Query 005504
Match_columns 693
No_of_seqs 524 out of 4705
Neff 7.8
Searched_HMMs 29240
Date Tue Mar 26 17:51:55 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005504.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2013-2017//hhsearch_pdb/005504hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hjg_A GTP-binding protein ENG 1.0 1 1 591.6 37.3 432 163-664 3-435 (436)
2 4dcu_A GTP-binding protein ENG 1.0 1 1 576.9 38.0 434 161-664 21-455 (456)
3 1mky_A Probable GTP-binding pr 1.0 1 1 567.4 44.9 436 163-665 1-439 (439)
4 3qq5_A Small GTP-binding prote 1.0 1 1 263.4 -4.7 291 369-693 32-326 (423)
5 3ec1_A YQEH GTPase; atnos1, at 1.0 1 1 190.5 3.3 239 264-538 63-319 (369)
6 4djt_A GTP-binding nuclear pro 1.0 1 1 188.4 8.5 202 369-623 9-217 (218)
7 3gee_A MNME, tRNA modification 1.0 1 1 186.7 9.9 162 370-549 232-397 (476)
8 1mky_A Probable GTP-binding pr 1.0 1 1 186.3 16.3 245 162-529 179-434 (439)
9 1xzp_A Probable tRNA modificat 1.0 1 1 185.8 15.7 188 344-549 216-404 (482)
10 1f60_A Elongation factor EEF1A 1.0 1 1 180.4 3.7 145 164-348 8-203 (458)
No 1
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=1.00 E-value=1 Score=591.60 Aligned_cols=432 Identities=44% Similarity=0.757 Sum_probs=377.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 99599983899973469877626961465288972000179999956726999736886434689602433222221246
Q 005504 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (693)
Q Consensus 163 ~~~I~ivG~~nvGKSsL~n~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (693)
.++|+++|+||||||||+|+|++.+.+++.+++|+|++..++.+.+.+..+.+|||||+.....
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~---------------- 66 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDE---------------- 66 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC-------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCEEEEEEEECCCEEEEEECCCCCCCCH----------------
T ss_conf 8899999999998999999996898504269899846548999999990599998979987665----------------
Q ss_pred CCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHH
Q ss_conf 78984244778872013899999999998618299999599999987999999998603899499971246786302434
Q 005504 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ 322 (693)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~~~~~l~~~~~~~p~iiv~NK~D~~~~~~~~ 322 (693)
.+...+..++..+++.+|+++||+|++.+.+..+.++..++++ .++|+++|+||+|+.... ..
T Consensus 67 --------------~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~--~~~pvilv~NK~D~~~~~-~~ 129 (436)
T 2hjg_A 67 --------------PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLDNTEMR-AN 129 (436)
T ss_dssp --------------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTT--CCSCEEEEEECCCC------C
T ss_pred --------------HHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--CCCCEEEEEECCCCCCCH-HH
T ss_conf --------------5999999999999974889999984788999799999999997--399879999896686435-66
Q ss_pred HHHHHHCCC-CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCEECC
Q ss_conf 898886699-9731335678997889999996501235864112110688579862689998325999982689711037
Q 005504 323 VSEFWSLGF-SPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSP 401 (693)
Q Consensus 323 ~~~~~~~g~-~~v~iSA~~g~gi~~Ll~~I~~~l~~~~~~e~~~~~~~~~~~I~iiG~~n~GKSslin~ll~~~~~~~~~ 401 (693)
..+++.+|+ +++++||.+|.|+++|++.+.+.+++.... ..+...++|+++|+||||||||+|++++.....+++
T Consensus 130 ~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~----~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~ 205 (436)
T 2hjg_A 130 IYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIPET----KYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSN 205 (436)
T ss_dssp CCSSGGGSSCCCEECBTTTTBTHHHHHHHHHHTGGGCCSS----CCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC-
T ss_pred HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCC----CCCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEECC
T ss_conf 7889871899769996768989599999998756732111----112467279997579988779999972877423148
Q ss_pred CCCCCCCEEEEEEECCCCCEEEEEECCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 88752110788985789974899947662101222157972567689999999840785999911655478989999999
Q 005504 402 ISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAER 481 (693)
Q Consensus 402 ~~gtT~d~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~aD~vilViDa~~~~~~~d~~i~~~ 481 (693)
++|+|++.....+.. ++..+.+|||||++++.++. +.++.++..++..+++.+|++++|+|++++.+.++..++..
