confidence 12334567889999999998875332221 11122211 114789999999999864
Q ss_pred ch-hhhHHHHHh---c----CCCCccccccCCCCHHHHHHHHHhhccc
Q 005504 318 KG-IMQVSEFWS---L----GFSPLPISAISGTGTGELLDLVCSELKK 357 (693)
Q Consensus 318 ~~-~~~~~~~~~---~----g~~~v~iSA~~g~gi~~Ll~~i~~~l~~ 357 (693)
.. ......+.. . +..++++||++|.|+++|++.|.+.+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~~ 171 (183)
T cd04152 124 ALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMILK 171 (183)
T ss_pred cCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHHHH
Confidence 21 111122221 1 1246799999999999999999887753
No 310
>PLN03108 Rab family protein; Provisional
Probab=99.67 E-value=1.3e-15 Score=153.21 Aligned_cols=155 Identities=16% Similarity=0.094 Sum_probs=103.2
Q ss_pred CcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCC--CeEEEEeCccccchhhhccCCChhhHhHH
Q 005504 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (693)
Q Consensus 371 ~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (693)
.+||+++|.+|||||||+|+|++..... ...+....+.....+.. ++ ..+.+|||||..++..
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~-~~~~ti~~~~~~~~i~~-~~~~i~l~l~Dt~G~~~~~~------------- 70 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMITI-DNKPIKLQIWDTAGQESFRS------------- 70 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCCccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHH-------------
Confidence 4799999999999999999999764332 22222333322223332 33 3688999999865422
Q ss_pred HHHHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHH---hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005504 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (693)
Q Consensus 449 ~~~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~---~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~ 524 (693)
.....++.+|++|+|+|+++..+.+.. .|+..+.. .+.|+++|+||+|+....... .+ ...+.... .+.
T Consensus 71 -~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~-~~----~~~~~~~~-~~~ 143 (210)
T PLN03108 71 -ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS-TE----EGEQFAKE-HGL 143 (210)
T ss_pred -HHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCC-HH----HHHHHHHH-cCC
Confidence 123456889999999999886555544 35554443 368999999999996532211 11 11122222 246
Q ss_pred cEEEeccccCCCHHHHHHHHHHH
Q 005504 525 PIVYSTAIAGQSVDKIIVAAEMV 547 (693)
Q Consensus 525 piv~iSA~~g~gv~~L~~~i~~~ 547 (693)
+++++||++|.|++++|.++.+.
T Consensus 144 ~~~e~Sa~~~~~v~e~f~~l~~~ 166 (210)
T PLN03108 144 IFMEASAKTAQNVEEAFIKTAAK 166 (210)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHH
Confidence 89999999999999999887654
No 311
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.67 E-value=1e-15 Score=152.57 Aligned_cols=155 Identities=18% Similarity=0.186 Sum_probs=105.6
Q ss_pred CCeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005504 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (693)
Q Consensus 163 ~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~ 240 (693)
..+|+++|.+|||||||++++.+... .....++.+.+.....+.+++ ..+.||||||....
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~---------------- 68 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTF-SGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERF---------------- 68 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC-CCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhH----------------
Confidence 46899999999999999999998752 212223333333333444555 46889999997531
Q ss_pred ccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH-HHHHHHHhhcCCCcEEEEecccCCccch
Q 005504 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRKG 319 (693)
Q Consensus 241 ~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~-~i~~~L~~~~~~~p~ivv~NK~D~~~~~ 319 (693)
......++..+|++++|+|+++..+.++. .+++.++......|+++|+||+|+....
T Consensus 69 ----------------------~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~ 126 (199)
T cd04110 69 ----------------------RTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERK 126 (199)
T ss_pred ----------------------HHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccccc
Confidence 12334667889999999999875443322 2333444433468999999999986532
Q ss_pred h---hhHHHH-HhcCCCCccccccCCCCHHHHHHHHHhhcc
Q 005504 320 I---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (693)
Q Consensus 320 ~---~~~~~~-~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l~ 356 (693)
. .....+ ...+..++++||.+|.|+.++++.|.+.+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~~~~ 167 (199)
T cd04110 127 VVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVL 167 (199)
T ss_pred ccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHHHHH
Confidence 2 112222 234667899999999999999999987664
No 312
>PRK13796 GTPase YqeH; Provisional
Probab=99.67 E-value=5.1e-16 Score=168.49 Aligned_cols=145 Identities=28% Similarity=0.334 Sum_probs=105.6
Q ss_pred HHHHHHhcC-eEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCccchh--hhHHH-----HHhcCC---CCc
Q 005504 266 ATAAIEESC-VIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI--MQVSE-----FWSLGF---SPL 334 (693)
Q Consensus 266 ~~~~i~~ad-iil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~~--~~~~~-----~~~~g~---~~v 334 (693)
+...+..++ +|++|+|+.+........+.+++ .++|+++|+||+|+..... ..... +...|+ .++
T Consensus 62 ~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~ 137 (365)
T PRK13796 62 LLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVV 137 (365)
T ss_pred HHHhhcccCcEEEEEEECccCCCchhHHHHHHh----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEE
Confidence 445566666 99999999875544433443333 3689999999999964221 11111 223454 478
Q ss_pred cccccCCCCHHHHHHHHHhhcccccCccchhhhccCCcEEEeecCCCCChhhHHHHHhcC-----CCceecCCCCcccce
Q 005504 335 PISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGE-----DRTIVSPISGTTRDA 409 (693)
Q Consensus 335 ~iSA~~g~gi~~Ll~~i~~~l~~~~~~~~~~~~~~~~~~I~ivG~~n~GKSSLin~llg~-----~~~~v~~~~gtT~d~ 409 (693)
.+||.+|.|+++|++.|.+..+ ..++.++|.||||||||+|+|++. +...++..||||++.
T Consensus 138 ~vSAk~g~gI~eL~~~I~~~~~--------------~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~ 203 (365)
T PRK13796 138 LISAQKGHGIDELLEAIEKYRE--------------GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDK 203 (365)
T ss_pred EEECCCCCCHHHHHHHHHHhcC--------------CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCcccee
Confidence 9999999999999999976532 147999999999999999999854 234589999999998
Q ss_pred EEEEEeCCCCCeEEEEeCccccc
Q 005504 410 IDTEFTGPEGQKFRLIDTAGIRK 432 (693)
Q Consensus 410 ~~~~~~~~~g~~i~liDTpG~~~ 432 (693)
+...+. ++ ..++||||+..
T Consensus 204 ~~~~l~--~~--~~l~DTPGi~~ 222 (365)
T PRK13796 204 IEIPLD--DG--SFLYDTPGIIH 222 (365)
T ss_pred EEEEcC--CC--cEEEECCCccc
Confidence 776653 23 48999999965
No 313
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.67 E-value=9.5e-16 Score=147.90 Aligned_cols=150 Identities=17% Similarity=0.146 Sum_probs=101.7
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCce-eeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVT-RDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T-~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~ 240 (693)
.+|+++|.+|||||||++++.+.+. ...++.++ .+.....+.+++ ..+.+|||||...+
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---------------- 64 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKF--MADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERF---------------- 64 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHH----------------
Confidence 4799999999999999999998752 23333322 222223344555 45789999997531
Q ss_pred ccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHh---h-cCCCcEEEEecccCCc
Q 005504 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRK---N-YMDKFIILAVNKCESP 316 (693)
Q Consensus 241 ~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~---~-~~~~p~ivv~NK~D~~ 316 (693)
......+++.+|++++|+|.++..+.. .+.+|+.. . ..+.|+++|+||+|+.
T Consensus 65 ----------------------~~~~~~~~~~~~~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~ 120 (166)
T cd04122 65 ----------------------RAVTRSYYRGAAGALMVYDITRRSTYN--HLSSWLTDARNLTNPNTVIFLIGNKADLE 120 (166)
T ss_pred ----------------------HHHHHHHhcCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 123346678999999999998754332 23344432 1 2467899999999986
Q ss_pred cchhh---hHHH-HHhcCCCCccccccCCCCHHHHHHHHHhhc
Q 005504 317 RKGIM---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (693)
Q Consensus 317 ~~~~~---~~~~-~~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l 355 (693)
.+... .... ....+..++++||++|.|+.+++..+...+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 121 AQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKI 163 (166)
T ss_pred cccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 54221 1122 223466789999999999999998887655
No 314
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.67 E-value=2.1e-15 Score=154.73 Aligned_cols=163 Identities=22% Similarity=0.308 Sum_probs=119.9
Q ss_pred CCcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 370 ~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
..+.|.+.|.||||||||++++.+.+ ..+.+||.||.....+.+.. ++.++++|||||+-+...-. .+.+|.
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~Ak-pEvA~YPFTTK~i~vGhfe~-~~~R~QvIDTPGlLDRPl~E--rN~IE~---- 238 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAK-PEVAPYPFTTKGIHVGHFER-GYLRIQVIDTPGLLDRPLEE--RNEIER---- 238 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCC-CccCCCCccccceeEeeeec-CCceEEEecCCcccCCChHH--hcHHHH----
Confidence 45899999999999999999999885 56999999999999999986 77899999999998753211 134443
Q ss_pred HHHHHHh-cCCeEEEEecccc--cCCH-HHHHHHHHHHH-hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005504 450 RAFRAIR-RSDVVALVIEAMA--CITE-QDCRIAERIEQ-EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (693)
Q Consensus 450 ~~~~~i~-~aDvvllViDa~~--~~~~-~d~~~~~~l~~-~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~ 524 (693)
++..+++ -.++++|++|.+. |.+- .+..+++.+.. ++.|+++|+||+|+...+... ++...+...+..
T Consensus 239 qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~~~-------~~~~~~~~~~~~ 311 (346)
T COG1084 239 QAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEEKLE-------EIEASVLEEGGE 311 (346)
T ss_pred HHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchhHHH-------HHHHHHHhhccc
Confidence 3333443 3688999999864 4443 34567777775 467999999999997543322 222233333444
Q ss_pred cEEEeccccCCCHHHHHHHHHHH
Q 005504 525 PIVYSTAIAGQSVDKIIVAAEMV 547 (693)
Q Consensus 525 piv~iSA~~g~gv~~L~~~i~~~ 547 (693)
..+.+|+..+.+++.+...+...
T Consensus 312 ~~~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 312 EPLKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred cccceeeeehhhHHHHHHHHHHH
Confidence 46778999999999888777655
No 315
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.67 E-value=9.9e-16 Score=146.74 Aligned_cols=151 Identities=17% Similarity=0.106 Sum_probs=102.4
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (693)
+|+++|.+|||||||+++|++.+. .....+..+.+.....+.+++ ..+.+|||||....
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~------------------ 62 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKF-KEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERF------------------ 62 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHH------------------
Confidence 699999999999999999998763 222333333333333444545 46889999998531
Q ss_pred CCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH-HHHHHHHh-hcCCCcEEEEecccCCccchh
Q 005504 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRK-NYMDKFIILAVNKCESPRKGI 320 (693)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~-~i~~~L~~-~~~~~p~ivv~NK~D~~~~~~ 320 (693)
.......++.+|++++|+|..++.+.... .++..++. ...+.|+++|+||+|+.....
T Consensus 63 --------------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~ 122 (161)
T cd04113 63 --------------------RSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQRE 122 (161)
T ss_pred --------------------HHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhcc
Confidence 12334567889999999999876544332 22222222 124789999999999865321
Q ss_pred h---hHH-HHHhcCCCCccccccCCCCHHHHHHHHHhh
Q 005504 321 M---QVS-EFWSLGFSPLPISAISGTGTGELLDLVCSE 354 (693)
Q Consensus 321 ~---~~~-~~~~~g~~~v~iSA~~g~gi~~Ll~~i~~~ 354 (693)
. ... .....++.++++||++|.|+.++++.+.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 123 VTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred CCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 1 111 223456789999999999999999998764
No 316
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.67 E-value=1.4e-15 Score=158.78 Aligned_cols=113 Identities=25% Similarity=0.319 Sum_probs=86.5
Q ss_pred EEEeecCCCCChhhHHHHHhcCCCce-----ec------C------CCCcccceEEEEEeCCCCCeEEEEeCccccchhh
Q 005504 373 AIAIVGRPNVGKSSILNALVGEDRTI-----VS------P------ISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAA 435 (693)
Q Consensus 373 ~I~ivG~~n~GKSSLin~llg~~~~~-----v~------~------~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~ 435 (693)
+|+++|++|+|||||+|+|++....+ +. + ..+.|.......+.+ ++..+.+|||||+.++.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~~f~- 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW-KGHKINLIDTPGYADFV- 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE-CCEEEEEEECcCHHHHH-
Confidence 58999999999999999998643221 10 0 013444444445553 67899999999986542
Q ss_pred hccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCC
Q 005504 436 IASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIP 500 (693)
Q Consensus 436 ~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~ 500 (693)
..+..+++.+|++++|+|++.+...+...+++.+...++|+++++||+|+..
T Consensus 79 -------------~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~ 130 (268)
T cd04170 79 -------------GETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRER 130 (268)
T ss_pred -------------HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCC
Confidence 2455678899999999999999888888888888889999999999999754
No 317
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.67 E-value=1.3e-15 Score=150.53 Aligned_cols=155 Identities=15% Similarity=0.070 Sum_probs=109.4
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (693)
.+|+++|..|||||||+.++.+... .....+..+.+.....+..++ ..+.+|||+|....
T Consensus 7 ~KivviG~~~vGKTsll~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~----------------- 68 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQDGST-ESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRF----------------- 68 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHH-----------------
Confidence 5899999999999999999997542 111223344455445556666 56889999998641
Q ss_pred cCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH-HHHHHHHhhcCCCcEEEEecccCCccchh
Q 005504 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRKGI 320 (693)
Q Consensus 242 ~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~-~i~~~L~~~~~~~p~ivv~NK~D~~~~~~ 320 (693)
......+++.+|++|+|+|.++..+.... .+.+.+.+...+.|+|+|+||+|+.....
T Consensus 69 ---------------------~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~ 127 (189)
T cd04121 69 ---------------------CTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQ 127 (189)
T ss_pred ---------------------HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccC
Confidence 12334667899999999999986555443 34444444445789999999999865321
Q ss_pred h---hHHHH-HhcCCCCccccccCCCCHHHHHHHHHhhccc
Q 005504 321 M---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (693)
Q Consensus 321 ~---~~~~~-~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l~~ 357 (693)
. ....+ ...+..++++||++|.|++++++.|.+.+..
T Consensus 128 v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~~i~~ 168 (189)
T cd04121 128 VATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIVLM 168 (189)
T ss_pred CCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 1 22222 2356789999999999999999999876643
No 318
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.67 E-value=8.1e-16 Score=147.66 Aligned_cols=147 Identities=22% Similarity=0.284 Sum_probs=96.9
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCC
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (693)
+|+++|.+|||||||++++...... ...|.+. .....+......+.+|||||...
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~--~~~pt~g--~~~~~~~~~~~~~~l~D~~G~~~--------------------- 56 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV--TTIPTIG--FNVETVEYKNISFTVWDVGGQDK--------------------- 56 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc--ccCCCCC--cceEEEEECCEEEEEEECCCCHh---------------------
Confidence 6999999999999999999755422 2233222 22334556778899999999853
Q ss_pred CCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHH--HHHHHHHHHh-hcCCCcEEEEecccCCccchh-
Q 005504 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA--DEEIADWLRK-NYMDKFIILAVNKCESPRKGI- 320 (693)
Q Consensus 245 g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~--d~~i~~~L~~-~~~~~p~ivv~NK~D~~~~~~- 320 (693)
+...+..+++.||+++||+|+++..+.. ...+.+.+.. .....|+++|+||+|+.....
T Consensus 57 -----------------~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~ 119 (159)
T cd04150 57 -----------------IRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSA 119 (159)
T ss_pred -----------------HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCH
Confidence 1133446789999999999998643222 2223333322 123589999999999864311
Q ss_pred hhHHHHHhc------CCCCccccccCCCCHHHHHHHHHh
Q 005504 321 MQVSEFWSL------GFSPLPISAISGTGTGELLDLVCS 353 (693)
Q Consensus 321 ~~~~~~~~~------g~~~v~iSA~~g~gi~~Ll~~i~~ 353 (693)
......... ++.++++||++|.|+++++++|.+
T Consensus 120 ~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 120 AEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred HHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 111111111 223568999999999999998864
No 319
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.67 E-value=1.2e-15 Score=145.93 Aligned_cols=152 Identities=18% Similarity=0.158 Sum_probs=104.7
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (693)
+|+++|.+|||||||++++++.. .+..+.+++.+.......+++ ..+.+|||||.....
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----------------- 62 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE--FVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYA----------------- 62 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhh-----------------
Confidence 69999999999999999999764 334555555555554455554 468999999975421
Q ss_pred CCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHH--HHHHHHHHHh-hcCCCcEEEEecccCCccch
Q 005504 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA--DEEIADWLRK-NYMDKFIILAVNKCESPRKG 319 (693)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~--d~~i~~~L~~-~~~~~p~ivv~NK~D~~~~~ 319 (693)
.....+++.+|.+++|+|..++-+.. ...+..+++. ...+.|+++|+||+|+....
T Consensus 63 ---------------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~ 121 (164)
T cd04139 63 ---------------------AIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKR 121 (164)
T ss_pred ---------------------HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccccc
Confidence 22335678899999999987643221 2223333332 12478999999999987521
Q ss_pred h---hhHHH-HHhcCCCCccccccCCCCHHHHHHHHHhhcc
Q 005504 320 I---MQVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (693)
Q Consensus 320 ~---~~~~~-~~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l~ 356 (693)
. ..... ...++++++++||.+|.|+++|++.|.+.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 122 QVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred ccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 1 11111 2235678999999999999999999987553
No 320
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.67 E-value=1.2e-15 Score=175.05 Aligned_cols=162 Identities=19% Similarity=0.197 Sum_probs=117.3
Q ss_pred CCcEEEeecCCCCChhhHHHHHhcCCCce--------ec------CCCCcccceEEEEEeCC--C--CCeEEEEeCcccc
Q 005504 370 RIPAIAIVGRPNVGKSSILNALVGEDRTI--------VS------PISGTTRDAIDTEFTGP--E--GQKFRLIDTAGIR 431 (693)
Q Consensus 370 ~~~~I~ivG~~n~GKSSLin~llg~~~~~--------v~------~~~gtT~d~~~~~~~~~--~--g~~i~liDTpG~~ 431 (693)
+.++|+++|+.++|||||+++|+.....+ +. ...|.|.......+.+. + +..+.||||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 45799999999999999999998632211 11 12377777654444321 2 4578999999998
Q ss_pred chhhhccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHH
Q 005504 432 KRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYE 511 (693)
Q Consensus 432 ~~~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~ 511 (693)
++.. ...++++.||++|+|+|++++...++...+..+...++|+|+|+||+|+..... ....
T Consensus 86 dF~~--------------~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~----~~v~ 147 (600)
T PRK05433 86 DFSY--------------EVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADP----ERVK 147 (600)
T ss_pred HHHH--------------HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccH----HHHH
Confidence 7632 234567899999999999999988888777777778999999999999864321 1223
Q ss_pred HHHHHHHhcCCCCcEEEeccccCCCHHHHHHHHHHHHHH
Q 005504 512 QDVREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVDKE 550 (693)
Q Consensus 512 ~~i~~~l~~~~~~piv~iSA~~g~gv~~L~~~i~~~~~~ 550 (693)
+++.+.+. +....++++||++|.|+++|++++.+....
T Consensus 148 ~ei~~~lg-~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 148 QEIEDVIG-IDASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred HHHHHHhC-CCcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 33433332 122358999999999999999999876543
No 321
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.67 E-value=1.3e-15 Score=146.19 Aligned_cols=153 Identities=18% Similarity=0.158 Sum_probs=99.7
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCC-ceeeeEEEEEEec---CeeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPG-VTRDRMYGRSFWG---EHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~-~T~~~~~~~~~~~---~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~ 240 (693)
+|+++|.+|||||||+++|.+........+.. +..+.....+.+. ...+.+|||||....
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---------------- 65 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELY---------------- 65 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHH----------------
Confidence 69999999999999999998642222233332 2233333333332 367999999997431
Q ss_pred ccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHH-HHHHHHHHhhcCCCcEEEEecccCCccch
Q 005504 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNYMDKFIILAVNKCESPRKG 319 (693)
Q Consensus 241 ~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d-~~i~~~L~~~~~~~p~ivv~NK~D~~~~~ 319 (693)
......+++.+|++++|+|.++..+... ..+.+.+.....+.|+++|+||+|+....
T Consensus 66 ----------------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 123 (164)
T cd04101 66 ----------------------SDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKA 123 (164)
T ss_pred ----------------------HHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccccc
Confidence 1223456789999999999986533322 12333333322468999999999986542
Q ss_pred hhhH---HH-HHhcCCCCccccccCCCCHHHHHHHHHhhc
Q 005504 320 IMQV---SE-FWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (693)
Q Consensus 320 ~~~~---~~-~~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l 355 (693)
.... .. ....+..++++||.+|.|++++++.|.+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 124 EVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred CCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence 2111 11 223455789999999999999999987653
No 322
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.67 E-value=7.9e-16 Score=151.47 Aligned_cols=150 Identities=19% Similarity=0.205 Sum_probs=102.2
Q ss_pred CCeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005504 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (693)
Q Consensus 163 ~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (693)
..+|+++|.+|||||||+|++.+.....+. .|.......+.+++..+.++||||....
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~G~~~~------------------ 74 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQHQ----PTQHPTSEELAIGNIKFTTFDLGGHQQA------------------ 74 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCcccC----CccccceEEEEECCEEEEEEECCCCHHH------------------
Confidence 368999999999999999999987533322 2334444556778889999999998531
Q ss_pred CCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCH--HHHHHHHHHHh-hcCCCcEEEEecccCCccch
Q 005504 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTA--ADEEIADWLRK-NYMDKFIILAVNKCESPRKG 319 (693)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~--~d~~i~~~L~~-~~~~~p~ivv~NK~D~~~~~ 319 (693)
......++..+|+++||+|+++.... ....+.+.+.. ...+.|+++|+||+|+....
T Consensus 75 --------------------~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~ 134 (184)
T smart00178 75 --------------------RRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAA 134 (184)
T ss_pred --------------------HHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCC
Confidence 12334677899999999999864222 12233333322 12478999999999986421
Q ss_pred -hhhHHHHHhc-------------CCCCccccccCCCCHHHHHHHHHhh
Q 005504 320 -IMQVSEFWSL-------------GFSPLPISAISGTGTGELLDLVCSE 354 (693)
Q Consensus 320 -~~~~~~~~~~-------------g~~~v~iSA~~g~gi~~Ll~~i~~~ 354 (693)
.........+ ...++++||.+|.|+++++++|.+.
T Consensus 135 ~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 135 SEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred CHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence 1111111111 1147999999999999999999754
No 323
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.67 E-value=1.8e-15 Score=172.92 Aligned_cols=163 Identities=18% Similarity=0.264 Sum_probs=109.3
Q ss_pred cCCcEEEeecCCCCChhhHHHHHhcCCCceecCCCC-cccceEE--EEEeCC---CC------------CeEEEEeCccc
Q 005504 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISG-TTRDAID--TEFTGP---EG------------QKFRLIDTAGI 430 (693)
Q Consensus 369 ~~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~g-tT~d~~~--~~~~~~---~g------------~~i~liDTpG~ 430 (693)
.+++.|+++|++|+|||||+|+|.+.. .+...+| .|.+.-. ..+... .+ ..+.||||||+
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~--v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~ 81 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTA--VAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH 81 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcc--cccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh
Confidence 356789999999999999999998763 2333332 2322100 000000 00 13799999999
Q ss_pred cchhhhccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcch------
Q 005504 431 RKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQ------ 504 (693)
Q Consensus 431 ~~~~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~------ 504 (693)
.++... ..+.++.+|++++|+|+++++..+....+..+...++|+++|+||+|+......
T Consensus 82 e~f~~~--------------~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~ 147 (586)
T PRK04004 82 EAFTNL--------------RKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPF 147 (586)
T ss_pred HHHHHH--------------HHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchH
Confidence 775332 123567899999999999999899998888888889999999999998632110
Q ss_pred ---------hhHHHH---HHHHHHHHhc--------------CCCCcEEEeccccCCCHHHHHHHHHHH
Q 005504 505 ---------QTATYY---EQDVREKLRA--------------LDWAPIVYSTAIAGQSVDKIIVAAEMV 547 (693)
Q Consensus 505 ---------~~~~~~---~~~i~~~l~~--------------~~~~piv~iSA~~g~gv~~L~~~i~~~ 547 (693)
.....+ ..++...|.. .+..+++++||++|.|+++|++.+...
T Consensus 148 ~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~ 216 (586)
T PRK04004 148 LESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGL 216 (586)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHH
Confidence 001111 1112222221 134789999999999999999887643
No 324
>PLN03118 Rab family protein; Provisional
Probab=99.66 E-value=9.6e-16 Score=154.23 Aligned_cols=155 Identities=15% Similarity=0.120 Sum_probs=105.2
Q ss_pred CCeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005504 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (693)
Q Consensus 163 ~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~ 240 (693)
..+|+|+|.+|||||||+++|++...... .+.++.+.....+.+++ ..+.+|||||...+
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~---------------- 75 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSVEDL--APTIGVDFKIKQLTVGGKRLKLTIWDTAGQERF---------------- 75 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCc--CCCceeEEEEEEEEECCEEEEEEEEECCCchhh----------------
Confidence 35899999999999999999998764322 23333333334445554 46899999998542
Q ss_pred ccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHH--HHHHHHhh--cCCCcEEEEecccCCc
Q 005504 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE--IADWLRKN--YMDKFIILAVNKCESP 316 (693)
Q Consensus 241 ~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~--i~~~L~~~--~~~~p~ivv~NK~D~~ 316 (693)
......+++.+|++++|+|..+..+..+.. +...+... ..+.|+++|+||+|+.
T Consensus 76 ----------------------~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~ 133 (211)
T PLN03118 76 ----------------------RTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRE 133 (211)
T ss_pred ----------------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 123346678999999999998754443332 22223221 1357899999999986
Q ss_pred cchhhh---HHH-HHhcCCCCccccccCCCCHHHHHHHHHhhccc
Q 005504 317 RKGIMQ---VSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (693)
Q Consensus 317 ~~~~~~---~~~-~~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l~~ 357 (693)
...... ... ....+..++++||++|.|++++++.|.+.+.+
T Consensus 134 ~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 134 SERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIME 178 (211)
T ss_pred ccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 432211 111 22355678999999999999999999987753
No 325
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.66 E-value=1.4e-15 Score=151.78 Aligned_cols=154 Identities=18% Similarity=0.177 Sum_probs=103.8
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEec-C--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG-E--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~-~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (693)
+|+++|.+|||||||++++++... .....+.+..+.....+.++ + ..+.+|||||...+.
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~-~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~---------------- 64 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIF-SQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFG---------------- 64 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhh----------------
Confidence 699999999999999999998652 22223444444444445555 3 568899999985421
Q ss_pred cCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH-HHHHHHHhh-----cCCCcEEEEecccCC
Q 005504 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-----YMDKFIILAVNKCES 315 (693)
Q Consensus 242 ~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~-~i~~~L~~~-----~~~~p~ivv~NK~D~ 315 (693)
.....+++.+|++++|+|.++..+.+.. .+...+... ..+.|+++|+||+|+
T Consensus 65 ----------------------~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl 122 (201)
T cd04107 65 ----------------------GMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDL 122 (201)
T ss_pred ----------------------hhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCc
Confidence 2234667899999999999875444332 122222211 146799999999998
Q ss_pred ccchh---hhHHHH-HhcC-CCCccccccCCCCHHHHHHHHHhhccc
Q 005504 316 PRKGI---MQVSEF-WSLG-FSPLPISAISGTGTGELLDLVCSELKK 357 (693)
Q Consensus 316 ~~~~~---~~~~~~-~~~g-~~~v~iSA~~g~gi~~Ll~~i~~~l~~ 357 (693)
..... ....++ ...+ ..++++||++|.|++++++.|.+.+..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~ 169 (201)
T cd04107 123 KKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLVKNILA 169 (201)
T ss_pred ccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 63211 112222 2345 378999999999999999999987653
No 326
>PRK00007 elongation factor G; Reviewed
Probab=99.66 E-value=6.6e-16 Score=181.06 Aligned_cols=146 Identities=18% Similarity=0.150 Sum_probs=118.5
Q ss_pred CCcEEEeecCCCCChhhHHHHHhc---CCCc--eec------------CCCCcccceEEEEEeCCCCCeEEEEeCccccc
Q 005504 370 RIPAIAIVGRPNVGKSSILNALVG---EDRT--IVS------------PISGTTRDAIDTEFTGPEGQKFRLIDTAGIRK 432 (693)
Q Consensus 370 ~~~~I~ivG~~n~GKSSLin~llg---~~~~--~v~------------~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~ 432 (693)
+.++|+|+|++|+|||||+|+|+. .... .+. ...|+|++.....+.+ .+..+.|+||||+.+
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~-~~~~~~liDTPG~~~ 87 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KDHRINIIDTPGHVD 87 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE-CCeEEEEEeCCCcHH
Confidence 457999999999999999999973 2111 122 2568999998888875 788999999999865
Q ss_pred hhhhccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHHH
Q 005504 433 RAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQ 512 (693)
Q Consensus 433 ~~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~ 512 (693)
+ ...+.++++.+|++|+|+|+..+...++..++.++.+.++|+|+++||||+.... .....+
T Consensus 88 f--------------~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~----~~~~~~ 149 (693)
T PRK00007 88 F--------------TIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGAD----FYRVVE 149 (693)
T ss_pred H--------------HHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCC----HHHHHH
Confidence 4 1246778899999999999999999999999999999999999999999997533 334566
Q ss_pred HHHHHHhcCCCCcEEEeccccC
Q 005504 513 DVREKLRALDWAPIVYSTAIAG 534 (693)
Q Consensus 513 ~i~~~l~~~~~~piv~iSA~~g 534 (693)
++++.+......+++++||..+
T Consensus 150 ~i~~~l~~~~~~~~ipisa~~~ 171 (693)
T PRK00007 150 QIKDRLGANPVPIQLPIGAEDD 171 (693)
T ss_pred HHHHHhCCCeeeEEecCccCCc
Confidence 7777877766667888998877
No 327
>CHL00071 tufA elongation factor Tu
Probab=99.66 E-value=1.2e-15 Score=168.41 Aligned_cols=153 Identities=16% Similarity=0.130 Sum_probs=115.0
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCcee---------------eecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCc
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRA---------------IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQ 228 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~---------------~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~ 228 (693)
.+|+++||+|+|||||+|+|++.... ......|+|.+.....+.+++..+.++||||+..
T Consensus 13 ~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~----- 87 (409)
T CHL00071 13 VNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD----- 87 (409)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH-----
Confidence 57999999999999999999975211 1122368898887777777888999999999743
Q ss_pred hhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCc-EE
Q 005504 229 PNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF-II 307 (693)
Q Consensus 229 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p-~i 307 (693)
+...+..++..+|++++|+|+..|+..++.+++.++.. .+.| +|
T Consensus 88 ---------------------------------~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~--~g~~~iI 132 (409)
T CHL00071 88 ---------------------------------YVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQ--VGVPNIV 132 (409)
T ss_pred ---------------------------------HHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEEE
Confidence 12445678889999999999999999999999998877 4778 77
Q ss_pred EEecccCCccchh-h-----hHHHH-HhcC-----CCCccccccCCCC------------------HHHHHHHHHhhcc
Q 005504 308 LAVNKCESPRKGI-M-----QVSEF-WSLG-----FSPLPISAISGTG------------------TGELLDLVCSELK 356 (693)
Q Consensus 308 vv~NK~D~~~~~~-~-----~~~~~-~~~g-----~~~v~iSA~~g~g------------------i~~Ll~~i~~~l~ 356 (693)
+|+||+|+..... . ....+ ...+ .+++++||.+|.+ +..|++.|...++
T Consensus 133 vvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~ 211 (409)
T CHL00071 133 VFLNKEDQVDDEELLELVELEVRELLSKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIP 211 (409)
T ss_pred EEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCC
Confidence 8999999975321 1 11112 2233 3579999999863 4677777776654
No 328
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.66 E-value=1.2e-15 Score=178.95 Aligned_cols=116 Identities=22% Similarity=0.229 Sum_probs=96.6
Q ss_pred CCcEEEeecCCCCChhhHHHHHhcCCCce-----ecC------------CCCcccceEEEEEeCCCCCeEEEEeCccccc
Q 005504 370 RIPAIAIVGRPNVGKSSILNALVGEDRTI-----VSP------------ISGTTRDAIDTEFTGPEGQKFRLIDTAGIRK 432 (693)
Q Consensus 370 ~~~~I~ivG~~n~GKSSLin~llg~~~~~-----v~~------------~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~ 432 (693)
+.++|+|+|++|+|||||+|+|+.....+ +.+ ..|+|++.....+.+ ++..+.+|||||+.+
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~-~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW-KGHRINIIDTPGHVD 87 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE-CCeEEEEEECCCCcc
Confidence 45799999999999999999998543321 221 358899888888875 788999999999976
Q ss_pred hhhhccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCC
Q 005504 433 RAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIP 500 (693)
Q Consensus 433 ~~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~ 500 (693)
+. ..+..+++.+|++++|+|+.++...++..++..+...++|+++|+||+|+..
T Consensus 88 ~~--------------~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 88 FT--------------VEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTG 141 (689)
T ss_pred hh--------------HHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 42 1355678899999999999999999999999999999999999999999875
No 329
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.66 E-value=7.9e-16 Score=156.97 Aligned_cols=156 Identities=24% Similarity=0.264 Sum_probs=117.1
Q ss_pred CCcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 370 ~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
..-+|++||.|+||||||+|.|++.+ ..+..++.||..++.+.+.+ +|-.++++|+||+....+ ....+..
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~-seva~y~FTTl~~VPG~l~Y-~ga~IQild~Pgii~gas-------~g~grG~ 132 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTK-SEVADYPFTTLEPVPGMLEY-KGAQIQLLDLPGIIEGAS-------SGRGRGR 132 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCC-ccccccCceecccccceEee-cCceEEEEcCcccccCcc-------cCCCCcc
Confidence 44699999999999999999999875 67999999999999999997 899999999999977432 2233345
Q ss_pred HHHHHHhcCCeEEEEecccccCC------------------------------------------HHHHHHHHHHH-H--
Q 005504 450 RAFRAIRRSDVVALVIEAMACIT------------------------------------------EQDCRIAERIE-Q-- 484 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~------------------------------------------~~d~~~~~~l~-~-- 484 (693)
+++..++.||++++|+|+..... .-|...++.+. +
T Consensus 133 ~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~ 212 (365)
T COG1163 133 QVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYR 212 (365)
T ss_pred eeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhC
Confidence 66778899999999999975321 11111111111 1
Q ss_pred -------------------------hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcEEEeccccCCCHHH
Q 005504 485 -------------------------EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDK 539 (693)
Q Consensus 485 -------------------------~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~piv~iSA~~g~gv~~ 539 (693)
..+|+++|+||+|++..+. ...+.+. .+++++||++|+|+++
T Consensus 213 I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~-------~~~l~~~------~~~v~isa~~~~nld~ 279 (365)
T COG1163 213 IHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEE-------LERLARK------PNSVPISAKKGINLDE 279 (365)
T ss_pred cccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHH-------HHHHHhc------cceEEEecccCCCHHH
Confidence 1689999999999976321 1222222 3799999999999999
Q ss_pred HHHHHHHH
Q 005504 540 IIVAAEMV 547 (693)
Q Consensus 540 L~~~i~~~ 547 (693)
|.+.+-+.
T Consensus 280 L~e~i~~~ 287 (365)
T COG1163 280 LKERIWDV 287 (365)
T ss_pred HHHHHHHh
Confidence 99887543
No 330
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.66 E-value=1.3e-15 Score=148.73 Aligned_cols=151 Identities=24% Similarity=0.290 Sum_probs=100.1
Q ss_pred CCeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005504 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (693)
Q Consensus 163 ~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (693)
..+|+++|.+|||||||++++..... ....|++.. ......+.+..+.+|||||....
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~--~~~~~t~~~--~~~~~~~~~~~l~l~D~~G~~~~------------------ 70 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGES--VTTIPTIGF--NVETVTYKNISFTVWDVGGQDKI------------------ 70 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC--CCcCCcccc--ceEEEEECCEEEEEEECCCChhh------------------
Confidence 36899999999999999999965432 223333322 23345567788999999998541
Q ss_pred CCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCH--HHHHHHHHHHh-hcCCCcEEEEecccCCccch
Q 005504 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTA--ADEEIADWLRK-NYMDKFIILAVNKCESPRKG 319 (693)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~--~d~~i~~~L~~-~~~~~p~ivv~NK~D~~~~~ 319 (693)
......+++.||++|||+|+++..+. ....+.+.+.. ...+.|+++|+||+|+....
T Consensus 71 --------------------~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~ 130 (175)
T smart00177 71 --------------------RPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM 130 (175)
T ss_pred --------------------HHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC
Confidence 13344668899999999999865322 22233333332 12467999999999986431
Q ss_pred h-hhHHHHHhc------CCCCccccccCCCCHHHHHHHHHhhc
Q 005504 320 I-MQVSEFWSL------GFSPLPISAISGTGTGELLDLVCSEL 355 (693)
Q Consensus 320 ~-~~~~~~~~~------g~~~v~iSA~~g~gi~~Ll~~i~~~l 355 (693)
. ....+.... .+.++++||++|.|+.+++++|.+.+
T Consensus 131 ~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 131 KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 1 111111111 12356899999999999999997764
No 331
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.66 E-value=1.2e-15 Score=174.78 Aligned_cols=157 Identities=24% Similarity=0.306 Sum_probs=114.6
Q ss_pred CCeEEEEcCCCCChhhHHHHhhcCceee--------ec------CCCCceeeeEEEEEEec---C--eeEEEEecCCccc
Q 005504 163 LPRVAIVGRPNVGKSALFNRLVGGNRAI--------VV------DEPGVTRDRMYGRSFWG---E--HEFMLVDTGGVLN 223 (693)
Q Consensus 163 ~~~V~ivG~~nvGKSsL~n~l~~~~~~~--------v~------~~~~~T~~~~~~~~~~~---~--~~~~lvDTpG~~~ 223 (693)
..+|+|+||+|+|||||+++|+....++ +. ...|+|.+.....+.|. + ..+.+|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4579999999999999999998642111 11 22377777666556663 3 5789999999975
Q ss_pred ccCCchhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCC
Q 005504 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (693)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~ 303 (693)
+ ...+.++++.||++|+|+|++++.+.++...+..+.. .+
T Consensus 83 F--------------------------------------~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~--~~ 122 (595)
T TIGR01393 83 F--------------------------------------SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE--ND 122 (595)
T ss_pred H--------------------------------------HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH--cC
Confidence 2 1334577899999999999999998887765555444 47
Q ss_pred CcEEEEecccCCccchhhhH-HHHH-hcCC---CCccccccCCCCHHHHHHHHHhhccccc
Q 005504 304 KFIILAVNKCESPRKGIMQV-SEFW-SLGF---SPLPISAISGTGTGELLDLVCSELKKVE 359 (693)
Q Consensus 304 ~p~ivv~NK~D~~~~~~~~~-~~~~-~~g~---~~v~iSA~~g~gi~~Ll~~i~~~l~~~~ 359 (693)
.|+++|+||+|+........ .++. .+++ .++++||++|.|+++|++.|.+.++...
T Consensus 123 ipiIiViNKiDl~~~~~~~~~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p~ 183 (595)
T TIGR01393 123 LEIIPVINKIDLPSADPERVKKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRVPPPK 183 (595)
T ss_pred CCEEEEEECcCCCccCHHHHHHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCCCC
Confidence 89999999999864322111 1221 1343 3799999999999999999999887653
No 332
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.66 E-value=2.9e-16 Score=147.87 Aligned_cols=154 Identities=27% Similarity=0.337 Sum_probs=100.2
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (693)
.+|+++|++|+|||||+|+|.+.. ......+++|.+.....+.+++ ..+.+|||||.......
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~-------------- 66 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAI-------------- 66 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHH--------------
Confidence 479999999999999999999987 6777788899888887777888 77899999996542110
Q ss_pred cCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCccchhh
Q 005504 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM 321 (693)
Q Consensus 242 ~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~~~ 321 (693)
.....+++...+..+|++++|+|...+.......+.+.+. .+.|+++|+||+|+......
T Consensus 67 -----------------~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~ 126 (161)
T TIGR00231 67 -----------------RRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAE---SNVPIILVGNKIDLRDAKLK 126 (161)
T ss_pred -----------------HHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcc---cCCcEEEEEEcccCCcchhh
Confidence 0001112222223344444444443332222222333322 27899999999999764211
Q ss_pred h--HHHHHhcC-CCCccccccCCCCHHHHHHHHH
Q 005504 322 Q--VSEFWSLG-FSPLPISAISGTGTGELLDLVC 352 (693)
Q Consensus 322 ~--~~~~~~~g-~~~v~iSA~~g~gi~~Ll~~i~ 352 (693)
. ...+...+ ..++++||.+|.|+.++++.|.
T Consensus 127 ~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 127 THVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred HHHHHHHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence 1 11222233 3689999999999999998763
No 333
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.66 E-value=5e-16 Score=157.61 Aligned_cols=190 Identities=21% Similarity=0.218 Sum_probs=138.1
Q ss_pred HhhHhhhcccchhhhhhhhhhhhccccccCCCCCCCCeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEE
Q 005504 128 LSRQLIIQDETDDRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSF 207 (693)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~ 207 (693)
..+++.+.++...++.++..++++ ..+..+.....|.|++||++|+|||||+++|++.. ....+.-+.|.|+......
T Consensus 144 d~~rllr~kea~lrKeL~~vrrkr-~~r~gr~~~s~pviavVGYTNaGKsTLikaLT~Aa-l~p~drLFATLDpT~h~a~ 221 (410)
T KOG0410|consen 144 DIRRLLRIKEAQLRKELQRVRRKR-QRRVGREGESSPVIAVVGYTNAGKSTLIKALTKAA-LYPNDRLFATLDPTLHSAH 221 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hhhhccccCCCceEEEEeecCccHHHHHHHHHhhh-cCccchhheeccchhhhcc
Confidence 334677777777888888777777 33344455567999999999999999999999654 3455666888888776665
Q ss_pred e-cCeeEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCC
Q 005504 208 W-GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL 286 (693)
Q Consensus 208 ~-~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~ 286 (693)
+ .|..+++.||-||.+ ..+.++ +.+| +.++..+..+|++|+|+|++++.
T Consensus 222 Lpsg~~vlltDTvGFis--dLP~~L-------------------vaAF---------~ATLeeVaeadlllHvvDiShP~ 271 (410)
T KOG0410|consen 222 LPSGNFVLLTDTVGFIS--DLPIQL-------------------VAAF---------QATLEEVAEADLLLHVVDISHPN 271 (410)
T ss_pred CCCCcEEEEeechhhhh--hCcHHH-------------------HHHH---------HHHHHHHhhcceEEEEeecCCcc
Confidence 5 578899999999975 333333 3222 45667889999999999999987
Q ss_pred CHHHH-HHHHHHHhhcCCCc-------EEEEecccCCccchhhhHHHHHhcCCCCccccccCCCCHHHHHHHHHhhccc
Q 005504 287 TAADE-EIADWLRKNYMDKF-------IILAVNKCESPRKGIMQVSEFWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (693)
Q Consensus 287 ~~~d~-~i~~~L~~~~~~~p-------~ivv~NK~D~~~~~~~~~~~~~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l~~ 357 (693)
..+.. .++..|+. .+.| +|-|-||+|......... .. ..+++||.+|.|+++|++.+...+..
T Consensus 272 ae~q~e~Vl~vL~~--igv~~~pkl~~mieVdnkiD~e~~~~e~E----~n--~~v~isaltgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 272 AEEQRETVLHVLNQ--IGVPSEPKLQNMIEVDNKIDYEEDEVEEE----KN--LDVGISALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred HHHHHHHHHHHHHh--cCCCcHHHHhHHHhhccccccccccCccc----cC--CccccccccCccHHHHHHHHHHHhhh
Confidence 66654 56666766 3443 677888888755332111 11 26899999999999999998876654
No 334
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.66 E-value=1.6e-15 Score=150.21 Aligned_cols=153 Identities=18% Similarity=0.160 Sum_probs=102.1
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceee-eEEEEEEecCe--eEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRD-RMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~-~~~~~~~~~~~--~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (693)
+|+++|.+|||||||++++++.+ .....+.++... .....+.+++. .+.+|||||.....
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~---------------- 64 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHR-FLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYE---------------- 64 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC-cCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhh----------------
Confidence 69999999999999999999875 332233333322 22334556664 46699999975421
Q ss_pred cCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHH-HHHHHHHHhhcCCCcEEEEecccCCccch-
Q 005504 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNYMDKFIILAVNKCESPRKG- 319 (693)
Q Consensus 242 ~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d-~~i~~~L~~~~~~~p~ivv~NK~D~~~~~- 319 (693)
......+..+|++++|+|..+.-+... ..+++.++....+.|+++|+||+|+....
