Query 005506
Match_columns 693
No_of_seqs 761 out of 3890
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 00:32:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005506.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005506hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1310 WD40 repeat protein [G 100.0 2E-101 5E-106 791.5 34.0 653 1-682 1-680 (758)
2 KOG1334 WD40 repeat protein [G 100.0 1.2E-42 2.6E-47 355.2 16.4 260 12-306 104-363 (559)
3 KOG0271 Notchless-like WD40 re 100.0 3.7E-32 8.1E-37 270.7 22.3 275 25-336 134-466 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 2.1E-31 4.6E-36 268.9 20.2 264 36-335 161-444 (459)
5 KOG0271 Notchless-like WD40 re 100.0 6E-31 1.3E-35 262.1 21.7 262 41-336 106-424 (480)
6 KOG0286 G-protein beta subunit 100.0 4.3E-30 9.3E-35 248.5 25.4 238 40-335 45-329 (343)
7 KOG0263 Transcription initiati 100.0 5.1E-31 1.1E-35 285.1 21.2 213 39-312 440-652 (707)
8 KOG0272 U4/U6 small nuclear ri 100.0 2.9E-31 6.3E-36 267.9 15.0 220 26-307 239-458 (459)
9 KOG0279 G protein beta subunit 100.0 2.7E-27 5.9E-32 228.0 25.0 242 39-340 4-252 (315)
10 KOG0279 G protein beta subunit 100.0 2E-27 4.3E-32 228.9 22.7 214 36-312 49-265 (315)
11 KOG0315 G-protein beta subunit 100.0 1.3E-26 2.8E-31 219.7 24.2 246 27-326 60-305 (311)
12 KOG0291 WD40-repeat-containing 100.0 1.5E-25 3.2E-30 240.4 33.7 252 28-312 330-615 (893)
13 KOG0263 Transcription initiati 100.0 4E-27 8.6E-32 255.1 21.4 239 43-342 371-640 (707)
14 KOG0295 WD40 repeat-containing 100.0 2.6E-27 5.7E-32 235.4 17.7 247 26-334 128-389 (406)
15 KOG0265 U5 snRNP-specific prot 99.9 1.1E-26 2.3E-31 225.9 21.1 265 42-335 39-322 (338)
16 KOG0286 G-protein beta subunit 99.9 1.3E-26 2.9E-31 224.4 21.4 224 25-307 116-343 (343)
17 KOG0284 Polyadenylation factor 99.9 1.2E-27 2.5E-32 240.8 13.5 237 39-336 127-365 (464)
18 KOG0315 G-protein beta subunit 99.9 1.4E-25 3.1E-30 212.7 26.0 255 24-336 16-273 (311)
19 KOG0316 Conserved WD40 repeat- 99.9 5.5E-26 1.2E-30 213.8 22.3 258 43-339 10-288 (307)
20 KOG0266 WD40 repeat-containing 99.9 7.1E-26 1.5E-30 250.7 27.1 244 42-341 195-442 (456)
21 KOG0293 WD40 repeat-containing 99.9 1.2E-25 2.6E-30 226.3 24.8 206 43-310 217-426 (519)
22 KOG0273 Beta-transducin family 99.9 1E-25 2.3E-30 230.5 24.4 247 26-337 255-509 (524)
23 KOG0285 Pleiotropic regulator 99.9 2.2E-26 4.9E-31 227.8 18.3 216 39-316 140-355 (460)
24 KOG0645 WD40 repeat protein [G 99.9 2.4E-25 5.2E-30 213.7 24.8 220 39-310 3-226 (312)
25 PTZ00421 coronin; Provisional 99.9 4E-25 8.6E-30 244.3 29.9 231 45-332 70-314 (493)
26 KOG0319 WD40-repeat-containing 99.9 1.8E-25 3.9E-30 239.7 25.9 371 28-470 346-724 (775)
27 KOG0282 mRNA splicing factor [ 99.9 2.5E-26 5.4E-31 236.0 16.2 255 41-335 205-488 (503)
28 KOG0284 Polyadenylation factor 99.9 1.4E-26 3.1E-31 233.0 13.5 226 50-337 96-322 (464)
29 KOG0281 Beta-TrCP (transducin 99.9 1.9E-26 4E-31 227.3 12.5 218 27-314 216-433 (499)
30 KOG0292 Vesicle coat complex C 99.9 3.2E-25 6.9E-30 240.8 22.5 272 27-334 30-305 (1202)
31 KOG0318 WD40 repeat stress pro 99.9 4.1E-24 8.8E-29 221.4 29.6 287 38-348 178-557 (603)
32 KOG0283 WD40 repeat-containing 99.9 2.3E-25 4.9E-30 243.5 20.1 241 37-311 253-578 (712)
33 KOG0266 WD40 repeat-containing 99.9 1.4E-24 3E-29 240.4 26.2 225 41-322 149-377 (456)
34 KOG0277 Peroxisomal targeting 99.9 1.8E-25 3.9E-30 212.6 15.5 227 25-308 80-308 (311)
35 KOG0285 Pleiotropic regulator 99.9 2.4E-24 5.2E-29 213.5 21.5 253 25-310 170-440 (460)
36 KOG0276 Vesicle coat complex C 99.9 1.9E-24 4E-29 227.5 20.1 249 26-334 33-282 (794)
37 KOG0291 WD40-repeat-containing 99.9 1.3E-23 2.7E-28 225.6 26.0 249 37-345 294-544 (893)
38 PTZ00420 coronin; Provisional 99.9 3.8E-23 8.2E-28 229.7 30.1 251 27-333 53-318 (568)
39 KOG0277 Peroxisomal targeting 99.9 1.7E-24 3.6E-29 206.1 15.8 227 49-332 59-289 (311)
40 KOG0640 mRNA cleavage stimulat 99.9 3.6E-24 7.9E-29 208.6 18.3 219 44-316 106-342 (430)
41 cd00200 WD40 WD40 domain, foun 99.9 4.1E-23 8.9E-28 211.3 27.2 229 43-332 2-230 (289)
42 KOG1446 Histone H3 (Lys4) meth 99.9 1.2E-22 2.5E-27 199.9 27.4 264 38-334 2-288 (311)
43 KOG1407 WD40 repeat protein [F 99.9 1.9E-23 4.1E-28 199.7 20.8 263 44-342 14-293 (313)
44 KOG0282 mRNA splicing factor [ 99.9 4.8E-24 1E-28 219.3 17.8 247 24-307 233-503 (503)
45 KOG0296 Angio-associated migra 99.9 4.3E-23 9.2E-28 205.6 23.6 263 37-336 93-383 (399)
46 KOG0645 WD40 repeat protein [G 99.9 5E-23 1.1E-27 197.9 22.9 229 24-309 79-311 (312)
47 KOG0273 Beta-transducin family 99.9 4E-23 8.7E-28 211.6 23.7 236 50-348 235-479 (524)
48 KOG0276 Vesicle coat complex C 99.9 1.1E-23 2.3E-28 221.8 19.1 237 41-336 4-242 (794)
49 cd00200 WD40 WD40 domain, foun 99.9 4.2E-22 9E-27 203.8 29.0 245 27-334 30-274 (289)
50 KOG0288 WD40 repeat protein Ti 99.9 8.3E-24 1.8E-28 213.5 15.0 254 23-337 192-447 (459)
51 KOG0772 Uncharacterized conser 99.9 2.6E-23 5.7E-28 214.6 18.5 260 40-337 157-425 (641)
52 PLN00181 protein SPA1-RELATED; 99.9 2.7E-22 5.8E-27 238.0 29.8 227 46-332 479-719 (793)
53 KOG0264 Nucleosome remodeling 99.9 5E-23 1.1E-27 210.9 20.0 231 39-310 166-405 (422)
54 KOG0275 Conserved WD40 repeat- 99.9 2.7E-23 5.9E-28 203.2 17.1 241 45-340 258-498 (508)
55 PLN00181 protein SPA1-RELATED; 99.9 5.1E-22 1.1E-26 235.6 30.5 239 26-308 553-792 (793)
56 KOG0278 Serine/threonine kinas 99.9 7.5E-24 1.6E-28 201.0 11.7 236 39-312 48-300 (334)
57 KOG0268 Sof1-like rRNA process 99.9 2.2E-23 4.7E-28 207.3 15.5 237 43-332 59-326 (433)
58 KOG0295 WD40 repeat-containing 99.9 5.9E-23 1.3E-27 204.5 18.5 244 32-335 90-348 (406)
59 KOG0264 Nucleosome remodeling 99.9 1.6E-22 3.4E-27 207.3 20.1 217 48-312 122-350 (422)
60 KOG0647 mRNA export protein (c 99.9 3.7E-22 7.9E-27 194.6 20.9 263 48-335 25-307 (347)
61 KOG0281 Beta-TrCP (transducin 99.9 1.2E-23 2.5E-28 207.7 10.3 215 49-331 196-410 (499)
62 KOG0265 U5 snRNP-specific prot 99.9 5.5E-22 1.2E-26 193.2 20.7 231 42-308 82-337 (338)
63 KOG0310 Conserved WD40 repeat- 99.9 2.7E-22 5.8E-27 206.9 19.0 240 39-338 57-296 (487)
64 KOG0313 Microtubule binding pr 99.9 3.6E-22 7.7E-27 199.9 19.1 203 47-309 190-418 (423)
65 KOG0643 Translation initiation 99.9 1E-21 2.2E-26 188.4 21.1 238 37-310 39-318 (327)
66 KOG0318 WD40 repeat stress pro 99.9 3.3E-21 7.1E-26 200.0 26.4 251 37-315 46-356 (603)
67 KOG1332 Vesicle coat complex C 99.9 8.6E-22 1.9E-26 186.7 18.8 236 26-310 31-287 (299)
68 KOG0305 Anaphase promoting com 99.9 1.3E-21 2.9E-26 209.2 22.7 247 29-338 198-448 (484)
69 KOG0973 Histone transcription 99.9 1.7E-21 3.6E-26 218.3 23.1 235 41-311 60-357 (942)
70 KOG0294 WD40 repeat-containing 99.9 2.5E-21 5.4E-26 189.8 21.2 236 37-311 30-283 (362)
71 KOG0319 WD40-repeat-containing 99.9 3.9E-22 8.4E-27 214.3 16.9 223 28-310 387-620 (775)
72 KOG0293 WD40 repeat-containing 99.9 5.9E-22 1.3E-26 199.8 17.2 238 38-310 257-514 (519)
73 KOG0643 Translation initiation 99.9 4.9E-21 1.1E-25 183.7 22.5 237 45-336 5-246 (327)
74 KOG0289 mRNA splicing factor [ 99.9 2.8E-21 6.1E-26 196.2 21.5 213 38-310 249-463 (506)
75 KOG0292 Vesicle coat complex C 99.9 7.7E-22 1.7E-26 214.7 18.6 242 45-333 4-262 (1202)
76 PTZ00421 coronin; Provisional 99.9 8.6E-21 1.9E-25 209.9 27.3 217 49-316 19-252 (493)
77 PTZ00420 coronin; Provisional 99.9 1.2E-20 2.6E-25 209.8 27.9 200 68-318 50-257 (568)
78 KOG0274 Cdc4 and related F-box 99.9 3.9E-21 8.5E-26 213.0 23.9 227 26-320 226-452 (537)
79 KOG0300 WD40 repeat-containing 99.9 1.5E-21 3.2E-26 190.8 18.0 249 39-338 137-415 (481)
80 KOG0310 Conserved WD40 repeat- 99.9 1.9E-21 4.1E-26 200.7 19.7 224 25-311 87-311 (487)
81 KOG0313 Microtubule binding pr 99.9 3E-21 6.6E-26 193.3 20.4 235 26-312 123-379 (423)
82 KOG0269 WD40 repeat-containing 99.9 3.8E-22 8.3E-27 215.2 14.8 223 52-331 89-319 (839)
83 KOG0302 Ribosome Assembly prot 99.9 2.6E-21 5.6E-26 193.5 18.9 219 41-310 142-379 (440)
84 KOG0275 Conserved WD40 repeat- 99.9 1.2E-21 2.6E-26 191.8 16.1 205 48-310 211-424 (508)
85 KOG0641 WD40 repeat protein [G 99.9 3.4E-20 7.4E-25 173.5 25.0 234 46-332 85-330 (350)
86 KOG0646 WD40 repeat protein [G 99.9 4.8E-21 1E-25 196.6 21.1 248 50-335 81-333 (476)
87 KOG0299 U3 snoRNP-associated p 99.9 4.3E-21 9.4E-26 196.5 20.6 215 47-312 199-413 (479)
88 KOG0316 Conserved WD40 repeat- 99.9 5.2E-21 1.1E-25 180.4 19.2 243 25-307 36-297 (307)
89 KOG0553 TPR repeat-containing 99.9 3.2E-22 6.9E-27 197.6 10.0 122 359-490 77-198 (304)
90 KOG0308 Conserved WD40 repeat- 99.9 1.7E-21 3.7E-26 206.5 15.7 236 42-328 65-304 (735)
91 KOG0300 WD40 repeat-containing 99.9 7E-21 1.5E-25 186.1 18.0 226 24-313 166-432 (481)
92 KOG4234 TPR repeat-containing 99.9 5.6E-22 1.2E-26 183.2 9.8 128 359-491 91-218 (271)
93 KOG0772 Uncharacterized conser 99.9 8.9E-21 1.9E-25 196.1 19.6 245 49-343 213-479 (641)
94 KOG0305 Anaphase promoting com 99.9 8.1E-21 1.8E-25 203.3 19.6 225 24-311 235-463 (484)
95 KOG0296 Angio-associated migra 99.9 3.3E-20 7.1E-25 185.2 21.9 213 40-312 54-266 (399)
96 KOG1036 Mitotic spindle checkp 99.9 3.4E-20 7.4E-25 181.7 21.3 264 50-339 13-292 (323)
97 KOG0289 mRNA splicing factor [ 99.9 4.4E-20 9.6E-25 187.6 21.8 230 51-339 220-450 (506)
98 KOG0306 WD40-repeat-containing 99.9 6.1E-20 1.3E-24 197.4 22.4 237 44-332 367-603 (888)
99 KOG0308 Conserved WD40 repeat- 99.8 1.3E-20 2.7E-25 200.0 16.3 249 48-344 19-278 (735)
100 KOG0288 WD40 repeat protein Ti 99.8 1.2E-20 2.5E-25 190.9 13.6 242 4-306 188-458 (459)
101 KOG2445 Nuclear pore complex c 99.8 6.8E-19 1.5E-23 172.2 25.3 258 47-310 10-319 (361)
102 KOG0301 Phospholipase A2-activ 99.8 4.1E-20 9E-25 197.5 18.2 202 37-310 88-289 (745)
103 KOG4227 WD40 repeat protein [G 99.8 3.4E-20 7.5E-25 185.6 15.8 256 11-318 19-283 (609)
104 KOG4283 Transcription-coupled 99.8 8.8E-20 1.9E-24 177.1 18.0 227 47-318 40-285 (397)
105 KOG0973 Histone transcription 99.8 8.2E-20 1.8E-24 204.9 20.2 239 49-332 12-276 (942)
106 KOG0270 WD40 repeat-containing 99.8 8.5E-20 1.8E-24 186.4 17.5 210 47-311 240-451 (463)
107 KOG0306 WD40-repeat-containing 99.8 1.4E-19 3E-24 194.7 19.6 210 41-310 445-665 (888)
108 KOG0274 Cdc4 and related F-box 99.8 2.5E-19 5.4E-24 198.7 21.8 222 25-316 268-489 (537)
109 KOG1332 Vesicle coat complex C 99.8 1.6E-19 3.4E-24 171.4 17.1 246 46-341 7-276 (299)
110 KOG0268 Sof1-like rRNA process 99.8 6.3E-20 1.4E-24 182.8 14.9 225 24-311 85-347 (433)
111 KOG0269 WD40 repeat-containing 99.8 2E-19 4.3E-24 194.4 18.3 231 50-334 39-276 (839)
112 KOG0302 Ribosome Assembly prot 99.8 1.7E-19 3.7E-24 180.6 16.3 228 38-302 199-432 (440)
113 KOG0267 Microtubule severing p 99.8 1.3E-20 2.9E-25 201.8 8.5 204 37-301 57-260 (825)
114 KOG0299 U3 snoRNP-associated p 99.8 6.1E-19 1.3E-23 180.9 18.8 225 25-299 221-445 (479)
115 KOG4328 WD40 protein [Function 99.8 1.5E-18 3.3E-23 177.8 21.1 260 38-337 174-480 (498)
116 KOG0267 Microtubule severing p 99.8 2.6E-20 5.7E-25 199.6 8.6 231 43-334 21-251 (825)
117 KOG1408 WD40 repeat protein [F 99.8 5.2E-19 1.1E-23 188.7 17.8 259 48-355 457-717 (1080)
118 KOG0301 Phospholipase A2-activ 99.8 1.3E-18 2.9E-23 186.1 20.8 222 27-319 34-257 (745)
119 KOG1273 WD40 repeat protein [G 99.8 1.7E-18 3.8E-23 169.7 19.8 260 53-337 26-309 (405)
120 KOG0641 WD40 repeat protein [G 99.8 2.5E-17 5.5E-22 154.4 26.4 246 38-333 21-285 (350)
121 KOG0278 Serine/threonine kinas 99.8 2.9E-19 6.4E-24 169.9 13.0 254 44-338 8-284 (334)
122 KOG0321 WD40 repeat-containing 99.8 3E-18 6.4E-23 181.8 20.7 256 44-335 94-374 (720)
123 KOG1407 WD40 repeat protein [F 99.8 3.4E-18 7.3E-23 163.9 19.2 224 24-300 38-293 (313)
124 KOG0647 mRNA export protein (c 99.8 5.8E-18 1.3E-22 165.4 21.0 218 44-299 66-313 (347)
125 KOG4283 Transcription-coupled 99.8 1.4E-17 3E-22 162.0 23.0 179 47-249 98-279 (397)
126 KOG0640 mRNA cleavage stimulat 99.8 1E-18 2.2E-23 170.8 15.1 243 41-335 163-410 (430)
127 KOG0283 WD40 repeat-containing 99.8 1.3E-18 2.8E-23 190.9 17.6 176 85-312 259-484 (712)
128 KOG2096 WD40 repeat protein [G 99.8 1.9E-17 4.1E-22 162.6 22.5 223 43-310 79-309 (420)
129 KOG1274 WD40 repeat protein [G 99.8 1.9E-17 4.1E-22 182.4 24.4 243 47-343 10-292 (933)
130 KOG0642 Cell-cycle nuclear pro 99.8 5.2E-18 1.1E-22 178.2 18.2 250 34-311 278-563 (577)
131 KOG0270 WD40 repeat-containing 99.8 4.2E-18 9.2E-23 174.1 17.1 203 53-311 176-406 (463)
132 KOG4378 Nuclear protein COP1 [ 99.8 3.9E-18 8.4E-23 175.8 16.9 246 25-332 54-304 (673)
133 KOG0543 FKBP-type peptidyl-pro 99.8 1.5E-18 3.3E-23 178.5 11.8 132 358-493 203-343 (397)
134 KOG0321 WD40 repeat-containing 99.8 1.6E-17 3.6E-22 176.2 18.6 251 45-322 42-314 (720)
135 KOG1539 WD repeat protein [Gen 99.8 1.1E-16 2.5E-21 174.5 24.2 289 36-336 230-632 (910)
136 KOG1007 WD repeat protein TSSC 99.7 9.2E-17 2E-21 156.0 19.4 231 37-310 109-362 (370)
137 KOG0307 Vesicle coat complex C 99.7 1E-17 2.2E-22 188.9 14.4 231 50-334 64-309 (1049)
138 KOG0303 Actin-binding protein 99.7 5.1E-17 1.1E-21 163.8 17.8 229 45-332 76-320 (472)
139 KOG1036 Mitotic spindle checkp 99.7 4.6E-16 1E-20 152.9 23.4 211 48-299 52-294 (323)
140 KOG4648 Uncharacterized conser 99.7 2.7E-18 5.9E-23 170.6 8.0 118 359-486 93-210 (536)
141 KOG0548 Molecular co-chaperone 99.7 7.6E-18 1.7E-22 177.5 10.9 120 359-488 354-473 (539)
142 KOG0639 Transducin-like enhanc 99.7 4.3E-17 9.3E-22 168.3 16.1 245 28-308 440-703 (705)
143 KOG0290 Conserved WD40 repeat- 99.7 1.1E-16 2.4E-21 155.6 17.5 233 48-332 94-346 (364)
144 KOG1446 Histone H3 (Lys4) meth 99.7 6.4E-16 1.4E-20 152.6 22.9 214 37-309 87-303 (311)
145 KOG0639 Transducin-like enhanc 99.7 5.9E-17 1.3E-21 167.2 16.3 233 40-334 410-646 (705)
146 KOG0547 Translocase of outer m 99.7 1.7E-17 3.6E-22 172.2 10.7 120 359-488 111-231 (606)
147 KOG0307 Vesicle coat complex C 99.7 1.9E-17 4.1E-22 186.8 11.7 219 38-312 104-330 (1049)
148 KOG0646 WD40 repeat protein [G 99.7 1.6E-16 3.4E-21 163.7 16.2 236 28-309 103-350 (476)
149 KOG4328 WD40 protein [Function 99.7 3.7E-16 7.9E-21 160.5 17.4 196 90-309 183-399 (498)
150 KOG0303 Actin-binding protein 99.7 6.7E-16 1.5E-20 155.8 19.0 180 90-320 78-260 (472)
151 KOG0644 Uncharacterized conser 99.7 6E-17 1.3E-21 176.0 12.0 277 35-351 175-468 (1113)
152 KOG1408 WD40 repeat protein [F 99.7 3.8E-16 8.3E-21 167.1 17.7 230 28-310 481-714 (1080)
153 KOG0294 WD40 repeat-containing 99.7 3E-16 6.5E-21 154.3 15.4 200 8-249 43-284 (362)
154 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 5.8E-15 1.3E-19 154.1 26.3 262 28-331 11-300 (300)
155 KOG1034 Transcriptional repres 99.7 2.5E-16 5.3E-21 155.7 14.1 240 38-310 123-384 (385)
156 KOG2106 Uncharacterized conser 99.7 4.5E-15 9.8E-20 153.9 23.9 234 45-336 240-506 (626)
157 KOG0650 WD40 repeat nucleolar 99.7 2.1E-15 4.5E-20 159.2 20.6 248 42-341 392-670 (733)
158 KOG1063 RNA polymerase II elon 99.7 2E-15 4.3E-20 161.9 20.3 286 25-335 166-632 (764)
159 KOG4378 Nuclear protein COP1 [ 99.7 1.4E-15 3.1E-20 157.0 18.0 207 26-291 99-305 (673)
160 KOG1539 WD repeat protein [Gen 99.7 1.5E-15 3.2E-20 165.9 19.0 199 50-310 448-649 (910)
161 KOG1009 Chromatin assembly com 99.7 1.1E-15 2.3E-20 155.1 15.9 278 7-312 30-375 (434)
162 KOG1273 WD40 repeat protein [G 99.7 1.7E-15 3.6E-20 148.9 15.8 234 26-310 43-323 (405)
163 KOG0550 Molecular chaperone (D 99.7 1.8E-16 3.9E-21 161.8 9.2 129 357-492 243-371 (486)
164 KOG1188 WD40 repeat protein [G 99.7 4.2E-15 9E-20 147.9 18.6 199 63-312 41-245 (376)
165 KOG2055 WD40 repeat protein [G 99.7 2.5E-15 5.4E-20 154.5 17.0 225 31-309 283-512 (514)
166 KOG1538 Uncharacterized conser 99.7 1.8E-15 3.9E-20 160.8 16.3 231 37-310 40-294 (1081)
167 KOG0551 Hsp90 co-chaperone CNS 99.7 4.3E-16 9.4E-21 155.1 10.8 108 360-473 78-185 (390)
168 KOG1063 RNA polymerase II elon 99.6 5E-15 1.1E-19 158.9 18.4 225 43-309 518-763 (764)
169 KOG2048 WD40 repeat protein [G 99.6 3.6E-14 7.8E-19 152.3 24.9 234 48-334 23-258 (691)
170 KOG0290 Conserved WD40 repeat- 99.6 7.4E-15 1.6E-19 143.0 17.7 203 48-300 148-357 (364)
171 KOG2055 WD40 repeat protein [G 99.6 8.4E-15 1.8E-19 150.6 18.8 231 50-339 213-453 (514)
172 KOG1188 WD40 repeat protein [G 99.6 5.5E-15 1.2E-19 147.0 15.9 249 28-310 50-347 (376)
173 KOG1007 WD repeat protein TSSC 99.6 6.4E-15 1.4E-19 143.3 15.7 216 43-310 56-290 (370)
174 KOG2048 WD40 repeat protein [G 99.6 7.1E-14 1.5E-18 150.0 24.2 250 28-332 47-302 (691)
175 KOG1034 Transcriptional repres 99.6 3.5E-15 7.6E-20 147.6 12.6 257 48-333 87-365 (385)
176 KOG0376 Serine-threonine phosp 99.6 8.2E-16 1.8E-20 161.2 8.6 128 362-499 3-130 (476)
177 KOG1274 WD40 repeat protein [G 99.6 4.3E-14 9.3E-19 156.3 21.8 207 42-304 88-295 (933)
178 TIGR03866 PQQ_ABC_repeats PQQ- 99.6 2E-13 4.3E-18 142.5 26.2 242 62-337 1-264 (300)
179 KOG1587 Cytoplasmic dynein int 99.6 6.7E-14 1.5E-18 154.5 23.1 226 40-310 233-517 (555)
180 KOG2919 Guanine nucleotide-bin 99.6 4.3E-14 9.2E-19 139.6 19.0 239 50-337 104-356 (406)
181 KOG1524 WD40 repeat-containing 99.6 5.7E-15 1.2E-19 153.9 13.0 194 38-308 92-285 (737)
182 KOG0548 Molecular co-chaperone 99.6 3.4E-15 7.3E-20 157.7 10.7 113 363-485 2-114 (539)
183 KOG0322 G-protein beta subunit 99.6 2.2E-14 4.9E-19 138.0 15.0 243 41-309 5-323 (323)
184 KOG1523 Actin-related protein 99.6 1.4E-13 3E-18 136.0 20.6 227 49-312 9-239 (361)
185 KOG1310 WD40 repeat protein [G 99.6 1.6E-13 3.4E-18 143.6 22.1 182 87-308 45-230 (758)
186 KOG2096 WD40 repeat protein [G 99.6 8.7E-14 1.9E-18 137.1 18.7 215 48-307 185-400 (420)
187 KOG0771 Prolactin regulatory e 99.6 2.9E-14 6.3E-19 145.9 15.5 202 54-310 148-355 (398)
188 KOG2919 Guanine nucleotide-bin 99.6 2.2E-13 4.7E-18 134.7 19.7 214 52-316 51-288 (406)
189 KOG1517 Guanine nucleotide bin 99.6 1.4E-13 3E-18 153.6 20.5 265 2-311 1103-1383(1387)
190 KOG2445 Nuclear pore complex c 99.6 2.7E-13 6E-18 133.2 20.2 219 85-335 5-237 (361)
191 KOG1009 Chromatin assembly com 99.6 6E-14 1.3E-18 142.5 15.5 214 50-299 13-250 (434)
192 KOG1445 Tumor-specific antigen 99.6 4.7E-14 1E-18 149.4 14.5 204 50-310 627-845 (1012)
193 KOG0649 WD40 repeat protein [G 99.5 9.4E-13 2E-17 125.5 19.5 220 51-316 11-242 (325)
194 KOG2106 Uncharacterized conser 99.5 3.6E-12 7.8E-17 132.6 24.6 257 47-346 197-472 (626)
195 KOG1240 Protein kinase contain 99.5 2E-12 4.3E-17 146.8 22.5 233 38-320 1036-1284(1431)
196 KOG1445 Tumor-specific antigen 99.5 2.4E-13 5.3E-18 144.1 13.9 202 60-312 589-801 (1012)
197 KOG2110 Uncharacterized conser 99.5 1.2E-11 2.7E-16 124.7 24.8 217 51-310 88-331 (391)
198 COG2319 FOG: WD40 repeat [Gene 99.5 2.3E-11 4.9E-16 130.9 29.1 229 27-315 86-320 (466)
199 KOG1517 Guanine nucleotide bin 99.5 2.6E-12 5.6E-17 143.7 20.9 217 47-311 1061-1289(1387)
200 KOG4227 WD40 repeat protein [G 99.5 4.9E-12 1.1E-16 127.6 20.7 256 41-310 95-388 (609)
201 PRK01742 tolB translocation pr 99.5 4.8E-12 1E-16 139.8 22.4 226 43-333 196-427 (429)
202 COG2319 FOG: WD40 repeat [Gene 99.5 3.5E-11 7.6E-16 129.4 27.9 229 45-331 60-294 (466)
203 KOG0642 Cell-cycle nuclear pro 99.5 1E-12 2.2E-17 138.7 15.0 193 26-247 314-562 (577)
204 KOG4642 Chaperone-dependent E3 99.4 7.3E-14 1.6E-18 133.4 5.6 101 360-470 7-107 (284)
205 KOG0545 Aryl-hydrocarbon recep 99.4 2.7E-13 5.9E-18 129.7 9.3 129 359-491 174-315 (329)
206 KOG0649 WD40 repeat protein [G 99.4 1E-11 2.3E-16 118.4 19.7 209 43-310 55-275 (325)
207 KOG1538 Uncharacterized conser 99.4 3.1E-12 6.7E-17 136.5 16.4 212 52-310 14-253 (1081)
208 KOG1587 Cytoplasmic dynein int 99.4 4.4E-11 9.5E-16 132.4 25.5 238 72-338 222-503 (555)
209 PLN03088 SGT1, suppressor of 99.4 1.2E-12 2.5E-17 140.4 12.8 119 363-491 2-120 (356)
210 KOG1523 Actin-related protein 99.4 7.1E-12 1.5E-16 124.1 16.7 204 25-248 29-238 (361)
211 KOG0650 WD40 repeat nucleolar 99.4 4.3E-12 9.4E-17 134.5 15.2 214 45-306 516-732 (733)
212 PRK11028 6-phosphogluconolacto 99.4 1.8E-10 4E-15 122.9 27.9 267 28-338 12-290 (330)
213 KOG0644 Uncharacterized conser 99.4 5.5E-13 1.2E-17 145.6 8.1 247 27-312 211-471 (1113)
214 KOG2321 WD40 repeat protein [G 99.4 2.3E-10 5E-15 121.1 27.1 250 35-336 37-328 (703)
215 KOG2110 Uncharacterized conser 99.4 1.2E-10 2.5E-15 117.7 22.0 195 52-311 48-250 (391)
216 KOG1963 WD40 repeat protein [G 99.3 1.2E-10 2.7E-15 129.1 23.6 237 28-312 37-378 (792)
217 KOG2139 WD40 repeat protein [G 99.3 1.5E-10 3.3E-15 116.4 20.2 203 50-304 98-306 (445)
218 KOG1272 WD40-repeat-containing 99.3 5.8E-12 1.3E-16 130.0 9.3 215 51-331 130-344 (545)
219 KOG0771 Prolactin regulatory e 99.3 4.3E-11 9.3E-16 122.9 15.2 187 97-336 148-339 (398)
220 PRK04922 tolB translocation pr 99.3 5.3E-10 1.1E-14 123.8 23.2 206 41-311 194-413 (433)
221 KOG2394 WD40 protein DMR-N9 [G 99.3 8.1E-11 1.8E-15 123.7 15.3 180 60-288 183-383 (636)
222 KOG2111 Uncharacterized conser 99.3 4.7E-10 1E-14 111.4 19.7 221 52-311 7-258 (346)
223 KOG2139 WD40 repeat protein [G 99.3 7.9E-10 1.7E-14 111.3 21.4 227 47-310 193-432 (445)
224 KOG3881 Uncharacterized conser 99.3 2.1E-10 4.5E-15 116.7 17.4 237 45-334 100-344 (412)
225 PRK02889 tolB translocation pr 99.3 1.1E-09 2.4E-14 120.9 24.9 228 43-332 188-425 (427)
226 PRK05137 tolB translocation pr 99.2 1.3E-09 2.8E-14 120.9 25.1 206 41-312 192-415 (435)
227 KOG1354 Serine/threonine prote 99.2 1.4E-10 3E-15 115.9 15.3 241 50-319 25-311 (433)
228 KOG1963 WD40 repeat protein [G 99.2 8.2E-10 1.8E-14 122.7 22.5 271 24-311 223-540 (792)
229 PRK03629 tolB translocation pr 99.2 1.2E-09 2.5E-14 120.7 24.0 222 44-331 192-427 (429)
230 KOG0322 G-protein beta subunit 99.2 8.9E-11 1.9E-15 113.5 12.6 163 48-245 148-322 (323)
231 KOG4497 Uncharacterized conser 99.2 2.8E-10 6.1E-15 113.1 16.2 268 55-340 13-380 (447)
232 KOG1524 WD40 repeat-containing 99.2 1.9E-10 4.1E-15 120.7 13.7 206 63-346 76-281 (737)
233 KOG1334 WD40 repeat protein [G 99.2 2.3E-10 4.9E-15 119.2 13.9 282 28-339 164-454 (559)
234 KOG2111 Uncharacterized conser 99.2 8.8E-09 1.9E-13 102.5 24.2 186 23-249 69-259 (346)
235 KOG1240 Protein kinase contain 99.2 9.5E-10 2.1E-14 125.5 19.3 215 77-333 1034-1250(1431)
236 KOG1272 WD40-repeat-containing 99.2 3.2E-11 7E-16 124.6 6.7 215 52-333 172-391 (545)
237 PRK11028 6-phosphogluconolacto 99.2 8.3E-09 1.8E-13 110.1 25.1 217 51-310 80-305 (330)
238 KOG0280 Uncharacterized conser 99.1 3.3E-09 7.1E-14 104.4 18.5 209 49-312 68-287 (339)
239 KOG2394 WD40 protein DMR-N9 [G 99.1 1.4E-10 3.1E-15 121.8 9.1 104 41-157 281-384 (636)
240 PF08662 eIF2A: Eukaryotic tra 99.1 2.4E-09 5.3E-14 104.7 17.2 149 54-246 9-179 (194)
241 TIGR00990 3a0801s09 mitochondr 99.1 2E-10 4.4E-15 133.0 11.2 105 361-476 125-229 (615)
242 PRK15359 type III secretion sy 99.1 8.4E-10 1.8E-14 102.6 12.8 103 366-478 27-129 (144)
243 KOG0280 Uncharacterized conser 99.1 2.5E-09 5.4E-14 105.2 14.9 206 53-310 124-334 (339)
244 PRK01742 tolB translocation pr 99.1 3.8E-09 8.1E-14 116.8 18.4 202 71-340 183-390 (429)
245 TIGR02800 propeller_TolB tol-p 99.0 2.5E-08 5.4E-13 110.0 23.3 204 42-310 181-398 (417)
246 KOG3881 Uncharacterized conser 99.0 8.2E-09 1.8E-13 105.2 16.5 165 52-251 150-325 (412)
247 KOG0974 WD-repeat protein WDR6 99.0 1.3E-08 2.9E-13 115.1 19.3 195 57-312 94-291 (967)
248 PF08662 eIF2A: Eukaryotic tra 99.0 8.9E-09 1.9E-13 100.7 15.8 112 49-179 58-180 (194)