T Consensus 206 ~~gtT~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~---~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~ 281 (436)
T 2hjg_A 206 VAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVY---ETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGY 281 (436)
T ss_dssp --------CCEEEEE-TTEEEEETTHHHHTCBTTBC---CCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHH
T ss_pred CCCCEEEEEEEEEEE-CCEEEEEEECCCCCCCCCCC---CHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHH
T ss_conf 999616136899998-99189999798847075544---21789999999998875999999982876776899999999
Q ss_pred HHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 99809959999954579999532137999999999971299996999515569998999999999999850157822478
Q 005504 482 IEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVDKERSRRLSTATIN 561 (693)
Q Consensus 482 i~~~~~piIiViNK~Dl~~~~~~~~~~~~~~~i~~~~~~~~~~pii~iSA~~g~gi~~L~~~i~~~~~~~~~~i~t~~Ln 561 (693)
+.+.++|+++|+||||+..... ...+++.+.+.+.+....++|++++||++|.|++++++.+.+.+.++..+++|+.||
T Consensus 282 ~~~~~~~iiiv~NK~Dl~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~~~~~t~~ln 360 (436)
T 2hjg_A 282 AHEAGKAVVIVVNKWDAVDKDE-STMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSLRVQTNVLN 360 (436)
T ss_dssp HHHTTCEEEEEEECGGGSCCCT-THHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTCCCCHHHHH
T ss_pred HHHCCCCEEEEEECCCCCCCCH-HHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 9983996799998912788636-789999999998603579997899815568899999999999999860478879999
Q ss_pred HHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHH
Q ss_conf 99996742259987999940009999850310112111003777752011121101579997999957899989589999
Q 005504 562 QVVQEAVAFKSPPRTRGGRRGRVYYCTQLLLGIFVRSAFRYGALGPLHIKYDLLQAAVRPPTFVFFVNDAKLFPETYRRY 641 (693)
Q Consensus 562 ~~l~~~~~~~~~p~~~~~~~~kl~~~~q~~~~~~~r~~~~~~~~~~~~~~~~~l~~~~~pp~~v~~~n~~~~~~~~y~~~ 641 (693)
+++.+++..+|||.. .++++|++|++| +..+||+||+|+|+++.++++|+||
T Consensus 361 ~~l~~~~~~~~pp~~-~~~~~~i~y~~q---------------------------~~~~pp~~~~~~n~~~~~~~~y~r~ 412 (436)
T 2hjg_A 361 DVIMDAVAMNPTPTH-NGSRLKIYYATQ---------------------------VSVKPPSFVVFVNDPELMHFSYERF 412 (436)
T ss_dssp HHHHHHHHHSCCCEE-TTEECCEEEEEE---------------------------EETTTTEEEEEESCGGGCCHHHHHH
T ss_pred HHHHHHHHHCCCCCC-CCCCEEEEEEEC---------------------------CCCCCCEEEEEECCCCCCCHHHHHH
T ss_conf 999999985799866-896114896766---------------------------8999998999968855598789999
Q ss_pred HHHHHHHHCCCCCCCEEEEEEEC
Q ss_conf 99999634299985289999523
Q 005504 642 MEKQLRADAGFSGTPIRLLWRSR 664 (693)
Q Consensus 642 l~~~~~~~~~~~g~pi~~~~~~~ 664 (693)
|+|++|+.|+|.||||+|.||.+
T Consensus 413 l~~~~r~~~~~~g~p~~~~~~~~ 435 (436)
T 2hjg_A 413 LENRIRDAFGFEGTPIKIFARAR 435 (436)
T ss_dssp HHHHHHHHHCCTTSCCEEEEEEC
T ss_pred HHHHHHHHCCCCCEEEEEEEECC
T ss_conf 99999987699742389999648
No 2
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=1.00 E-value=1 Score=576.90 Aligned_cols=434 Identities=44% Similarity=0.747 Sum_probs=380.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 89995999838999734698776269614652889720001799999567269997368864346896024332222212
Q 005504 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (693)
Q Consensus 161 ~~~~~I~ivG~~nvGKSsL~n~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 240 (693)
...++|+|+|++|||||||+|+|++.+.+.+.+.+|+|+++....+.+.+..+.+|||||+....
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~--------------- 85 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD--------------- 85 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC--------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEECCCEEEEEECCCCCCCC---------------
T ss_conf 59998999999998399999999677874448999965657999999789369999788877761---------------
Q ss_pred CCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHH
Q ss_conf 46789842447788720138999999999986182999995999999879999999986038994999712467863024
Q 005504 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI 320 (693)
Q Consensus 241 ~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~~~~~l~~~~~~~p~iiv~NK~D~~~~~~ 320 (693)
..+...+..++..++..+|++|||+|++.+++..+.++.+++++ .++|+++|+||+|+....
T Consensus 86 ---------------~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~--~~~pvilV~NK~D~~~~~- 147 (456)
T 4dcu_A 86 ---------------EPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLDNTEMR- 147 (456)
T ss_dssp ----------------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT--CCSCEEEEEECC-------
T ss_pred ---------------HHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--CCCCEEEEEECCCCHHHH-
T ss_conf ---------------17899999999866865999999971788997578999999997--599889999792240246-
Q ss_pred HHHHHHHHCCC-CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCEE
Q ss_conf 34898886699-97313356789978899999965012358641121106885798626899983259999826897110
Q 005504 321 MQVSEFWSLGF-SPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIV 399 (693)
Q Consensus 321 ~~~~~~~~~g~-~~v~iSA~~g~gi~~Ll~~I~~~l~~~~~~e~~~~~~~~~~~I~iiG~~n~GKSslin~ll~~~~~~~ 399 (693)
....+++.+++ .++++||.+|.|+.+|++.+...++.... .......++|+++|.+|+|||||+|++++.....+
T Consensus 148 ~~~~e~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~----~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~ 223 (456)
T 4dcu_A 148 ANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIPE----TKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIV 223 (456)
T ss_dssp ---CCSGGGSSSSEEECCTTTCTTHHHHHHHHHTTGGGSCS----SCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEE
T ss_pred HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCC----CCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 66799997599954886310254347899998764343212----33345551467732899987899999857785025
Q ss_pred CCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHH
Q ss_conf 37887521107889857899748999476621012221579725676899999998407859999116554789899999
Q 005504 400 SPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIA 479 (693)
Q Consensus 400 ~~~~gtT~d~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~aD~vilViDa~~~~~~~d~~i~ 479 (693)
++++|+|++.....+.. ++..+.+|||||+++..++. ...+.++..++..+++.+|++++|+|++++++.++..++
T Consensus 224 ~~~~gtt~~~~~~~~~~-~~~~~~l~DT~G~~~~~~~~---~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~ 299 (456)
T 4dcu_A 224 SNVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVY---ETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIA 299 (456)
T ss_dssp CC------CTTSEEEEE-TTEEEEETTGGGTTTBTTBC---CCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHH
T ss_pred CCCCCEEEEEEEEEEEE-CCCEEEEEECCCCCCCCCCC---HHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHH
T ss_conf 79997488779999998-99639999899998676642---378899999999988539999999958877679999999
Q ss_pred HHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 99998099599999545799995321379999999999712999969995155699989999999999998501578224
Q 005504 480 ERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVDKERSRRLSTAT 559 (693)
Q Consensus 480 ~~i~~~~~piIiViNK~Dl~~~~~~~~~~~~~~~i~~~~~~~~~~pii~iSA~~g~gi~~L~~~i~~~~~~~~~~i~t~~ 559 (693)
.++.+.++|+|+|+||||+..... ...+++.+.+.+.+....++|++++||++|.|++++++.+.+.+.++.++++++.