T Consensus 65 ----------------------~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~ 122 (193)
T cd04118 65 ----------------------AMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDR 122 (193)
T ss_pred ----------------------hhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEccccccccc
Confidence 112245678999999999986533322 23444444433468999999999985421
Q ss_pred ---h---hhHHHH-HhcCCCCccccccCCCCHHHHHHHHHhhcc
Q 005504 320 ---I---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (693)
Q Consensus 320 ---~---~~~~~~-~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l~ 356 (693)
. .....+ ...+..++++||.+|.|+++|++.|.+.+-
T Consensus 123 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~ 166 (193)
T cd04118 123 SLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDFV 166 (193)
T ss_pred ccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 1 111122 234567899999999999999999987664
No 335
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.66 E-value=1.3e-15 Score=148.80 Aligned_cols=151 Identities=13% Similarity=0.096 Sum_probs=102.7
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (693)
.+|+++|.+|||||||++++.+... +..+.++..+.....+.+++ ..+.+|||+|......
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------------- 64 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDR--------------- 64 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhh---------------
Confidence 3699999999999999999997652 23333333333333455666 5678999999865321
Q ss_pred cCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH--HHHHHHHhhcCCCcEEEEecccCCccch
Q 005504 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKG 319 (693)
Q Consensus 242 ~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~--~i~~~L~~~~~~~p~ivv~NK~D~~~~~ 319 (693)
....+++.+|++++|+|..+..+.... .+...+++...+.|+++|+||+|+....
T Consensus 65 -----------------------~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~ 121 (175)
T cd01874 65 -----------------------LRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 121 (175)
T ss_pred -----------------------hhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhCh
Confidence 112456789999999999876555443 2444454433478999999999985431
Q ss_pred h------------h---hHHHH-HhcC-CCCccccccCCCCHHHHHHHHHhh
Q 005504 320 I------------M---QVSEF-WSLG-FSPLPISAISGTGTGELLDLVCSE 354 (693)
Q Consensus 320 ~------------~---~~~~~-~~~g-~~~v~iSA~~g~gi~~Ll~~i~~~ 354 (693)
. . ....+ ...+ ..++++||++|.|+.++++.+...
T Consensus 122 ~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 122 STIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred hhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHHH
Confidence 1 0 01111 1344 468999999999999999988753
No 336
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.66 E-value=1.4e-15 Score=145.59 Aligned_cols=151 Identities=15% Similarity=0.121 Sum_probs=100.3
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (693)
+|+++|.+|+|||||+|+|++..... ...+..+.+.....+.+++ ..+.+|||||.....
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~----------------- 63 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDP-DLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFR----------------- 63 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCc-ccCCcccceEEEEEEEECCEEEEEEEEECCCchhhh-----------------
Confidence 68999999999999999999875322 2233333333333334444 568999999975321
Q ss_pred CCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH-HHHHHHHhh--cCCCcEEEEecccCCccch
Q 005504 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESPRKG 319 (693)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~-~i~~~L~~~--~~~~p~ivv~NK~D~~~~~ 319 (693)
......++.+|++++|+|..+..+.+.. .+.+.+.+. ..+.|+++|+||+|+....
T Consensus 64 ---------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~ 122 (161)
T cd01863 64 ---------------------TLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENRE 122 (161)
T ss_pred ---------------------hhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccc
Confidence 2223556789999999998865444332 223333332 1468899999999987322
Q ss_pred h--hhHHHH-HhcCCCCccccccCCCCHHHHHHHHHhh
Q 005504 320 I--MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSE 354 (693)
Q Consensus 320 ~--~~~~~~-~~~g~~~v~iSA~~g~gi~~Ll~~i~~~ 354 (693)
. .....+ ...+++++++||.+|.|++++++.+.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 123 VTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred cCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 1 111122 2346789999999999999999998764
No 337
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.66 E-value=1.3e-15 Score=175.03 Aligned_cols=153 Identities=18% Similarity=0.197 Sum_probs=116.6
Q ss_pred eEEEEcCCCCChhhHHHHhhcCce--eeecCCCCceeeeEEEEEEe-cCeeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNR--AIVVDEPGVTRDRMYGRSFW-GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~--~~v~~~~~~T~~~~~~~~~~-~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (693)
.|+++||+|+|||||+++|+|.+. .......|+|.+..+..+.. ++..+.+|||||+..
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~------------------ 63 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEK------------------ 63 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHH------------------
Confidence 589999999999999999998532 22334468898887766544 567899999999854
Q ss_pred cCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCc-EEEEecccCCccchh
Q 005504 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF-IILAVNKCESPRKGI 320 (693)
Q Consensus 242 ~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p-~ivv~NK~D~~~~~~ 320 (693)
+.+.+..++..+|++++|+|+.+|..+++.+.+.+++. .+.| +++|+||+|+.++..
T Consensus 64 --------------------fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~--lgi~~iIVVlNKiDlv~~~~ 121 (614)
T PRK10512 64 --------------------FLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQL--TGNPMLTVALTKADRVDEAR 121 (614)
T ss_pred --------------------HHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEECCccCCHHH
Confidence 12345577889999999999999999999999988876 3566 579999999975321
Q ss_pred h-----hHHHHH-hcC---CCCccccccCCCCHHHHHHHHHhhccc
Q 005504 321 M-----QVSEFW-SLG---FSPLPISAISGTGTGELLDLVCSELKK 357 (693)
Q Consensus 321 ~-----~~~~~~-~~g---~~~v~iSA~~g~gi~~Ll~~i~~~l~~ 357 (693)
. ...++. ..+ .+++++||.+|.|+++|++.|.+....
T Consensus 122 ~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 122 IAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLPER 167 (614)
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhcc
Confidence 1 111222 233 368999999999999999999876554
No 338
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.66 E-value=3.2e-15 Score=170.99 Aligned_cols=154 Identities=21% Similarity=0.295 Sum_probs=107.4
Q ss_pred CCCCeEEEEcCCCCChhhHHHHhhcCceeeecCCC-CceeeeEEEEEEec------------------CeeEEEEecCCc
Q 005504 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEP-GVTRDRMYGRSFWG------------------EHEFMLVDTGGV 221 (693)
Q Consensus 161 ~~~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~-~~T~~~~~~~~~~~------------------~~~~~lvDTpG~ 221 (693)
.+.|.|+++||+|+|||||+|+|++.. .....+ +.|.+.......+. -..+.+|||||+
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~--v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~ 81 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTA--VAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH 81 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcc--cccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh
Confidence 356899999999999999999999874 233333 34444322211111 113789999999
Q ss_pred ccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhc
Q 005504 222 LNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY 301 (693)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~ 301 (693)
..+. ....+.+..+|++++|+|+++|+.+++.+.+.+++.
T Consensus 82 e~f~--------------------------------------~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~-- 121 (586)
T PRK04004 82 EAFT--------------------------------------NLRKRGGALADIAILVVDINEGFQPQTIEAINILKR-- 121 (586)
T ss_pred HHHH--------------------------------------HHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHH--
Confidence 6521 223356788999999999999999999888888876
Q ss_pred CCCcEEEEecccCCccchh------------------hh--------H-HHHHhcC---------------CCCcccccc
Q 005504 302 MDKFIILAVNKCESPRKGI------------------MQ--------V-SEFWSLG---------------FSPLPISAI 339 (693)
Q Consensus 302 ~~~p~ivv~NK~D~~~~~~------------------~~--------~-~~~~~~g---------------~~~v~iSA~ 339 (693)
.+.|+++|+||+|+..... .. . ..+...| .+++++||.
T Consensus 122 ~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~ 201 (586)
T PRK04004 122 RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAK 201 (586)
T ss_pred cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCC
Confidence 5889999999999852100 00 0 0111112 257999999
Q ss_pred CCCCHHHHHHHHHhhcc
Q 005504 340 SGTGTGELLDLVCSELK 356 (693)
Q Consensus 340 ~g~gi~~Ll~~i~~~l~ 356 (693)
+|.|+++|++.+....+
T Consensus 202 tGeGi~dLl~~i~~~~~ 218 (586)
T PRK04004 202 TGEGIPDLLMVLAGLAQ 218 (586)
T ss_pred CCCChHHHHHHHHHHHH
Confidence 99999999998875443
No 339
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.66 E-value=1.2e-15 Score=148.15 Aligned_cols=150 Identities=16% Similarity=0.118 Sum_probs=100.6
Q ss_pred EEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCe--eEEEEecCCcccccCCchhhhhhhhhhhcccC
Q 005504 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (693)
Q Consensus 166 V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (693)
|+|+|.+|||||||++++.+... . ..+..+..+.....+.+++. .+.+|||||......
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------------- 61 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF-P-EDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDR----------------- 61 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCC-C-CCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccch-----------------
Confidence 57999999999999999998752 2 22223333333334455554 588999999864221
Q ss_pred CCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH--HHHHHHHhhcCCCcEEEEecccCCccchh-
Q 005504 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKGI- 320 (693)
Q Consensus 244 ~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~--~i~~~L~~~~~~~p~ivv~NK~D~~~~~~- 320 (693)
.....+..+|++|+|+|.++.-+.+.. .+...+.+...+.|+++|+||+|+.....
T Consensus 62 ---------------------~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~ 120 (174)
T smart00174 62 ---------------------LRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKST 120 (174)
T ss_pred ---------------------hchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhh
Confidence 111346789999999999875444332 24444544445899999999999865211
Q ss_pred -----------h---hHHHH-HhcCC-CCccccccCCCCHHHHHHHHHhhc
Q 005504 321 -----------M---QVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSEL 355 (693)
Q Consensus 321 -----------~---~~~~~-~~~g~-~~v~iSA~~g~gi~~Ll~~i~~~l 355 (693)
. ....+ ...+. .++++||++|.|++++++.+.+.+
T Consensus 121 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 121 LRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred hhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 0 01112 23454 789999999999999999987654
No 340
>PRK12288 GTPase RsgA; Reviewed
Probab=99.66 E-value=1.7e-15 Score=162.50 Aligned_cols=142 Identities=25% Similarity=0.313 Sum_probs=103.5
Q ss_pred HHhcCeEEEEEeCCCCCCHHHHHHHHHHHh-hcCCCcEEEEecccCCccchh----hhH-HHHHhcCCCCccccccCCCC
Q 005504 270 IEESCVIIFLVDGQAGLTAADEEIADWLRK-NYMDKFIILAVNKCESPRKGI----MQV-SEFWSLGFSPLPISAISGTG 343 (693)
Q Consensus 270 i~~adiil~VvD~~~~~~~~d~~i~~~L~~-~~~~~p~ivv~NK~D~~~~~~----~~~-~~~~~~g~~~v~iSA~~g~g 343 (693)
+.++|.+++|++.....+... +-+||.. ...+.|+++|+||+|+..... ... ..+...|+.++++||.+|.|
T Consensus 118 aANvD~vlIV~s~~p~~s~~~--Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~G 195 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNI--IDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEG 195 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHH--HHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcC
Confidence 467899999999775555432 2223211 125789999999999975321 111 22335678899999999999
Q ss_pred HHHHHHHHHhhcccccCccchhhhccCCcEEEeecCCCCChhhHHHHHhcCCCceecCCCC-------cccceEEEEEeC
Q 005504 344 TGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISG-------TTRDAIDTEFTG 416 (693)
Q Consensus 344 i~~Ll~~i~~~l~~~~~~~~~~~~~~~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~g-------tT~d~~~~~~~~ 416 (693)
+++|++.|.. ..++|+|.||||||||+|+|++.....++.+++ ||+......+.
T Consensus 196 ideL~~~L~~------------------ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~- 256 (347)
T PRK12288 196 LEELEAALTG------------------RISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFP- 256 (347)
T ss_pred HHHHHHHHhh------------------CCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEec-
Confidence 9999988842 136899999999999999999988888887774 67766555543
Q ss_pred CCCCeEEEEeCccccchhh
Q 005504 417 PEGQKFRLIDTAGIRKRAA 435 (693)
Q Consensus 417 ~~g~~i~liDTpG~~~~~~ 435 (693)
.| ..|+||||++.+..
T Consensus 257 -~~--~~liDTPGir~~~l 272 (347)
T PRK12288 257 -HG--GDLIDSPGVREFGL 272 (347)
T ss_pred -CC--CEEEECCCCCcccC
Confidence 23 26999999998754
No 341
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=9.5e-16 Score=161.58 Aligned_cols=188 Identities=20% Similarity=0.245 Sum_probs=136.2
Q ss_pred CCcEEEeecCCCCChhhHHHHHhcCCC---------------------c---------eecCCCCcccceEEEEEeCCCC
Q 005504 370 RIPAIAIVGRPNVGKSSILNALVGEDR---------------------T---------IVSPISGTTRDAIDTEFTGPEG 419 (693)
Q Consensus 370 ~~~~I~ivG~~n~GKSSLin~llg~~~---------------------~---------~v~~~~gtT~d~~~~~~~~~~g 419 (693)
...+++++|++++|||||+-+|+=+-. + ...-..|.|.+.....+.. +.
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet-~k 84 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET-DK 84 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec-CC
Confidence 457999999999999999999972100 0 0112238999988888886 66
Q ss_pred CeEEEEeCccccchhhhccCCChhhHhHHHHHHHHHhcCCeEEEEeccccc-------CCHHHHHHHHHHHHhCC-cEEE
Q 005504 420 QKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMAC-------ITEQDCRIAERIEQEGK-GCLI 491 (693)
Q Consensus 420 ~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~-------~~~~d~~~~~~l~~~~~-p~Iv 491 (693)
..+.++|+||+++| +..++.....||++|||||+..+ ..-|..+.+-+++-.|+ .+||
T Consensus 85 ~~~tIiDaPGHrdF--------------vknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIV 150 (428)
T COG5256 85 YNFTIIDAPGHRDF--------------VKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIV 150 (428)
T ss_pred ceEEEeeCCchHHH--------------HHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEE
Confidence 68999999999886 45677788999999999999887 56677777777777776 5999
Q ss_pred EEeccCCCCCcchhhHHHHHHHHHHHHhcCCC----CcEEEeccccCCCHHHHHHHHHHHHHHhhccCCchhHHHHHHhH
Q 005504 492 VVNKWDTIPNKNQQTATYYEQDVREKLRALDW----APIVYSTAIAGQSVDKIIVAAEMVDKERSRRLSTATINQVVQEA 567 (693)
Q Consensus 492 v~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~----~piv~iSA~~g~gv~~L~~~i~~~~~~~~~~i~t~~ln~~l~~~ 567 (693)
++||||+++ +....++++...+...+..+++ ++++++||..|.|+.+.- +..++|. ...|.++
T Consensus 151 avNKMD~v~-wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s----~~~pWY~--------GpTLlea 217 (428)
T COG5256 151 AVNKMDLVS-WDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKS----ENMPWYK--------GPTLLEA 217 (428)
T ss_pred EEEcccccc-cCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccC----cCCcCcc--------CChHHHH
Confidence 999999987 6767778888777775555543 579999999999987544 1222222 1233455
Q ss_pred hhccCCCCCCCCcceeEE
Q 005504 568 VAFKSPPRTRGGRRGRVY 585 (693)
Q Consensus 568 ~~~~~~p~~~~~~~~k~~ 585 (693)
++...+|...-.+++++-
T Consensus 218 Ld~~~~p~~~~d~Plr~p 235 (428)
T COG5256 218 LDQLEPPERPLDKPLRLP 235 (428)
T ss_pred HhccCCCCCCCCCCeEeE
Confidence 555566654445555553
No 342
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.65 E-value=1.3e-15 Score=144.04 Aligned_cols=149 Identities=18% Similarity=0.172 Sum_probs=100.0
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEe--cCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW--GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~--~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (693)
+|+++|.+|+|||||+|++.+...... ..+..+.+.....+.. ....+.+|||||....
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~------------------ 62 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDEN-YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERF------------------ 62 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCc-cCCceeeeeEEEEEEECCEEEEEEEEecCChHHH------------------
Confidence 699999999999999999998764332 2333333333333344 3467899999998431
Q ss_pred CCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHH-HHHHHHHHhhc-CCCcEEEEecccCCccchh
Q 005504 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPRKGI 320 (693)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d-~~i~~~L~~~~-~~~p~ivv~NK~D~~~~~~ 320 (693)
.......++++|++++|+|..+.-+... ..+...+.... .+.|+++|+||+|+.....
T Consensus 63 --------------------~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 122 (159)
T cd00154 63 --------------------RSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQ 122 (159)
T ss_pred --------------------HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccccccc
Confidence 1334466788999999999986422222 12333333321 3589999999999962211
Q ss_pred ---hhHHHHH-hcCCCCccccccCCCCHHHHHHHHH
Q 005504 321 ---MQVSEFW-SLGFSPLPISAISGTGTGELLDLVC 352 (693)
Q Consensus 321 ---~~~~~~~-~~g~~~v~iSA~~g~gi~~Ll~~i~ 352 (693)
.....+. ..+.+++.+||.+|.|++++++.|.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 123 VSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 1122222 3466899999999999999999875
No 343
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.65 E-value=7.7e-16 Score=144.45 Aligned_cols=136 Identities=18% Similarity=0.219 Sum_probs=91.3
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCC
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (693)
+|+++|++|||||||+|+|++.... +.. |. .+.+.+ .+|||||.... ..
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~----~~~-t~-----~~~~~~---~~iDt~G~~~~---~~--------------- 50 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL----YKK-TQ-----AVEYND---GAIDTPGEYVE---NR--------------- 50 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc----ccc-ce-----eEEEcC---eeecCchhhhh---hH---------------
Confidence 6999999999999999999987531 111 11 123333 68999997320 00
Q ss_pred CCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCccchh--hh
Q 005504 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI--MQ 322 (693)
Q Consensus 245 g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~~--~~ 322 (693)
..+ +.....++++|++++|+|+.++.+..+..+.+. ..+|+++|+||+|+..... ..
T Consensus 51 ---------------~~~-~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~-----~~~p~ilv~NK~Dl~~~~~~~~~ 109 (142)
T TIGR02528 51 ---------------RLY-SALIVTAADADVIALVQSATDPESRFPPGFASI-----FVKPVIGLVTKIDLAEADVDIER 109 (142)
T ss_pred ---------------HHH-HHHHHHhhcCCEEEEEecCCCCCcCCChhHHHh-----ccCCeEEEEEeeccCCcccCHHH
Confidence 001 222245889999999999998877655433332 2459999999999864221 11
Q ss_pred HHHHH-hcCC-CCccccccCCCCHHHHHHHHH
Q 005504 323 VSEFW-SLGF-SPLPISAISGTGTGELLDLVC 352 (693)
Q Consensus 323 ~~~~~-~~g~-~~v~iSA~~g~gi~~Ll~~i~ 352 (693)
..++. ..+. +++++||++|.|+++|++.|.
T Consensus 110 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 110 AKELLETAGAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred HHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence 12222 3455 689999999999999998874
No 344
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.65 E-value=1.4e-15 Score=150.11 Aligned_cols=151 Identities=21% Similarity=0.202 Sum_probs=102.4
Q ss_pred CCeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005504 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (693)
Q Consensus 163 ~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (693)
..+|+++|.+|||||||+++|.+...... ..|.......+.+++..+.+|||||....
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~~~----~~T~~~~~~~i~~~~~~~~l~D~~G~~~~------------------ 76 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLAQH----VPTLHPTSEELTIGNIKFKTFDLGGHEQA------------------ 76 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCccc----CCccCcceEEEEECCEEEEEEECCCCHHH------------------
Confidence 46899999999999999999998753221 12334445667788899999999997531
Q ss_pred CCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCH--HHHHHHHHHHh-hcCCCcEEEEecccCCccch
Q 005504 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTA--ADEEIADWLRK-NYMDKFIILAVNKCESPRKG 319 (693)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~--~d~~i~~~L~~-~~~~~p~ivv~NK~D~~~~~ 319 (693)
...+..++..+|++++|+|+++.-+. ....+.+.++. ...+.|+++|+||+|+....
T Consensus 77 --------------------~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~ 136 (190)
T cd00879 77 --------------------RRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAV 136 (190)
T ss_pred --------------------HHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCc
Confidence 12334667889999999999864222 12223333321 12468999999999986421
Q ss_pred h-hhHHHHHh-----------------cCCCCccccccCCCCHHHHHHHHHhhc
Q 005504 320 I-MQVSEFWS-----------------LGFSPLPISAISGTGTGELLDLVCSEL 355 (693)
Q Consensus 320 ~-~~~~~~~~-----------------~g~~~v~iSA~~g~gi~~Ll~~i~~~l 355 (693)
. .....+.+ ....++++||++|.|+++++++|.+.+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 137 SEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred CHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence 1 11111111 112479999999999999999997653
No 345
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.65 E-value=1.9e-15 Score=152.78 Aligned_cols=160 Identities=14% Similarity=0.147 Sum_probs=104.1
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCC--CeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
.||+++|.+|||||||++++++... ...+..|..+.....+.. ++ ..+.+|||+|..++..+.
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f--~~~y~pTi~~~~~~~~~~-~~~~v~L~iwDt~G~e~~~~l~------------ 66 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAY--PGSYVPTVFENYTASFEI-DKRRIELNMWDTSGSSYYDNVR------------ 66 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CCccCCccccceEEEEEE-CCEEEEEEEEeCCCcHHHHHHh------------
Confidence 5899999999999999999997542 222333333333333433 33 368889999986543221
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHH--HHHHHHHH--hCCcEEEEEeccCCCCCcchh-hH-----HHHHHHHHHHHh
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQ--EGKGCLIVVNKWDTIPNKNQQ-TA-----TYYEQDVREKLR 519 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~--~~~~~l~~--~~~p~Ivv~NK~Dl~~~~~~~-~~-----~~~~~~i~~~l~ 519 (693)
-.+++.+|++|+|+|.++..+.+.. .|...+.. .+.|+|+|+||+|+....... .. ..+..+-...+.
T Consensus 67 --~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~a 144 (222)
T cd04173 67 --PLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLA 144 (222)
T ss_pred --HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHH
Confidence 1257899999999999987665554 24444443 368999999999995421100 00 001111122222
Q ss_pred -cCCCCcEEEeccccCCC-HHHHHHHHHHHH
Q 005504 520 -ALDWAPIVYSTAIAGQS-VDKIIVAAEMVD 548 (693)
Q Consensus 520 -~~~~~piv~iSA~~g~g-v~~L~~~i~~~~ 548 (693)
..+..+++++||+++.| |+++|..+..+.
T Consensus 145 k~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~ 175 (222)
T cd04173 145 KQVGAVSYVECSSRSSERSVRDVFHVATVAS 175 (222)
T ss_pred HHcCCCEEEEcCCCcCCcCHHHHHHHHHHHH
Confidence 33335899999999985 999999987753
No 346
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.65 E-value=2.6e-15 Score=143.00 Aligned_cols=150 Identities=19% Similarity=0.196 Sum_probs=104.6
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (693)
+|+++|.+|||||||++++++.. ....+.+++.+.......+++ ..+.+|||||....
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~------------------ 60 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEF------------------ 60 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHH------------------
Confidence 48999999999999999999875 445555666666555566664 56889999997541
Q ss_pred CCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHH-HHHHHHHHhhc--CCCcEEEEecccCCccch
Q 005504 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY--MDKFIILAVNKCESPRKG 319 (693)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d-~~i~~~L~~~~--~~~p~ivv~NK~D~~~~~ 319 (693)
.......+..+|++++|+|..+..+..+ ..+...+.... .+.|+++|+||+|+....
T Consensus 61 --------------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 120 (160)
T cd00876 61 --------------------SAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENER 120 (160)
T ss_pred --------------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccc
Confidence 1233356788999999999876433222 12233332211 378999999999987522
Q ss_pred h---hhHHHH-HhcCCCCccccccCCCCHHHHHHHHHhh
Q 005504 320 I---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSE 354 (693)
Q Consensus 320 ~---~~~~~~-~~~g~~~v~iSA~~g~gi~~Ll~~i~~~ 354 (693)
. .....+ ...+.+++++||.+|.|+.++++.|.+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 121 QVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred eecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 1 112222 3345678999999999999999999764
No 347
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.65 E-value=1.9e-15 Score=148.77 Aligned_cols=154 Identities=17% Similarity=0.074 Sum_probs=102.0
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEec-C--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG-E--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~-~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (693)
+|+++|.+|||||||++++.+... . ..+..++.......+... + ..+.+|||||...+.
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~-~-~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~---------------- 63 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKF-P-EEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYD---------------- 63 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcC-C-CCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHH----------------
Confidence 699999999999999999998752 2 222222222222233333 3 468999999975421
Q ss_pred cCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHH--HHHHHHhhcCCCcEEEEecccCCccch
Q 005504 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE--IADWLRKNYMDKFIILAVNKCESPRKG 319 (693)
Q Consensus 242 ~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~--i~~~L~~~~~~~p~ivv~NK~D~~~~~ 319 (693)
.....+++.+|++++|+|.++..+.++.. +...++....+.|+++|+||+|+....
T Consensus 64 ----------------------~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 121 (187)
T cd04132 64 ----------------------RLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDK 121 (187)
T ss_pred ----------------------HHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCc
Confidence 11223567899999999998765544331 223333323478999999999986532
Q ss_pred -------hhhHHH-HHhcCC-CCccccccCCCCHHHHHHHHHhhcccc
Q 005504 320 -------IMQVSE-FWSLGF-SPLPISAISGTGTGELLDLVCSELKKV 358 (693)
Q Consensus 320 -------~~~~~~-~~~~g~-~~v~iSA~~g~gi~~Ll~~i~~~l~~~ 358 (693)
...... ....+. .++++||++|.|+.+++..+.+.+...
T Consensus 122 ~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~ 169 (187)
T cd04132 122 NLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEALKK 169 (187)
T ss_pred cccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHHHhh
Confidence 111122 223565 789999999999999999998876543
No 348
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.65 E-value=1.2e-15 Score=174.88 Aligned_cols=151 Identities=27% Similarity=0.365 Sum_probs=110.1
Q ss_pred cCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchh
Q 005504 170 GRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLA 249 (693)
Q Consensus 170 G~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 249 (693)
|.||||||||+|+|+|.+ ..++++||+|.+...+.+.+++..+.+|||||+.+......+
T Consensus 1 G~pNvGKSSL~N~Ltg~~-~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~------------------- 60 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN-QTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLE------------------- 60 (591)
T ss_pred CCCCCCHHHHHHHHhCCC-CeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchH-------------------
Confidence 899999999999999986 578999999999999989999999999999999764321110
Q ss_pred hHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCccchhh--hHHH-H
Q 005504 250 TREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM--QVSE-F 326 (693)
Q Consensus 250 ~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~~~--~~~~-~ 326 (693)
+.+.+.. .....+|++++|+|+++. . .+......+.+ .++|+++|+||+|+.++... .... .
T Consensus 61 ----------e~v~~~~-l~~~~aDvvI~VvDat~l-e-r~l~l~~ql~~--~~~PiIIVlNK~Dl~~~~~i~~d~~~L~ 125 (591)
T TIGR00437 61 ----------EEVARDY-LLNEKPDLVVNVVDASNL-E-RNLYLTLQLLE--LGIPMILALNLVDEAEKKGIRIDEEKLE 125 (591)
T ss_pred ----------HHHHHHH-HhhcCCCEEEEEecCCcc-h-hhHHHHHHHHh--cCCCEEEEEehhHHHHhCCChhhHHHHH
Confidence 0011111 112468999999999863 2 22333334444 47999999999998643211 1111 2
Q ss_pred HhcCCCCccccccCCCCHHHHHHHHHhhc
Q 005504 327 WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (693)
Q Consensus 327 ~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l 355 (693)
..+|.+++++||++|.|++++++.+.+..
T Consensus 126 ~~lg~pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 126 ERLGVPVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred HHcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34577899999999999999999998754
No 349
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=9.3e-16 Score=144.26 Aligned_cols=156 Identities=16% Similarity=0.103 Sum_probs=111.7
Q ss_pred CcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeC-CCCCeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTG-PEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 371 ~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~-~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
.+|+.++|..|||||.|+-++..+....+.+ ....++.....+.. ....++++|||+|+.+|.++.
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd-~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~------------ 72 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHD-LTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVT------------ 72 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCcccccc-ceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHH------------
Confidence 4799999999999999999999775443333 22223333333332 133489999999998875543
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHHH-HHHHHHHh---CCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCc
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~~-~~~~l~~~---~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~p 525 (693)
..+++.+-.+|||+|.++..+...+. |+..++.. +.-+++++||+||...+... ++-.+.+....+..
T Consensus 73 --~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs------~EEGeaFA~ehgLi 144 (216)
T KOG0098|consen 73 --RSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVS------KEEGEAFAREHGLI 144 (216)
T ss_pred --HHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhcccccc------HHHHHHHHHHcCce
Confidence 23689999999999999987777664 66666654 56799999999997654322 22334444445678
Q ss_pred EEEeccccCCCHHHHHHHHHHH
Q 005504 526 IVYSTAIAGQSVDKIIVAAEMV 547 (693)
Q Consensus 526 iv~iSA~~g~gv~~L~~~i~~~ 547 (693)
+..+||+++.||++.|......
T Consensus 145 fmETSakt~~~VEEaF~nta~~ 166 (216)
T KOG0098|consen 145 FMETSAKTAENVEEAFINTAKE 166 (216)
T ss_pred eehhhhhhhhhHHHHHHHHHHH
Confidence 8899999999999999776543
No 350
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.65 E-value=2.6e-15 Score=143.23 Aligned_cols=152 Identities=18% Similarity=0.183 Sum_probs=101.5
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (693)
+|+++|.+|+|||||+|++++..... ...+.++.+.......+.+ ..+.+|||||....
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~------------------ 62 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNE-KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERY------------------ 62 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CcCCccceeEEEEEEEECCEEEEEEEEECCchHHH------------------
Confidence 69999999999999999999876322 2233343444444445544 35889999996431
Q ss_pred CCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH-HHHHHHHhh-cCCCcEEEEecccCCccchh
Q 005504 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPRKGI 320 (693)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~-~i~~~L~~~-~~~~p~ivv~NK~D~~~~~~ 320 (693)
.......+..+|++++|+|..++-+.++. .+.+.++.. ..+.|+++|+||+|+.....
T Consensus 63 --------------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~ 122 (162)
T cd04123 63 --------------------HALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRV 122 (162)
T ss_pred --------------------HHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccC
Confidence 12223456789999999998875443332 222233321 12689999999999874321
Q ss_pred h---hHHH-HHhcCCCCccccccCCCCHHHHHHHHHhhc
Q 005504 321 M---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (693)
Q Consensus 321 ~---~~~~-~~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l 355 (693)
. .... ....+..++++||.+|.|+++++++|.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 123 VSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred CCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 1 1111 233566789999999999999999997653
No 351
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.65 E-value=1.6e-15 Score=146.44 Aligned_cols=152 Identities=14% Similarity=0.125 Sum_probs=99.2
Q ss_pred EEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHHHH
Q 005504 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (693)
Q Consensus 373 ~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~~ 452 (693)
.|+++|.+|||||||++++.+.... ....|....+. ..+.. .+..+.+|||||..++..+ ..
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~-~~~~pt~g~~~--~~i~~-~~~~l~i~Dt~G~~~~~~~--------------~~ 62 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSL-ESVVPTTGFNS--VAIPT-QDAIMELLEIGGSQNLRKY--------------WK 62 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCc-ccccccCCcce--EEEee-CCeEEEEEECCCCcchhHH--------------HH
Confidence 3799999999999999999976421 22222222222 23332 5678999999998765332 22
Q ss_pred HHHhcCCeEEEEecccccCCHHH-HHHHHHHHH--hCCcEEEEEeccCCCCCcchhhHHHHHHHH-HHHHhcCCCCcEEE
Q 005504 453 RAIRRSDVVALVIEAMACITEQD-CRIAERIEQ--EGKGCLIVVNKWDTIPNKNQQTATYYEQDV-REKLRALDWAPIVY 528 (693)
Q Consensus 453 ~~i~~aDvvllViDa~~~~~~~d-~~~~~~l~~--~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i-~~~l~~~~~~piv~ 528 (693)
.+++.+|++|+|+|+++..+... ..++..+.. .++|+++|+||+|+...... ..+...+ ...+..-...++++
T Consensus 63 ~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~~~ 139 (164)
T cd04162 63 RYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSV---QEIHKELELEPIARGRRWILQG 139 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCH---HHHHHHhCChhhcCCCceEEEE
Confidence 46899999999999987543222 234444432 47999999999998654321 1222221 12222223467888
Q ss_pred ecccc------CCCHHHHHHHHH
Q 005504 529 STAIA------GQSVDKIIVAAE 545 (693)
Q Consensus 529 iSA~~------g~gv~~L~~~i~ 545 (693)
+||++ ++||+++|+.+.
T Consensus 140 ~Sa~~~~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 140 TSLDDDGSPSRMEAVKDLLSQLI 162 (164)
T ss_pred eeecCCCChhHHHHHHHHHHHHh
Confidence 99888 999999998775
No 352
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.65 E-value=1.2e-15 Score=157.03 Aligned_cols=164 Identities=25% Similarity=0.319 Sum_probs=121.5
Q ss_pred CCeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEe-cCeeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005504 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW-GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (693)
Q Consensus 163 ~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~-~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (693)
..-|++||.||+|||||++++...+ ..+.+||+||..+..+.+.. .+..|++-|.||+.+.......+
T Consensus 159 lADVGLVG~PNaGKSTlls~vS~Ak-PKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GL---------- 227 (369)
T COG0536 159 LADVGLVGLPNAGKSTLLSAVSAAK-PKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGL---------- 227 (369)
T ss_pred ecccccccCCCCcHHHHHHHHhhcC-CcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCc----------
Confidence 3579999999999999999999886 78899999999999999986 45679999999998754433322
Q ss_pred cCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCC---HHHH-HHHHHHHh---hcCCCcEEEEecccC
Q 005504 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLT---AADE-EIADWLRK---NYMDKFIILAVNKCE 314 (693)
Q Consensus 242 ~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~---~~d~-~i~~~L~~---~~~~~p~ivv~NK~D 314 (693)
-.++++++++|.++++|+|.+..-. .++. .+...|.+ ...++|.++|+||+|
T Consensus 228 ---------------------G~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD 286 (369)
T COG0536 228 ---------------------GLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKID 286 (369)
T ss_pred ---------------------cHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccC
Confidence 2567899999999999999875321 2232 33444444 236899999999999
Q ss_pred Cccchh--hhHHHHHh--cCCCC-ccccccCCCCHHHHHHHHHhhcccc
Q 005504 315 SPRKGI--MQVSEFWS--LGFSP-LPISAISGTGTGELLDLVCSELKKV 358 (693)
Q Consensus 315 ~~~~~~--~~~~~~~~--~g~~~-v~iSA~~g~gi~~Ll~~i~~~l~~~ 358 (693)
...... ........ .+... ++|||.++.|+++|+..+.+.+.+.
T Consensus 287 ~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 287 LPLDEEELEELKKALAEALGWEVFYLISALTREGLDELLRALAELLEET 335 (369)
T ss_pred CCcCHHHHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHHHHHHh
Confidence 554321 12222222 23332 2399999999999999999888754
No 353
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.65 E-value=1.2e-15 Score=151.58 Aligned_cols=155 Identities=17% Similarity=0.095 Sum_probs=98.8
Q ss_pred cEEEeecCCCCChhhHHH-HHhcCCC---ceecCCCCccc--ceEEEEE--------eC-CCCCeEEEEeCccccchhhh
Q 005504 372 PAIAIVGRPNVGKSSILN-ALVGEDR---TIVSPISGTTR--DAIDTEF--------TG-PEGQKFRLIDTAGIRKRAAI 436 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin-~llg~~~---~~v~~~~gtT~--d~~~~~~--------~~-~~g~~i~liDTpG~~~~~~~ 436 (693)
.||+++|.+|||||||++ ++.+... .....+..|.. +...... .. .....+.+|||||+.+. .
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--~ 80 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--D 80 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--h
Confidence 699999999999999996 5543211 01122222221 2111110 11 12347899999998541 0
Q ss_pred ccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHH--HHHHHHHH--hCCcEEEEEeccCCCCCc----------
Q 005504 437 ASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQ--EGKGCLIVVNKWDTIPNK---------- 502 (693)
Q Consensus 437 ~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~--~~~~~l~~--~~~p~Ivv~NK~Dl~~~~---------- 502 (693)
...+++.||++|+|+|.++..+.++. .|+..+.. .+.|+|+|+||+||....
T Consensus 81 --------------~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~ 146 (195)
T cd01873 81 --------------RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRP 146 (195)
T ss_pred --------------hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccc
Confidence 01257899999999999988777665 36676655 368999999999985411
Q ss_pred -------chhhHHHHHHHHHHHHhcCCCCcEEEeccccCCCHHHHHHHHHH
Q 005504 503 -------NQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKIIVAAEM 546 (693)
Q Consensus 503 -------~~~~~~~~~~~i~~~l~~~~~~piv~iSA~~g~gv~~L~~~i~~ 546 (693)
..... .++.. .+....+++++++||++|.||+++|+.+.+
T Consensus 147 ~~~~~~~~~~V~---~~e~~-~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 147 LARPIKNADILP---PETGR-AVAKELGIPYYETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred cccccccCCccC---HHHHH-HHHHHhCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 00110 11222 222223469999999999999999998865
No 354
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.65 E-value=3.1e-15 Score=148.96 Aligned_cols=169 Identities=20% Similarity=0.235 Sum_probs=113.1
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCce-ec---CCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTI-VS---PISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALS 447 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~-v~---~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~ 447 (693)
.+|+++|++|||||||+|+|+|..... .. ....+|+... .+.......+.+|||||+.+... ..+.+.
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~l~l~DtpG~~~~~~------~~~~~l 73 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRT--PYPHPKFPNVTLWDLPGIGSTAF------PPDDYL 73 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCce--eeecCCCCCceEEeCCCCCcccC------CHHHHH
Confidence 689999999999999999999854221 11 1112333322 22222345789999999875321 112221
Q ss_pred HHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcc----------hhhHHHHHHHHHHH
Q 005504 448 VNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKN----------QQTATYYEQDVREK 517 (693)
Q Consensus 448 ~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~----------~~~~~~~~~~i~~~ 517 (693)
.+ ..+..+|++++|.| .+++..+..+++.+.+.++|+++|+||||+..... ....+++.+.+...
T Consensus 74 -~~--~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 148 (197)
T cd04104 74 -EE--MKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLEN 148 (197)
T ss_pred -HH--hCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHH
Confidence 11 12567899999865 46889999999999999999999999999854211 12233444445555
Q ss_pred Hhc--CCCCcEEEeccc--cCCCHHHHHHHHHHHHHHhhc
Q 005504 518 LRA--LDWAPIVYSTAI--AGQSVDKIIVAAEMVDKERSR 553 (693)
Q Consensus 518 l~~--~~~~piv~iSA~--~g~gv~~L~~~i~~~~~~~~~ 553 (693)
+.. ....+++.+|+. .++|+..|.+.+...+..+.+
T Consensus 149 ~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~ 188 (197)
T cd04104 149 LQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKR 188 (197)
T ss_pred HHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHH
Confidence 543 334689999998 689999999999887665444
No 355
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.65 E-value=1.8e-15 Score=166.88 Aligned_cols=161 Identities=21% Similarity=0.211 Sum_probs=109.2
Q ss_pred CcEEEeecCCCCChhhHHHHHhcCCC--ceecCCCCcccceEEEEEe--------------C-----------CCCCeEE
Q 005504 371 IPAIAIVGRPNVGKSSILNALVGEDR--TIVSPISGTTRDAIDTEFT--------------G-----------PEGQKFR 423 (693)
Q Consensus 371 ~~~I~ivG~~n~GKSSLin~llg~~~--~~v~~~~gtT~d~~~~~~~--------------~-----------~~g~~i~ 423 (693)
..+|+++|++|+|||||+++|.+... .......|+|.+.-...+. . ..+..+.
T Consensus 4 ~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 83 (406)
T TIGR03680 4 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVS 83 (406)
T ss_pred eEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEE
Confidence 47899999999999999999986421 1011122444332211100 0 0146799
Q ss_pred EEeCccccchhhhccCCChhhHhHHHHHHHHHhcCCeEEEEecccccC-CHHHHHHHHHHHHhC-CcEEEEEeccCCCCC
Q 005504 424 LIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACI-TEQDCRIAERIEQEG-KGCLIVVNKWDTIPN 501 (693)
Q Consensus 424 liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~-~~~d~~~~~~l~~~~-~p~Ivv~NK~Dl~~~ 501 (693)
+|||||+.++ ...+...+..+|++++|+|+.++. ..+..+.+..+...+ +|+|+|+||+|+...
T Consensus 84 liDtPGh~~f--------------~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~ 149 (406)
T TIGR03680 84 FVDAPGHETL--------------MATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSK 149 (406)
T ss_pred EEECCCHHHH--------------HHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCH
Confidence 9999998664 234566678899999999999887 677777777776666 469999999999753
Q ss_pred cchhhHHHHHHHHHHHHhc--CCCCcEEEeccccCCCHHHHHHHHHHHH
Q 005504 502 KNQQTATYYEQDVREKLRA--LDWAPIVYSTAIAGQSVDKIIVAAEMVD 548 (693)
Q Consensus 502 ~~~~~~~~~~~~i~~~l~~--~~~~piv~iSA~~g~gv~~L~~~i~~~~ 548 (693)
.. ..+..+++.+.+.. ....|++++||++|.|+++|++.+....
T Consensus 150 ~~---~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 150 EK---ALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred HH---HHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 21 11122333333332 2257899999999999999999998653
No 356
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.65 E-value=1.6e-15 Score=146.12 Aligned_cols=152 Identities=17% Similarity=0.204 Sum_probs=102.9
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCe--eEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (693)
+|+++|.+|||||||++++++.. ....+++++.........+++. .+.+|||||......
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------------- 62 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR--FIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADT---------------- 62 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCc--cccccCCChHHhceEEEEECCEEEEEEEEECCCCccccc----------------
Confidence 48999999999999999998754 2344455443343444556654 578999999864110
Q ss_pred CCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH-HHHHHHHhh---cCCCcEEEEecccCCccc
Q 005504 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN---YMDKFIILAVNKCESPRK 318 (693)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~-~i~~~L~~~---~~~~p~ivv~NK~D~~~~ 318 (693)
......+..+|++++|+|+.++-+.... .+..++... ..+.|+++|+||+|+...
T Consensus 63 ---------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 121 (165)
T cd04146 63 ---------------------EQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHY 121 (165)
T ss_pred ---------------------chHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHh
Confidence 1123567889999999999876443322 234444432 247899999999998543
Q ss_pred hh---hhHHHH-HhcCCCCccccccCC-CCHHHHHHHHHhhc
Q 005504 319 GI---MQVSEF-WSLGFSPLPISAISG-TGTGELLDLVCSEL 355 (693)
Q Consensus 319 ~~---~~~~~~-~~~g~~~v~iSA~~g-~gi~~Ll~~i~~~l 355 (693)
.. .....+ ...+..++++||.+| .|+++++..+.+.+
T Consensus 122 ~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 122 RQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred CccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHHHHHH
Confidence 21 111122 235667899999999 49999999998755
No 357
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.65 E-value=1.6e-15 Score=151.01 Aligned_cols=152 Identities=14% Similarity=0.095 Sum_probs=103.0
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (693)
+|+++|.+|||||||++++++... ...+..++.+.....+.+.+ ..+.+|||||...+.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~----------------- 61 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTF--EPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFP----------------- 61 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--CccCCCchhhheeEEEEECCEEEEEEEEECCCchhhh-----------------
Confidence 489999999999999999998752 23344444444444556666 568899999986421
Q ss_pred CCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH-HHHHHHHhh--cCCCcEEEEecccCCccc-
Q 005504 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESPRK- 318 (693)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~-~i~~~L~~~--~~~~p~ivv~NK~D~~~~- 318 (693)
.....++..+|+++||+|+.++.+.+.. .+...+.+. ..+.|+++|+||+|+...
T Consensus 62 ---------------------~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~ 120 (198)
T cd04147 62 ---------------------AMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEE 120 (198)
T ss_pred ---------------------HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccccc
Confidence 1223467889999999999875443322 222222221 136899999999998652
Q ss_pred hhh---hHHHHH--hcCCCCccccccCCCCHHHHHHHHHhhcc
Q 005504 319 GIM---QVSEFW--SLGFSPLPISAISGTGTGELLDLVCSELK 356 (693)
Q Consensus 319 ~~~---~~~~~~--~~g~~~v~iSA~~g~gi~~Ll~~i~~~l~ 356 (693)
... ...... ..+..++++||.+|.|++++++.|.+.+.
T Consensus 121 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 121 RQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred ccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence 211 111111 23446789999999999999999998765
No 358
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.65 E-value=2.6e-15 Score=153.62 Aligned_cols=113 Identities=21% Similarity=0.292 Sum_probs=90.1
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeee-----------------cCCCCceeeeEEEEEEecCeeEEEEecCCcccccCC
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIV-----------------VDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKS 227 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v-----------------~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~ 227 (693)
.|+++|++|+|||||+++|+.....+. ....++|.......+.|++.++.+|||||+.++
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f--- 77 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDF--- 77 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccch---
Confidence 489999999999999999986422110 112345566667778899999999999999642
Q ss_pred chhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEE
Q 005504 228 QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFII 307 (693)
Q Consensus 228 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~i 307 (693)
...+..+++.+|.+++|+|+..+...+...+++++.+ .++|++
T Consensus 78 -----------------------------------~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~--~~~P~i 120 (237)
T cd04168 78 -----------------------------------IAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRK--LNIPTI 120 (237)
T ss_pred -----------------------------------HHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEE
Confidence 1345578899999999999999999888888888877 489999
Q ss_pred EEecccCCcc
Q 005504 308 LAVNKCESPR 317 (693)
Q Consensus 308 vv~NK~D~~~ 317 (693)
+|+||+|+..