249 KOG1064 RAVE (regulator of V-A 99.0 2.1E-09 4.6E-14 126.4 12.1 194 46-311 2204-2400(2439)
250 TIGR02552 LcrH_SycD type III s 99.0 4.2E-09 9.1E-14 96.6 11.9 121 358-488 12-132 (135)
251 KOG2321 WD40 repeat protein [G 99.0 1.2E-08 2.7E-13 108.3 16.6 201 55-310 138-344 (703)
252 KOG1409 Uncharacterized conser 99.0 9.7E-09 2.1E-13 103.0 14.9 244 38-311 12-272 (404)
253 PRK05137 tolB translocation pr 99.0 7.4E-08 1.6E-12 106.8 23.7 203 72-340 182-395 (435)
254 PRK04922 tolB translocation pr 99.0 3.2E-08 7E-13 109.6 20.3 203 72-340 184-397 (433)
255 PRK00178 tolB translocation pr 99.0 9.9E-08 2.1E-12 105.7 24.2 203 43-310 191-407 (430)
256 KOG1308 Hsp70-interacting prot 99.0 3.5E-10 7.6E-15 114.1 3.8 106 358-473 109-214 (377)
257 PRK15363 pathogenicity island 98.9 5E-09 1.1E-13 96.3 10.5 116 347-472 18-134 (157)
258 PRK04792 tolB translocation pr 98.9 1.5E-07 3.2E-12 104.5 23.5 221 45-331 212-446 (448)
259 KOG0974 WD-repeat protein WDR6 98.9 4.2E-09 9E-14 119.1 11.0 137 26-180 153-290 (967)
260 PRK02889 tolB translocation pr 98.9 9.7E-08 2.1E-12 105.5 20.8 205 72-340 176-389 (427)
261 KOG4190 Uncharacterized conser 98.9 7.5E-09 1.6E-13 108.9 9.9 176 44-255 729-915 (1034)
262 PRK03629 tolB translocation pr 98.9 3.7E-07 8.1E-12 100.9 23.9 203 73-341 180-393 (429)
263 KOG4497 Uncharacterized conser 98.9 3.9E-07 8.5E-12 91.1 20.8 260 46-334 87-415 (447)
264 COG5170 CDC55 Serine/threonine 98.8 4.8E-08 1E-12 96.7 14.0 239 49-316 25-316 (460)
265 KOG1354 Serine/threonine prote 98.8 4.9E-08 1.1E-12 98.0 13.8 236 51-315 85-365 (433)
266 PRK01029 tolB translocation pr 98.8 1.1E-06 2.5E-11 96.7 25.5 231 45-332 179-425 (428)
267 KOG0309 Conserved WD40 repeat- 98.8 1.8E-08 3.9E-13 109.6 10.7 241 50-343 24-267 (1081)
268 KOG0624 dsRNA-activated protei 98.8 1.4E-08 3E-13 102.2 9.1 112 357-478 32-143 (504)
269 TIGR02800 propeller_TolB tol-p 98.8 6.5E-07 1.4E-11 98.7 23.4 201 72-338 170-381 (417)
270 PRK10370 formate-dependent nit 98.8 5.1E-08 1.1E-12 95.7 12.8 127 356-494 66-193 (198)
271 KOG4714 Nucleoporin [Nuclear s 98.8 6.4E-08 1.4E-12 93.9 11.6 172 39-247 78-255 (319)
272 KOG1409 Uncharacterized conser 98.8 2.7E-08 5.9E-13 99.9 9.0 93 32-126 179-271 (404)
273 KOG0546 HSP90 co-chaperone CPR 98.8 1.2E-08 2.7E-13 103.7 6.5 132 357-492 216-360 (372)
274 PF13414 TPR_11: TPR repeat; P 98.7 1.5E-08 3.2E-13 81.3 5.1 66 404-472 3-69 (69)
275 KOG4547 WD40 repeat-containing 98.7 5.5E-07 1.2E-11 96.7 18.2 191 60-310 3-221 (541)
276 KOG0624 dsRNA-activated protei 98.7 4E-08 8.6E-13 99.0 8.4 127 360-492 266-392 (504)
277 KOG0550 Molecular chaperone (D 98.7 2.2E-08 4.7E-13 103.4 6.1 97 359-465 45-141 (486)
278 PRK11189 lipoprotein NlpI; Pro 98.7 9E-08 1.9E-12 100.4 10.9 103 363-475 64-166 (296)
279 PF02239 Cytochrom_D1: Cytochr 98.7 1.6E-06 3.5E-11 93.4 20.3 254 37-339 23-286 (369)
280 KOG4532 WD40-like repeat conta 98.7 3.6E-06 7.8E-11 82.2 20.3 211 56-319 73-292 (344)
281 PF02239 Cytochrom_D1: Cytochr 98.7 3.9E-06 8.5E-11 90.4 22.9 200 63-314 6-207 (369)
282 PF10282 Lactonase: Lactonase, 98.6 2.8E-05 6.1E-10 83.5 28.0 230 39-309 75-322 (345)
283 PRK00178 tolB translocation pr 98.6 7.4E-06 1.6E-10 90.8 23.8 203 73-340 180-392 (430)
284 KOG0309 Conserved WD40 repeat- 98.6 1.7E-07 3.7E-12 102.2 10.1 163 52-249 69-235 (1081)
285 PF10282 Lactonase: Lactonase, 98.6 2E-05 4.3E-10 84.6 26.0 260 39-340 26-310 (345)
286 PF00400 WD40: WD domain, G-be 98.6 1.3E-07 2.8E-12 66.4 6.0 38 41-78 2-39 (39)
287 KOG3914 WD repeat protein WDR4 98.6 1.4E-06 3.1E-11 89.6 15.9 166 51-255 63-232 (390)
288 TIGR02795 tol_pal_ybgF tol-pal 98.6 4.4E-07 9.6E-12 80.7 10.8 109 364-479 3-114 (119)
289 PLN02919 haloacid dehalogenase 98.6 2E-05 4.2E-10 95.9 27.4 245 53-312 626-891 (1057)
290 KOG0882 Cyclophilin-related pe 98.5 9.1E-07 2E-11 91.9 13.1 278 24-326 26-321 (558)
291 PF13414 TPR_11: TPR repeat; P 98.5 1.3E-07 2.7E-12 75.8 5.5 68 362-438 2-69 (69)
292 KOG2114 Vacuolar assembly/sort 98.5 5.1E-05 1.1E-09 85.1 27.0 213 52-319 27-252 (933)
293 KOG4626 O-linked N-acetylgluco 98.5 1.9E-07 4.2E-12 100.5 7.7 94 373-476 296-389 (966)
294 KOG1064 RAVE (regulator of V-A 98.5 4.8E-07 1E-11 107.3 10.6 152 51-254 2252-2406(2439)
295 KOG4555 TPR repeat-containing 98.5 7.3E-07 1.6E-11 78.0 9.0 106 359-474 39-148 (175)
296 PRK04792 tolB translocation pr 98.5 1.5E-05 3.3E-10 88.6 22.1 201 73-339 199-410 (448)
297 PRK15331 chaperone protein Sic 98.5 1.4E-06 3.1E-11 80.6 11.2 123 348-481 22-144 (165)
298 KOG4626 O-linked N-acetylgluco 98.4 6E-07 1.3E-11 96.8 9.3 103 365-477 390-492 (966)
299 KOG1275 PAB-dependent poly(A) 98.4 4.3E-06 9.3E-11 93.8 16.1 186 61-307 146-340 (1118)
300 PF15492 Nbas_N: Neuroblastoma 98.4 4.1E-05 8.8E-10 76.2 21.2 196 52-257 45-270 (282)
301 KOG4532 WD40-like repeat conta 98.4 1.6E-05 3.5E-10 77.8 17.7 199 64-310 130-332 (344)
302 TIGR02658 TTQ_MADH_Hv methylam 98.4 0.00017 3.8E-09 76.3 26.1 239 38-317 35-338 (352)
303 cd00189 TPR Tetratricopeptide 98.4 2.2E-06 4.8E-11 71.3 9.8 98 366-473 3-100 (100)
304 KOG4714 Nucleoporin [Nuclear s 98.4 1.4E-06 3E-11 84.8 9.3 167 60-244 142-316 (319)
305 PLN02919 haloacid dehalogenase 98.4 9.5E-05 2.1E-09 90.0 27.3 230 54-312 571-836 (1057)
306 KOG2041 WD40 repeat protein [G 98.4 4.6E-06 9.9E-11 91.0 13.9 245 36-332 57-319 (1189)
307 KOG1832 HIV-1 Vpr-binding prot 98.4 3.6E-07 7.8E-12 101.4 5.6 233 8-311 1058-1293(1516)
308 COG2706 3-carboxymuconate cycl 98.4 0.00047 1E-08 70.8 27.2 252 48-344 37-313 (346)
309 KOG3914 WD repeat protein WDR4 98.4 1.9E-06 4.1E-11 88.8 10.1 102 67-183 127-228 (390)
310 COG4946 Uncharacterized protei 98.4 4.4E-05 9.6E-10 80.1 19.9 119 48-181 357-480 (668)
311 PF12895 Apc3: Anaphase-promot 98.4 6.7E-07 1.5E-11 74.8 5.6 83 376-467 2-84 (84)
312 KOG0547 Translocase of outer m 98.3 3.1E-06 6.7E-11 89.4 11.4 104 363-476 326-429 (606)
313 KOG2315 Predicted translation 98.3 7.2E-05 1.6E-09 80.3 21.8 218 49-335 164-414 (566)
314 TIGR00990 3a0801s09 mitochondr 98.3 2.8E-06 6E-11 98.6 12.4 106 362-477 330-435 (615)
315 KOG2695 WD40 repeat protein [G 98.3 2E-06 4.4E-11 86.7 9.3 165 57-256 218-386 (425)
316 PF15492 Nbas_N: Neuroblastoma 98.3 0.00042 9.1E-09 69.1 25.2 231 56-312 3-262 (282)
317 KOG2695 WD40 repeat protein [G 98.3 1.2E-06 2.7E-11 88.2 7.5 163 99-313 217-380 (425)
318 KOG4190 Uncharacterized conser 98.3 1.6E-06 3.4E-11 91.8 8.5 181 86-312 729-909 (1034)
319 PF13432 TPR_16: Tetratricopep 98.3 1.1E-06 2.3E-11 69.5 5.4 64 409-475 2-65 (65)
320 KOG4547 WD40 repeat-containing 98.3 1.7E-05 3.6E-10 85.6 15.9 126 40-180 90-222 (541)
321 KOG2041 WD40 repeat protein [G 98.3 7.8E-06 1.7E-10 89.2 13.3 238 49-336 13-273 (1189)
322 KOG1912 WD40 repeat protein [G 98.3 4.6E-05 1E-09 84.3 18.5 240 50-333 15-284 (1062)
323 PRK09782 bacteriophage N4 rece 98.3 5.6E-06 1.2E-10 99.3 12.7 107 363-479 609-715 (987)
324 COG5170 CDC55 Serine/threonine 98.3 8.4E-06 1.8E-10 81.1 11.6 226 51-310 86-368 (460)
325 PRK15359 type III secretion sy 98.2 4.3E-06 9.4E-11 77.7 8.7 84 383-478 12-95 (144)
326 PRK02603 photosystem I assembl 98.2 6.1E-06 1.3E-10 79.2 9.9 109 359-474 31-153 (172)
327 PF13512 TPR_18: Tetratricopep 98.2 1.4E-05 3E-10 72.5 11.0 109 363-478 10-136 (142)
328 COG4235 Cytochrome c biogenesi 98.2 1.7E-05 3.6E-10 80.3 12.7 122 356-484 149-270 (287)
329 PF13371 TPR_9: Tetratricopept 98.2 4.3E-06 9.3E-11 67.7 7.0 64 412-478 3-66 (73)
330 TIGR03302 OM_YfiO outer membra 98.2 1.6E-05 3.4E-10 80.3 12.2 116 359-481 29-155 (235)
331 KOG1645 RING-finger-containing 98.2 8.7E-05 1.9E-09 76.7 17.0 87 40-129 183-270 (463)
332 PF00400 WD40: WD domain, G-be 98.2 5.7E-06 1.2E-10 57.9 6.0 38 83-123 2-39 (39)
333 CHL00033 ycf3 photosystem I as 98.2 2.1E-05 4.5E-10 75.2 11.8 109 360-475 32-154 (168)
334 PRK04043 tolB translocation pr 98.1 0.00076 1.6E-08 74.1 25.4 193 52-310 189-401 (419)
335 PRK15179 Vi polysaccharide bio 98.1 1.4E-05 3E-10 92.3 12.1 109 359-477 82-190 (694)
336 PRK10049 pgaA outer membrane p 98.1 2E-05 4.3E-10 93.7 13.8 102 366-477 362-463 (765)
337 KOG1125 TPR repeat-containing 98.1 5.7E-06 1.2E-10 89.4 7.9 96 370-475 437-532 (579)
338 PRK11189 lipoprotein NlpI; Pro 98.1 7.3E-06 1.6E-10 86.0 8.7 93 380-477 42-134 (296)
339 TIGR02658 TTQ_MADH_Hv methylam 98.1 0.0024 5.3E-08 67.7 27.3 234 72-334 27-311 (352)
340 PRK10803 tol-pal system protei 98.1 2.6E-05 5.7E-10 79.7 12.2 113 364-483 143-259 (263)
341 KOG4151 Myosin assembly protei 98.1 6.3E-06 1.4E-10 92.3 8.1 126 359-488 49-174 (748)
342 KOG1912 WD40 repeat protein [G 98.1 0.00013 2.7E-09 80.9 17.6 233 37-310 42-305 (1062)
343 PRK12370 invasion protein regu 98.1 7.3E-06 1.6E-10 93.7 8.8 92 376-477 317-408 (553)
344 KOG2066 Vacuolar assembly/sort 98.1 0.00016 3.6E-09 80.7 18.6 166 45-247 53-234 (846)
345 COG4946 Uncharacterized protei 98.0 0.00086 1.9E-08 70.7 21.3 190 59-313 275-481 (668)
346 PRK01029 tolB translocation pr 98.0 0.0003 6.5E-09 77.7 19.2 165 49-249 229-406 (428)
347 PRK12370 invasion protein regu 98.0 4E-05 8.7E-10 87.6 12.4 108 359-476 334-442 (553)
348 COG2706 3-carboxymuconate cycl 98.0 0.00095 2.1E-08 68.6 20.2 202 71-311 15-223 (346)
349 KOG2314 Translation initiation 98.0 0.00036 7.8E-09 74.8 17.7 74 49-126 249-335 (698)
350 PF14559 TPR_19: Tetratricopep 98.0 8.3E-06 1.8E-10 64.9 4.4 59 420-478 4-62 (68)
351 PF04762 IKI3: IKI3 family; I 98.0 0.0004 8.6E-09 83.2 20.4 218 49-310 208-457 (928)
352 PF13525 YfiO: Outer membrane 98.0 8.5E-05 1.9E-09 73.3 12.4 127 362-495 4-147 (203)
353 PRK10866 outer membrane biogen 98.0 9E-05 2E-09 75.1 12.7 128 362-496 31-182 (243)
354 PLN02789 farnesyltranstransfer 98.0 3.2E-05 7E-10 81.4 9.8 90 380-476 88-177 (320)
355 TIGR02521 type_IV_pilW type IV 97.9 0.00011 2.4E-09 72.7 13.0 104 365-476 101-204 (234)
356 KOG0882 Cyclophilin-related pe 97.9 9E-05 1.9E-09 77.5 12.0 221 49-316 8-238 (558)
357 PF08450 SGL: SMP-30/Gluconola 97.9 0.0034 7.4E-08 63.8 23.8 216 55-329 4-232 (246)
358 PRK09782 bacteriophage N4 rece 97.9 6.3E-05 1.4E-09 90.4 12.3 95 373-478 586-680 (987)
359 KOG4648 Uncharacterized conser 97.9 1.6E-06 3.4E-11 87.6 -1.0 116 364-490 235-350 (536)
360 PRK15174 Vi polysaccharide exp 97.9 5.3E-05 1.1E-09 88.3 11.3 99 370-478 219-321 (656)
361 TIGR02552 LcrH_SycD type III s 97.9 4.6E-05 1E-09 69.6 8.7 85 385-478 4-88 (135)
362 PRK15174 Vi polysaccharide exp 97.9 9.3E-05 2E-09 86.2 13.1 106 360-475 281-386 (656)
363 KOG1008 Uncharacterized conser 97.9 9.7E-06 2.1E-10 87.9 4.3 225 47-310 99-336 (783)
364 COG5354 Uncharacterized protei 97.9 0.0021 4.5E-08 68.6 21.4 242 51-334 72-372 (561)
365 PLN03098 LPA1 LOW PSII ACCUMUL 97.9 3.7E-05 8E-10 82.2 8.5 64 404-470 75-141 (453)
366 KOG2315 Predicted translation 97.9 0.00063 1.4E-08 73.2 17.5 148 55-246 222-390 (566)
367 PF11768 DUF3312: Protein of u 97.9 0.00052 1.1E-08 74.8 16.9 136 29-180 185-331 (545)
368 TIGR02521 type_IV_pilW type IV 97.9 0.00012 2.5E-09 72.6 11.4 101 361-471 29-129 (234)
369 KOG1275 PAB-dependent poly(A) 97.8 0.0002 4.4E-09 80.8 13.7 157 50-246 177-342 (1118)
370 KOG1126 DNA-binding cell divis 97.8 7.7E-05 1.7E-09 82.1 10.2 124 356-489 482-605 (638)
371 COG5354 Uncharacterized protei 97.8 0.00085 1.8E-08 71.5 17.1 228 49-340 31-293 (561)
372 PF04762 IKI3: IKI3 family; I 97.8 0.006 1.3E-07 73.3 26.6 262 28-310 237-520 (928)
373 PRK15179 Vi polysaccharide bio 97.8 0.00021 4.5E-09 82.7 13.6 122 359-490 116-238 (694)
374 KOG2314 Translation initiation 97.8 0.0015 3.3E-08 70.2 18.7 220 53-339 213-463 (698)
375 KOG1008 Uncharacterized conser 97.8 2.2E-05 4.7E-10 85.3 5.0 210 50-310 56-276 (783)
376 PRK10370 formate-dependent nit 97.8 9.8E-05 2.1E-09 72.5 9.3 93 376-478 52-147 (198)
377 PF07433 DUF1513: Protein of u 97.8 0.017 3.6E-07 59.5 25.2 223 54-312 8-250 (305)
378 PF08450 SGL: SMP-30/Gluconola 97.8 0.0067 1.5E-07 61.6 22.6 189 53-298 42-244 (246)
379 PRK04043 tolB translocation pr 97.7 0.0051 1.1E-07 67.7 22.8 201 73-341 170-387 (419)
380 PLN02789 farnesyltranstransfer 97.7 0.00019 4.1E-09 75.6 10.7 93 376-477 50-144 (320)
381 KOG1155 Anaphase-promoting com 97.7 0.00037 8E-09 73.7 12.5 117 363-489 364-480 (559)
382 COG5010 TadD Flp pilus assembl 97.7 0.00039 8.5E-09 68.8 11.9 112 360-481 97-208 (257)
383 PF04841 Vps16_N: Vps16, N-ter 97.7 0.04 8.7E-07 60.5 28.9 48 73-125 62-109 (410)
384 PRK10049 pgaA outer membrane p 97.7 0.00027 5.8E-09 84.1 12.6 106 362-478 48-153 (765)
385 KOG1126 DNA-binding cell divis 97.7 6.8E-05 1.5E-09 82.5 6.9 112 359-480 417-528 (638)
386 COG3063 PilF Tfp pilus assembl 97.7 0.00036 7.7E-09 67.8 10.9 106 361-477 33-138 (250)
387 PRK11447 cellulose synthase su 97.7 0.00024 5.1E-09 88.5 12.4 116 359-478 299-422 (1157)
388 PF06977 SdiA-regulated: SdiA- 97.7 0.0044 9.6E-08 62.6 18.9 231 43-306 14-247 (248)
389 PF06552 TOM20_plant: Plant sp 97.6 0.00015 3.3E-09 67.9 7.7 101 380-486 7-125 (186)
390 KOG4162 Predicted calmodulin-b 97.6 0.00017 3.7E-09 80.5 9.1 103 363-475 684-788 (799)
391 KOG2066 Vacuolar assembly/sort 97.6 0.0023 4.9E-08 71.9 17.4 191 50-309 39-233 (846)
392 KOG1645 RING-finger-containing 97.6 0.0024 5.2E-08 66.3 16.2 97 74-183 175-271 (463)
393 PF04053 Coatomer_WDAD: Coatom 97.6 0.025 5.5E-07 62.3 25.5 147 44-246 26-173 (443)
394 PF13431 TPR_17: Tetratricopep 97.6 3.4E-05 7.3E-10 52.2 1.9 32 430-461 2-33 (34)
395 KOG1155 Anaphase-promoting com 97.6 0.00029 6.2E-09 74.5 9.7 110 369-488 336-445 (559)
396 PRK11788 tetratricopeptide rep 97.6 0.00025 5.5E-09 77.2 9.6 106 364-474 142-247 (389)
397 TIGR02917 PEP_TPR_lipo putativ 97.6 0.00042 9.2E-09 83.4 12.1 107 361-477 123-229 (899)
398 PLN03098 LPA1 LOW PSII ACCUMUL 97.6 0.00045 9.8E-09 74.1 10.7 74 357-437 69-142 (453)
399 KOG3621 WD40 repeat-containing 97.5 0.0047 1E-07 68.5 17.9 123 49-179 32-155 (726)
400 TIGR03302 OM_YfiO outer membra 97.5 0.0013 2.7E-08 66.4 12.8 110 364-477 71-202 (235)
401 PF13371 TPR_9: Tetratricopept 97.5 0.00029 6.2E-09 56.8 6.4 68 371-448 3-70 (73)
402 COG1729 Uncharacterized protei 97.5 0.0011 2.4E-08 66.4 11.6 109 363-478 141-252 (262)
403 smart00320 WD40 WD40 repeats. 97.5 0.00028 6.1E-09 47.4 5.2 38 41-78 3-40 (40)
404 PF00515 TPR_1: Tetratricopept 97.4 8.7E-05 1.9E-09 50.1 2.3 33 442-474 2-34 (34)
405 KOG0553 TPR repeat-containing 97.4 0.00028 6E-09 71.1 6.5 66 408-476 85-150 (304)
406 cd00189 TPR Tetratricopeptide 97.4 0.001 2.3E-08 54.7 9.2 69 406-477 2-70 (100)
407 TIGR03300 assembly_YfgL outer 97.4 0.038 8.2E-07 60.0 23.9 103 61-181 104-211 (377)
408 PF13429 TPR_15: Tetratricopep 97.4 0.00067 1.4E-08 70.5 9.4 113 361-483 144-256 (280)
409 PF11768 DUF3312: Protein of u 97.4 0.00084 1.8E-08 73.3 10.2 75 48-127 257-331 (545)
410 TIGR02917 PEP_TPR_lipo putativ 97.4 0.0012 2.6E-08 79.5 12.9 103 364-477 771-873 (899)
411 KOG1832 HIV-1 Vpr-binding prot 97.4 0.00022 4.8E-09 80.0 5.7 163 84-311 1093-1257(1516)
412 PF13432 TPR_16: Tetratricopep 97.4 0.00029 6.2E-09 55.4 4.8 64 368-441 2-65 (65)
413 PRK11447 cellulose synthase su 97.4 0.00078 1.7E-08 83.9 11.1 102 364-475 604-705 (1157)
414 PF12968 DUF3856: Domain of Un 97.4 0.0014 2.9E-08 56.8 9.0 99 366-468 12-127 (144)
415 PRK11788 tetratricopeptide rep 97.3 0.0013 2.8E-08 71.6 11.3 100 367-476 184-284 (389)
416 PRK11906 transcriptional regul 97.3 0.00052 1.1E-08 73.7 7.7 105 367-477 259-374 (458)
417 KOG1173 Anaphase-promoting com 97.3 0.00099 2.2E-08 72.2 9.7 115 364-482 415-530 (611)
418 PRK10153 DNA-binding transcrip 97.3 0.0014 2.9E-08 73.8 11.1 110 363-476 339-488 (517)
419 PF15015 NYD-SP12_N: Spermatog 97.3 0.0013 2.9E-08 68.7 9.9 106 361-470 174-291 (569)
420 COG3063 PilF Tfp pilus assembl 97.3 0.0025 5.4E-08 62.0 10.9 113 357-477 97-209 (250)
421 PF13360 PQQ_2: PQQ-like domai 97.3 0.011 2.4E-07 59.3 16.4 194 61-312 35-233 (238)
422 PLN03088 SGT1, suppressor of 97.3 0.00087 1.9E-08 72.1 8.6 87 359-455 32-118 (356)
423 PF07719 TPR_2: Tetratricopept 97.2 0.0003 6.5E-09 47.3 3.0 33 442-474 2-34 (34)
424 CHL00033 ycf3 photosystem I as 97.2 0.0016 3.4E-08 62.1 9.1 101 370-478 6-109 (168)
425 COG4783 Putative Zn-dependent 97.2 0.003 6.6E-08 67.7 11.8 96 369-474 346-441 (484)
426 COG2956 Predicted N-acetylgluc 97.2 0.0022 4.7E-08 65.2 10.0 99 372-474 149-247 (389)
427 TIGR02795 tol_pal_ybgF tol-pal 97.2 0.0018 3.8E-08 57.2 8.4 68 406-476 4-74 (119)
428 PF07433 DUF1513: Protein of u 97.2 0.081 1.8E-06 54.6 21.3 173 56-251 56-252 (305)
429 KOG1920 IkappaB kinase complex 97.2 0.073 1.6E-06 62.9 23.0 211 51-311 69-324 (1265)
430 PF14853 Fis1_TPR_C: Fis1 C-te 97.2 0.0011 2.3E-08 49.7 5.5 45 443-491 3-47 (53)
431 KOG2076 RNA polymerase III tra 97.1 0.0059 1.3E-07 69.8 13.6 113 359-472 135-272 (895)
432 KOG2114 Vacuolar assembly/sort 97.1 0.018 4E-07 65.3 17.1 166 100-311 30-203 (933)
433 TIGR03300 assembly_YfgL outer 97.1 0.049 1.1E-06 59.1 20.5 197 61-312 64-262 (377)
434 KOG3617 WD40 and TPR repeat-co 97.1 0.0021 4.4E-08 72.2 9.3 111 53-179 18-132 (1416)
435 COG4785 NlpI Lipoprotein NlpI, 97.1 0.0014 3.1E-08 62.8 7.1 99 369-476 64-168 (297)
436 PF14559 TPR_19: Tetratricopep 97.1 0.00084 1.8E-08 53.2 4.9 65 374-448 2-66 (68)
437 PF09976 TPR_21: Tetratricopep 97.1 0.0028 6.1E-08 58.8 9.0 94 366-467 51-144 (145)
438 PF13424 TPR_12: Tetratricopep 97.0 0.00056 1.2E-08 55.9 3.5 64 404-470 5-75 (78)
439 PRK14574 hmsH outer membrane p 97.0 0.0045 9.7E-08 73.2 12.2 115 359-477 30-172 (822)
440 PF09295 ChAPs: ChAPs (Chs5p-A 97.0 0.0026 5.6E-08 68.6 9.1 90 371-470 208-297 (395)
441 COG4783 Putative Zn-dependent 97.0 0.0071 1.5E-07 64.9 11.9 111 366-486 309-419 (484)
442 PF03704 BTAD: Bacterial trans 96.9 0.009 2E-07 55.3 11.3 101 364-468 7-123 (146)
443 PF14783 BBS2_Mid: Ciliary BBS 96.9 0.038 8.3E-07 47.9 13.9 104 95-241 1-109 (111)
444 PRK02603 photosystem I assembl 96.9 0.0031 6.8E-08 60.3 8.2 72 403-477 34-108 (172)
445 COG3204 Uncharacterized protei 96.9 0.15 3.3E-06 51.6 19.8 184 46-247 81-264 (316)
446 KOG3617 WD40 and TPR repeat-co 96.9 0.01 2.2E-07 66.9 12.6 71 53-126 62-132 (1416)
447 PF08553 VID27: VID27 cytoplas 96.9 0.06 1.3E-06 62.7 19.2 207 68-310 500-725 (794)
448 KOG2076 RNA polymerase III tra 96.9 0.0046 1E-07 70.6 9.8 102 361-471 412-513 (895)
449 PF00515 TPR_1: Tetratricopept 96.8 0.00098 2.1E-08 44.9 2.8 33 405-440 2-34 (34)
450 PF13360 PQQ_2: PQQ-like domai 96.8 0.096 2.1E-06 52.5 18.7 192 70-312 1-194 (238)
451 cd05804 StaR_like StaR_like; a 96.8 0.0076 1.6E-07 64.7 11.1 109 362-474 42-181 (355)
452 KOG2003 TPR repeat-containing 96.8 0.002 4.3E-08 67.7 6.1 109 363-481 490-598 (840)
453 PF14783 BBS2_Mid: Ciliary BBS 96.8 0.066 1.4E-06 46.5 14.3 101 53-173 2-109 (111)
454 PF13429 TPR_15: Tetratricopep 96.8 0.0037 8E-08 64.9 7.9 106 371-484 118-223 (280)
455 KOG3060 Uncharacterized conser 96.7 0.013 2.8E-07 57.9 10.4 106 365-481 88-194 (289)
456 PF13428 TPR_14: Tetratricopep 96.7 0.0023 4.9E-08 46.1 3.8 37 442-478 2-38 (44)
457 PRK14574 hmsH outer membrane p 96.7 0.017 3.6E-07 68.5 13.0 107 362-478 415-521 (822)
458 KOG4640 Anaphase-promoting com 96.6 0.0082 1.8E-07 65.9 9.4 73 51-127 21-94 (665)
459 KOG2002 TPR-containing nuclear 96.6 0.012 2.7E-07 67.7 11.2 122 360-488 267-389 (1018)
460 PF12688 TPR_5: Tetratrico pep 96.6 0.017 3.7E-07 51.5 9.9 95 367-468 5-102 (120)
461 PF08596 Lgl_C: Lethal giant l 96.6 0.081 1.8E-06 57.5 16.8 220 34-300 70-327 (395)
462 cd05804 StaR_like StaR_like; a 96.5 0.017 3.7E-07 62.0 11.3 99 365-473 116-218 (355)
463 smart00320 WD40 WD40 repeats. 96.5 0.0061 1.3E-07 40.5 4.9 38 83-123 3-40 (40)
464 PRK15363 pathogenicity island 96.5 0.006 1.3E-07 56.5 6.2 58 420-477 48-105 (157)
465 PF14938 SNAP: Soluble NSF att 96.5 0.022 4.7E-07 59.3 11.2 123 363-490 114-244 (282)
466 KOG0543 FKBP-type peptidyl-pro 96.5 0.013 2.9E-07 61.7 9.3 88 372-469 266-354 (397)
467 KOG1174 Anaphase-promoting com 96.5 0.031 6.7E-07 58.8 11.7 110 359-475 330-472 (564)
468 PRK14720 transcript cleavage f 96.4 0.023 4.9E-07 67.0 12.0 108 360-479 28-154 (906)
469 COG5010 TadD Flp pilus assembl 96.4 0.019 4.1E-07 57.1 9.6 59 420-478 113-171 (257)
470 KOG1920 IkappaB kinase complex 96.3 0.7 1.5E-05 55.1 22.9 211 93-340 68-308 (1265)
471 COG4105 ComL DNA uptake lipopr 96.3 0.077 1.7E-06 53.0 13.0 126 361-493 32-171 (254)
472 PF13181 TPR_8: Tetratricopept 96.2 0.0037 8E-08 41.9 2.6 32 442-473 2-33 (34)
473 PF03178 CPSF_A: CPSF A subuni 96.2 0.37 8.1E-06 51.0 19.2 157 52-247 28-203 (321)
474 PRK10803 tol-pal system protei 96.2 0.013 2.9E-07 59.9 7.6 77 405-484 143-223 (263)
475 PRK02888 nitrous-oxide reducta 96.2 0.14 3E-06 57.7 16.1 87 146-247 319-405 (635)
476 KOG4649 PQQ (pyrrolo-quinoline 96.2 1.3 2.9E-05 44.1 20.4 225 62-312 63-354 (354)
477 KOG1128 Uncharacterized conser 96.1 0.015 3.2E-07 65.2 7.9 90 374-473 496-585 (777)
478 PF09976 TPR_21: Tetratricopep 96.1 0.1 2.3E-06 48.2 12.4 98 362-466 10-110 (145)
479 PF08553 VID27: VID27 cytoplas 96.1 0.3 6.4E-06 57.1 18.3 133 31-178 505-647 (794)
480 PRK11138 outer membrane biogen 96.1 0.56 1.2E-05 51.2 20.1 201 61-312 68-277 (394)
481 PRK11138 outer membrane biogen 96.0 0.29 6.4E-06 53.5 17.7 181 64-308 207-393 (394)
482 KOG1128 Uncharacterized conser 96.0 0.02 4.4E-07 64.2 8.2 58 420-477 498-555 (777)
483 KOG1174 Anaphase-promoting com 96.0 0.026 5.6E-07 59.3 8.2 117 357-476 226-369 (564)
484 KOG1840 Kinesin light chain [C 95.9 0.021 4.6E-07 63.4 8.2 107 360-470 238-354 (508)
485 PRK02888 nitrous-oxide reducta 95.9 0.43 9.3E-06 54.0 18.0 224 61-310 140-405 (635)
486 PF03178 CPSF_A: CPSF A subuni 95.9 0.4 8.7E-06 50.8 17.5 186 73-310 3-203 (321)
487 KOG2002 TPR-containing nuclear 95.8 0.043 9.2E-07 63.5 9.9 99 376-478 625-753 (1018)
488 PF13174 TPR_6: Tetratricopept 95.8 0.0095 2E-07 39.4 3.0 31 443-473 2-32 (33)
489 PRK10747 putative protoheme IX 95.8 0.11 2.4E-06 57.0 12.9 109 363-481 84-193 (398)
490 KOG4234 TPR repeat-containing 95.8 0.021 4.5E-07 54.4 6.0 66 365-440 136-201 (271)
491 PRK11906 transcriptional regul 95.8 0.035 7.7E-07 60.0 8.6 88 380-476 320-407 (458)
492 PF13424 TPR_12: Tetratricopep 95.8 0.015 3.3E-07 47.3 4.7 71 362-436 4-75 (78)
493 KOG4640 Anaphase-promoting com 95.7 0.044 9.5E-07 60.5 9.2 77 93-183 20-97 (665)
494 COG0823 TolB Periplasmic compo 95.7 0.55 1.2E-05 51.6 17.9 123 43-177 185-311 (425)
495 PF12895 Apc3: Anaphase-promot 95.7 0.0053 1.1E-07 51.0 1.7 55 421-476 3-59 (84)
496 KOG3621 WD40 repeat-containing 95.7 0.074 1.6E-06 59.4 10.9 124 146-310 32-155 (726)
497 KOG2003 TPR repeat-containing 95.6 0.017 3.6E-07 61.1 5.3 68 420-487 503-570 (840)
498 COG3391 Uncharacterized conser 95.6 2.5 5.4E-05 46.0 22.5 204 53-312 76-286 (381)
499 PRK10941 hypothetical protein; 95.6 0.044 9.4E-07 56.1 8.2 82 402-490 179-260 (269)
500 TIGR00540 hemY_coli hemY prote 95.6 0.15 3.2E-06 56.1 13.1 50 421-470 167-216 (409)
No 1
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.3e-101 Score=791.54 Aligned_cols=653 Identities=37% Similarity=0.510 Sum_probs=551.2
Q ss_pred CCCCCCcCcchhhhhcccccCCCCCcCcccccchhhhcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECC
Q 005506 1 MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS 80 (693)
Q Consensus 1 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~ 80 (693)
|++..|.+++|.+.|..|...+.....+...+.+.+++++.++++|+||+|||+||+|+.+|.+|+|||+|..+.|||+.