T Consensus 300 ~~~~~~~~~~ilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~~~t~~ 378 (456)
T 4dcu_A 300 GYAHEAGKAVVIVVNKWDAVDKDE-STMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSLRVQTNV 378 (456)
T ss_dssp HHHHHTTCEEEEEEECGGGSCCCS-SHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTCCCCHHH
T ss_pred HHHHHCCCCEEEEEECHHCCCCCH-HHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 999983998799999744489746-8999999999986335899988998298996989999999999998446689799
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCHHHH
Q ss_conf 78999967422599879999400099998503101121110037777520111211015799979999578999895899
Q 005504 560 INQVVQEAVAFKSPPRTRGGRRGRVYYCTQLLLGIFVRSAFRYGALGPLHIKYDLLQAAVRPPTFVFFVNDAKLFPETYR 639 (693)
Q Consensus 560 Ln~~l~~~~~~~~~p~~~~~~~~kl~~~~q~~~~~~~r~~~~~~~~~~~~~~~~~l~~~~~pp~~v~~~n~~~~~~~~y~ 639 (693)
||+++.+++..+|||. .+++++|++|++| +.++||+||+|+|+++.++++|+
T Consensus 379 ln~~l~~~~~~~~pp~-~~~~~~ki~y~~q---------------------------~~~~pp~~~~~~n~~~~~~~~y~ 430 (456)
T 4dcu_A 379 LNDVIMDAVAMNPTPT-HNGSRLKIYYATQ---------------------------VSVKPPSFVVFVNDPELMHFSYE 430 (456)
T ss_dssp HHHHHHHHHHHSCCCE-ETTEECCEEEEEE---------------------------EETTTTEEEEEESCGGGSCHHHH
T ss_pred HHHHHHHHHHHCCCCC-CCCCEEEEEEEEC---------------------------CCCCCCEEEEEECCCCCCCHHHH
T ss_conf 9999999997179997-7993434897865---------------------------89999889999668555997899
Q ss_pred HHHHHHHHHHCCCCCCCEEEEEEEC
Q ss_conf 9999999634299985289999523
Q 005504 640 RYMEKQLRADAGFSGTPIRLLWRSR 664 (693)
Q Consensus 640 ~~l~~~~~~~~~~~g~pi~~~~~~~ 664 (693)
|||+|+||+.|+|.||||+|.||.+
T Consensus 431 r~l~~~~r~~~~~~g~p~~~~~~~~ 455 (456)
T 4dcu_A 431 RFLENRIRDAFGFEGTPIKIFARAR 455 (456)
T ss_dssp HHHHHHHHHHHCCTTCCCEEEEEC-
T ss_pred HHHHHHHHHHCCCCCEEEEEEEECC
T ss_conf 9999999986799743389999648
No 3
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=1.00 E-value=1 Score=567.43 Aligned_cols=436 Identities=36% Similarity=0.623 Sum_probs=368.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 99599983899973469877626961465288972000179999956726999736886434689602433222221246
Q 005504 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (693)
Q Consensus 163 ~~~I~ivG~~nvGKSsL~n~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 242 (693)
+|+|+|+|+||||||||+|+|++.+.+++.++||+|++..++.+.+.+..+.+|||||+.....
T Consensus 1 ~~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~---------------- 64 (439)
T 1mky_A 1 MATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQ---------------- 64 (439)
T ss_dssp -CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGG----------------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCEECCCCCCCCCEEEEEEEECCEEEEEEECCCCCCCCC----------------
T ss_conf 9889998899998999999985888713069999754511699999992899997988465564----------------
Q ss_pred CCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHH
Q ss_conf 78984244778872013899999999998618299999599999987999999998603899499971246786302434
Q 005504 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ 322 (693)
Q Consensus 243 ~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~~~~~l~~~~~~~p~iiv~NK~D~~~~~~~~ 322 (693)
..+...+..++..+++.+|+++||+|++.+++..+..+.+++++ .++|+++|+||+|+.......
T Consensus 65 -------------~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~--~~~p~ilv~NK~D~~~~~~~~ 129 (439)
T 1mky_A 65 -------------DIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRK--STVDTILVANKAENLREFERE 129 (439)
T ss_dssp -------------GCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHH--HTCCEEEEEESCCSHHHHHHH
T ss_pred -------------CHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--CCCCEEEEEECCCCCCCCHHH
T ss_conf -------------05899999999999986999999987998989799999999987--599989999598984336778
Q ss_pred H-HHHHHCCC-CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCEEC
Q ss_conf 8-98886699-973133567899788999999650123586411211068857986268999832599998268971103
Q 005504 323 V-SEFWSLGF-SPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVS 400 (693)
Q Consensus 323 ~-~~~~~~g~-~~v~iSA~~g~gi~~Ll~~I~~~l~~~~~~e~~~~~~~~~~~I~iiG~~n~GKSslin~ll~~~~~~~~ 400 (693)
. .+++.+|+ +++++||.||.|+++|++.|.+.+++..............++|+++|++|||||||+|++++.....++
T Consensus 130 ~~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~ 209 (439)
T 1mky_A 130 VKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVS 209 (439)
T ss_dssp THHHHGGGSSCSCEECBTTTTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEEC
T ss_pred HHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCHHCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 99999963899779996647899799999999855532200010012346716999788999879999998387652468
Q ss_pred CCCCCCCCEEEEEEECCCCCEEEEEECCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHH
Q ss_conf 78875211078898578997489994766210122215797256768999999984078599991165547898999999
Q 005504 401 PISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAE 480 (693)
Q Consensus 401 ~~~gtT~d~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~aD~vilViDa~~~~~~~d~~i~~ 480 (693)
+++|+|++.....+.+ ++..+.+|||||++++..... ...+.+...++..+++.+|++++|+|+..+.+.++..+..