T Consensus 121 ivvNK~D~~~ 130 (237)
T cd04168 121 IFVNKIDRAG 130 (237)
T ss_pred EEEECccccC
Confidence 9999999874
No 359
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.65 E-value=2.3e-15 Score=147.78 Aligned_cols=149 Identities=21% Similarity=0.299 Sum_probs=101.2
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhcccC
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (693)
.+|+++|.+|||||||++++...... ...|++. .....+.+.+..+.+|||||...
T Consensus 18 ~ki~ivG~~~~GKTsl~~~l~~~~~~--~~~pt~g--~~~~~~~~~~~~~~i~D~~Gq~~-------------------- 73 (181)
T PLN00223 18 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIG--FNVETVEYKNISFTVWDVGGQDK-------------------- 73 (181)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCc--cccCCcc--eeEEEEEECCEEEEEEECCCCHH--------------------
Confidence 57999999999999999999865432 2223322 23334567788999999999743
Q ss_pred CCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHH--HHHHHHHHh-hcCCCcEEEEecccCCccchh
Q 005504 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRK-NYMDKFIILAVNKCESPRKGI 320 (693)
Q Consensus 244 ~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d--~~i~~~L~~-~~~~~p~ivv~NK~D~~~~~~ 320 (693)
+...+..+++.+|++|||+|+++..+... .++.+++.. ...+.|+++|+||+|+.....
T Consensus 74 ------------------~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~ 135 (181)
T PLN00223 74 ------------------IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN 135 (181)
T ss_pred ------------------HHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCC
Confidence 12344567889999999999986533322 123333322 124689999999999875421
Q ss_pred h-hHHHHHhcCC--------CCccccccCCCCHHHHHHHHHhhcc
Q 005504 321 M-QVSEFWSLGF--------SPLPISAISGTGTGELLDLVCSELK 356 (693)
Q Consensus 321 ~-~~~~~~~~g~--------~~v~iSA~~g~gi~~Ll~~i~~~l~ 356 (693)
. ...+ .+++ .++++||++|.|+.+++++|.+.+.
T Consensus 136 ~~~~~~--~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~ 178 (181)
T PLN00223 136 AAEITD--KLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
T ss_pred HHHHHH--HhCccccCCCceEEEeccCCCCCCHHHHHHHHHHHHh
Confidence 1 1111 2232 2458999999999999999987654
No 360
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.65 E-value=2.3e-15 Score=145.31 Aligned_cols=153 Identities=17% Similarity=0.122 Sum_probs=104.5
Q ss_pred CCeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005504 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (693)
Q Consensus 163 ~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~ 240 (693)
.++|+++|.+|||||||++++++... .....++++.+.....+.+.+ ..+.+|||||....
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---------------- 69 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLF-PPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERF---------------- 69 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHH----------------
Confidence 46899999999999999999996542 223344455556666667777 45788999997531
Q ss_pred ccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH-HHHHHHHhhc-CCCcEEEEecccCCccc
Q 005504 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-MDKFIILAVNKCESPRK 318 (693)
Q Consensus 241 ~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~-~i~~~L~~~~-~~~p~ivv~NK~D~~~~ 318 (693)
......++..+|++++|+|.+++.+.... .+...++... .+.|+++|+||+|+...
T Consensus 70 ----------------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~ 127 (169)
T cd04114 70 ----------------------RSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAER 127 (169)
T ss_pred ----------------------HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 12334677889999999999865443221 2222233321 36889999999998643
Q ss_pred hhh---hHHHHHh-cCCCCccccccCCCCHHHHHHHHHhh
Q 005504 319 GIM---QVSEFWS-LGFSPLPISAISGTGTGELLDLVCSE 354 (693)
Q Consensus 319 ~~~---~~~~~~~-~g~~~v~iSA~~g~gi~~Ll~~i~~~ 354 (693)
... ....+.. ....++++||.+|.|++++++.|.+.
T Consensus 128 ~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 128 REVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACR 167 (169)
T ss_pred cccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 211 1122322 23468999999999999999999764
No 361
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.65 E-value=2.1e-15 Score=145.71 Aligned_cols=150 Identities=19% Similarity=0.126 Sum_probs=100.3
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEe--cCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW--GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~--~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (693)
+|+++|.+|||||||+|++.+.+.. ..++.+.... .....+ .+..+.+|||||.....
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~----------------- 61 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFP--ENVPRVLPEI-TIPADVTPERVPTTIVDTSSRPQDR----------------- 61 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC--ccCCCcccce-EeeeeecCCeEEEEEEeCCCchhhh-----------------
Confidence 6899999999999999999987532 2333322221 111122 34678999999985311
Q ss_pred CCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH--HHHHHHHhhcCCCcEEEEecccCCccchh
Q 005504 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKGI 320 (693)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~--~i~~~L~~~~~~~p~ivv~NK~D~~~~~~ 320 (693)
..+...+..+|++++|+|+.++.+.... .+...++....+.|+++|+||+|+.+...
T Consensus 62 ---------------------~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~ 120 (166)
T cd01893 62 ---------------------ANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSS 120 (166)
T ss_pred ---------------------HHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccc
Confidence 1223456889999999999876555442 34455554334789999999999865432
Q ss_pred h----hHH-HH-Hhc-CC-CCccccccCCCCHHHHHHHHHhhc
Q 005504 321 M----QVS-EF-WSL-GF-SPLPISAISGTGTGELLDLVCSEL 355 (693)
Q Consensus 321 ~----~~~-~~-~~~-g~-~~v~iSA~~g~gi~~Ll~~i~~~l 355 (693)
. ... .+ ... +. .++++||.+|.|++++++.+.+.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 121 QAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred hhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHHHh
Confidence 1 111 11 111 22 688999999999999999987654
No 362
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.65 E-value=2.4e-15 Score=146.16 Aligned_cols=154 Identities=19% Similarity=0.105 Sum_probs=102.1
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (693)
+|+++|.+|||||||++++.+.. ......|.+..+.....+..+| ..+.+|||||...+.
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------------- 63 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDV-FDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFK----------------- 63 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHH-----------------
Confidence 68999999999999999999875 2222234444444444455555 468999999985421
Q ss_pred CCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHH-HHHHHHHHh-hc-CCCcEEEEecccCCccch
Q 005504 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRK-NY-MDKFIILAVNKCESPRKG 319 (693)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d-~~i~~~L~~-~~-~~~p~ivv~NK~D~~~~~ 319 (693)
.....+++.+|++++|+|+.+..+... ..+.+.+.+ .. ...|+++|+||+|+....
T Consensus 64 ---------------------~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~ 122 (170)
T cd04108 64 ---------------------CIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPA 122 (170)
T ss_pred ---------------------hhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccc
Confidence 233466789999999999986422221 122332222 11 235689999999985432
Q ss_pred hh-----hHHH-HHhcCCCCccccccCCCCHHHHHHHHHhhccc
Q 005504 320 IM-----QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (693)
Q Consensus 320 ~~-----~~~~-~~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l~~ 357 (693)
.. .... ...++..++++||.+|.|++++++.|.+.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 123 QYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred cccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 11 1111 22345578999999999999999999887654
No 363
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.64 E-value=3.1e-15 Score=153.95 Aligned_cols=152 Identities=16% Similarity=0.167 Sum_probs=103.7
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (693)
+|+++|.+|||||||++++++... ...+.+++.+.....+.+++ ..+.||||+|...+.
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f--~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~----------------- 62 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRF--EEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFP----------------- 62 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC--CCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhh-----------------
Confidence 699999999999999999987652 23444444455555556666 457899999975421
Q ss_pred CCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH-HHHHHHHh----------hcCCCcEEEEec
Q 005504 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRK----------NYMDKFIILAVN 311 (693)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~-~i~~~L~~----------~~~~~p~ivv~N 311 (693)
.....++..+|++|+|+|..+..+.+.. .+.+.+.. ...+.|+|+|+|
T Consensus 63 ---------------------~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgN 121 (247)
T cd04143 63 ---------------------AMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGN 121 (247)
T ss_pred ---------------------HHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEE
Confidence 1112356789999999999875443322 23333322 113689999999
Q ss_pred ccCCccchhhhH---HHHHh--cCCCCccccccCCCCHHHHHHHHHhhcc
Q 005504 312 KCESPRKGIMQV---SEFWS--LGFSPLPISAISGTGTGELLDLVCSELK 356 (693)
Q Consensus 312 K~D~~~~~~~~~---~~~~~--~g~~~v~iSA~~g~gi~~Ll~~i~~~l~ 356 (693)
|+|+........ ..+.. .+..++++||++|.|+++|++.|.....
T Consensus 122 K~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~~~ 171 (247)
T cd04143 122 KADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLAK 171 (247)
T ss_pred CccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 999874222222 22222 2346899999999999999999998664
No 364
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.64 E-value=3.9e-15 Score=170.84 Aligned_cols=157 Identities=22% Similarity=0.281 Sum_probs=116.0
Q ss_pred CCeEEEEcCCCCChhhHHHHhhcCceee--------e------cCCCCceeeeEEEEEEec-----CeeEEEEecCCccc
Q 005504 163 LPRVAIVGRPNVGKSALFNRLVGGNRAI--------V------VDEPGVTRDRMYGRSFWG-----EHEFMLVDTGGVLN 223 (693)
Q Consensus 163 ~~~V~ivG~~nvGKSsL~n~l~~~~~~~--------v------~~~~~~T~~~~~~~~~~~-----~~~~~lvDTpG~~~ 223 (693)
...|+|+||.++|||||+++|+.....+ + ....|+|.......+.|. +..+.+|||||+.+
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 4689999999999999999998632111 1 123477777666666664 46799999999975
Q ss_pred ccCCchhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCC
Q 005504 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (693)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~ 303 (693)
+ ...+.++++.||++|+|+|++++...++...+.++.. .+
T Consensus 87 F--------------------------------------~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~--~~ 126 (600)
T PRK05433 87 F--------------------------------------SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE--ND 126 (600)
T ss_pred H--------------------------------------HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--CC
Confidence 2 1334567889999999999999998887766666554 47
Q ss_pred CcEEEEecccCCccchhhh-HHHHHh-cCC---CCccccccCCCCHHHHHHHHHhhccccc
Q 005504 304 KFIILAVNKCESPRKGIMQ-VSEFWS-LGF---SPLPISAISGTGTGELLDLVCSELKKVE 359 (693)
Q Consensus 304 ~p~ivv~NK~D~~~~~~~~-~~~~~~-~g~---~~v~iSA~~g~gi~~Ll~~i~~~l~~~~ 359 (693)
.|+++|+||+|+....... ..++.. +++ .++++||.+|.|+++|++.|.+.++...
T Consensus 127 lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~ 187 (600)
T PRK05433 127 LEIIPVLNKIDLPAADPERVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPPK 187 (600)
T ss_pred CCEEEEEECCCCCcccHHHHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCcccc
Confidence 8999999999986532211 112221 344 3799999999999999999999888653
No 365
>PLN03110 Rab GTPase; Provisional
Probab=99.64 E-value=3.2e-15 Score=151.05 Aligned_cols=157 Identities=17% Similarity=0.138 Sum_probs=109.2
Q ss_pred CCeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005504 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (693)
Q Consensus 163 ~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~ 240 (693)
..+|+++|.+|||||||+++|.+... .....+++..+.....+.+++ ..+.||||||...+
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~-~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~---------------- 74 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEF-CLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERY---------------- 74 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHH----------------
Confidence 35899999999999999999998753 223345555555555666666 46889999997531
Q ss_pred ccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH-HHHHHHHhh-cCCCcEEEEecccCCccc
Q 005504 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPRK 318 (693)
Q Consensus 241 ~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~-~i~~~L~~~-~~~~p~ivv~NK~D~~~~ 318 (693)
......+++.++++|+|+|.++..+.+.. .+++.++.. ..+.|+++|+||+|+...
T Consensus 75 ----------------------~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 132 (216)
T PLN03110 75 ----------------------RAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHL 132 (216)
T ss_pred ----------------------HHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccc
Confidence 13344667889999999999865444332 233333332 136899999999998543
Q ss_pred hhh---hHHH-HHhcCCCCccccccCCCCHHHHHHHHHhhcccc
Q 005504 319 GIM---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (693)
Q Consensus 319 ~~~---~~~~-~~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l~~~ 358 (693)
... .... ....++.++++||.+|.|++++++.|...+...
T Consensus 133 ~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~~~i~~~ 176 (216)
T PLN03110 133 RSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHI 176 (216)
T ss_pred cCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 211 1111 123466899999999999999999998877653
No 366
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.64 E-value=4.2e-15 Score=142.90 Aligned_cols=151 Identities=15% Similarity=0.095 Sum_probs=101.7
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (693)
+|+++|.+|||||||++++++... .....+++..+.....+..++ ..+.+|||||.....
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~----------------- 63 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEF-HSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQ----------------- 63 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHH-----------------
Confidence 689999999999999999998752 222334444444444555665 457899999975311
Q ss_pred CCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH-HHHHHHHhhc-CCCcEEEEecccCCccchh
Q 005504 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-MDKFIILAVNKCESPRKGI 320 (693)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~-~i~~~L~~~~-~~~p~ivv~NK~D~~~~~~ 320 (693)
.....++..+|++++|+|..+.-+.+.. .+++.++... .+.|+++|.||+|+..+..
T Consensus 64 ---------------------~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~ 122 (161)
T cd04117 64 ---------------------TITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQ 122 (161)
T ss_pred ---------------------hhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccC
Confidence 2233567889999999998875433322 2222222322 3579999999999865321
Q ss_pred h---hHHHH-HhcCCCCccccccCCCCHHHHHHHHHhh
Q 005504 321 M---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSE 354 (693)
Q Consensus 321 ~---~~~~~-~~~g~~~v~iSA~~g~gi~~Ll~~i~~~ 354 (693)
. ....+ ...+.+++++||++|.|+++++..|.+.
T Consensus 123 v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 123 VGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred CCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 1 11222 2345678999999999999999999764
No 367
>PRK10218 GTP-binding protein; Provisional
Probab=99.64 E-value=2.9e-15 Score=171.14 Aligned_cols=157 Identities=19% Similarity=0.279 Sum_probs=122.5
Q ss_pred CCeEEEEcCCCCChhhHHHHhhcCceee---------------ecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCC
Q 005504 163 LPRVAIVGRPNVGKSALFNRLVGGNRAI---------------VVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKS 227 (693)
Q Consensus 163 ~~~V~ivG~~nvGKSsL~n~l~~~~~~~---------------v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~ 227 (693)
..+|+|+||+|+|||||+++|+.....+ .....|+|.......+.|++..+.+|||||+.++.
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~-- 82 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG-- 82 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH--
Confidence 5689999999999999999999632111 12245788888888888999999999999996521
Q ss_pred chhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEE
Q 005504 228 QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFII 307 (693)
Q Consensus 228 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~i 307 (693)
..+..+++.+|++|+|+|+..|...++..++..+.. .+.|++
T Consensus 83 ------------------------------------~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~--~gip~I 124 (607)
T PRK10218 83 ------------------------------------GEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFA--YGLKPI 124 (607)
T ss_pred ------------------------------------HHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHH--cCCCEE
Confidence 344578899999999999999999988888888776 588999
Q ss_pred EEecccCCccchhh----hHHHHH-h-------cCCCCccccccCCC----------CHHHHHHHHHhhccccc
Q 005504 308 LAVNKCESPRKGIM----QVSEFW-S-------LGFSPLPISAISGT----------GTGELLDLVCSELKKVE 359 (693)
Q Consensus 308 vv~NK~D~~~~~~~----~~~~~~-~-------~g~~~v~iSA~~g~----------gi~~Ll~~i~~~l~~~~ 359 (693)
+|+||+|+...... ...+++ . ..++++++||.+|. |+..|++.|...++...
T Consensus 125 VviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~ 198 (607)
T PRK10218 125 VVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD 198 (607)
T ss_pred EEEECcCCCCCchhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCC
Confidence 99999998653221 111121 1 23568999999998 68999999999998653
No 368
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.64 E-value=2.4e-15 Score=143.54 Aligned_cols=147 Identities=22% Similarity=0.276 Sum_probs=98.5
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCC
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (693)
+|+++|.+|||||||++++++.+...... |.......+.+.+..+.+|||||....
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~----t~~~~~~~~~~~~~~~~i~D~~G~~~~-------------------- 56 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIP----TIGFNVETVEYKNVSFTVWDVGGQDKI-------------------- 56 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCC----CcCcceEEEEECCEEEEEEECCCChhh--------------------
Confidence 48999999999999999999886222222 222333445667889999999998641
Q ss_pred CCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHH--HHHHHHHHh-hcCCCcEEEEecccCCccchhh
Q 005504 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRK-NYMDKFIILAVNKCESPRKGIM 321 (693)
Q Consensus 245 g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d--~~i~~~L~~-~~~~~p~ivv~NK~D~~~~~~~ 321 (693)
.......+..+|++++|+|+..+-+... ..+...+.. ...+.|+++|+||+|+......
T Consensus 57 ------------------~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~ 118 (158)
T cd00878 57 ------------------RPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSV 118 (158)
T ss_pred ------------------HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCH
Confidence 1223356788999999999987532221 122222221 1247899999999998753311
Q ss_pred -hHHHHHh------cCCCCccccccCCCCHHHHHHHHHh
Q 005504 322 -QVSEFWS------LGFSPLPISAISGTGTGELLDLVCS 353 (693)
Q Consensus 322 -~~~~~~~------~g~~~v~iSA~~g~gi~~Ll~~i~~ 353 (693)
....... ...+++++||++|.|++++++.|..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 119 SELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 1111211 1235899999999999999998864
No 369
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.64 E-value=3.2e-15 Score=145.02 Aligned_cols=153 Identities=17% Similarity=0.165 Sum_probs=103.4
Q ss_pred CCeEEEEcCCCCChhhHHHHhhcCceeeecCCCCce-eeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhh
Q 005504 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVT-RDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (693)
Q Consensus 163 ~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T-~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~ 239 (693)
..+|+++|.+|||||||++++++.... +..+.+++ .+.....+.++| ..+.+|||+|......
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~------------- 69 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRSFS-LNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAIL------------- 69 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhCCCCC-cccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccc-------------
Confidence 357999999999999999999987532 13344433 333334456666 4688999999864221
Q ss_pred cccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhh--cCCCcEEEEecccCCcc
Q 005504 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKN--YMDKFIILAVNKCESPR 317 (693)
Q Consensus 240 ~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~--~~~~p~ivv~NK~D~~~ 317 (693)
....+++.+|++|+|+|+.++.+. ..+..|+... ..+.|+++|+||+|+..
T Consensus 70 -------------------------~~~~~~~~~d~~llv~d~~~~~s~--~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~ 122 (169)
T cd01892 70 -------------------------LNDAELAACDVACLVYDSSDPKSF--SYCAEVYKKYFMLGEIPCLFVAAKADLDE 122 (169)
T ss_pred -------------------------cchhhhhcCCEEEEEEeCCCHHHH--HHHHHHHHHhccCCCCeEEEEEEcccccc
Confidence 122456899999999999865322 2233444321 13689999999999864
Q ss_pred chh---hhHHHH-HhcCC-CCccccccCCCCHHHHHHHHHhhcc
Q 005504 318 KGI---MQVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSELK 356 (693)
Q Consensus 318 ~~~---~~~~~~-~~~g~-~~v~iSA~~g~gi~~Ll~~i~~~l~ 356 (693)
... ....++ ..+++ .++++||.+|.|++++++.|.+.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 123 QQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred cccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHHHHHhh
Confidence 321 112223 23455 4699999999999999999987654
No 370
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.64 E-value=4.3e-15 Score=146.53 Aligned_cols=155 Identities=15% Similarity=0.129 Sum_probs=104.2
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (693)
.+|+++|.+|||||||++++.+.... ....+..+.+.....+.+++ ..+.+|||||....
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~----------------- 62 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFS-ESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERF----------------- 62 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHH-----------------
Confidence 36999999999999999999987632 22233444444444455555 45789999997531
Q ss_pred cCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH-HHHHHHHhh-cCCCcEEEEecccCCccch
Q 005504 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPRKG 319 (693)
Q Consensus 242 ~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~-~i~~~L~~~-~~~~p~ivv~NK~D~~~~~ 319 (693)
.......++.+|++++|+|..++-+.... .++..++.. ..+.|+++|+||+|+....
T Consensus 63 ---------------------~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~ 121 (188)
T cd04125 63 ---------------------RSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNK 121 (188)
T ss_pred ---------------------HhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccc
Confidence 12334667889999999999875433222 122223322 1357899999999987432
Q ss_pred hh---hHHH-HHhcCCCCccccccCCCCHHHHHHHHHhhccc
Q 005504 320 IM---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (693)
Q Consensus 320 ~~---~~~~-~~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l~~ 357 (693)
.. .... ....++.++++||++|.|++++++.+.+.+.+
T Consensus 122 ~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~~~~ 163 (188)
T cd04125 122 VVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKLIIK 163 (188)
T ss_pred cCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 11 1112 23356789999999999999999998877653
No 371
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.64 E-value=2e-15 Score=157.18 Aligned_cols=114 Identities=19% Similarity=0.275 Sum_probs=94.0
Q ss_pred eEEEEcCCCCChhhHHHHhhcCce-----eee------------cCCCCceeeeEEEEEEecCeeEEEEecCCcccccCC
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNR-----AIV------------VDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKS 227 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~-----~~v------------~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~ 227 (693)
.|+++||+|+|||||+++|+.... ..+ ....|+|.+.....+.|++..+.+|||||+.++
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df--- 77 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDF--- 77 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHH---
Confidence 489999999999999999973211 111 134588999888999999999999999998641
Q ss_pred chhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEE
Q 005504 228 QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFII 307 (693)
Q Consensus 228 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~i 307 (693)
...+..+++.+|++++|+|+..+...++..+++.+++ .++|++
T Consensus 78 -----------------------------------~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~--~~~p~i 120 (270)
T cd01886 78 -----------------------------------TIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADR--YNVPRI 120 (270)
T ss_pred -----------------------------------HHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEE
Confidence 2345678999999999999999999999999998877 588999
Q ss_pred EEecccCCccc
Q 005504 308 LAVNKCESPRK 318 (693)
Q Consensus 308 vv~NK~D~~~~ 318 (693)
+++||+|+...
T Consensus 121 vviNK~D~~~a 131 (270)
T cd01886 121 AFVNKMDRTGA 131 (270)
T ss_pred EEEECCCCCCC
Confidence 99999998753
No 372
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.64 E-value=2.3e-15 Score=152.41 Aligned_cols=155 Identities=19% Similarity=0.131 Sum_probs=103.6
Q ss_pred CCeEEEEcCCCCChhhHHHHhhcCcee-eecCCCCceeeeEEEEEEec--CeeEEEEecCCcccccCCchhhhhhhhhhh
Q 005504 163 LPRVAIVGRPNVGKSALFNRLVGGNRA-IVVDEPGVTRDRMYGRSFWG--EHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (693)
Q Consensus 163 ~~~V~ivG~~nvGKSsL~n~l~~~~~~-~v~~~~~~T~~~~~~~~~~~--~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~ 239 (693)
..+|+++|.+|||||||+++++..+.. ...++.|++. ....+..+ ...+.+|||||...+.
T Consensus 13 ~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~--~~~~~~~~~~~~~l~i~Dt~G~~~~~-------------- 76 (219)
T PLN03071 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEV--HPLDFFTNCGKIRFYCWDTAGQEKFG-------------- 76 (219)
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeE--EEEEEEECCeEEEEEEEECCCchhhh--------------
Confidence 458999999999999999998765421 1222223222 22223333 3679999999986522
Q ss_pred cccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH-HHHHHHHhhcCCCcEEEEecccCCccc
Q 005504 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRK 318 (693)
Q Consensus 240 ~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~-~i~~~L~~~~~~~p~ivv~NK~D~~~~ 318 (693)
.....+++.+|++|+|+|..+..+.... .+.+.+++...+.|+++|+||+|+...
T Consensus 77 ------------------------~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~ 132 (219)
T PLN03071 77 ------------------------GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132 (219)
T ss_pred ------------------------hhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhc
Confidence 1222456789999999999976544332 233344444457899999999998643
Q ss_pred hh-hhHHHH-HhcCCCCccccccCCCCHHHHHHHHHhhccc
Q 005504 319 GI-MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (693)
Q Consensus 319 ~~-~~~~~~-~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l~~ 357 (693)
.. .....+ ...++.++++||++|.|+++++++|.+.+.+
T Consensus 133 ~v~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~l~~~~~~ 173 (219)
T PLN03071 133 QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (219)
T ss_pred cCCHHHHHHHHhcCCEEEEcCCCCCCCHHHHHHHHHHHHHc
Confidence 21 111122 2345678999999999999999999877653
No 373
>PRK12736 elongation factor Tu; Reviewed
Probab=99.64 E-value=3.4e-15 Score=164.09 Aligned_cols=154 Identities=18% Similarity=0.164 Sum_probs=115.6
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCce------ee---------ecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCc
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNR------AI---------VVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQ 228 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~------~~---------v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~ 228 (693)
.+|+++||+|+|||||+++|++... .. .....|+|.+.....+..++..+.+|||||+.+
T Consensus 13 ~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~----- 87 (394)
T PRK12736 13 VNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHAD----- 87 (394)
T ss_pred eEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHH-----
Confidence 5799999999999999999986310 11 112568899887766667788999999999853
Q ss_pred hhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCc-EE
Q 005504 229 PNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF-II 307 (693)
Q Consensus 229 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p-~i 307 (693)
+...+...+..+|++++|+|+..|+..++.+.+.++.. .+.| +|
T Consensus 88 ---------------------------------f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~--~g~~~~I 132 (394)
T PRK12736 88 ---------------------------------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQ--VGVPYLV 132 (394)
T ss_pred ---------------------------------HHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHH--cCCCEEE
Confidence 12344567788999999999999999999999999877 4777 67
Q ss_pred EEecccCCccchh-hh-----HHHH-HhcCC-----CCccccccCCC--------CHHHHHHHHHhhccc
Q 005504 308 LAVNKCESPRKGI-MQ-----VSEF-WSLGF-----SPLPISAISGT--------GTGELLDLVCSELKK 357 (693)
Q Consensus 308 vv~NK~D~~~~~~-~~-----~~~~-~~~g~-----~~v~iSA~~g~--------gi~~Ll~~i~~~l~~ 357 (693)
+|+||+|+..... .. ...+ ...++ +++++||.+|. ++..|++.|.+.++.
T Consensus 133 vviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~ 202 (394)
T PRK12736 133 VFLNKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPT 202 (394)
T ss_pred EEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCC
Confidence 8999999874321 11 1111 12333 68999999983 688999999888764
No 374
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.64 E-value=2.9e-15 Score=145.42 Aligned_cols=150 Identities=15% Similarity=0.079 Sum_probs=101.6
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCe--eEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (693)
+|+++|.+|+|||||++++.+.+. ...+.++..+.....+.+++. .+.+|||||........
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------------- 65 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLR-------------- 65 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccc--------------
Confidence 699999999999999999998752 233333333333334556654 46799999986532111
Q ss_pred CCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH--HHHHHHHhhcCCCcEEEEecccCCccchh
Q 005504 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKGI 320 (693)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~--~i~~~L~~~~~~~p~ivv~NK~D~~~~~~ 320 (693)
...+..+|++++|+|..+.-+.++. .+...+++...+.|+++|+||+|+.....
T Consensus 66 ------------------------~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~ 121 (174)
T cd04135 66 ------------------------PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPK 121 (174)
T ss_pred ------------------------cccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChh
Confidence 1335678999999999876554433 34555554446799999999999854321
Q ss_pred h---------------hHHH-HHhcCC-CCccccccCCCCHHHHHHHHHhh
Q 005504 321 M---------------QVSE-FWSLGF-SPLPISAISGTGTGELLDLVCSE 354 (693)
Q Consensus 321 ~---------------~~~~-~~~~g~-~~v~iSA~~g~gi~~Ll~~i~~~ 354 (693)
. .... ....+. .++++||++|.|++++++.+...
T Consensus 122 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~ 172 (174)
T cd04135 122 TLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILA 172 (174)
T ss_pred hHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHH
Confidence 0 0111 223454 57899999999999999988764
No 375
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.63 E-value=3.4e-15 Score=158.35 Aligned_cols=161 Identities=20% Similarity=0.210 Sum_probs=111.7
Q ss_pred EEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEe------------------------cCeeEEEEecCCc
Q 005504 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW------------------------GEHEFMLVDTGGV 221 (693)
Q Consensus 166 V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~------------------------~~~~~~lvDTpG~ 221 (693)
|+++|.||||||||||+|++.+ +.++++|++|.++..+...+ .+.++.+|||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~-~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLAD-VEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCC-CcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 5799999999999999999986 68899999999998876654 2257999999999
Q ss_pred ccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCC------------CCHH
Q 005504 222 LNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG------------LTAA 289 (693)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~------------~~~~ 289 (693)
........ -+..++...+++||++++|+|+... ..+.
T Consensus 80 v~ga~~~~-------------------------------glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~ 128 (318)
T cd01899 80 VPGAHEGK-------------------------------GLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPL 128 (318)
T ss_pred CCCccchh-------------------------------hHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHH
Confidence 65221111 1336777889999999999998631 0111
Q ss_pred -HH-----HHH--------------------------------------------HHHHh--------------------
Q 005504 290 -DE-----EIA--------------------------------------------DWLRK-------------------- 299 (693)
Q Consensus 290 -d~-----~i~--------------------------------------------~~L~~-------------------- 299 (693)
|. ++. ..|+.
T Consensus 129 ~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~ 208 (318)
T cd01899 129 EDIEFLENEIDMWIYGILEKNWEKIVRKADAEKTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLAR 208 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHH
Confidence 11 100 11100
Q ss_pred --hcCCCcEEEEecccCCccchhhhHHHHHhc-CCCCccccccCCCCHHHHHH-HHHhhcccc
Q 005504 300 --NYMDKFIILAVNKCESPRKGIMQVSEFWSL-GFSPLPISAISGTGTGELLD-LVCSELKKV 358 (693)
Q Consensus 300 --~~~~~p~ivv~NK~D~~~~~~~~~~~~~~~-g~~~v~iSA~~g~gi~~Ll~-~i~~~l~~~ 358 (693)
....+|+|+|+||+|+.............. ...++++||..+.|+.+|.+ .+.+.+++.
T Consensus 209 ~~llt~KPvI~VlNK~Dl~~~~~~~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~ 271 (318)
T cd01899 209 ALRKRSKPMVIAANKADIPDAENNISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGD 271 (318)
T ss_pred HHHhcCCcEEEEEEHHHccChHHHHHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCC
Confidence 013479999999999764322111001122 23689999999999999998 699999853
No 376
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.63 E-value=1.5e-15 Score=153.71 Aligned_cols=142 Identities=23% Similarity=0.234 Sum_probs=100.6
Q ss_pred eEEEEcCCCCChhhHHHHhhcCcee------------------------------eecCCCCceeeeEEEEEEecCeeEE
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRA------------------------------IVVDEPGVTRDRMYGRSFWGEHEFM 214 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~------------------------------~v~~~~~~T~~~~~~~~~~~~~~~~ 214 (693)
.|+++||+|+|||||+++|+..... ......|+|++.....+.+.+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 3899999999999999999632100 1112358999999999999999999
Q ss_pred EEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCC-------CC
Q 005504 215 LVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG-------LT 287 (693)
Q Consensus 215 lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~-------~~ 287 (693)
+|||||+..+ ...+..++..+|++++|+|+..+ ..
T Consensus 81 liDtpG~~~~--------------------------------------~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~ 122 (219)
T cd01883 81 ILDAPGHRDF--------------------------------------VPNMITGASQADVAVLVVDARKGEFEAGFEKG 122 (219)
T ss_pred EEECCChHHH--------------------------------------HHHHHHHhhhCCEEEEEEECCCCccccccccc
Confidence 9999998531 13344677889999999999983 44
Q ss_pred HHHHHHHHHHHhhcCCCcEEEEecccCCccc----h-hhhH----HH-HHhcC-----CCCccccccCCCCHH
Q 005504 288 AADEEIADWLRKNYMDKFIILAVNKCESPRK----G-IMQV----SE-FWSLG-----FSPLPISAISGTGTG 345 (693)
Q Consensus 288 ~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~----~-~~~~----~~-~~~~g-----~~~v~iSA~~g~gi~ 345 (693)
.+....+.++... ..+|+++|+||+|+... . .... .. +...+ .+++++||.+|.|+.
T Consensus 123 ~~~~~~~~~~~~~-~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 123 GQTREHALLARTL-GVKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred cchHHHHHHHHHc-CCCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 4555555555442 23789999999999731 1 1111 11 22333 358999999999986
No 377
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.63 E-value=5.1e-15 Score=143.52 Aligned_cols=155 Identities=17% Similarity=0.138 Sum_probs=104.0
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (693)
.+|+++|++|||||||++++++... .....+....+.....+.+++ ..+.+|||||......
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------------- 66 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRF-PERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRK--------------- 66 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHH---------------
Confidence 5799999999999999999997652 222233344444444556666 5689999999753110
Q ss_pred cCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH-HHHHHHHhh--cCCCcEEEEecccCCccc
Q 005504 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESPRK 318 (693)
Q Consensus 242 ~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~-~i~~~L~~~--~~~~p~ivv~NK~D~~~~ 318 (693)
.....+++.+|++++|+|..++.+..+. .+.+.+... ..+.|+++|+||+|+...
T Consensus 67 ----------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 124 (170)
T cd04115 67 ----------------------SMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQ 124 (170)
T ss_pred ----------------------hhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhh
Confidence 1223456789999999999876555443 233333332 146899999999998653
Q ss_pred hhh---hHHHH-HhcCCCCccccccC---CCCHHHHHHHHHhhcc
Q 005504 319 GIM---QVSEF-WSLGFSPLPISAIS---GTGTGELLDLVCSELK 356 (693)
Q Consensus 319 ~~~---~~~~~-~~~g~~~v~iSA~~---g~gi~~Ll~~i~~~l~ 356 (693)
... ....+ ...+..++++||++ +.|+.+++..+.+.++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~~ 169 (170)
T cd04115 125 IQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKLK 169 (170)
T ss_pred cCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHHHHhh
Confidence 221 11122 22446789999999 8899999988876553
No 378
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=5.6e-15 Score=140.19 Aligned_cols=158 Identities=20% Similarity=0.217 Sum_probs=120.3
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCe--eEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (693)
.+|+++|..+||||||+++++-.. +.-.-.+.+..|.....+.+.|+ +++||||+|++.+
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd~-fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERF----------------- 84 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFMYDK-FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF----------------- 84 (221)
T ss_pred EEEEEEccCccchHHHHHHHHHhh-hcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHH-----------------
Confidence 689999999999999999999654 33334456677888888888875 5889999999763
Q ss_pred cCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHH--HHHHHHHHHhhcCC-CcEEEEecccCCccc
Q 005504 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA--DEEIADWLRKNYMD-KFIILAVNKCESPRK 318 (693)
Q Consensus 242 ~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~--d~~i~~~L~~~~~~-~p~ivv~NK~D~~~~ 318 (693)
+-.+-.+++++.++++|+|.++..+.+ +.++.+..+.+..+ .-+++|.||.|+.++
T Consensus 85 ---------------------rslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk 143 (221)
T KOG0094|consen 85 ---------------------RSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK 143 (221)
T ss_pred ---------------------hhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccch
Confidence 234558899999999999998865554 34455555554443 457789999999876
Q ss_pred hhhhHHH----HHhcCCCCccccccCCCCHHHHHHHHHhhcccccC
Q 005504 319 GIMQVSE----FWSLGFSPLPISAISGTGTGELLDLVCSELKKVEG 360 (693)
Q Consensus 319 ~~~~~~~----~~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l~~~~~ 360 (693)
.+....+ ...++..++.+||+.|.|+..|+..|...++..+.
T Consensus 144 rqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 144 RQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIAAALPGMEV 189 (221)
T ss_pred hhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHHHhccCccc
Confidence 5433222 34466678999999999999999999999987654
No 379
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.63 E-value=3e-15 Score=147.11 Aligned_cols=152 Identities=23% Similarity=0.274 Sum_probs=101.1
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhcccC
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (693)
.+|+++|.+|||||||++++...... ...| |.......+.+.+..+.+|||||...
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~~~~~--~~~~--T~~~~~~~~~~~~~~~~l~D~~G~~~-------------------- 73 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKLGEVV--TTIP--TIGFNVETVEYKNLKFTMWDVGGQDK-------------------- 73 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc--ccCC--ccccceEEEEECCEEEEEEECCCCHh--------------------
Confidence 57999999999999999999754422 2223 22233345566788999999999853
Q ss_pred CCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCH--HHHHHHHHHHh-hcCCCcEEEEecccCCccchh
Q 005504 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTA--ADEEIADWLRK-NYMDKFIILAVNKCESPRKGI 320 (693)
Q Consensus 244 ~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~--~d~~i~~~L~~-~~~~~p~ivv~NK~D~~~~~~ 320 (693)
+...+..+++.+|++|||+|+++..+. ....+.+.+.. ...+.|+++|+||+|+.....
T Consensus 74 ------------------~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~ 135 (182)
T PTZ00133 74 ------------------LRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMS 135 (182)
T ss_pred ------------------HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCC
Confidence 123445678899999999999764222 22233334332 123689999999999865321
Q ss_pred -hhHHHHHhcC------CCCccccccCCCCHHHHHHHHHhhccc
Q 005504 321 -MQVSEFWSLG------FSPLPISAISGTGTGELLDLVCSELKK 357 (693)
Q Consensus 321 -~~~~~~~~~g------~~~v~iSA~~g~gi~~Ll~~i~~~l~~ 357 (693)
.......... +.++++||.+|.|+++++++|.+.+.+
T Consensus 136 ~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~~ 179 (182)
T PTZ00133 136 TTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANIKK 179 (182)
T ss_pred HHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHHHHH
Confidence 1111111111 124578999999999999999876653
No 380
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.63 E-value=4.4e-15 Score=163.84 Aligned_cols=163 Identities=23% Similarity=0.224 Sum_probs=111.8
Q ss_pred cCCcEEEeecCCCCChhhHHHHHhcCC--CceecCCCCcccceEEEEEeC------------------CC-------CCe
Q 005504 369 NRIPAIAIVGRPNVGKSSILNALVGED--RTIVSPISGTTRDAIDTEFTG------------------PE-------GQK 421 (693)
Q Consensus 369 ~~~~~I~ivG~~n~GKSSLin~llg~~--~~~v~~~~gtT~d~~~~~~~~------------------~~-------g~~ 421 (693)
++..+|+++|+.++|||||+.+|.+.. ...-.-..|.|.+.-...+.+ .. ...
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 445899999999999999999997631 111111235555432111110 00 257
Q ss_pred EEEEeCccccchhhhccCCChhhHhHHHHHHHHHhcCCeEEEEecccccC-CHHHHHHHHHHHHhCC-cEEEEEeccCCC
Q 005504 422 FRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACI-TEQDCRIAERIEQEGK-GCLIVVNKWDTI 499 (693)
Q Consensus 422 i~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~-~~~d~~~~~~l~~~~~-p~Ivv~NK~Dl~ 499 (693)
+.||||||+.++ ...++..+..+|++++|+|+.++. ..+....+..+...+. |+++|+||+|+.
T Consensus 87 i~liDtPG~~~f--------------~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~ 152 (411)
T PRK04000 87 VSFVDAPGHETL--------------MATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLV 152 (411)
T ss_pred EEEEECCCHHHH--------------HHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccc
Confidence 999999998654 234566677899999999999886 6777777777777665 699999999997
Q ss_pred CCcchhhHHHHHHHHHHHHhc--CCCCcEEEeccccCCCHHHHHHHHHHHH
Q 005504 500 PNKNQQTATYYEQDVREKLRA--LDWAPIVYSTAIAGQSVDKIIVAAEMVD 548 (693)
Q Consensus 500 ~~~~~~~~~~~~~~i~~~l~~--~~~~piv~iSA~~g~gv~~L~~~i~~~~ 548 (693)
+... .....+.+...+.. ....+++++||++|.|+++|++.|....
T Consensus 153 ~~~~---~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 153 SKER---ALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred cchh---HHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 5322 11122334444332 2357899999999999999999998753
No 381
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.63 E-value=6.1e-15 Score=144.09 Aligned_cols=153 Identities=14% Similarity=0.086 Sum_probs=105.2
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (693)
.+|+++|.+|||||+|+.+++... .. ..+..+..+.....+..++ ..+.+|||+|...+...
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~-f~-~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~-------------- 65 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNK-FP-TDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRL-------------- 65 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC-CC-CCCCCcceeeeEEEEEECCEEEEEEEEECCCCcccccc--------------
Confidence 369999999999999999999765 22 2232222233333445555 56889999998753321
Q ss_pred cCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH--HHHHHHHhhcCCCcEEEEecccCCccch
Q 005504 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKG 319 (693)
Q Consensus 242 ~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~--~i~~~L~~~~~~~p~ivv~NK~D~~~~~ 319 (693)
...+++.+|++|+|+|..+..+.+.. .+.+.+++...+.|+++|+||+|+..+.
T Consensus 66 ------------------------~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~ 121 (176)
T cd04133 66 ------------------------RPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDK 121 (176)
T ss_pred ------------------------chhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccCh
Confidence 22467899999999999887666553 3445454433578999999999985432
Q ss_pred h----------h---hHHHH-HhcCC-CCccccccCCCCHHHHHHHHHhhcc
Q 005504 320 I----------M---QVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSELK 356 (693)
Q Consensus 320 ~----------~---~~~~~-~~~g~-~~v~iSA~~g~gi~~Ll~~i~~~l~ 356 (693)
. . ....+ ...+. .++++||++|.|++++++.+.+.+.
T Consensus 122 ~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~~ 173 (176)
T cd04133 122 QYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVVL 173 (176)
T ss_pred hhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHHh
Confidence 1 1 11112 23455 4899999999999999999987653
No 382
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.63 E-value=8.2e-15 Score=165.59 Aligned_cols=116 Identities=20% Similarity=0.270 Sum_probs=89.6
Q ss_pred CCcEEEeecCCCCChhhHHHHHhcCCCc--ee-------------cC------CCCcccceEEEEEeCCCCCeEEEEeCc
Q 005504 370 RIPAIAIVGRPNVGKSSILNALVGEDRT--IV-------------SP------ISGTTRDAIDTEFTGPEGQKFRLIDTA 428 (693)
Q Consensus 370 ~~~~I~ivG~~n~GKSSLin~llg~~~~--~v-------------~~------~~gtT~d~~~~~~~~~~g~~i~liDTp 428 (693)
+.++|+|+|++|+|||||+++|+..... .. ++ ..|.|.......+.+ ++..+.+||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~-~~~~inliDTP 87 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPY-RDCLINLLDTP 87 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEE-CCEEEEEEECC
Confidence 4579999999999999999999732111 11 11 114444444455664 67899999999
Q ss_pred cccchhhhccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCC
Q 005504 429 GIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIP 500 (693)
Q Consensus 429 G~~~~~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~ 500 (693)
|+.++. ..+.++++.+|++|+|+|++.+...+...++..+...++|+++++||+|+..
T Consensus 88 G~~df~--------------~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 88 GHEDFS--------------EDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDG 145 (526)
T ss_pred CchhhH--------------HHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccc
Confidence 997652 2356678899999999999999988888899988889999999999999854
No 383
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=3e-15 Score=161.05 Aligned_cols=152 Identities=22% Similarity=0.305 Sum_probs=122.1
Q ss_pred CCCCeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEe-cCeeEEEEecCCcccccCCchhhhhhhhhhh
Q 005504 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW-GEHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (693)
Q Consensus 161 ~~~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~-~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~ 239 (693)
.+.|.|.|+||.+.|||||+++|.+...+ .....|+|.+.-...+.+ .|..+++.||||+.-++
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VA-A~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~-------------- 215 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVA-AGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFS-------------- 215 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCcee-hhhcCCccceeceEEEecCCCCEEEEecCCcHHHHH--------------
Confidence 46789999999999999999999998744 356679999988777765 67899999999996422
Q ss_pred cccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCccch
Q 005504 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKG 319 (693)
Q Consensus 240 ~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~ 319 (693)
.+-.+...-+|++++||-+.+|+.++..+.+.+.+. .+.|+|+++||||.+...
T Consensus 216 ------------------------aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~--A~VpiVvAinKiDkp~a~ 269 (683)
T KOG1145|consen 216 ------------------------AMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKS--ANVPIVVAINKIDKPGAN 269 (683)
T ss_pred ------------------------HHHhccCccccEEEEEEEccCCccHhHHHHHHHHHh--cCCCEEEEEeccCCCCCC
Confidence 222345566899999999999999999999999988 699999999999988654
Q ss_pred hhhH-HHHHh-------cC--CCCccccccCCCCHHHHHHHHHh
Q 005504 320 IMQV-SEFWS-------LG--FSPLPISAISGTGTGELLDLVCS 353 (693)
Q Consensus 320 ~~~~-~~~~~-------~g--~~~v~iSA~~g~gi~~Ll~~i~~ 353 (693)
.... .++.. +| .+++||||.+|.|++.|.+.+.-
T Consensus 270 pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill 313 (683)
T KOG1145|consen 270 PEKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILL 313 (683)
T ss_pred HHHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHH
Confidence 3221 22222 23 36899999999999999998764
No 384
>PRK12735 elongation factor Tu; Reviewed
Probab=99.63 E-value=4.7e-15 Score=163.09 Aligned_cols=154 Identities=19% Similarity=0.168 Sum_probs=114.5
Q ss_pred CeEEEEcCCCCChhhHHHHhhcC------cee---------eecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCc
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGG------NRA---------IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQ 228 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~------~~~---------~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~ 228 (693)
.+|+++||+|+|||||+++|++. ... ......|+|.+.....+.+++..+.++||||+.+
T Consensus 13 ~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~----- 87 (396)
T PRK12735 13 VNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD----- 87 (396)
T ss_pred EEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH-----
Confidence 47999999999999999999862 111 1122468898887777777888999999999853
Q ss_pred hhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEE-
Q 005504 229 PNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFII- 307 (693)
Q Consensus 229 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~i- 307 (693)
+...+..++..+|++++|+|+..+...++.+.+.++.. .+.|.+
T Consensus 88 ---------------------------------f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~--~gi~~ii 132 (396)
T PRK12735 88 ---------------------------------YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ--VGVPYIV 132 (396)
T ss_pred ---------------------------------HHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHH--cCCCeEE
Confidence 12445577889999999999999999988888888876 477865
Q ss_pred EEecccCCccchh-h-----hHHHH-HhcC-----CCCccccccCCC----------CHHHHHHHHHhhccc
Q 005504 308 LAVNKCESPRKGI-M-----QVSEF-WSLG-----FSPLPISAISGT----------GTGELLDLVCSELKK 357 (693)
Q Consensus 308 vv~NK~D~~~~~~-~-----~~~~~-~~~g-----~~~v~iSA~~g~----------gi~~Ll~~i~~~l~~ 357 (693)
+|+||+|+..... . ....+ ...+ .+++++||.+|. |+..|++.|...++.