T Consensus 1 M~~vs~s~~~i~rql~~r~~~~~h~~rq~y~~~s~~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~ 80 (758)
T KOG1310|consen 1 MSGVSLSDGNILRQLDYRDAFQLHISRQIYMGNSTWLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPF 80 (758)
T ss_pred CCceeccchhHhhhccccccchhhhHHHHhccccHHHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecch
Confidence 78899999999999999887766555554558899999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCC
Q 005506 81 SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP 160 (693)
Q Consensus 81 ~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~ 160 (693)
..++++.+.++|.++|+|++|.|.+++.+++||+.|..|++||+...++...+.+...+...+.+|..+|+.|+..|.+|
T Consensus 81 ~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P 160 (758)
T KOG1310|consen 81 EYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP 160 (758)
T ss_pred hcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCC
Confidence 99999999999999999999999998899999999999999999988888888888889999999999999999999999
Q ss_pred cEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcE
Q 005506 161 HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA 240 (693)
Q Consensus 161 ~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I 240 (693)
+.||++++||+|+++|+|.++.|++....+..+.+...+ ....+|++++|.++.+|++|+.|..+
T Consensus 161 htfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~---------------lielk~ltisp~rp~~laVGgsdpfa 225 (758)
T KOG1310|consen 161 HTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ---------------LIELKCLTISPSRPYYLAVGGSDPFA 225 (758)
T ss_pred ceEEEecCCcceeeecccCCccCCccccccHHHHHhchh---------------hheeeeeeecCCCCceEEecCCCchh
Confidence 999999999999999999999887666555555444322 35789999999999999999999999
Q ss_pred EEEec-CCCCCCcccccCCCCC----CcccccccCccc-cCCC-Cc--cceEEEEEcCCCCEEEEEecCCcEEEEECCCC
Q 005506 241 RLYDR-RMLPPLTSCQKRMSPP----PCVNYFCPMHLS-EHGR-SS--LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (693)
Q Consensus 241 riwD~-r~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~-~~--~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~ 311 (693)
++||+ ++.++...-...+.++ .|+++|+|+|+. ..+. .. .-++.++|+|+|..|+++.+..+||+||++.+
T Consensus 226 rLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~ 305 (758)
T KOG1310|consen 226 RLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNED 305 (758)
T ss_pred hhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCC
Confidence 99994 4555555444433333 499999999993 3331 11 12688999999999999999999999999996
Q ss_pred CcceEEeecC-----CCce-eEEec-c--CCCcccccCC--cccccccccccccc------cccCcchhhhHHHHHHhhh
Q 005506 312 GGRAMRYTVG-----DASK-IMSFT-P--TLNGLELQPP--IHDFLQTNIRVRGE------VATGLGKCRMLVEIARNSL 374 (693)
Q Consensus 312 ~~~~~~~~~~-----~~~~-~~~~~-p--~~~g~~~~~~--~~~~~~~~~~~~~~------~~~~~~~a~~lk~~gn~~~ 374 (693)
+.+...+.+- .+.. ...|. | ..+.+....+ ......++.++.++ ....++.++..+++||..|
T Consensus 306 ~~~~~y~~~~~~~~~~~~~~~~lfT~~~~~sN~lh~~en~~~~~tP~sr~hrsp~~a~~~~~~eL~e~ie~~~~egnd~l 385 (758)
T KOG1310|consen 306 KSPTPYFLPIEDSNKKPSKPSLLFTQPLKRSNYLHWYENNFGASTPASRVHRSPYTAAQPRFYELPENIEKFKTEGNDGL 385 (758)
T ss_pred CCceeecCcccccccCCCCcchhhccccccccccccccCCccccCCccccccCcccccccchhhchHHHHHHHhhccchh
Confidence 6444333320 0100 00111 0 0111111111 01111222222211 3457788899999999999
Q ss_pred hcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHh
Q 005506 375 EEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQL 454 (693)
Q Consensus 375 ~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~KA~~r~a~al~~l 454 (693)
..+. +..||..|+++|++.|.. +.||.|||+++|||+|.||.++|++||..||++||.+.|||||+++||.+|
T Consensus 386 y~~~-~~~~i~~~s~a~q~~~~~------~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el 458 (758)
T KOG1310|consen 386 YESI-VSGAISHYSRAIQYVPDA------IYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNEL 458 (758)
T ss_pred hhHH-HHHHHHHHHHHhhhccch------hHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHH
Confidence 9999 999999999999998776 789999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHcccCCCCchhHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCcccccchhhhccccCCCCCCCCC
Q 005506 455 CKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGP 534 (693)
Q Consensus 455 ~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 534 (693)
+++.||+++..+++..+|.+.+.+..+..+.++|++|.+++.+..-.+.+ ||.+.++++.|.+...+.+.+-.
T Consensus 459 ~r~~eal~~~~alq~~~Ptd~a~~~~v~~l~rDi~aa~~~~~~e~~~~~~-------ri~t~~~~~~r~~~~~~~~~~~~ 531 (758)
T KOG1310|consen 459 TRYLEALSCHWALQMSFPTDVARQNFVLCLPRDISAALFSNPSEMIRAFA-------RIDTDLSSVRRFFWIHKVLRGCL 531 (758)
T ss_pred hhHHHhhhhHHHHhhcCchhhhhhhhhhccccchHHHhccCchhhhhhhh-------eeccchhhhhhhhhhhhhhhhhh
Confidence 99999999999999999998888889999999999999887765543333 99999999999999999888888
Q ss_pred CCCCCCCCchhhhhhcccCCCCCCCCCccccccccCCcceeecccCCCcccccccCCCCCCCCCCCCCCCCCCCCccccc
Q 005506 535 RSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVID 614 (693)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (693)
+.+++|+++|+|.++|.+++..+++.|+.|+|-+.++|++++++-++..+-..+...+.....|+..+|+..|+++.+.|
T Consensus 532 ~l~s~d~~~e~e~p~d~qts~vds~~R~dd~n~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~ssl~nDe~dyq~E~syd 611 (758)
T KOG1310|consen 532 LLISSDIYWEQEQPWDSQTSDVDSSQRLDDENGFLTLLEPPVNYENEVESSSGENIVSMYTGHSSLNNDEDDYQDEESYD 611 (758)
T ss_pred hhhcccccccccCCCCCCceeccccccccccccccccccCccccccccccccccccccccccccccccchhhcccchhhh
Confidence 89999999999999999999999999999999999999999999999865555555554444555589999999999999
Q ss_pred cccccccccccccCceeeeeecCCCCEEEeccCCCcEEEEecCccceeeeeecCCee-eeeecccccch
Q 005506 615 MKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAG-NVISSMEECGL 682 (693)
Q Consensus 615 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 682 (693)
|.+||+||||++||||||||||.+||||+||||||++|||++.||+|+.++.||+++ ||||---.|-.
T Consensus 612 y~~rYvGHCNv~TDIKeanFlGqrgeyiasgSddgr~fiwek~tg~i~av~~gdssivnciqghP~~~~ 680 (758)
T KOG1310|consen 612 YASRYVGHCNVTTDIKEANFLGQRGEYIASGSDDGRFFIWEKLTGSILAVIHGDSSIVNCIQGHPRCPT 680 (758)
T ss_pred HHhhhccccccccccccccccccCCCeeeEecCCCceEEeecCCcceEEEeeCchhheeeccCCCCCce
Confidence 999999999999999999999999999999999999999999999999999999965 99997766643
No 2
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.2e-42 Score=355.20 Aligned_cols=260 Identities=31% Similarity=0.510 Sum_probs=218.8
Q ss_pred hhhhcccccCCCCCcCcccccchhhhcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccC
Q 005506 12 YDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG 91 (693)
Q Consensus 12 ~~~~~~r~~~~~~~~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~ 91 (693)
..-+++|+++++..|.+.+.....+++++.+.+.|.+|.|||+.+.|+..|..|+|||+|.+|.+||+.+++....+..+
T Consensus 104 ~~~l~~Re~gss~~f~~~~~~s~~~vqr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SG 183 (559)
T KOG1334|consen 104 GTALHQRELGSSSRFVYEACGSRLFVQRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESG 183 (559)
T ss_pred hhHHHhhhcCchhHHHHHhhhhHHHHHHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccc
Confidence 45577888898889999999999999999999999999999999999999999999999999999999999999999899
Q ss_pred CCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCc
Q 005506 92 HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT 171 (693)
Q Consensus 92 h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~ 171 (693)
|..+|+..+|.|.+++..+++++.||.|++=.+.... .+ +....+..|.++|..++..|..++.|.|+++|+.
T Consensus 184 H~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~-~~------e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~ 256 (559)
T KOG1334|consen 184 HCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETG-YV------ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAV 256 (559)
T ss_pred cccchhhhhccCCCCCcCceeccccCceeeeeecccc-ce------ecceecccccCccceeeecCCCCCcccccccccc
Confidence 9999999999999988999999999999998876532 22 3345566799999999999999999999999999
Q ss_pred EEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCC
Q 005506 172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL 251 (693)
Q Consensus 172 V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~ 251 (693)
|.-+|+++..+.. .+. -+. ...........++.+|.+.+++++|+.|.++|+||.|.....
T Consensus 257 v~~~Dlr~~~pa~-----------~~~-cr~-------~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e 317 (559)
T KOG1334|consen 257 VFHIDLRQDVPAE-----------KFV-CRE-------ADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKE 317 (559)
T ss_pred eeeeeeccCCccc-----------eee-eec-------cCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhc
Confidence 9999999875321 111 000 001113467899999998999999999999999999976432
Q ss_pred cccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEE
Q 005506 252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLM 306 (693)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lw 306 (693)
.. -..+..|+|.|+....+. .|++++|+.++..|+++..|..||||
T Consensus 318 ~~-------n~~~~~f~p~hl~~d~~v--~ITgl~Ysh~~sElLaSYnDe~IYLF 363 (559)
T KOG1334|consen 318 EN-------NGVLDKFCPHHLVEDDPV--NITGLVYSHDGSELLASYNDEDIYLF 363 (559)
T ss_pred cc-------cchhhhcCCccccccCcc--cceeEEecCCccceeeeecccceEEe
Confidence 21 135788999998873333 59999999999999999999999999
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.7e-32 Score=270.71 Aligned_cols=275 Identities=16% Similarity=0.218 Sum_probs=219.0
Q ss_pred CcCcccccchhhhcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeC
Q 005506 25 DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 104 (693)
Q Consensus 25 ~~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~ 104 (693)
..+.++++|+...+ .+.++.+||..-|.|++|+|||+.||||+.||.|++||+.+++++..-..+|...|++++|.|-
T Consensus 134 sGD~TvR~WD~~Te--Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~ 211 (480)
T KOG0271|consen 134 SGDTTVRLWDLDTE--TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPL 211 (480)
T ss_pred CCCceEEeeccCCC--CcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeeccc
Confidence 45678889886554 4789999999999999999999999999999999999999998887655899999999999874
Q ss_pred C---CCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCC
Q 005506 105 T---SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS 181 (693)
Q Consensus 105 ~---~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~ 181 (693)
. ..++|++++.||+|+|||+... .++..+.+|+.+|+|+.|- +..+|.||+.|++|++|+...+.
T Consensus 212 hl~p~~r~las~skDg~vrIWd~~~~----------~~~~~lsgHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~ 279 (480)
T KOG0271|consen 212 HLVPPCRRLASSSKDGSVRIWDTKLG----------TCVRTLSGHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGK 279 (480)
T ss_pred ccCCCccceecccCCCCEEEEEccCc----------eEEEEeccCccceEEEEEc--CCceEEecCCCceEEEEEccchh
Confidence 2 2469999999999999999864 5688899999999999995 45799999999999999988765
Q ss_pred CCCCCC-------------------------------------------------------CCCcccceEEEeccCCcee
Q 005506 182 SCPPAG-------------------------------------------------------SSHQECRNILLDLRCGAKR 206 (693)
Q Consensus 182 ~~~~~~-------------------------------------------------------~~~~~~~~~l~~~~~~~~~ 206 (693)
.+.... ++..+....+|+.... .+
T Consensus 280 ~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~-kk 358 (480)
T KOG0271|consen 280 LCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKS-KK 358 (480)
T ss_pred HHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccc-cc
Confidence 431110 0001111223332221 22
Q ss_pred eecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEE
Q 005506 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT 286 (693)
Q Consensus 207 ~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~ 286 (693)
++..+.+|...|+.+.|||+ +.++|+++-|..|++||.++++.+.++ +||-. .|..|+
T Consensus 359 pi~rmtgHq~lVn~V~fSPd-~r~IASaSFDkSVkLW~g~tGk~lasf--------------------RGHv~-~VYqva 416 (480)
T KOG0271|consen 359 PITRMTGHQALVNHVSFSPD-GRYIASASFDKSVKLWDGRTGKFLASF--------------------RGHVA-AVYQVA 416 (480)
T ss_pred chhhhhchhhheeeEEECCC-ccEEEEeecccceeeeeCCCcchhhhh--------------------hhccc-eeEEEE
Confidence 44556678889999999997 799999999999999999999766555 45555 699999
Q ss_pred EcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCcc
Q 005506 287 FSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGL 336 (693)
Q Consensus 287 fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~g~ 336 (693)
|+.|.+.|++|+.|.++++||+++.+...-+..+.+.+-.+.|+|+...+
T Consensus 417 wsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV 466 (480)
T KOG0271|consen 417 WSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRV 466 (480)
T ss_pred eccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCcee
Confidence 99999999999999999999999965444445555666666788875543
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=2.1e-31 Score=268.90 Aligned_cols=264 Identities=22% Similarity=0.263 Sum_probs=220.7
Q ss_pred hhcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeC
Q 005506 36 LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG 115 (693)
Q Consensus 36 ~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~ 115 (693)
..+.+.+...--|-+.+|..+.|+.++..|||||.+|.++||+..+...+.++ .+|.+.|.++.|+|..++..+|||+.
T Consensus 161 ~~~~~~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l-~gH~~~v~~~~fhP~~~~~~lat~s~ 239 (459)
T KOG0272|consen 161 HLQSLELVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTL-RGHTSRVGAAVFHPVDSDLNLATASA 239 (459)
T ss_pred HhhhhhhhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEE-eccccceeeEEEccCCCccceeeecc
Confidence 34445555555678899999999999999999999999999999999889999 79999999999999843679999999
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCC------------
Q 005506 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC------------ 183 (693)
Q Consensus 116 Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~------------ 183 (693)
||+|++|++... .++..+.+|..+|..++|+| ++++|.|++.|.+-++||+++....
T Consensus 240 Dgtvklw~~~~e----------~~l~~l~gH~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~ 308 (459)
T KOG0272|consen 240 DGTVKLWKLSQE----------TPLQDLEGHLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFS 308 (459)
T ss_pred CCceeeeccCCC----------cchhhhhcchhhheeeeecC-CCceeeecccccchhhcccccchhhHhhcccccccce
Confidence 999999999864 67899999999999999999 7899999999999999999987643
Q ss_pred -------CCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCccccc
Q 005506 184 -------PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK 256 (693)
Q Consensus 184 -------~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~ 256 (693)
....++..++...+||+++|... ....+|..+|.+++|+|+ |..||||+.|++++|||+|+.+.+..
T Consensus 309 iaf~~DGSL~~tGGlD~~~RvWDlRtgr~i--m~L~gH~k~I~~V~fsPN-Gy~lATgs~Dnt~kVWDLR~r~~ly~--- 382 (459)
T KOG0272|consen 309 IAFQPDGSLAATGGLDSLGRVWDLRTGRCI--MFLAGHIKEILSVAFSPN-GYHLATGSSDNTCKVWDLRMRSELYT--- 382 (459)
T ss_pred eEecCCCceeeccCccchhheeecccCcEE--EEecccccceeeEeECCC-ceEEeecCCCCcEEEeeeccccccee---
Confidence 11234445666789999999854 444568999999999996 89999999999999999998654322
Q ss_pred CCCCCCcccccccCccccCCCCccceEEEEEcC-CCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCc
Q 005506 257 RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNG 335 (693)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fsp-dg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~g 335 (693)
.|. |.+ -|+.|.|+| .|.+|++++.|++++||...+......+..|...+-.+..+|+..-
T Consensus 383 -----------ipA------H~n-lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~ 444 (459)
T KOG0272|consen 383 -----------IPA------HSN-LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQA 444 (459)
T ss_pred -----------ccc------ccc-hhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCce
Confidence 233 444 399999999 7899999999999999999998777777777666666667766443
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6e-31 Score=262.12 Aligned_cols=262 Identities=21% Similarity=0.260 Sum_probs=209.5
Q ss_pred ceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 005506 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (693)
Q Consensus 41 ~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~ 120 (693)
.+...+.||.++|.|++|+|+|..||||+.|.++++||+.+..++.+. .+|...|.||+|+|+ +..||+|+.||+|+
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~-KgH~~WVlcvawsPD--gk~iASG~~dg~I~ 182 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTC-KGHKNWVLCVAWSPD--GKKIASGSKDGSIR 182 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceee-cCCccEEEEEEECCC--cchhhccccCCeEE
Confidence 355678899999999999999999999999999999999999999998 799999999999999 79999999999999
Q ss_pred EEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecC----CCcEEEEEeCCCcEEEEeCCCCCCCC------------
Q 005506 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG----NPHVVWSASEDGTLRQHDFRQGSSCP------------ 184 (693)
Q Consensus 121 vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~----~~~~l~Sgs~Dg~V~lwDlr~~~~~~------------ 184 (693)
+||..++. .....+.+|...|++|+|.|- ...+|++++.||.|+|||+..+....
T Consensus 183 lwdpktg~---------~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCv 253 (480)
T KOG0271|consen 183 LWDPKTGQ---------QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCV 253 (480)
T ss_pred EecCCCCC---------cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEE
Confidence 99998754 346778899999999999872 34589999999999999998754321
Q ss_pred ------CCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEc-----------C----------------------
Q 005506 185 ------PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS-----------S---------------------- 225 (693)
Q Consensus 185 ------~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~s-----------p---------------------- 225 (693)
.+.++..++...+|+...|. ......+|...|+.++.+ |
T Consensus 254 rwGG~gliySgS~DrtIkvw~a~dG~--~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~ 331 (480)
T KOG0271|consen 254 RWGGEGLIYSGSQDRTIKVWRALDGK--LCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAV 331 (480)
T ss_pred EEcCCceEEecCCCceEEEEEccchh--HHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHh
Confidence 11223344445555544432 334556777888888877 2
Q ss_pred --CCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcE
Q 005506 226 --TRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHV 303 (693)
Q Consensus 226 --~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V 303 (693)
+.+..|++|+.|.++.+|+....+ .++..+ .+|.. -|+.+.||||++++++++-|..|
T Consensus 332 ~~~~~erlVSgsDd~tlflW~p~~~k------------kpi~rm-------tgHq~-lVn~V~fSPd~r~IASaSFDkSV 391 (480)
T KOG0271|consen 332 LKDSGERLVSGSDDFTLFLWNPFKSK------------KPITRM-------TGHQA-LVNHVSFSPDGRYIASASFDKSV 391 (480)
T ss_pred hccCcceeEEecCCceEEEecccccc------------cchhhh-------hchhh-heeeEEECCCccEEEEeecccce
Confidence 124469999999999999976443 122222 45655 49999999999999999999999
Q ss_pred EEEECCCCCcceEEeecCCCceeEEeccCCCcc
Q 005506 304 YLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGL 336 (693)
Q Consensus 304 ~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~g~ 336 (693)
+|||..+++....+-.|-.++-.++|+.+..-+
T Consensus 392 kLW~g~tGk~lasfRGHv~~VYqvawsaDsRLl 424 (480)
T KOG0271|consen 392 KLWDGRTGKFLASFRGHVAAVYQVAWSADSRLL 424 (480)
T ss_pred eeeeCCCcchhhhhhhccceeEEEEeccCccEE
Confidence 999999998777777777778888888875443
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=4.3e-30 Score=248.53 Aligned_cols=238 Identities=20% Similarity=0.344 Sum_probs=197.6
Q ss_pred cceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEe-------------------------------
Q 005506 40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI------------------------------- 88 (693)
Q Consensus 40 l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l------------------------------- 88 (693)
++..++|+||.+.|.++.|+++.++|+|+|.||.+.|||..+...++.+
T Consensus 45 ~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 45 MRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIY 124 (343)
T ss_pred eeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEE
Confidence 3456899999999999999999999999999999999998764433332
Q ss_pred ----------------ccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEE
Q 005506 89 ----------------ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKK 152 (693)
Q Consensus 89 ----------------~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 152 (693)
..+|++-+.|+.|.++ ..|+|++.|.++.+||++++ ..+..|.+|...|.+
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD---~~ilT~SGD~TCalWDie~g----------~~~~~f~GH~gDV~s 191 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD---NHILTGSGDMTCALWDIETG----------QQTQVFHGHTGDVMS 191 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcCC---CceEecCCCceEEEEEcccc----------eEEEEecCCcccEEE
Confidence 1577777778888775 57788888888888888865 568899999999999
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEE
Q 005506 153 LAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLL 232 (693)
Q Consensus 153 la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~La 232 (693)
|+++|.+++.|+||+.|+..++||+|.+. .+..+++|...|+++.|.|+ +.-|+
T Consensus 192 lsl~p~~~ntFvSg~cD~~aklWD~R~~~-------------------------c~qtF~ghesDINsv~ffP~-G~afa 245 (343)
T KOG0286|consen 192 LSLSPSDGNTFVSGGCDKSAKLWDVRSGQ-------------------------CVQTFEGHESDINSVRFFPS-GDAFA 245 (343)
T ss_pred EecCCCCCCeEEecccccceeeeeccCcc-------------------------eeEeecccccccceEEEccC-CCeee
Confidence 99999899999999999999999999875 23445678889999999997 78999
Q ss_pred EEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCC
Q 005506 233 VGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 233 tgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~ 312 (693)
+|+.|++.|+||+|..+.+..+. +. ....+|++|+||..|++|++|+.|..+.+||.-.++
T Consensus 246 tGSDD~tcRlyDlRaD~~~a~ys-------------~~------~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e 306 (343)
T KOG0286|consen 246 TGSDDATCRLYDLRADQELAVYS-------------HD------SIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGE 306 (343)
T ss_pred ecCCCceeEEEeecCCcEEeeec-------------cC------cccCCceeEEEcccccEEEeeecCCceeEeeccccc
Confidence 99999999999999875543332 11 122369999999999999999999999999999988
Q ss_pred cceEEeecCCCceeEEeccCCCc
Q 005506 313 GRAMRYTVGDASKIMSFTPTLNG 335 (693)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~p~~~g 335 (693)
....++.|+..+..+..+|+..-
T Consensus 307 ~vg~L~GHeNRvScl~~s~DG~a 329 (343)
T KOG0286|consen 307 RVGVLAGHENRVSCLGVSPDGMA 329 (343)
T ss_pred eEEEeeccCCeeEEEEECCCCcE
Confidence 88888887777777777776433
No 7
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=5.1e-31 Score=285.12 Aligned_cols=213 Identities=22% Similarity=0.332 Sum_probs=191.1
Q ss_pred ccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 005506 39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 118 (693)
Q Consensus 39 ~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~ 118 (693)
......+|.||+++|....|+|+.++|+++|.|++|++|.+.+..++... .||..+|+++.|+|. |-+||||+.|++
T Consensus 440 ~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y-~GH~~PVwdV~F~P~--GyYFatas~D~t 516 (707)
T KOG0263|consen 440 SSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIY-KGHLAPVWDVQFAPR--GYYFATASHDQT 516 (707)
T ss_pred CCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEe-cCCCcceeeEEecCC--ceEEEecCCCce
Confidence 34456679999999999999999999999999999999999999999888 699999999999999 799999999999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEE
Q 005506 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (693)
Q Consensus 119 V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~ 198 (693)
-++|..... .|...+.+|...|.|+.|+| +.++++|||.|.+||+||+.++..
T Consensus 517 ArLWs~d~~----------~PlRifaghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~---------------- 569 (707)
T KOG0263|consen 517 ARLWSTDHN----------KPLRIFAGHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNS---------------- 569 (707)
T ss_pred eeeeecccC----------CchhhhcccccccceEEECC-cccccccCCCCceEEEEEcCCCcE----------------
Confidence 999999864 78999999999999999999 889999999999999999998762
Q ss_pred eccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCC
Q 005506 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (693)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (693)
+..+.+|..+|.+++|||. |.+|++|+.||.|.+||+.++.++..+ .+|.
T Consensus 570 ---------VRiF~GH~~~V~al~~Sp~-Gr~LaSg~ed~~I~iWDl~~~~~v~~l--------------------~~Ht 619 (707)
T KOG0263|consen 570 ---------VRIFTGHKGPVTALAFSPC-GRYLASGDEDGLIKIWDLANGSLVKQL--------------------KGHT 619 (707)
T ss_pred ---------EEEecCCCCceEEEEEcCC-CceEeecccCCcEEEEEcCCCcchhhh--------------------hccc
Confidence 2222468899999999996 899999999999999999988655433 4564
Q ss_pred ccceEEEEEcCCCCEEEEEecCCcEEEEECCCCC
Q 005506 279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 279 ~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~ 312 (693)
+ .|.+|.||.+|..|++|+.|.+|++||+....
T Consensus 620 ~-ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 620 G-TIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred C-ceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 4 69999999999999999999999999998743
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=2.9e-31 Score=267.90 Aligned_cols=220 Identities=21% Similarity=0.329 Sum_probs=196.6
Q ss_pred cCcccccchhhhcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCC
Q 005506 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105 (693)
Q Consensus 26 ~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~ 105 (693)
.+..+++|+...+ .++..|+||...|..++|+|+|++|+|++.|.+-++||+.++..+... .||...|++++|.|+
T Consensus 239 ~Dgtvklw~~~~e--~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~Q-EGHs~~v~~iaf~~D- 314 (459)
T KOG0272|consen 239 ADGTVKLWKLSQE--TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQ-EGHSKGVFSIAFQPD- 314 (459)
T ss_pred cCCceeeeccCCC--cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhh-cccccccceeEecCC-
Confidence 3466777764333 678889999999999999999999999999999999999998877766 799999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCC
Q 005506 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP 185 (693)
Q Consensus 106 ~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~ 185 (693)
|.+++||+.|..-+|||++++ .++..+.+|...|.+|+|+| ++..|+|||.|++++|||+|...
T Consensus 315 -GSL~~tGGlD~~~RvWDlRtg----------r~im~L~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r~---- 378 (459)
T KOG0272|consen 315 -GSLAATGGLDSLGRVWDLRTG----------RCIMFLAGHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRMRS---- 378 (459)
T ss_pred -CceeeccCccchhheeecccC----------cEEEEecccccceeeEeECC-CceEEeecCCCCcEEEeeecccc----
Confidence 799999999999999999976 66899999999999999999 88999999999999999999865
Q ss_pred CCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCccc
Q 005506 186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN 265 (693)
Q Consensus 186 ~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~ 265 (693)
.+...+.|...|+.+.|+|..+.+|+|++.|++++||..++..++.++
T Consensus 379 ---------------------~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksL----------- 426 (459)
T KOG0272|consen 379 ---------------------ELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSL----------- 426 (459)
T ss_pred ---------------------cceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhh-----------
Confidence 244566888899999999988999999999999999999988766544
Q ss_pred ccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEE
Q 005506 266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMD 307 (693)
Q Consensus 266 ~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwd 307 (693)
.||.+ .|.++.++|++.++++++.|.+|++|.
T Consensus 427 ---------aGHe~-kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 427 ---------AGHEG-KVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ---------cCCcc-ceEEEEeccCCceEEEeccCceeeecc
Confidence 56776 699999999999999999999999995
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.96 E-value=2.7e-27 Score=227.98 Aligned_cols=242 Identities=21% Similarity=0.276 Sum_probs=199.3
Q ss_pred ccceeEEeccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEECCC-----CcEEEEeccCCCcceEEEEEeeCCCCCEEEE
Q 005506 39 RLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSS-----RKLLHSIETGHSANVFCTKFVPETSDELVVS 112 (693)
Q Consensus 39 ~l~~~~~l~gH~~~V~~l~~s~~-g~~LaSgs~Dg~I~IWd~~~-----~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~s 112 (693)
.+.+..+|+||++.|+.++..+. ...|++++.|.+|.+|++.. |..++.+ .||...|..+..+++ +++.++
T Consensus 4 ~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~-~GHsH~v~dv~~s~d--g~~alS 80 (315)
T KOG0279|consen 4 QLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRL-TGHSHFVSDVVLSSD--GNFALS 80 (315)
T ss_pred hheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeee-eccceEecceEEccC--CceEEe
Confidence 45567789999999999999986 57899999999999998863 5567777 799999999999999 699999
Q ss_pred EeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcc
Q 005506 113 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE 192 (693)
Q Consensus 113 gs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~ 192 (693)
++.|+++++||+..+ ++...|.+|...|.+++|+| +...|+||+.|.+|++|++-.....