T Consensus 210 ~~~gtT~d~~~~~i~~-~g~~~~l~Dt~G~~~~~~~~~--~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~ 286 (439)
T 1mky_A 210 PIPGTTRDPVDDEVFI-DGRKYVFVDTAGLRRKSRVEP--RTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAG 286 (439)
T ss_dssp CCC------CCEEEEE-TTEEEEESSCSCC-------------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHH
T ss_pred CCCCCCCCCEEEEEEE-CCEEEEEEECCCCCCCCCCCH--HHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHH
T ss_conf 9999748735799999-997899999989764455650--3599999999998885399999998588788989999999
Q ss_pred HHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 99980995999995457999953213799999999997129999699951556999899999999999985015782247
Q 005504 481 RIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVDKERSRRLSTATI 560 (693)
Q Consensus 481 ~i~~~~~piIiViNK~Dl~~~~~~~~~~~~~~~i~~~~~~~~~~pii~iSA~~g~gi~~L~~~i~~~~~~~~~~i~t~~L 560 (693)
.+...++|+++|+||||+.+... ...+++.+.+.+.+....++|++++||++|.|++++++.+.+.+.++..+++|+.|
T Consensus 287 ~l~~~~~~~ilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~i~t~~l 365 (439)
T 1mky_A 287 LMERRGRASVVVFNKWDLVVHRE-KRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASYTTKVPSSAI 365 (439)
T ss_dssp HHHHTTCEEEEEEECGGGSTTGG-GCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHHTCCCCHHHH
T ss_pred HHHHCCCCEEEEEECCCCCCCHH-HHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 99982998899998902898403-68999999999871427999679997999989999999999999860561787999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHH
Q ss_conf 89999674225998799994000999985031011211100377775201112110157999799995789998958999
Q 005504 561 NQVVQEAVAFKSPPRTRGGRRGRVYYCTQLLLGIFVRSAFRYGALGPLHIKYDLLQAAVRPPTFVFFVNDAKLFPETYRR 640 (693)
Q Consensus 561 n~~l~~~~~~~~~p~~~~~~~~kl~~~~q~~~~~~~r~~~~~~~~~~~~~~~~~l~~~~~pp~~v~~~n~~~~~~~~y~~ 640 (693)
|+++.+++..+||| ++.|++|++| +.++||+||+|+|+++.++++|+|
T Consensus 366 n~~l~~~~~~~~~~-----~~~ki~y~~q---------------------------~~~~p~~~~~~~n~~~~~~~~y~r 413 (439)
T 1mky_A 366 NSALQKVLAFTNLP-----RGLKIFFGVQ---------------------------VDIKPPTFLFFVNSIEKVKNPQKI 413 (439)
T ss_dssp HHHHHHHHTTCCCS-----TTCCEEEEEE---------------------------EETTTTEEEEEESCSTTCCHHHHH
T ss_pred HHHHHHHHHCCCCC-----CCCEEEEEEE---------------------------CCCCCCEEEEEECCCCCCCHHHHH
T ss_conf 99999999708999-----8707999995---------------------------689999899998274339979999
Q ss_pred HHHHHHHH-HCCCCCCCEEEEEEECC
Q ss_conf 99999963-42999852899995237
Q 005504 641 YMEKQLRA-DAGFSGTPIRLLWRSRR 665 (693)
Q Consensus 641 ~l~~~~~~-~~~~~g~pi~~~~~~~~ 665 (693)
||+|++|+ .|+|.|+||++.||.++
T Consensus 414 ~l~~~~r~~~~~~~~~pi~~~~~~~~ 439 (439)
T 1mky_A 414 FLRKLIRDYVFPFEGSPIFLKFKRSR 439 (439)
T ss_dssp HHHHHHHHHTCCCTTCCCEEEEEECC
T ss_pred HHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf 99999878618999887899994589
No 4
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=1.00 E-value=1 Score=263.39 Aligned_cols=291 Identities=21% Similarity=0.250 Sum_probs=223.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCEECCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCHHHHCCCCCHHHHHHH
Q ss_conf 68857986268999832599998268971103788752110788985789974899947662101222157972567689
Q 005504 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (693)
Q Consensus 369 ~~~~~I~iiG~~n~GKSslin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~e~~~~ 448 (693)
...++|+++|++|+|||||+|++++.....++..+|+|.+.....+.+.+...+.+|||||+.++.... ....
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~-------~~~~ 104 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELG-------RLRV 104 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTC-------CCCH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEECCCCCCCCCHH-------HHHH
T ss_conf 898899998999999999999997578875578798246357999997798859999895977644125-------7899
Q ss_pred HHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 99999984078599991165547898999999999809959999954579999532137999999999971299996999
Q 005504 449 NRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVY 528 (693)
Q Consensus 449 ~~~~~~i~~aD~vilViDa~~~~~~~d~~i~~~i~~~~~piIiViNK~Dl~~~~~~~~~~~~~~~i~~~~~~~~~~pii~ 528 (693)
.++..+++.+|++++|+|+ +...++..++..+.+.++|+++|+||+|+...... ...+.+....+.++++
T Consensus 105 ~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~--------~~~~~l~~~~g~~v~~ 174 (423)
T 3qq5_A 105 EKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE--------ELKGLYESRYEAKVLL 174 (423)
T ss_dssp HHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT--------HHHHHSSCCTTCCCCC
T ss_pred HHHHHHHHCCCEEEEEEEC--CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHH--------HHHHHHHHHCCCCEEE
T ss_conf 9999988509999999969--87199999999998569997999969579885089--------9999999971997899
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-HHCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHCCCCCCC
Q ss_conf 515569998999999999999850157822478999967-4225998799994000999985031011211100377775
Q 005504 529 STAIAGQSVDKIIVAAEMVDKERSRRLSTATINQVVQEA-VAFKSPPRTRGGRRGRVYYCTQLLLGIFVRSAFRYGALGP 607 (693)
Q Consensus 529 iSA~~g~gi~~L~~~i~~~~~~~~~~i~t~~Ln~~l~~~-~~~~~~p~~~~~~~~kl~~~~q~~~~~~~r~~~~~~~~~~ 607 (693)
+||++|.|++++++.+.+..... ...+ .+..++... ......|.....+.+++..+++ +++|+.++.++...