T Consensus 133 vvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~ 204 (396)
T PRK12735 133 VFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPE 204 (396)
T ss_pred EEEEecCCcchHHHHHHHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCC
Confidence 5799999974221 1 11111 1223 467999999984 788999999887653
No 385
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.63 E-value=1.1e-14 Score=139.39 Aligned_cols=160 Identities=26% Similarity=0.364 Sum_probs=108.9
Q ss_pred EEEEcCCCCChhhHHHHhhc-CceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCC
Q 005504 166 VAIVGRPNVGKSALFNRLVG-GNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (693)
Q Consensus 166 V~ivG~~nvGKSsL~n~l~~-~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (693)
|+++|++|+|||||+|+|.+ ......+..+++|...... .++ ..+.+|||||+....... ...+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~--~~~-~~~~~~D~~g~~~~~~~~-~~~~----------- 66 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFF--NVN-DKFRLVDLPGYGYAKVSK-EVKE----------- 66 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEE--Ecc-CeEEEecCCCccccccCH-HHHH-----------
Confidence 78999999999999999994 3345566777777665442 233 389999999986532211 0000
Q ss_pred CCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCccchhhh--
Q 005504 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ-- 322 (693)
Q Consensus 245 g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~~~~-- 322 (693)
.+...+ ..+.......+++++|+|........+..+.+++.. .+.|+++|+||+|+.......
T Consensus 67 ------------~~~~~~-~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~--~~~~vi~v~nK~D~~~~~~~~~~ 131 (170)
T cd01876 67 ------------KWGKLI-EEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEE--LGIPFLVVLTKADKLKKSELAKA 131 (170)
T ss_pred ------------HHHHHH-HHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHH--cCCCEEEEEEchhcCChHHHHHH
Confidence 011111 222233356789999999998877877888889887 478999999999986432211
Q ss_pred ---HHHHHh---cCCCCccccccCCCCHHHHHHHHHhhc
Q 005504 323 ---VSEFWS---LGFSPLPISAISGTGTGELLDLVCSEL 355 (693)
Q Consensus 323 ---~~~~~~---~g~~~v~iSA~~g~gi~~Ll~~i~~~l 355 (693)
...... ...+++++||.++.|+.++++.|.+.+
T Consensus 132 ~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 132 LKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKWL 170 (170)
T ss_pred HHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHhC
Confidence 111121 223678999999999999999998653
No 386
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=4.1e-15 Score=161.93 Aligned_cols=163 Identities=20% Similarity=0.239 Sum_probs=122.2
Q ss_pred CCcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCC--CCCeEEEEeCccccchhhhccCCChhhHhH
Q 005504 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP--EGQKFRLIDTAGIRKRAAIASSGSTTEALS 447 (693)
Q Consensus 370 ~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~--~g~~i~liDTpG~~~~~~~~~~~~~~e~~~ 447 (693)
+++-|+++|+-..|||||+..+-+.+ .....--|.|...-...+... +...++|+|||||.-|..
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~-Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~------------ 70 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTN-VAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTA------------ 70 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCc-cccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHH------------
Confidence 56889999999999999999998654 334555578877655555543 347899999999965533
Q ss_pred HHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHHHHHHHH-H-h--cCCC
Q 005504 448 VNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREK-L-R--ALDW 523 (693)
Q Consensus 448 ~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~-l-~--~~~~ 523 (693)
.|+.. ..-+|+++||+|+.+|+.+|..+-++.++..+.|+|+++||+|..+..... +..++.+. + . +-+.
T Consensus 71 -mRaRG-a~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~----v~~el~~~gl~~E~~gg~ 144 (509)
T COG0532 71 -MRARG-ASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDK----VKQELQEYGLVPEEWGGD 144 (509)
T ss_pred -HHhcC-CccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHH----HHHHHHHcCCCHhhcCCc
Confidence 33332 367899999999999999999999999999999999999999998543222 12222211 0 0 1123
Q ss_pred CcEEEeccccCCCHHHHHHHHHHHHHHh
Q 005504 524 APIVYSTAIAGQSVDKIIVAAEMVDKER 551 (693)
Q Consensus 524 ~piv~iSA~~g~gv~~L~~~i~~~~~~~ 551 (693)
..++++||++|.|+++|++.+.-..+-+
T Consensus 145 v~~VpvSA~tg~Gi~eLL~~ill~aev~ 172 (509)
T COG0532 145 VIFVPVSAKTGEGIDELLELILLLAEVL 172 (509)
T ss_pred eEEEEeeccCCCCHHHHHHHHHHHHHHH
Confidence 6899999999999999999987654443
No 387
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.63 E-value=4.9e-15 Score=144.54 Aligned_cols=151 Identities=17% Similarity=0.108 Sum_probs=100.5
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (693)
.+|+++|.+|||||||+.++++... +..+..+..+.....+.+++ ..+.+|||||.....
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------------- 63 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD---------------- 63 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhh----------------
Confidence 3699999999999999999997642 23333333333233344555 568899999975421
Q ss_pred cCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH--HHHHHHHhhcCCCcEEEEecccCCccch
Q 005504 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKG 319 (693)
Q Consensus 242 ~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~--~i~~~L~~~~~~~p~ivv~NK~D~~~~~ 319 (693)
.....++..+|++|+|+|..+.-+.... .+...++....+.|+++|+||+|+....
T Consensus 64 ----------------------~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~ 121 (174)
T cd01871 64 ----------------------RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 121 (174)
T ss_pred ----------------------hhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccCh
Confidence 1122456789999999999875444432 2344444433478999999999985421
Q ss_pred h------------h---hHHHH-HhcCC-CCccccccCCCCHHHHHHHHHhh
Q 005504 320 I------------M---QVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSE 354 (693)
Q Consensus 320 ~------------~---~~~~~-~~~g~-~~v~iSA~~g~gi~~Ll~~i~~~ 354 (693)
. . ....+ ..++. .++++||++|.|++++++.+.+.
T Consensus 122 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 122 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred hhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence 1 0 01111 23443 67999999999999999988753
No 388
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.63 E-value=2.6e-15 Score=145.01 Aligned_cols=149 Identities=15% Similarity=0.119 Sum_probs=99.1
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (693)
+|+++|.+|||||||+++|++.+. ... ..++..+.........+ ..+.+|||||+......
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~--------------- 64 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKF-PTE-YVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRL--------------- 64 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CCC-CCCceeeeeEEEEEECCEEEEEEEEeCCCccccccc---------------
Confidence 689999999999999999998763 122 22222233333334443 46999999998753211
Q ss_pred CCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHH--HHHHHHHHhhcCCCcEEEEecccCCccchh
Q 005504 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPRKGI 320 (693)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d--~~i~~~L~~~~~~~p~ivv~NK~D~~~~~~ 320 (693)
....++.+|++++|+|..+..+... ..+...+.....+.|+++|+||+|+.....
T Consensus 65 -----------------------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 121 (171)
T cd00157 65 -----------------------RPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDEN 121 (171)
T ss_pred -----------------------chhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchh
Confidence 1123477999999999986433322 223444444334799999999999865432
Q ss_pred h--------------hHHH-HHhcCC-CCccccccCCCCHHHHHHHHHh
Q 005504 321 M--------------QVSE-FWSLGF-SPLPISAISGTGTGELLDLVCS 353 (693)
Q Consensus 321 ~--------------~~~~-~~~~g~-~~v~iSA~~g~gi~~Ll~~i~~ 353 (693)
. .... ....+. .++++||.+|.|+.++++.|.+
T Consensus 122 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 122 TLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred hhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 1 1111 223455 7899999999999999998865
No 389
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.63 E-value=4e-15 Score=147.09 Aligned_cols=153 Identities=18% Similarity=0.184 Sum_probs=101.8
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (693)
+|+++|.+|||||||++++.+..... ...|.... .....+..++ ..+.+|||||...+...
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~-~~~~t~~~-~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l--------------- 64 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQ-VYEPTVFE-NYVHDIFVDGLHIELSLWDTAGQEEFDRL--------------- 64 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-ccCCccee-eeEEEEEECCEEEEEEEEECCCChhcccc---------------
Confidence 68999999999999999999875321 11222222 2222334444 56899999998653211
Q ss_pred CCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH--HHHHHHHhhcCCCcEEEEecccCCccchh
Q 005504 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKGI 320 (693)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~--~i~~~L~~~~~~~p~ivv~NK~D~~~~~~ 320 (693)
...++..+|++++|+|..+.-+.+.. .++..++....+.|+++|+||+|+.....
T Consensus 65 -----------------------~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~ 121 (189)
T cd04134 65 -----------------------RSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARN 121 (189)
T ss_pred -----------------------ccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChh
Confidence 11346789999999998876544433 24445554445789999999999865321
Q ss_pred hh---------------HHHH-HhcC-CCCccccccCCCCHHHHHHHHHhhccc
Q 005504 321 MQ---------------VSEF-WSLG-FSPLPISAISGTGTGELLDLVCSELKK 357 (693)
Q Consensus 321 ~~---------------~~~~-~~~g-~~~v~iSA~~g~gi~~Ll~~i~~~l~~ 357 (693)
.. ...+ ...+ ..++++||++|.|++++++.|.+.+-.
T Consensus 122 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 122 ERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred hHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHHhc
Confidence 10 1111 1234 468999999999999999999877654
No 390
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=2.4e-15 Score=135.85 Aligned_cols=156 Identities=19% Similarity=0.143 Sum_probs=115.1
Q ss_pred CCcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeC-CCCCeEEEEeCccccchhhhccCCChhhHhHH
Q 005504 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTG-PEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (693)
Q Consensus 370 ~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~-~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (693)
..++|+++|..|||||.|+.++... .+.....+...+|.....+.. .+..++++|||+|+++|.++.
T Consensus 6 flfkivlvgnagvgktclvrrftqg-lfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsit----------- 73 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQG-LFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSIT----------- 73 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhcc-CCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHH-----------
Confidence 3589999999999999999999854 232333333334433333332 133478999999999986643
Q ss_pred HHHHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHHh---CCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005504 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (693)
Q Consensus 449 ~~~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~~---~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~ 524 (693)
..+++.|+.+|+|+|.+...+...+ +|++.+... ++-.|+|+||+|+.+.. ++.+++.+.+....+.
T Consensus 74 ---qsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drr------evp~qigeefs~~qdm 144 (213)
T KOG0095|consen 74 ---QSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRR------EVPQQIGEEFSEAQDM 144 (213)
T ss_pred ---HHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhh------hhhHHHHHHHHHhhhh
Confidence 3477899999999999987776665 588888764 45678999999986532 2445666666666677
Q ss_pred cEEEeccccCCCHHHHHHHHHH
Q 005504 525 PIVYSTAIAGQSVDKIIVAAEM 546 (693)
Q Consensus 525 piv~iSA~~g~gv~~L~~~i~~ 546 (693)
.++++||+...|++.||..+.-
T Consensus 145 yfletsakea~nve~lf~~~a~ 166 (213)
T KOG0095|consen 145 YFLETSAKEADNVEKLFLDLAC 166 (213)
T ss_pred hhhhhcccchhhHHHHHHHHHH
Confidence 8999999999999999988753
No 391
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.63 E-value=5.9e-15 Score=145.07 Aligned_cols=153 Identities=15% Similarity=0.111 Sum_probs=101.4
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (693)
+|+++|..|||||||++++++... .....|.+..+.....+..++ ..+.+|||+|...+.
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f-~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~----------------- 63 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEF-DEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFI----------------- 63 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHH-----------------
Confidence 689999999999999999987752 222233333344444556666 458999999986421
Q ss_pred CCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH-HHHHHHHhhc-CCCcEEEEecccCCccc--
Q 005504 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-MDKFIILAVNKCESPRK-- 318 (693)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~-~i~~~L~~~~-~~~p~ivv~NK~D~~~~-- 318 (693)
.....++..+|++++|+|.++..+..+. .+.+.+++.. ...| ++|+||+|+...
T Consensus 64 ---------------------~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~ 121 (182)
T cd04128 64 ---------------------NMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLP 121 (182)
T ss_pred ---------------------HhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhcccccc
Confidence 1223567889999999999876554432 2333343321 2345 688999998521
Q ss_pred --hh---h-hHHHH-HhcCCCCccccccCCCCHHHHHHHHHhhccc
Q 005504 319 --GI---M-QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (693)
Q Consensus 319 --~~---~-~~~~~-~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l~~ 357 (693)
.. . ....+ ...+..++++||++|.|++++++.+.+.+.+
T Consensus 122 ~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~l~~ 167 (182)
T cd04128 122 PEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVLAKAFD 167 (182)
T ss_pred chhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 11 0 11112 2345678999999999999999999887654
No 392
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.62 E-value=4.1e-15 Score=144.59 Aligned_cols=148 Identities=16% Similarity=0.124 Sum_probs=102.3
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (693)
+|+++|.+|+|||||++++.+.. ....+.+++.+.....+.+++ ..+.+|||||.......
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------------- 64 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNG--YPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKL--------------- 64 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccc---------------
Confidence 68999999999999999998764 234455555555444555665 46789999998643211
Q ss_pred CCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH--HHHHHHHhhcCCCcEEEEecccCCccch-
Q 005504 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKG- 319 (693)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~--~i~~~L~~~~~~~p~ivv~NK~D~~~~~- 319 (693)
...+++.+|++++|+|..+..+.+.. .+...++....+.|+++|+||+|+....
T Consensus 65 -----------------------~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 121 (173)
T cd04130 65 -----------------------RPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVN 121 (173)
T ss_pred -----------------------cccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChh
Confidence 11356789999999999876554432 3444454433468999999999986421
Q ss_pred -----------h---hhHHHH-HhcCC-CCccccccCCCCHHHHHHHHH
Q 005504 320 -----------I---MQVSEF-WSLGF-SPLPISAISGTGTGELLDLVC 352 (693)
Q Consensus 320 -----------~---~~~~~~-~~~g~-~~v~iSA~~g~gi~~Ll~~i~ 352 (693)
. .....+ ...+. .++++||++|.|+++|++.+.
T Consensus 122 ~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 122 VLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred HHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 0 011122 23455 689999999999999998774
No 393
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.62 E-value=5.3e-15 Score=145.93 Aligned_cols=158 Identities=18% Similarity=0.179 Sum_probs=101.8
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCC--CeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
.||+++|.+|+|||||++++...... .....++.+.....+.. ++ ..+.+|||||+.++....
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~--~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~~~------------ 66 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFP--EEYHPTVFENYVTDCRV-DGKPVQLALWDTAGQEEYERLR------------ 66 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCcccceEEEEEEE-CCEEEEEEEEECCCChhccccc------------
Confidence 48999999999999999999843221 22223444444434443 33 357899999986542211
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHH--HHHHHHHHh--CCcEEEEEeccCCCCCcch------hhHHHHHHHHHHHHh
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDC--RIAERIEQE--GKGCLIVVNKWDTIPNKNQ------QTATYYEQDVREKLR 519 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~--~~~~~l~~~--~~p~Ivv~NK~Dl~~~~~~------~~~~~~~~~i~~~l~ 519 (693)
...++.+|++++|+|.++..+.++. .|+..+... ..|+|+|+||+|+...... ..... .+.......
T Consensus 67 --~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~ 143 (187)
T cd04129 67 --PLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVP-IQQGKRVAK 143 (187)
T ss_pred --hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCC-HHHHHHHHH
Confidence 1145789999999999776555544 366666543 6899999999998542100 00000 011112222
Q ss_pred cCCCCcEEEeccccCCCHHHHHHHHHHH
Q 005504 520 ALDWAPIVYSTAIAGQSVDKIIVAAEMV 547 (693)
Q Consensus 520 ~~~~~piv~iSA~~g~gv~~L~~~i~~~ 547 (693)
..+..+++++||++|.|++++|+.+.+.
T Consensus 144 ~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 171 (187)
T cd04129 144 EIGAKKYMECSALTGEGVDDVFEAATRA 171 (187)
T ss_pred HhCCcEEEEccCCCCCCHHHHHHHHHHH
Confidence 2333589999999999999999998754
No 394
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.62 E-value=5.5e-15 Score=149.33 Aligned_cols=151 Identities=17% Similarity=0.210 Sum_probs=101.2
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCC
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (693)
+|+++|.+|||||||++++++.+.. ...+ |.........+....+.+|||||...+.
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~--~~~~--Tig~~~~~~~~~~~~l~iwDt~G~e~~~------------------- 58 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFK--DTVS--TVGGAFYLKQWGPYNISIWDTAGREQFH------------------- 58 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC--CCCC--ccceEEEEEEeeEEEEEEEeCCCcccch-------------------
Confidence 6899999999999999999987632 2223 2222233334566789999999986421
Q ss_pred CCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH--HHHHHHHhhcCCCcEEEEecccCCcc-----
Q 005504 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPR----- 317 (693)
Q Consensus 245 g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~--~i~~~L~~~~~~~p~ivv~NK~D~~~----- 317 (693)
.....+++.+|++|+|+|.++..+.... .+..+.+....+.|+|+|+||+|+..
T Consensus 59 -------------------~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~ 119 (220)
T cd04126 59 -------------------GLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALA 119 (220)
T ss_pred -------------------hhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccc
Confidence 1223457889999999999976554443 22223322224679999999999865
Q ss_pred --------------chhh---hHHHHH-hcC--------------CCCccccccCCCCHHHHHHHHHhhccc
Q 005504 318 --------------KGIM---QVSEFW-SLG--------------FSPLPISAISGTGTGELLDLVCSELKK 357 (693)
Q Consensus 318 --------------~~~~---~~~~~~-~~g--------------~~~v~iSA~~g~gi~~Ll~~i~~~l~~ 357 (693)
.... ....+. +.+ ..++++||++|.|+++++..+.+.+..
T Consensus 120 ~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~ 191 (220)
T cd04126 120 GQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP 191 (220)
T ss_pred cccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 1111 111121 222 468899999999999999999876653
No 395
>PLN03127 Elongation factor Tu; Provisional
Probab=99.62 E-value=1e-14 Score=162.05 Aligned_cols=154 Identities=17% Similarity=0.171 Sum_probs=113.4
Q ss_pred CeEEEEcCCCCChhhHHHHhhcC------ceee---------ecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCc
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGG------NRAI---------VVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQ 228 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~------~~~~---------v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~ 228 (693)
.+|+++||+|+|||||+++|++. .... ....+|+|.+.....+.+++..+.++||||+..
T Consensus 62 ~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~----- 136 (447)
T PLN03127 62 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD----- 136 (447)
T ss_pred EEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc-----
Confidence 57999999999999999999732 1111 123379999998888888889999999999853
Q ss_pred hhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCc-EE
Q 005504 229 PNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF-II 307 (693)
Q Consensus 229 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p-~i 307 (693)
+...+...+..+|++++|+|+..|...++.+++.++.. .+.| +|
T Consensus 137 ---------------------------------f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~--~gip~iI 181 (447)
T PLN03127 137 ---------------------------------YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQ--VGVPSLV 181 (447)
T ss_pred ---------------------------------hHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHH--cCCCeEE
Confidence 11334456678999999999999999999999999987 4788 57
Q ss_pred EEecccCCccchh-hhH-----HHHH-hcC-----CCCcccccc---CCCC-------HHHHHHHHHhhccc
Q 005504 308 LAVNKCESPRKGI-MQV-----SEFW-SLG-----FSPLPISAI---SGTG-------TGELLDLVCSELKK 357 (693)
Q Consensus 308 vv~NK~D~~~~~~-~~~-----~~~~-~~g-----~~~v~iSA~---~g~g-------i~~Ll~~i~~~l~~ 357 (693)
+|+||+|+..... ... .++. ..+ .+++++||. +|.| +..|++.|.+.++.
T Consensus 182 vviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~ 253 (447)
T PLN03127 182 VFLNKVDVVDDEELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPE 253 (447)
T ss_pred EEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCC
Confidence 8999999975221 111 1111 122 346777776 4555 78899999887763
No 396
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.62 E-value=2.8e-15 Score=159.78 Aligned_cols=163 Identities=24% Similarity=0.311 Sum_probs=120.4
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCccchhhhH-HHH-Hhc-CCCCcccccc
Q 005504 263 ERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQV-SEF-WSL-GFSPLPISAI 339 (693)
Q Consensus 263 ~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~~~~~-~~~-~~~-g~~~v~iSA~ 339 (693)
.++....+..+|+|+-|+|++.+.......+.+++.. +|.++|+||+|+........ ..+ ... +..++.+|+.
T Consensus 25 ~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~~----k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~~~~~~v~~~ 100 (322)
T COG1161 25 KRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVKE----KPKLLVLNKADLAPKEVTKKWKKYFKKEEGIKPIFVSAK 100 (322)
T ss_pred HHHHHHhcccCCEEEEEEeccccccccCccHHHHHcc----CCcEEEEehhhcCCHHHHHHHHHHHHhcCCCccEEEEee
Confidence 4677788899999999999999998888888888754 56699999999987554322 222 222 5578999999
Q ss_pred CCCCHHHHHHHHHhhcccccCccchhhhccCCcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCC
Q 005504 340 SGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG 419 (693)
Q Consensus 340 ~g~gi~~Ll~~i~~~l~~~~~~~~~~~~~~~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g 419 (693)
++.|...+..++.....................+++++|.||||||||+|+|+|.....+++.||+|..........
T Consensus 101 ~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~--- 177 (322)
T COG1161 101 SRQGGKKIRKALEKLSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDD--- 177 (322)
T ss_pred cccCccchHHHHHHHHHHHHHHHhhcCCCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCC---
Confidence 99988888754443321100000000011234689999999999999999999999999999999999988776542
Q ss_pred CeEEEEeCccccch
Q 005504 420 QKFRLIDTAGIRKR 433 (693)
Q Consensus 420 ~~i~liDTpG~~~~ 433 (693)
.+.|+||||+.-.
T Consensus 178 -~i~LlDtPGii~~ 190 (322)
T COG1161 178 -GIYLLDTPGIIPP 190 (322)
T ss_pred -CeEEecCCCcCCC
Confidence 4899999998653
No 397
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=6.6e-15 Score=158.42 Aligned_cols=162 Identities=22% Similarity=0.305 Sum_probs=124.8
Q ss_pred ccCCcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhH
Q 005504 368 ENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALS 447 (693)
Q Consensus 368 ~~~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~ 447 (693)
+.+++-|-|.|+...|||||+.+|-+... .....-|.|...-...+.+++|..++|+||||+.-|..
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~V-AA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~a------------ 216 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSV-AAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSA------------ 216 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCce-ehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHH------------
Confidence 45678999999999999999999987642 24556688887666666777899999999999955433
Q ss_pred HHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHHHHHHH---HHhcC-CC
Q 005504 448 VNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVRE---KLRAL-DW 523 (693)
Q Consensus 448 ~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~---~l~~~-~~ 523 (693)
+|+. ...-+|++++|+-+.+|..+|..+.+..+.+.+.|+|+++||+|........ ...++.. .+..+ +.
T Consensus 217 -MRaR-GA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~pek----v~~eL~~~gi~~E~~GGd 290 (683)
T KOG1145|consen 217 -MRAR-GANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANPEK----VKRELLSQGIVVEDLGGD 290 (683)
T ss_pred -HHhc-cCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCCHHH----HHHHHHHcCccHHHcCCc
Confidence 2222 2357899999999999999999999999999999999999999986543222 2222211 11222 35
Q ss_pred CcEEEeccccCCCHHHHHHHHHHHH
Q 005504 524 APIVYSTAIAGQSVDKIIVAAEMVD 548 (693)
Q Consensus 524 ~piv~iSA~~g~gv~~L~~~i~~~~ 548 (693)
.+++++||++|.|++.|-+++.-..
T Consensus 291 VQvipiSAl~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 291 VQVIPISALTGENLDLLEEAILLLA 315 (683)
T ss_pred eeEEEeecccCCChHHHHHHHHHHH
Confidence 8999999999999999999987553
No 398
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.62 E-value=6.1e-15 Score=139.64 Aligned_cols=147 Identities=22% Similarity=0.235 Sum_probs=98.2
Q ss_pred EEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCCC
Q 005504 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEG 245 (693)
Q Consensus 166 V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~g 245 (693)
|+++|++|||||||+|+|.+... .....|++..+ ...+..++..+.+|||||...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~--~~~~~~~~~~~~~~D~~g~~~---------------------- 56 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQF-SEDTIPTVGFN--MRKVTKGNVTLKVWDLGGQPR---------------------- 56 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCC-CcCccCCCCcc--eEEEEECCEEEEEEECCCCHh----------------------
Confidence 78999999999999999998752 23333433322 234556778899999999753
Q ss_pred CchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHH--HHHHHHHHh-hcCCCcEEEEecccCCccchhh-
Q 005504 246 IPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRK-NYMDKFIILAVNKCESPRKGIM- 321 (693)
Q Consensus 246 ~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d--~~i~~~L~~-~~~~~p~ivv~NK~D~~~~~~~- 321 (693)
+......++..+|++++|+|+........ ..+.+++.. ...++|+++|+||+|+......
T Consensus 57 ----------------~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~ 120 (159)
T cd04159 57 ----------------FRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVD 120 (159)
T ss_pred ----------------HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHH
Confidence 12334466788999999999886322211 122222221 1146899999999998654321
Q ss_pred hHHHHHh------cCCCCccccccCCCCHHHHHHHHHh
Q 005504 322 QVSEFWS------LGFSPLPISAISGTGTGELLDLVCS 353 (693)
Q Consensus 322 ~~~~~~~------~g~~~v~iSA~~g~gi~~Ll~~i~~ 353 (693)
....... ...+++++||.+|.|++++++.|.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 121 ELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 1122221 1235799999999999999998865
No 399
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.62 E-value=6.4e-15 Score=149.40 Aligned_cols=151 Identities=20% Similarity=0.203 Sum_probs=100.0
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCC-ceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPG-VTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~-~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (693)
+|+++|.+|||||||++++++.... ...++. ...+.....+.+++ ..+.+|||||... .
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~--------------- 63 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYD-DHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--W--------------- 63 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcC-ccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--H---------------
Confidence 6999999999999999999865422 122221 11133333444544 6689999999861 0
Q ss_pred cCCCCchhhHHHHHhcchHHHHHHHHHHHH-hcCeEEEEEeCCCCCCHHH-HHHHHHHHhh--cCCCcEEEEecccCCcc
Q 005504 242 GMEGIPLATREAAVARMPSMIERQATAAIE-ESCVIIFLVDGQAGLTAAD-EEIADWLRKN--YMDKFIILAVNKCESPR 317 (693)
Q Consensus 242 ~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~-~adiil~VvD~~~~~~~~d-~~i~~~L~~~--~~~~p~ivv~NK~D~~~ 317 (693)
+.. ..+. .+|++++|+|+.+.-+... ..+...++.. ..+.|+|+|+||+|+..
T Consensus 64 --------------------~~~---~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~ 120 (221)
T cd04148 64 --------------------TED---SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLAR 120 (221)
T ss_pred --------------------HHh---HHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccc
Confidence 001 2234 8999999999987644332 2344444442 14689999999999865
Q ss_pred chhhhH---HHH-HhcCCCCccccccCCCCHHHHHHHHHhhcc
Q 005504 318 KGIMQV---SEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (693)
Q Consensus 318 ~~~~~~---~~~-~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l~ 356 (693)
...... ..+ ...+..++++||.+|.|++++++.|...+.
T Consensus 121 ~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 121 SREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred cceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 322111 111 234567899999999999999999998775
No 400
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.61 E-value=6.9e-15 Score=142.61 Aligned_cols=149 Identities=19% Similarity=0.290 Sum_probs=99.2
Q ss_pred CCeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005504 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (693)
Q Consensus 163 ~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (693)
..+|+++|++|+|||||+++|.+.......+..|. ....+.+.+..+.+|||||....
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~----~~~~i~~~~~~~~~~D~~G~~~~------------------ 71 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISHITPTQGF----NIKTVQSDGFKLNVWDIGGQRAI------------------ 71 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCc----ceEEEEECCEEEEEEECCCCHHH------------------
Confidence 46899999999999999999998753333333332 23345677889999999997431
Q ss_pred CCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHH--HHHHHHHHHh-hcCCCcEEEEecccCCccch
Q 005504 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA--DEEIADWLRK-NYMDKFIILAVNKCESPRKG 319 (693)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~--d~~i~~~L~~-~~~~~p~ivv~NK~D~~~~~ 319 (693)
...+...++.+|++++|+|+....... ...+...+.. ...+.|+++++||+|+....
T Consensus 72 --------------------~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 131 (173)
T cd04155 72 --------------------RPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA 131 (173)
T ss_pred --------------------HHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC
Confidence 123345678899999999988532221 1222222221 11468999999999986532
Q ss_pred h-hhHHHHHhcC------CCCccccccCCCCHHHHHHHHHh
Q 005504 320 I-MQVSEFWSLG------FSPLPISAISGTGTGELLDLVCS 353 (693)
Q Consensus 320 ~-~~~~~~~~~g------~~~v~iSA~~g~gi~~Ll~~i~~ 353 (693)
. ....+..+.. +.++++||++|.|+++++++|.+
T Consensus 132 ~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 132 PAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred CHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 1 1122222211 13679999999999999999864
No 401
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.61 E-value=9.3e-15 Score=142.85 Aligned_cols=155 Identities=22% Similarity=0.137 Sum_probs=103.4
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (693)
.+|+++|.+|||||||++++++... +....+++.........+.+ ..+.+|||||.....
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------------- 63 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHF--VESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYS---------------- 63 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--ccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhH----------------
Confidence 3799999999999999999997752 23333444333344445554 457899999985411
Q ss_pred cCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH-HHHH-HHHhh-cCCCcEEEEecccCCccc
Q 005504 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIAD-WLRKN-YMDKFIILAVNKCESPRK 318 (693)
Q Consensus 242 ~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~-~i~~-~L~~~-~~~~p~ivv~NK~D~~~~ 318 (693)
......+..++.+++|+|..+..+.+.. .+.+ .++.. ..+.|+++|+||+|+...
T Consensus 64 ----------------------~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 121 (180)
T cd04137 64 ----------------------ILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQ 121 (180)
T ss_pred ----------------------HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhc
Confidence 2223566789999999999875433222 2222 22221 146799999999998643
Q ss_pred hhhh---HHH-HHhcCCCCccccccCCCCHHHHHHHHHhhcccc
Q 005504 319 GIMQ---VSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (693)
Q Consensus 319 ~~~~---~~~-~~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l~~~ 358 (693)
.... ... ....+..++++||.+|.|+.+++..+.+.+...
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 165 (180)
T cd04137 122 RQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIEEIEKV 165 (180)
T ss_pred CccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 2111 111 223456789999999999999999999877643
No 402
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.61 E-value=1.3e-14 Score=140.41 Aligned_cols=153 Identities=16% Similarity=0.091 Sum_probs=100.5
Q ss_pred CCeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCe--eEEEEecCCcccccCCchhhhhhhhhhhc
Q 005504 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (693)
Q Consensus 163 ~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~lvDTpG~~~~~~~~~~~~~~~~~~~~ 240 (693)
..+|+++|.+|||||||++++++.. ......+..+.+.....+.+++. .+.+|||||....
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~---------------- 67 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNK-FDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERF---------------- 67 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCC-CCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHH----------------
Confidence 3589999999999999999999765 22223344344443444555554 5788999997531
Q ss_pred ccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH-HHHHHHHhh-----cCCCcEEEEecccC
Q 005504 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-----YMDKFIILAVNKCE 314 (693)
Q Consensus 241 ~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~-~i~~~L~~~-----~~~~p~ivv~NK~D 314 (693)
......+++.+|++++|+|..+..+.... .+...+... ..+.|+++|+||+|
T Consensus 68 ----------------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 125 (170)
T cd04116 68 ----------------------RSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKND 125 (170)
T ss_pred ----------------------HHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcc
Confidence 12333567889999999998865433222 122212111 13579999999999
Q ss_pred Cccchh--hhHHHH-HhcCC-CCccccccCCCCHHHHHHHHHhh
Q 005504 315 SPRKGI--MQVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSE 354 (693)
Q Consensus 315 ~~~~~~--~~~~~~-~~~g~-~~v~iSA~~g~gi~~Ll~~i~~~ 354 (693)
+..... ....++ ..++. .++++||++|.|+.++++.+.+.
T Consensus 126 l~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 126 IPERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred ccccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence 864211 122222 23454 68999999999999999998754
No 403
>PRK00098 GTPase RsgA; Reviewed
Probab=99.61 E-value=3.2e-15 Score=158.07 Aligned_cols=142 Identities=23% Similarity=0.263 Sum_probs=101.3
Q ss_pred HHHhcCeEEEEEeCCCCCCHHH--HHHHHHHHhhcCCCcEEEEecccCCccchh--hhHHHH-HhcCCCCccccccCCCC
Q 005504 269 AIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPRKGI--MQVSEF-WSLGFSPLPISAISGTG 343 (693)
Q Consensus 269 ~i~~adiil~VvD~~~~~~~~d--~~i~~~L~~~~~~~p~ivv~NK~D~~~~~~--~~~~~~-~~~g~~~v~iSA~~g~g 343 (693)
.+.++|++++|+|+.++..... ..++..+.. .++|+++|+||+|+..... ...... ...|++++++||.+|.|
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~g 154 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEG 154 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCcc
Confidence 4689999999999976533222 122233343 5789999999999963221 112223 35678899999999999
Q ss_pred HHHHHHHHHhhcccccCccchhhhccCCcEEEeecCCCCChhhHHHHHhcCCCceecCCCC-------cccceEEEEEeC
Q 005504 344 TGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISG-------TTRDAIDTEFTG 416 (693)
Q Consensus 344 i~~Ll~~i~~~l~~~~~~~~~~~~~~~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~g-------tT~d~~~~~~~~ 416 (693)
+++|++.+. . ..++++|.+|||||||+|+|+|.....++.+++ ||+......+.
T Consensus 155 i~~L~~~l~-------g-----------k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~- 215 (298)
T PRK00098 155 LDELKPLLA-------G-----------KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLP- 215 (298)
T ss_pred HHHHHhhcc-------C-----------ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcC-
Confidence 999887762 1 368999999999999999999987666665553 77765554443
Q ss_pred CCCCeEEEEeCccccchh
Q 005504 417 PEGQKFRLIDTAGIRKRA 434 (693)
Q Consensus 417 ~~g~~i~liDTpG~~~~~ 434 (693)
.+ ..++||||++.++
T Consensus 216 -~~--~~~~DtpG~~~~~ 230 (298)
T PRK00098 216 -GG--GLLIDTPGFSSFG 230 (298)
T ss_pred -CC--cEEEECCCcCccC
Confidence 22 3889999998653
No 404
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.61 E-value=3.1e-15 Score=135.07 Aligned_cols=159 Identities=21% Similarity=0.178 Sum_probs=115.4
Q ss_pred CcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCC--CeEEEEeCccccchhhhccCCChhhHhHH
Q 005504 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (693)
Q Consensus 371 ~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g--~~i~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (693)
.++.+|+|.||||||+|+-++.... +.-+.+..+..|.....+.. +| .++.+|||+|+++|..+.
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddt-Fs~sYitTiGvDfkirTv~i-~G~~VkLqIwDtAGqErFrtit----------- 74 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDT-FSGSYITTIGVDFKIRTVDI-NGDRVKLQIWDTAGQERFRTIT----------- 74 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhcc-cccceEEEeeeeEEEEEeec-CCcEEEEEEeecccHHHHHHHH-----------
Confidence 3577899999999999999987542 32333333344444444443 34 378999999998886543
Q ss_pred HHHHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHHh--CCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCc
Q 005504 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE--GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (693)
Q Consensus 449 ~~~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~~--~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~p 525 (693)
-.+++..+++++|+|.+++.+..+. +|++.++.. ..|-|+|+||.|..+.+-... ++.+ .+....++.
T Consensus 75 ---styyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t-----~dAr-~~A~~mgie 145 (198)
T KOG0079|consen 75 ---STYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDT-----EDAR-AFALQMGIE 145 (198)
T ss_pred ---HHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeeh-----HHHH-HHHHhcCch
Confidence 3367999999999999999877764 588888765 578999999999876433221 1222 233334688
Q ss_pred EEEeccccCCCHHHHHHHHHHHHHHh
Q 005504 526 IVYSTAIAGQSVDKIIVAAEMVDKER 551 (693)
Q Consensus 526 iv~iSA~~g~gv~~L~~~i~~~~~~~ 551 (693)
++++|||...|++.+|..|.+...+.
T Consensus 146 ~FETSaKe~~NvE~mF~cit~qvl~~ 171 (198)
T KOG0079|consen 146 LFETSAKENENVEAMFHCITKQVLQA 171 (198)
T ss_pred heehhhhhcccchHHHHHHHHHHHHH
Confidence 99999999999999999998775443
No 405
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.61 E-value=1.1e-14 Score=144.15 Aligned_cols=154 Identities=16% Similarity=0.083 Sum_probs=103.1
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (693)
.+|+++|..|||||||+.++..... . ..+..+.-+.....+.+++ ..+.+|||+|.+.+.
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f-~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~---------------- 65 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAF-P-KEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYD---------------- 65 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-C-cCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhh----------------
Confidence 4799999999999999999997642 1 2222222222222334555 458899999986522
Q ss_pred cCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHH--HHHHHHhhcCCCcEEEEecccCCccch
Q 005504 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE--IADWLRKNYMDKFIILAVNKCESPRKG 319 (693)
Q Consensus 242 ~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~--i~~~L~~~~~~~p~ivv~NK~D~~~~~ 319 (693)
.....+++.+|++|+|+|..+..+.+... +...++....+.|+++|+||+|+.+..
T Consensus 66 ----------------------~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~ 123 (191)
T cd01875 66 ----------------------RLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDA 123 (191)
T ss_pred ----------------------hhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcCh
Confidence 22234678899999999998765544432 333344333578999999999986431
Q ss_pred h---------------hhHHHH-HhcC-CCCccccccCCCCHHHHHHHHHhhccc
Q 005504 320 I---------------MQVSEF-WSLG-FSPLPISAISGTGTGELLDLVCSELKK 357 (693)
Q Consensus 320 ~---------------~~~~~~-~~~g-~~~v~iSA~~g~gi~~Ll~~i~~~l~~ 357 (693)
. .....+ ...+ ..++++||++|.|++++++.+.+.+-.
T Consensus 124 ~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 124 DTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred hhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence 1 011112 2345 368999999999999999999876643
No 406
>PLN03108 Rab family protein; Provisional
Probab=99.61 E-value=1.2e-14 Score=146.26 Aligned_cols=154 Identities=16% Similarity=0.128 Sum_probs=104.4
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (693)
.+|+|+|.+|||||||+|+|++.+.. ....+.+..+.....+.+++ ..+.+|||||....
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~-~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~----------------- 68 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF----------------- 68 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHH-----------------
Confidence 58999999999999999999987532 22334444444444556666 35789999997531
Q ss_pred cCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH-HHHHHHHh-hcCCCcEEEEecccCCccch
Q 005504 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRK-NYMDKFIILAVNKCESPRKG 319 (693)
Q Consensus 242 ~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~-~i~~~L~~-~~~~~p~ivv~NK~D~~~~~ 319 (693)
..+....+..+|++++|+|....-+.... .+...+.. ...+.|+++|+||+|+....
T Consensus 69 ---------------------~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~ 127 (210)
T PLN03108 69 ---------------------RSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRR 127 (210)
T ss_pred ---------------------HHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcccc
Confidence 12344667789999999999865433322 22222222 22468999999999986532
Q ss_pred hh---hHHHH-HhcCCCCccccccCCCCHHHHHHHHHhhcc
Q 005504 320 IM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (693)
Q Consensus 320 ~~---~~~~~-~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l~ 356 (693)
.. ....+ ...++.++++||.+|.|++++++.+.+.+-
T Consensus 128 ~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~~~~~ 168 (210)
T PLN03108 128 AVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIY 168 (210)
T ss_pred CCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 11 11122 235678899999999999999988876653
No 407
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.61 E-value=9.2e-15 Score=146.74 Aligned_cols=184 Identities=18% Similarity=0.164 Sum_probs=127.6
Q ss_pred cCCcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHH
Q 005504 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (693)
Q Consensus 369 ~~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (693)
..+.+|.+.|++|||||||+|+|++.+...++..+-+|..... .+...++..++||||||+++... -+....
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~-~~~~~~~~~l~lwDtPG~gdg~~-------~D~~~r 108 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTR-LRLSYDGENLVLWDTPGLGDGKD-------KDAEHR 108 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhh-HHhhccccceEEecCCCcccchh-------hhHHHH
Confidence 3457889999999999999999998776777766544433322 22224678999999999987322 233344
Q ss_pred HHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHh--CCcEEEEEeccCCCCCc---------c-hhhHHHHHH---H
Q 005504 449 NRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQE--GKGCLIVVNKWDTIPNK---------N-QQTATYYEQ---D 513 (693)
Q Consensus 449 ~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~--~~p~Ivv~NK~Dl~~~~---------~-~~~~~~~~~---~ 513 (693)
......+.+.|++++++|+.++.-.-|.++++.+.-. ++++++++|.+|...+. . ....+.+.. .
T Consensus 109 ~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~ 188 (296)
T COG3596 109 QLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEA 188 (296)
T ss_pred HHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHH
Confidence 5566778999999999999888766666666665543 48999999999976541 0 111111222 2
Q ss_pred HHHHHhcCCCCcEEEeccccCCCHHHHHHHHHHHHHHhhccCCchhHHH
Q 005504 514 VREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVDKERSRRLSTATINQ 562 (693)
Q Consensus 514 i~~~l~~~~~~piv~iSA~~g~gv~~L~~~i~~~~~~~~~~i~t~~ln~ 562 (693)
+.+.+.. -.|++++|+..++|++.|..++.++.....+.+....+.+
T Consensus 189 ~~~~~q~--V~pV~~~~~r~~wgl~~l~~ali~~lp~e~rs~~a~~~~d 235 (296)
T COG3596 189 LGRLFQE--VKPVVAVSGRLPWGLKELVRALITALPVEARSPLAARLQD 235 (296)
T ss_pred HHHHHhh--cCCeEEeccccCccHHHHHHHHHHhCcccccchhhhhhhh
Confidence 3334443 3599999999999999999999998765555444444433
No 408
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.61 E-value=7.1e-15 Score=142.29 Aligned_cols=147 Identities=24% Similarity=0.214 Sum_probs=98.4
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCC
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (693)
+|+++|.+|||||||++++.+.......++.|.+ ...+.+++..+.+|||||...
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~----~~~~~~~~~~~~i~D~~G~~~--------------------- 55 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFT----PTKLRLDKYEVCIFDLGGGAN--------------------- 55 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccce----EEEEEECCEEEEEEECCCcHH---------------------
Confidence 4889999999999999999986322222333332 335567888999999999743
Q ss_pred CCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHH-HHHHHHHHhh--cCCCcEEEEecccCCccch-h
Q 005504 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN--YMDKFIILAVNKCESPRKG-I 320 (693)
Q Consensus 245 g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d-~~i~~~L~~~--~~~~p~ivv~NK~D~~~~~-~ 320 (693)
+......+++.||+++||+|+++..+... ...+..+.+. ..++|+++|+||+|+.... .
T Consensus 56 -----------------~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~ 118 (167)
T cd04161 56 -----------------FRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLG 118 (167)
T ss_pred -----------------HHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCH
Confidence 12344577899999999999987543322 1222222221 1478999999999987643 1
Q ss_pred hhHHHH---Hh----cC--CCCccccccCC------CCHHHHHHHHHh
Q 005504 321 MQVSEF---WS----LG--FSPLPISAISG------TGTGELLDLVCS 353 (693)
Q Consensus 321 ~~~~~~---~~----~g--~~~v~iSA~~g------~gi~~Ll~~i~~ 353 (693)
....+. .. .+ ..++++||.+| .|+.+.+++|.+
T Consensus 119 ~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 119 ADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred HHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence 111111 11 12 24678999998 899999999864
No 409
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.61 E-value=1.1e-14 Score=142.71 Aligned_cols=150 Identities=15% Similarity=0.092 Sum_probs=101.8
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (693)
.+|+++|.+|||||||++++.+.. .. ..+.++..+.....+.+++ ..+.+|||+|...+..