T Consensus 81 ~swD~~lrlWDl~~g----------~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~--------- 140 (315)
T KOG0279|consen 81 ASWDGTLRLWDLATG----------ESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKY--------- 140 (315)
T ss_pred ccccceEEEEEecCC----------cEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecccEEE---------
Confidence 999999999999975 56888999999999999999 5678889999999999998654311
Q ss_pred cceEEEeccCCceeeecCCCCCccceEEEEEcCCC-CcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCc
Q 005506 193 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 271 (693)
Q Consensus 193 ~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~-~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (693)
.+ .. ..+...|+|+.|+|.. .-+|++++.|++|++||+++.+....+
T Consensus 141 ---t~-----------~~-~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~----------------- 188 (315)
T KOG0279|consen 141 ---TI-----------HE-DSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTF----------------- 188 (315)
T ss_pred ---EE-----------ec-CCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcc-----------------
Confidence 11 11 1125689999999974 458999999999999999976533222
Q ss_pred cccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCcccccC
Q 005506 272 LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQP 340 (693)
Q Consensus 272 ~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~ 340 (693)
.||.+ .++.+++||||..+++|+.||.++|||++.++. ...+.+..++..++|+|..--+....
T Consensus 189 ---~gh~~-~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~-lysl~a~~~v~sl~fspnrywL~~at 252 (315)
T KOG0279|consen 189 ---IGHSG-YVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN-LYSLEAFDIVNSLCFSPNRYWLCAAT 252 (315)
T ss_pred ---ccccc-cEEEEEECCCCCEEecCCCCceEEEEEccCCce-eEeccCCCeEeeEEecCCceeEeecc
Confidence 34555 599999999999999999999999999999664 55666778889999999865554333
No 10
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.96 E-value=2e-27 Score=228.95 Aligned_cols=214 Identities=20% Similarity=0.257 Sum_probs=179.7
Q ss_pred hhcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeC
Q 005506 36 LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG 115 (693)
Q Consensus 36 ~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~ 115 (693)
....+.+.+.|+||...|+.+..+++|++.+|++.|+++++||+.+++..+.| .+|...|.+++|+|+ ++.++||+.
T Consensus 49 d~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f-~GH~~dVlsva~s~d--n~qivSGSr 125 (315)
T KOG0279|consen 49 DIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRF-VGHTKDVLSVAFSTD--NRQIVSGSR 125 (315)
T ss_pred ccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEE-EecCCceEEEEecCC--CceeecCCC
Confidence 44556678899999999999999999999999999999999999999888888 799999999999999 599999999
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCCceeeccC--CCCeEEEEEecCC-CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcc
Q 005506 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCH--TRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE 192 (693)
Q Consensus 116 Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h--~~~V~~la~sp~~-~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~ 192 (693)
|.+|++|++.. .+..+...+ ..-|.++.|+|.. .-+|++++.|++|++||+++.+.
T Consensus 126 DkTiklwnt~g-----------~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l---------- 184 (315)
T KOG0279|consen 126 DKTIKLWNTLG-----------VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL---------- 184 (315)
T ss_pred cceeeeeeecc-----------cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch----------
Confidence 99999999975 234444433 6789999999963 56889999999999999998652
Q ss_pred cceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCcc
Q 005506 193 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL 272 (693)
Q Consensus 193 ~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (693)
...+.+|...++.+++||+ |.++++|+.||.+.+||++..+.+.++
T Consensus 185 ---------------~~~~~gh~~~v~t~~vSpD-GslcasGgkdg~~~LwdL~~~k~lysl------------------ 230 (315)
T KOG0279|consen 185 ---------------RTTFIGHSGYVNTVTVSPD-GSLCASGGKDGEAMLWDLNEGKNLYSL------------------ 230 (315)
T ss_pred ---------------hhccccccccEEEEEECCC-CCEEecCCCCceEEEEEccCCceeEec------------------
Confidence 2344568889999999998 789999999999999999987543222
Q ss_pred ccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCC
Q 005506 273 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 273 ~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~ 312 (693)
.+.. .|.+++|+|+...|+.+. +..|+|||+.++.
T Consensus 231 ---~a~~-~v~sl~fspnrywL~~at-~~sIkIwdl~~~~ 265 (315)
T KOG0279|consen 231 ---EAFD-IVNSLCFSPNRYWLCAAT-ATSIKIWDLESKA 265 (315)
T ss_pred ---cCCC-eEeeEEecCCceeEeecc-CCceEEEeccchh
Confidence 1222 599999999987766655 4459999999954
No 11
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.95 E-value=1.3e-26 Score=219.73 Aligned_cols=246 Identities=16% Similarity=0.241 Sum_probs=195.1
Q ss_pred CcccccchhhhcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCC
Q 005506 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS 106 (693)
Q Consensus 27 ~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~ 106 (693)
.+.+++++....+..++.++.+|++.|+++.|..+|+.++|||+||+++|||+....+.+.+ .|.++|++|..+|+.
T Consensus 60 ~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~--~~~spVn~vvlhpnQ- 136 (311)
T KOG0315|consen 60 NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY--QHNSPVNTVVLHPNQ- 136 (311)
T ss_pred CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhc--cCCCCcceEEecCCc-
Confidence 37888888777777899999999999999999999999999999999999999986666665 588999999999995
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCC
Q 005506 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA 186 (693)
Q Consensus 107 ~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~ 186 (693)
..|++|..+|.|+|||+...... ......-...|.++.+.| ++.+++.+..-|.+.+|++-.....
T Consensus 137 -teLis~dqsg~irvWDl~~~~c~---------~~liPe~~~~i~sl~v~~-dgsml~a~nnkG~cyvW~l~~~~~~--- 202 (311)
T KOG0315|consen 137 -TELISGDQSGNIRVWDLGENSCT---------HELIPEDDTSIQSLTVMP-DGSMLAAANNKGNCYVWRLLNHQTA--- 202 (311)
T ss_pred -ceEEeecCCCcEEEEEccCCccc---------cccCCCCCcceeeEEEcC-CCcEEEEecCCccEEEEEccCCCcc---
Confidence 78999999999999999965211 111122346899999999 7788888999999999998764322
Q ss_pred CCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccc
Q 005506 187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266 (693)
Q Consensus 187 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~ 266 (693)
....++...+.|...+..+-+||+ +++||+++.|.+++||+....-.
T Consensus 203 ----------------s~l~P~~k~~ah~~~il~C~lSPd-~k~lat~ssdktv~iwn~~~~~k---------------- 249 (311)
T KOG0315|consen 203 ----------------SELEPVHKFQAHNGHILRCLLSPD-VKYLATCSSDKTVKIWNTDDFFK---------------- 249 (311)
T ss_pred ----------------ccceEhhheecccceEEEEEECCC-CcEEEeecCCceEEEEecCCcee----------------
Confidence 112234445677888999999997 79999999999999999886400
Q ss_pred cccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCcee
Q 005506 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKI 326 (693)
Q Consensus 267 ~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~ 326 (693)
..+...+|.. +++.++||.+|+||++++.|+++++||+..++.....-.+..+...
T Consensus 250 ---le~~l~gh~r-WvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc 305 (311)
T KOG0315|consen 250 ---LELVLTGHQR-WVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVC 305 (311)
T ss_pred ---eEEEeecCCc-eEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEE
Confidence 0111134443 8999999999999999999999999999997655544444333333
No 12
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=1.5e-25 Score=240.38 Aligned_cols=252 Identities=17% Similarity=0.239 Sum_probs=190.1
Q ss_pred cccccchhhhcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCC
Q 005506 28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSD 107 (693)
Q Consensus 28 ~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~ 107 (693)
.++-+|......+ +...+||...++|++++|||+++|||++||+|+|||..++-|..++ ..|++.|+.+.|+.. +
T Consensus 330 gQLlVweWqsEsY--VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTF-teHts~Vt~v~f~~~--g 404 (893)
T KOG0291|consen 330 GQLLVWEWQSESY--VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTF-TEHTSGVTAVQFTAR--G 404 (893)
T ss_pred ceEEEEEeeccce--eeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEe-ccCCCceEEEEEEec--C
Confidence 3455665444432 5557899999999999999999999999999999999999999999 899999999999998 7
Q ss_pred CEEEEEeCCCcEEEEEcCCCCC---------CCC-------------------------CCCCCCCceeeccCCCCeEEE
Q 005506 108 ELVVSGAGDAEVRLFNLSRFSG---------RGL-------------------------DDNAITPSALYQCHTRRVKKL 153 (693)
Q Consensus 108 ~~l~sgs~Dg~V~vwdl~~~~~---------~~~-------------------------~~~~~~~~~~~~~h~~~V~~l 153 (693)
+.+++.+.||+|+.||+..-.. ... .....+.+-.+.+|.++|.++
T Consensus 405 ~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l 484 (893)
T KOG0291|consen 405 NVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGL 484 (893)
T ss_pred CEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceee
Confidence 9999999999999999974210 000 111223445678999999999
Q ss_pred EEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEE
Q 005506 154 AVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV 233 (693)
Q Consensus 154 a~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Lat 233 (693)
+|+| .+..|+|++.|.+||+||+-..... ...+ .....+..++|.|+ |..|++
T Consensus 485 ~f~~-~~~~LaS~SWDkTVRiW~if~s~~~---------------------vEtl----~i~sdvl~vsfrPd-G~elaV 537 (893)
T KOG0291|consen 485 SFSP-DGSLLASGSWDKTVRIWDIFSSSGT---------------------VETL----EIRSDVLAVSFRPD-GKELAV 537 (893)
T ss_pred EEcc-ccCeEEeccccceEEEEEeeccCce---------------------eeeE----eeccceeEEEEcCC-CCeEEE
Confidence 9999 6789999999999999998654211 0001 12346789999998 789999
Q ss_pred EeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCC
Q 005506 234 GGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 234 gs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~ 312 (693)
+..||.|.+||......+.++........ -+.........+...+..++.+++|+||..|++|+....|.||++.++-
T Consensus 538 aTldgqItf~d~~~~~q~~~IdgrkD~~~-gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~v 615 (893)
T KOG0291|consen 538 ATLDGQITFFDIKEAVQVGSIDGRKDLSG-GRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGV 615 (893)
T ss_pred EEecceEEEEEhhhceeeccccchhhccc-cccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhh
Confidence 99999999999988776655433211000 0000001111122233469999999999999999999999999999854
No 13
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.95 E-value=4e-27 Score=255.10 Aligned_cols=239 Identities=21% Similarity=0.265 Sum_probs=201.4
Q ss_pred eEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCc-------------------------------EEEEeccC
Q 005506 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-------------------------------LLHSIETG 91 (693)
Q Consensus 43 ~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~-------------------------------~~~~l~~~ 91 (693)
..++..-...|+|..|++++++||.|-.|..|++|.+...+ ...++ .|
T Consensus 371 ~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L-~G 449 (707)
T KOG0263|consen 371 MYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTL-YG 449 (707)
T ss_pred EEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEe-ec
Confidence 44444445679999999999999999999999999987311 11223 69
Q ss_pred CCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCc
Q 005506 92 HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT 171 (693)
Q Consensus 92 h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~ 171 (693)
|.++|+++.|+|+ .++|++|+.|++||+|.+.+. ..+..+++|..+|..+.|+| -+.+|+|+|.|++
T Consensus 450 H~GPVyg~sFsPd--~rfLlScSED~svRLWsl~t~----------s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~t 516 (707)
T KOG0263|consen 450 HSGPVYGCSFSPD--RRFLLSCSEDSSVRLWSLDTW----------SCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQT 516 (707)
T ss_pred CCCceeeeeeccc--ccceeeccCCcceeeeecccc----------eeEEEecCCCcceeeEEecC-CceEEEecCCCce
Confidence 9999999999999 599999999999999999975 56888999999999999999 7899999999999
Q ss_pred EEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCC
Q 005506 172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL 251 (693)
Q Consensus 172 V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~ 251 (693)
-++|......+ +....+|...|.|+.|+|+ .+++++|+.|.+||+||..++.
T Consensus 517 ArLWs~d~~~P-------------------------lRifaghlsDV~cv~FHPN-s~Y~aTGSsD~tVRlWDv~~G~-- 568 (707)
T KOG0263|consen 517 ARLWSTDHNKP-------------------------LRIFAGHLSDVDCVSFHPN-SNYVATGSSDRTVRLWDVSTGN-- 568 (707)
T ss_pred eeeeecccCCc-------------------------hhhhcccccccceEEECCc-ccccccCCCCceEEEEEcCCCc--
Confidence 99999876442 2333467788999999997 7999999999999999999874
Q ss_pred cccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEecc
Q 005506 252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP 331 (693)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p 331 (693)
+++.| .||.. +|++|+|||+|++|++|+.||.|.+||+.++........+...+..+.|+.
T Consensus 569 -----------~VRiF-------~GH~~-~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~ 629 (707)
T KOG0263|consen 569 -----------SVRIF-------TGHKG-PVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSR 629 (707)
T ss_pred -----------EEEEe-------cCCCC-ceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEec
Confidence 45555 55666 799999999999999999999999999999888888888888888899988
Q ss_pred CCCcccccCCc
Q 005506 332 TLNGLELQPPI 342 (693)
Q Consensus 332 ~~~g~~~~~~~ 342 (693)
+.+-++.....
T Consensus 630 dg~vLasgg~D 640 (707)
T KOG0263|consen 630 DGNVLASGGAD 640 (707)
T ss_pred CCCEEEecCCC
Confidence 77665544433
No 14
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.6e-27 Score=235.35 Aligned_cols=247 Identities=19% Similarity=0.287 Sum_probs=207.0
Q ss_pred cCcccccchhhhcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC-CcEEEEeccCCCcceEEEEEeeC
Q 005506 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS-RKLLHSIETGHSANVFCTKFVPE 104 (693)
Q Consensus 26 ~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~-~~~~~~l~~~h~~~I~sv~f~p~ 104 (693)
-+.++++|+.... +++..|+||++.|..|.|+..|++||+++.|-.+++||..+ .++++.+ .+|.-.|.+++|.|.
T Consensus 128 ~d~tikv~D~~tg--~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~-~gh~h~vS~V~f~P~ 204 (406)
T KOG0295|consen 128 EDATIKVFDTETG--ELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSL-IGHEHGVSSVFFLPL 204 (406)
T ss_pred CCceEEEEEccch--hhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHh-cCcccceeeEEEEec
Confidence 3567777775544 44999999999999999999999999999999999999987 4566666 799999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCC
Q 005506 105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP 184 (693)
Q Consensus 105 ~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~ 184 (693)
|.+|++++.|.+|+.|++.++ .++.++.+|..-|..++.+. ++.+|++++.|.+|++|-+.+.+..
T Consensus 205 --gd~ilS~srD~tik~We~~tg----------~cv~t~~~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t~~~k- 270 (406)
T KOG0295|consen 205 --GDHILSCSRDNTIKAWECDTG----------YCVKTFPGHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVATKQCK- 270 (406)
T ss_pred --CCeeeecccccceeEEecccc----------eeEEeccCchHhEEEEEecC-CeeEEEecCCCceEEEEEeccchhh-
Confidence 699999999999999999976 67999999999999999998 7899999999999999998876421
Q ss_pred CCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCC--------------CCcEEEEEeCCCcEEEEecCCCCC
Q 005506 185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST--------------RPHLLLVGGSDAFARLYDRRMLPP 250 (693)
Q Consensus 185 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~--------------~~~~Latgs~Dg~IriwD~r~~~~ 250 (693)
.....|..+|.|++|-|. ++.++++++.|++|++||+.++
T Consensus 271 ------------------------~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg-- 324 (406)
T KOG0295|consen 271 ------------------------AELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG-- 324 (406)
T ss_pred ------------------------hhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC--
Confidence 112244556666666542 3469999999999999999986
Q ss_pred CcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEec
Q 005506 251 LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFT 330 (693)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~ 330 (693)
.|+-++ .+|.+ +|..++|+|.|+||+++..|+++++||+++..+......+.+-...+.|+
T Consensus 325 -----------~cL~tL-------~ghdn-wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh 385 (406)
T KOG0295|consen 325 -----------MCLFTL-------VGHDN-WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFH 385 (406)
T ss_pred -----------eEEEEE-------ecccc-eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecC
Confidence 344443 55666 89999999999999999999999999999998888888888878877777
Q ss_pred cCCC
Q 005506 331 PTLN 334 (693)
Q Consensus 331 p~~~ 334 (693)
.+..
T Consensus 386 ~~~p 389 (406)
T KOG0295|consen 386 KTAP 389 (406)
T ss_pred CCCc
Confidence 6543
No 15
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.95 E-value=1.1e-26 Score=225.94 Aligned_cols=265 Identities=23% Similarity=0.274 Sum_probs=207.8
Q ss_pred eeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC-cEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 005506 42 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (693)
Q Consensus 42 ~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~-~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~ 120 (693)
++..+.||.+.|+.+.|+|+|.+||||+.|..|.+|++... +-..++ .+|.+.|..+.|.++ ++.|++++.|.+|+
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~l-kgHsgAVM~l~~~~d--~s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVL-KGHSGAVMELHGMRD--GSHILSCGTDKTVR 115 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeee-ccccceeEeeeeccC--CCEEEEecCCceEE
Confidence 45667899999999999999999999999999999996533 233345 699999999999999 69999999999999
Q ss_pred EEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCC---------------
Q 005506 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP--------------- 185 (693)
Q Consensus 121 vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~--------------- 185 (693)
.||++++ +.+..++.|..-|..+.....++.++.|++.||++++||+|+......
T Consensus 116 ~wD~~tG----------~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~ 185 (338)
T KOG0265|consen 116 GWDAETG----------KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDT 185 (338)
T ss_pred EEecccc----------eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEeccc
Confidence 9999976 568888999999999997777888999999999999999996543311
Q ss_pred ---CCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCC
Q 005506 186 ---AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP 262 (693)
Q Consensus 186 ---~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~ 262 (693)
..++..+....+|+++.+.. +....+|...|+.+..+|. +..+.+-+.|.++++||+|-..+- .+
T Consensus 186 s~qv~sggIdn~ikvWd~r~~d~--~~~lsGh~DtIt~lsls~~-gs~llsnsMd~tvrvwd~rp~~p~---------~R 253 (338)
T KOG0265|consen 186 SDQVISGGIDNDIKVWDLRKNDG--LYTLSGHADTITGLSLSRY-GSFLLSNSMDNTVRVWDVRPFAPS---------QR 253 (338)
T ss_pred ccceeeccccCceeeeccccCcc--eEEeecccCceeeEEeccC-CCccccccccceEEEEEecccCCC---------Cc
Confidence 11112222346788776653 3445678899999999997 789999999999999999965432 25
Q ss_pred cccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCc
Q 005506 263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNG 335 (693)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~g 335 (693)
|+..|....... ......++|+|+++.+.+|+.|..||+||..+.........+...+..+.|+|...-
T Consensus 254 ~v~if~g~~hnf----eknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~i 322 (338)
T KOG0265|consen 254 CVKIFQGHIHNF----EKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPI 322 (338)
T ss_pred eEEEeecchhhh----hhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcE
Confidence 566553211111 113578899999999999999999999999986555555555567778889987543
No 16
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.95 E-value=1.3e-26 Score=224.39 Aligned_cols=224 Identities=17% Similarity=0.291 Sum_probs=189.9
Q ss_pred CcCcccccchhhhc----ccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEE
Q 005506 25 DVNHSLQMHSSLVR----RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 100 (693)
Q Consensus 25 ~~~~~l~~~~~~i~----~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~ 100 (693)
..++...+++...+ .....++|.||++-+.|+.|-+|+ .|+|+|.|.+..+||+++++.+..+ .+|.+.|.++.
T Consensus 116 GLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f-~GH~gDV~sls 193 (343)
T KOG0286|consen 116 GLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVF-HGHTGDVMSLS 193 (343)
T ss_pred CcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEe-cCCcccEEEEe
Confidence 45566666665433 234667899999999999999865 5889999999999999999999999 89999999999
Q ss_pred EeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 005506 101 FVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180 (693)
Q Consensus 101 f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~ 180 (693)
+.|.. ++.|++|+.|+..++||++.+ ..+++|.+|...|.+|.|.| ++.-|+||++|+++|+||+|..
T Consensus 194 l~p~~-~ntFvSg~cD~~aklWD~R~~----------~c~qtF~ghesDINsv~ffP-~G~afatGSDD~tcRlyDlRaD 261 (343)
T KOG0286|consen 194 LSPSD-GNTFVSGGCDKSAKLWDVRSG----------QCVQTFEGHESDINSVRFFP-SGDAFATGSDDATCRLYDLRAD 261 (343)
T ss_pred cCCCC-CCeEEecccccceeeeeccCc----------ceeEeecccccccceEEEcc-CCCeeeecCCCceeEEEeecCC
Confidence 99953 799999999999999999975 56899999999999999999 7789999999999999999987
Q ss_pred CCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCC
Q 005506 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP 260 (693)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~ 260 (693)
+.. .+........+|++++||.. |++|.+|..|..+.+||.-..+.+..+
T Consensus 262 ~~~-----------------------a~ys~~~~~~gitSv~FS~S-GRlLfagy~d~~c~vWDtlk~e~vg~L------ 311 (343)
T KOG0286|consen 262 QEL-----------------------AVYSHDSIICGITSVAFSKS-GRLLFAGYDDFTCNVWDTLKGERVGVL------ 311 (343)
T ss_pred cEE-----------------------eeeccCcccCCceeEEEccc-ccEEEeeecCCceeEeeccccceEEEe------
Confidence 632 12223344568999999997 799999999999999998765433211
Q ss_pred CCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEE
Q 005506 261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMD 307 (693)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwd 307 (693)
.||.+ .|+++..+|||.-|++|+-|.+++||.
T Consensus 312 --------------~GHeN-RvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 312 --------------AGHEN-RVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred --------------eccCC-eeEEEEECCCCcEEEecchhHheeecC
Confidence 45776 699999999999999999999999994
No 17
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.95 E-value=1.2e-27 Score=240.78 Aligned_cols=237 Identities=19% Similarity=0.284 Sum_probs=193.4
Q ss_pred ccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 005506 39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 118 (693)
Q Consensus 39 ~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~ 118 (693)
.+..+..++.|..+|.++.|+++|.+++||+.+|.|++|+.. ...++.+...|...|.+++|+|+ +..|+||+.||+
T Consensus 127 ~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn-mnnVk~~~ahh~eaIRdlafSpn--DskF~t~SdDg~ 203 (464)
T KOG0284|consen 127 SFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN-MNNVKIIQAHHAEAIRDLAFSPN--DSKFLTCSDDGT 203 (464)
T ss_pred eeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc-hhhhHHhhHhhhhhhheeccCCC--CceeEEecCCCe
Confidence 334455678999999999999999999999999999999975 45566664556699999999997 799999999999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEE
Q 005506 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (693)
Q Consensus 119 V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~ 198 (693)
|+|||.... +....+.+|.-.|++++|+| ...+|+++|.|..|++||.+++..
T Consensus 204 ikiWdf~~~----------kee~vL~GHgwdVksvdWHP-~kgLiasgskDnlVKlWDprSg~c---------------- 256 (464)
T KOG0284|consen 204 IKIWDFRMP----------KEERVLRGHGWDVKSVDWHP-TKGLIASGSKDNLVKLWDPRSGSC---------------- 256 (464)
T ss_pred EEEEeccCC----------chhheeccCCCCcceeccCC-ccceeEEccCCceeEeecCCCcch----------------
Confidence 999999975 44566789999999999999 557999999999999999999863
Q ss_pred eccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCC
Q 005506 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (693)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (693)
+.....|...|..+.|+|+ +++|++++.|..+++||+|+.+.+..+ ++|.
T Consensus 257 ---------l~tlh~HKntVl~~~f~~n-~N~Llt~skD~~~kv~DiR~mkEl~~~--------------------r~Hk 306 (464)
T KOG0284|consen 257 ---------LATLHGHKNTVLAVKFNPN-GNWLLTGSKDQSCKVFDIRTMKELFTY--------------------RGHK 306 (464)
T ss_pred ---------hhhhhhccceEEEEEEcCC-CCeeEEccCCceEEEEehhHhHHHHHh--------------------hcch
Confidence 3344467788999999997 599999999999999999976554333 4565
Q ss_pred ccceEEEEEcCCCC-EEEEEecCCcEEEEECCC-CCcceEEeecCCCceeEEeccCCCcc
Q 005506 279 SLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNH-AGGRAMRYTVGDASKIMSFTPTLNGL 336 (693)
Q Consensus 279 ~~~V~~v~fspdg~-~L~sgs~Dg~V~lwdl~~-~~~~~~~~~~~~~~~~~~~~p~~~g~ 336 (693)
. .|++++|+|-.. .|.+|+.||.|+.|.+.. ......-+.+...+..++|+|-..-+
T Consensus 307 k-dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil 365 (464)
T KOG0284|consen 307 K-DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHIL 365 (464)
T ss_pred h-hheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeE
Confidence 5 599999999654 666778899999999983 22334445666677888899865443
No 18
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.95 E-value=1.4e-25 Score=212.66 Aligned_cols=255 Identities=15% Similarity=0.212 Sum_probs=196.9
Q ss_pred CCcCcccccchhhhcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCc--EEEEeccCCCcceEEEEE
Q 005506 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKF 101 (693)
Q Consensus 24 ~~~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~--~~~~l~~~h~~~I~sv~f 101 (693)
..+++++++|. ..++.+..+++...+.|+.|+..|+++.||+++. ..|++||+.+++ ++.++ .+|..+|++|.|
T Consensus 16 A~YDhTIRfWq--a~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~-e~h~kNVtaVgF 91 (311)
T KOG0315|consen 16 AGYDHTIRFWQ--ALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATF-EGHTKNVTAVGF 91 (311)
T ss_pred ccCcceeeeee--hhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEE-eccCCceEEEEE
Confidence 56778888876 5577899999988899999999999999999987 589999999875 57777 799999999999
Q ss_pred eeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCC
Q 005506 102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS 181 (693)
Q Consensus 102 ~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~ 181 (693)
..+ |+.++||+.||+++|||++.. .+.+.+ .|..+|+++..+| +...|++|..+|.|++||+++..
T Consensus 92 ~~d--grWMyTgseDgt~kIWdlR~~----------~~qR~~-~~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~ 157 (311)
T KOG0315|consen 92 QCD--GRWMYTGSEDGTVKIWDLRSL----------SCQRNY-QHNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENS 157 (311)
T ss_pred eec--CeEEEecCCCceEEEEeccCc----------ccchhc-cCCCCcceEEecC-CcceEEeecCCCcEEEEEccCCc
Confidence 998 799999999999999999964 223344 4789999999999 44566699999999999998764
Q ss_pred CCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCC
Q 005506 182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP 261 (693)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~ 261 (693)
... ...|.....|.++++.|+ +.+|+.+.+.|..++|++-.......+
T Consensus 158 c~~------------------------~liPe~~~~i~sl~v~~d-gsml~a~nnkG~cyvW~l~~~~~~s~l------- 205 (311)
T KOG0315|consen 158 CTH------------------------ELIPEDDTSIQSLTVMPD-GSMLAAANNKGNCYVWRLLNHQTASEL------- 205 (311)
T ss_pred ccc------------------------ccCCCCCcceeeEEEcCC-CcEEEEecCCccEEEEEccCCCccccc-------
Confidence 221 112233468999999998 789999999999999999764322211
Q ss_pred CcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCC-CcceEEeecCCCceeEEeccCCCcc
Q 005506 262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA-GGRAMRYTVGDASKIMSFTPTLNGL 336 (693)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~-~~~~~~~~~~~~~~~~~~~p~~~g~ 336 (693)
..+..| +.|.. .++.+.+||++++|++++.|.+|+||++.+- +....+..+..-.-..+|+.+..-+
T Consensus 206 ~P~~k~-------~ah~~-~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~Yl 273 (311)
T KOG0315|consen 206 EPVHKF-------QAHNG-HILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYL 273 (311)
T ss_pred eEhhhe-------ecccc-eEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEE
Confidence 112222 33444 6999999999999999999999999999986 2233333333344455566554433
No 19
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=5.5e-26 Score=213.80 Aligned_cols=258 Identities=20% Similarity=0.262 Sum_probs=203.8
Q ss_pred eEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 005506 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (693)
Q Consensus 43 ~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vw 122 (693)
.+.|.+|.++|+.+.|+-+|++.++++.|++|++|++..+.++++. .+|...|..++.+.+ +..|++|+.|..|.+|
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktY-sghG~EVlD~~~s~D--nskf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTY-SGHGHEVLDAALSSD--NSKFASCGGDKAVQVW 86 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeee-cCCCceeeecccccc--ccccccCCCCceEEEE
Confidence 5678899999999999999999999999999999999999999999 899999999999888 5899999999999999
Q ss_pred EcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCC---------------
Q 005506 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG--------------- 187 (693)
Q Consensus 123 dl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~--------------- 187 (693)
|+.++ +.+..+.+|...|+.++|+. ...++++|+.|.+|++||.|+...-|...
T Consensus 87 DV~TG----------kv~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~ 155 (307)
T KOG0316|consen 87 DVNTG----------KVDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE 155 (307)
T ss_pred EcccC----------eeeeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc
Confidence 99976 56889999999999999998 77899999999999999999865433211
Q ss_pred ----CCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCc
Q 005506 188 ----SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC 263 (693)
Q Consensus 188 ----~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~ 263 (693)
.+..++....++++.|... .. .-..+|+|++|+++ ++..++++.|+++|+.|..+++.+.++
T Consensus 156 heIvaGS~DGtvRtydiR~G~l~--sD--y~g~pit~vs~s~d-~nc~La~~l~stlrLlDk~tGklL~sY--------- 221 (307)
T KOG0316|consen 156 HEIVAGSVDGTVRTYDIRKGTLS--SD--YFGHPITSVSFSKD-GNCSLASSLDSTLRLLDKETGKLLKSY--------- 221 (307)
T ss_pred cEEEeeccCCcEEEEEeecceee--hh--hcCCcceeEEecCC-CCEEEEeeccceeeecccchhHHHHHh---------
Confidence 1122233334455544321 11 12347999999997 789999999999999999988765544
Q ss_pred ccccccCccccCCCCcc-ceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCC-ceeEEeccCCCccccc
Q 005506 264 VNYFCPMHLSEHGRSSL-HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDA-SKIMSFTPTLNGLELQ 339 (693)
Q Consensus 264 ~~~~~~~~~~~~~~~~~-~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~-~~~~~~~p~~~g~~~~ 339 (693)
.||.+. .-..++++....++++|+.||.|++||+........+..+..+ +..+.++|....+-.+
T Consensus 222 -----------kGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A 288 (307)
T KOG0316|consen 222 -----------KGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITA 288 (307)
T ss_pred -----------cccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEe
Confidence 223221 2456788888899999999999999999996655555444444 5677788876554333
No 20
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=7.1e-26 Score=250.69 Aligned_cols=244 Identities=27% Similarity=0.385 Sum_probs=199.0
Q ss_pred eeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEC-CCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 005506 42 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSY-SSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (693)
Q Consensus 42 ~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~-~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~ 120 (693)
+..++.+|...|++++|+|+|+++++|+.|++|+|||+ ..+..++++ .+|...|++++|+|. ++++++|+.|++|+
T Consensus 195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l-~gH~~~v~~~~f~p~--g~~i~Sgs~D~tvr 271 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTL-KGHSTYVTSVAFSPD--GNLLVSGSDDGTVR 271 (456)
T ss_pred hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEe-cCCCCceEEEEecCC--CCEEEEecCCCcEE
Confidence 67778999999999999999999999999999999999 555888888 699999999999999 59999999999999
Q ss_pred EEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEec
Q 005506 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (693)
Q Consensus 121 vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~ 200 (693)
|||++.. +++..+.+|...|++++|++ ++++|++++.||.|++||+.++... |..
T Consensus 272 iWd~~~~----------~~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~---------~~~----- 326 (456)
T KOG0266|consen 272 IWDVRTG----------ECVRKLKGHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKL---------CLK----- 326 (456)
T ss_pred EEeccCC----------eEEEeeeccCCceEEEEECC-CCCEEEEcCCCccEEEEECCCCcee---------eee-----
Confidence 9999974 67899999999999999999 7789999999999999999987621 000
Q ss_pred cCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCc-
Q 005506 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS- 279 (693)
Q Consensus 201 ~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 279 (693)
.+....... .++++.|+|+ +.++++++.|+.+++||++.+.....+ .+|..