T Consensus 175 vSAktg~gI~eL~~~L~~~l~~~-~e~~--l~~dLv~~gd~v~lv~pid~~~pkgr~ilp~~----~~ird~l~~~~~~~ 247 (423)
T 3qq5_A 175 VSALQKKGFDDIGKTISEILPGD-EEIP--YLGDLIDGGDLVILVVPIDLGAPKGRLIMPQV----HAIREALDREAIAL 247 (423)
T ss_dssp CSSCCTTSTTTHHHHHHHHSCCC-CCCC--SCSCCCCTTCCEEEECCCSCCSSTTCCCHHHH----HHHHHHHHTTCEEE
T ss_pred EECCCCCCHHHHHHHHHHHHHHH-CCCC--CHHHCCCCCCEEEEEEECCCCCCCCCCCCCHH----HHHHHHHHHHHHHH
T ss_conf 98999989999999999960140-2675--04430366763899762234576774206658----89999998656888
Q ss_pred CHH---HHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCHHCCCCCC
Q ss_conf 201---11211015799979999578999895899999999963429998528999952376410015531000013576
Q 005504 608 LHI---KYDLLQAAVRPPTFVFFVNDAKLFPETYRRYMEKQLRADAGFSGTPIRLLWRSRRKMEMKEGKSASRTQANLVP 684 (693)
Q Consensus 608 ~~~---~~~~l~~~~~pp~~v~~~n~~~~~~~~y~~~l~~~~~~~~~~~g~pi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (693)
++. +...|+....+|.+| ++++|.+.+++.. .......|++.++| +|++++.++...|+.+++.|.+
T Consensus 248 ~~~~~~l~~~l~~l~~~~~lv--~tdsq~~~~v~~~-------~p~~~~~t~~s~l~-a~~kG~~~~~~~g~~~~~~~~~ 317 (423)
T 3qq5_A 248 VVKERELRYVMENIGMKPKLV--ITDSQVAMKVASD-------VPEDVELTTFSIVE-SRYRGDLAYFVESVRKIEELED 317 (423)
T ss_dssp ECCSTTHHHHHHHCSSCCSCC--CBCTTHHHHHHHT-------CCCSSSCCCBHHHH-HHHSSCSHHHHHHHHTTTTCCT
T ss_pred HHHHHHHHHHHHHCCCCCCEE--EECCHHHHHHHCC-------CCCCCCCCCHHHHH-HCCCCCHHHHHHHHHHHHHCCC
T ss_conf 753999999998558996689--9464788887544-------77777866088886-4048879999999999974899
Q ss_pred CCCCCCCCC
Q ss_conf 773134469
Q 005504 685 RDRKVASST 693 (693)
Q Consensus 685 ~~~~~~~~~ 693 (693)
||+|||++.
T Consensus 318 gd~v~~~e~ 326 (423)
T 3qq5_A 318 GDTVVIMEG 326 (423)
T ss_dssp TCEEEEECC
T ss_pred CCEEEEECC
T ss_conf 998998226
No 5
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=1.00 E-value=1 Score=190.55 Aligned_cols=239 Identities=18% Similarity=0.171 Sum_probs=157.4
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHH-----HHH-H-HHHHCCC---CC
Q ss_conf 999999986182999995999999879999999986038994999712467863024-----348-9-8886699---97
Q 005504 264 RQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI-----MQV-S-EFWSLGF---SP 333 (693)
Q Consensus 264 ~~~~~~i~~adiil~VvD~~~~~~~~d~~~~~~l~~~~~~~p~iiv~NK~D~~~~~~-----~~~-~-~~~~~g~---~~ 333 (693)
.........++++++|+|+++........+.++ ..++|+++|+||+|+..... ... . .+...|+ .+
T Consensus 63 ~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~----l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v 138 (369)
T 3ec1_A 63 SMLHRIGESKALVVNIVDIFDFNGSFIPGLPRF----AADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDV 138 (369)
T ss_dssp HHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHH----CTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEE
T ss_pred HHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHH----HCCCCEEEEEECHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCE
T ss_conf 999976236868999997988777540679998----4799789999974308975688999999999999769985408
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCCCEEEEECCCCCCHHHHHHHHHCC-----CCCEECCCCCCCCC
Q ss_conf 3133567899788999999650123586411211068857986268999832599998268-----97110378875211
Q 005504 334 LPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGE-----DRTIVSPISGTTRD 408 (693)
Q Consensus 334 v~iSA~~g~gi~~Ll~~I~~~l~~~~~~e~~~~~~~~~~~I~iiG~~n~GKSslin~ll~~-----~~~~~~~~~gtT~d 408 (693)
+++||.+|.|+++|++.+...... .+++++|.+|+|||||+|++++. ....++..+|+|++
T Consensus 139 ~~iSA~~g~gi~~L~~~I~~~~~~--------------~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~ 204 (369)
T 3ec1_A 139 CLVSAAKGIGMAKVMEAINRYREG--------------GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLD 204 (369)
T ss_dssp EECBTTTTBTHHHHHHHHHHHHTT--------------SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCC--------------CCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEECCCCCEEEE
T ss_conf 999788898989999999862346--------------718999179996489999987651588652020589976776
Q ss_pred EEEEEEECCCCCEEEEEECCCCCCHHHHCCCCCHHHHHHHHHHHHHH---HCCCEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 07889857899748999476621012221579725676899999998---407859999116554789899999999980
Q 005504 409 AIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAI---RRSDVVALVIEAMACITEQDCRIAERIEQE 485 (693)
Q Consensus 409 ~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i---~~aD~vilViDa~~~~~~~d~~i~~~i~~~ 485 (693)
.....+. ..+.++||||+....... .+.....+..+ ...+.+++++++.+......+..+.++...