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~-f~-~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~--------------- 64 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDC-YP-ETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDN--------------- 64 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc-CC-CCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhh---------------
Confidence 369999999999999999999875 22 2333222222223445555 4588999999864221
Q ss_pred cCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH--HHHHHHHhhcCCCcEEEEecccCCccc-
Q 005504 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRK- 318 (693)
Q Consensus 242 ~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~--~i~~~L~~~~~~~p~ivv~NK~D~~~~- 318 (693)
....+++.+|++|+|+|..+..+.... .+...+++...+.|+++|+||+|+...
T Consensus 65 -----------------------~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~ 121 (178)
T cd04131 65 -----------------------VRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDL 121 (178)
T ss_pred -----------------------cchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcCh
Confidence 112457889999999999877665542 345555554457899999999998531
Q ss_pred -----------hhh---hHHHH-HhcCC-CCccccccCCCC-HHHHHHHHHh
Q 005504 319 -----------GIM---QVSEF-WSLGF-SPLPISAISGTG-TGELLDLVCS 353 (693)
Q Consensus 319 -----------~~~---~~~~~-~~~g~-~~v~iSA~~g~g-i~~Ll~~i~~ 353 (693)
... ...++ ...+. .++++||++|.| +.+++..+..
T Consensus 122 ~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~ 173 (178)
T cd04131 122 STLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATM 173 (178)
T ss_pred hHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHH
Confidence 001 11122 23565 589999999995 9999998876
No 410
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.60 E-value=1.5e-14 Score=146.69 Aligned_cols=149 Identities=19% Similarity=0.238 Sum_probs=102.3
Q ss_pred eEEEEcCCCCChhhHHHHhhcCce------eee--c-----CCCCcee------------------------eeEEEEEE
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNR------AIV--V-----DEPGVTR------------------------DRMYGRSF 207 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~------~~v--~-----~~~~~T~------------------------~~~~~~~~ 207 (693)
+|+++|+.++|||||+++|..... +.. . ...|.|. +.-...+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 488999999999999999985311 000 0 0011111 11012334
Q ss_pred ecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHH--hcCeEEEEEeCCCC
Q 005504 208 WGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIE--ESCVIIFLVDGQAG 285 (693)
Q Consensus 208 ~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~--~adiil~VvD~~~~ 285 (693)
..++.+.++||||+..+ .+.+..++. .+|++++|+|+..+
T Consensus 81 ~~~~~i~liDtpG~~~~--------------------------------------~~~~~~~~~~~~~D~~llVvda~~g 122 (224)
T cd04165 81 KSSKLVTFIDLAGHERY--------------------------------------LKTTLFGLTGYAPDYAMLVVAANAG 122 (224)
T ss_pred eCCcEEEEEECCCcHHH--------------------------------------HHHHHHhhcccCCCEEEEEEECCCC
Confidence 56788999999998541 123344443 68999999999999
Q ss_pred CCHHHHHHHHHHHhhcCCCcEEEEecccCCccchhh-h----HHHHHh-------------------------c--CCCC
Q 005504 286 LTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM-Q----VSEFWS-------------------------L--GFSP 333 (693)
Q Consensus 286 ~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~~~-~----~~~~~~-------------------------~--g~~~ 333 (693)
...++..++.++.. .+.|+++|+||+|+...... . ...+.. . ..++
T Consensus 123 ~~~~d~~~l~~l~~--~~ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi 200 (224)
T cd04165 123 IIGMTKEHLGLALA--LNIPVFVVVTKIDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPI 200 (224)
T ss_pred CcHHHHHHHHHHHH--cCCCEEEEEECccccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcE
Confidence 99999999999987 58899999999998654211 1 111211 0 1267
Q ss_pred ccccccCCCCHHHHHHHHHh
Q 005504 334 LPISAISGTGTGELLDLVCS 353 (693)
Q Consensus 334 v~iSA~~g~gi~~Ll~~i~~ 353 (693)
+++||.+|.|+++|+..|..
T Consensus 201 ~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 201 FQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred EEeeCCCccCHHHHHHHHHh
Confidence 88999999999999987753
No 411
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.60 E-value=1e-14 Score=141.70 Aligned_cols=151 Identities=15% Similarity=0.113 Sum_probs=98.8
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCe--eEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (693)
.+|+++|.+|||||||++++.+... ...+.++..+.....+.+++. .+.+|||||.......
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-------------- 65 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF--PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRL-------------- 65 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhc--------------
Confidence 4799999999999999999998652 222333333333344556554 5789999998642211
Q ss_pred cCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH--HHHHHHHhhcCCCcEEEEecccCCccch
Q 005504 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKG 319 (693)
Q Consensus 242 ~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~--~i~~~L~~~~~~~p~ivv~NK~D~~~~~ 319 (693)
....+..+|++++|+|..+..+..+. .+...+++...+.|+++|+||+|+....
T Consensus 66 ------------------------~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 121 (175)
T cd01870 66 ------------------------RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 121 (175)
T ss_pred ------------------------cccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccCh
Confidence 11345789999999998864333222 2333344433478999999999986431
Q ss_pred hh---------------hHHHH-HhcCC-CCccccccCCCCHHHHHHHHHhh
Q 005504 320 IM---------------QVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSE 354 (693)
Q Consensus 320 ~~---------------~~~~~-~~~g~-~~v~iSA~~g~gi~~Ll~~i~~~ 354 (693)
.. ....+ ...+. .++++||++|.|++++++.|.+.
T Consensus 122 ~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 122 HTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred hhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHH
Confidence 10 00111 12333 68999999999999999998754
No 412
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.60 E-value=7.3e-15 Score=147.91 Aligned_cols=156 Identities=21% Similarity=0.261 Sum_probs=104.1
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEec-C--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG-E--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~-~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~ 240 (693)
.+|+++|.+|||||||++++++.+.... ..++++.+.....+.+. + ..+.+|||||....
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~-~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~---------------- 65 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEV-SDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERF---------------- 65 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC-CCceeceEEEEEEEEECCCCEEEEEEEeCCcchhH----------------
Confidence 4799999999999999999998763222 23444445444444442 3 46889999997531
Q ss_pred ccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH-HHHHHHHhh--cCCCcEEEEecccCCcc
Q 005504 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESPR 317 (693)
Q Consensus 241 ~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~-~i~~~L~~~--~~~~p~ivv~NK~D~~~ 317 (693)
......++..+|++++|+|.++.-+..+. .+.+.+.+. ....|+++|+||+|+..
T Consensus 66 ----------------------~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~ 123 (211)
T cd04111 66 ----------------------RSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLES 123 (211)
T ss_pred ----------------------HHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccc
Confidence 12334567889999999999875433221 122222221 12457899999999865
Q ss_pred chhh---hHHHH-HhcCCCCccccccCCCCHHHHHHHHHhhcccc
Q 005504 318 KGIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (693)
Q Consensus 318 ~~~~---~~~~~-~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l~~~ 358 (693)
.... ....+ ..++..++++||.+|.|++++++.|.+.+.+.
T Consensus 124 ~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 124 QRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYER 168 (211)
T ss_pred ccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 3211 11122 23566799999999999999999999876543
No 413
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.60 E-value=1.6e-14 Score=139.68 Aligned_cols=152 Identities=14% Similarity=0.136 Sum_probs=101.0
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (693)
.+|+++|.+|||||||++++.+.. ....+..++.+.....+.+++ ..+.+|||||...+.
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------------- 63 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNV--FIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFT---------------- 63 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccch----------------
Confidence 369999999999999999999765 223333344333333445554 467899999986522
Q ss_pred cCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH-HHHHHHHh--hcCCCcEEEEecccCCccc
Q 005504 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRK--NYMDKFIILAVNKCESPRK 318 (693)
Q Consensus 242 ~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~-~i~~~L~~--~~~~~p~ivv~NK~D~~~~ 318 (693)
......+..++.+++|+|..++.+.+.. .+...+.+ ...+.|+++|+||+|+...
T Consensus 64 ----------------------~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~ 121 (168)
T cd04177 64 ----------------------AMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDD 121 (168)
T ss_pred ----------------------hhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcccc
Confidence 1223456789999999998865433322 22232322 1247899999999998653
Q ss_pred hhhh---HHH-HHhcC-CCCccccccCCCCHHHHHHHHHhhc
Q 005504 319 GIMQ---VSE-FWSLG-FSPLPISAISGTGTGELLDLVCSEL 355 (693)
Q Consensus 319 ~~~~---~~~-~~~~g-~~~v~iSA~~g~gi~~Ll~~i~~~l 355 (693)
.... ... ....+ .+++++||++|.|++++++.+.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 122 RQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred CccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 2111 111 12344 4689999999999999999998654
No 414
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.60 E-value=1.8e-14 Score=146.49 Aligned_cols=153 Identities=16% Similarity=0.069 Sum_probs=103.5
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (693)
.+|+++|.+|||||+|++++++.. .. ..+..+.-......+..++ ..+.||||+|.+.+
T Consensus 14 ~KIvvvGd~~VGKTsLi~r~~~~~-F~-~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~----------------- 74 (232)
T cd04174 14 CKLVLVGDVQCGKTAMLQVLAKDC-YP-ETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYY----------------- 74 (232)
T ss_pred EEEEEECCCCCcHHHHHHHHhcCC-CC-CCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhh-----------------
Confidence 479999999999999999999764 22 2222222222222344555 56899999997541
Q ss_pred cCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHH--HHHHHHHHhhcCCCcEEEEecccCCccc-
Q 005504 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPRK- 318 (693)
Q Consensus 242 ~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d--~~i~~~L~~~~~~~p~ivv~NK~D~~~~- 318 (693)
......+++.||++|+|+|.++..+... ..+...+++...+.|+|+|+||+|+...
T Consensus 75 ---------------------~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~ 133 (232)
T cd04174 75 ---------------------DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDL 133 (232)
T ss_pred ---------------------HHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccccc
Confidence 1223356789999999999997665543 2344555544357899999999998531
Q ss_pred -----------hhh---hHHHH-HhcCC-CCccccccCCC-CHHHHHHHHHhhcc
Q 005504 319 -----------GIM---QVSEF-WSLGF-SPLPISAISGT-GTGELLDLVCSELK 356 (693)
Q Consensus 319 -----------~~~---~~~~~-~~~g~-~~v~iSA~~g~-gi~~Ll~~i~~~l~ 356 (693)
... ....+ ...+. .++++||++|. |+++++..+...+.
T Consensus 134 ~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~ 188 (232)
T cd04174 134 STLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLCL 188 (232)
T ss_pred chhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHH
Confidence 111 11222 34566 48899999998 89999999877653
No 415
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=4.5e-15 Score=159.86 Aligned_cols=161 Identities=22% Similarity=0.268 Sum_probs=125.6
Q ss_pred CCCCeEEEEcCCCCChhhHHHHhhcCce--------------eeecCCCCceeeeEEEEEEecC---eeEEEEecCCccc
Q 005504 161 HLLPRVAIVGRPNVGKSALFNRLVGGNR--------------AIVVDEPGVTRDRMYGRSFWGE---HEFMLVDTGGVLN 223 (693)
Q Consensus 161 ~~~~~V~ivG~~nvGKSsL~n~l~~~~~--------------~~v~~~~~~T~~~~~~~~~~~~---~~~~lvDTpG~~~ 223 (693)
.+...++||-|.+.|||||.++|+.... -.+....|+|...+...+.|.+ .-+.+|||||+.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 4456899999999999999999974321 1245667999999999888877 7899999999998
Q ss_pred ccCCchhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCC
Q 005504 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (693)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~ 303 (693)
++.. ..+.+.-||.+|+|||+.+|+..++..-+....+ .+
T Consensus 138 Fs~E--------------------------------------VsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe--~~ 177 (650)
T KOG0462|consen 138 FSGE--------------------------------------VSRSLAACDGALLVVDASQGVQAQTVANFYLAFE--AG 177 (650)
T ss_pred ccce--------------------------------------ehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH--cC
Confidence 6532 3366788999999999999999987765544444 47
Q ss_pred CcEEEEecccCCccchhhhH----HHHHhc-CCCCccccccCCCCHHHHHHHHHhhcccccCc
Q 005504 304 KFIILAVNKCESPRKGIMQV----SEFWSL-GFSPLPISAISGTGTGELLDLVCSELKKVEGT 361 (693)
Q Consensus 304 ~p~ivv~NK~D~~~~~~~~~----~~~~~~-g~~~v~iSA~~g~gi~~Ll~~i~~~l~~~~~~ 361 (693)
..+|.|+||+|++..+.... .+.+.. +-.++.+||++|.|+.+|+++|++.+|.....
T Consensus 178 L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPpP~~~ 240 (650)
T KOG0462|consen 178 LAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPPPKGI 240 (650)
T ss_pred CeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCCCCCCC
Confidence 78999999999987543322 222222 22689999999999999999999999876543
No 416
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=7.3e-15 Score=139.55 Aligned_cols=157 Identities=19% Similarity=0.191 Sum_probs=109.2
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (693)
.+|+++|..|||||||+-++...+ +.....+.+..-.....+..++ .+|.+|||+|.+....
T Consensus 6 ~KvvLLG~~~VGKSSlV~Rfvk~~-F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~s--------------- 69 (200)
T KOG0092|consen 6 FKVVLLGDSGVGKSSLVLRFVKDQ-FHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHS--------------- 69 (200)
T ss_pred EEEEEECCCCCCchhhhhhhhhCc-cccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccc---------------
Confidence 479999999999999999998765 2222233333333444445555 6788999999986332
Q ss_pred cCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHH-HHHHHHHHhhc-CCCcEEEEecccCCccch
Q 005504 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPRKG 319 (693)
Q Consensus 242 ~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d-~~i~~~L~~~~-~~~p~ivv~NK~D~~~~~ 319 (693)
.+..+++.|+++|+|+|+++.-+.+. ..+++.|++.. .+.-+.+|.||+|+....
T Consensus 70 -----------------------lapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R 126 (200)
T KOG0092|consen 70 -----------------------LAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERR 126 (200)
T ss_pred -----------------------cccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcc
Confidence 12267899999999999997554433 23444444422 223355699999998743
Q ss_pred hhhH---HHH-HhcCCCCccccccCCCCHHHHHHHHHhhccccc
Q 005504 320 IMQV---SEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (693)
Q Consensus 320 ~~~~---~~~-~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l~~~~ 359 (693)
.... ..+ ...|+.++++||++|.|+++++..|.+.++...
T Consensus 127 ~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~~ 170 (200)
T KOG0092|consen 127 EVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIAEKLPCSD 170 (200)
T ss_pred cccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHHHhccCcc
Confidence 3322 222 346788999999999999999999999998654
No 417
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.60 E-value=7.8e-15 Score=141.63 Aligned_cols=145 Identities=17% Similarity=0.153 Sum_probs=96.0
Q ss_pred EEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCCC
Q 005504 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEG 245 (693)
Q Consensus 166 V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~g 245 (693)
|+++|.+|||||||++++.+... .....|.... ....+.+.+..+.+|||||...+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~-~~~~~pt~g~--~~~~i~~~~~~l~i~Dt~G~~~~--------------------- 57 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERS-LESVVPTTGF--NSVAIPTQDAIMELLEIGGSQNL--------------------- 57 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCC-cccccccCCc--ceEEEeeCCeEEEEEECCCCcch---------------------
Confidence 78999999999999999997642 2222222222 22345567788999999998541
Q ss_pred CchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHH--HHHHHHHHhhcCCCcEEEEecccCCccchhhhH
Q 005504 246 IPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPRKGIMQV 323 (693)
Q Consensus 246 ~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d--~~i~~~L~~~~~~~p~ivv~NK~D~~~~~~~~~ 323 (693)
...+..+++.+|+++||+|+.+..+... ..+.+++.. ..+.|+++|+||+|+........
T Consensus 58 -----------------~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~-~~~~piilv~NK~Dl~~~~~~~~ 119 (164)
T cd04162 58 -----------------RKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQH-PPDLPLVVLANKQDLPAARSVQE 119 (164)
T ss_pred -----------------hHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhC-CCCCcEEEEEeCcCCcCCCCHHH
Confidence 1334467899999999999887543221 122333322 25789999999999865422111
Q ss_pred -------HHH-HhcCCCCccccccC------CCCHHHHHHHHH
Q 005504 324 -------SEF-WSLGFSPLPISAIS------GTGTGELLDLVC 352 (693)
Q Consensus 324 -------~~~-~~~g~~~v~iSA~~------g~gi~~Ll~~i~ 352 (693)
..+ ...++.++++||++ ++|+.++++.+.
T Consensus 120 i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 120 IHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLI 162 (164)
T ss_pred HHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHh
Confidence 111 12244567778777 999999998775
No 418
>PRK00049 elongation factor Tu; Reviewed
Probab=99.60 E-value=1.2e-14 Score=159.72 Aligned_cols=153 Identities=19% Similarity=0.159 Sum_probs=114.8
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCc------eee---------ecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCc
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGN------RAI---------VVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQ 228 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~------~~~---------v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~ 228 (693)
.+|+++||+|+|||||+++|++.. ... .....|+|.+.....+.+++..+.++||||+.+
T Consensus 13 ~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~----- 87 (396)
T PRK00049 13 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD----- 87 (396)
T ss_pred EEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH-----
Confidence 479999999999999999998731 011 112568999987777777888999999999842
Q ss_pred hhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEE-
Q 005504 229 PNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFII- 307 (693)
Q Consensus 229 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~i- 307 (693)
+...+..++..+|++++|+|+..|...++.+++.++.. .+.|++
T Consensus 88 ---------------------------------f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~--~g~p~ii 132 (396)
T PRK00049 88 ---------------------------------YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ--VGVPYIV 132 (396)
T ss_pred ---------------------------------HHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHH--cCCCEEE
Confidence 12445567789999999999999999999999999887 478876
Q ss_pred EEecccCCccchh-h-----hHHHH-HhcC-----CCCccccccCCC----------CHHHHHHHHHhhcc
Q 005504 308 LAVNKCESPRKGI-M-----QVSEF-WSLG-----FSPLPISAISGT----------GTGELLDLVCSELK 356 (693)
Q Consensus 308 vv~NK~D~~~~~~-~-----~~~~~-~~~g-----~~~v~iSA~~g~----------gi~~Ll~~i~~~l~ 356 (693)
+++||+|+..... . ....+ ...+ .+++++||.+|. |+..|++.|.+.++
T Consensus 133 VvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 133 VFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred EEEeecCCcchHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 6899999974221 1 11112 1223 357899999875 57888998888765
No 419
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.60 E-value=4.7e-15 Score=135.83 Aligned_cols=154 Identities=18% Similarity=0.145 Sum_probs=106.0
Q ss_pred CcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCC--eEEEEeCccccchhhhccCCChhhHhHH
Q 005504 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSV 448 (693)
Q Consensus 371 ~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~--~i~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (693)
.+||.+||.+|||||||+-++.....-...+. .+..|.....+.. +|. ++.+|||||+++|..+.+
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~-tIGvDFkvk~m~v-dg~~~KlaiWDTAGqErFRtLTp---------- 78 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFDDLHPT-TIGVDFKVKVMQV-DGKRLKLAIWDTAGQERFRTLTP---------- 78 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccCccCCc-eeeeeEEEEEEEE-cCceEEEEEEeccchHhhhccCH----------
Confidence 48999999999999999999985432222221 1223333334443 343 789999999999876643
Q ss_pred HHHHHHHhcCCeEEEEecccccCCHHHHH-HHHHHHHh----CCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCC
Q 005504 449 NRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDW 523 (693)
Q Consensus 449 ~~~~~~i~~aDvvllViDa~~~~~~~d~~-~~~~l~~~----~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~ 523 (693)
.+++.|..+|+|+|.+...+...+. |++++.-+ ++-.++|+||+|...++.... +-...|+....
T Consensus 79 ----SyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~r------eEG~kfAr~h~ 148 (209)
T KOG0080|consen 79 ----SYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDR------EEGLKFARKHR 148 (209)
T ss_pred ----hHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccH------HHHHHHHHhhC
Confidence 2689999999999999887666654 66666543 456789999999753322221 11122333335
Q ss_pred CcEEEeccccCCCHHHHHHHHHH
Q 005504 524 APIVYSTAIAGQSVDKIIVAAEM 546 (693)
Q Consensus 524 ~piv~iSA~~g~gv~~L~~~i~~ 546 (693)
+-++++||++..||+..|+.+..
T Consensus 149 ~LFiE~SAkt~~~V~~~Feelve 171 (209)
T KOG0080|consen 149 CLFIECSAKTRENVQCCFEELVE 171 (209)
T ss_pred cEEEEcchhhhccHHHHHHHHHH
Confidence 67999999999999998887764
No 420
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.60 E-value=1.7e-14 Score=141.74 Aligned_cols=152 Identities=13% Similarity=0.096 Sum_probs=103.4
Q ss_pred CCeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005504 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (693)
Q Consensus 163 ~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~ 240 (693)
..+|+++|.+|||||||++++.+... ...+..+..+.....+.+++ ..+.+|||+|.+.+.
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f--~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~--------------- 67 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCF--PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYD--------------- 67 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCC--CCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhH---------------
Confidence 35799999999999999999998652 22333222222223445555 458899999985421
Q ss_pred ccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH--HHHHHHHhhcCCCcEEEEecccCCccc
Q 005504 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRK 318 (693)
Q Consensus 241 ~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~--~i~~~L~~~~~~~p~ivv~NK~D~~~~ 318 (693)
.....+++.+|++|+|+|..+..+.... .+.+.+++...+.|+++|+||+|+...
T Consensus 68 -----------------------~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~ 124 (182)
T cd04172 68 -----------------------NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTD 124 (182)
T ss_pred -----------------------hhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcC
Confidence 2223567889999999999877555442 344555554457899999999998531
Q ss_pred ------------hhh---hHHHH-HhcCC-CCccccccCCCC-HHHHHHHHHhh
Q 005504 319 ------------GIM---QVSEF-WSLGF-SPLPISAISGTG-TGELLDLVCSE 354 (693)
Q Consensus 319 ------------~~~---~~~~~-~~~g~-~~v~iSA~~g~g-i~~Ll~~i~~~ 354 (693)
... ....+ ...+. .++++||++|.| +.+++..+...
T Consensus 125 ~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 125 LTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred hhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHH
Confidence 001 11222 24564 689999999998 99999888763
No 421
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.60 E-value=2.4e-14 Score=157.62 Aligned_cols=154 Identities=18% Similarity=0.151 Sum_probs=110.3
Q ss_pred CCeEEEEcCCCCChhhHHHHhhcC------ceee---------ecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCC
Q 005504 163 LPRVAIVGRPNVGKSALFNRLVGG------NRAI---------VVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKS 227 (693)
Q Consensus 163 ~~~V~ivG~~nvGKSsL~n~l~~~------~~~~---------v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~ 227 (693)
..+|+++||+|+|||||+++|++. .... .....|+|.+.....+..++..+.+|||||+..+
T Consensus 12 ~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f--- 88 (394)
T TIGR00485 12 HVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY--- 88 (394)
T ss_pred eEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH---
Confidence 357999999999999999999843 1111 1123689999877766677888999999998641
Q ss_pred chhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEE
Q 005504 228 QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFII 307 (693)
Q Consensus 228 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~i 307 (693)
...+...+..+|++++|+|+..|...++.+.+.++.. .+.|.+
T Consensus 89 -----------------------------------~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~--~gi~~i 131 (394)
T TIGR00485 89 -----------------------------------VKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQ--VGVPYI 131 (394)
T ss_pred -----------------------------------HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEE
Confidence 1344566788999999999999999999999998876 467755
Q ss_pred -EEecccCCccchh-h-----hHHHH-HhcC-----CCCccccccCCC--------CHHHHHHHHHhhcc
Q 005504 308 -LAVNKCESPRKGI-M-----QVSEF-WSLG-----FSPLPISAISGT--------GTGELLDLVCSELK 356 (693)
Q Consensus 308 -vv~NK~D~~~~~~-~-----~~~~~-~~~g-----~~~v~iSA~~g~--------gi~~Ll~~i~~~l~ 356 (693)
+|+||+|+..... . ....+ ...+ ++++++||.+|. ++..|++.|.+.++
T Consensus 132 IvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~ 201 (394)
T TIGR00485 132 VVFLNKCDMVDDEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIP 201 (394)
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcCC
Confidence 6899999875321 1 11112 1223 468999999885 34556666655543
No 422
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.59 E-value=1.5e-14 Score=157.96 Aligned_cols=161 Identities=20% Similarity=0.268 Sum_probs=113.6
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEe---------------------c---CeeEEEEecC
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW---------------------G---EHEFMLVDTG 219 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~---------------------~---~~~~~lvDTp 219 (693)
.+|+|||.||||||||||+|++.+ +.++++|++|+++..+.... + ...+.++|||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~-~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLAD-VEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc-ccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 479999999999999999999986 56789999999999887552 2 2458899999
Q ss_pred CcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCC------------C
Q 005504 220 GVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL------------T 287 (693)
Q Consensus 220 G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~------------~ 287 (693)
|+........ -+..++...+++||++++|+|+..+. .
T Consensus 81 Gl~~ga~~g~-------------------------------glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~d 129 (396)
T PRK09602 81 GLVPGAHEGR-------------------------------GLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHD 129 (396)
T ss_pred CcCCCccchh-------------------------------hHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCC
Confidence 9975322111 13467788899999999999987211 1
Q ss_pred HH-HH-----H--------------------------------------------HHHHHHhh-----------------
Q 005504 288 AA-DE-----E--------------------------------------------IADWLRKN----------------- 300 (693)
Q Consensus 288 ~~-d~-----~--------------------------------------------i~~~L~~~----------------- 300 (693)
+. |. + +.+.|+..
T Consensus 130 p~~d~~~i~~EL~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I 209 (396)
T PRK09602 130 PVEDIKFLEEELDMWIYGILEKNWEKFSRKAQAEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLEL 209 (396)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHH
Confidence 11 00 0 11111110
Q ss_pred -----cCCCcEEEEecccCCccchhhhHHHHHhcCC-CCccccccCCCCHHH-HHHHHHhhccc
Q 005504 301 -----YMDKFIILAVNKCESPRKGIMQVSEFWSLGF-SPLPISAISGTGTGE-LLDLVCSELKK 357 (693)
Q Consensus 301 -----~~~~p~ivv~NK~D~~~~~~~~~~~~~~~g~-~~v~iSA~~g~gi~~-Ll~~i~~~l~~ 357 (693)
...+|+|+|+||+|...... ....+...++ .++++||.++.|+.. |++.+.+.++.
T Consensus 210 ~~~~l~t~KPvI~VlNK~D~~~~~~-~l~~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~lp~ 272 (396)
T PRK09602 210 ARELRKISKPMVIAANKADLPPAEE-NIERLKEEKYYIVVPTSAEAELALRRAAKAGLIDYIPG 272 (396)
T ss_pred HHhhhhcCCCEEEEEEchhcccchH-HHHHHHhcCCCcEEEEcchhhhhHHHHHHHhHHhhCCC
Confidence 03489999999999764221 1233333344 689999999999999 88889888875
No 423
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.59 E-value=1.3e-14 Score=160.04 Aligned_cols=155 Identities=17% Similarity=0.129 Sum_probs=105.8
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCce--eeecCCCCceeeeEEEEEE--------------e------------cCeeEEE
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNR--AIVVDEPGVTRDRMYGRSF--------------W------------GEHEFML 215 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~--~~v~~~~~~T~~~~~~~~~--------------~------------~~~~~~l 215 (693)
.+|+++|++|+|||||+++|.+... .......|+|.+..+.... . .+..+.+
T Consensus 5 ~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l 84 (406)
T TIGR03680 5 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVSF 84 (406)
T ss_pred EEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEEE
Confidence 4799999999999999999986421 0011122444443321111 0 1467999
Q ss_pred EecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCC-CHHHHHHH
Q 005504 216 VDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL-TAADEEIA 294 (693)
Q Consensus 216 vDTpG~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~-~~~d~~i~ 294 (693)
|||||+..+ ...+..++..+|++++|+|++++. ..+..+.+
T Consensus 85 iDtPGh~~f--------------------------------------~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l 126 (406)
T TIGR03680 85 VDAPGHETL--------------------------------------MATMLSGAALMDGALLVIAANEPCPQPQTKEHL 126 (406)
T ss_pred EECCCHHHH--------------------------------------HHHHHHHHHHCCEEEEEEECCCCccccchHHHH
Confidence 999998541 234556778899999999999887 66677766
Q ss_pred HHHHhhcCCCcEEEEecccCCccchhh-----hHHHHHh----cCCCCccccccCCCCHHHHHHHHHhhccc
Q 005504 295 DWLRKNYMDKFIILAVNKCESPRKGIM-----QVSEFWS----LGFSPLPISAISGTGTGELLDLVCSELKK 357 (693)
Q Consensus 295 ~~L~~~~~~~p~ivv~NK~D~~~~~~~-----~~~~~~~----~g~~~v~iSA~~g~gi~~Ll~~i~~~l~~ 357 (693)
..+... ..+|+++|+||+|+...... ....+.. .+.+++++||.+|.|+++|++.|...++.
T Consensus 127 ~~l~~~-gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~ 197 (406)
T TIGR03680 127 MALEII-GIKNIVIVQNKIDLVSKEKALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIPT 197 (406)
T ss_pred HHHHHc-CCCeEEEEEEccccCCHHHHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCCC
Confidence 666542 23679999999999753211 1111111 13468999999999999999999987764
No 424
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.59 E-value=1.6e-14 Score=138.36 Aligned_cols=153 Identities=22% Similarity=0.285 Sum_probs=106.0
Q ss_pred EEEeecCCCCChhhHHHHHhcCCCceecCCCCcc-cceEEEEEeCCCCC--eEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTT-RDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 373 ~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT-~d~~~~~~~~~~g~--~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
||+++|.+|||||||++++.+.... ..+..|. .+.....+.. ++. .+.+|||+|..++..+
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~~------------- 64 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFP--ENYIPTIGIDSYSKEVSI-DGKPVNLEIWDTSGQERFDSL------------- 64 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTT--SSSETTSSEEEEEEEEEE-TTEEEEEEEEEETTSGGGHHH-------------
T ss_pred CEEEECCCCCCHHHHHHHHHhhccc--cccccccccccccccccc-ccccccccccccccccccccc-------------
Confidence 7999999999999999999976422 2222222 4555555543 333 6999999998654221
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHHh---CCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCc
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~~---~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~p 525 (693)
....++.+|++++|+|.++..+.+.. .|+..+... +.|+++|+||.|+........ ++..+.....+ .+
T Consensus 65 -~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~-----~~~~~~~~~~~-~~ 137 (162)
T PF00071_consen 65 -RDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSV-----EEAQEFAKELG-VP 137 (162)
T ss_dssp -HHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCH-----HHHHHHHHHTT-SE
T ss_pred -ccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccchh-----hHHHHHHHHhC-CE
Confidence 12357899999999999886554443 366666543 479999999999865332221 22333334444 89
Q ss_pred EEEeccccCCCHHHHHHHHHHHH
Q 005504 526 IVYSTAIAGQSVDKIIVAAEMVD 548 (693)
Q Consensus 526 iv~iSA~~g~gv~~L~~~i~~~~ 548 (693)
++.+||+++.|+.++|..+.+..
T Consensus 138 ~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 138 YFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp EEEEBTTTTTTHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999887643
No 425
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.59 E-value=1.1e-14 Score=161.74 Aligned_cols=156 Identities=18% Similarity=0.161 Sum_probs=116.2
Q ss_pred cCCcEEEeecCCCCChhhHHHHHhcCCCc------------------------------eecCCCCcccceEEEEEeCCC
Q 005504 369 NRIPAIAIVGRPNVGKSSILNALVGEDRT------------------------------IVSPISGTTRDAIDTEFTGPE 418 (693)
Q Consensus 369 ~~~~~I~ivG~~n~GKSSLin~llg~~~~------------------------------~v~~~~gtT~d~~~~~~~~~~ 418 (693)
.+..+|+++|+.++|||||+.+|+-.... ...-..|+|.+.....+.. +
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~-~ 83 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET-T 83 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC-C
Confidence 34578999999999999999999732110 0001228888887777764 7
Q ss_pred CCeEEEEeCccccchhhhccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCC-------HHHHHHHHHHHHhCCc-EE
Q 005504 419 GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACIT-------EQDCRIAERIEQEGKG-CL 490 (693)
Q Consensus 419 g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~-------~~d~~~~~~l~~~~~p-~I 490 (693)
+..+.++||||+.+| ...+...+..+|++|+|+|+..+.. .|..+.+..+...++| +|
T Consensus 84 ~~~i~liDtPGh~df--------------~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iI 149 (447)
T PLN00043 84 KYYCTVIDAPGHRDF--------------IKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMI 149 (447)
T ss_pred CEEEEEEECCCHHHH--------------HHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEE
Confidence 789999999999775 2355667899999999999988621 4667777778888995 78
Q ss_pred EEEeccCCCCC-cchhhHHHHHHHHHHHHhcCC----CCcEEEeccccCCCHHH
Q 005504 491 IVVNKWDTIPN-KNQQTATYYEQDVREKLRALD----WAPIVYSTAIAGQSVDK 539 (693)
Q Consensus 491 vv~NK~Dl~~~-~~~~~~~~~~~~i~~~l~~~~----~~piv~iSA~~g~gv~~ 539 (693)
+++||+|+... .....++++.+++...+...+ .++++++||++|.|+.+
T Consensus 150 V~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 150 CCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred EEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 89999998621 223445566777777777655 37899999999999854
No 426
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.59 E-value=3.4e-14 Score=144.38 Aligned_cols=144 Identities=19% Similarity=0.301 Sum_probs=106.4
Q ss_pred cCCcEEEeecCCCCChhhHHHHHhcC-CCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhH
Q 005504 369 NRIPAIAIVGRPNVGKSSILNALVGE-DRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALS 447 (693)
Q Consensus 369 ~~~~~I~ivG~~n~GKSSLin~llg~-~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~ 447 (693)
.....|+++|.+|+|||||+|.|++. ....+....|+. . .+. ..+..+.++||||..
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i----~-i~~-~~~~~i~~vDtPg~~---------------- 94 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPI----T-VVT-GKKRRLTFIECPNDI---------------- 94 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccccE----E-EEe-cCCceEEEEeCCchH----------------
Confidence 44578999999999999999999975 233344444531 1 122 257789999999842
Q ss_pred HHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEE-EEeccCCCCCcchhhHHHHHHHHHHHHh--cCCCC
Q 005504 448 VNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLI-VVNKWDTIPNKNQQTATYYEQDVREKLR--ALDWA 524 (693)
Q Consensus 448 ~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Iv-v~NK~Dl~~~~~~~~~~~~~~~i~~~l~--~~~~~ 524 (693)
..++..++.+|++++|+|+..++..++..++..+...++|.++ |+||||+.... ...+.+.+.++..+. ...+.
T Consensus 95 -~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 171 (225)
T cd01882 95 -NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKN--KTLRKTKKRLKHRFWTEVYQGA 171 (225)
T ss_pred -HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcH--HHHHHHHHHHHHHHHHhhCCCC
Confidence 2344567889999999999999999999999999989999654 99999997532 223445556655444 45678
Q ss_pred cEEEeccccCCCH
Q 005504 525 PIVYSTAIAGQSV 537 (693)
Q Consensus 525 piv~iSA~~g~gv 537 (693)
+++++||+++-.+
T Consensus 172 ki~~iSa~~~~~~ 184 (225)
T cd01882 172 KLFYLSGIVHGRY 184 (225)
T ss_pred cEEEEeeccCCCC
Confidence 9999999998543
No 427
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.59 E-value=6.9e-15 Score=171.16 Aligned_cols=144 Identities=26% Similarity=0.325 Sum_probs=106.0
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeec--------------------------------CCCCceeeeEEEEEEecCe
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVV--------------------------------DEPGVTRDRMYGRSFWGEH 211 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~--------------------------------~~~~~T~~~~~~~~~~~~~ 211 (693)
.+|+++||+|+|||||+|+|+.....++. ...|+|.+.....+.+++.
T Consensus 25 ~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~~ 104 (632)
T PRK05506 25 LRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPKR 104 (632)
T ss_pred eEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCCc
Confidence 47999999999999999999865433321 1136677777778888999
Q ss_pred eEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH
Q 005504 212 EFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE 291 (693)
Q Consensus 212 ~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~ 291 (693)
.+.+|||||+..+ ......++..+|++++|+|+..|...++.
T Consensus 105 ~~~liDtPG~~~f--------------------------------------~~~~~~~~~~aD~~llVvda~~g~~~~t~ 146 (632)
T PRK05506 105 KFIVADTPGHEQY--------------------------------------TRNMVTGASTADLAIILVDARKGVLTQTR 146 (632)
T ss_pred eEEEEECCChHHH--------------------------------------HHHHHHHHHhCCEEEEEEECCCCccccCH
Confidence 9999999998531 12233568899999999999999988888
Q ss_pred HHHHHHHhhcCCCcEEEEecccCCccchh---hhH-HH---H-HhcCC---CCccccccCCCCHHH
Q 005504 292 EIADWLRKNYMDKFIILAVNKCESPRKGI---MQV-SE---F-WSLGF---SPLPISAISGTGTGE 346 (693)
Q Consensus 292 ~i~~~L~~~~~~~p~ivv~NK~D~~~~~~---~~~-~~---~-~~~g~---~~v~iSA~~g~gi~~ 346 (693)
+.+.++... ..+++|+|+||+|+.+... ... .+ + ...++ +++|+||.+|.|+.+
T Consensus 147 e~~~~~~~~-~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 147 RHSFIASLL-GIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHh-CCCeEEEEEEecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 877777663 2367899999999874111 111 11 1 23455 489999999999874
No 428
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.59 E-value=1.6e-14 Score=134.39 Aligned_cols=150 Identities=22% Similarity=0.226 Sum_probs=100.1
Q ss_pred eecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeC-CCCCeEEEEeCccccchhhhccCCChhhHhHHHHHHHH
Q 005504 376 IVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTG-PEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRA 454 (693)
Q Consensus 376 ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~-~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~ 454 (693)
++|.+|+|||||+|++.+.... ......+..+........ ..+..+.+|||||+..... .....
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------------~~~~~ 65 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFV-PEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRS--------------LRRLY 65 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcC-CcccccchhheeeEEEEECCEEEEEEEEecCChHHHHh--------------HHHHH
Confidence 5899999999999999987542 122222223333333332 1255899999999865311 12446
Q ss_pred HhcCCeEEEEecccccCCHHHHHHH-----HHHHHhCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcEEEe
Q 005504 455 IRRSDVVALVIEAMACITEQDCRIA-----ERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYS 529 (693)
Q Consensus 455 i~~aDvvllViDa~~~~~~~d~~~~-----~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~piv~i 529 (693)
++.+|++++|+|++++.+..+.... ......++|+++|+||+|+......... .....+......+++++
T Consensus 66 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 140 (157)
T cd00882 66 YRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEE-----ELAEQLAKELGVPYFET 140 (157)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHH-----HHHHHHHhhcCCcEEEE
Confidence 7899999999999987655554322 2334458999999999999754332110 01222233346899999
Q ss_pred ccccCCCHHHHHHHHH
Q 005504 530 TAIAGQSVDKIIVAAE 545 (693)
Q Consensus 530 SA~~g~gv~~L~~~i~ 545 (693)
||+++.|+.++++++.
T Consensus 141 s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 141 SAKTGENVEELFEELA 156 (157)
T ss_pred ecCCCCChHHHHHHHh
Confidence 9999999999998874
No 429
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.58 E-value=8.9e-15 Score=161.35 Aligned_cols=143 Identities=25% Similarity=0.328 Sum_probs=106.0
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceee--------------------------------ecCCCCceeeeEEEEEEecCee
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAI--------------------------------VVDEPGVTRDRMYGRSFWGEHE 212 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~--------------------------------v~~~~~~T~~~~~~~~~~~~~~ 212 (693)
+|+++||+|+|||||+++|+.....+ .....|+|.+.....+.+++..
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~ 81 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK 81 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence 68999999999999999996432111 0112377888888888899999
Q ss_pred EEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHH
Q 005504 213 FMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE 292 (693)
Q Consensus 213 ~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~ 292 (693)
+.+|||||+..+ ...+..++..+|++|+|+|+..|+..++.+
T Consensus 82 ~~liDtPGh~~f--------------------------------------~~~~~~~~~~aD~allVVda~~G~~~qt~~ 123 (406)
T TIGR02034 82 FIVADTPGHEQY--------------------------------------TRNMATGASTADLAVLLVDARKGVLEQTRR 123 (406)
T ss_pred EEEEeCCCHHHH--------------------------------------HHHHHHHHhhCCEEEEEEECCCCCccccHH
Confidence 999999998541 123446788999999999999999998888
Q ss_pred HHHHHHhhcCCCcEEEEecccCCccchhh-------hHHHH-HhcCC---CCccccccCCCCHHH
Q 005504 293 IADWLRKNYMDKFIILAVNKCESPRKGIM-------QVSEF-WSLGF---SPLPISAISGTGTGE 346 (693)
Q Consensus 293 i~~~L~~~~~~~p~ivv~NK~D~~~~~~~-------~~~~~-~~~g~---~~v~iSA~~g~gi~~ 346 (693)
.+.+++.. ..+++++|+||+|+...... ....+ ...++ +++++||.+|.|+.+
T Consensus 124 ~~~~~~~~-~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 124 HSYIASLL-GIRHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHc-CCCcEEEEEEecccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 88777663 23468999999998742211 11111 22344 589999999999986
No 430
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.58 E-value=4.3e-14 Score=150.00 Aligned_cols=88 Identities=28% Similarity=0.272 Sum_probs=68.0
Q ss_pred EEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeC-----------------------CCCCeEEEEeCccc
Q 005504 374 IAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTG-----------------------PEGQKFRLIDTAGI 430 (693)
Q Consensus 374 I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~-----------------------~~g~~i~liDTpG~ 430 (693)
|+++|.||||||||+|+|++.. ..++++|+||+++..+.... ..+.++.+|||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~-~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLAD-VEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCC-CcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 5899999999999999999875 57899999999987654432 12247999999999
Q ss_pred cchhhhccCCChhhHhHHHHHHHHHhcCCeEEEEecccc
Q 005504 431 RKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMA 469 (693)
Q Consensus 431 ~~~~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~ 469 (693)
.+.. ........+++.+++.||++++|+|+..
T Consensus 80 v~ga-------~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 80 VPGA-------HEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCCc-------cchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 6421 1122234577889999999999999963
No 431
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.58 E-value=1.4e-14 Score=134.19 Aligned_cols=140 Identities=21% Similarity=0.228 Sum_probs=93.9
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHH-
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR- 450 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~- 450 (693)
.||+++|+++||||||+++|.|.+.. . .-|. ...+ .+ .+|||||-. +|.-...+
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~-~----~KTq---~i~~---~~---~~IDTPGEy-----------iE~~~~y~a 56 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIR-Y----KKTQ---AIEY---YD---NTIDTPGEY-----------IENPRFYHA 56 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCC-c----Cccc---eeEe---cc---cEEECChhh-----------eeCHHHHHH
Confidence 48999999999999999999986532 1 0111 1122 12 459999932 22221122
Q ss_pred HHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcEEEec
Q 005504 451 AFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYST 530 (693)
Q Consensus 451 ~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~piv~iS 530 (693)
.+.....||++++|.|++++.+.--- ....-.++|+|-|+||+|+..... + .+..++.|...+...++.+|
T Consensus 57 Li~ta~dad~V~ll~dat~~~~~~pP---~fa~~f~~pvIGVITK~Dl~~~~~-~-----i~~a~~~L~~aG~~~if~vS 127 (143)
T PF10662_consen 57 LIVTAQDADVVLLLQDATEPRSVFPP---GFASMFNKPVIGVITKIDLPSDDA-N-----IERAKKWLKNAGVKEIFEVS 127 (143)
T ss_pred HHHHHhhCCEEEEEecCCCCCccCCc---hhhcccCCCEEEEEECccCccchh-h-----HHHHHHHHHHcCCCCeEEEE
Confidence 22334689999999999886432222 223345799999999999973211 1 22445566666667889999
Q ss_pred cccCCCHHHHHHHHH
Q 005504 531 AIAGQSVDKIIVAAE 545 (693)
Q Consensus 531 A~~g~gv~~L~~~i~ 545 (693)
|.+|.|+++|.+.|.
T Consensus 128 ~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 128 AVTGEGIEELKDYLE 142 (143)
T ss_pred CCCCcCHHHHHHHHh
Confidence 999999999998875
No 432
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.58 E-value=7.5e-15 Score=154.50 Aligned_cols=141 Identities=22% Similarity=0.230 Sum_probs=100.2
Q ss_pred HHhcCeEEEEEeCCCCC-CHHHH-HHHHHHHhhcCCCcEEEEecccCCccchhh-h-HHHHHhcCCCCccccccCCCCHH
Q 005504 270 IEESCVIIFLVDGQAGL-TAADE-EIADWLRKNYMDKFIILAVNKCESPRKGIM-Q-VSEFWSLGFSPLPISAISGTGTG 345 (693)
Q Consensus 270 i~~adiil~VvD~~~~~-~~~d~-~i~~~L~~~~~~~p~ivv~NK~D~~~~~~~-~-~~~~~~~g~~~v~iSA~~g~gi~ 345 (693)
+.++|++++|+|+..+. +.... .++..+.. .++|+++|+||+|+...... . ...+...|+.++++||.+|.|++
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~--~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~ 153 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA--AGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEGLD 153 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH--cCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCccHH
Confidence 67899999999998876 43221 12222333 47899999999999654221 1 12233467788999999999999
Q ss_pred HHHHHHHhhcccccCccchhhhccCCcEEEeecCCCCChhhHHHHHhcCCCceecCC-------CCcccceEEEEEeCCC
Q 005504 346 ELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPI-------SGTTRDAIDTEFTGPE 418 (693)
Q Consensus 346 ~Ll~~i~~~l~~~~~~~~~~~~~~~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~-------~gtT~d~~~~~~~~~~ 418 (693)
+|...|.. ..++++|.+|||||||+|+|+|.....++.. .+||++.....+. .