T Consensus 327 ------~~~~~~~~~-~~~~~~fsp~-~~~ll~~~~d~~~~~w~l~~~~~~~~~--------------------~~~~~~ 378 (456)
T KOG0266|consen 327 ------LLSGAENSA-PVTSVQFSPN-GKYLLSASLDRTLKLWDLRSGKSVGTY--------------------TGHSNL 378 (456)
T ss_pred ------cccCCCCCC-ceeEEEECCC-CcEEEEecCCCeEEEEEccCCcceeee--------------------cccCCc
Confidence 111111223 6899999997 799999999999999999987543322 12222
Q ss_pred -cceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeec-CCCceeEEeccCCCcccccCC
Q 005506 280 -LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV-GDASKIMSFTPTLNGLELQPP 341 (693)
Q Consensus 280 -~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~-~~~~~~~~~~p~~~g~~~~~~ 341 (693)
..+.+..+++.+.++++|+.|+.|++||+.++........+ ......+.++|..+.+.....
T Consensus 379 ~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~ 442 (456)
T KOG0266|consen 379 VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSF 442 (456)
T ss_pred ceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCc
Confidence 14566677899999999999999999999996666555555 455567778887776655543
No 21
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.2e-25 Score=226.29 Aligned_cols=206 Identities=19% Similarity=0.235 Sum_probs=164.8
Q ss_pred eEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCc---EEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 005506 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (693)
Q Consensus 43 ~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~---~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V 119 (693)
.++|..|++.|+-+.||++|++|||++.|.+..||.+.... ..+++ .+|..+|..+.|+|+ +++|++|+.|..+
T Consensus 217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tl-vgh~~~V~yi~wSPD--dryLlaCg~~e~~ 293 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTL-VGHSQPVSYIMWSPD--DRYLLACGFDEVL 293 (519)
T ss_pred hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeee-ecccCceEEEEECCC--CCeEEecCchHhe
Confidence 45678999999999999999999999999999999876443 45666 799999999999999 6999999999999
Q ss_pred EEEEcCCCCCCCCCCCCCCCceee-ccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEE
Q 005506 120 RLFNLSRFSGRGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (693)
Q Consensus 120 ~vwdl~~~~~~~~~~~~~~~~~~~-~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~ 198 (693)
.+||+.++. ....+ .+|...+.+.+|.| ++..|++|+.|++|..||+.....- -|
T Consensus 294 ~lwDv~tgd----------~~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~~~-------------~W 349 (519)
T KOG0293|consen 294 SLWDVDTGD----------LRHLYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGNILG-------------NW 349 (519)
T ss_pred eeccCCcch----------hhhhcccCcCCCcceeEEcc-CCceeEecCCCCcEEEecCCcchhh-------------cc
Confidence 999999753 22222 23568999999999 6678899999999999999764310 00
Q ss_pred eccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCC
Q 005506 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (693)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (693)
. + .....|.++++.++ ++++++.+.|..|++|++.+..... .. ..
T Consensus 350 ~---g---------vr~~~v~dlait~D-gk~vl~v~~d~~i~l~~~e~~~dr~-------------li---------se 394 (519)
T KOG0293|consen 350 E---G---------VRDPKVHDLAITYD-GKYVLLVTVDKKIRLYNREARVDRG-------------LI---------SE 394 (519)
T ss_pred c---c---------cccceeEEEEEcCC-CcEEEEEecccceeeechhhhhhhc-------------cc---------cc
Confidence 0 0 11245889999998 6888888899999999987643211 00 11
Q ss_pred ccceEEEEEcCCCCEEEEEecCCcEEEEECCC
Q 005506 279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 279 ~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~ 310 (693)
..+|+++++|.+|+++++.-.+..|++||+..
T Consensus 395 ~~~its~~iS~d~k~~LvnL~~qei~LWDl~e 426 (519)
T KOG0293|consen 395 EQPITSFSISKDGKLALVNLQDQEIHLWDLEE 426 (519)
T ss_pred cCceeEEEEcCCCcEEEEEcccCeeEEeecch
Confidence 12699999999999999999999999999775
No 22
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.94 E-value=1e-25 Score=230.45 Aligned_cols=247 Identities=18% Similarity=0.246 Sum_probs=202.1
Q ss_pred cCcccccchhhhcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCC
Q 005506 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105 (693)
Q Consensus 26 ~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~ 105 (693)
++..+++|. ....++.+|..|.++|.+|.|+..|++|++++.|+++.|||..++.....+ .-|..+-.+|.|..+
T Consensus 255 ~~G~~riw~---~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f-~~~s~~~lDVdW~~~- 329 (524)
T KOG0273|consen 255 EDGEARIWN---KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQF-EFHSAPALDVDWQSN- 329 (524)
T ss_pred cCcEEEEEe---cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEee-eeccCCccceEEecC-
Confidence 334555554 445667788999999999999999999999999999999999999888877 678888889999876
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCC
Q 005506 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP 185 (693)
Q Consensus 106 ~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~ 185 (693)
..|++++.|+.|+|+.+... .|+.++.+|...|.+|.|+| .+.+|+|++.|+++++|.+.....+
T Consensus 330 --~~F~ts~td~~i~V~kv~~~----------~P~~t~~GH~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~~~~~-- 394 (524)
T KOG0273|consen 330 --DEFATSSTDGCIHVCKVGED----------RPVKTFIGHHGEVNALKWNP-TGSLLASCSDDGTLKIWSMGQSNSV-- 394 (524)
T ss_pred --ceEeecCCCceEEEEEecCC----------CcceeeecccCceEEEEECC-CCceEEEecCCCeeEeeecCCCcch--
Confidence 68999999999999999864 78999999999999999999 6689999999999999998765422
Q ss_pred CCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCC--------CcEEEEEeCCCcEEEEecCCCCCCcccccC
Q 005506 186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR--------PHLLLVGGSDAFARLYDRRMLPPLTSCQKR 257 (693)
Q Consensus 186 ~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~--------~~~Latgs~Dg~IriwD~r~~~~~~~~~~~ 257 (693)
.....|...|..+.|+|.+ +..+++++.|++|++||+..+.++..+
T Consensus 395 -----------------------~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f--- 448 (524)
T KOG0273|consen 395 -----------------------HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL--- 448 (524)
T ss_pred -----------------------hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEee---
Confidence 2233456677777777753 468999999999999999988665443
Q ss_pred CCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCccc
Q 005506 258 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLE 337 (693)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~ 337 (693)
..|.. +|.+|+|+|+|++|++|+.||.|.+|++++++ .-..+.....+..++|+...+.+.
T Consensus 449 -----------------~kH~~-pVysvafS~~g~ylAsGs~dg~V~iws~~~~~-l~~s~~~~~~Ifel~Wn~~G~kl~ 509 (524)
T KOG0273|consen 449 -----------------MKHQE-PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK-LVKSYQGTGGIFELCWNAAGDKLG 509 (524)
T ss_pred -----------------ccCCC-ceEEEEecCCCcEEEecCCCCeeEeccccchh-eeEeecCCCeEEEEEEcCCCCEEE
Confidence 23444 79999999999999999999999999999965 333444455567788887765553
No 23
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.94 E-value=2.2e-26 Score=227.82 Aligned_cols=216 Identities=19% Similarity=0.260 Sum_probs=186.7
Q ss_pred ccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 005506 39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 118 (693)
Q Consensus 39 ~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~ 118 (693)
..++.+.+.||.+-|.|+++.|.+.+|+||+.|++|+|||+.++++..++ +||...|..|++++- ..++++++.|+.
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltl-tGhi~~vr~vavS~r--HpYlFs~gedk~ 216 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTL-TGHIETVRGVAVSKR--HPYLFSAGEDKQ 216 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEee-cchhheeeeeeeccc--CceEEEecCCCe
Confidence 45677889999999999999999999999999999999999999999999 899999999999998 489999999999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEE
Q 005506 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (693)
Q Consensus 119 V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~ 198 (693)
|+.||+..+ +.+..+.+|-+.|.+++.+| .-..|+||+.|.++|+||+|+..
T Consensus 217 VKCwDLe~n----------kvIR~YhGHlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~----------------- 268 (460)
T KOG0285|consen 217 VKCWDLEYN----------KVIRHYHGHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRA----------------- 268 (460)
T ss_pred eEEEechhh----------hhHHHhccccceeEEEeccc-cceeEEecCCcceEEEeeecccc-----------------
Confidence 999999975 66889999999999999999 55789999999999999999865
Q ss_pred eccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCC
Q 005506 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (693)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (693)
.+....+|...|.++.+.|.++ .+++|+.|++|++||++.++....+ .|.
T Consensus 269 --------~V~~l~GH~~~V~~V~~~~~dp-qvit~S~D~tvrlWDl~agkt~~tl---------------------t~h 318 (460)
T KOG0285|consen 269 --------SVHVLSGHTNPVASVMCQPTDP-QVITGSHDSTVRLWDLRAGKTMITL---------------------THH 318 (460)
T ss_pred --------eEEEecCCCCcceeEEeecCCC-ceEEecCCceEEEeeeccCceeEee---------------------ecc
Confidence 2334457888999999999865 7999999999999999987643222 133
Q ss_pred ccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceE
Q 005506 279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM 316 (693)
Q Consensus 279 ~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~ 316 (693)
...|.+++.+|....+++++.| .|+-|++..+....-
T Consensus 319 kksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~n 355 (460)
T KOG0285|consen 319 KKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQN 355 (460)
T ss_pred cceeeEEecCCchhhhhccCCc-cceeccCCccchhhc
Confidence 3369999999999888888776 789999998754433
No 24
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.4e-25 Score=213.73 Aligned_cols=220 Identities=21% Similarity=0.306 Sum_probs=185.0
Q ss_pred ccceeEEeccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEECCC---CcEEEEeccCCCcceEEEEEeeCCCCCEEEEEe
Q 005506 39 RLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSS---RKLLHSIETGHSANVFCTKFVPETSDELVVSGA 114 (693)
Q Consensus 39 ~l~~~~~l~gH~~~V~~l~~s~~-g~~LaSgs~Dg~I~IWd~~~---~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs 114 (693)
++..++.++||.+.|..++|+|- |.+||||+.|+.|+||+... ..+...+..+|+..|.+++|+|. |++|++|+
T Consensus 3 ~l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~--g~~La~aS 80 (312)
T KOG0645|consen 3 RLILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPH--GRYLASAS 80 (312)
T ss_pred cceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCC--CcEEEEee
Confidence 36678899999999999999997 88999999999999999884 45666777789999999999999 79999999
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccc
Q 005506 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (693)
Q Consensus 115 ~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~ 194 (693)
.|.++.||.-.... .+++.++.+|...|++++|++ ++++|||++.|+.|-+|.+.... ..+|.
T Consensus 81 FD~t~~Iw~k~~~e--------fecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~dedd--------Efec~ 143 (312)
T KOG0645|consen 81 FDATVVIWKKEDGE--------FECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDD--------EFECI 143 (312)
T ss_pred ccceEEEeecCCCc--------eeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCC--------cEEEE
Confidence 99999999776432 367899999999999999999 88999999999999999987543 22333
Q ss_pred eEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCcccc
Q 005506 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 274 (693)
Q Consensus 195 ~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (693)
.+ ...|...|+.+.|+|. ..+|++++.|.+|++|....... =.|++++
T Consensus 144 aV--------------L~~HtqDVK~V~WHPt-~dlL~S~SYDnTIk~~~~~~ddd----------W~c~~tl------- 191 (312)
T KOG0645|consen 144 AV--------------LQEHTQDVKHVIWHPT-EDLLFSCSYDNTIKVYRDEDDDD----------WECVQTL------- 191 (312)
T ss_pred ee--------------eccccccccEEEEcCC-cceeEEeccCCeEEEEeecCCCC----------eeEEEEe-------
Confidence 22 3367788999999997 57999999999999998763211 1345554
Q ss_pred CCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCC
Q 005506 275 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 275 ~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~ 310 (693)
.+|.+ .|.+++|++.|..|++++.|++|+||-..+
T Consensus 192 ~g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~ 226 (312)
T KOG0645|consen 192 DGHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRLYT 226 (312)
T ss_pred cCccc-eEEEEEecCCCceEEEecCCcceEeeeecc
Confidence 55665 699999999999999999999999998664
No 25
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=4e-25 Score=244.29 Aligned_cols=231 Identities=16% Similarity=0.280 Sum_probs=173.5
Q ss_pred EeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEECCCCc-------EEEEeccCCCcceEEEEEeeCCCCCEEEEEeCC
Q 005506 45 ELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRK-------LLHSIETGHSANVFCTKFVPETSDELVVSGAGD 116 (693)
Q Consensus 45 ~l~gH~~~V~~l~~s~-~g~~LaSgs~Dg~I~IWd~~~~~-------~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~D 116 (693)
.|.||.+.|++++|+| ++.+||||+.|++|+|||+.++. .+..+ .+|...|.+++|+|.. +++|++|+.|
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L-~gH~~~V~~l~f~P~~-~~iLaSgs~D 147 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHL-QGHTKKVGIVSFHPSA-MNVLASAGAD 147 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEe-cCCCCcEEEEEeCcCC-CCEEEEEeCC
Confidence 5789999999999999 88999999999999999997652 45566 7999999999999984 4799999999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceE
Q 005506 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (693)
Q Consensus 117 g~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~ 196 (693)
++|+|||+... ..+..+.+|...|.+++|+| ++.+|++++.||+|++||+++++..
T Consensus 148 gtVrIWDl~tg----------~~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v------------- 203 (493)
T PTZ00421 148 MVVNVWDVERG----------KAVEVIKCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIV------------- 203 (493)
T ss_pred CEEEEEECCCC----------eEEEEEcCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEE-------------
Confidence 99999999864 45677888999999999999 6789999999999999999986521
Q ss_pred EEeccCCceeeecCCCCCc-cceEEEEEcCCCCcEEEEE---eCCCcEEEEecCCCCCCcccccCCCCCCcccccccCcc
Q 005506 197 LLDLRCGAKRSLADPPKQT-LSLKSCDISSTRPHLLLVG---GSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL 272 (693)
Q Consensus 197 l~~~~~~~~~~l~~~~~~~-~~v~sl~~sp~~~~~Latg---s~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (693)
..+ ..|. ..+..+.|.|+.+.++.+| +.|+.|++||+++.... +...
T Consensus 204 -~tl-----------~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p------------~~~~----- 254 (493)
T PTZ00421 204 -SSV-----------EAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASP------------YSTV----- 254 (493)
T ss_pred -EEE-----------ecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCc------------eeEe-----
Confidence 000 1121 1234677888754444444 24899999999865311 1110
Q ss_pred ccCCCCccceEEEEEcCCCCEEEEEe-cCCcEEEEECCCCCcceE-EeecCCCceeEEeccC
Q 005506 273 SEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHAGGRAM-RYTVGDASKIMSFTPT 332 (693)
Q Consensus 273 ~~~~~~~~~V~~v~fspdg~~L~sgs-~Dg~V~lwdl~~~~~~~~-~~~~~~~~~~~~~~p~ 332 (693)
..+....+....|++++.+|++++ +|+.|++||+.++..... .+....+.+.+++.|.
T Consensus 255 --~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 255 --DLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred --ccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 011122466778999999999887 599999999998653322 2333456667777774
No 26
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=1.8e-25 Score=239.70 Aligned_cols=371 Identities=15% Similarity=0.157 Sum_probs=246.3
Q ss_pred cccccchhhhcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCc----EEEEeccCCCcceEEEEEee
Q 005506 28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK----LLHSIETGHSANVFCTKFVP 103 (693)
Q Consensus 28 ~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~----~~~~l~~~h~~~I~sv~f~p 103 (693)
..++++. .....+. .+.||+..|.+|....+|-+|+|||.|.+|++|.++.+. ++... .+|.+.|.+|+++.
T Consensus 346 ~~lr~y~--~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~-~gH~~svgava~~~ 421 (775)
T KOG0319|consen 346 PELRLYT--LPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQA-NGHTNSVGAVAGSK 421 (775)
T ss_pred CceEEEe--cCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhh-cccccccceeeecc
Confidence 4555552 2223333 789999999999976788999999999999999884432 33334 69999999999976
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCC
Q 005506 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (693)
Q Consensus 104 ~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~ 183 (693)
.. ..+|++++.|+++++|++........ .+......+..+|...|++++++| +..+|+|||.|++.++|++....
T Consensus 422 ~~-asffvsvS~D~tlK~W~l~~s~~~~~-~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~-- 496 (775)
T KOG0319|consen 422 LG-ASFFVSVSQDCTLKLWDLPKSKETAF-PIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLR-- 496 (775)
T ss_pred cC-ccEEEEecCCceEEEecCCCcccccc-cceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCce--
Confidence 64 68999999999999999986221111 111122234567999999999999 77999999999999999998533
Q ss_pred CCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCc
Q 005506 184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC 263 (693)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~ 263 (693)
.+....+|...|.|+.|+|. .++++|++.|++|+||.+.+. .|
T Consensus 497 -----------------------l~~vLsGH~RGvw~V~Fs~~-dq~laT~SgD~TvKIW~is~f-------------SC 539 (775)
T KOG0319|consen 497 -----------------------LLGVLSGHTRGVWCVSFSKN-DQLLATCSGDKTVKIWSISTF-------------SC 539 (775)
T ss_pred -----------------------EEEEeeCCccceEEEEeccc-cceeEeccCCceEEEEEeccc-------------ee
Confidence 12233477889999999997 689999999999999999986 57
Q ss_pred ccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCcccccCCcc
Q 005506 264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIH 343 (693)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~ 343 (693)
+++| .||.. .|..+.|-.+|+.|++++.||-|+||++.+..+...+-.|.+.+..+..+|..+.+......+
T Consensus 540 lkT~-------eGH~~-aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg 611 (775)
T KOG0319|consen 540 LKTF-------EGHTS-AVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDG 611 (775)
T ss_pred eeee-------cCccc-eeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCe
Confidence 7777 67777 699999999999999999999999999999888887777766666666666554322223333
Q ss_pred cccccccccccccccCcchhhhHHHHHHhhhhcCCChhHHHH--hhHHHHhcccCCCCCcchhhhhhhHH-HHHHhcccc
Q 005506 344 DFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIE--ACNEVLEGHLSGIGPMLRHECLCIRA-ALLLKRKWK 420 (693)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~a~~lk~~gn~~~~~g~~y~~Ai~--~Y~~ai~~~~~~~~~~~~~~~~~NRA-~~~lk~~~~ 420 (693)
.+....... .....+..++.++...++++.+..+. -|++|+-+.-.. .+ +.+..+-- ++|-+|.
T Consensus 612 ~i~~wkD~T-------e~~~~ee~~K~~eaieq~QeL~n~l~~~~~~~A~~LA~tL-d~---P~~~f~vi~~~~r~r~-- 678 (775)
T KOG0319|consen 612 RIIFWKDVT-------EEEQNEEQEKREEAIEQEQELENLLSQKRYTKAFVLALTL-DK---PHLVFTVINALYRERD-- 678 (775)
T ss_pred EEEEeecCc-------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHhhc-cC---chhHHHHHHHHHhcCC--
Confidence 332222111 12222223333333333332322222 355555433211 11 11112211 3343432
Q ss_pred CcHHHHHHhHhHhhccCCCCcchhhhHHHHHHH-hccHHHHHHHHHHHccc
Q 005506 421 NDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQ-LCKYKEALDFAIAAQCL 470 (693)
Q Consensus 421 ~d~~~Al~Dc~~Al~l~p~~~KA~~r~a~al~~-l~~~~eA~~~~~~~~~~ 470 (693)
.+-|.+. ...|+-+-++++++.....-. -+....|-..+..++..
T Consensus 679 ---~e~l~~a--v~~L~~dq~~~Ll~~~~~WnTnsk~c~vaQ~vL~~~l~~ 724 (775)
T KOG0319|consen 679 ---PEELGQA--VFRLNEDQPEALLQFVVKWNTNSKTCHVAQRVLYEILKR 724 (775)
T ss_pred ---cHHHHHH--HHHhhhhhHHHHHHHHHHhcCCcchhHHHHHHHHHHHhc
Confidence 1223322 235566667788877766644 34445555556555544
No 27
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.94 E-value=2.5e-26 Score=235.97 Aligned_cols=255 Identities=20% Similarity=0.318 Sum_probs=201.4
Q ss_pred ceeEEeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEECCC-CcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 005506 41 SQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSS-RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 118 (693)
Q Consensus 41 ~~~~~l~gH~~~V~~l~~s~-~g~~LaSgs~Dg~I~IWd~~~-~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~ 118 (693)
++++++.||+..|+++.|.| .+.+|++|+.|+.|+||++-. +++++++ .+|..+|.+++|++. |..|+|++.|+.
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf-~gH~k~Vrd~~~s~~--g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTF-KGHRKPVRDASFNNC--GTSFLSASFDRF 281 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhh-hcchhhhhhhhcccc--CCeeeeeeccee
Confidence 46788999999999999999 899999999999999999876 7899999 899999999999998 799999999999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEE
Q 005506 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (693)
Q Consensus 119 V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~ 198 (693)
|++||++++ ..+..+. -...++++.|+|++.++|++|+.|+.|+.||+|+++.+
T Consensus 282 lKlwDtETG----------~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvv--------------- 335 (503)
T KOG0282|consen 282 LKLWDTETG----------QVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVV--------------- 335 (503)
T ss_pred eeeeccccc----------eEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHH---------------
Confidence 999999976 3344443 34578999999988899999999999999999998632
Q ss_pred eccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccC-CCCCCcccc------cc---
Q 005506 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR-MSPPPCVNY------FC--- 268 (693)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~-~~~~~~~~~------~~--- 268 (693)
.....|...|..+.|-+. +..+++.+.|+.|+||+.+...++...... +..-+|+.. +.
T Consensus 336 ----------qeYd~hLg~i~~i~F~~~-g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs 404 (503)
T KOG0282|consen 336 ----------QEYDRHLGAILDITFVDE-GRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQS 404 (503)
T ss_pred ----------HHHHhhhhheeeeEEccC-CceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhc
Confidence 233345678899999996 789999999999999999877655432211 111111110 00
Q ss_pred ------------cCcc----ccCCCC-ccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEecc
Q 005506 269 ------------PMHL----SEHGRS-SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP 331 (693)
Q Consensus 269 ------------~~~~----~~~~~~-~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p 331 (693)
+..+ ...||. .+.-..|.|||||++|++|.+||.+++||-++-+.....-.+..+...+.|+|
T Consensus 405 ~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP 484 (503)
T KOG0282|consen 405 MDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHP 484 (503)
T ss_pred cCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecC
Confidence 0000 002332 11356799999999999999999999999999776666667778888999999
Q ss_pred CCCc
Q 005506 332 TLNG 335 (693)
Q Consensus 332 ~~~g 335 (693)
....
T Consensus 485 ~e~S 488 (503)
T KOG0282|consen 485 VEPS 488 (503)
T ss_pred CCcc
Confidence 7543
No 28
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.94 E-value=1.4e-26 Score=232.95 Aligned_cols=226 Identities=22% Similarity=0.366 Sum_probs=189.0
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCC
Q 005506 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (693)
Q Consensus 50 ~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~ 129 (693)
..+|+.+.|.|+|+.|++|+..|-+.+|+..+..... +.+.|..+|.++.|+++ +..++||..+|.|++|+.+..
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEt-ilQaHDs~Vr~m~ws~~--g~wmiSgD~gG~iKyWqpnmn-- 170 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFET-ILQAHDSPVRTMKWSHN--GTWMISGDKGGMIKYWQPNMN-- 170 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHH-HhhhhcccceeEEEccC--CCEEEEcCCCceEEecccchh--
Confidence 4589999999999999999999999999975443333 34799999999999998 799999999999999999863
Q ss_pred CCCCCCCCCCceeeccCC-CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeee
Q 005506 130 RGLDDNAITPSALYQCHT-RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 208 (693)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~-~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 208 (693)
.++.+++|. ..|++++|+| +...|+|++.||+|+|||.+..+.- .+
T Consensus 171 ---------nVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee-----------~v------------ 217 (464)
T KOG0284|consen 171 ---------NVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEE-----------RV------------ 217 (464)
T ss_pred ---------hhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchh-----------he------------
Confidence 356666665 8999999999 6678889999999999999876521 01
Q ss_pred cCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEc
Q 005506 209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS 288 (693)
Q Consensus 209 ~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fs 288 (693)
..+|.-.|++++|+|.. .++++|+.|..|++||.+++. |+.+. ++|.+ .|+.+.|+
T Consensus 218 --L~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~-------------cl~tl-------h~HKn-tVl~~~f~ 273 (464)
T KOG0284|consen 218 --LRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGS-------------CLATL-------HGHKN-TVLAVKFN 273 (464)
T ss_pred --eccCCCCcceeccCCcc-ceeEEccCCceeEeecCCCcc-------------hhhhh-------hhccc-eEEEEEEc
Confidence 13667789999999985 699999999999999999985 44333 55666 59999999
Q ss_pred CCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCccc
Q 005506 289 PNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLE 337 (693)
Q Consensus 289 pdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~ 337 (693)
|++.+|++++.|..+++||+++.+.....-.+..-...+.|+|-..++-
T Consensus 274 ~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lf 322 (464)
T KOG0284|consen 274 PNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLF 322 (464)
T ss_pred CCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccce
Confidence 9999999999999999999997665666666777888899999877763
No 29
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.94 E-value=1.9e-26 Score=227.33 Aligned_cols=218 Identities=18% Similarity=0.332 Sum_probs=183.4
Q ss_pred CcccccchhhhcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCC
Q 005506 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS 106 (693)
Q Consensus 27 ~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~ 106 (693)
++++++|+ ...+.+.+.|.||+|.|.||.|. .+.|+|||.|.+|+|||+++++++.++ .+|...|..+.|+.
T Consensus 216 DnTikiWD--~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tl-ihHceaVLhlrf~n--- 287 (499)
T KOG0281|consen 216 DNTIKIWD--KNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTL-IHHCEAVLHLRFSN--- 287 (499)
T ss_pred cCceEEec--cccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHH-hhhcceeEEEEEeC---
Confidence 47778876 56788899999999999999996 459999999999999999999999998 79999999999984
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCC
Q 005506 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA 186 (693)
Q Consensus 107 ~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~ 186 (693)
.+++|++.|.+|.|||+..++. +.....+.+|...|..+.|. .++|+|++.|.+|++|++.+.+.
T Consensus 288 -g~mvtcSkDrsiaVWdm~sps~-------it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikvW~~st~ef---- 352 (499)
T KOG0281|consen 288 -GYMVTCSKDRSIAVWDMASPTD-------ITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWSTSTCEF---- 352 (499)
T ss_pred -CEEEEecCCceeEEEeccCchH-------HHHHHHHhhhhhheeeeccc---cceEEEecCCceEEEEeccceee----
Confidence 5999999999999999986531 24567788999999999995 46999999999999999988762
Q ss_pred CCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccc
Q 005506 187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266 (693)
Q Consensus 187 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~ 266 (693)
+....+|...|.|+.+. ++++++|++|.+||+||+..+ .|+..
T Consensus 353 ---------------------vRtl~gHkRGIAClQYr---~rlvVSGSSDntIRlwdi~~G-------------~cLRv 395 (499)
T KOG0281|consen 353 ---------------------VRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECG-------------ACLRV 395 (499)
T ss_pred ---------------------ehhhhcccccceehhcc---CeEEEecCCCceEEEEecccc-------------HHHHH
Confidence 23334566677777764 579999999999999999987 45544
Q ss_pred cccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcc
Q 005506 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR 314 (693)
Q Consensus 267 ~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~ 314 (693)
. .||.. -|.++.| |.+.+++|+.||+|++||+..+..+
T Consensus 396 L-------eGHEe-LvRciRF--d~krIVSGaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 396 L-------EGHEE-LVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDP 433 (499)
T ss_pred H-------hchHH-hhhheee--cCceeeeccccceEEEEecccccCC
Confidence 4 56766 3889999 5678999999999999999996644
No 30
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.2e-25 Score=240.76 Aligned_cols=272 Identities=20% Similarity=0.262 Sum_probs=205.1
Q ss_pred CcccccchhhhcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCC
Q 005506 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS 106 (693)
Q Consensus 27 ~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~ 106 (693)
...+|.|+- +-..++..|.+|.|+|..+.|+|.+.+++||++|.+|+||++.+.+++.++ .||.+-|..+.|++.
T Consensus 30 sG~IQlWDY--RM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL-~GHlDYVRt~~FHhe-- 104 (1202)
T KOG0292|consen 30 SGVIQLWDY--RMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTL-LGHLDYVRTVFFHHE-- 104 (1202)
T ss_pred Cceeeeehh--hhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhh-ccccceeEEeeccCC--
Confidence 356677763 445568889999999999999999999999999999999999999999999 799999999999998
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCC---
Q 005506 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC--- 183 (693)
Q Consensus 107 ~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~--- 183 (693)
-..|++++.|.+|+||+..+. +++..+.+|...|.|..|+| ...+++|+|-|.+||+||+..-+..
T Consensus 105 yPWIlSASDDQTIrIWNwqsr----------~~iavltGHnHYVMcAqFhp-tEDlIVSaSLDQTVRVWDisGLRkk~~~ 173 (1202)
T KOG0292|consen 105 YPWILSASDDQTIRIWNWQSR----------KCIAVLTGHNHYVMCAQFHP-TEDLIVSASLDQTVRVWDISGLRKKNKA 173 (1202)
T ss_pred CceEEEccCCCeEEEEeccCC----------ceEEEEecCceEEEeeccCC-ccceEEEecccceEEEEeecchhccCCC
Confidence 479999999999999999965 67999999999999999999 5679999999999999998643321
Q ss_pred CCCCCCCcccceEEEeccC-CceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCC
Q 005506 184 PPAGSSHQECRNILLDLRC-GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP 262 (693)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~-~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~ 262 (693)
+............--++-. .....-....+|...|+-++|+|.- -+|++|+.|..|++|.+...+.-. . ..
T Consensus 174 pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl-pliVSG~DDRqVKlWrmnetKaWE---v----Dt 245 (1202)
T KOG0292|consen 174 PGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL-PLIVSGADDRQVKLWRMNETKAWE---V----DT 245 (1202)
T ss_pred CCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc-ceEEecCCcceeeEEEecccccee---e----hh
Confidence 1100000011110001110 0111223445788899999999984 599999999999999887543110 0 01
Q ss_pred cccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCC
Q 005506 263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN 334 (693)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~ 334 (693)
| +||.+ .|+++-|+|....+++.+.|+.|++||+........+-...+.-..++.+|..+
T Consensus 246 c-----------rgH~n-nVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lN 305 (1202)
T KOG0292|consen 246 C-----------RGHYN-NVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELN 305 (1202)
T ss_pred h-----------hcccC-CcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcc
Confidence 1 45666 699999999999999999999999999998554444433333333444555443
No 31
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.94 E-value=4.1e-24 Score=221.37 Aligned_cols=287 Identities=17% Similarity=0.259 Sum_probs=211.4
Q ss_pred cccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEec--cCCCcceEEEEEeeCCCCCEEEEEeC
Q 005506 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE--TGHSANVFCTKFVPETSDELVVSGAG 115 (693)
Q Consensus 38 ~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~--~~h~~~I~sv~f~p~~~~~~l~sgs~ 115 (693)
..++...+++.|..-|+|+.|+|||+++||++.||+|.|||=.+++.+..+. .+|.+.|++|.|+|+ ...|+|++.
T Consensus 178 PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPD--s~~~~T~Sa 255 (603)
T KOG0318|consen 178 PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPD--STQFLTVSA 255 (603)
T ss_pred CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCC--CceEEEecC
Confidence 4566677889999999999999999999999999999999999999999883 389999999999999 589999999
Q ss_pred CCcEEEEEcCCCCCCC---------------------------------CCCCCCCCceeeccCCCCeEEEEEecCCCcE
Q 005506 116 DAEVRLFNLSRFSGRG---------------------------------LDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162 (693)
Q Consensus 116 Dg~V~vwdl~~~~~~~---------------------------------~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~ 162 (693)
|.+++|||+...+... +......+...+.+|...|+++..+| ++.+
T Consensus 256 Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~-d~~~ 334 (603)
T KOG0318|consen 256 DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP-DGKT 334 (603)
T ss_pred CceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC-CCCE
Confidence 9999999998643211 01122346778899999999999999 5589
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCCCCCCCcccce-------------------EEEec-------------cCCceeeecC
Q 005506 163 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN-------------------ILLDL-------------RCGAKRSLAD 210 (693)
Q Consensus 163 l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~-------------------~l~~~-------------~~~~~~~l~~ 210 (693)
|.||+.||.|.-||..++...+..+..|..-.. ...++ ..... .+..
T Consensus 335 i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~-~lav 413 (603)
T KOG0318|consen 335 IYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPK-GLAV 413 (603)
T ss_pred EEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCce-eEEE
Confidence 999999999999999887765433222211110 00100 00000 0000
Q ss_pred CC-------------------------CCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCccc
Q 005506 211 PP-------------------------KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN 265 (693)
Q Consensus 211 ~~-------------------------~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~ 265 (693)
.. .-.....+++++|+ +..+++|+.||.|+||.+......... .+
T Consensus 414 ~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~-~~~vaVGG~Dgkvhvysl~g~~l~ee~-------~~-- 483 (603)
T KOG0318|consen 414 LSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPD-GSEVAVGGQDGKVHVYSLSGDELKEEA-------KL-- 483 (603)
T ss_pred cCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCC-CCEEEEecccceEEEEEecCCccccee-------ee--
Confidence 00 01224568999997 689999999999999999865422110 00
Q ss_pred ccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEee-cCCCceeEEeccCCCcccccCCccc
Q 005506 266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYT-VGDASKIMSFTPTLNGLELQPPIHD 344 (693)
Q Consensus 266 ~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~-~~~~~~~~~~~p~~~g~~~~~~~~~ 344 (693)
..|.. +|++|+||||+.||+++...+.|.+||+.+.+....... |...+..++|+|....++.......