T Consensus 205 ~~~~~~~----~~~~liDtPG~~~~~~~~-------~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~ 273 (369)
T 3ec1_A 205 MIEIPLE----SGATLYDTPGIINHHQMA-------HFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGG 273 (369)
T ss_dssp EEEEECS----TTCEEEECCSCCCCSSGG-------GGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESS
T ss_pred EEEEEEC----CCEEEEECCCCCCHHHHH-------HHHHHHHHHHHHCCCCCCCEEEEECCCCEEEECCEEEEEECCCC
T ss_conf 6999807----974999688857677888-------88769999998605556845999858966778887899872689
Q ss_pred CCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHH
Q ss_conf 99599999545799995321379999999999712999969995155699989
Q 005504 486 GKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVD 538 (693)
Q Consensus 486 ~~piIiViNK~Dl~~~~~~~~~~~~~~~i~~~~~~~~~~pii~iSA~~g~gi~ 538 (693)
+.|+++++||+|.+........ .+.+.+.+ +..+.+.++.+..++.
T Consensus 274 ~~~~~~v~~k~d~~~~~~~~~~---~~~~~~~~----g~~l~p~~~~~~~~~~ 319 (369)
T 3ec1_A 274 RRSFVCYMANELTVHRTKLEKA---DSLYANQL----GELLSPPSKRYAAEFP 319 (369)
T ss_dssp SEEEEEEECTTSCEEEEEGGGH---HHHHHHHB----TTTBCSSCGGGTTTCC
T ss_pred CCEEEEEECCCCCCCCCCHHHH---HHHHHHHC----CCCCCCCCCHHHHHCC
T ss_conf 9559999458754454437779---99999963----9724899816666555
No 6
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=1.00 E-value=1 Score=188.38 Aligned_cols=202 Identities=17% Similarity=0.173 Sum_probs=145.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC-EECCCCCCCCCEEEEEEECCCC--CEEEEEECCCCCCHHHHCCCCCHHHH
Q ss_conf 68857986268999832599998268971-1037887521107889857899--74899947662101222157972567
Q 005504 369 NRIPAIAIVGRPNVGKSSILNALVGEDRT-IVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEA 445 (693)
Q Consensus 369 ~~~~~I~iiG~~n~GKSslin~ll~~~~~-~~~~~~gtT~d~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~e~ 445 (693)
...++|+++|.+|+|||||+|++++.... ......+++..... +...++ ..+.+|||||+.++....
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~--~~~~~~~~~~~~l~Dt~G~~~~~~~~-------- 78 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVT--FLDDQGNVIKFNVWDTAGQEKKAVLK-------- 78 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEE--EEBTTSCEEEEEEEEECSGGGTSCCC--------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEE--EEECCCCEEEEEEEECCCCHHHCHHH--------
T ss_conf 57427999999997899999999659987777884240258999--98079968999998458735423577--------
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCHHHH-HHHHHHHH---HCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 6899999998407859999116554789899-99999998---0995999995457999953213799999999997129
Q 005504 446 LSVNRAFRAIRRSDVVALVIEAMACITEQDC-RIAERIEQ---EGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRAL 521 (693)
Q Consensus 446 ~~~~~~~~~i~~aD~vilViDa~~~~~~~d~-~i~~~i~~---~~~piIiViNK~Dl~~~~~~~~~~~~~~~i~~~~~~~ 521 (693)
...++.+|++++|+|++++.+.++. .|+..+.. .++|+++|+||+|+....... .... ..+...
T Consensus 79 ------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-----~~~~-~~~~~~ 146 (218)
T 4djt_A 79 ------DVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKIS-----KKLV-MEVLKG 146 (218)
T ss_dssp ------HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CC-----HHHH-HHHTTT
T ss_pred ------HHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCC-----HHHH-HHHHHH
T ss_conf ------8886159899999969788999999999999998648999789999898775245459-----9999-999998
Q ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHC
Q ss_conf 99969995155699989999999999998501578224789999674225998799994000999985031011211100
Q 005504 522 DWAPIVYSTAIAGQSVDKIIVAAEMVDKERSRRLSTATINQVVQEAVAFKSPPRTRGGRRGRVYYCTQLLLGIFVRSAFR 601 (693)
Q Consensus 522 ~~~pii~iSA~~g~gi~~L~~~i~~~~~~~~~~i~t~~Ln~~l~~~~~~~~~p~~~~~~~~kl~~~~q~~~~~~~r~~~~ 601 (693)
.+.+++++||++|.|++++++.+.+....+..+..++.+|.++.+.....++|.. ..+++|++|
T Consensus 147 ~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~y~~q------------ 210 (218)
T 4djt_A 147 KNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVNLEPTEVNYDYHSPEE----SKYIDYMEQ------------ 210 (218)
T ss_dssp CCCEEEEEBTTTTBTTTHHHHHHHHHHHCCTTCCBCSCCCCCBCCCCCCCCCC---------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHH----HHHHHHHHH------------
T ss_conf 5992899966999798999999999986142224346667678755567458233----456899999------------
Q ss_pred CCCCCCCHHHHHHHHCCCCCCE
Q ss_conf 3777752011121101579997
Q 005504 602 YGALGPLHIKYDLLQAAVRPPT 623 (693)
Q Consensus 602 ~~~~~~~~~~~~~l~~~~~pp~ 623 (693)
+..+|||
T Consensus 211 ---------------~~~~pp~ 217 (218)
T 4djt_A 211 ---------------ASKMAPE 217 (218)
T ss_dssp ----------------------
T ss_pred ---------------HHCCCCC
T ss_conf ---------------8613789
No 7
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=1.00 E-value=1 Score=186.70 Aligned_cols=162 Identities=27% Similarity=0.396 Sum_probs=127.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCEECCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCHHHHCCCCCHHHHHHHH
Q ss_conf 88579862689998325999982689711037887521107889857899748999476621012221579725676899
Q 005504 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (693)
Q Consensus 370 ~~~~I~iiG~~n~GKSslin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~e~~~~~ 449 (693)
..++|+++|.||+|||||+|++++.+...+.+++|+|++.....+.+ ++..+.+|||||+++.. +..+.+.+.