T Consensus 154 ~L~~~L~~------------------k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~--~ 213 (287)
T cd01854 154 ELREYLKG------------------KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLP--G 213 (287)
T ss_pred HHHhhhcc------------------ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcC--C
Confidence 98876631 3689999999999999999999765544333 2477776554443 1
Q ss_pred CCeEEEEeCccccchh
Q 005504 419 GQKFRLIDTAGIRKRA 434 (693)
Q Consensus 419 g~~i~liDTpG~~~~~ 434 (693)
+ ..++||||+.++.
T Consensus 214 ~--~~liDtPG~~~~~ 227 (287)
T cd01854 214 G--GLLIDTPGFREFG 227 (287)
T ss_pred C--CEEEECCCCCccC
Confidence 2 3799999998764
No 433
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=2.3e-14 Score=136.66 Aligned_cols=155 Identities=21% Similarity=0.257 Sum_probs=114.1
Q ss_pred CCeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCe--eEEEEecCCcccccCCchhhhhhhhhhhc
Q 005504 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (693)
Q Consensus 163 ~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~lvDTpG~~~~~~~~~~~~~~~~~~~~ 240 (693)
..+|.|+|..|||||.|+.++.+.. ..-.-...+..|.....+.++|. +++||||+|.++
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~-f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQER----------------- 70 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKDDT-FTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQER----------------- 70 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhccCC-cchhhcceeeeEEEEEEeeecceEEEEEeeeccccHH-----------------
Confidence 3589999999999999999999875 23233344556666777777774 599999999965
Q ss_pred ccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHH---hhc-CCCcEEEEecccCCc
Q 005504 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLR---KNY-MDKFIILAVNKCESP 316 (693)
Q Consensus 241 ~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~---~~~-~~~p~ivv~NK~D~~ 316 (693)
++..+..+++.|+.||+|+|.+..-+.. .+.+|+. +.. .+.|.++|.||||+.
T Consensus 71 ---------------------Frtit~syYR~ahGii~vyDiT~~~SF~--~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~ 127 (205)
T KOG0084|consen 71 ---------------------FRTITSSYYRGAHGIIFVYDITKQESFN--NVKRWIQEIDRYASENVPKLLVGNKCDLT 127 (205)
T ss_pred ---------------------HhhhhHhhccCCCeEEEEEEcccHHHhh--hHHHHHHHhhhhccCCCCeEEEeeccccH
Confidence 2356678999999999999998754442 2334443 322 356999999999998
Q ss_pred cchhhh---HHHH-HhcCCC-CccccccCCCCHHHHHHHHHhhcccc
Q 005504 317 RKGIMQ---VSEF-WSLGFS-PLPISAISGTGTGELLDLVCSELKKV 358 (693)
Q Consensus 317 ~~~~~~---~~~~-~~~g~~-~v~iSA~~g~gi~~Ll~~i~~~l~~~ 358 (693)
+..... ..+| ..++.+ ++++||+.+.|+++.+..|...+...
T Consensus 128 ~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la~~lk~~ 174 (205)
T KOG0084|consen 128 EKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTLAKELKQR 174 (205)
T ss_pred hheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHHHHHHHHh
Confidence 754322 2223 345666 88999999999999999988776543
No 434
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=3.7e-14 Score=137.30 Aligned_cols=156 Identities=17% Similarity=0.136 Sum_probs=117.4
Q ss_pred CCeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCe--eEEEEecCCcccccCCchhhhhhhhhhhc
Q 005504 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (693)
Q Consensus 163 ~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~lvDTpG~~~~~~~~~~~~~~~~~~~~ 240 (693)
..+|+++|.+|||||+++.++.... +........-.|.....+.++|. .+++|||+|.+.
T Consensus 12 ~~kvlliGDs~vGKt~~l~rf~d~~-f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQer----------------- 73 (207)
T KOG0078|consen 12 LFKLLLIGDSGVGKTCLLLRFSDDS-FNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQER----------------- 73 (207)
T ss_pred EEEEEEECCCCCchhHhhhhhhhcc-CcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchh-----------------
Confidence 4589999999999999999998764 33333334556666667777774 588999999975
Q ss_pred ccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH-HHHHHHHhhcC-CCcEEEEecccCCccc
Q 005504 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYM-DKFIILAVNKCESPRK 318 (693)
Q Consensus 241 ~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~-~i~~~L~~~~~-~~p~ivv~NK~D~~~~ 318 (693)
+...+..+++.|+.+++|+|..+.-+.+.. .+++.+.++.. +.|.++|.||+|+..+
T Consensus 74 ---------------------f~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~ 132 (207)
T KOG0078|consen 74 ---------------------FRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEK 132 (207)
T ss_pred ---------------------HHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeecccccccc
Confidence 236677899999999999999976655443 35555555433 7899999999998764
Q ss_pred hhhhH----HHHHhcCCCCccccccCCCCHHHHHHHHHhhccc
Q 005504 319 GIMQV----SEFWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (693)
Q Consensus 319 ~~~~~----~~~~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l~~ 357 (693)
..... .-...+|..++++||++|.|+++.+-.+...+.+
T Consensus 133 R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 133 RQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSLARDILQ 175 (207)
T ss_pred ccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHHHHHHHh
Confidence 32211 2234568899999999999999999888877664
No 435
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.58 E-value=2.6e-14 Score=139.53 Aligned_cols=156 Identities=18% Similarity=0.174 Sum_probs=105.9
Q ss_pred CCcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 370 ~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
+..+|+++|..|+||||++++|.......+.++.|... ..+.+ ++..+.+||.+|.......+.
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~----~~i~~-~~~~~~~~d~gG~~~~~~~w~----------- 76 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNI----EEIKY-KGYSLTIWDLGGQESFRPLWK----------- 76 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEE----EEEEE-TTEEEEEEEESSSGGGGGGGG-----------
T ss_pred cEEEEEEECCCccchHHHHHHhhhccccccCccccccc----ceeee-CcEEEEEEeccccccccccce-----------
Confidence 34799999999999999999999765444444334333 23443 678999999999877655542
Q ss_pred HHHHHHhcCCeEEEEecccccCC-HHHHHHHHHHHH----hCCcEEEEEeccCCCCCcchhhHHHHHHHHH-HHHhcCCC
Q 005504 450 RAFRAIRRSDVVALVIEAMACIT-EQDCRIAERIEQ----EGKGCLIVVNKWDTIPNKNQQTATYYEQDVR-EKLRALDW 523 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~-~~d~~~~~~l~~----~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~-~~l~~~~~ 523 (693)
.++..+|++|||+|+++... .+....+..+.. .++|++|++||.|+...... +++...+. ..+.....
T Consensus 77 ---~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~---~~i~~~l~l~~l~~~~~ 150 (175)
T PF00025_consen 77 ---SYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSE---EEIKEYLGLEKLKNKRP 150 (175)
T ss_dssp ---GGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTH---HHHHHHTTGGGTTSSSC
T ss_pred ---eeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchh---hHHHhhhhhhhcccCCc
Confidence 14678999999999987432 222233333332 37999999999998654321 22322221 11221224
Q ss_pred CcEEEeccccCCCHHHHHHHHHHH
Q 005504 524 APIVYSTAIAGQSVDKIIVAAEMV 547 (693)
Q Consensus 524 ~piv~iSA~~g~gv~~L~~~i~~~ 547 (693)
..++.+||++|.|+.+.+++|.+.
T Consensus 151 ~~v~~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 151 WSVFSCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp EEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred eEEEeeeccCCcCHHHHHHHHHhc
Confidence 568999999999999999998753
No 436
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=99.58 E-value=8.8e-15 Score=157.11 Aligned_cols=165 Identities=25% Similarity=0.288 Sum_probs=117.2
Q ss_pred HHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCccchhhhHH--HHHhcCCCCccccccC-
Q 005504 264 RQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVS--EFWSLGFSPLPISAIS- 340 (693)
Q Consensus 264 ~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~~~~~~--~~~~~g~~~v~iSA~~- 340 (693)
+|.++.++.+|+|+.+||+++++......+.+++......|..++++||+|+........+ .|...+++++.-||..
T Consensus 166 RQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni~~vf~SA~~a 245 (562)
T KOG1424|consen 166 RQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNNIPVVFFSALAA 245 (562)
T ss_pred HHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcCceEEEEecccc
Confidence 7899999999999999999999888778888888775555778999999999987655544 3445667788888875
Q ss_pred -----CCCHHHHHHH---HHhh------------cccccC--cc----------------chhhhccCCcEEEeecCCCC
Q 005504 341 -----GTGTGELLDL---VCSE------------LKKVEG--TE----------------DLVEEENRIPAIAIVGRPNV 382 (693)
Q Consensus 341 -----g~gi~~Ll~~---i~~~------------l~~~~~--~~----------------~~~~~~~~~~~I~ivG~~n~ 382 (693)
+.++.+-+.. +... +...+. .+ ...+.-.....|++||.|||
T Consensus 246 t~~~~~~~~~e~~r~~d~~~~~~~~~~~~~~d~~i~r~~~d~~e~~~v~~~~~~s~~~~~~t~~~~~~~vtVG~VGYPNV 325 (562)
T KOG1424|consen 246 TEQLESKVLKEDRRSLDGVSRALGAIFVGEVDLKIARDKGDGEEIEDVEQLRLISAMEPTPTGERYKDVVTVGFVGYPNV 325 (562)
T ss_pred cccccccchhhhhhcccchhhhccccccccchhhhhhhcccccchhhHHhhhhhhccccCCCCcCCCceeEEEeecCCCC
Confidence 1112111110 0000 000000 00 00001112478999999999
Q ss_pred ChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccc
Q 005504 383 GKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRK 432 (693)
Q Consensus 383 GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~ 432 (693)
||||+||+|.|.+++-|+.+||-|+......+. ..+.|+|.||+.=
T Consensus 326 GKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls----~~v~LCDCPGLVf 371 (562)
T KOG1424|consen 326 GKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS----PSVCLCDCPGLVF 371 (562)
T ss_pred chhHHHHHHhcCceeeeecCCCCcceeEEEEcC----CCceecCCCCccc
Confidence 999999999999999999999999987766654 2579999999853
No 437
>PRK12739 elongation factor G; Reviewed
Probab=99.58 E-value=2.7e-14 Score=167.67 Aligned_cols=116 Identities=19% Similarity=0.239 Sum_probs=97.0
Q ss_pred CCCeEEEEcCCCCChhhHHHHhhcCce-----eeec------------CCCCceeeeEEEEEEecCeeEEEEecCCcccc
Q 005504 162 LLPRVAIVGRPNVGKSALFNRLVGGNR-----AIVV------------DEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNV 224 (693)
Q Consensus 162 ~~~~V~ivG~~nvGKSsL~n~l~~~~~-----~~v~------------~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~ 224 (693)
...+|+|+||+|+|||||+|+|+.... ..+. ...|+|.+.....+.|++..+.+|||||+.++
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f 86 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF 86 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH
Confidence 356899999999999999999974311 1122 25689999999999999999999999998531
Q ss_pred cCCchhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCC
Q 005504 225 SKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDK 304 (693)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~ 304 (693)
...+..++..+|++++|+|+..|...++..++.++.+ .++
T Consensus 87 --------------------------------------~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~--~~~ 126 (691)
T PRK12739 87 --------------------------------------TIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADK--YGV 126 (691)
T ss_pred --------------------------------------HHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHH--cCC
Confidence 1346788999999999999999999999999999887 578
Q ss_pred cEEEEecccCCcc
Q 005504 305 FIILAVNKCESPR 317 (693)
Q Consensus 305 p~ivv~NK~D~~~ 317 (693)
|+|+++||+|+..
T Consensus 127 p~iv~iNK~D~~~ 139 (691)
T PRK12739 127 PRIVFVNKMDRIG 139 (691)
T ss_pred CEEEEEECCCCCC
Confidence 9999999999864
No 438
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.58 E-value=3.7e-14 Score=160.34 Aligned_cols=116 Identities=21% Similarity=0.296 Sum_probs=89.6
Q ss_pred cCCcEEEeecCCCCChhhHHHHHhcCCCce-----e----------cC------CCCcccceEEEEEeCCCCCeEEEEeC
Q 005504 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTI-----V----------SP------ISGTTRDAIDTEFTGPEGQKFRLIDT 427 (693)
Q Consensus 369 ~~~~~I~ivG~~n~GKSSLin~llg~~~~~-----v----------~~------~~gtT~d~~~~~~~~~~g~~i~liDT 427 (693)
.+.++|+++|++|+|||||+++|+.....+ + ++ ..|.|.......+.+ ++..+.+|||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~-~~~~inliDT 87 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPY-RDCLVNLLDT 87 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEee-CCeEEEEEEC
Confidence 345799999999999999999996322111 1 11 114555555555664 7889999999
Q ss_pred ccccchhhhccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCC
Q 005504 428 AGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTI 499 (693)
Q Consensus 428 pG~~~~~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~ 499 (693)
||+.++. ..+.++++.+|++|+|+|++.++..+...+++.+...++|+++++||+|+.
T Consensus 88 PG~~df~--------------~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~ 145 (527)
T TIGR00503 88 PGHEDFS--------------EDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRD 145 (527)
T ss_pred CChhhHH--------------HHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccc
Confidence 9996542 245667899999999999999988888888888888899999999999975
No 439
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.58 E-value=1.7e-14 Score=161.73 Aligned_cols=146 Identities=24% Similarity=0.285 Sum_probs=105.3
Q ss_pred CCeEEEEcCCCCChhhHHHHhhcCceeeec--------------------------------CCCCceeeeEEEEEEecC
Q 005504 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVV--------------------------------DEPGVTRDRMYGRSFWGE 210 (693)
Q Consensus 163 ~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~--------------------------------~~~~~T~~~~~~~~~~~~ 210 (693)
..+|+++||+|+|||||+++|+.....+.. ...|+|.+.....+.+++
T Consensus 27 ~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~~ 106 (474)
T PRK05124 27 LLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEK 106 (474)
T ss_pred ceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccCC
Confidence 468999999999999999999855322211 113577788777788889
Q ss_pred eeEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHH
Q 005504 211 HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD 290 (693)
Q Consensus 211 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d 290 (693)
..+.+|||||+.. +.+.+...+..+|++|+|+|+..|+..++
T Consensus 107 ~~i~~iDTPGh~~--------------------------------------f~~~~~~~l~~aD~allVVDa~~G~~~qt 148 (474)
T PRK05124 107 RKFIIADTPGHEQ--------------------------------------YTRNMATGASTCDLAILLIDARKGVLDQT 148 (474)
T ss_pred cEEEEEECCCcHH--------------------------------------HHHHHHHHHhhCCEEEEEEECCCCccccc
Confidence 9999999999753 11234456789999999999999988877
Q ss_pred HHHHHHHHhhcCCCcEEEEecccCCccchhh---hH----HHHH-hcC----CCCccccccCCCCHHHH
Q 005504 291 EEIADWLRKNYMDKFIILAVNKCESPRKGIM---QV----SEFW-SLG----FSPLPISAISGTGTGEL 347 (693)
Q Consensus 291 ~~i~~~L~~~~~~~p~ivv~NK~D~~~~~~~---~~----~~~~-~~g----~~~v~iSA~~g~gi~~L 347 (693)
.+.+.++... ..+|+|+|+||+|+...... .. ..+. ..+ .+++|+||.+|.|+.++
T Consensus 149 ~~~~~l~~~l-g~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 149 RRHSFIATLL-GIKHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred hHHHHHHHHh-CCCceEEEEEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 7766666553 23578999999998742211 11 1111 223 36899999999999764
No 440
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.58 E-value=3.3e-14 Score=157.68 Aligned_cols=162 Identities=18% Similarity=0.155 Sum_probs=113.5
Q ss_pred CCcEEEeecCCCCChhhHHHHHhcCCCce--ecCCCCcccceEEEEE---------------eCCC--------------
Q 005504 370 RIPAIAIVGRPNVGKSSILNALVGEDRTI--VSPISGTTRDAIDTEF---------------TGPE-------------- 418 (693)
Q Consensus 370 ~~~~I~ivG~~n~GKSSLin~llg~~~~~--v~~~~gtT~d~~~~~~---------------~~~~-------------- 418 (693)
...+|+++|+..+|||||+.+|+|..... -.-..|.|.+.-...+ .+..
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHK 112 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccc
Confidence 44799999999999999999999854221 1122355543221111 0111
Q ss_pred ---CCeEEEEeCccccchhhhccCCChhhHhHHHHHHHHHhcCCeEEEEeccccc-CCHHHHHHHHHHHHhCC-cEEEEE
Q 005504 419 ---GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMAC-ITEQDCRIAERIEQEGK-GCLIVV 493 (693)
Q Consensus 419 ---g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~-~~~~d~~~~~~l~~~~~-p~Ivv~ 493 (693)
...+.|+||||+.++ +..++..+..+|++++|+|+.++ ...|..+.+..+...++ ++|+|+
T Consensus 113 ~~~~~~i~~IDtPGH~~f--------------i~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvl 178 (460)
T PTZ00327 113 MTLKRHVSFVDCPGHDIL--------------MATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQ 178 (460)
T ss_pred ccccceEeeeeCCCHHHH--------------HHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEE
Confidence 247899999998654 34667778899999999999986 57777777776666776 589999
Q ss_pred eccCCCCCcchhhHHHHHHHHHHHHhc--CCCCcEEEeccccCCCHHHHHHHHHHHH
Q 005504 494 NKWDTIPNKNQQTATYYEQDVREKLRA--LDWAPIVYSTAIAGQSVDKIIVAAEMVD 548 (693)
Q Consensus 494 NK~Dl~~~~~~~~~~~~~~~i~~~l~~--~~~~piv~iSA~~g~gv~~L~~~i~~~~ 548 (693)
||+|+.+.. ..++..+++.+.+.. ....|++++||++|.|++.|++.|.+..
T Consensus 179 NKiDlv~~~---~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 179 NKIDLVKEA---QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred ecccccCHH---HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 999997532 223333445444432 2467999999999999999999998543
No 441
>PLN03126 Elongation factor Tu; Provisional
Probab=99.57 E-value=3.6e-14 Score=158.45 Aligned_cols=140 Identities=16% Similarity=0.139 Sum_probs=105.3
Q ss_pred CCeEEEEcCCCCChhhHHHHhhcCcee---------------eecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCC
Q 005504 163 LPRVAIVGRPNVGKSALFNRLVGGNRA---------------IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKS 227 (693)
Q Consensus 163 ~~~V~ivG~~nvGKSsL~n~l~~~~~~---------------~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~ 227 (693)
..+|+++||+|+|||||+++|++.... ......|+|.+.....+.+++..+.+|||||+.+
T Consensus 81 ~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~---- 156 (478)
T PLN03126 81 HVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD---- 156 (478)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH----
Confidence 357999999999999999999953111 1133458888887777788899999999999864
Q ss_pred chhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCc-E
Q 005504 228 QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF-I 306 (693)
Q Consensus 228 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p-~ 306 (693)
+...+..++..+|++++|+|+..|...++.+.+..+.. .++| +
T Consensus 157 ----------------------------------f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~--~gi~~i 200 (478)
T PLN03126 157 ----------------------------------YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQ--VGVPNM 200 (478)
T ss_pred ----------------------------------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeE
Confidence 12445677889999999999999999999999888876 4777 7
Q ss_pred EEEecccCCccchh-h-----hHHHH-HhcC-----CCCccccccCCC
Q 005504 307 ILAVNKCESPRKGI-M-----QVSEF-WSLG-----FSPLPISAISGT 342 (693)
Q Consensus 307 ivv~NK~D~~~~~~-~-----~~~~~-~~~g-----~~~v~iSA~~g~ 342 (693)
|+++||+|+...+. . ....+ ...| .+++++||.+|.
T Consensus 201 IvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 201 VVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPIISGSALLAL 248 (478)
T ss_pred EEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEccccc
Confidence 88999999975321 1 11112 2233 357899999884
No 442
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.57 E-value=3e-14 Score=157.24 Aligned_cols=155 Identities=19% Similarity=0.175 Sum_probs=107.9
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCc--eeeecCCCCceeeeEEEEEEec--------------------------CeeEEE
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGN--RAIVVDEPGVTRDRMYGRSFWG--------------------------EHEFML 215 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~--~~~v~~~~~~T~~~~~~~~~~~--------------------------~~~~~l 215 (693)
.+|+++||.++|||||+.+|.+.- ........|.|.+.......+. ...+.+
T Consensus 10 ~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l 89 (411)
T PRK04000 10 VNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRVSF 89 (411)
T ss_pred EEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEEEE
Confidence 479999999999999999997641 1111123356665543222221 257999
Q ss_pred EecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCC-CHHHHHHH
Q 005504 216 VDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL-TAADEEIA 294 (693)
Q Consensus 216 vDTpG~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~-~~~d~~i~ 294 (693)
|||||+.. +...+...+..+|++++|+|++++. ..++.+.+
T Consensus 90 iDtPG~~~--------------------------------------f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l 131 (411)
T PRK04000 90 VDAPGHET--------------------------------------LMATMLSGAALMDGAILVIAANEPCPQPQTKEHL 131 (411)
T ss_pred EECCCHHH--------------------------------------HHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHH
Confidence 99999853 1234556778899999999999887 67777777
Q ss_pred HHHHhhcCCCcEEEEecccCCccchhh-----hHHHHHh----cCCCCccccccCCCCHHHHHHHHHhhccc
Q 005504 295 DWLRKNYMDKFIILAVNKCESPRKGIM-----QVSEFWS----LGFSPLPISAISGTGTGELLDLVCSELKK 357 (693)
Q Consensus 295 ~~L~~~~~~~p~ivv~NK~D~~~~~~~-----~~~~~~~----~g~~~v~iSA~~g~gi~~Ll~~i~~~l~~ 357 (693)
.++... ..+|+++|+||+|+.+.... ....+.. .+.+++++||.+|.|+++|++.|...++.
T Consensus 132 ~~l~~~-~i~~iiVVlNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 132 MALDII-GIKNIVIVQNKIDLVSKERALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred HHHHHc-CCCcEEEEEEeeccccchhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 777553 23579999999998753221 1111211 13468999999999999999999987764
No 443
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.57 E-value=3.4e-14 Score=141.64 Aligned_cols=150 Identities=17% Similarity=0.079 Sum_probs=101.4
Q ss_pred EcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhcccCCCC
Q 005504 169 VGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGI 246 (693)
Q Consensus 169 vG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~g~ 246 (693)
+|.+|||||||+++++... ......+.+..+.....+.+++ ..+.+|||||...+.
T Consensus 1 vG~~~vGKTsLi~r~~~~~-f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~--------------------- 58 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGE-FEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFG--------------------- 58 (200)
T ss_pred CCCCCCCHHHHHHHHhcCC-CCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhh---------------------
Confidence 6999999999999999654 2111222222333333334443 579999999986422
Q ss_pred chhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH-HHHHHHHhhcCCCcEEEEecccCCccchhh-hHH
Q 005504 247 PLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRKGIM-QVS 324 (693)
Q Consensus 247 ~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~-~i~~~L~~~~~~~p~ivv~NK~D~~~~~~~-~~~ 324 (693)
.....+++.+|++|+|+|.....+.... .+.+.+++...+.|+++|+||+|+...... ...
T Consensus 59 -----------------~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~ 121 (200)
T smart00176 59 -----------------GLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSI 121 (200)
T ss_pred -----------------hhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHH
Confidence 2334578899999999999987555433 344445444357899999999998542211 111
Q ss_pred HH-HhcCCCCccccccCCCCHHHHHHHHHhhccc
Q 005504 325 EF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (693)
Q Consensus 325 ~~-~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l~~ 357 (693)
.+ ...++.++++||++|.|+.++++.|.+.+.+
T Consensus 122 ~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~ 155 (200)
T smart00176 122 TFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 155 (200)
T ss_pred HHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 22 2356689999999999999999999877643
No 444
>PRK13351 elongation factor G; Reviewed
Probab=99.57 E-value=4.4e-14 Score=166.16 Aligned_cols=117 Identities=23% Similarity=0.311 Sum_probs=91.9
Q ss_pred CCcEEEeecCCCCChhhHHHHHhcCCCce-----------ecC------CCCcccceEEEEEeCCCCCeEEEEeCccccc
Q 005504 370 RIPAIAIVGRPNVGKSSILNALVGEDRTI-----------VSP------ISGTTRDAIDTEFTGPEGQKFRLIDTAGIRK 432 (693)
Q Consensus 370 ~~~~I~ivG~~n~GKSSLin~llg~~~~~-----------v~~------~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~ 432 (693)
..++|+++|+.|+|||||+++|+.....+ +.+ ..|.|.......+.+ ++..+.+|||||+.+
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~d 85 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW-DNHRINLIDTPGHID 85 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE-CCEEEEEEECCCcHH
Confidence 35799999999999999999998532211 111 135566655555654 678999999999976
Q ss_pred hhhhccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCC
Q 005504 433 RAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPN 501 (693)
Q Consensus 433 ~~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~ 501 (693)
+. ..+..+++.+|++++|+|++++...+...++..+...++|+++|+||+|+...
T Consensus 86 f~--------------~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 86 FT--------------GEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGA 140 (687)
T ss_pred HH--------------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCC
Confidence 42 23456789999999999999999888888888888899999999999998753
No 445
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.56 E-value=2.3e-14 Score=131.77 Aligned_cols=155 Identities=23% Similarity=0.166 Sum_probs=111.4
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCcee-cCCCCcccceEEEEEeCCCCC--eEEEEeCccccchhhhccCCChhhHhHH
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIV-SPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSV 448 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v-~~~~gtT~d~~~~~~~~~~g~--~i~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (693)
+++.+||.+-||||+|+..+...+.... .+..|+..-... +.+..|. +++||||+|+++|.++.
T Consensus 9 frlivigdstvgkssll~~ft~gkfaelsdptvgvdffarl--ie~~pg~riklqlwdtagqerfrsit----------- 75 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARL--IELRPGYRIKLQLWDTAGQERFRSIT----------- 75 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHH--HhcCCCcEEEEEEeeccchHHHHHHH-----------
Confidence 6899999999999999999986544433 334444433333 3333454 78999999999986653
Q ss_pred HHHHHHHhcCCeEEEEecccccCCHHHHH-HHHHHHHh-----CCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCC
Q 005504 449 NRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE-----GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD 522 (693)
Q Consensus 449 ~~~~~~i~~aDvvllViDa~~~~~~~d~~-~~~~l~~~-----~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~ 522 (693)
..+++++-.+++|+|.++..+.+... |+...... +.-+.+|+.|+||...... ..+-.+.|....
T Consensus 76 ---ksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqV------t~EEaEklAa~h 146 (213)
T KOG0091|consen 76 ---KSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQV------TAEEAEKLAASH 146 (213)
T ss_pred ---HHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccc------cHHHHHHHHHhc
Confidence 33789999999999999987777654 55554432 2336789999999754332 222334555555
Q ss_pred CCcEEEeccccCCCHHHHHHHHHHHH
Q 005504 523 WAPIVYSTAIAGQSVDKIIVAAEMVD 548 (693)
Q Consensus 523 ~~piv~iSA~~g~gv~~L~~~i~~~~ 548 (693)
+..+|++||++|.||++.|..+.+..
T Consensus 147 gM~FVETSak~g~NVeEAF~mlaqeI 172 (213)
T KOG0091|consen 147 GMAFVETSAKNGCNVEEAFDMLAQEI 172 (213)
T ss_pred CceEEEecccCCCcHHHHHHHHHHHH
Confidence 78999999999999999999987653
No 446
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.55 E-value=1.9e-14 Score=144.48 Aligned_cols=163 Identities=18% Similarity=0.184 Sum_probs=124.0
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhcccC
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (693)
-.|.++|.+|+|||||+|+|.+.+...++..+.+|....+....+++..++||||||+++....+.
T Consensus 40 vnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~-------------- 105 (296)
T COG3596 40 VNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDA-------------- 105 (296)
T ss_pred eeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhH--------------
Confidence 367799999999999999999887777877776676666666678889999999999997443332
Q ss_pred CCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCccch----
Q 005504 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKG---- 319 (693)
Q Consensus 244 ~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~---- 319 (693)
..+......+...|++|+++|+.++.-..|..+++-+.-...++++++|+|.+|.....
T Consensus 106 -----------------~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~ 168 (296)
T COG3596 106 -----------------EHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWD 168 (296)
T ss_pred -----------------HHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccc
Confidence 12455678888999999999999988888888777766555679999999999975431
Q ss_pred ---------hhhHH--------HHHhcCCCCccccccCCCCHHHHHHHHHhhccc
Q 005504 320 ---------IMQVS--------EFWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (693)
Q Consensus 320 ---------~~~~~--------~~~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l~~ 357 (693)
..+.. .+.+.-.+++.+|+..+.|++.|...++..++.
T Consensus 169 ~~~~~p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 169 SAGHQPSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence 01111 112222256777789999999999999998873
No 447
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.55 E-value=4e-14 Score=157.57 Aligned_cols=145 Identities=25% Similarity=0.224 Sum_probs=102.8
Q ss_pred CCeEEEEcCCCCChhhHHHHhhcCceee------------------------------ecCCCCceeeeEEEEEEecCee
Q 005504 163 LPRVAIVGRPNVGKSALFNRLVGGNRAI------------------------------VVDEPGVTRDRMYGRSFWGEHE 212 (693)
Q Consensus 163 ~~~V~ivG~~nvGKSsL~n~l~~~~~~~------------------------------v~~~~~~T~~~~~~~~~~~~~~ 212 (693)
..+|+++||+|+|||||+++|+.....+ .....|+|.+.....+.+++..
T Consensus 7 ~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~~ 86 (426)
T TIGR00483 7 HINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKYE 86 (426)
T ss_pred eeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCeE
Confidence 3579999999999999999998421111 1124589999999888999999
Q ss_pred EEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCC---CCHH
Q 005504 213 FMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG---LTAA 289 (693)
Q Consensus 213 ~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~---~~~~ 289 (693)
+.+|||||+..+ .+.+..++..+|++++|+|++++ ...+
T Consensus 87 i~iiDtpGh~~f--------------------------------------~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~ 128 (426)
T TIGR00483 87 VTIVDCPGHRDF--------------------------------------IKNMITGASQADAAVLVVAVGDGEFEVQPQ 128 (426)
T ss_pred EEEEECCCHHHH--------------------------------------HHHHHhhhhhCCEEEEEEECCCCCcccCCc
Confidence 999999998531 13344567889999999999988 4444
Q ss_pred HHHHHHHHHhhcCCCcEEEEecccCCccchh-------hhHHHHH-hcC-----CCCccccccCCCCHHH
Q 005504 290 DEEIADWLRKNYMDKFIILAVNKCESPRKGI-------MQVSEFW-SLG-----FSPLPISAISGTGTGE 346 (693)
Q Consensus 290 d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~~-------~~~~~~~-~~g-----~~~v~iSA~~g~gi~~ 346 (693)
..+.+.+++.. ...|+|+|+||+|+..... .....+. ..+ .+++++||.+|.|+.+
T Consensus 129 t~~~~~~~~~~-~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 129 TREHAFLARTL-GINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred hHHHHHHHHHc-CCCeEEEEEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 44444444432 2357999999999864211 1111222 234 3579999999999975
No 448
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.55 E-value=9.6e-14 Score=144.42 Aligned_cols=116 Identities=20% Similarity=0.249 Sum_probs=87.5
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceee-----e----------cCCC------CceeeeEEEEEEecCeeEEEEecCCcc
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAI-----V----------VDEP------GVTRDRMYGRSFWGEHEFMLVDTGGVL 222 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~-----v----------~~~~------~~T~~~~~~~~~~~~~~~~lvDTpG~~ 222 (693)
..|+|+||+|+|||||+++|+.....+ + .++. +.|.......+.|++..+.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 579999999999999999998532111 1 1111 233334445778999999999999986
Q ss_pred cccCCchhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcC
Q 005504 223 NVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYM 302 (693)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~ 302 (693)
++ ...+..+++.+|++++|+|+..++..+...+++++.. .
T Consensus 83 df--------------------------------------~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~--~ 122 (267)
T cd04169 83 DF--------------------------------------SEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRL--R 122 (267)
T ss_pred HH--------------------------------------HHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHh--c
Confidence 41 1334567889999999999999988877777777765 4
Q ss_pred CCcEEEEecccCCccch
Q 005504 303 DKFIILAVNKCESPRKG 319 (693)
Q Consensus 303 ~~p~ivv~NK~D~~~~~ 319 (693)
++|+++++||+|+....
T Consensus 123 ~~P~iivvNK~D~~~a~ 139 (267)
T cd04169 123 GIPIITFINKLDREGRD 139 (267)
T ss_pred CCCEEEEEECCccCCCC
Confidence 78999999999986543
No 449
>PTZ00258 GTP-binding protein; Provisional
Probab=99.55 E-value=1.4e-13 Score=148.71 Aligned_cols=92 Identities=28% Similarity=0.322 Sum_probs=74.6
Q ss_pred cCCcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCC----------------CeEEEEeCccccc
Q 005504 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG----------------QKFRLIDTAGIRK 432 (693)
Q Consensus 369 ~~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g----------------~~i~liDTpG~~~ 432 (693)
....+|+|||.||||||||+|+|.+.. ..++++|+||+++..+.+...+. ..+.++||||+.+
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~-~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQ-VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCc-ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 445799999999999999999998775 68999999999999888765332 2589999999975
Q ss_pred hhhhccCCChhhHhHHHHHHHHHhcCCeEEEEeccc
Q 005504 433 RAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAM 468 (693)
Q Consensus 433 ~~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~ 468 (693)
... .......+++.+++.||++++|+|+.
T Consensus 98 ga~-------~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 98 GAS-------EGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCc-------chhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 322 22334568889999999999999984
No 450
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.54 E-value=2.5e-14 Score=151.84 Aligned_cols=159 Identities=19% Similarity=0.218 Sum_probs=121.8
Q ss_pred CCcEEEeecCCCCChhhHHHHHhcCCCc--------------eecCCCCcccceEEEEEeCC--CC--CeEEEEeCcccc
Q 005504 370 RIPAIAIVGRPNVGKSSILNALVGEDRT--------------IVSPISGTTRDAIDTEFTGP--EG--QKFRLIDTAGIR 431 (693)
Q Consensus 370 ~~~~I~ivG~~n~GKSSLin~llg~~~~--------------~v~~~~gtT~d~~~~~~~~~--~g--~~i~liDTpG~~ 431 (693)
+.++.+|+.+-..|||||..+|+..... ...-..|.|+....+.+.+. +| ..+.|||||||.
T Consensus 8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHV 87 (603)
T COG0481 8 NIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 87 (603)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCcc
Confidence 4578999999999999999999853221 23344589988777666542 33 368899999999
Q ss_pred chhhhccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHH
Q 005504 432 KRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYE 511 (693)
Q Consensus 432 ~~~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~ 511 (693)
+|.- ...+++..|..+++|+||++|+..|...-..+..+.+.-+|-|+||+||...+... +.
T Consensus 88 DFsY--------------EVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adper----vk 149 (603)
T COG0481 88 DFSY--------------EVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPER----VK 149 (603)
T ss_pred ceEE--------------EehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCCHHH----HH
Confidence 9843 22346778999999999999999999988888899999999999999997654333 34
Q ss_pred HHHHHHHhcCCCCcEEEeccccCCCHHHHHHHHHHH
Q 005504 512 QDVREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMV 547 (693)
Q Consensus 512 ~~i~~~l~~~~~~piv~iSA~~g~gv~~L~~~i~~~ 547 (693)
+++.+.+. +.....+.+|||+|.|+++++++|.+.
T Consensus 150 ~eIe~~iG-id~~dav~~SAKtG~gI~~iLe~Iv~~ 184 (603)
T COG0481 150 QEIEDIIG-IDASDAVLVSAKTGIGIEDVLEAIVEK 184 (603)
T ss_pred HHHHHHhC-CCcchheeEecccCCCHHHHHHHHHhh
Confidence 45544433 223468999999999999999888753
No 451
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.54 E-value=6.7e-14 Score=139.08 Aligned_cols=150 Identities=17% Similarity=0.097 Sum_probs=95.9
Q ss_pred CeEEEEcCCCCChhhHHH-HhhcCce---eeecCCCCcee--eeEEEE--------EEecC--eeEEEEecCCcccccCC
Q 005504 164 PRVAIVGRPNVGKSALFN-RLVGGNR---AIVVDEPGVTR--DRMYGR--------SFWGE--HEFMLVDTGGVLNVSKS 227 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n-~l~~~~~---~~v~~~~~~T~--~~~~~~--------~~~~~--~~~~lvDTpG~~~~~~~ 227 (693)
.+|+++|.+|||||||+. ++.+... .....+..+.. +..... ..++| ..+.+|||+|.... .
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--~ 80 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--D 80 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--h
Confidence 479999999999999996 5544321 01112222211 111111 12344 56899999998531 0
Q ss_pred chhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH--HHHHHHHhhcCCCc
Q 005504 228 QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKF 305 (693)
Q Consensus 228 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~--~i~~~L~~~~~~~p 305 (693)
...+++.+|++|+|+|..+..+.... .+.+.+++...+.|
T Consensus 81 --------------------------------------~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~p 122 (195)
T cd01873 81 --------------------------------------RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVP 122 (195)
T ss_pred --------------------------------------hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCC
Confidence 01246789999999999877655443 24455555434789
Q ss_pred EEEEecccCCccc-------------------hhh---hHHH-HHhcCCCCccccccCCCCHHHHHHHHHh
Q 005504 306 IILAVNKCESPRK-------------------GIM---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCS 353 (693)
Q Consensus 306 ~ivv~NK~D~~~~-------------------~~~---~~~~-~~~~g~~~v~iSA~~g~gi~~Ll~~i~~ 353 (693)
+++|+||+|+... ... .... ....|..++++||++|.|++++++.+.+
T Consensus 123 iilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 123 VILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred EEEEEEchhccccccchhhhcccccccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 9999999998531 111 1111 2345678899999999999999998875
No 452
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.54 E-value=1e-13 Score=151.44 Aligned_cols=89 Identities=30% Similarity=0.322 Sum_probs=69.9
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeC--------------------CCC---CeEEEEeCc
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTG--------------------PEG---QKFRLIDTA 428 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~--------------------~~g---~~i~liDTp 428 (693)
++|+|+|.||||||||+|+|++.. ..+++++++|+++..+.... .++ ..+.+||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~-~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLAD-VEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc-ccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 589999999999999999999875 46789999999988765331 112 468899999
Q ss_pred cccchhhhccCCChhhHhHHHHHHHHHhcCCeEEEEeccc
Q 005504 429 GIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAM 468 (693)
Q Consensus 429 G~~~~~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~ 468 (693)
|+.+... .......+++.+++.||++++|+|+.
T Consensus 81 Gl~~ga~-------~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 81 GLVPGAH-------EGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred CcCCCcc-------chhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 9865321 12234567888999999999999996
No 453
>PRK00007 elongation factor G; Reviewed
Probab=99.54 E-value=2.7e-14 Score=167.57 Aligned_cols=140 Identities=22% Similarity=0.279 Sum_probs=107.9
Q ss_pred CCCeEEEEcCCCCChhhHHHHhhc---Ccee--eec------------CCCCceeeeEEEEEEecCeeEEEEecCCcccc
Q 005504 162 LLPRVAIVGRPNVGKSALFNRLVG---GNRA--IVV------------DEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNV 224 (693)
Q Consensus 162 ~~~~V~ivG~~nvGKSsL~n~l~~---~~~~--~v~------------~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~ 224 (693)
...+|+|+||+|+|||||+|+|+. .... .+. ...|+|.+.....+.|.+..+.++||||+.++
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f 88 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF 88 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH
Confidence 356899999999999999999973 2111 122 35689999988899999999999999998541
Q ss_pred cCCchhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCC
Q 005504 225 SKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDK 304 (693)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~ 304 (693)
...+.+++..+|++++|+|+..|+..++..++.++.+ .++
T Consensus 89 --------------------------------------~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~--~~~ 128 (693)
T PRK00007 89 --------------------------------------TIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADK--YKV 128 (693)
T ss_pred --------------------------------------HHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHH--cCC
Confidence 1235688899999999999999999999999999988 588
Q ss_pred cEEEEecccCCccchhhhHHHHH--hcCC----CCccccccCC
Q 005504 305 FIILAVNKCESPRKGIMQVSEFW--SLGF----SPLPISAISG 341 (693)
Q Consensus 305 p~ivv~NK~D~~~~~~~~~~~~~--~~g~----~~v~iSA~~g 341 (693)
|+|+++||+|+.........+.. .+++ ..+|+||..+
T Consensus 129 p~iv~vNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ipisa~~~ 171 (693)
T PRK00007 129 PRIAFVNKMDRTGADFYRVVEQIKDRLGANPVPIQLPIGAEDD 171 (693)
T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHhCCCeeeEEecCccCCc
Confidence 99999999999864432222211 2232 3578888776
No 454
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.54 E-value=6e-15 Score=130.88 Aligned_cols=156 Identities=20% Similarity=0.225 Sum_probs=107.6
Q ss_pred EeecCCCCChhhHHHHHhcCCCceecC-CCCcccceEEEEEeCC-CCCeEEEEeCccccchhhhccCCChhhHhHHHHHH
Q 005504 375 AIVGRPNVGKSSILNALVGEDRTIVSP-ISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (693)
Q Consensus 375 ~ivG~~n~GKSSLin~llg~~~~~v~~-~~gtT~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~~ 452 (693)
+++|.+++|||.|+-++-... +...+ +..+.+|.....+... ...++++|||+|+++|.++. .
T Consensus 1 mllgds~~gktcllir~kdga-fl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt--------------~ 65 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGA-FLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVT--------------H 65 (192)
T ss_pred CccccCccCceEEEEEeccCc-eecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhh--------------H
Confidence 368999999999987664322 11221 1122233333333321 23478999999999986643 3
Q ss_pred HHHhcCCeEEEEecccccCCHHHH-HHHHHHHHhC---CcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcEEE
Q 005504 453 RAIRRSDVVALVIEAMACITEQDC-RIAERIEQEG---KGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVY 528 (693)
Q Consensus 453 ~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~~~---~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~piv~ 528 (693)
.+++.+|.+++++|..+..+..+. .|+.++.+.+ +.+.++.||+|+.+..... .+-.+.+....++|+++
T Consensus 66 ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~------~ddg~kla~~y~ipfme 139 (192)
T KOG0083|consen 66 AYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVK------RDDGEKLAEAYGIPFME 139 (192)
T ss_pred hhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccc------cchHHHHHHHHCCCcee
Confidence 478999999999999988777664 5888888764 5789999999996543221 12234444445799999
Q ss_pred eccccCCCHHHHHHHHHHHHHHh
Q 005504 529 STAIAGQSVDKIIVAAEMVDKER 551 (693)
Q Consensus 529 iSA~~g~gv~~L~~~i~~~~~~~ 551 (693)
+||++|.||+..|-.|.+-.++.
T Consensus 140 tsaktg~nvd~af~~ia~~l~k~ 162 (192)
T KOG0083|consen 140 TSAKTGFNVDLAFLAIAEELKKL 162 (192)
T ss_pred ccccccccHhHHHHHHHHHHHHh
Confidence 99999999999998887665543
No 455
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.53 E-value=1.2e-13 Score=136.20 Aligned_cols=153 Identities=15% Similarity=0.158 Sum_probs=100.0
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (693)
+|+|+|.+|+|||||++++...... .....+..+.....+.+.+ ..+.+|||||........
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~-------------- 66 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEFP--EEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLR-------------- 66 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--cccCCcccceEEEEEEECCEEEEEEEEECCCChhccccc--------------
Confidence 6999999999999999999855421 1222222233333445555 347899999986422110
Q ss_pred CCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH--HHHHHHHhhcCCCcEEEEecccCCccch-
Q 005504 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKG- 319 (693)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~--~i~~~L~~~~~~~p~ivv~NK~D~~~~~- 319 (693)
...+..+|++++|+|..+.-+.... .+...+++...+.|+++|+||+|+....
T Consensus 67 ------------------------~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~ 122 (187)
T cd04129 67 ------------------------PLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAV 122 (187)
T ss_pred ------------------------hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcc
Confidence 0235778999999998765443332 2455555444578999999999985311
Q ss_pred ---------hh---hHHHH-HhcCC-CCccccccCCCCHHHHHHHHHhhccc
Q 005504 320 ---------IM---QVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSELKK 357 (693)
Q Consensus 320 ---------~~---~~~~~-~~~g~-~~v~iSA~~g~gi~~Ll~~i~~~l~~ 357 (693)
.. ....+ ...+. .++++||++|.|++++++.+.+.+-.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 174 (187)
T cd04129 123 AKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAATRAALL 174 (187)
T ss_pred cccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHHHHHhc
Confidence 00 11111 23454 68999999999999999999876543
No 456
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=8.5e-14 Score=125.83 Aligned_cols=157 Identities=17% Similarity=0.158 Sum_probs=104.9
Q ss_pred CcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEE-EEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAID-TEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 371 ~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~-~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
.+|+.++|.+.+|||||+-+.++.... ..-+....+|... ..+....-.++++|||+|+++...+
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt-~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrti------------- 86 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFT-SAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTI------------- 86 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccc-cceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHH-------------
Confidence 369999999999999999999986422 2222222233222 2222212247899999999774333
Q ss_pred HHHHHHhcCCeEEEEecccccCCHHHHH-HHHHHH---HhCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCc
Q 005504 450 RAFRAIRRSDVVALVIEAMACITEQDCR-IAERIE---QEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~~~~~~d~~-~~~~l~---~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~p 525 (693)
+-.++++|+.+|+++|.++..+....+ |+..+. ..+.|+|+|.||||+-..+- ...+. -..+.+.| +..