T Consensus 484 ---------~~h~a-~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~ 553 (603)
T KOG0318|consen 484 ---------LEHRA-AITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTN 553 (603)
T ss_pred ---------ecccC-CceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccce
Confidence 12444 699999999999999999999999999999665333332 4556788999999887766655555
Q ss_pred cccc
Q 005506 345 FLQT 348 (693)
Q Consensus 345 ~~~~ 348 (693)
....
T Consensus 554 Viiy 557 (603)
T KOG0318|consen 554 VIIY 557 (603)
T ss_pred EEEE
Confidence 5443
No 32
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.3e-25 Score=243.50 Aligned_cols=241 Identities=20% Similarity=0.295 Sum_probs=178.9
Q ss_pred hcccceeEEec-cCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC--------------------------------C-
Q 005506 37 VRRLSQERELE-GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS--------------------------------R- 82 (693)
Q Consensus 37 i~~l~~~~~l~-gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~--------------------------------~- 82 (693)
+..+...+++. .|.+.|+++.|++||+|||||+.|+.|+||.+.. .
T Consensus 253 lsal~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~ 332 (712)
T KOG0283|consen 253 LSALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKI 332 (712)
T ss_pred ceeeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccc
Confidence 34455566677 8999999999999999999999999999998654 0
Q ss_pred ---------------------------cEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCC
Q 005506 83 ---------------------------KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDN 135 (693)
Q Consensus 83 ---------------------------~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~ 135 (693)
++++.+ .||.+.|.+|.|+.+ ++|++++.|.+||+|++...
T Consensus 333 ~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef-~GHt~DILDlSWSKn---~fLLSSSMDKTVRLWh~~~~-------- 400 (712)
T KOG0283|consen 333 SSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEF-KGHTADILDLSWSKN---NFLLSSSMDKTVRLWHPGRK-------- 400 (712)
T ss_pred cccccccccccCCccccCCCccccccccchhhh-hccchhheecccccC---CeeEeccccccEEeecCCCc--------
Confidence 111222 699999999999987 69999999999999999864
Q ss_pred CCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCC--------CCCCCCCcccceEEEeccCCceee
Q 005506 136 AITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC--------PPAGSSHQECRNILLDLRCGAKRS 207 (693)
Q Consensus 136 ~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~ 207 (693)
.+++.|. |...|+||+|+|.+.++|+||+-||.||||++...+.. .....-.+++...++..-.|....
T Consensus 401 --~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~f 477 (712)
T KOG0283|consen 401 --ECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRF 477 (712)
T ss_pred --ceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEE
Confidence 6688886 99999999999999999999999999999999876532 000111112222222222222111
Q ss_pred e-------------cCC---CCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCc
Q 005506 208 L-------------ADP---PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 271 (693)
Q Consensus 208 l-------------~~~---~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (693)
+ ... ......|+.+.|.|..+..+++.+.|..|||||.+....+..+...
T Consensus 478 Y~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~-------------- 543 (712)
T KOG0283|consen 478 YDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGF-------------- 543 (712)
T ss_pred EEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccc--------------
Confidence 1 111 1112279999999988888999999999999999876655444210
Q ss_pred cccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCC
Q 005506 272 LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (693)
Q Consensus 272 ~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~ 311 (693)
+....-....|+.||++|++++.|..||+|++...
T Consensus 544 -----~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 544 -----RNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred -----ccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 11112356889999999999999999999999873
No 33
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=1.4e-24 Score=240.42 Aligned_cols=225 Identities=25% Similarity=0.416 Sum_probs=186.1
Q ss_pred ceeEEeccC-CCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCc--EEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 005506 41 SQERELEGH-QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (693)
Q Consensus 41 ~~~~~l~gH-~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~--~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg 117 (693)
.....+.+| ...|.|+.|+++|+.|++++.|+.|++|++.+.+ .+..+ .+|...|.+++|+|+ +.++++|+.|+
T Consensus 149 ~~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l-~~h~~~v~~~~fs~d--~~~l~s~s~D~ 225 (456)
T KOG0266|consen 149 SLEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLREL-SGHTRGVSDVAFSPD--GSYLLSGSDDK 225 (456)
T ss_pred eeeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccc-cccccceeeeEECCC--CcEEEEecCCc
Confidence 346666665 7899999999999999999999999999998777 66777 799999999999999 68999999999
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEE
Q 005506 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (693)
Q Consensus 118 ~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l 197 (693)
+|+|||+... + ..++++.+|...|++++|+|.+ +++++|+.|++|++||+++++.
T Consensus 226 tiriwd~~~~-~--------~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~--------------- 280 (456)
T KOG0266|consen 226 TLRIWDLKDD-G--------RNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGEC--------------- 280 (456)
T ss_pred eEEEeeccCC-C--------eEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeE---------------
Confidence 9999999432 1 4588999999999999999966 9999999999999999998652
Q ss_pred EeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCC
Q 005506 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 277 (693)
Q Consensus 198 ~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (693)
+.....|...|++++|+++ +++|++++.|+.|++||+.++... |+..+ .++
T Consensus 281 ----------~~~l~~hs~~is~~~f~~d-~~~l~s~s~d~~i~vwd~~~~~~~-----------~~~~~-------~~~ 331 (456)
T KOG0266|consen 281 ----------VRKLKGHSDGISGLAFSPD-GNLLVSASYDGTIRVWDLETGSKL-----------CLKLL-------SGA 331 (456)
T ss_pred ----------EEeeeccCCceEEEEECCC-CCEEEEcCCCccEEEEECCCCcee-----------eeecc-------cCC
Confidence 2223356779999999997 789999999999999999987521 11111 122
Q ss_pred Ccc-ceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCC
Q 005506 278 SSL-HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGD 322 (693)
Q Consensus 278 ~~~-~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~ 322 (693)
... +++++.|+|++.+|++++.|+++++||+..+........+..
T Consensus 332 ~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~ 377 (456)
T KOG0266|consen 332 ENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSN 377 (456)
T ss_pred CCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCC
Confidence 222 699999999999999999999999999999765555544433
No 34
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.8e-25 Score=212.63 Aligned_cols=227 Identities=18% Similarity=0.306 Sum_probs=191.6
Q ss_pred CcCcccccchhhhcccceeEEeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEee
Q 005506 25 DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103 (693)
Q Consensus 25 ~~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~-~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p 103 (693)
..+..+++|+ ....-++++.++.|...|.++.|++ .+..++++|.|++|+||+....+.+.++ .+|...|...+|+|
T Consensus 80 ~GDGSLrl~d-~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf-~gh~~~Iy~a~~sp 157 (311)
T KOG0277|consen 80 SGDGSLRLFD-LTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTF-NGHNSCIYQAAFSP 157 (311)
T ss_pred ecCceEEEec-cCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEee-cCCccEEEEEecCC
Confidence 3568899998 5666679999999999999999999 5678888999999999999999999999 89999999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCC
Q 005506 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (693)
Q Consensus 104 ~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~ 183 (693)
.. +++|++++.|+++++||++.+ + + ...+..|...|.++.|+..+.++++||+.|+.|++||+|.-+.+
T Consensus 158 ~~-~nlfas~Sgd~~l~lwdvr~~-g--------k-~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p 226 (311)
T KOG0277|consen 158 HI-PNLFASASGDGTLRLWDVRSP-G--------K-FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTP 226 (311)
T ss_pred CC-CCeEEEccCCceEEEEEecCC-C--------c-eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcccc
Confidence 96 789999999999999999865 2 2 33478899999999999999999999999999999999986532
Q ss_pred CCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCc
Q 005506 184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC 263 (693)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~ 263 (693)
+....+|...|..++|||....+||+++.|-++||||..... .+
T Consensus 227 ------------------------l~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d------------s~ 270 (311)
T KOG0277|consen 227 ------------------------LFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD------------SA 270 (311)
T ss_pred ------------------------ceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch------------hh
Confidence 333457889999999999988999999999999999987432 22
Q ss_pred ccccccCccccCCCCccceEEEEEcC-CCCEEEEEecCCcEEEEEC
Q 005506 264 VNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDV 308 (693)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~V~~v~fsp-dg~~L~sgs~Dg~V~lwdl 308 (693)
+.+. ..|.. -|..+.||+ ++.++++.+-|+.++||+-
T Consensus 271 ~e~~-------~~HtE-Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 271 IETV-------DHHTE-FVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhh-------hccce-EEeccccccccCceeeecccccceeeecc
Confidence 2222 12333 588999997 5668888888999999983
No 35
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.93 E-value=2.4e-24 Score=213.46 Aligned_cols=253 Identities=17% Similarity=0.341 Sum_probs=200.9
Q ss_pred CcCcccccchhhhcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeC
Q 005506 25 DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 104 (693)
Q Consensus 25 ~~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~ 104 (693)
..+..+++|+ +.+.++..+|.||-..|..+++++-..||++++.|+.|+-||++..+.++.+ .||-..|.|++.+|.
T Consensus 170 s~DrtikIwD--latg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~Y-hGHlS~V~~L~lhPT 246 (460)
T KOG0285|consen 170 SADRTIKIWD--LATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHY-HGHLSGVYCLDLHPT 246 (460)
T ss_pred CCCceeEEEE--cccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHh-ccccceeEEEecccc
Confidence 4567888887 4566677889999999999999999999999999999999999999999998 799999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCC
Q 005506 105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP 184 (693)
Q Consensus 105 ~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~ 184 (693)
.+.|+||+.|.++||||+++. ..+..+.+|...|.++.+.|.+++++ ||+.|++|++||++.++...
T Consensus 247 --ldvl~t~grDst~RvWDiRtr----------~~V~~l~GH~~~V~~V~~~~~dpqvi-t~S~D~tvrlWDl~agkt~~ 313 (460)
T KOG0285|consen 247 --LDVLVTGGRDSTIRVWDIRTR----------ASVHVLSGHTNPVASVMCQPTDPQVI-TGSHDSTVRLWDLRAGKTMI 313 (460)
T ss_pred --ceeEEecCCcceEEEeeeccc----------ceEEEecCCCCcceeEEeecCCCceE-EecCCceEEEeeeccCceeE
Confidence 689999999999999999975 56899999999999999999887655 99999999999999987542
Q ss_pred CCCCCCcc----------------cc--eEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecC
Q 005506 185 PAGSSHQE----------------CR--NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR 246 (693)
Q Consensus 185 ~~~~~~~~----------------~~--~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r 246 (693)
....+... +. ..-|++..+. .+....+|...|.+++.+.+ .++++|+..|.+.+||.+
T Consensus 314 tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~--f~~nlsgh~~iintl~~nsD--~v~~~G~dng~~~fwdwk 389 (460)
T KOG0285|consen 314 TLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGE--FLQNLSGHNAIINTLSVNSD--GVLVSGGDNGSIMFWDWK 389 (460)
T ss_pred eeecccceeeEEecCCchhhhhccCCccceeccCCccc--hhhccccccceeeeeeeccC--ceEEEcCCceEEEEEecC
Confidence 21111110 11 1112222222 33445567888999999997 499999999999999999
Q ss_pred CCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCC
Q 005506 247 MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~ 310 (693)
++...+..+.... |+.+. ....|...+|...|..|++|..|.+|.+|.-..
T Consensus 390 sg~nyQ~~~t~vq---------pGSl~----sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 390 SGHNYQRGQTIVQ---------PGSLE----SEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred cCccccccccccc---------CCccc----cccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 8865543322211 22221 122599999999999999999999999997655
No 36
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.9e-24 Score=227.48 Aligned_cols=249 Identities=16% Similarity=0.217 Sum_probs=206.3
Q ss_pred cCcccccchhhhcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCC
Q 005506 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105 (693)
Q Consensus 26 ~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~ 105 (693)
+...+++|....+ ..++.++-..-+|.+..|-.--+++++|++|..|+||++.++..++.+ ..|.+-|.|++.+|.
T Consensus 33 ynG~V~IWnyetq--tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~F-eAH~DyIR~iavHPt- 108 (794)
T KOG0276|consen 33 YNGDVQIWNYETQ--TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTF-EAHSDYIRSIAVHPT- 108 (794)
T ss_pred ecCeeEEEecccc--eeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEe-eccccceeeeeecCC-
Confidence 5578888875444 357777777889999999999999999999999999999999999999 799999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCC
Q 005506 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP 185 (693)
Q Consensus 106 ~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~ 185 (693)
..+++|++.|-+|++||.... +.+.+++.+|+..|.+++|+|.+++.|+|++-|++|++|.+.++.+.
T Consensus 109 -~P~vLtsSDDm~iKlW~we~~---------wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~n-- 176 (794)
T KOG0276|consen 109 -LPYVLTSSDDMTIKLWDWENE---------WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPN-- 176 (794)
T ss_pred -CCeEEecCCccEEEEeeccCc---------eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCc--
Confidence 589999999999999999853 47789999999999999999999999999999999999999876522
Q ss_pred CCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCC-CcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcc
Q 005506 186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV 264 (693)
Q Consensus 186 ~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~-~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~ 264 (693)
....+|...|+|+.+-|-+ .-+|++|+.|..|+|||..+. .|+
T Consensus 177 -----------------------fTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-------------~CV 220 (794)
T KOG0276|consen 177 -----------------------FTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-------------SCV 220 (794)
T ss_pred -----------------------eeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH-------------HHH
Confidence 2333677889999998732 239999999999999999875 577
Q ss_pred cccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCC
Q 005506 265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN 334 (693)
Q Consensus 265 ~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~ 334 (693)
++. .||.. .|..+.|+|.-..+++|+.||+|+||+-.+-+....+.-..+.+..++..+..+
T Consensus 221 ~TL-------eGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~ 282 (794)
T KOG0276|consen 221 QTL-------EGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDG 282 (794)
T ss_pred HHh-------hcccc-cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCC
Confidence 776 66766 599999999999999999999999999888554443333333333333334333
No 37
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.92 E-value=1.3e-23 Score=225.60 Aligned_cols=249 Identities=19% Similarity=0.320 Sum_probs=205.6
Q ss_pred hcccceeEEeccCCCcEEEEEECCCCCEEEEEeCC-CcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeC
Q 005506 37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDD-THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG 115 (693)
Q Consensus 37 i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~D-g~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~ 115 (693)
+..+.+++.|.--..+|..+.|+..|.+||.|+.. |.+.||++.+...+... ++|...|++++++|+ |+++|||+.
T Consensus 294 lP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQ-QgH~~~i~~l~YSpD--gq~iaTG~e 370 (893)
T KOG0291|consen 294 LPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQ-QGHSDRITSLAYSPD--GQLIATGAE 370 (893)
T ss_pred cCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeec-cccccceeeEEECCC--CcEEEeccC
Confidence 45667788887777899999999999999998764 79999999988888777 799999999999999 799999999
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccce
Q 005506 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (693)
Q Consensus 116 Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~ 195 (693)
||.|+|||...+ -+..+|..|+..|+.+.|+. .++.+++++-||+||.||+.......
T Consensus 371 DgKVKvWn~~Sg----------fC~vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNfR----------- 428 (893)
T KOG0291|consen 371 DGKVKVWNTQSG----------FCFVTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFR----------- 428 (893)
T ss_pred CCcEEEEeccCc----------eEEEEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccceee-----------
Confidence 999999999964 57899999999999999998 77889999999999999997654220
Q ss_pred EEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCc-EEEEecCCCCCCcccccCCCCCCcccccccCcccc
Q 005506 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF-ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 274 (693)
Q Consensus 196 ~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~-IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (693)
.+. . .......|++..|. |.++.+|+.|.. |.+|++.+++.+..+
T Consensus 429 -----------Tft-~-P~p~QfscvavD~s-GelV~AG~~d~F~IfvWS~qTGqllDiL-------------------- 474 (893)
T KOG0291|consen 429 -----------TFT-S-PEPIQFSCVAVDPS-GELVCAGAQDSFEIFVWSVQTGQLLDIL-------------------- 474 (893)
T ss_pred -----------eec-C-CCceeeeEEEEcCC-CCEEEeeccceEEEEEEEeecCeeeehh--------------------
Confidence 010 1 11346789999997 688888888754 899999998755432
Q ss_pred CCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCcccccCCcccc
Q 005506 275 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDF 345 (693)
Q Consensus 275 ~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~ 345 (693)
.||.+ +|.+++|+|.|..|++++.|.+|++||+-......-.+...+....++|+|+...++..+..++.
T Consensus 475 sGHEg-PVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqI 544 (893)
T KOG0291|consen 475 SGHEG-PVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQI 544 (893)
T ss_pred cCCCC-cceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceE
Confidence 56776 79999999999999999999999999999864444444555667788999998888777766544
No 38
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=3.8e-23 Score=229.70 Aligned_cols=251 Identities=15% Similarity=0.225 Sum_probs=172.4
Q ss_pred CcccccchhhhcccceeEEeccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEECCCCc--------EEEEeccCCCcceE
Q 005506 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRK--------LLHSIETGHSANVF 97 (693)
Q Consensus 27 ~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~-g~~LaSgs~Dg~I~IWd~~~~~--------~~~~l~~~h~~~I~ 97 (693)
...+++|+.. +..++..|.+|.+.|++++|+|+ +.+||||+.|++|+|||+.++. ++..+ .+|...|.
T Consensus 53 ~gvI~L~~~~--r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L-~gH~~~V~ 129 (568)
T PTZ00420 53 IGAIRLENQM--RKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCIL-KGHKKKIS 129 (568)
T ss_pred eeEEEeeecC--CCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEe-ecCCCcEE
Confidence 3445555432 33567889999999999999996 7899999999999999997542 23345 68999999
Q ss_pred EEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 005506 98 CTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDF 177 (693)
Q Consensus 98 sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDl 177 (693)
+++|+|+. ..+|++|+.|++|+|||++.. ..+..+. |...|.+++|+| ++.+|++++.|+.|++||+
T Consensus 130 sVaf~P~g-~~iLaSgS~DgtIrIWDl~tg----------~~~~~i~-~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~ 196 (568)
T PTZ00420 130 IIDWNPMN-YYIMCSSGFDSFVNIWDIENE----------KRAFQIN-MPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDP 196 (568)
T ss_pred EEEECCCC-CeEEEEEeCCCeEEEEECCCC----------cEEEEEe-cCCcEEEEEECC-CCCEEEEEecCCEEEEEEC
Confidence 99999984 346789999999999999864 2234444 567899999999 6789999999999999999
Q ss_pred CCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCC----cEEEEecCCC-CCCc
Q 005506 178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA----FARLYDRRML-PPLT 252 (693)
Q Consensus 178 r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg----~IriwD~r~~-~~~~ 252 (693)
+++.... .+ ....+. .....+....|+++ +.+|++++.|+ .|+|||++.. .++.
T Consensus 197 Rsg~~i~-----------tl-~gH~g~--------~~s~~v~~~~fs~d-~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~ 255 (568)
T PTZ00420 197 RKQEIAS-----------SF-HIHDGG--------KNTKNIWIDGLGGD-DNYILSTGFSKNNMREMKLWDLKNTTSALV 255 (568)
T ss_pred CCCcEEE-----------EE-ecccCC--------ceeEEEEeeeEcCC-CCEEEEEEcCCCCccEEEEEECCCCCCceE
Confidence 9875320 00 000000 00112233456676 56788777664 7999999963 2221
Q ss_pred ccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceE-EeecCCCceeEEecc
Q 005506 253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM-RYTVGDASKIMSFTP 331 (693)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~-~~~~~~~~~~~~~~p 331 (693)
.... ..+.+ .+......++|.++++|++|+.|++|++..+....+ .+....+...++|.|
T Consensus 256 ~~~l------------------d~~~~-~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~P 316 (568)
T PTZ00420 256 TMSI------------------DNASA-PLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLP 316 (568)
T ss_pred EEEe------------------cCCcc-ceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEcc
Confidence 1100 11111 234444566789999999999999999987532211 233445566777777
Q ss_pred CC
Q 005506 332 TL 333 (693)
Q Consensus 332 ~~ 333 (693)
..
T Consensus 317 kr 318 (568)
T PTZ00420 317 KQ 318 (568)
T ss_pred cc
Confidence 53
No 39
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.7e-24 Score=206.10 Aligned_cols=227 Identities=19% Similarity=0.294 Sum_probs=180.5
Q ss_pred CCCcEEEEEECCC-CCEEEEEeCCCcEEEEECCCC-cEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCC
Q 005506 49 HQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 126 (693)
Q Consensus 49 H~~~V~~l~~s~~-g~~LaSgs~Dg~I~IWd~~~~-~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~ 126 (693)
-.+++..++|+++ .+.+++++.||.++|||+... +++..+ +.|...|.++.|++.. ...+++++-|++|++|+...
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~-kEH~~EV~Svdwn~~~-r~~~ltsSWD~TiKLW~~~r 136 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKF-KEHKREVYSVDWNTVR-RRIFLTSSWDGTIKLWDPNR 136 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHH-HhhhhheEEecccccc-ceeEEeeccCCceEeecCCC
Confidence 3678999999995 568999999999999996533 467777 7899999999999985 67888899999999999987
Q ss_pred CCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCcee
Q 005506 127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206 (693)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 206 (693)
+ ..+.++.+|...|...+|+|..+++|++++.||++++||+|...+.
T Consensus 137 ~----------~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~----------------------- 183 (311)
T KOG0277|consen 137 P----------NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKF----------------------- 183 (311)
T ss_pred C----------cceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCce-----------------------
Confidence 5 5588999999999999999999999999999999999999875421
Q ss_pred eecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEE
Q 005506 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT 286 (693)
Q Consensus 207 ~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~ 286 (693)
+. .+.|...|.|+.|+..+.++|+||+.|+.||+||+|+.+.. +..+ .+|. ..|..|+
T Consensus 184 -~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p------------l~eL-------~gh~-~AVRkvk 241 (311)
T KOG0277|consen 184 -MS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTP------------LFEL-------NGHG-LAVRKVK 241 (311)
T ss_pred -eE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhcccc------------ceee-------cCCc-eEEEEEe
Confidence 11 33566789999999988999999999999999999986411 1111 2343 3799999
Q ss_pred EcCCC-CEEEEEecCCcEEEEECCCCCcce-EEeecCCCceeEEeccC
Q 005506 287 FSPNG-EEVLLSYSGEHVYLMDVNHAGGRA-MRYTVGDASKIMSFTPT 332 (693)
Q Consensus 287 fspdg-~~L~sgs~Dg~V~lwdl~~~~~~~-~~~~~~~~~~~~~~~p~ 332 (693)
|||.. ..|++++.|-+++|||...+.... ....+.+-...+.|++.
T Consensus 242 ~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~ 289 (311)
T KOG0277|consen 242 FSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLF 289 (311)
T ss_pred cCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccc
Confidence 99975 567788889999999998643222 22233333444556654
No 40
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.92 E-value=3.6e-24 Score=208.56 Aligned_cols=219 Identities=21% Similarity=0.326 Sum_probs=179.3
Q ss_pred EEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC------------------CcEEEEeccCCCcceEEEEEeeCC
Q 005506 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS------------------RKLLHSIETGHSANVFCTKFVPET 105 (693)
Q Consensus 44 ~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~------------------~~~~~~l~~~h~~~I~sv~f~p~~ 105 (693)
..+..|.+++.+.+|++||.++||||.|..|+|.|++. .-.++++ ..|..+|.++.|+|.
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTl-YDH~devn~l~FHPr- 183 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTL-YDHVDEVNDLDFHPR- 183 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeeh-hhccCcccceeecch-
Confidence 45678999999999999999999999999999999872 1256667 689999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCC
Q 005506 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP 185 (693)
Q Consensus 106 ~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~ 185 (693)
..+|++|+.|++|++||+...+.+ +..+.++ ...+|.+|.|+| .+.+|+.|....++++||+.+.+...
T Consensus 184 -e~ILiS~srD~tvKlFDfsK~saK-------rA~K~~q-d~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~Qcfv- 252 (430)
T KOG0640|consen 184 -ETILISGSRDNTVKLFDFSKTSAK-------RAFKVFQ-DTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFV- 252 (430)
T ss_pred -hheEEeccCCCeEEEEecccHHHH-------HHHHHhh-ccceeeeEeecC-CCceEEEecCCCceeEEeccceeEee-
Confidence 699999999999999999864321 1223333 467899999999 77888899999999999999865321
Q ss_pred CCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCccc
Q 005506 186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN 265 (693)
Q Consensus 186 ~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~ 265 (693)
.......|...|+++.+++. +++.++|+.||.|+|||--+. .|+.
T Consensus 253 ---------------------sanPd~qht~ai~~V~Ys~t-~~lYvTaSkDG~IklwDGVS~-------------rCv~ 297 (430)
T KOG0640|consen 253 ---------------------SANPDDQHTGAITQVRYSST-GSLYVTASKDGAIKLWDGVSN-------------RCVR 297 (430)
T ss_pred ---------------------ecCcccccccceeEEEecCC-ccEEEEeccCCcEEeeccccH-------------HHHH
Confidence 01112357789999999997 789999999999999997654 6777
Q ss_pred ccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceE
Q 005506 266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM 316 (693)
Q Consensus 266 ~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~ 316 (693)
+|... |.+..|.+..|..+|+||++++.|..|+||.+.++.....
T Consensus 298 t~~~A------H~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~ 342 (430)
T KOG0640|consen 298 TIGNA------HGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKE 342 (430)
T ss_pred HHHhh------cCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEE
Confidence 77544 4455799999999999999999999999999999654333
No 41
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.92 E-value=4.1e-23 Score=211.27 Aligned_cols=229 Identities=25% Similarity=0.390 Sum_probs=184.3
Q ss_pred eEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 005506 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (693)
Q Consensus 43 ~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vw 122 (693)
.++|++|.++|++++|+|++++|++++.||.|++|++.+++....+ ..|...+..+.|+|+ +++|++++.|+.|++|
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~-~~~~~~i~~~~~~~~--~~~l~~~~~~~~i~i~ 78 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTL-KGHTGPVRDVAASAD--GTYLASGSSDKTIRLW 78 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEE-ecCCcceeEEEECCC--CCEEEEEcCCCeEEEE
Confidence 3567899999999999999999999999999999999988877777 689999999999998 5899999999999999
Q ss_pred EcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccC
Q 005506 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (693)
Q Consensus 123 dl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~ 202 (693)
++... .....+..|...|.++.|+| ++.++++++.||.|++||+++.+..
T Consensus 79 ~~~~~----------~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~------------------- 128 (289)
T cd00200 79 DLETG----------ECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCL------------------- 128 (289)
T ss_pred EcCcc----------cceEEEeccCCcEEEEEEcC-CCCEEEEecCCCeEEEEECCCcEEE-------------------
Confidence 99854 34667778989999999999 4678888888999999999854311
Q ss_pred CceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccce
Q 005506 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL 282 (693)
Q Consensus 203 ~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 282 (693)
.....+...+.++.|+|+ +.++++++.|+.|++||++..+....+ ..|.. .|
T Consensus 129 ------~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~d~~~~~~~~~~--------------------~~~~~-~i 180 (289)
T cd00200 129 ------TTLRGHTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLRTGKCVATL--------------------TGHTG-EV 180 (289)
T ss_pred ------EEeccCCCcEEEEEEcCc-CCEEEEEcCCCcEEEEEccccccceeE--------------------ecCcc-cc
Confidence 111134567999999997 678888888999999999865433222 11222 58
Q ss_pred EEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccC
Q 005506 283 THVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT 332 (693)
Q Consensus 283 ~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~ 332 (693)
+++.|+|+++.|++++.++.|++||+.++........+...+..+.|+|.
T Consensus 181 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 230 (289)
T cd00200 181 NSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPD 230 (289)
T ss_pred ceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCC
Confidence 99999999999999999999999999985543333244456666777775
No 42
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.2e-22 Score=199.88 Aligned_cols=264 Identities=19% Similarity=0.235 Sum_probs=202.6
Q ss_pred cccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeC--
Q 005506 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-- 115 (693)
Q Consensus 38 ~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~-- 115 (693)
+++++.+.|+.-.+.|++|.|+++|.+|++++.|-.++|||..++++++++ ..+.-.|-.++|.... ..++.++.
T Consensus 2 ~s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti-~skkyG~~~~~Fth~~--~~~i~sStk~ 78 (311)
T KOG1446|consen 2 RSFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTI-NSKKYGVDLACFTHHS--NTVIHSSTKE 78 (311)
T ss_pred cccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEe-ecccccccEEEEecCC--ceEEEccCCC
Confidence 456777888888899999999999999999999999999999999999999 5677789999998773 56666665
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCC-------CCC
Q 005506 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP-------AGS 188 (693)
Q Consensus 116 Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~-------~~~ 188 (693)
|.+||.-++..+ +.++.+.+|...|.+|+.+| .+..|+|++.|++|++||+|..+.... +..
T Consensus 79 d~tIryLsl~dN----------kylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~A 147 (311)
T KOG1446|consen 79 DDTIRYLSLHDN----------KYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAA 147 (311)
T ss_pred CCceEEEEeecC----------ceEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCCccee
Confidence 889999999875 56999999999999999999 558899999999999999996653311 100
Q ss_pred CC----------cccceEEEeccCCceeeecC---CCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccc
Q 005506 189 SH----------QECRNILLDLRCGAKRSLAD---PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ 255 (693)
Q Consensus 189 ~~----------~~~~~~l~~~~~~~~~~l~~---~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~ 255 (693)
-. ......++|++.-...+... ........+.+.|+|+ |++|+.+...+.+++.|.-++....++.
T Consensus 148 fDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~d-GK~iLlsT~~s~~~~lDAf~G~~~~tfs 226 (311)
T KOG1446|consen 148 FDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPD-GKSILLSTNASFIYLLDAFDGTVKSTFS 226 (311)
T ss_pred ECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCC-CCEEEEEeCCCcEEEEEccCCcEeeeEe
Confidence 00 11145567776543322222 2234667899999997 7999999999999999998887554443
Q ss_pred cCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEee-cCCCceeEEeccCCC
Q 005506 256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYT-VGDASKIMSFTPTLN 334 (693)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~-~~~~~~~~~~~p~~~ 334 (693)
.... ... --...+|+||++++++|+.||+|++|++.++........ ...+...+.|+|-..
T Consensus 227 ~~~~-----------------~~~-~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~ 288 (311)
T KOG1446|consen 227 GYPN-----------------AGN-LPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYA 288 (311)
T ss_pred eccC-----------------CCC-cceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCcee
Confidence 2111 011 125789999999999999999999999999887666665 355666666777543
No 43
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=1.9e-23 Score=199.68 Aligned_cols=263 Identities=17% Similarity=0.274 Sum_probs=203.7
Q ss_pred EEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEe-ccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 005506 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI-ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (693)
Q Consensus 44 ~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l-~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vw 122 (693)
.++++|...|.+++|+.+|..||+|+.|+++.||+++..+....+ ..+|.+.|-.++|.|.+ ..+|++++.|.+|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~-~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKH-PDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCC-CcceEEecCCceEEEE
Confidence 668899999999999999999999999999999999987655433 25899999999999987 6899999999999999
Q ss_pred EcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCc------ccceE
Q 005506 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ------ECRNI 196 (693)
Q Consensus 123 dl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~------~~~~~ 196 (693)
|++.. +++..... ...-.-+.|+| .+.+++.++.|..|.+.|.|+.+.......... ...+-
T Consensus 93 d~r~~----------k~~~~i~~-~~eni~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd 160 (313)
T KOG1407|consen 93 DIRSG----------KCTARIET-KGENINITWSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSND 160 (313)
T ss_pred EeccC----------cEEEEeec-cCcceEEEEcC-CCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCC
Confidence 99965 45555543 33445578999 668888999999999999998765421110000 00111
Q ss_pred EEeccCC----------ceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccc
Q 005506 197 LLDLRCG----------AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266 (693)
Q Consensus 197 l~~~~~~----------~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~ 266 (693)
++-+.+| ..+++.....|.....||.|+|+ |++||+|+.|..+.+||+..+ .|++.
T Consensus 161 ~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~-GryfA~GsADAlvSLWD~~EL-------------iC~R~ 226 (313)
T KOG1407|consen 161 LFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPD-GRYFATGSADALVSLWDVDEL-------------ICERC 226 (313)
T ss_pred EEEEecCCceEEEEeccccccccccccCCcceEEEEECCC-CceEeeccccceeeccChhHh-------------hhhee
Confidence 2222332 22344555678888999999997 799999999999999999865 46655
Q ss_pred cccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCcccccCCc
Q 005506 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPI 342 (693)
Q Consensus 267 ~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~ 342 (693)
|.. -..+|..|.||.+|++|++++.|..|-|=++.+|. ......+..+...++|+|...-+++....