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~-~g~~l~liDT~G~~~~~------~~ve~~gi~ 304 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIH-DKTMFRLTDTAGLREAG------EEIEHEGIR 304 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEE-TTEEEEEEC-----------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEE-CCEEEEEEECCCCCCCH------HHHHHHHHH
T ss_conf 89889999999997999999996789732379998027789999997-89189999898987630------289999999
Q ss_pred HHHHHHHCCCEEEEEECCCCCCCH----HHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 999998407859999116554789----8999999999809959999954579999532137999999999971299996
Q 005504 450 RAFRAIRRSDVVALVIEAMACITE----QDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVREKLRALDWAP 525 (693)
Q Consensus 450 ~~~~~i~~aD~vilViDa~~~~~~----~d~~i~~~i~~~~~piIiViNK~Dl~~~~~~~~~~~~~~~i~~~~~~~~~~p 525 (693)
++..+++.+|++++|+|++++.+. .+..++..+. ++|+++|+||+|+....... .+.+.+. .+.+
T Consensus 305 ~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~~-----~~~l~~~----~~~~ 373 (476)
T 3gee_A 305 RSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADAL-----IRAIADG----TGTE 373 (476)
T ss_dssp ---CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHHH-----HHHHHHH----HTSC
T ss_pred HHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCC--CCCEEEEEECCCCCCCCCHH-----HHHHHHC----CCCC
T ss_conf 99851046999999997988752445689999999669--99879999895799863314-----8999855----7986
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 999515569998999999999999
Q 005504 526 IVYSTAIAGQSVDKIIVAAEMVDK 549 (693)
Q Consensus 526 ii~iSA~~g~gi~~L~~~i~~~~~ 549 (693)
++++||++|.|++++++.+.+...
T Consensus 374 ~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 374 VIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp EEECBTTTTBSHHHHHHHHTHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 699997788899999999999986
No 8
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=1.00 E-value=1 Score=186.28 Aligned_cols=245 Identities=23% Similarity=0.352 Sum_probs=169.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 99959998389997346987762696146528897200017999995672699973688643468960243322222124
Q 005504 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (693)
Q Consensus 162 ~~~~I~ivG~~nvGKSsL~n~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 241 (693)
..++|+++|++|||||||+|+|++...+.+++.+|+|++...+.+.++|..+.+|||||+........+..+.
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~------- 251 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEK------- 251 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CC-------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCHHHHHH-------
T ss_conf 6716999788999879999998387652468999974873579999999789999998976445565035999-------
Q ss_pred CCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHH
Q ss_conf 67898424477887201389999999999861829999959999998799999999860389949997124678630243
Q 005504 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM 321 (693)
Q Consensus 242 ~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~~d~~~~~~l~~~~~~~p~iiv~NK~D~~~~~~~ 321 (693)
+. ...+..++..+|++++|+|++.+.+..+..+..++.. .++|+++|+||+|+......
T Consensus 252 ----------------~~---~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~--~~~~~ilv~NK~Dl~~~~~~ 310 (439)
T 1mky_A 252 ----------------YS---NYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMER--RGRASVVVFNKWDLVVHREK 310 (439)
T ss_dssp ----------------SC---CHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH--TTCEEEEEEECGGGSTTGGG
T ss_pred ----------------HH---HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--CCCCEEEEEECCCCCCCHHH
T ss_conf ----------------99---9999988853999999985887889899999999998--29988999989028984036
Q ss_pred ---HH-----HHHHHC-CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf ---48-----988866-999731335678997889999996501235864112110688579862689998325999982
Q 005504 322 ---QV-----SEFWSL-GFSPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALV 392 (693)
Q Consensus 322 ---~~-----~~~~~~-g~~~v~iSA~~g~gi~~Ll~~I~~~l~~~~~~e~~~~~~~~~~~I~iiG~~n~GKSslin~ll 392 (693)
.. ..+... +.+++++||.+|.|+++|++.+.+.+.... .++ +|+.+|+++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~------------~~i---------~t~~ln~~l 369 (439)
T 1mky_A 311 RYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASYT------------TKV---------PSSAINSAL 369 (439)
T ss_dssp CHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHHT------------CCC---------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHC------------CCC---------CHHHHHHHH
T ss_conf 89999999998714279996799979999899999999999998605------------617---------879999999
Q ss_pred CCCCCEECCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEEC-CCCCC
Q ss_conf 68971103788752110788985789974899947662101222157972567689999999840785999911-65547
Q 005504 393 GEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIE-AMACI 471 (693)
Q Consensus 393 ~~~~~~~~~~~gtT~d~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~e~~~~~~~~~~i~~aD~vilViD-a~~~~ 471 (693)
++... ..+.+ . .. ++. |... +..
T Consensus 370 ~~~~~-~~~~~-----------~--~~-ki~---------------------------------------y~~q~~~~-- 393 (439)
T 1mky_A 370 QKVLA-FTNLP-----------R--GL-KIF---------------------------------------FGVQVDIK-- 393 (439)
T ss_dssp HHHHT-TCCCS-----------T--TC-CEE---------------------------------------EEEEEETT--
T ss_pred HHHHH-CCCCC-----------C--CC-EEE---------------------------------------EEEECCCC--
T ss_conf 99997-08999-----------8--70-799---------------------------------------99956899--
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHH-HHHCCCCCCEEEE
Q ss_conf 898999999999809959999954579999532137999999999-9712999969995
Q 005504 472 TEQDCRIAERIEQEGKGCLIVVNKWDTIPNKNQQTATYYEQDVRE-KLRALDWAPIVYS 529 (693)
Q Consensus 472 ~~~d~~i~~~i~~~~~piIiViNK~Dl~~~~~~~~~~~~~~~i~~-~~~~~~~~pii~i 529 (693)
...+++.+||+|+++.. ...++.+.+++ .|.+. +.|+...