T Consensus 87 -TTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRv-is~e~-g~~l~~~L----Gfe 159 (193)
T KOG0093|consen 87 -TTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERV-ISHER-GRQLADQL----GFE 159 (193)
T ss_pred -HHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCcccee-eeHHH-HHHHHHHh----ChH
Confidence 233789999999999998864444332 444443 34899999999999955432 22111 12222333 348
Q ss_pred EEEeccccCCCHHHHHHHHHHHH
Q 005504 526 IVYSTAIAGQSVDKIIVAAEMVD 548 (693)
Q Consensus 526 iv~iSA~~g~gv~~L~~~i~~~~ 548 (693)
++++|||.+.||+++|+.+....
T Consensus 160 fFEtSaK~NinVk~~Fe~lv~~I 182 (193)
T KOG0093|consen 160 FFETSAKENINVKQVFERLVDII 182 (193)
T ss_pred HhhhcccccccHHHHHHHHHHHH
Confidence 99999999999999999987653
No 457
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.53 E-value=1.8e-13 Score=138.17 Aligned_cols=156 Identities=15% Similarity=0.079 Sum_probs=101.1
Q ss_pred CCcEEEeecCCCCChhhHHHHHhcCC-CceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHH
Q 005504 370 RIPAIAIVGRPNVGKSSILNALVGED-RTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (693)
Q Consensus 370 ~~~~I~ivG~~n~GKSSLin~llg~~-~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (693)
..+||+++|.+|||||||+++++... .....+..|........... .+...+.+|||+|..++..+.
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~i~i~~~Dt~g~~~~~~~~----------- 75 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTN-CGPICFNVWDTAGQEKFGGLR----------- 75 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEEC-CeEEEEEEEECCCchhhhhhh-----------
Confidence 34799999999999999998766432 22223333333322222222 134588999999986643221
Q ss_pred HHHHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHH--hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCc
Q 005504 449 NRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ--EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (693)
Q Consensus 449 ~~~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~--~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~p 525 (693)
...+..+|++++|+|.++..+.++. .|+..+.. .+.|+++|+||+|+.+... ..+ .. . .. ...+..
T Consensus 76 ---~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~--~~~-~~-~---~~-~~~~~~ 144 (215)
T PTZ00132 76 ---DGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQV--KAR-QI-T---FH-RKKNLQ 144 (215)
T ss_pred ---HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccC--CHH-HH-H---HH-HHcCCE
Confidence 2356789999999999887665554 34444433 3689999999999854221 111 11 1 11 122467
Q ss_pred EEEeccccCCCHHHHHHHHHHHH
Q 005504 526 IVYSTAIAGQSVDKIIVAAEMVD 548 (693)
Q Consensus 526 iv~iSA~~g~gv~~L~~~i~~~~ 548 (693)
++++||++|.|++++|..+.+..
T Consensus 145 ~~e~Sa~~~~~v~~~f~~ia~~l 167 (215)
T PTZ00132 145 YYDISAKSNYNFEKPFLWLARRL 167 (215)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998887654
No 458
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=4.5e-14 Score=141.66 Aligned_cols=296 Identities=16% Similarity=0.199 Sum_probs=199.2
Q ss_pred ccCCcEEEeecCCCCChhhHHHHHhcCCC-------c---eec-----CCCCcccceEEEEEeCCCCCeEEEEeCccccc
Q 005504 368 ENRIPAIAIVGRPNVGKSSILNALVGEDR-------T---IVS-----PISGTTRDAIDTEFTGPEGQKFRLIDTAGIRK 432 (693)
Q Consensus 368 ~~~~~~I~ivG~~n~GKSSLin~llg~~~-------~---~v~-----~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~ 432 (693)
.....+|+.||+-+.|||||..+|.+.-. . ... ...|.|+......+.. ..+.|-.+|.||+.+
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet-~~rhyahVDcPGHaD 87 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHAD 87 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEec-CCceEEeccCCChHH
Confidence 34557999999999999999998874210 0 011 2239999998888886 788999999999865
Q ss_pred hhhhccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCc-EEEEEeccCCCCCcchhhHHHHH
Q 005504 433 RAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKG-CLIVVNKWDTIPNKNQQTATYYE 511 (693)
Q Consensus 433 ~~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p-~Ivv~NK~Dl~~~~~~~~~~~~~ 511 (693)
. ++.++....+.|.+|||+.|.+|..+|.++.+-+.+..|.| +++++||+|+++.. +..+.+.
T Consensus 88 Y--------------vKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~--ellelVe 151 (394)
T COG0050 88 Y--------------VKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDE--ELLELVE 151 (394)
T ss_pred H--------------HHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcH--HHHHHHH
Confidence 3 56777777899999999999999999999988888889997 55667999998743 4556677
Q ss_pred HHHHHHHhcCCC----CcEEEeccccC-CC-------HHHHHHHHHHHHHHhhccCCchhHHHHHHhHhhccCCCC----
Q 005504 512 QDVREKLRALDW----APIVYSTAIAG-QS-------VDKIIVAAEMVDKERSRRLSTATINQVVQEAVAFKSPPR---- 575 (693)
Q Consensus 512 ~~i~~~l~~~~~----~piv~iSA~~g-~g-------v~~L~~~i~~~~~~~~~~i~t~~ln~~l~~~~~~~~~p~---- 575 (693)
.++++.|..+++ .|++.-||+.- .| +.+|++++........+......|- -+++......--.
T Consensus 152 mEvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per~~dkPflm-pvEdvfsIsgrgtvvtG 230 (394)
T COG0050 152 MEVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPERDIDKPFLM-PVEDVFSISGRGTVVTG 230 (394)
T ss_pred HHHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCCcccccccc-cceeeEEEcCceeEEEE
Confidence 788888877654 68998888752 22 4555555554433322222111000 0011100000000
Q ss_pred --------------CCCCcceeEEEEEecccchhhhhhhccCCCCcch---------hhhhhhhccCCCCEEEEEeCCCC
Q 005504 576 --------------TRGGRRGRVYYCTQLLLGIFVRSAFRYGALGPLH---------IKYDLLQAAVRPPTFVFFVNDAK 632 (693)
Q Consensus 576 --------------~~~~~~~k~~y~~q~~~~~~~r~~~~~~~~~~~~---------~~~~~l~~~~~pp~~v~~~n~~~ 632 (693)
..+.+..+-.-+|= + .|.|.+||-+-..+=+ +..+.-|+..+|.++. .+.+
T Consensus 231 rVeRG~lkvg~eveivG~~~~~kttvtg--v-emfrk~ld~~~AGdnvg~llRg~~r~~veRGqvLakpgsi~---ph~k 304 (394)
T COG0050 231 RVERGILKVGEEVEIVGIKETQKTTVTG--V-EMFRKLLDEGQAGDNVGVLLRGVKREDVERGQVLAKPGSIK---PHTK 304 (394)
T ss_pred EEeeeeeccCCEEEEecccccceeEEEh--H-HHHHHHHhccccCCCcceEEEeccccceecceEeecCCccc---ccce
Confidence 00111111111221 1 3456666655443321 2346667888888876 6667
Q ss_pred CCChHHHHHHHHHHhhhcCCCCccEEEEEeecCccccccccccchhccccCcCCcccc
Q 005504 633 LFPETYRRYMEKQLRADAGFSGTPIRLLWRSRRKMEMKEGKSASRTQANLVPRDRKVA 690 (693)
Q Consensus 633 ~~~~~y~~~l~~~~r~~~~~~g~pi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i 690 (693)
.-.++|..--+..-|+.-.|.|..-+++||...-....+..+|. ++++|||+|=+
T Consensus 305 feaevyvL~keeggrhtpff~~yrpqfyfRttDVtg~i~l~eg~---emvmpgdnv~~ 359 (394)
T COG0050 305 FEAEVYVLSKEEGGRHTPFFHGYRPQFYFRTTDVTGAITLPEGV---EMVMPGDNVKM 359 (394)
T ss_pred eeEEEEEEecccCCCCCCcccCccceeEEEeeeeeeeEeccCCc---ceecCCCceEE
Confidence 77888888888899999999999999999988776677777776 99999999844
No 459
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.53 E-value=7.7e-14 Score=147.88 Aligned_cols=166 Identities=18% Similarity=0.229 Sum_probs=118.9
Q ss_pred ccCCcEEEeecCCCCChhhHHHHHhcC----CCc-----------eecCCCC---cccceEE---EEEeCCCC----CeE
Q 005504 368 ENRIPAIAIVGRPNVGKSSILNALVGE----DRT-----------IVSPISG---TTRDAID---TEFTGPEG----QKF 422 (693)
Q Consensus 368 ~~~~~~I~ivG~~n~GKSSLin~llg~----~~~-----------~v~~~~g---tT~d~~~---~~~~~~~g----~~i 422 (693)
....+.|+++|+.|+|||||+|+|.+. +.. .+++.+| ||.+++. ..+...-. .++
T Consensus 14 T~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~V 93 (492)
T TIGR02836 14 TQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKV 93 (492)
T ss_pred hCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccE
Confidence 345589999999999999999999998 666 7899999 9999887 32322122 589
Q ss_pred EEEeCccccchhhhccCCChhhHhHHHH----------------------HHHHHh-cCCeEEEEe-ccc------ccCC
Q 005504 423 RLIDTAGIRKRAAIASSGSTTEALSVNR----------------------AFRAIR-RSDVVALVI-EAM------ACIT 472 (693)
Q Consensus 423 ~liDTpG~~~~~~~~~~~~~~e~~~~~~----------------------~~~~i~-~aDvvllVi-Da~------~~~~ 472 (693)
.++||+|+...+.+. +....+ +.+.+. .+|+.|+|. |++ +...
T Consensus 94 rlIDcvG~~v~GalG-------~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~ 166 (492)
T TIGR02836 94 RLVDCVGYTVKGALG-------YMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYV 166 (492)
T ss_pred EEEECCCcccCCCcc-------ceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccch
Confidence 999999998865443 222233 777887 999999999 885 4567
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCCcEEEeccccCCCHHHHHHHHHHHHH
Q 005504 473 EQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVDK 549 (693)
Q Consensus 473 ~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~piv~iSA~~g~gv~~L~~~i~~~~~ 549 (693)
+.+.+++..+.+.++|+|+|+||+|-...... .+.+.+.+. ...|++++|+.. -.-+++...+.+++.
T Consensus 167 ~aEe~~i~eLk~~~kPfiivlN~~dp~~~et~----~l~~~l~ek----y~vpvl~v~c~~-l~~~DI~~il~~vL~ 234 (492)
T TIGR02836 167 EAEERVIEELKELNKPFIILLNSTHPYHPETE----ALRQELEEK----YDVPVLAMDVES-MRESDILSVLEEVLY 234 (492)
T ss_pred HHHHHHHHHHHhcCCCEEEEEECcCCCCchhH----HHHHHHHHH----hCCceEEEEHHH-cCHHHHHHHHHHHHh
Confidence 88889999999999999999999994322211 122233222 247889988754 334455555555543
No 460
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.53 E-value=1e-13 Score=132.98 Aligned_cols=144 Identities=17% Similarity=0.207 Sum_probs=97.9
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (693)
+|+++|.+|||||||+.+++.... ...++. +.......+.++| ..+.+|||+|... .
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f--~~~~~~-~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~------------- 60 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSY--VQLESP-EGGRFKKEVLVDGQSHLLLIRDEGGAPD-----A------------- 60 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCC--CCCCCC-CccceEEEEEECCEEEEEEEEECCCCCc-----h-------------
Confidence 689999999999999999886542 122222 2222234556777 4588999999853 0
Q ss_pred CCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHH-HHHHHHHHhhc--CCCcEEEEecccCCccc-
Q 005504 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY--MDKFIILAVNKCESPRK- 318 (693)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d-~~i~~~L~~~~--~~~p~ivv~NK~D~~~~- 318 (693)
.+++.+|++++|+|.++.-+.+. ..+...+.... .+.|+++|+||+|+...
T Consensus 61 -------------------------~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~ 115 (158)
T cd04103 61 -------------------------QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESN 115 (158)
T ss_pred -------------------------hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcC
Confidence 23467899999999998766655 23444444321 45799999999997421
Q ss_pred -hhhh---HHHHH-hc-CCCCccccccCCCCHHHHHHHHHhh
Q 005504 319 -GIMQ---VSEFW-SL-GFSPLPISAISGTGTGELLDLVCSE 354 (693)
Q Consensus 319 -~~~~---~~~~~-~~-g~~~v~iSA~~g~gi~~Ll~~i~~~ 354 (693)
.... ...+. .. +..++++||++|.|++++++.+.+.
T Consensus 116 ~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 116 PRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred CcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence 1111 11222 22 3678999999999999999988754
No 461
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=1.2e-13 Score=125.51 Aligned_cols=157 Identities=15% Similarity=0.153 Sum_probs=109.4
Q ss_pred CCcEEEeecCCCCChhhHHHHHhcCCCc-eecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHH
Q 005504 370 RIPAIAIVGRPNVGKSSILNALVGEDRT-IVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (693)
Q Consensus 370 ~~~~I~ivG~~n~GKSSLin~llg~~~~-~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (693)
..+|+.++|..|.|||.|+.+++..+.. .++...|+..-+....+-. +..++++|||+|+++|.++
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGg-K~vKLQIWDTAGQErFRSV------------ 74 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGG-KTVKLQIWDTAGQERFRSV------------ 74 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecC-cEEEEEEeecccHHHHHHH------------
Confidence 3579999999999999999999854321 2444445444433333321 3348999999999887554
Q ss_pred HHHHHHHhcCCeEEEEecccccCCHHHHH-HHHHHHH---hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005504 449 NRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (693)
Q Consensus 449 ~~~~~~i~~aDvvllViDa~~~~~~~d~~-~~~~l~~---~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~ 524 (693)
+..+++.|-.+++|+|++...+...+. |+.-++. .++-+|++.||.||.+..+.... -...|......
T Consensus 75 --tRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~Vtfl------EAs~FaqEnel 146 (214)
T KOG0086|consen 75 --TRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFL------EASRFAQENEL 146 (214)
T ss_pred --HHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHH------HHHhhhcccce
Confidence 344789999999999999876666553 5554443 36778899999999654332211 11234444456
Q ss_pred cEEEeccccCCCHHHHHHHHHHH
Q 005504 525 PIVYSTAIAGQSVDKIIVAAEMV 547 (693)
Q Consensus 525 piv~iSA~~g~gv~~L~~~i~~~ 547 (693)
-+.++||++|.||++.|-.+.+.
T Consensus 147 ~flETSa~TGeNVEEaFl~c~~t 169 (214)
T KOG0086|consen 147 MFLETSALTGENVEEAFLKCART 169 (214)
T ss_pred eeeeecccccccHHHHHHHHHHH
Confidence 78899999999999988776654
No 462
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.53 E-value=1.1e-13 Score=139.42 Aligned_cols=112 Identities=24% Similarity=0.296 Sum_probs=81.1
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeee------------------cCCCCceeeeEEEEEEec-----CeeEEEEecCCc
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIV------------------VDEPGVTRDRMYGRSFWG-----EHEFMLVDTGGV 221 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v------------------~~~~~~T~~~~~~~~~~~-----~~~~~lvDTpG~ 221 (693)
+|+|+|++|+|||||+++|++...... ....|+|.+.....+.+. ...+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 589999999999999999986532211 011234443333333332 367999999998
Q ss_pred ccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhc
Q 005504 222 LNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY 301 (693)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~ 301 (693)
.++ ...+..++..+|++++|+|+.++....+..+++.+..
T Consensus 82 ~~f--------------------------------------~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~-- 121 (213)
T cd04167 82 VNF--------------------------------------MDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAIL-- 121 (213)
T ss_pred cch--------------------------------------HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH--
Confidence 652 1345577889999999999999888777676666655
Q ss_pred CCCcEEEEecccCCc
Q 005504 302 MDKFIILAVNKCESP 316 (693)
Q Consensus 302 ~~~p~ivv~NK~D~~ 316 (693)
.++|+++|+||+|+.
T Consensus 122 ~~~p~iiviNK~D~~ 136 (213)
T cd04167 122 EGLPIVLVINKIDRL 136 (213)
T ss_pred cCCCEEEEEECcccC
Confidence 368999999999975
No 463
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.53 E-value=1.7e-13 Score=138.55 Aligned_cols=150 Identities=14% Similarity=0.075 Sum_probs=99.2
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecC--eeEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~--~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (693)
+|++||.+|||||+|++++.+.. . ...+.++..+.....+.+++ ..+.+|||+|...+.
T Consensus 3 KIvvvGd~~vGKTsLi~~~~~~~-f-~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~----------------- 63 (222)
T cd04173 3 KIVVVGDAECGKTALLQVFAKDA-Y-PGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYD----------------- 63 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC-C-CCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHH-----------------
Confidence 69999999999999999999865 2 22333222222223445555 457889999985421
Q ss_pred CCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH--HHHHHHHhhcCCCcEEEEecccCCccchh
Q 005504 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKGI 320 (693)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~--~i~~~L~~~~~~~p~ivv~NK~D~~~~~~ 320 (693)
.....++..+|++|+|+|..+..+.... .+...++....+.|+|+|+||+|+.....
T Consensus 64 ---------------------~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~ 122 (222)
T cd04173 64 ---------------------NVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLA 122 (222)
T ss_pred ---------------------HHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchh
Confidence 1222457899999999999876444332 23333444445789999999999864210
Q ss_pred ------------h---hHHHH-HhcCC-CCccccccCCCC-HHHHHHHHHhh
Q 005504 321 ------------M---QVSEF-WSLGF-SPLPISAISGTG-TGELLDLVCSE 354 (693)
Q Consensus 321 ------------~---~~~~~-~~~g~-~~v~iSA~~g~g-i~~Ll~~i~~~ 354 (693)
. ....+ ...|. .++++||+++.| +.++++.....
T Consensus 123 ~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~ 174 (222)
T cd04173 123 TLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVA 174 (222)
T ss_pred hhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHH
Confidence 0 11111 23454 689999999985 99999887664
No 464
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.52 E-value=1.3e-13 Score=147.33 Aligned_cols=195 Identities=19% Similarity=0.271 Sum_probs=134.9
Q ss_pred CCcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHH
Q 005504 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 370 ~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
....++++|.||||||||+|.+...+ ..+.+++.||.....+.+.+ +...++++||||+.+...-. .+.+| ....
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtrad-vevqpYaFTTksL~vGH~dy-kYlrwQViDTPGILD~plEd--rN~IE-mqsI 241 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRAD-DEVQPYAFTTKLLLVGHLDY-KYLRWQVIDTPGILDRPEED--RNIIE-MQII 241 (620)
T ss_pred CcCeEEEecCCCCCcHhhcccccccc-cccCCcccccchhhhhhhhh-heeeeeecCCccccCcchhh--hhHHH-HHHH
Confidence 34789999999999999999888664 56999999999988888875 67799999999998864322 12333 2333
Q ss_pred HHHHHHhcCCeEEEEecccc--cCCH-HHHHHHHHHHH--hCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005504 450 RAFRAIRRSDVVALVIEAMA--CITE-QDCRIAERIEQ--EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (693)
Q Consensus 450 ~~~~~i~~aDvvllViDa~~--~~~~-~d~~~~~~l~~--~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~ 524 (693)
.++.+++.| |+|++|.+. |.+- ++..+...+.. .++|+|+|+||+|+........ -.+++.+.+...+.+
T Consensus 242 TALAHLraa--VLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~---~~~~ll~~~~~~~~v 316 (620)
T KOG1490|consen 242 TALAHLRSA--VLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQ---KNQELLQTIIDDGNV 316 (620)
T ss_pred HHHHHhhhh--heeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCH---HHHHHHHHHHhccCc
Confidence 456667666 899999864 4443 34456666655 3899999999999987655432 233444555556678
Q ss_pred cEEEeccccCCCHHHHHHHH-HHHHHHh-hccCCchhHH-HHHHhHhhccCCC
Q 005504 525 PIVYSTAIAGQSVDKIIVAA-EMVDKER-SRRLSTATIN-QVVQEAVAFKSPP 574 (693)
Q Consensus 525 piv~iSA~~g~gv~~L~~~i-~~~~~~~-~~~i~t~~ln-~~l~~~~~~~~~p 574 (693)
+++.+|..+..||.++.... ...+.++ ..++.....+ ..+.......|.|
T Consensus 317 ~v~~tS~~~eegVm~Vrt~ACe~LLa~RVE~Klks~~~~n~vlnr~hvA~p~~ 369 (620)
T KOG1490|consen 317 KVVQTSCVQEEGVMDVRTTACEALLAARVEQKLKSESRVNNVLNRIHLAEPAA 369 (620)
T ss_pred eEEEecccchhceeeHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCc
Confidence 99999999999998877543 3333332 3455543433 5554444444444
No 465
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.52 E-value=1.9e-13 Score=145.26 Aligned_cols=158 Identities=22% Similarity=0.286 Sum_probs=118.1
Q ss_pred CCeEEEEcCCCCChhhHHHHhhcCcee--------------eecCCCCceeeeEEEEEEecC-----eeEEEEecCCccc
Q 005504 163 LPRVAIVGRPNVGKSALFNRLVGGNRA--------------IVVDEPGVTRDRMYGRSFWGE-----HEFMLVDTGGVLN 223 (693)
Q Consensus 163 ~~~V~ivG~~nvGKSsL~n~l~~~~~~--------------~v~~~~~~T~~~~~~~~~~~~-----~~~~lvDTpG~~~ 223 (693)
....+|+-|-+.|||||.++|+..... .+....|+|...+...+.|.. ..+.+|||||+.+
T Consensus 9 IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVD 88 (603)
T COG0481 9 IRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 88 (603)
T ss_pred ccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccc
Confidence 457889999999999999999754211 233456899998887776632 5688999999987
Q ss_pred ccCCchhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCC
Q 005504 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (693)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~ 303 (693)
++- .+.+.+..|..+|+|||++.|++.+...=.-..-. .+
T Consensus 89 FsY--------------------------------------EVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle--~~ 128 (603)
T COG0481 89 FSY--------------------------------------EVSRSLAACEGALLVVDASQGVEAQTLANVYLALE--NN 128 (603)
T ss_pred eEE--------------------------------------EehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH--cC
Confidence 542 23367788999999999999999876533222223 37
Q ss_pred CcEEEEecccCCccchhhhH-HHHHh-cCC---CCccccccCCCCHHHHHHHHHhhcccccC
Q 005504 304 KFIILAVNKCESPRKGIMQV-SEFWS-LGF---SPLPISAISGTGTGELLDLVCSELKKVEG 360 (693)
Q Consensus 304 ~p~ivv~NK~D~~~~~~~~~-~~~~~-~g~---~~v~iSA~~g~gi~~Ll~~i~~~l~~~~~ 360 (693)
.-+|.|+||+|++..+.... .+... .|+ ..+.+||++|.|++++++.|+..++....
T Consensus 129 LeIiPViNKIDLP~Adpervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g 190 (603)
T COG0481 129 LEIIPVLNKIDLPAADPERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKG 190 (603)
T ss_pred cEEEEeeecccCCCCCHHHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCCCC
Confidence 78999999999987654322 12221 344 47999999999999999999999997654
No 466
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.52 E-value=1.9e-13 Score=129.46 Aligned_cols=154 Identities=18% Similarity=0.166 Sum_probs=116.8
Q ss_pred CcEEEeecCCCCChhhHHHHHhcCCCcee-----cC-CCC---cccceEEEEEeCCCCCeEEEEeCccccchhhhccCCC
Q 005504 371 IPAIAIVGRPNVGKSSILNALVGEDRTIV-----SP-ISG---TTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGS 441 (693)
Q Consensus 371 ~~~I~ivG~~n~GKSSLin~llg~~~~~v-----~~-~~g---tT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~ 441 (693)
..+|+++|..++||||++.++..+....+ +. .-+ ||.-.-...+.+.++..+.|+|||||.||..+++
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~--- 86 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWE--- 86 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHH---
Confidence 36999999999999999999987654332 11 113 5554444556665568999999999999855441
Q ss_pred hhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhC-CcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhc
Q 005504 442 TTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEG-KGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRA 520 (693)
Q Consensus 442 ~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~-~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~ 520 (693)
-..+.++.+|+++|.+.+.+.....+++.+...+ .|++|++||.||......+ .+++.+..
T Consensus 87 -----------~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe-------~i~e~l~~ 148 (187)
T COG2229 87 -----------ILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPE-------KIREALKL 148 (187)
T ss_pred -----------HHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHH-------HHHHHHHh
Confidence 1357899999999999998887888999998887 9999999999997765433 23333333
Q ss_pred C-CCCcEEEeccccCCCHHHHHHHHH
Q 005504 521 L-DWAPIVYSTAIAGQSVDKIIVAAE 545 (693)
Q Consensus 521 ~-~~~piv~iSA~~g~gv~~L~~~i~ 545 (693)
. ...|+|.++|.+++++.+.++.+.
T Consensus 149 ~~~~~~vi~~~a~e~~~~~~~L~~ll 174 (187)
T COG2229 149 ELLSVPVIEIDATEGEGARDQLDVLL 174 (187)
T ss_pred ccCCCceeeeecccchhHHHHHHHHH
Confidence 3 368999999999999888777664
No 467
>PTZ00258 GTP-binding protein; Provisional
Probab=99.52 E-value=1.1e-13 Score=149.62 Aligned_cols=89 Identities=24% Similarity=0.228 Sum_probs=73.4
Q ss_pred CCeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCe-----------------eEEEEecCCccccc
Q 005504 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH-----------------EFMLVDTGGVLNVS 225 (693)
Q Consensus 163 ~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~-----------------~~~lvDTpG~~~~~ 225 (693)
..+|+|||.||||||||||+|++.+ +.++++|++|++++.+.+.+.+. ++.++||||+....
T Consensus 21 ~~kvgIVG~PNvGKSTLfnaLt~~~-~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga 99 (390)
T PTZ00258 21 NLKMGIVGLPNVGKSTTFNALCKQQ-VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA 99 (390)
T ss_pred CcEEEEECCCCCChHHHHHHHhcCc-ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence 3589999999999999999999877 68999999999999999887643 48999999997532
Q ss_pred CCchhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCC
Q 005504 226 KSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQ 283 (693)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~ 283 (693)
.... .+..++...+++||++++|+|+.
T Consensus 100 ~~g~-------------------------------gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 100 SEGE-------------------------------GLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cchh-------------------------------HHHHHHHHHHHHCCEEEEEEeCC
Confidence 2111 13367788999999999999974
No 468
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.52 E-value=7.7e-14 Score=163.88 Aligned_cols=140 Identities=21% Similarity=0.301 Sum_probs=106.4
Q ss_pred CCCeEEEEcCCCCChhhHHHHhhcCceee-----ecC------------CCCceeeeEEEEEEecCeeEEEEecCCcccc
Q 005504 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAI-----VVD------------EPGVTRDRMYGRSFWGEHEFMLVDTGGVLNV 224 (693)
Q Consensus 162 ~~~~V~ivG~~nvGKSsL~n~l~~~~~~~-----v~~------------~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~ 224 (693)
...+|+|+||+|+|||||+|+|+.....+ +.+ ..|+|.+.....+.|++..+.+|||||+.++
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~ 88 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF 88 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence 35689999999999999999997432111 111 4688999999999999999999999999652
Q ss_pred cCCchhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCC
Q 005504 225 SKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDK 304 (693)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~ 304 (693)
. ..+..+++.+|+++||+|+..+...++..+++++++ .+.
T Consensus 89 ~--------------------------------------~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~--~~~ 128 (689)
T TIGR00484 89 T--------------------------------------VEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANR--YEV 128 (689)
T ss_pred h--------------------------------------HHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHH--cCC
Confidence 1 234578899999999999999999999999998877 478
Q ss_pred cEEEEecccCCccchhhhHHH-H-HhcCC----CCccccccCC
Q 005504 305 FIILAVNKCESPRKGIMQVSE-F-WSLGF----SPLPISAISG 341 (693)
Q Consensus 305 p~ivv~NK~D~~~~~~~~~~~-~-~~~g~----~~v~iSA~~g 341 (693)
|+++|+||+|+.........+ + ..+++ ..+|+||.++
T Consensus 129 p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ipis~~~~ 171 (689)
T TIGR00484 129 PRIAFVNKMDKTGANFLRVVNQIKQRLGANAVPIQLPIGAEDN 171 (689)
T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEEeccccCCC
Confidence 999999999987643222211 1 12233 2578888766
No 469
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.51 E-value=1.4e-13 Score=127.73 Aligned_cols=137 Identities=21% Similarity=0.304 Sum_probs=97.2
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhcccC
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (693)
.+|+++|.+++|||||+++|.|... ....|.... +.+ ..|||||-+-.. +
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~-----~~~KTq~i~-----~~~---~~IDTPGEyiE~---~-------------- 51 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEI-----RYKKTQAIE-----YYD---NTIDTPGEYIEN---P-------------- 51 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCC-----CcCccceeE-----ecc---cEEECChhheeC---H--------------
Confidence 4799999999999999999998652 112233332 222 349999965311 1
Q ss_pred CCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCc--cchhh
Q 005504 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESP--RKGIM 321 (693)
Q Consensus 244 ~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~--~~~~~ 321 (693)
.+.+.......+||+|++|.|+..+.......+...+ .+|+|=|+||+|+. ..+..
T Consensus 52 -----------------~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~fa~~f-----~~pvIGVITK~Dl~~~~~~i~ 109 (143)
T PF10662_consen 52 -----------------RFYHALIVTAQDADVVLLLQDATEPRSVFPPGFASMF-----NKPVIGVITKIDLPSDDANIE 109 (143)
T ss_pred -----------------HHHHHHHHHHhhCCEEEEEecCCCCCccCCchhhccc-----CCCEEEEEECccCccchhhHH
Confidence 1234555667899999999999987665555555443 67999999999998 33333
Q ss_pred hHHHH-HhcCC-CCccccccCCCCHHHHHHHHH
Q 005504 322 QVSEF-WSLGF-SPLPISAISGTGTGELLDLVC 352 (693)
Q Consensus 322 ~~~~~-~~~g~-~~v~iSA~~g~gi~~Ll~~i~ 352 (693)
....+ ...|+ .+|++|+.+|+|+++|.+.|.
T Consensus 110 ~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 110 RAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred HHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 33333 34566 689999999999999998874
No 470
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.51 E-value=1.2e-13 Score=128.29 Aligned_cols=146 Identities=22% Similarity=0.204 Sum_probs=95.7
Q ss_pred EEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEe--cCeeEEEEecCCcccccCCchhhhhhhhhhhcccCCC
Q 005504 168 IVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW--GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEG 245 (693)
Q Consensus 168 ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~--~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~g 245 (693)
++|++|+|||||+|+|.+..... .....+..+........ .+..+.+|||||.....
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------------------- 59 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVP-EEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFR-------------------- 59 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCC-cccccchhheeeEEEEECCEEEEEEEEecCChHHHH--------------------
Confidence 58999999999999999876321 11222222222222222 26779999999986421
Q ss_pred CchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHH---HHHHhhcCCCcEEEEecccCCccchhhh
Q 005504 246 IPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIA---DWLRKNYMDKFIILAVNKCESPRKGIMQ 322 (693)
Q Consensus 246 ~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~---~~L~~~~~~~p~ivv~NK~D~~~~~~~~ 322 (693)
......+..+|++++|+|+..+....+.... ........++|+++|+||+|+.......
T Consensus 60 ------------------~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~ 121 (157)
T cd00882 60 ------------------SLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVS 121 (157)
T ss_pred ------------------hHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchH
Confidence 1123567889999999999976555443322 1112223589999999999987543222
Q ss_pred HH----H-HHhcCCCCccccccCCCCHHHHHHHHH
Q 005504 323 VS----E-FWSLGFSPLPISAISGTGTGELLDLVC 352 (693)
Q Consensus 323 ~~----~-~~~~g~~~v~iSA~~g~gi~~Ll~~i~ 352 (693)
.. . ....+.+++++||.++.|+.+++++|.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 122 EEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred HHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 11 1 122345789999999999999999875
No 471
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.51 E-value=1.8e-13 Score=131.08 Aligned_cols=152 Identities=21% Similarity=0.235 Sum_probs=104.0
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCe--eEEEEecCCcccccCCchhhhhhhhhhhccc
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (693)
+|+++|.++||||||++++.+.. ......+....+.....+..++. .+.+|||+|.....
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~----------------- 62 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGE-FPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFD----------------- 62 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS-TTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGH-----------------
T ss_pred CEEEECCCCCCHHHHHHHHHhhc-ccccccccccccccccccccccccccccccccccccccc-----------------
Confidence 58999999999999999999865 22222222224555556666564 58999999975411
Q ss_pred CCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH-HHHHHHHhhcC-CCcEEEEecccCCccchh
Q 005504 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYM-DKFIILAVNKCESPRKGI 320 (693)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~-~i~~~L~~~~~-~~p~ivv~NK~D~~~~~~ 320 (693)
......++.+|++++|+|..+.-+.... .+...+..... +.|+++|+||+|+.....
T Consensus 63 ---------------------~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~ 121 (162)
T PF00071_consen 63 ---------------------SLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDERE 121 (162)
T ss_dssp ---------------------HHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSS
T ss_pred ---------------------ccccccccccccccccccccccccccccccccccccccccccccceeeecccccccccc
Confidence 1223567889999999998864333221 33333333333 589999999999876322
Q ss_pred hh---HHH-HHhcCCCCccccccCCCCHHHHHHHHHhhc
Q 005504 321 MQ---VSE-FWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (693)
Q Consensus 321 ~~---~~~-~~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l 355 (693)
.. ... ...++..++.+||+++.|+.+++..+++.+
T Consensus 122 v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 122 VSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp SCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 21 121 234567899999999999999999988765
No 472
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.51 E-value=2.2e-13 Score=153.98 Aligned_cols=115 Identities=20% Similarity=0.262 Sum_probs=87.9
Q ss_pred CCeEEEEcCCCCChhhHHHHhhcCcee-----ee----------cC------CCCceeeeEEEEEEecCeeEEEEecCCc
Q 005504 163 LPRVAIVGRPNVGKSALFNRLVGGNRA-----IV----------VD------EPGVTRDRMYGRSFWGEHEFMLVDTGGV 221 (693)
Q Consensus 163 ~~~V~ivG~~nvGKSsL~n~l~~~~~~-----~v----------~~------~~~~T~~~~~~~~~~~~~~~~lvDTpG~ 221 (693)
..+|+|+||+|+|||||+++|+....+ .+ .+ ..|.|.......+.|++..+.+|||||+
T Consensus 10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~ 89 (526)
T PRK00741 10 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGH 89 (526)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCc
Confidence 458999999999999999999732111 11 11 1134444445567889999999999999
Q ss_pred ccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhc
Q 005504 222 LNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY 301 (693)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~ 301 (693)
.++. ..+..++..+|++|+|+|+..++..+...+++.++.
T Consensus 90 ~df~--------------------------------------~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~-- 129 (526)
T PRK00741 90 EDFS--------------------------------------EDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRL-- 129 (526)
T ss_pred hhhH--------------------------------------HHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHh--
Confidence 6521 345577889999999999999999888888888776
Q ss_pred CCCcEEEEecccCCcc
Q 005504 302 MDKFIILAVNKCESPR 317 (693)
Q Consensus 302 ~~~p~ivv~NK~D~~~ 317 (693)
.+.|+++++||+|+..
T Consensus 130 ~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 130 RDTPIFTFINKLDRDG 145 (526)
T ss_pred cCCCEEEEEECCcccc
Confidence 5899999999999743
No 473
>PRK12740 elongation factor G; Reviewed
Probab=99.51 E-value=2.5e-13 Score=159.59 Aligned_cols=109 Identities=27% Similarity=0.298 Sum_probs=86.9
Q ss_pred ecCCCCChhhHHHHHhcCCCceec-----------C------CCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccC
Q 005504 377 VGRPNVGKSSILNALVGEDRTIVS-----------P------ISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASS 439 (693)
Q Consensus 377 vG~~n~GKSSLin~llg~~~~~v~-----------~------~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~ 439 (693)
+|++|+|||||+++|+.....+.. + ..|.|.+.....+.+ ++..+.+|||||+.++.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~-~~~~i~liDtPG~~~~~----- 74 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW-KGHKINLIDTPGHVDFT----- 74 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE-CCEEEEEEECCCcHHHH-----
Confidence 699999999999999754332211 1 236677666666764 78899999999986542
Q ss_pred CChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCC
Q 005504 440 GSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIP 500 (693)
Q Consensus 440 ~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~ 500 (693)
..+..+++.+|++++|+|++.+...+...++..+...++|+++|+||+|+..
T Consensus 75 ---------~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 75 ---------GEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAG 126 (668)
T ss_pred ---------HHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 2345578899999999999999999988888888889999999999999864
No 474
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.50 E-value=6.3e-14 Score=146.38 Aligned_cols=144 Identities=21% Similarity=0.323 Sum_probs=99.7
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceee-----ec------C------CCCceeeeEEEEEEecCeeEEEEecCCcccccCC
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAI-----VV------D------EPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKS 227 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~-----v~------~------~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~ 227 (693)
+|+++|++|+|||||+|+|++....+ +. + ..+.|.......+.|++..+.+|||||+.++
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f--- 77 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADF--- 77 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHH---
Confidence 48999999999999999998542111 11 1 1134444555677889999999999998541
Q ss_pred chhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEE
Q 005504 228 QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFII 307 (693)
Q Consensus 228 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~i 307 (693)
...+..++..+|++++|+|+..+.......+++++.. .+.|++
T Consensus 78 -----------------------------------~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~--~~~p~i 120 (268)
T cd04170 78 -----------------------------------VGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADE--AGIPRI 120 (268)
T ss_pred -----------------------------------HHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEE
Confidence 2445678889999999999999988888888888776 578999
Q ss_pred EEecccCCccchhhhHHH-HH-hcCCCCcc--ccccCCCCHHHHH
Q 005504 308 LAVNKCESPRKGIMQVSE-FW-SLGFSPLP--ISAISGTGTGELL 348 (693)
Q Consensus 308 vv~NK~D~~~~~~~~~~~-~~-~~g~~~v~--iSA~~g~gi~~Ll 348 (693)
+|+||+|+.......... +. .++..+++ +...+|.|+..++
T Consensus 121 ivvNK~D~~~~~~~~~~~~l~~~~~~~~~~~~ip~~~~~~~~~~v 165 (268)
T cd04170 121 IFINKMDRERADFDKTLAALQEAFGRPVVPLQLPIGEGDDFKGVV 165 (268)
T ss_pred EEEECCccCCCCHHHHHHHHHHHhCCCeEEEEecccCCCceeEEE
Confidence 999999987643222211 21 13444433 4455565554443
No 475
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.50 E-value=1.3e-13 Score=153.38 Aligned_cols=143 Identities=21% Similarity=0.244 Sum_probs=104.8
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCcee------------------------------eecCCCCceeeeEEEEEEecCeeE
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRA------------------------------IVVDEPGVTRDRMYGRSFWGEHEF 213 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~------------------------------~v~~~~~~T~~~~~~~~~~~~~~~ 213 (693)
.+|+++||.++|||||+.+|+..-.. ......|+|.+.....+.++++.+
T Consensus 8 ~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~~i 87 (446)
T PTZ00141 8 INLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYYF 87 (446)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCeEE
Confidence 47999999999999999999742100 011234788888888888999999
Q ss_pred EEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCC-------
Q 005504 214 MLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL------- 286 (693)
Q Consensus 214 ~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~------- 286 (693)
.++||||+.+ +...+..++..+|++++|||+..|.
T Consensus 88 ~lIDtPGh~~--------------------------------------f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~ 129 (446)
T PTZ00141 88 TIIDAPGHRD--------------------------------------FIKNMITGTSQADVAILVVASTAGEFEAGISK 129 (446)
T ss_pred EEEECCChHH--------------------------------------HHHHHHHhhhhcCEEEEEEEcCCCceecccCC
Confidence 9999999864 2245567788999999999999986
Q ss_pred CHHHHHHHHHHHhhcCCCc-EEEEecccCCcc-----chhh----hHHH-HHhcCC-----CCccccccCCCCHHH
Q 005504 287 TAADEEIADWLRKNYMDKF-IILAVNKCESPR-----KGIM----QVSE-FWSLGF-----SPLPISAISGTGTGE 346 (693)
Q Consensus 287 ~~~d~~i~~~L~~~~~~~p-~ivv~NK~D~~~-----~~~~----~~~~-~~~~g~-----~~v~iSA~~g~gi~~ 346 (693)
..+..+.+..++. .+.| +|+++||+|... .... ...+ +...|+ +++|+||.+|.|+.+
T Consensus 130 ~~qT~eh~~~~~~--~gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 130 DGQTREHALLAFT--LGVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred CccHHHHHHHHHH--cCCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 4677888888776 4665 679999999532 1111 1111 222343 579999999999864
No 476
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.50 E-value=6.9e-13 Score=141.79 Aligned_cols=89 Identities=27% Similarity=0.324 Sum_probs=73.7
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCC----------------CeEEEEeCccccchhh
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG----------------QKFRLIDTAGIRKRAA 435 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g----------------~~i~liDTpG~~~~~~ 435 (693)
++|+++|.||||||||+|+|++.. ..++++|+||+++..+.+...+. ..+.++||||+.+..
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a- 80 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA- 80 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC-
Confidence 689999999999999999999987 78999999999998877665332 259999999997632
Q ss_pred hccCCChhhHhHHHHHHHHHhcCCeEEEEeccc
Q 005504 436 IASSGSTTEALSVNRAFRAIRRSDVVALVIEAM 468 (693)
Q Consensus 436 ~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~ 468 (693)
........+++.+++.||++++|+|+.
T Consensus 81 ------~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 81 ------SKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred ------ChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 223344578899999999999999984
No 477
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.50 E-value=9.9e-13 Score=135.14 Aligned_cols=130 Identities=22% Similarity=0.284 Sum_probs=94.6
Q ss_pred cCCcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHH
Q 005504 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (693)
Q Consensus 369 ~~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (693)
....+|+++|++|||||||+|+|+|.....++...++|.......... +|..+.+|||||+.+...- ........
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~-~g~~i~vIDTPGl~~~~~~----~~~~~~~~ 103 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTV-DGFKLNIIDTPGLLESVMD----QRVNRKIL 103 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEE-CCeEEEEEECCCcCcchhh----HHHHHHHH
Confidence 455899999999999999999999998888888888888877666553 7889999999999764210 01111122
Q ss_pred HHHHHHHh--cCCeEEEEeccc-ccCCHHHHHHHHHHHH-hC----CcEEEEEeccCCCCCcc
Q 005504 449 NRAFRAIR--RSDVVALVIEAM-ACITEQDCRIAERIEQ-EG----KGCLIVVNKWDTIPNKN 503 (693)
Q Consensus 449 ~~~~~~i~--~aDvvllViDa~-~~~~~~d~~~~~~l~~-~~----~p~Ivv~NK~Dl~~~~~ 503 (693)
....+++. ..|++++|.... ..+...|..+++.+.+ .| .++++|+||+|...+..
T Consensus 104 ~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~ 166 (249)
T cd01853 104 SSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDG 166 (249)
T ss_pred HHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCC
Confidence 22333343 578999996553 2467788888888876 34 57999999999876543
No 478
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.50 E-value=4.9e-13 Score=141.68 Aligned_cols=147 Identities=25% Similarity=0.312 Sum_probs=113.7
Q ss_pred CCcEEEeecCCCCChhhHHHHHhcCCCc-----eec----------CCCCcccceEEEEEeCCCCCeEEEEeCccccchh
Q 005504 370 RIPAIAIVGRPNVGKSSILNALVGEDRT-----IVS----------PISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRA 434 (693)
Q Consensus 370 ~~~~I~ivG~~n~GKSSLin~llg~~~~-----~v~----------~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~ 434 (693)
...+||||.+...|||||+..||.+... .+. ...|.|+-..-..+. |++.++.++||||+-+|+
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~-~~~~~INIvDTPGHADFG 82 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVN-YNGTRINIVDTPGHADFG 82 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceee-cCCeEEEEecCCCcCCcc
Confidence 3479999999999999999999964322 111 223888776666666 488999999999999985
Q ss_pred hhccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcchhhHHHHHHHH
Q 005504 435 AIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDV 514 (693)
Q Consensus 435 ~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i 514 (693)
. ...+.+...|.|++++||.+|..+|.+.+++...+.|.+-|+|+||+|........ +..++
T Consensus 83 G--------------EVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~----Vvd~v 144 (603)
T COG1217 83 G--------------EVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDE----VVDEV 144 (603)
T ss_pred c--------------hhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHH----HHHHH
Confidence 4 23346678999999999999999999999999999999999999999997654433 33333
Q ss_pred HHHHhcCC------CCcEEEeccccCC
Q 005504 515 REKLRALD------WAPIVYSTAIAGQ 535 (693)
Q Consensus 515 ~~~l~~~~------~~piv~iSA~~g~ 535 (693)
...|..++ ..|+++.||+.|+
T Consensus 145 fDLf~~L~A~deQLdFPivYAS~~~G~ 171 (603)
T COG1217 145 FDLFVELGATDEQLDFPIVYASARNGT 171 (603)
T ss_pred HHHHHHhCCChhhCCCcEEEeeccCce
Confidence 33333322 4799999999986
No 479
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.49 E-value=2.8e-13 Score=150.35 Aligned_cols=157 Identities=16% Similarity=0.145 Sum_probs=107.5
Q ss_pred CCeEEEEcCCCCChhhHHHHhhcCcee--eecCCCCceeeeEEEEEE---------------------------------
Q 005504 163 LPRVAIVGRPNVGKSALFNRLVGGNRA--IVVDEPGVTRDRMYGRSF--------------------------------- 207 (693)
Q Consensus 163 ~~~V~ivG~~nvGKSsL~n~l~~~~~~--~v~~~~~~T~~~~~~~~~--------------------------------- 207 (693)
..+|+++||.+.|||||+.+|+|..-. .-....|.|.+..+....