T Consensus 227 isR--------ldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd-~~~eI~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 227 ISR--------LDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGD-RVWEIPCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ecc--------ccCceEEEEeccCcceeeccCccceEEeEecccCC-eEEEeeccCCceeEEecCCCceeeEEecC
Confidence 522 23379999999999999999999999999999975 44555667778889999998888776543
No 44
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.92 E-value=4.8e-24 Score=219.29 Aligned_cols=247 Identities=15% Similarity=0.193 Sum_probs=188.8
Q ss_pred CCcCcccccchhhhcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEee
Q 005506 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103 (693)
Q Consensus 24 ~~~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p 103 (693)
...+..+.+|...- ..++++++.||..+|.+++|+++|..++|+|.|+.|++||+++|+++..+.. ...++|++|+|
T Consensus 233 ~gmD~~vklW~vy~-~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~--~~~~~cvkf~p 309 (503)
T KOG0282|consen 233 GGMDGLVKLWNVYD-DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL--DKVPTCVKFHP 309 (503)
T ss_pred cCCCceEEEEEEec-CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec--CCCceeeecCC
Confidence 45667788886544 7889999999999999999999999999999999999999999999999943 34689999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCC
Q 005506 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (693)
Q Consensus 104 ~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~ 183 (693)
+. .++|++|+.|+.|+.||++.+ +.++.+..|-+.|..|.|-+ ++..|+++++|++|++|+.+.+-..
T Consensus 310 d~-~n~fl~G~sd~ki~~wDiRs~----------kvvqeYd~hLg~i~~i~F~~-~g~rFissSDdks~riWe~~~~v~i 377 (503)
T KOG0282|consen 310 DN-QNIFLVGGSDKKIRQWDIRSG----------KVVQEYDRHLGAILDITFVD-EGRRFISSSDDKSVRIWENRIPVPI 377 (503)
T ss_pred CC-CcEEEEecCCCcEEEEeccch----------HHHHHHHhhhhheeeeEEcc-CCceEeeeccCccEEEEEcCCCccc
Confidence 95 589999999999999999975 66888999999999999999 7788999999999999999876533
Q ss_pred CCCC----------CCCccc----------ceEEEeccCCc-eeeecCCCCCc--cceEEEEEcCCCCcEEEEEeCCCcE
Q 005506 184 PPAG----------SSHQEC----------RNILLDLRCGA-KRSLADPPKQT--LSLKSCDISSTRPHLLLVGGSDAFA 240 (693)
Q Consensus 184 ~~~~----------~~~~~~----------~~~l~~~~~~~-~~~l~~~~~~~--~~v~sl~~sp~~~~~Latgs~Dg~I 240 (693)
..+. ..+... ...++.....- ...-....+|. ..-..+.|||+ +.+|++|+.||.+
T Consensus 378 k~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD-G~~l~SGdsdG~v 456 (503)
T KOG0282|consen 378 KNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD-GRTLCSGDSDGKV 456 (503)
T ss_pred hhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCC-CCeEEeecCCccE
Confidence 1111 001000 01111110000 00001112222 23456899998 7899999999999
Q ss_pred EEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCC-CEEEEEecCCcEEEEE
Q 005506 241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG-EEVLLSYSGEHVYLMD 307 (693)
Q Consensus 241 riwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg-~~L~sgs~Dg~V~lwd 307 (693)
.+||.++.+.+..+ ..|.. +++.+.|+|.. ..|++++-||.|++||
T Consensus 457 ~~wdwkt~kl~~~l--------------------kah~~-~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 457 NFWDWKTTKLVSKL--------------------KAHDQ-PCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEeechhhhhhhcc--------------------ccCCc-ceEEEEecCCCcceeEecccCceeEecC
Confidence 99999987655433 23433 79999999965 4788888899999996
No 45
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.91 E-value=4.3e-23 Score=205.65 Aligned_cols=263 Identities=14% Similarity=0.173 Sum_probs=202.5
Q ss_pred hcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCC
Q 005506 37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD 116 (693)
Q Consensus 37 i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~D 116 (693)
+.......++.||.+.|+|+.|+.+|.+||||..+|.|+||...++.....+. .-...|.=++|+|. +.+|+.|+.|
T Consensus 93 ~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~-~e~~dieWl~WHp~--a~illAG~~D 169 (399)
T KOG0296|consen 93 ISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD-QEVEDIEWLKWHPR--AHILLAGSTD 169 (399)
T ss_pred ccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee-cccCceEEEEeccc--ccEEEeecCC
Confidence 44555788999999999999999999999999999999999999998888883 45567888999997 6999999999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCC---------
Q 005506 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG--------- 187 (693)
Q Consensus 117 g~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~--------- 187 (693)
|.|.+|.+... ...+.+.+|..++++=.|.| +++.++++..||+|++|+..++++.....
T Consensus 170 GsvWmw~ip~~----------~~~kv~~Gh~~~ct~G~f~p-dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~ 238 (399)
T KOG0296|consen 170 GSVWMWQIPSQ----------ALCKVMSGHNSPCTCGEFIP-DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPC 238 (399)
T ss_pred CcEEEEECCCc----------ceeeEecCCCCCcccccccC-CCceEEEEecCceEEEEecCCCceeEEecccccCcCCc
Confidence 99999999864 34788999999999999999 57888899999999999999987542221
Q ss_pred -----------CCCcccceEEEeccCCceeeecCC------CCCccceEEEEEcCCC--CcEEEEEeCCCcEEEEecCCC
Q 005506 188 -----------SSHQECRNILLDLRCGAKRSLADP------PKQTLSLKSCDISSTR--PHLLLVGGSDAFARLYDRRML 248 (693)
Q Consensus 188 -----------~~~~~~~~~l~~~~~~~~~~l~~~------~~~~~~v~sl~~sp~~--~~~Latgs~Dg~IriwD~r~~ 248 (693)
.+..++...+....+++....... +.+...+.|+.+.|.. =.++|+|+.||+|.|||+...
T Consensus 239 ~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~ 318 (399)
T KOG0296|consen 239 ISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS 318 (399)
T ss_pred cccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc
Confidence 122233333444444443332221 1233334444444432 247899999999999999876
Q ss_pred CCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEE
Q 005506 249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMS 328 (693)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~ 328 (693)
++...+. |.. +|+.+.|-+ ..+|++++.+|.|+.||.+++...-....|...+-.++
T Consensus 319 ~~R~~c~---------------------he~-~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ 375 (399)
T KOG0296|consen 319 TLRHICE---------------------HED-GVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFA 375 (399)
T ss_pred hhheecc---------------------CCC-ceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEE
Confidence 5433221 333 599999999 88999999999999999999887777777777888888
Q ss_pred eccCCCcc
Q 005506 329 FTPTLNGL 336 (693)
Q Consensus 329 ~~p~~~g~ 336 (693)
++|..+.+
T Consensus 376 ls~~~~~v 383 (399)
T KOG0296|consen 376 LSPQKRLV 383 (399)
T ss_pred EcCCCcEE
Confidence 88865443
No 46
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=5e-23 Score=197.85 Aligned_cols=229 Identities=17% Similarity=0.271 Sum_probs=185.6
Q ss_pred CCcCcccccchhhhcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC---cEEEEeccCCCcceEEEE
Q 005506 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR---KLLHSIETGHSANVFCTK 100 (693)
Q Consensus 24 ~~~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~---~~~~~l~~~h~~~I~sv~ 100 (693)
..|+.++.+|...-..++++.+|+||...|.|++|+++|.+|||++.|+.|-||.+... .+...+ ++|+..|.-+.
T Consensus 79 aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL-~~HtqDVK~V~ 157 (312)
T KOG0645|consen 79 ASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVL-QEHTQDVKHVI 157 (312)
T ss_pred eeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeee-ccccccccEEE
Confidence 45778888898888999999999999999999999999999999999999999998744 466666 89999999999
Q ss_pred EeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 005506 101 FVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180 (693)
Q Consensus 101 f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~ 180 (693)
|+|. ..+|++++.|.+|++|+-... ..+.++.++.+|...|.+++|+| .+..|++++.|++|+||-..+.
T Consensus 158 WHPt--~dlL~S~SYDnTIk~~~~~~d-------ddW~c~~tl~g~~~TVW~~~F~~-~G~rl~s~sdD~tv~Iw~~~~~ 227 (312)
T KOG0645|consen 158 WHPT--EDLLFSCSYDNTIKVYRDEDD-------DDWECVQTLDGHENTVWSLAFDN-IGSRLVSCSDDGTVSIWRLYTD 227 (312)
T ss_pred EcCC--cceeEEeccCCeEEEEeecCC-------CCeeEEEEecCccceEEEEEecC-CCceEEEecCCcceEeeeeccC
Confidence 9998 589999999999999987731 23577999999999999999999 6688999999999999986642
Q ss_pred CCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCC
Q 005506 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP 260 (693)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~ 260 (693)
-+ ..|...++.++|. + ..|++++.|+.|++|..........
T Consensus 228 ~~-----------------------------~~~sr~~Y~v~W~-~--~~IaS~ggD~~i~lf~~s~~~d~p~------- 268 (312)
T KOG0645|consen 228 LS-----------------------------GMHSRALYDVPWD-N--GVIASGGGDDAIRLFKESDSPDEPS------- 268 (312)
T ss_pred cc-----------------------------hhcccceEeeeec-c--cceEeccCCCEEEEEEecCCCCCch-------
Confidence 11 1244578889998 3 4899999999999998764211111
Q ss_pred CCcccccccCccccCCCCccceEEEEEcCC-CCEEEEEecCCcEEEEECC
Q 005506 261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPN-GEEVLLSYSGEHVYLMDVN 309 (693)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~V~~v~fspd-g~~L~sgs~Dg~V~lwdl~ 309 (693)
...+ ....+.|.. .|++|.|+|. ...|++|+.||.|++|.+.
T Consensus 269 ---~~l~---~~~~~aHe~-dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 269 ---WNLL---AKKEGAHEV-DVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ---HHHH---Hhhhccccc-ccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 1111 001133444 6999999995 6789999999999999874
No 47
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.91 E-value=4e-23 Score=211.64 Aligned_cols=236 Identities=17% Similarity=0.224 Sum_probs=192.3
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCC
Q 005506 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (693)
Q Consensus 50 ~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~ 129 (693)
+..|++|+|+.+|++||+|+.||.++||+. ++..+.++ ..|.++|++++|+.. |.+|++++.|+++.+||...+
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl-~~HkgPI~slKWnk~--G~yilS~~vD~ttilwd~~~g-- 308 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTL-GQHKGPIFSLKWNKK--GTYILSGGVDGTTILWDAHTG-- 308 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEec-Cchhhhhh-hccCCceEEEEEcCC--CCEEEeccCCccEEEEeccCc--
Confidence 367999999999999999999999999997 46777788 789999999999988 799999999999999999865
Q ss_pred CCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeec
Q 005506 130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA 209 (693)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~ 209 (693)
...+.+.-|+.+-..|.|- +..-|++++.||.|+++.+....+. .
T Consensus 309 --------~~~q~f~~~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~~P~-------------------------~ 353 (524)
T KOG0273|consen 309 --------TVKQQFEFHSAPALDVDWQ--SNDEFATSSTDGCIHVCKVGEDRPV-------------------------K 353 (524)
T ss_pred --------eEEEeeeeccCCccceEEe--cCceEeecCCCceEEEEEecCCCcc-------------------------e
Confidence 4466677788877778886 4568999999999999998765532 2
Q ss_pred CCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcC
Q 005506 210 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP 289 (693)
Q Consensus 210 ~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fsp 289 (693)
...+|..+|.++.|+|. +.+|++++.|++++||.+.... |...+ +.|.. .|..+.|+|
T Consensus 354 t~~GH~g~V~alk~n~t-g~LLaS~SdD~TlkiWs~~~~~-------------~~~~l-------~~Hsk-ei~t~~wsp 411 (524)
T KOG0273|consen 354 TFIGHHGEVNALKWNPT-GSLLASCSDDGTLKIWSMGQSN-------------SVHDL-------QAHSK-EIYTIKWSP 411 (524)
T ss_pred eeecccCceEEEEECCC-CceEEEecCCCeeEeeecCCCc-------------chhhh-------hhhcc-ceeeEeecC
Confidence 23357889999999997 7899999999999999977542 22222 34544 588999998
Q ss_pred CC---------CEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCcccccCCccccccc
Q 005506 290 NG---------EEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQT 348 (693)
Q Consensus 290 dg---------~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~ 348 (693)
+| ..|++++.|++|++||+..+.+...+..+..++-.++|+|+..-++.....+..-+.
T Consensus 412 ~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iw 479 (524)
T KOG0273|consen 412 TGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIW 479 (524)
T ss_pred CCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEec
Confidence 64 578999999999999999987767776888899999999987766555444444433
No 48
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.1e-23 Score=221.76 Aligned_cols=237 Identities=14% Similarity=0.286 Sum_probs=204.1
Q ss_pred ceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 005506 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (693)
Q Consensus 41 ~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~ 120 (693)
...++|..|+..|.++.++|....++++-.+|.|.|||.++...++.+ .-..-+|.+.+|.+. -+.+++|+.|..||
T Consensus 4 ~~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksf-eV~~~PvRa~kfiaR--knWiv~GsDD~~Ir 80 (794)
T KOG0276|consen 4 DFKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSF-EVSEVPVRAAKFIAR--KNWIVTGSDDMQIR 80 (794)
T ss_pred hhhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeee-eecccchhhheeeec--cceEEEecCCceEE
Confidence 334456679999999999999999999999999999999999999999 566789999999998 48999999999999
Q ss_pred EEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEec
Q 005506 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (693)
Q Consensus 121 vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~ 200 (693)
||+.++. +.++.|.+|.+.|++|+.||+.| +++|+|.|-+|++||....-.|
T Consensus 81 Vfnynt~----------ekV~~FeAH~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~~wa~----------------- 132 (794)
T KOG0276|consen 81 VFNYNTG----------EKVKTFEAHSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWENEWAC----------------- 132 (794)
T ss_pred EEecccc----------eeeEEeeccccceeeeeecCCCC-eEEecCCccEEEEeeccCceee-----------------
Confidence 9999975 67999999999999999999776 4559999999999999875433
Q ss_pred cCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCcc
Q 005506 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 280 (693)
Q Consensus 201 ~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (693)
.....+|...|.+++|+|.+++.+|+++.|++|++|.+.+..+..++ .+|..
T Consensus 133 -------~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl--------------------~gHek- 184 (794)
T KOG0276|consen 133 -------EQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTL--------------------EGHEK- 184 (794)
T ss_pred -------eeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceee--------------------ecccc-
Confidence 22344678889999999999999999999999999999875443322 45655
Q ss_pred ceEEEEEcCCC--CEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCcc
Q 005506 281 HLTHVTFSPNG--EEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGL 336 (693)
Q Consensus 281 ~V~~v~fspdg--~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~g~ 336 (693)
.|++|.|-+-| .+|++|+.|.+|++||.++..+...+..|.+.+..++|+|..+-+
T Consensus 185 GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpii 242 (794)
T KOG0276|consen 185 GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPII 242 (794)
T ss_pred CcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEE
Confidence 59999998755 799999999999999999988888888888889999999986554
No 49
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.91 E-value=4.2e-22 Score=203.81 Aligned_cols=245 Identities=22% Similarity=0.338 Sum_probs=193.7
Q ss_pred CcccccchhhhcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCC
Q 005506 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS 106 (693)
Q Consensus 27 ~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~ 106 (693)
+..+.+|+. ...+....+.+|...|.++.|++++++|++++.|+.|++|++.+++.+..+ ..|...|.++.|+|+
T Consensus 30 ~g~i~i~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~-~~~~~~i~~~~~~~~-- 104 (289)
T cd00200 30 DGTIKVWDL--ETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTL-TGHTSYVSSVAFSPD-- 104 (289)
T ss_pred CcEEEEEEe--eCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEE-eccCCcEEEEEEcCC--
Confidence 456666653 334467788999999999999999999999999999999999988888877 688889999999998
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCC
Q 005506 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA 186 (693)
Q Consensus 107 ~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~ 186 (693)
+.++++++.|+.|++||+... .....+..|...|.+++|+| ++.++++++.||.|++||++..+..
T Consensus 105 ~~~~~~~~~~~~i~~~~~~~~----------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~--- 170 (289)
T cd00200 105 GRILSSSSRDKTIKVWDVETG----------KCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKCV--- 170 (289)
T ss_pred CCEEEEecCCCeEEEEECCCc----------EEEEEeccCCCcEEEEEEcC-cCCEEEEEcCCCcEEEEEccccccc---
Confidence 578888888999999999853 44666778999999999999 4678888888999999999865422
Q ss_pred CCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccc
Q 005506 187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266 (693)
Q Consensus 187 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~ 266 (693)
. ....+...+.++.|+|+ +..+++++.|+.|++||++..+.+..+
T Consensus 171 --------~--------------~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~d~~~~~~~~~~------------ 215 (289)
T cd00200 171 --------A--------------TLTGHTGEVNSVAFSPD-GEKLLSSSSDGTIKLWDLSTGKCLGTL------------ 215 (289)
T ss_pred --------e--------------eEecCccccceEEECCC-cCEEEEecCCCcEEEEECCCCceecch------------
Confidence 0 01133457899999997 578888888999999999875443222
Q ss_pred cccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCC
Q 005506 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN 334 (693)
Q Consensus 267 ~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~ 334 (693)
..|.. .|.++.|+|++.++++++.++.|++||+.++........+...+..++|+|...
T Consensus 216 --------~~~~~-~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 274 (289)
T cd00200 216 --------RGHEN-GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGK 274 (289)
T ss_pred --------hhcCC-ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCC
Confidence 11222 599999999988888888899999999998655444444555677788888643
No 50
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.91 E-value=8.3e-24 Score=213.53 Aligned_cols=254 Identities=22% Similarity=0.300 Sum_probs=203.1
Q ss_pred CCCcCcccccchhhhcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEe
Q 005506 23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102 (693)
Q Consensus 23 ~~~~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~ 102 (693)
....+..+++|..+..+...+.+|.|-.++|+++.|.++++.+++++.|+.+++|++...+...++ .+|.+.|+++.|.
T Consensus 192 tgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TL-sGHtdkVt~ak~~ 270 (459)
T KOG0288|consen 192 TGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTL-SGHTDKVTAAKFK 270 (459)
T ss_pred hcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhh-cccccceeeehhh
Confidence 356778889999888888999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred eCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCC
Q 005506 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (693)
Q Consensus 103 p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~ 182 (693)
... ..+++|+.|.+|++||+... .+.+++. ....+..|... +..++||-.|++||+||+|+...
T Consensus 271 ~~~--~~vVsgs~DRtiK~WDl~k~----------~C~kt~l-~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~ 334 (459)
T KOG0288|consen 271 LSH--SRVVSGSADRTIKLWDLQKA----------YCSKTVL-PGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADK 334 (459)
T ss_pred ccc--cceeeccccchhhhhhhhhh----------heecccc-ccccccceEec---ceeeeecccccceEEEeccCCce
Confidence 873 44999999999999999853 2333332 23556677765 46788999999999999998763
Q ss_pred CCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCC
Q 005506 183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP 262 (693)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~ 262 (693)
. ...+. ...|+++..+++ +..|++++.|.++.+.|+|+......+..
T Consensus 335 ~-------------------------~sv~~-gg~vtSl~ls~~-g~~lLsssRDdtl~viDlRt~eI~~~~sA------ 381 (459)
T KOG0288|consen 335 T-------------------------RSVPL-GGRVTSLDLSMD-GLELLSSSRDDTLKVIDLRTKEIRQTFSA------ 381 (459)
T ss_pred e-------------------------eEeec-CcceeeEeeccC-CeEEeeecCCCceeeeecccccEEEEeec------
Confidence 2 11112 237999999997 67788889999999999998653332211
Q ss_pred cccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCC--ceeEEeccCCCccc
Q 005506 263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDA--SKIMSFTPTLNGLE 337 (693)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~--~~~~~~~p~~~g~~ 337 (693)
..+ ....-++.+.|||++.|+++|+.||.|+||++.+++...+.-....+ +..+.|+|...++.
T Consensus 382 -~g~----------k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Ll 447 (459)
T KOG0288|consen 382 -EGF----------KCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLL 447 (459)
T ss_pred -ccc----------ccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhh
Confidence 001 11123889999999999999999999999999998877776655555 67788988766653
No 51
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.91 E-value=2.6e-23 Score=214.64 Aligned_cols=260 Identities=18% Similarity=0.213 Sum_probs=188.6
Q ss_pred cceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC----cEEEEeccCCCcceEEEEEeeCCCCCEEEEEeC
Q 005506 40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR----KLLHSIETGHSANVFCTKFVPETSDELVVSGAG 115 (693)
Q Consensus 40 l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~----~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~ 115 (693)
+..+..|++|+..|.++++.|.|.+|+|||.|.+|+.||+..+ +..+.|.......|.++.|+|+ +..|++.+.
T Consensus 157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~T--g~~iLvvsg 234 (641)
T KOG0772|consen 157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVT--GDQILVVSG 234 (641)
T ss_pred ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCC--CCeEEEEec
Confidence 4567788999999999999999999999999999999999754 2334454445567999999998 567777777
Q ss_pred CCcEEEEEcCCCCCC-CC-CCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCccc
Q 005506 116 DAEVRLFNLSRFSGR-GL-DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 193 (693)
Q Consensus 116 Dg~V~vwdl~~~~~~-~~-~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~ 193 (693)
....+|+|-.-.... +. ...-+.-+..-++|...+++.+|+|.+...|+|++.||++|+||+...+..
T Consensus 235 ~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q---------- 304 (641)
T KOG0772|consen 235 SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ---------- 304 (641)
T ss_pred CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh----------
Confidence 788999987632110 00 011112234456899999999999999999999999999999999876522
Q ss_pred ceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccc
Q 005506 194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 273 (693)
Q Consensus 194 ~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (693)
..++..... .+....+++|+|+|+ +.+||+|+.||.|.+|+.+..... | ...+...|..
T Consensus 305 ~qVik~k~~---------~g~Rv~~tsC~~nrd-g~~iAagc~DGSIQ~W~~~~~~v~--------p---~~~vk~AH~~ 363 (641)
T KOG0772|consen 305 LQVIKTKPA---------GGKRVPVTSCAWNRD-GKLIAAGCLDGSIQIWDKGSRTVR--------P---VMKVKDAHLP 363 (641)
T ss_pred eeEEeeccC---------CCcccCceeeecCCC-cchhhhcccCCceeeeecCCcccc--------c---ceEeeeccCC
Confidence 122221111 134568899999998 688999999999999998754211 0 1111112221
Q ss_pred cCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEee---cCCCceeEEeccCCCccc
Q 005506 274 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYT---VGDASKIMSFTPTLNGLE 337 (693)
Q Consensus 274 ~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~---~~~~~~~~~~~p~~~g~~ 337 (693)
+..|++|+||++|++|++-+.|+++++|||+..+++..... ...+....+|+|+..-+.
T Consensus 364 -----g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~ 425 (641)
T KOG0772|consen 364 -----GQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLIL 425 (641)
T ss_pred -----CCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEE
Confidence 12599999999999999999999999999999775544332 123455678898865543
No 52
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.91 E-value=2.7e-22 Score=237.97 Aligned_cols=227 Identities=16% Similarity=0.218 Sum_probs=172.6
Q ss_pred eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC----c----EEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 005506 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR----K----LLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (693)
Q Consensus 46 l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~----~----~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg 117 (693)
+.+|.+.|++++|+|+|++||||+.|+.|+||++.+. . ....+ .+...|.+++|+|.. +.+|++++.|+
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~-~~~las~~~Dg 555 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL--ASRSKLSGICWNSYI-KSQVASSNFEG 555 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe--cccCceeeEEeccCC-CCEEEEEeCCC
Confidence 4469999999999999999999999999999997532 1 22233 345689999999864 68999999999
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEE
Q 005506 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (693)
Q Consensus 118 ~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l 197 (693)
+|++||+... ..+..+.+|...|++++|+|.++.+|+||+.||+|++||++++... ..+
T Consensus 556 ~v~lWd~~~~----------~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~-----------~~~ 614 (793)
T PLN00181 556 VVQVWDVARS----------QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI-----------GTI 614 (793)
T ss_pred eEEEEECCCC----------eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE-----------EEE
Confidence 9999999854 4577788999999999999877889999999999999999875421 111
Q ss_pred EeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCC
Q 005506 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 277 (693)
Q Consensus 198 ~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (693)
. +...+.++.|++.++.+|++|+.||.|++||+++... .+..+ .+|
T Consensus 615 -----------~----~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~------------~~~~~-------~~h 660 (793)
T PLN00181 615 -----------K----TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL------------PLCTM-------IGH 660 (793)
T ss_pred -----------e----cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc------------cceEe-------cCC
Confidence 0 1235789999776689999999999999999986431 11111 234
Q ss_pred CccceEEEEEcCCCCEEEEEecCCcEEEEECCCCC------cceEEeecCCCceeEEeccC
Q 005506 278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG------GRAMRYTVGDASKIMSFTPT 332 (693)
Q Consensus 278 ~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~------~~~~~~~~~~~~~~~~~~p~ 332 (693)
.. .|+++.|. ++.+|++++.|++|++||+..+. ....+..+...+..++|+|.
T Consensus 661 ~~-~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~ 719 (793)
T PLN00181 661 SK-TVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVS 719 (793)
T ss_pred CC-CEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCC
Confidence 43 59999997 78899999999999999998531 11122233334455666665
No 53
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.91 E-value=5e-23 Score=210.92 Aligned_cols=231 Identities=19% Similarity=0.289 Sum_probs=184.2
Q ss_pred ccceeEEeccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEECCCCcE------EEEeccCCCcceEEEEEeeCCCCCEEE
Q 005506 39 RLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKL------LHSIETGHSANVFCTKFVPETSDELVV 111 (693)
Q Consensus 39 ~l~~~~~l~gH~~~V~~l~~s~~-g~~LaSgs~Dg~I~IWd~~~~~~------~~~l~~~h~~~I~sv~f~p~~~~~~l~ 111 (693)
...+...|.||++.=..|+|++. .-.|++|+.|++|++||+..... ...+..+|...|..++|+|.. ..+|+
T Consensus 166 ~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h-~~lF~ 244 (422)
T KOG0264|consen 166 ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLH-EDLFG 244 (422)
T ss_pred cCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccc-hhhhe
Confidence 45566789999998889999995 44799999999999999975322 233447999999999999986 78999
Q ss_pred EEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCc
Q 005506 112 SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ 191 (693)
Q Consensus 112 sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~ 191 (693)
+++.|+.+.|||++... .++.....+|...|.+++|+|.+..+|||||.|++|.+||+|....+
T Consensus 245 sv~dd~~L~iwD~R~~~--------~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~-------- 308 (422)
T KOG0264|consen 245 SVGDDGKLMIWDTRSNT--------SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKP-------- 308 (422)
T ss_pred eecCCCeEEEEEcCCCC--------CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccC--------
Confidence 99999999999999631 15677888999999999999999999999999999999999987532
Q ss_pred ccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCC-CCCCcccccccC
Q 005506 192 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRM-SPPPCVNYFCPM 270 (693)
Q Consensus 192 ~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~-~~~~~~~~~~~~ 270 (693)
+....+|...|.++.|+|.....||+++.|+.+.|||+.......+..... .|+. +...
T Consensus 309 ----------------lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppE-llF~--- 368 (422)
T KOG0264|consen 309 ----------------LHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPE-LLFI--- 368 (422)
T ss_pred ----------------ceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcc-eeEE---
Confidence 444557888999999999999999999999999999998654333211111 2221 1111
Q ss_pred ccccCCCCccceEEEEEcCCCCEEE-EEecCCcEEEEECCC
Q 005506 271 HLSEHGRSSLHLTHVTFSPNGEEVL-LSYSGEHVYLMDVNH 310 (693)
Q Consensus 271 ~~~~~~~~~~~V~~v~fspdg~~L~-sgs~Dg~V~lwdl~~ 310 (693)
-.||.. .|..+.|+|+..+++ +.+.|+.+.||.+..
T Consensus 369 ---HgGH~~-kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 369 ---HGGHTA-KVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ---ecCccc-ccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 145665 599999999998765 555699999999875
No 54
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.91 E-value=2.7e-23 Score=203.21 Aligned_cols=241 Identities=19% Similarity=0.240 Sum_probs=203.2
Q ss_pred EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEc
Q 005506 45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124 (693)
Q Consensus 45 ~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl 124 (693)
.|.-|..+|.|++|+.|...||+|+.||.|+||.+.+|.|++.+...|+..|+|+.|+.+ +..+++++.|.+||++-+
T Consensus 258 ~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD--~SqiLS~sfD~tvRiHGl 335 (508)
T KOG0275|consen 258 NFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRD--NSQILSASFDQTVRIHGL 335 (508)
T ss_pred ceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccC--cchhhcccccceEEEecc
Confidence 345688999999999999999999999999999999999999998899999999999998 588999999999999999
Q ss_pred CCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCc
Q 005506 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (693)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (693)
..+ ++++.+.+|++.|+...|.+ +++.+++++.||+|++|+..+.+.. ..
T Consensus 336 KSG----------K~LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~KtteC~-----------~T-------- 385 (508)
T KOG0275|consen 336 KSG----------KCLKEFRGHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKTTECL-----------ST-------- 385 (508)
T ss_pred ccc----------hhHHHhcCccccccceEEcC-CCCeEEEecCCccEEEecCcchhhh-----------hh--------
Confidence 865 67899999999999999999 7788889999999999999886533 11
Q ss_pred eeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEE
Q 005506 205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH 284 (693)
Q Consensus 205 ~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 284 (693)
..+.+...+|.++-.-|.++..++++....+|+|.++.- + .++.|..+. ..+....+
T Consensus 386 ----fk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG-Q-------------vVrsfsSGk-----REgGdFi~ 442 (508)
T KOG0275|consen 386 ----FKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG-Q-------------VVRSFSSGK-----REGGDFIN 442 (508)
T ss_pred ----ccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc-e-------------EEeeeccCC-----ccCCceEE
Confidence 122234567889999998899999999999999998863 2 233332111 22234678
Q ss_pred EEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCcccccC
Q 005506 285 VTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQP 340 (693)
Q Consensus 285 v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~ 340 (693)
++.||.|.++++.+.|+.+|.|.+.+++.......+...+..++.+|..+.++.+.
T Consensus 443 ~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYs 498 (508)
T KOG0275|consen 443 AILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYS 498 (508)
T ss_pred EEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhc
Confidence 89999999999999999999999999998888888888888899999887775543
No 55
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.90 E-value=5.1e-22 Score=235.61 Aligned_cols=239 Identities=20% Similarity=0.279 Sum_probs=181.1
Q ss_pred cCcccccchhhhcccceeEEeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeC
Q 005506 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 104 (693)
Q Consensus 26 ~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~-~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~ 104 (693)
.+..+++|+. .+.+.+..+.+|.+.|++++|+| ++.+|+||+.|++|+|||+.++..+..+ .. ...|.++.|.+.
T Consensus 553 ~Dg~v~lWd~--~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~-~~-~~~v~~v~~~~~ 628 (793)
T PLN00181 553 FEGVVQVWDV--ARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI-KT-KANICCVQFPSE 628 (793)
T ss_pred CCCeEEEEEC--CCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE-ec-CCCeEEEEEeCC
Confidence 3566777763 45567888999999999999997 7899999999999999999999888888 33 468999999765
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCC
Q 005506 105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP 184 (693)
Q Consensus 105 ~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~ 184 (693)
. +.+|++|+.|+.|++||++... .++..+.+|...|.++.|. ++.+|++++.|++|++||++......
T Consensus 629 ~-g~~latgs~dg~I~iwD~~~~~---------~~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~~~~~ 696 (793)
T PLN00181 629 S-GRSLAFGSADHKVYYYDLRNPK---------LPLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMSISGI 696 (793)
T ss_pred C-CCEEEEEeCCCeEEEEECCCCC---------ccceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCCcccc
Confidence 4 7899999999999999998532 2456778899999999997 45689999999999999998642100
Q ss_pred CCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcc
Q 005506 185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV 264 (693)
Q Consensus 185 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~ 264 (693)
....+....+|...+.+++|+|+ +.+|++|+.|+.|++|+.....++..+...... .+
T Consensus 697 -------------------~~~~l~~~~gh~~~i~~v~~s~~-~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~--~~ 754 (793)
T PLN00181 697 -------------------NETPLHSFMGHTNVKNFVGLSVS-DGYIATGSETNEVFVYHKAFPMPVLSYKFKTID--PV 754 (793)
T ss_pred -------------------CCcceEEEcCCCCCeeEEEEcCC-CCEEEEEeCCCEEEEEECCCCCceEEEecccCC--cc
Confidence 00012223356667889999997 689999999999999998765443222110000 00
Q ss_pred cccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEEC
Q 005506 265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV 308 (693)
Q Consensus 265 ~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl 308 (693)
. . .....+ ...|.+++|+|++..|++|+.||.|+||++
T Consensus 755 ~----~-~~~~~~-~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 755 S----G-LEVDDA-SQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred c----c-cccCCC-CcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 0 0 000112 226999999999999999999999999997
No 56
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.90 E-value=7.5e-24 Score=200.97 Aligned_cols=236 Identities=21% Similarity=0.295 Sum_probs=188.3
Q ss_pred ccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 005506 39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 118 (693)
Q Consensus 39 ~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~ 118 (693)
...-+.+|.||.++|++...+.+..+-|+++.|-+.+|||.-++..++++ .|.--|..++|+.++ ++|+||+.+..