T Consensus 394 --------------p~~~~~~~n~~~~~~~~---y~r~l~~~~r~~~~~~~-~~pi~~~ 434 (439)
T 1mky_A 394 --------------PPTFLFFVNSIEKVKNP---QKIFLRKLIRDYVFPFE-GSPIFLK 434 (439)
T ss_dssp --------------TTEEEEEESCSTTCCHH---HHHHHHHHHHHHTCCCT-TCCCEEE
T ss_pred --------------CCEEEEEECCCCCCCHH---HHHHHHHHHHHHHCCCC-CCCEEEE
T ss_conf --------------99899998274339979---99999999878618999-8878999
No 9
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=1.00 E-value=1 Score=185.75 Aligned_cols=188 Identities=35% Similarity=0.512 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHCCCCCCCCCHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCEECCCCCCCCCEEEEEEECCCCCEEE
Q ss_conf 78899999965012358641121106885798626899983259999826897110378875211078898578997489
Q 005504 344 TGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFR 423 (693)
Q Consensus 344 i~~Ll~~I~~~l~~~~~~e~~~~~~~~~~~I~iiG~~n~GKSslin~ll~~~~~~~~~~~gtT~d~~~~~~~~~~~~~i~ 423 (693)
+...+..+...+..........+.....++|+++|.||+|||||+|++++.+..++.+++|||++.....+.+ ++..+.
T Consensus 216 i~~~~~~l~~eL~~l~~~~~~~~~~r~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~-~g~~~~ 294 (482)
T 1xzp_A 216 VVTRLERIKEKLTEELKKADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVI-RGILFR 294 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEE-TTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEC-CCEEEE
T ss_conf 9999999999999998755543320489889999969985999999997789774478898146468899940-984799
Q ss_pred EEECCCCC-CHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC
Q ss_conf 99476621-01222157972567689999999840785999911655478989999999998099599999545799995
Q 005504 424 LIDTAGIR-KRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDCRIAERIEQEGKGCLIVVNKWDTIPNK 502 (693)
Q Consensus 424 liDTpG~~-~~~~~~~~~~~~e~~~~~~~~~~i~~aD~vilViDa~~~~~~~d~~i~~~i~~~~~piIiViNK~Dl~~~~ 502 (693)
+|||||++ +.. +..+.+...+++.+++.+|++++|+|++++.+.++..++..+ .++|+++|+||+|+....
T Consensus 295 l~DTaG~~~~~~------~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~~~ 366 (482)
T 1xzp_A 295 IVDTAGVRSETN------DLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEKI 366 (482)
T ss_dssp EEESSCCCSSCC------TTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCCC
T ss_pred EEECCCCCCCCH------HHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHH--CCCCEEEEEECCCCCCCC
T ss_conf 997998644431------367778899999876220489999258888898799999870--679879999885666546
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 32137999999999971299996999515569998999999999999
Q 005504 503 NQQTATYYEQDVREKLRALDWAPIVYSTAIAGQSVDKIIVAAEMVDK 549 (693)
Q Consensus 503 ~~~~~~~~~~~i~~~~~~~~~~pii~iSA~~g~gi~~L~~~i~~~~~ 549 (693)
. .+ .+.+.+. ...+++++||++|.|+++|++.+.+...
T Consensus 367 ~---~~----~~~~~~~--~~~~~i~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 367 N---EE----EIKNKLG--TDRHMVKISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp C---HH----HHHHHHT--CSTTEEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred C---HH----HHHHHHC--CCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8---99----9998726--8995899979998799999999999976
No 10
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=1.00 E-value=1 Score=180.43 Aligned_cols=145 Identities=22% Similarity=0.251 Sum_probs=101.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCEE------------------------EEC------CCCCCEEEEEEEEEEECCEEE
Q ss_conf 95999838999734698776269614------------------------652------889720001799999567269
Q 005504 164 PRVAIVGRPNVGKSALFNRLVGGNRA------------------------IVV------DEPGVTRDRMYGRSFWGEHEF 213 (693)
Q Consensus 164 ~~I~ivG~~nvGKSsL~n~l~~~~~~------------------------~~~------~~~~~T~~~~~~~~~~~~~~~ 213 (693)
.+|+++|++|+|||||+|+|++.... .+. ...|+|.+.....+...+..+
T Consensus 8 ~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~~ 87 (458)
T 1f60_A 8 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQV 87 (458)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHCCCEEEEEEEEEECCCCEE
T ss_conf 49999918999989999999987489576887776666775177621002231366568865958888899996389469
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCH-----
Q ss_conf 997368864346896024332222212467898424477887201389999999999861829999959999998-----
Q 005504 214 MLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTA----- 288 (693)
Q Consensus 214 ~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~i~~adiil~VvD~~~~~~~----- 288 (693)
.+|||||+..+ ......++..+|++++|+|++++..+
T Consensus 88 ~iiDtPGh~~f--------------------------------------~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~ 129 (458)
T 1f60_A 88 TVIDAPGHRDF--------------------------------------IKNMITGTSQADCAILIIAGGVGEFEAGISK 129 (458)
T ss_dssp EEEECCCCTTH--------------------------------------HHHHHHSSSCCSEEEEEEECSHHHHHHHTCT
T ss_pred EEEECCCCHHH--------------------------------------HHHHHHHHHHCCEEEEEEECCCCCCCCCCCC
T ss_conf 99989981788--------------------------------------8999831300788999996786755544576
Q ss_pred --HHHHHHHHHHHHCCCCC-EEEEECCCCCCC--CHH-H----HHHHH-HHCC-----CCCCCCCCCCCCCHHHHH
Q ss_conf --79999999986038994-999712467863--024-3----48988-8669-----997313356789978899
Q 005504 289 --ADEEIADWLRKNYMDKF-IILAVNKCESPR--KGI-M----QVSEF-WSLG-----FSPLPISAISGTGTGELL 348 (693)
Q Consensus 289 --~d~~~~~~l~~~~~~~p-~iiv~NK~D~~~--~~~-~----~~~~~-~~~g-----~~~v~iSA~~g~gi~~Ll 348 (693)
+..+.+..+.. .+.| +++|+||+|+.. ... . +...+ ...+ .+++++||.+|.|+.++.
T Consensus 130 ~~qt~~~~~~~~~--~~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~ 203 (458)
T 1f60_A 130 DGQTREHALLAFT--LGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEAT 203 (458)
T ss_dssp TSHHHHHHHHHHH--TTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCC
T ss_pred CHHHHHHHHHHHH--CCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCC
T ss_conf 4308999999998--4998599999766666678999999999999999971987557518983354675753444
Done!