T Consensus 34 ~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (460)
T PTZ00327 34 TINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKM 113 (460)
T ss_pred cEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccccc
Confidence 358999999999999999999985321 111222455443332110
Q ss_pred ecCeeEEEEecCCcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCC-C
Q 005504 208 WGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG-L 286 (693)
Q Consensus 208 ~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~-~ 286 (693)
...+.+.+|||||+.. +.+.+..++..+|++++|||+..+ .
T Consensus 114 ~~~~~i~~IDtPGH~~--------------------------------------fi~~m~~g~~~~D~alLVVda~~g~~ 155 (460)
T PTZ00327 114 TLKRHVSFVDCPGHDI--------------------------------------LMATMLNGAAVMDAALLLIAANESCP 155 (460)
T ss_pred cccceEeeeeCCCHHH--------------------------------------HHHHHHHHHhhCCEEEEEEECCCCcc
Confidence 0024689999999853 224556778899999999999986 6
Q ss_pred CHHHHHHHHHHHhhcCCCcEEEEecccCCccchhh-----hHHHHHh----cCCCCccccccCCCCHHHHHHHHHhhccc
Q 005504 287 TAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM-----QVSEFWS----LGFSPLPISAISGTGTGELLDLVCSELKK 357 (693)
Q Consensus 287 ~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~~~-----~~~~~~~----~g~~~v~iSA~~g~gi~~Ll~~i~~~l~~ 357 (693)
.++..+.+..+... .-+++|+|+||+|+...... ...++.. .+.+++++||.+|.|++.|++.|.+.++.
T Consensus 156 ~~qT~ehl~i~~~l-gi~~iIVvlNKiDlv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 156 QPQTSEHLAAVEIM-KLKHIIILQNKIDLVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred chhhHHHHHHHHHc-CCCcEEEEEecccccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 77776666655542 23568999999999753211 1111111 24478999999999999999999987764
Q ss_pred c
Q 005504 358 V 358 (693)
Q Consensus 358 ~ 358 (693)
.
T Consensus 235 ~ 235 (460)
T PTZ00327 235 P 235 (460)
T ss_pred C
Confidence 3
No 480
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=3.5e-13 Score=127.08 Aligned_cols=151 Identities=17% Similarity=0.168 Sum_probs=107.8
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCe--eEEEEecCCcccccCCchhhhhhhhhhhcc
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~--~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (693)
.++.++|..|||||.|+-+++.++...+.+ .....+.....+.++++ ++++|||+|++.
T Consensus 7 fKyIiiGd~gVGKSclllrf~~krF~~~hd-~TiGvefg~r~~~id~k~IKlqiwDtaGqe~------------------ 67 (216)
T KOG0098|consen 7 FKYIIIGDTGVGKSCLLLRFTDKRFQPVHD-LTIGVEFGARMVTIDGKQIKLQIWDTAGQES------------------ 67 (216)
T ss_pred EEEEEECCCCccHHHHHHHHhccCcccccc-ceeeeeeceeEEEEcCceEEEEEEecCCcHH------------------
Confidence 478899999999999999999887433333 33344445556667664 589999999975
Q ss_pred cCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHH---hh-cCCCcEEEEecccCCcc
Q 005504 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLR---KN-YMDKFIILAVNKCESPR 317 (693)
Q Consensus 242 ~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~---~~-~~~~p~ivv~NK~D~~~ 317 (693)
++..+..+++.+-.+|+|+|....-+. ..+..||. +. ..+..++++.||+|+..
T Consensus 68 --------------------frsv~~syYr~a~GalLVydit~r~sF--~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~ 125 (216)
T KOG0098|consen 68 --------------------FRSVTRSYYRGAAGALLVYDITRRESF--NHLTSWLEDARQHSNENMVIMLIGNKSDLEA 125 (216)
T ss_pred --------------------HHHHHHHHhccCcceEEEEEccchhhH--HHHHHHHHHHHHhcCCCcEEEEEcchhhhhc
Confidence 345677899999999999998865443 22333332 22 24667899999999976
Q ss_pred chhhhHHH----HHhcCCCCccccccCCCCHHHHHHHHHhhc
Q 005504 318 KGIMQVSE----FWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (693)
Q Consensus 318 ~~~~~~~~----~~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l 355 (693)
.......+ ..+.|+....+||+++.|+++.+..+...+
T Consensus 126 rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nta~~I 167 (216)
T KOG0098|consen 126 RREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINTAKEI 167 (216)
T ss_pred cccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHHHHHH
Confidence 43322211 345788888999999999999887665443
No 481
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.49 E-value=2.1e-13 Score=137.38 Aligned_cols=167 Identities=16% Similarity=0.231 Sum_probs=112.1
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeec-CCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhcccC
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVV-DEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~-~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (693)
+|+++|.+|+||||++|.|+|...+... ...++|..+......++|+.+.||||||+.+.......+.+++..|..++.
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~ 81 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCS 81 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhcc
Confidence 6899999999999999999999865554 345789999999889999999999999998755555555555555554444
Q ss_pred CCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhc---CCCcEEEEecccCCccchh
Q 005504 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY---MDKFIILAVNKCESPRKGI 320 (693)
Q Consensus 244 ~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~---~~~p~ivv~NK~D~~~~~~ 320 (693)
|| .+++|||+... .++..+...++++.+.+ .-+.++||++.+|......
T Consensus 82 ~g---------------------------~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~ 133 (212)
T PF04548_consen 82 PG---------------------------PHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDS 133 (212)
T ss_dssp T----------------------------ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTT
T ss_pred CC---------------------------CeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccccc
Confidence 44 47899999988 89999999999888743 2246888888888654321
Q ss_pred -hh---------HHHH-HhcCCCCcccccc------CCCCHHHHHHHHHhhccccc
Q 005504 321 -MQ---------VSEF-WSLGFSPLPISAI------SGTGTGELLDLVCSELKKVE 359 (693)
Q Consensus 321 -~~---------~~~~-~~~g~~~v~iSA~------~g~gi~~Ll~~i~~~l~~~~ 359 (693)
.. ..++ ...+..++.+... ....+.+|++.|.+++.+..
T Consensus 134 ~~~~l~~~~~~~l~~li~~c~~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 134 LEDYLKKESNEALQELIEKCGGRYHVFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhccCchhHhHHhhhcCCEEEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 00 1111 1234344433433 34568889999988887654
No 482
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.48 E-value=2.1e-13 Score=162.78 Aligned_cols=117 Identities=20% Similarity=0.270 Sum_probs=91.7
Q ss_pred cCCcEEEeecCCCCChhhHHHHHhcCCCceecCCC---------------CcccceEEEEEeCC---------------C
Q 005504 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPIS---------------GTTRDAIDTEFTGP---------------E 418 (693)
Q Consensus 369 ~~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~---------------gtT~d~~~~~~~~~---------------~ 418 (693)
.+.++|+|+|+.++|||||+++|+.....+..... |+|.++....+.+. +
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 34579999999999999999999976544333233 44444332222221 2
Q ss_pred CCeEEEEeCccccchhhhccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCC
Q 005504 419 GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDT 498 (693)
Q Consensus 419 g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl 498 (693)
+..+.|+||||+.+|. ..+..+++.+|++|+|+|+.+|+..+...+++++...++|+|+++||||+
T Consensus 97 ~~~inliDtPGh~dF~--------------~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~ 162 (843)
T PLN00116 97 EYLINLIDSPGHVDFS--------------SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDR 162 (843)
T ss_pred ceEEEEECCCCHHHHH--------------HHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCcc
Confidence 5578999999997762 34567889999999999999999999999999999999999999999998
Q ss_pred C
Q 005504 499 I 499 (693)
Q Consensus 499 ~ 499 (693)
.
T Consensus 163 ~ 163 (843)
T PLN00116 163 C 163 (843)
T ss_pred c
Confidence 6
No 483
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.48 E-value=1.7e-13 Score=133.88 Aligned_cols=149 Identities=24% Similarity=0.302 Sum_probs=103.5
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhhcccC
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (693)
.+|+++|..|+|||||+++|.......+.+ |.......+.+.+..+.++|.+|......
T Consensus 15 ~~ililGl~~sGKTtll~~l~~~~~~~~~p----T~g~~~~~i~~~~~~~~~~d~gG~~~~~~----------------- 73 (175)
T PF00025_consen 15 IKILILGLDGSGKTTLLNRLKNGEISETIP----TIGFNIEEIKYKGYSLTIWDLGGQESFRP----------------- 73 (175)
T ss_dssp EEEEEEESTTSSHHHHHHHHHSSSEEEEEE----ESSEEEEEEEETTEEEEEEEESSSGGGGG-----------------
T ss_pred EEEEEECCCccchHHHHHHhhhccccccCc----ccccccceeeeCcEEEEEEeccccccccc-----------------
Confidence 579999999999999999999765333332 44455566778999999999999754221
Q ss_pred CCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCC--HHHHHHHHHHHh-hcCCCcEEEEecccCCccchh
Q 005504 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLT--AADEEIADWLRK-NYMDKFIILAVNKCESPRKGI 320 (693)
Q Consensus 244 ~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~--~~d~~i~~~L~~-~~~~~p~ivv~NK~D~~~~~~ 320 (693)
.+..++..+|+++||+|+.+.-. ..-..+.+++.. ...++|+++++||+|......
T Consensus 74 ---------------------~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~ 132 (175)
T PF00025_consen 74 ---------------------LWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMS 132 (175)
T ss_dssp ---------------------GGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSST
T ss_pred ---------------------cceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcch
Confidence 12245678999999999986422 222233444432 235799999999999875321
Q ss_pred -hhHHHH---Hhc----CCCCccccccCCCCHHHHHHHHHhh
Q 005504 321 -MQVSEF---WSL----GFSPLPISAISGTGTGELLDLVCSE 354 (693)
Q Consensus 321 -~~~~~~---~~~----g~~~v~iSA~~g~gi~~Ll~~i~~~ 354 (693)
...... ..+ .+.++.+||.+|.|+.+.+++|.+.
T Consensus 133 ~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 133 EEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp HHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred hhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhc
Confidence 111211 112 2257899999999999999999864
No 484
>KOG2484 consensus GTPase [General function prediction only]
Probab=99.48 E-value=1.9e-13 Score=142.89 Aligned_cols=162 Identities=21% Similarity=0.275 Sum_probs=113.0
Q ss_pred HHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCccchhhh-HHHHHhcCC-CCccccccC
Q 005504 263 ERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ-VSEFWSLGF-SPLPISAIS 340 (693)
Q Consensus 263 ~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~~~~-~~~~~~~g~-~~v~iSA~~ 340 (693)
.+.+...++.+|+||.|+|+++++..-..++-+++.+...++..|+|+||+|+...+..+ ...++...+ .+++..+..
T Consensus 137 ~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~ptv~fkast~ 216 (435)
T KOG2484|consen 137 DKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRREGPTVAFKASTQ 216 (435)
T ss_pred HHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhhCCcceeecccc
Confidence 356677889999999999999999888888888886543468999999999998765443 333333333 333333332
Q ss_pred CCCHH--H-------HHHHHHhhcccccCccchhhhccCCcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEE
Q 005504 341 GTGTG--E-------LLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAID 411 (693)
Q Consensus 341 g~gi~--~-------Ll~~i~~~l~~~~~~~~~~~~~~~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~ 411 (693)
+.+.. . -.+.+.+.+.++... ..-...++++|+|.|||||||++|+|.....+.+++.||.|+....
T Consensus 217 ~~~~~~~~~~~s~c~gae~l~~~lgny~~~----~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqe 292 (435)
T KOG2484|consen 217 MQNSNSKNLQSSVCFGAETLMKVLGNYCRK----GELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQE 292 (435)
T ss_pred cccccccccccchhhhHHHHHHHhcCcccc----cccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhh
Confidence 22210 0 112223333332211 0113458999999999999999999999988999999999998766
Q ss_pred EEEeCCCCCeEEEEeCccccc
Q 005504 412 TEFTGPEGQKFRLIDTAGIRK 432 (693)
Q Consensus 412 ~~~~~~~g~~i~liDTpG~~~ 432 (693)
+.+ +..+.|+|.||+.-
T Consensus 293 V~L----dk~i~llDsPgiv~ 309 (435)
T KOG2484|consen 293 VKL----DKKIRLLDSPGIVP 309 (435)
T ss_pred eec----cCCceeccCCceee
Confidence 543 45799999999854
No 485
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.48 E-value=1.1e-12 Score=139.19 Aligned_cols=157 Identities=18% Similarity=0.230 Sum_probs=120.6
Q ss_pred CCeEEEEcCCCCChhhHHHHhhcCcee---------------eecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCC
Q 005504 163 LPRVAIVGRPNVGKSALFNRLVGGNRA---------------IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKS 227 (693)
Q Consensus 163 ~~~V~ivG~~nvGKSsL~n~l~~~~~~---------------~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~ 227 (693)
...|||+-|.+.|||||+++|+..... ......|+|.-..-.-+.|++..+.+|||||+-++...
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 457999999999999999999865211 11233477777766777899999999999999876532
Q ss_pred chhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEE
Q 005504 228 QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFII 307 (693)
Q Consensus 228 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~i 307 (693)
..+.+.-.|.++++||+..|..++...+++-..+ .+.+-|
T Consensus 85 --------------------------------------VERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~--~gL~PI 124 (603)
T COG1217 85 --------------------------------------VERVLSMVDGVLLLVDASEGPMPQTRFVLKKALA--LGLKPI 124 (603)
T ss_pred --------------------------------------hhhhhhhcceEEEEEEcccCCCCchhhhHHHHHH--cCCCcE
Confidence 3366777899999999999999999887776555 366678
Q ss_pred EEecccCCccchhhhH----HH-H-------HhcCCCCccccccCC----------CCHHHHHHHHHhhccccc
Q 005504 308 LAVNKCESPRKGIMQV----SE-F-------WSLGFSPLPISAISG----------TGTGELLDLVCSELKKVE 359 (693)
Q Consensus 308 vv~NK~D~~~~~~~~~----~~-~-------~~~g~~~v~iSA~~g----------~gi~~Ll~~i~~~l~~~~ 359 (693)
+|+||+|++....... .+ | .+++|++++.||..| .++.-|++.|.++++...
T Consensus 125 VVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 125 VVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred EEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence 9999999987543221 11 2 235788999999987 468889999999998765
No 486
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.48 E-value=3.2e-13 Score=134.44 Aligned_cols=157 Identities=18% Similarity=0.141 Sum_probs=101.4
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeec----CCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhh
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVV----DEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~----~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~ 239 (693)
.+|+++|.+|+|||||+|+|+|....... ....+|........ -....+.+|||||+.......+.
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~--------- 71 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFPPDD--------- 71 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCCHHH---------
Confidence 47999999999999999999985421111 11123333322111 12357899999999753221111
Q ss_pred cccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCCcEEEEecccCCccch
Q 005504 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKG 319 (693)
Q Consensus 240 ~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~p~ivv~NK~D~~~~~ 319 (693)
+++ ...+..+|++++|.|. +++..+..+++++++ .++|+++|+||+|+....
T Consensus 72 ---------------------~l~---~~~~~~~d~~l~v~~~--~~~~~d~~~~~~l~~--~~~~~ilV~nK~D~~~~~ 123 (197)
T cd04104 72 ---------------------YLE---EMKFSEYDFFIIISST--RFSSNDVKLAKAIQC--MGKKFYFVRTKVDRDLSN 123 (197)
T ss_pred ---------------------HHH---HhCccCcCEEEEEeCC--CCCHHHHHHHHHHHH--hCCCEEEEEecccchhhh
Confidence 111 1224678999988654 478888899999988 478999999999984210
Q ss_pred ----------hhhH--------HHHH-hcC--C-CCcccccc--CCCCHHHHHHHHHhhcccc
Q 005504 320 ----------IMQV--------SEFW-SLG--F-SPLPISAI--SGTGTGELLDLVCSELKKV 358 (693)
Q Consensus 320 ----------~~~~--------~~~~-~~g--~-~~v~iSA~--~g~gi~~Ll~~i~~~l~~~ 358 (693)
.... .+.. ..| . .++.+|+. .+.|+..|.+.|...+++.
T Consensus 124 ~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 124 EQRSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred hhccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 0111 1111 112 2 57899998 6899999999999988853
No 487
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.47 E-value=7.8e-13 Score=149.62 Aligned_cols=114 Identities=17% Similarity=0.228 Sum_probs=88.0
Q ss_pred CCeEEEEcCCCCChhhHHHHhhcCcee-----eec----------------CCCCceeeeEEEEEEecCeeEEEEecCCc
Q 005504 163 LPRVAIVGRPNVGKSALFNRLVGGNRA-----IVV----------------DEPGVTRDRMYGRSFWGEHEFMLVDTGGV 221 (693)
Q Consensus 163 ~~~V~ivG~~nvGKSsL~n~l~~~~~~-----~v~----------------~~~~~T~~~~~~~~~~~~~~~~lvDTpG~ 221 (693)
..+|+|+||+|+|||||+++|+....+ .+. ...|+|.......+.|++..+.+|||||+
T Consensus 11 ~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~ 90 (527)
T TIGR00503 11 RRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGH 90 (527)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCCh
Confidence 468999999999999999998632111 111 11245555555667889999999999999
Q ss_pred ccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhc
Q 005504 222 LNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY 301 (693)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~ 301 (693)
.++ ...+..++..+|++|+|+|+..++..+...+++.++.
T Consensus 91 ~df--------------------------------------~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~-- 130 (527)
T TIGR00503 91 EDF--------------------------------------SEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRL-- 130 (527)
T ss_pred hhH--------------------------------------HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh--
Confidence 541 2345678899999999999999998888888887766
Q ss_pred CCCcEEEEecccCCc
Q 005504 302 MDKFIILAVNKCESP 316 (693)
Q Consensus 302 ~~~p~ivv~NK~D~~ 316 (693)
.+.|+++++||+|+.
T Consensus 131 ~~~PiivviNKiD~~ 145 (527)
T TIGR00503 131 RDTPIFTFMNKLDRD 145 (527)
T ss_pred cCCCEEEEEECcccc
Confidence 578999999999984
No 488
>PTZ00416 elongation factor 2; Provisional
Probab=99.47 E-value=4.4e-13 Score=159.80 Aligned_cols=154 Identities=18% Similarity=0.211 Sum_probs=107.7
Q ss_pred cCCcEEEeecCCCCChhhHHHHHhcCCCceecCCC---------------CcccceEEEEEeCC---------CCCeEEE
Q 005504 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPIS---------------GTTRDAIDTEFTGP---------EGQKFRL 424 (693)
Q Consensus 369 ~~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~---------------gtT~d~~~~~~~~~---------~g~~i~l 424 (693)
.+.++|+++|+.++|||||+++|+.....+..... |+|.+.....+.+. .+..+.+
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 34579999999999999999999976554433333 34444322222221 1457999
Q ss_pred EeCccccchhhhccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCCcEEEEEeccCCCCCcc-
Q 005504 425 IDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKN- 503 (693)
Q Consensus 425 iDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~p~Ivv~NK~Dl~~~~~- 503 (693)
+||||+.++ ...+..+++.+|++|+|+|+..|+..++..+++.+.+.++|+|+++||||+.-.+-
T Consensus 97 iDtPG~~~f--------------~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~~~~~~ 162 (836)
T PTZ00416 97 IDSPGHVDF--------------SSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRAILELQ 162 (836)
T ss_pred EcCCCHHhH--------------HHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhhhhhcC
Confidence 999999765 23456788999999999999999999999999999999999999999999862110
Q ss_pred ------hhhHHHHHHHHHHHHhcC--------C----CCcEEEeccccCCC
Q 005504 504 ------QQTATYYEQDVREKLRAL--------D----WAPIVYSTAIAGQS 536 (693)
Q Consensus 504 ------~~~~~~~~~~i~~~l~~~--------~----~~piv~iSA~~g~g 536 (693)
......+.++++..+... . ...+.+.|+..|++
T Consensus 163 ~~~~~~~~~~~~ii~~in~~l~~~~~~~~~~~~~~p~~~~vp~~s~~~~~~ 213 (836)
T PTZ00416 163 LDPEEIYQNFVKTIENVNVIIATYNDELMGDVQVYPEKGTVAFGSGLQGWA 213 (836)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcccccccceecceeccEEEEEeccccce
Confidence 122344455565555411 0 12367778876655
No 489
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.47 E-value=1.4e-12 Score=142.16 Aligned_cols=155 Identities=14% Similarity=0.162 Sum_probs=88.7
Q ss_pred cCCcEEEeecCCCCChhhHHHHHhcCCCceecCCC----CcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhh
Q 005504 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPIS----GTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTE 444 (693)
Q Consensus 369 ~~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~----gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e 444 (693)
++.+++-++|..|+|||.++++++|..... ++.. ..+...+... ...+.++|-|.+-. ... .+.
T Consensus 423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~-~~~~~~~~~~avn~v~~~---g~~k~LiL~ei~~~-~~~-------~l~ 490 (625)
T KOG1707|consen 423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSD-NNTGTTKPRYAVNSVEVK---GQQKYLILREIGED-DQD-------FLT 490 (625)
T ss_pred ceeeeEEEEcCCcCchHHHHHHHhcccccc-ccccCCCCceeeeeeeec---cccceEEEeecCcc-ccc-------ccc
Confidence 356788999999999999999999965433 2222 2222222222 12334566665533 111 111
Q ss_pred HhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHH--HHhCCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCC
Q 005504 445 ALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERI--EQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALD 522 (693)
Q Consensus 445 ~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l--~~~~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~ 522 (693)
.. . ..||++++++|.+++-+..-...+... .....||++|+.|+|+-+..+.... +-.+.....+
T Consensus 491 ~k-------e-~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~~~~Pc~~va~K~dlDe~~Q~~~i-----qpde~~~~~~ 557 (625)
T KOG1707|consen 491 SK-------E-AACDVACLVYDSSNPRSFEYLAEVYNKYFDLYKIPCLMVATKADLDEVPQRYSI-----QPDEFCRQLG 557 (625)
T ss_pred Cc-------c-ceeeeEEEecccCCchHHHHHHHHHHHhhhccCCceEEEeeccccchhhhccCC-----ChHHHHHhcC
Confidence 10 1 579999999999977555544322211 1257899999999998543211111 1122333333
Q ss_pred CCcEEEecccc-CCCHHHHHHHHHHHHHH
Q 005504 523 WAPIVYSTAIA-GQSVDKIIVAAEMVDKE 550 (693)
Q Consensus 523 ~~piv~iSA~~-g~gv~~L~~~i~~~~~~ 550 (693)
-.+-+.+|.++ +. .++|..|......
T Consensus 558 i~~P~~~S~~~~~s--~~lf~kL~~~A~~ 584 (625)
T KOG1707|consen 558 LPPPIHISSKTLSS--NELFIKLATMAQY 584 (625)
T ss_pred CCCCeeeccCCCCC--chHHHHHHHhhhC
Confidence 34455566664 33 6888888766443
No 490
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.46 E-value=3.6e-13 Score=136.12 Aligned_cols=112 Identities=21% Similarity=0.274 Sum_probs=84.5
Q ss_pred eEEEEcCCCCChhhHHHHhhcCceeeec---------------CCCCceeeeEEEEEEec----------CeeEEEEecC
Q 005504 165 RVAIVGRPNVGKSALFNRLVGGNRAIVV---------------DEPGVTRDRMYGRSFWG----------EHEFMLVDTG 219 (693)
Q Consensus 165 ~V~ivG~~nvGKSsL~n~l~~~~~~~v~---------------~~~~~T~~~~~~~~~~~----------~~~~~lvDTp 219 (693)
.|+++||+++|||||+++|+.....+.. ...|+|.+.....+.|. +..+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 6999999999999999999854321111 11244444433333444 5678999999
Q ss_pred CcccccCCchhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHh
Q 005504 220 GVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRK 299 (693)
Q Consensus 220 G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~ 299 (693)
|+.++ ...+..+++.+|++++|+|+..|...++..+++.+..
T Consensus 82 G~~~f--------------------------------------~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~ 123 (222)
T cd01885 82 GHVDF--------------------------------------SSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALK 123 (222)
T ss_pred Ccccc--------------------------------------HHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 99752 2456688999999999999999999998888887766
Q ss_pred hcCCCcEEEEecccCCc
Q 005504 300 NYMDKFIILAVNKCESP 316 (693)
Q Consensus 300 ~~~~~p~ivv~NK~D~~ 316 (693)
.+.|+++|+||+|+.
T Consensus 124 --~~~p~ilviNKiD~~ 138 (222)
T cd01885 124 --ERVKPVLVINKIDRL 138 (222)
T ss_pred --cCCCEEEEEECCCcc
Confidence 468999999999986
No 491
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.46 E-value=6.1e-13 Score=132.67 Aligned_cols=149 Identities=19% Similarity=0.167 Sum_probs=94.3
Q ss_pred cEEEeecCCCCChhhHHHHHhcCCCce-ecCCCCcccceEEEEEeC--CCC--CeEEEEeCccccchhhhccCCChhhHh
Q 005504 372 PAIAIVGRPNVGKSSILNALVGEDRTI-VSPISGTTRDAIDTEFTG--PEG--QKFRLIDTAGIRKRAAIASSGSTTEAL 446 (693)
Q Consensus 372 ~~I~ivG~~n~GKSSLin~llg~~~~~-v~~~~gtT~d~~~~~~~~--~~g--~~i~liDTpG~~~~~~~~~~~~~~e~~ 446 (693)
.||+++|.+|||||||++++++..... ..+..|.+.......+.. .++ ..+.+|||+|..++..+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l---------- 70 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKST---------- 70 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHH----------
Confidence 379999999999999999999764221 112222222222222210 012 36899999998664322
Q ss_pred HHHHHHHHHhcCCeEEEEecccccCCHHHH-HHHHHHHH----------------------hCCcEEEEEeccCCCCCcc
Q 005504 447 SVNRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ----------------------EGKGCLIVVNKWDTIPNKN 503 (693)
Q Consensus 447 ~~~~~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~l~~----------------------~~~p~Ivv~NK~Dl~~~~~ 503 (693)
...+++.+|++|+|+|.++..+.+.. .|+..+.. .+.|+|+|+||+|+.+...
T Consensus 71 ----~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~ 146 (202)
T cd04102 71 ----RAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKE 146 (202)
T ss_pred ----HHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcc
Confidence 12367899999999999998777665 47777654 2579999999999965422
Q ss_pred hhhHHHHHHHHHHHHhcCCCCcEEEeccccCCC
Q 005504 504 QQTATYYEQDVREKLRALDWAPIVYSTAIAGQS 536 (693)
Q Consensus 504 ~~~~~~~~~~i~~~l~~~~~~piv~iSA~~g~g 536 (693)
..... .... ...++...++|.+..+++.+..
T Consensus 147 ~~~~~-~~~~-~~~ia~~~~~~~i~~~c~~~~~ 177 (202)
T cd04102 147 SSGNL-VLTA-RGFVAEQGNAEEINLNCTNGRL 177 (202)
T ss_pred cchHH-HhhH-hhhHHHhcCCceEEEecCCccc
Confidence 11111 1111 2233444468899998887654
No 492
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.46 E-value=7.1e-13 Score=141.66 Aligned_cols=88 Identities=30% Similarity=0.317 Sum_probs=73.5
Q ss_pred CeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCe-----------------eEEEEecCCcccccC
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH-----------------EFMLVDTGGVLNVSK 226 (693)
Q Consensus 164 ~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~-----------------~~~lvDTpG~~~~~~ 226 (693)
.+|+|||.||||||||||+|++.+ +.++++|++|+++..+.+.+.+. .+.++||||+.....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 579999999999999999999988 78999999999999988887663 489999999975322
Q ss_pred CchhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCC
Q 005504 227 SQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQ 283 (693)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~ 283 (693)
..+ -+..++...+++||++++|||+.
T Consensus 82 ~g~-------------------------------glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 82 KGE-------------------------------GLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred hHH-------------------------------HHHHHHHHHHHhCCEEEEEEeCC
Confidence 111 13367788899999999999975
No 493
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.46 E-value=1.6e-13 Score=125.34 Aligned_cols=157 Identities=17% Similarity=0.099 Sum_probs=104.2
Q ss_pred CCcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCC-CCCeEEEEeCccccchhhhccCCChhhHhHH
Q 005504 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (693)
Q Consensus 370 ~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~-~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (693)
..+||+++|..-||||||+-++...+ +................+... ..-.+.+|||+|+.+|-.+...
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~Enk-Fn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPI--------- 81 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENK-FNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPI--------- 81 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhh-cchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCce---------
Confidence 34899999999999999998887432 211111101111111122221 1236899999999998554321
Q ss_pred HHHHHHHhcCCeEEEEecccccCCHHHHH-HHHHHHHh---CCcEEEEEeccCCCCCcchhhHHHHHHHHHHHHhcCCCC
Q 005504 449 NRAFRAIRRSDVVALVIEAMACITEQDCR-IAERIEQE---GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWA 524 (693)
Q Consensus 449 ~~~~~~i~~aDvvllViDa~~~~~~~d~~-~~~~l~~~---~~p~Ivv~NK~Dl~~~~~~~~~~~~~~~i~~~l~~~~~~ 524 (693)
+++.++.+++|+|.++..+.|-.+ |+..++.. .+.++||.||+||.+...... +-.+....--++
T Consensus 82 -----YYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~------qeAe~YAesvGA 150 (218)
T KOG0088|consen 82 -----YYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTR------QEAEAYAESVGA 150 (218)
T ss_pred -----EEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhH------HHHHHHHHhhch
Confidence 569999999999999987776643 66666653 468999999999954332211 111222222357
Q ss_pred cEEEeccccCCCHHHHHHHHHHH
Q 005504 525 PIVYSTAIAGQSVDKIIVAAEMV 547 (693)
Q Consensus 525 piv~iSA~~g~gv~~L~~~i~~~ 547 (693)
.++.+||+.+.|+.+||+.+.+.
T Consensus 151 ~y~eTSAk~N~Gi~elFe~Lt~~ 173 (218)
T KOG0088|consen 151 LYMETSAKDNVGISELFESLTAK 173 (218)
T ss_pred hheecccccccCHHHHHHHHHHH
Confidence 89999999999999999988755
No 494
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.46 E-value=3.2e-13 Score=138.98 Aligned_cols=153 Identities=22% Similarity=0.244 Sum_probs=116.6
Q ss_pred CCcEEEeecCCCCChhhHHHHHhcCCCcee----------c----------------------CCCCcccceEEEEEeCC
Q 005504 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIV----------S----------------------PISGTTRDAIDTEFTGP 417 (693)
Q Consensus 370 ~~~~I~ivG~~n~GKSSLin~llg~~~~~v----------~----------------------~~~gtT~d~~~~~~~~~ 417 (693)
...+++.+|...-|||||+-+|+-....+. + -..|.|+|..+..|..
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT- 83 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST- 83 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc-
Confidence 457999999999999999999985322211 1 1118999988888875
Q ss_pred CCCeEEEEeCccccchhhhccCCChhhHhHHHHHHHHHhcCCeEEEEecccccCCHHHHHHHHHHHHhCC-cEEEEEecc
Q 005504 418 EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGK-GCLIVVNKW 496 (693)
Q Consensus 418 ~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~aDvvllViDa~~~~~~~d~~~~~~l~~~~~-p~Ivv~NK~ 496 (693)
+.++|++.||||+... .+.+......||++|++||+..|+.+|.++..-...-.|+ .+|+++|||
T Consensus 84 ~KRkFIiADTPGHeQY--------------TRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKm 149 (431)
T COG2895 84 EKRKFIIADTPGHEQY--------------TRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKM 149 (431)
T ss_pred ccceEEEecCCcHHHH--------------hhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeee
Confidence 7889999999999553 2234445578999999999999999999876555555565 588999999
Q ss_pred CCCCCcchhhHHHHHHHHHHHHhcCCC--CcEEEeccccCCCHH
Q 005504 497 DTIPNKNQQTATYYEQDVREKLRALDW--APIVYSTAIAGQSVD 538 (693)
Q Consensus 497 Dl~~~~~~~~~~~~~~~i~~~l~~~~~--~piv~iSA~~g~gv~ 538 (693)
||++ .....++++..+.......++. ..+|++||+.|.||-
T Consensus 150 DLvd-y~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 150 DLVD-YSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred cccc-cCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 9987 4456677777776666665543 469999999999964
No 495
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.46 E-value=1.5e-12 Score=120.37 Aligned_cols=153 Identities=21% Similarity=0.264 Sum_probs=107.7
Q ss_pred CcEEEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCCeEEEEeCccccchhhhccCCChhhHhHHHH
Q 005504 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (693)
Q Consensus 371 ~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~ 450 (693)
..+|.++|..|+||||++++|+++....+++..|...... . .++..+.+||..|+......|
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl----~-~~~~~L~iwDvGGq~~lr~~W------------- 77 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTL----E-YKGYTLNIWDVGGQKTLRSYW------------- 77 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEE----E-ecceEEEEEEcCCcchhHHHH-------------
Confidence 4899999999999999999999998666666665554433 3 267899999999986654333
Q ss_pred HHHHHhcCCeEEEEecccccCCHHHH-HHHHH-HHH---hCCcEEEEEeccCCCCCcchhhHHHHH--HHHHHHHhcCCC
Q 005504 451 AFRAIRRSDVVALVIEAMACITEQDC-RIAER-IEQ---EGKGCLIVVNKWDTIPNKNQQTATYYE--QDVREKLRALDW 523 (693)
Q Consensus 451 ~~~~i~~aDvvllViDa~~~~~~~d~-~~~~~-l~~---~~~p~Ivv~NK~Dl~~~~~~~~~~~~~--~~i~~~l~~~~~ 523 (693)
..+++.+|++|+|+|.++...-++- ..+.. +.+ .|.|++++.||.|+...-.. +.+. -.+.+.++. ..
T Consensus 78 -~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~---~~i~~~~~L~~l~ks-~~ 152 (185)
T KOG0073|consen 78 -KNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSL---EEISKALDLEELAKS-HH 152 (185)
T ss_pred -HHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCH---HHHHHhhCHHHhccc-cC
Confidence 1256899999999999876444332 23322 222 38999999999999743222 1222 123333333 35
Q ss_pred CcEEEeccccCCCHHHHHHHHHH
Q 005504 524 APIVYSTAIAGQSVDKIIVAAEM 546 (693)
Q Consensus 524 ~piv~iSA~~g~gv~~L~~~i~~ 546 (693)
.+++.+||.+|.++.+-++++..
T Consensus 153 ~~l~~cs~~tge~l~~gidWL~~ 175 (185)
T KOG0073|consen 153 WRLVKCSAVTGEDLLEGIDWLCD 175 (185)
T ss_pred ceEEEEeccccccHHHHHHHHHH
Confidence 78999999999998887777754
No 496
>PRK13351 elongation factor G; Reviewed
Probab=99.45 E-value=6.7e-13 Score=156.27 Aligned_cols=116 Identities=18% Similarity=0.281 Sum_probs=91.9
Q ss_pred CCCeEEEEcCCCCChhhHHHHhhcCcee-----------eecC------CCCceeeeEEEEEEecCeeEEEEecCCcccc
Q 005504 162 LLPRVAIVGRPNVGKSALFNRLVGGNRA-----------IVVD------EPGVTRDRMYGRSFWGEHEFMLVDTGGVLNV 224 (693)
Q Consensus 162 ~~~~V~ivG~~nvGKSsL~n~l~~~~~~-----------~v~~------~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~ 224 (693)
...+|+|+|+.|+|||||+++|+..... .+.+ ..+.|.......+.|.+..+.+|||||+.++
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df 86 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF 86 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence 3568999999999999999999853211 0111 2356666667778899999999999998641
Q ss_pred cCCchhhhhhhhhhhcccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHHHHHHHHHhhcCCC
Q 005504 225 SKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDK 304 (693)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~i~~~L~~~~~~~ 304 (693)
...+..+++.+|++++|+|+..+...++..+++.+.. .+.
T Consensus 87 --------------------------------------~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~--~~~ 126 (687)
T PRK13351 87 --------------------------------------TGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADR--YGI 126 (687)
T ss_pred --------------------------------------HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh--cCC
Confidence 2445678899999999999999999888888888876 478
Q ss_pred cEEEEecccCCcc
Q 005504 305 FIILAVNKCESPR 317 (693)
Q Consensus 305 p~ivv~NK~D~~~ 317 (693)
|+++|+||+|+..
T Consensus 127 p~iiviNK~D~~~ 139 (687)
T PRK13351 127 PRLIFINKMDRVG 139 (687)
T ss_pred CEEEEEECCCCCC
Confidence 9999999999864
No 497
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.45 E-value=2.5e-13 Score=145.15 Aligned_cols=165 Identities=21% Similarity=0.334 Sum_probs=124.7
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEecCeeEEEEecCCcccccCCchhhhhhhhhhh
Q 005504 160 EHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (693)
Q Consensus 160 ~~~~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~ 239 (693)
....++++|+|+|||||||++|.++... ..|.+++++|+....+.+.+.-..++++||||+.+....+.+
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtrad-vevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN--------- 234 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRAD-DEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRN--------- 234 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccc-cccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhh---------
Confidence 4566899999999999999999888775 678899999999999988888889999999999874332222
Q ss_pred cccCCCCchhhHHHHHhcchHHHHHHHHHHHHh-cCeEEEEEeCC--CCCCHHH-HHHHHHHHhhcCCCcEEEEecccCC
Q 005504 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEE-SCVIIFLVDGQ--AGLTAAD-EEIADWLRKNYMDKFIILAVNKCES 315 (693)
Q Consensus 240 ~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~-adiil~VvD~~--~~~~~~d-~~i~~~L~~~~~~~p~ivv~NK~D~ 315 (693)
.|+.++..++.. -.+|||++|.+ +|.+..+ ..+.+.++..+.++|+|+|+||||.
T Consensus 235 ---------------------~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~ 293 (620)
T KOG1490|consen 235 ---------------------IIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDA 293 (620)
T ss_pred ---------------------HHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccc
Confidence 244555555544 35689999965 5777655 4788888888889999999999998
Q ss_pred ccchhh-----hH-HHHHhcC-CCCccccccCCCCHHHHHHHHHhhc
Q 005504 316 PRKGIM-----QV-SEFWSLG-FSPLPISAISGTGTGELLDLVCSEL 355 (693)
Q Consensus 316 ~~~~~~-----~~-~~~~~~g-~~~v~iSA~~g~gi~~Ll~~i~~~l 355 (693)
...+.. .. .....-| +.++.+|+.+-+|+-++....++.+
T Consensus 294 m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~eegVm~Vrt~ACe~L 340 (620)
T KOG1490|consen 294 MRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQEEGVMDVRTTACEAL 340 (620)
T ss_pred cCccccCHHHHHHHHHHHhccCceEEEecccchhceeeHHHHHHHHH
Confidence 653211 11 2222333 5789999999999988887766654
No 498
>COG1162 Predicted GTPases [General function prediction only]
Probab=99.45 E-value=7.6e-13 Score=136.36 Aligned_cols=141 Identities=24% Similarity=0.306 Sum_probs=97.7
Q ss_pred HhcCeEEEEEeCCCC-CCHHHHHHHHHHHh-hcCCCcEEEEecccCCccchhhh---HHH-HHhcCCCCccccccCCCCH
Q 005504 271 EESCVIIFLVDGQAG-LTAADEEIADWLRK-NYMDKFIILAVNKCESPRKGIMQ---VSE-FWSLGFSPLPISAISGTGT 344 (693)
Q Consensus 271 ~~adiil~VvD~~~~-~~~~d~~i~~~L~~-~~~~~p~ivv~NK~D~~~~~~~~---~~~-~~~~g~~~v~iSA~~g~gi 344 (693)
.+.|-+++|+.+-.+ ++. ..+-++|-- ...+..-++++||+|+....... ... +...|+.++.+||+++.|+
T Consensus 78 ~n~d~~iiIvs~~~P~~~~--~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~~ 155 (301)
T COG1162 78 ANNDQAIIVVSLVDPDFNT--NLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDGL 155 (301)
T ss_pred cccceEEEEEeccCCCCCH--HHHHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCcccH
Confidence 446667777776654 333 223333321 22466667889999998754333 222 3448999999999999999
Q ss_pred HHHHHHHHhhcccccCccchhhhccCCcEEEeecCCCCChhhHHHHHhcCCCceecCCC-------CcccceEEEEEeCC
Q 005504 345 GELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPIS-------GTTRDAIDTEFTGP 417 (693)
Q Consensus 345 ~~Ll~~i~~~l~~~~~~~~~~~~~~~~~~I~ivG~~n~GKSSLin~llg~~~~~v~~~~-------gtT~d~~~~~~~~~ 417 (693)
++|.+.+.. ...+++|.+|||||||+|+|.++....+.++. .||+......+..
T Consensus 156 ~~l~~~l~~------------------~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~- 216 (301)
T COG1162 156 EELAELLAG------------------KITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPG- 216 (301)
T ss_pred HHHHHHhcC------------------CeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCC-
Confidence 998777632 35799999999999999999986655554443 5777776665532
Q ss_pred CCCeEEEEeCccccchhh
Q 005504 418 EGQKFRLIDTAGIRKRAA 435 (693)
Q Consensus 418 ~g~~i~liDTpG~~~~~~ 435 (693)
+| .++||||++.+.-
T Consensus 217 gG---~iiDTPGf~~~~l 231 (301)
T COG1162 217 GG---WIIDTPGFRSLGL 231 (301)
T ss_pred CC---EEEeCCCCCccCc
Confidence 34 8999999988754
No 499
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.44 E-value=2.2e-12 Score=130.13 Aligned_cols=155 Identities=16% Similarity=0.106 Sum_probs=98.5
Q ss_pred CCeEEEEcCCCCChhhHHHHhhcCceeeecCCCCceeeeEEEEEEe--cCeeEEEEecCCcccccCCchhhhhhhhhhhc
Q 005504 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW--GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (693)
Q Consensus 163 ~~~V~ivG~~nvGKSsL~n~l~~~~~~~v~~~~~~T~~~~~~~~~~--~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~ 240 (693)
..+|+++|.+|||||||+++++.... .....+....+.....+.. +...+.+|||+|.....
T Consensus 9 ~~kv~liG~~g~GKTtLi~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~--------------- 72 (215)
T PTZ00132 9 EFKLILVGDGGVGKTTFVKRHLTGEF-EKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFG--------------- 72 (215)
T ss_pred CceEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhh---------------
Confidence 35899999999999999987765431 1111222222222222222 34678999999975321
Q ss_pred ccCCCCchhhHHHHHhcchHHHHHHHHHHHHhcCeEEEEEeCCCCCCHHHH-HHHHHHHhhcCCCcEEEEecccCCccch
Q 005504 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRKG 319 (693)
Q Consensus 241 ~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~-~i~~~L~~~~~~~p~ivv~NK~D~~~~~ 319 (693)
.....++..++++++|+|.+...+.... .+...+.+...+.|+++|+||+|+....
T Consensus 73 -----------------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~ 129 (215)
T PTZ00132 73 -----------------------GLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQ 129 (215)
T ss_pred -----------------------hhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcccc
Confidence 1123456688999999999876554332 2223333333468999999999986432
Q ss_pred h-hhHHH-HHhcCCCCccccccCCCCHHHHHHHHHhhcc
Q 005504 320 I-MQVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (693)
Q Consensus 320 ~-~~~~~-~~~~g~~~v~iSA~~g~gi~~Ll~~i~~~l~ 356 (693)
. ..... ....++.++++||++|.|+++++..|.+.+-
T Consensus 130 ~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ia~~l~ 168 (215)
T PTZ00132 130 VKARQITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLT 168 (215)
T ss_pred CCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 1 11112 2234567899999999999999998887654
No 500
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.44 E-value=1.1e-12 Score=135.97 Aligned_cols=87 Identities=30% Similarity=0.376 Sum_probs=70.7
Q ss_pred EEeecCCCCChhhHHHHHhcCCCceecCCCCcccceEEEEEeCCCCC----------------eEEEEeCccccchhhhc
Q 005504 374 IAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ----------------KFRLIDTAGIRKRAAIA 437 (693)
Q Consensus 374 I~ivG~~n~GKSSLin~llg~~~~~v~~~~gtT~d~~~~~~~~~~g~----------------~i~liDTpG~~~~~~~~ 437 (693)
|+|+|.||||||||+|+|++.+. .++++|+||+++..+.+...+.+ .+.++||||+.+..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a--- 76 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGA--- 76 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCC---
Confidence 58999999999999999999875 89999999999988777653321 49999999997632
Q ss_pred cCCChhhHhHHHHHHHHHhcCCeEEEEeccc
Q 005504 438 SSGSTTEALSVNRAFRAIRRSDVVALVIEAM 468 (693)
Q Consensus 438 ~~~~~~e~~~~~~~~~~i~~aDvvllViDa~ 468 (693)
........+++.+++.+|++++|+|+.
T Consensus 77 ----~~~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 77 ----SKGEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred ----chhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 222334567888999999999999874
Done!