T Consensus 48 tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf--~hkhivk~~af~~ds--~~lltgg~ekl 123 (334)
T KOG0278|consen 48 TGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSF--EHKHIVKAVAFSQDS--NYLLTGGQEKL 123 (334)
T ss_pred CCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhh--hhhheeeeEEecccc--hhhhccchHHH
Confidence 44558899999999999999999999999999999999999999999998 477789999999995 89999999999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCC--------
Q 005506 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSH-------- 190 (693)
Q Consensus 119 V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~-------- 190 (693)
+||||++... .+...+.+|++.|+.+.|.. ..+.|+|++.|++||+||.|++..+..+...+
T Consensus 124 lrvfdln~p~---------App~E~~ghtg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs 193 (334)
T KOG0278|consen 124 LRVFDLNRPK---------APPKEISGHTGGIRTVLWCH-EDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVS 193 (334)
T ss_pred hhhhhccCCC---------CCchhhcCCCCcceeEEEec-cCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeec
Confidence 9999999753 56778889999999999998 66788899999999999999987553222111
Q ss_pred cccc---------eEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCC
Q 005506 191 QECR---------NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP 261 (693)
Q Consensus 191 ~~~~---------~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~ 261 (693)
++.. ..+|+..+-.... ...-...|.+.+.+|.. ..+++|+.|..++.||..++..+..+
T Consensus 194 ~dG~ilTia~gssV~Fwdaksf~~lK---s~k~P~nV~SASL~P~k-~~fVaGged~~~~kfDy~TgeEi~~~------- 262 (334)
T KOG0278|consen 194 QDGRILTIAYGSSVKFWDAKSFGLLK---SYKMPCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTGEEIGSY------- 262 (334)
T ss_pred cCCCEEEEecCceeEEecccccccee---eccCccccccccccCCC-ceEEecCcceEEEEEeccCCceeeec-------
Confidence 1111 1223322211111 11223568889999985 89999999999999999988654321
Q ss_pred CcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCC
Q 005506 262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~ 312 (693)
..+|.+ +|.+|.|+|+|...++|+.||+|+||.+..++
T Consensus 263 ------------nkgh~g-pVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 263 ------------NKGHFG-PVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ------------ccCCCC-ceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 145655 79999999999999999999999999988754
No 57
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=2.2e-23 Score=207.27 Aligned_cols=237 Identities=18% Similarity=0.279 Sum_probs=186.0
Q ss_pred eEEeccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 005506 43 ERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 121 (693)
Q Consensus 43 ~~~l~gH~~~V~~l~~s~~g-~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~v 121 (693)
+..|.||.+.|.||+=+|.. ..+|||+.||.|+|||+.+..++.++ ..|.+.|..|++... .+++++.|.+|+.
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f-~AH~G~V~Gi~v~~~----~~~tvgdDKtvK~ 133 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTF-KAHEGLVRGICVTQT----SFFTVGDDKTVKQ 133 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhee-ecccCceeeEEeccc----ceEEecCCcceee
Confidence 45679999999999999976 78999999999999999999999999 799999999999863 6889999999999
Q ss_pred EEcCCCCCC----------------------------CCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEE
Q 005506 122 FNLSRFSGR----------------------------GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR 173 (693)
Q Consensus 122 wdl~~~~~~----------------------------~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~ 173 (693)
|-+..+... ..+.....|+..+.--...|.++.|+|....+|++|+.|+.|.
T Consensus 134 wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIv 213 (433)
T KOG0268|consen 134 WKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIV 213 (433)
T ss_pred eeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceE
Confidence 985432100 0122233566777767788999999999999999999999999
Q ss_pred EEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcc
Q 005506 174 QHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS 253 (693)
Q Consensus 174 lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~ 253 (693)
+||+|+..+. ..++..+++ +.|+|+| ....+++|+.|..++.||+|.++.
T Consensus 214 LyD~R~~~Pl----------~KVi~~mRT----------------N~IswnP-eafnF~~a~ED~nlY~~DmR~l~~--- 263 (433)
T KOG0268|consen 214 LYDLRQASPL----------KKVILTMRT----------------NTICWNP-EAFNFVAANEDHNLYTYDMRNLSR--- 263 (433)
T ss_pred EEecccCCcc----------ceeeeeccc----------------cceecCc-cccceeeccccccceehhhhhhcc---
Confidence 9999998755 234444443 4689999 588999999999999999997641
Q ss_pred cccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEE--ecc
Q 005506 254 CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMS--FTP 331 (693)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~--~~p 331 (693)
.+..+ .+|.+ .|++|.|||.|+.+++|+.|.+|+||.++.+.. .-.|.......+++ |+-
T Consensus 264 ---------p~~v~-------~dhvs-AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~S-RdiYhtkRMq~V~~Vk~S~ 325 (433)
T KOG0268|consen 264 ---------PLNVH-------KDHVS-AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHS-RDIYHTKRMQHVFCVKYSM 325 (433)
T ss_pred ---------cchhh-------cccce-eEEEeccCCCcchhccccccceEEEeecCCCcc-hhhhhHhhhheeeEEEEec
Confidence 12222 34544 699999999999999999999999999998653 33343344444443 444
Q ss_pred C
Q 005506 332 T 332 (693)
Q Consensus 332 ~ 332 (693)
+
T Consensus 326 D 326 (433)
T KOG0268|consen 326 D 326 (433)
T ss_pred c
Confidence 3
No 58
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=5.9e-23 Score=204.49 Aligned_cols=244 Identities=16% Similarity=0.246 Sum_probs=206.2
Q ss_pred cchhhhcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEE
Q 005506 32 MHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV 111 (693)
Q Consensus 32 ~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~ 111 (693)
.....+.+..+.+.+.||..+|+.+-|+|+-.++++++.|++|++||+.++++...+ .||...|++|.|+.. |.+++
T Consensus 90 ~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~L-rGHt~sv~di~~~a~--Gk~l~ 166 (406)
T KOG0295|consen 90 TPALWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSL-RGHTDSVFDISFDAS--GKYLA 166 (406)
T ss_pred ChhhcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhh-hccccceeEEEEecC--ccEEE
Confidence 344578888888999999999999999999999999999999999999999998888 799999999999988 79999
Q ss_pred EEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCc
Q 005506 112 SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ 191 (693)
Q Consensus 112 sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~ 191 (693)
+++.|-.+++||.... ..+++...+|...|.+++|-| .+.+|+|++.|.+|+.|++.++-
T Consensus 167 tcSsDl~~~LWd~~~~---------~~c~ks~~gh~h~vS~V~f~P-~gd~ilS~srD~tik~We~~tg~---------- 226 (406)
T KOG0295|consen 167 TCSSDLSAKLWDFDTF---------FRCIKSLIGHEHGVSSVFFLP-LGDHILSCSRDNTIKAWECDTGY---------- 226 (406)
T ss_pred ecCCccchhheeHHHH---------HHHHHHhcCcccceeeEEEEe-cCCeeeecccccceeEEecccce----------
Confidence 9999999999999863 156788889999999999999 56899999999999999998864
Q ss_pred ccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCc
Q 005506 192 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 271 (693)
Q Consensus 192 ~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (693)
.+..+++|...|..+..+.+ +.++|+++.|.+|++|-+.+.+ |...+
T Consensus 227 ---------------cv~t~~~h~ewvr~v~v~~D-Gti~As~s~dqtl~vW~~~t~~-------------~k~~l---- 273 (406)
T KOG0295|consen 227 ---------------CVKTFPGHSEWVRMVRVNQD-GTIIASCSNDQTLRVWVVATKQ-------------CKAEL---- 273 (406)
T ss_pred ---------------eEEeccCchHhEEEEEecCC-eeEEEecCCCceEEEEEeccch-------------hhhhh----
Confidence 23445567779999999997 7999999999999999988763 22221
Q ss_pred cccCCCCccceEEEEEcCC---------------CCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCc
Q 005506 272 LSEHGRSSLHLTHVTFSPN---------------GEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNG 335 (693)
Q Consensus 272 ~~~~~~~~~~V~~v~fspd---------------g~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~g 335 (693)
+.|.. +|-+++|.|. ++++.+++.|++|++||+.++.+...+..++.-++.++|+|...-
T Consensus 274 ---R~hEh-~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gky 348 (406)
T KOG0295|consen 274 ---REHEH-PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKY 348 (406)
T ss_pred ---hcccc-ceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeE
Confidence 22332 4667777652 368999999999999999998877777888888889999986543
No 59
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.90 E-value=1.6e-22 Score=207.26 Aligned_cols=217 Identities=19% Similarity=0.331 Sum_probs=174.6
Q ss_pred cCCCcEEEEEECCC-CCEEEEEeCCCcEEEEECCCCcEE----------EEeccCCCcceEEEEEeeCCCCCEEEEEeCC
Q 005506 48 GHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLL----------HSIETGHSANVFCTKFVPETSDELVVSGAGD 116 (693)
Q Consensus 48 gH~~~V~~l~~s~~-g~~LaSgs~Dg~I~IWd~~~~~~~----------~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~D 116 (693)
-|.+.|+.+.+-|. ..++|+++..+.|.|||+.+..-. ..+ .+|...-++|+|++.. .-.|++|+.|
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L-~gH~~eg~glsWn~~~-~g~Lls~~~d 199 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRL-KGHEKEGYGLSWNRQQ-EGTLLSGSDD 199 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEE-Eeeccccccccccccc-ceeEeeccCC
Confidence 49999999999995 568888899999999998754211 145 6899888999999986 5689999999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceE
Q 005506 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (693)
Q Consensus 117 g~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~ 196 (693)
++|++||+...... .....+...+.+|...|..++|+|....+|++++.|+.+.|||+|+....
T Consensus 200 ~~i~lwdi~~~~~~---~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~------------- 263 (422)
T KOG0264|consen 200 HTICLWDINAESKE---DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSK------------- 263 (422)
T ss_pred CcEEEEeccccccC---CccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCC-------------
Confidence 99999999864321 22236788899999999999999999999999999999999999973211
Q ss_pred EEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCC
Q 005506 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (693)
Q Consensus 197 l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (693)
.......|...|.|++|+|.+..+||+|+.|++|.+||+|++.. ++..+ .+
T Consensus 264 ----------~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~------------~lh~~-------e~ 314 (422)
T KOG0264|consen 264 ----------PSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK------------PLHTF-------EG 314 (422)
T ss_pred ----------CcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc------------Cceec-------cC
Confidence 11122367889999999999999999999999999999998642 22222 34
Q ss_pred CCccceEEEEEcCCCC-EEEEEecCCcEEEEECCCCC
Q 005506 277 RSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 277 ~~~~~V~~v~fspdg~-~L~sgs~Dg~V~lwdl~~~~ 312 (693)
|.. .|..|.|||... .|++++.|+.+.+||+..-.
T Consensus 315 H~d-ev~~V~WSPh~etvLASSg~D~rl~vWDls~ig 350 (422)
T KOG0264|consen 315 HED-EVFQVEWSPHNETVLASSGTDRRLNVWDLSRIG 350 (422)
T ss_pred CCc-ceEEEEeCCCCCceeEecccCCcEEEEeccccc
Confidence 555 699999999765 56677779999999998744
No 60
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=3.7e-22 Score=194.56 Aligned_cols=263 Identities=14% Similarity=0.136 Sum_probs=187.8
Q ss_pred cCCCcEEEEEECC-CCCEEEEEeCCCcEEEEECCC-CcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcC
Q 005506 48 GHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSS-RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (693)
Q Consensus 48 gH~~~V~~l~~s~-~g~~LaSgs~Dg~I~IWd~~~-~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~ 125 (693)
...+.|.+|+||| ...+|+.||+|++|++|++.. +..+.+-...|.++|++++|+.+ |..+++|+.|+.+++||+.
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsdd--gskVf~g~~Dk~~k~wDL~ 102 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDD--GSKVFSGGCDKQAKLWDLA 102 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccC--CceEEeeccCCceEEEEcc
Confidence 3568899999999 566777999999999999986 45555444689999999999998 6999999999999999999
Q ss_pred CCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCc--EEEEEeCCCcEEEEeCCCCCCCCCCCC---------------
Q 005506 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH--VVWSASEDGTLRQHDFRQGSSCPPAGS--------------- 188 (693)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~--~l~Sgs~Dg~V~lwDlr~~~~~~~~~~--------------- 188 (693)
.+ .+..+..|..+|+.+.|-+ +.. +|+|||.|++|+.||+|...++..+..
T Consensus 103 S~-----------Q~~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~v 170 (347)
T KOG0647|consen 103 SG-----------QVSQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAV 170 (347)
T ss_pred CC-----------CeeeeeecccceeEEEEec-CCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeE
Confidence 64 2667788999999999987 444 899999999999999998775422111
Q ss_pred -CCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCccccc
Q 005506 189 -SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYF 267 (693)
Q Consensus 189 -~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~ 267 (693)
...+....++.+..+....-.....-...+.|+++.+++ ...+.|+-+|.+-|..+....+...+. -+|-+.-
T Consensus 171 Vata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~-~~~alGsiEGrv~iq~id~~~~~~nFt-----FkCHR~~ 244 (347)
T KOG0647|consen 171 VATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDK-DGFALGSIEGRVAIQYIDDPNPKDNFT-----FKCHRST 244 (347)
T ss_pred EEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecC-CceEeeeecceEEEEecCCCCccCcee-----EEEeccC
Confidence 111222344555443322111111134468899999974 566999999999999988754322211 1222111
Q ss_pred ccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCc
Q 005506 268 CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNG 335 (693)
Q Consensus 268 ~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~g 335 (693)
.+ .. ..-+.|++|+|+|.-..|+++++||++.+||-+...+......+..++...+|+.+..-
T Consensus 245 ~~----~~-~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~i 307 (347)
T KOG0647|consen 245 NS----VN-DDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSI 307 (347)
T ss_pred CC----CC-CceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCE
Confidence 00 00 11347999999999999999999999999998875444444555666666666655433
No 61
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.90 E-value=1.2e-23 Score=207.66 Aligned_cols=215 Identities=16% Similarity=0.298 Sum_probs=178.6
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCC
Q 005506 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 128 (693)
Q Consensus 49 H~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~ 128 (693)
..+.|.|+.+. ...++||..|.+|+|||..+..++..+ .||++.|.|+.|.. +.|++|+.|.+|+|||++++
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L-~GHtGSVLCLqyd~----rviisGSSDsTvrvWDv~tg- 267 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKIL-TGHTGSVLCLQYDE----RVIVSGSSDSTVRVWDVNTG- 267 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhh-hcCCCcEEeeeccc----eEEEecCCCceEEEEeccCC-
Confidence 45789999985 457999999999999999998898888 89999999999973 69999999999999999976
Q ss_pred CCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeee
Q 005506 129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 208 (693)
Q Consensus 129 ~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 208 (693)
+++.++-.|...|..+.|+. .+++|++.|.++.+||+..+... .+..+
T Consensus 268 ---------e~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~i--------t~rrV------------ 315 (499)
T KOG0281|consen 268 ---------EPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDI--------TLRRV------------ 315 (499)
T ss_pred ---------chhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHH--------HHHHH------------
Confidence 77899999999999999964 58899999999999999875411 12222
Q ss_pred cCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEc
Q 005506 209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS 288 (693)
Q Consensus 209 ~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fs 288 (693)
..+|...|+.+.|+. +++++++.|.+|++|++.+..-+ .++ ++|.. .|-++.
T Consensus 316 --LvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~efv-------------Rtl-------~gHkR-GIAClQ-- 367 (499)
T KOG0281|consen 316 --LVGHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTCEFV-------------RTL-------NGHKR-GIACLQ-- 367 (499)
T ss_pred --Hhhhhhheeeecccc---ceEEEecCCceEEEEeccceeee-------------hhh-------hcccc-cceehh--
Confidence 236778899999975 49999999999999999987543 333 44543 354444
Q ss_pred CCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEecc
Q 005506 289 PNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP 331 (693)
Q Consensus 289 pdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p 331 (693)
..|+++++|+.|.+|++||+..|.+..++.++.+.++.+.|..
T Consensus 368 Yr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~ 410 (499)
T KOG0281|consen 368 YRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN 410 (499)
T ss_pred ccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC
Confidence 3789999999999999999999999888888888888877754
No 62
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.89 E-value=5.5e-22 Score=193.24 Aligned_cols=231 Identities=20% Similarity=0.301 Sum_probs=173.8
Q ss_pred eeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 005506 42 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 121 (693)
Q Consensus 42 ~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~v 121 (693)
-...++||.++|..+.|.++++.|+|++.|++|+.||.++++++..+ .+|..-|.++.-+.-+ ..++.||+.|+++++
T Consensus 82 N~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~-k~h~~~vNs~~p~rrg-~~lv~SgsdD~t~kl 159 (338)
T KOG0265|consen 82 NFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKH-KGHTSFVNSLDPSRRG-PQLVCSGSDDGTLKL 159 (338)
T ss_pred ceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehh-ccccceeeecCccccC-CeEEEecCCCceEEE
Confidence 34567899999999999999999999999999999999999999999 7999999998843332 468899999999999
Q ss_pred EEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCC------------------
Q 005506 122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC------------------ 183 (693)
Q Consensus 122 wdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~------------------ 183 (693)
||++.. .+++++. ....++++.|.. .+..+.+|+-|+.|++||+|.....
T Consensus 160 ~D~R~k----------~~~~t~~-~kyqltAv~f~d-~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~ 227 (338)
T KOG0265|consen 160 WDIRKK----------EAIKTFE-NKYQLTAVGFKD-TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRY 227 (338)
T ss_pred Eeeccc----------chhhccc-cceeEEEEEecc-cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccC
Confidence 999964 4455554 356788899987 4455669999999999999876532
Q ss_pred -CCCCCCCcccceEEEeccCCce----eeecCCCCCccc--eEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCccccc
Q 005506 184 -PPAGSSHQECRNILLDLRCGAK----RSLADPPKQTLS--LKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK 256 (693)
Q Consensus 184 -~~~~~~~~~~~~~l~~~~~~~~----~~l~~~~~~~~~--v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~ 256 (693)
....+..+++...+|+.+.-.. ..+.....|... .-.++|+|+ +..+.+|+.|..+++||.....
T Consensus 228 gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~-~~~i~ags~dr~vyvwd~~~r~------- 299 (338)
T KOG0265|consen 228 GSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN-GTKITAGSADRFVYVWDTTSRR------- 299 (338)
T ss_pred CCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCC-CCccccccccceEEEeeccccc-------
Confidence 1122333445555666553211 122222233333 446889997 7899999999999999987642
Q ss_pred CCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEEC
Q 005506 257 RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV 308 (693)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl 308 (693)
..++.|+|.. .|+.+.|+|....|++++.|.+|++=.+
T Consensus 300 -------~lyklpGh~g-------svn~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 300 -------ILYKLPGHYG-------SVNEVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred -------EEEEcCCcce-------eEEEeeecCCCcEEEEeccCceeEeecc
Confidence 3455555543 4999999999999999999999998543
No 63
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=2.7e-22 Score=206.89 Aligned_cols=240 Identities=22% Similarity=0.327 Sum_probs=186.5
Q ss_pred ccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 005506 39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 118 (693)
Q Consensus 39 ~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~ 118 (693)
.....+++.-..+.|.+++|-.||.+||.|...|.|+|+|+.+...++.+ .+|..+|..+.|+|.. +.+|++|+.|+.
T Consensus 57 ~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~-~ah~apv~~~~f~~~d-~t~l~s~sDd~v 134 (487)
T KOG0310|consen 57 TRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQL-YAHQAPVHVTKFSPQD-NTMLVSGSDDKV 134 (487)
T ss_pred hhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHH-hhccCceeEEEecccC-CeEEEecCCCce
Confidence 33445556667789999999999999999999999999997765566667 7999999999999985 789999999999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEE
Q 005506 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (693)
Q Consensus 119 V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~ 198 (693)
+++||+.+. .....+.+|++.|.+.+|+|.++++++|||.||+|++||+|.... .+.
T Consensus 135 ~k~~d~s~a----------~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~-------------~v~ 191 (487)
T KOG0310|consen 135 VKYWDLSTA----------YVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS-------------RVV 191 (487)
T ss_pred EEEEEcCCc----------EEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc-------------eeE
Confidence 999999964 224578899999999999999999999999999999999998641 111
Q ss_pred eccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCC
Q 005506 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (693)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (693)
.+ .|..+|-++.+-|. +.++|+++ ...|++||+-++..+- ..+ ..|.
T Consensus 192 el------------nhg~pVe~vl~lps-gs~iasAg-Gn~vkVWDl~~G~qll------------~~~-------~~H~ 238 (487)
T KOG0310|consen 192 EL------------NHGCPVESVLALPS-GSLIASAG-GNSVKVWDLTTGGQLL------------TSM-------FNHN 238 (487)
T ss_pred Ee------------cCCCceeeEEEcCC-CCEEEEcC-CCeEEEEEecCCceeh------------hhh-------hccc
Confidence 11 45668899999996 56777765 4689999998654221 111 1133
Q ss_pred ccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCcccc
Q 005506 279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLEL 338 (693)
Q Consensus 279 ~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~ 338 (693)
. .|||+.+..++..|++++-|+.|++||+.+.+ ......-..++-.++.+|+..-+..
T Consensus 239 K-tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~K-vv~s~~~~~pvLsiavs~dd~t~vi 296 (487)
T KOG0310|consen 239 K-TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYK-VVHSWKYPGPVLSIAVSPDDQTVVI 296 (487)
T ss_pred c-eEEEEEeecCCceEeecccccceEEEEccceE-EEEeeecccceeeEEecCCCceEEE
Confidence 3 69999999999999999999999999977732 2222233455666777775444333
No 64
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.89 E-value=3.6e-22 Score=199.91 Aligned_cols=203 Identities=21% Similarity=0.305 Sum_probs=165.1
Q ss_pred ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC-------------------------CcEEEEeccCCCcceEEEEE
Q 005506 47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS-------------------------RKLLHSIETGHSANVFCTKF 101 (693)
Q Consensus 47 ~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~-------------------------~~~~~~l~~~h~~~I~sv~f 101 (693)
+||...|-+++..++|..++|||.|..|.||+..+ +.++.++ .||..+|.+|.|
T Consensus 190 ~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl-~GHt~~Vs~V~w 268 (423)
T KOG0313|consen 190 RGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTL-EGHTEPVSSVVW 268 (423)
T ss_pred cccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEe-cccccceeeEEE
Confidence 49999999999999999999999999999999321 1244455 799999999999
Q ss_pred eeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCC
Q 005506 102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS 181 (693)
Q Consensus 102 ~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~ 181 (693)
++. ..+++++.|.+|++||+.... .+..+. -...+.++..+| ..++|++|+.|..|++||.|++.
T Consensus 269 ~d~---~v~yS~SwDHTIk~WDletg~----------~~~~~~-~~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~ 333 (423)
T KOG0313|consen 269 SDA---TVIYSVSWDHTIKVWDLETGG----------LKSTLT-TNKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGD 333 (423)
T ss_pred cCC---CceEeecccceEEEEEeeccc----------ceeeee-cCcceeEeeccc-ccceeeecCCCCceeecCCCCCC
Confidence 985 689999999999999999752 233333 356789999999 77899999999999999999874
Q ss_pred CCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC-CCcccccCCCC
Q 005506 182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSP 260 (693)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~-~~~~~~~~~~~ 260 (693)
.. .......+|...|.++.|+|.+..+|++|+.|+++++||+|+.+ ++..+
T Consensus 334 gs----------------------~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI------ 385 (423)
T KOG0313|consen 334 GS----------------------VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI------ 385 (423)
T ss_pred Cc----------------------eeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee------
Confidence 21 12223346788999999999999999999999999999999765 33222
Q ss_pred CCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECC
Q 005506 261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 309 (693)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~ 309 (693)
.+|.. .|.++.|+. +..|++|+.|.+|+++.-.
T Consensus 386 --------------~~h~D-Kvl~vdW~~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 386 --------------AGHND-KVLSVDWNE-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred --------------ccCCc-eEEEEeccC-CceEEeccCcceEEEeccc
Confidence 34544 699999974 5579999999999998654
No 65
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.89 E-value=1e-21 Score=188.42 Aligned_cols=238 Identities=18% Similarity=0.261 Sum_probs=187.1
Q ss_pred hcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeC-
Q 005506 37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG- 115 (693)
Q Consensus 37 i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~- 115 (693)
.-.++.+.++.||++.|+|+..+.+.+.|+||+.|.+++|||+.+|+++..+. ...+|..+.|++. |++++.+..
T Consensus 39 s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k--~~~~Vk~~~F~~~--gn~~l~~tD~ 114 (327)
T KOG0643|consen 39 SLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK--TNSPVKRVDFSFG--GNLILASTDK 114 (327)
T ss_pred ecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee--cCCeeEEEeeccC--CcEEEEEehh
Confidence 44677789999999999999999999999999999999999999999999884 5678999999998 566666543
Q ss_pred ----CCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCc
Q 005506 116 ----DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ 191 (693)
Q Consensus 116 ----Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~ 191 (693)
.+.|.++|++..+.. ....+|...+..+.+.++..-|.| .+.+|++|.+||.|.+||++++...
T Consensus 115 ~mg~~~~v~~fdi~~~~~~---~~s~ep~~kI~t~~skit~a~Wg~-l~~~ii~Ghe~G~is~~da~~g~~~-------- 182 (327)
T KOG0643|consen 115 QMGYTCFVSVFDIRDDSSD---IDSEEPYLKIPTPDSKITSALWGP-LGETIIAGHEDGSISIYDARTGKEL-------- 182 (327)
T ss_pred hcCcceEEEEEEccCChhh---hcccCceEEecCCccceeeeeecc-cCCEEEEecCCCcEEEEEcccCcee--------
Confidence 467999999864321 112356788888999999999999 6788999999999999999987522
Q ss_pred ccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccC-
Q 005506 192 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM- 270 (693)
Q Consensus 192 ~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~- 270 (693)
+.....|...|+.+.++|+ ..++++|+.|.+.++||.+++..+.++.... |..+... .|.
T Consensus 183 ----------------v~s~~~h~~~Ind~q~s~d-~T~FiT~s~Dttakl~D~~tl~v~Kty~te~-PvN~aai-sP~~ 243 (327)
T KOG0643|consen 183 ----------------VDSDEEHSSKINDLQFSRD-RTYFITGSKDTTAKLVDVRTLEVLKTYTTER-PVNTAAI-SPLL 243 (327)
T ss_pred ----------------eechhhhccccccccccCC-cceEEecccCccceeeeccceeeEEEeeecc-cccceec-cccc
Confidence 2222356678999999998 5899999999999999999988766553221 1111100 000
Q ss_pred -----------------------------c-------cccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCC
Q 005506 271 -----------------------------H-------LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 271 -----------------------------~-------~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~ 310 (693)
| ..-++|-+ +|++|+|+|+|+..++|+.||.|++.-+..
T Consensus 244 d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFG-PINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 244 DHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFG-PINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred ceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccccc-CcceeEECCCCcccccCCCCceEEEEEecc
Confidence 0 01146666 899999999999999999999999986654
No 66
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.89 E-value=3.3e-21 Score=199.98 Aligned_cols=251 Identities=14% Similarity=0.198 Sum_probs=178.5
Q ss_pred hcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcE-EE-EeccCCCcceEEEEEeeCCCCCEEEEEe
Q 005506 37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL-LH-SIETGHSANVFCTKFVPETSDELVVSGA 114 (693)
Q Consensus 37 i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~-~~-~l~~~h~~~I~sv~f~p~~~~~~l~sgs 114 (693)
+..+.....+.+|..+|+-..|+|.|.++|||...|+|+|||...... ++ ++ +...++|.++.|.+++ ..|++.+
T Consensus 46 i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef-~v~aG~I~Di~Wd~ds--~RI~avG 122 (603)
T KOG0318|consen 46 IDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEF-QVLAGPIKDISWDFDS--KRIAAVG 122 (603)
T ss_pred CCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeee-eecccccccceeCCCC--cEEEEEe
Confidence 455556777899999999999999999999999999999999865322 22 23 4455666666666663 3333333
Q ss_pred CC----CcEEEEEcCCCCCCCC-------------------------------CCCCCCCceeeccCCCCeEEEEEecCC
Q 005506 115 GD----AEVRLFNLSRFSGRGL-------------------------------DDNAITPSALYQCHTRRVKKLAVEVGN 159 (693)
Q Consensus 115 ~D----g~V~vwdl~~~~~~~~-------------------------------~~~~~~~~~~~~~h~~~V~~la~sp~~ 159 (693)
.- |.+.+||-.+..+... ...+.+...++..|+..|.++.|+| +
T Consensus 123 EGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysP-D 201 (603)
T KOG0318|consen 123 EGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSP-D 201 (603)
T ss_pred cCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECC-C
Confidence 21 2345555543222110 1112244456677999999999999 6
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCc
Q 005506 160 PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF 239 (693)
Q Consensus 160 ~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~ 239 (693)
+..|+|++.||+|.+||-.+++.+ ..+.....|...|..++|+|+ +..+++++.|.+
T Consensus 202 G~~Fat~gsDgki~iyDGktge~v----------------------g~l~~~~aHkGsIfalsWsPD-s~~~~T~SaDkt 258 (603)
T KOG0318|consen 202 GSRFATAGSDGKIYIYDGKTGEKV----------------------GELEDSDAHKGSIFALSWSPD-STQFLTVSADKT 258 (603)
T ss_pred CCeEEEecCCccEEEEcCCCccEE----------------------EEecCCCCccccEEEEEECCC-CceEEEecCCce
Confidence 899999999999999998887632 123334578899999999998 789999999999
Q ss_pred EEEEecCCCCCCcccccCCC-------------------CCCcccccccCccc----cCCCCccceEEEEEcCCCCEEEE
Q 005506 240 ARLYDRRMLPPLTSCQKRMS-------------------PPPCVNYFCPMHLS----EHGRSSLHLTHVTFSPNGEEVLL 296 (693)
Q Consensus 240 IriwD~r~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~----~~~~~~~~V~~v~fspdg~~L~s 296 (693)
++|||..+.+.+.++..... ....+.++.+.+.. ..||.. .|++++.+|++++|++
T Consensus 259 ~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK-~ITaLtv~~d~~~i~S 337 (603)
T KOG0318|consen 259 IKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNK-SITALTVSPDGKTIYS 337 (603)
T ss_pred EEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheeccccc-ceeEEEEcCCCCEEEe
Confidence 99999998887666543322 01111222222211 145665 6999999999999999
Q ss_pred EecCCcEEEEECCCCCcce
Q 005506 297 SYSGEHVYLMDVNHAGGRA 315 (693)
Q Consensus 297 gs~Dg~V~lwdl~~~~~~~ 315 (693)
|+.||.|.-||+.++....
T Consensus 338 gsyDG~I~~W~~~~g~~~~ 356 (603)
T KOG0318|consen 338 GSYDGHINSWDSGSGTSDR 356 (603)
T ss_pred eccCceEEEEecCCccccc
Confidence 9999999999999976443
No 67
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=8.6e-22 Score=186.72 Aligned_cols=236 Identities=17% Similarity=0.194 Sum_probs=182.3
Q ss_pred cCcccccchhhhcc-cceeEEeccCCCcEEEEEECC--CCCEEEEEeCCCcEEEEECCCCcEE--EEeccCCCcceEEEE
Q 005506 26 VNHSLQMHSSLVRR-LSQERELEGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSRKLL--HSIETGHSANVFCTK 100 (693)
Q Consensus 26 ~~~~l~~~~~~i~~-l~~~~~l~gH~~~V~~l~~s~--~g~~LaSgs~Dg~I~IWd~~~~~~~--~~l~~~h~~~I~sv~ 100 (693)
.+..++++..--.. .+++.+|+||.++|..++|.. .|.+|||++.||+|.||....++.. ... ..|.+.|++|+
T Consensus 31 SD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~-~~h~~SVNsV~ 109 (299)
T KOG1332|consen 31 SDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEH-AAHSASVNSVA 109 (299)
T ss_pred CCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhh-hhhcccceeec
Confidence 44556655432222 378999999999999999987 7999999999999999998877432 333 67999999999
Q ss_pred EeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCC-------------CcEEEEEe
Q 005506 101 FVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-------------PHVVWSAS 167 (693)
Q Consensus 101 f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~-------------~~~l~Sgs 167 (693)
|.|...|-+|+.++.||.|.|.+.+...+ ....+...+|...|++++|.|.. .+.|+||+
T Consensus 110 wapheygl~LacasSDG~vsvl~~~~~g~-------w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgG 182 (299)
T KOG1332|consen 110 WAPHEYGLLLACASSDGKVSVLTYDSSGG-------WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGG 182 (299)
T ss_pred ccccccceEEEEeeCCCcEEEEEEcCCCC-------ccchhhhhccccccceeeecCcCCCccccccCcccccceeeccC
Confidence 99998788999999999999999986422 24456778999999999999841 15699999
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCC---cEEEEEeCCCcEEEEe
Q 005506 168 EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRP---HLLLVGGSDAFARLYD 244 (693)
Q Consensus 168 ~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~---~~Latgs~Dg~IriwD 244 (693)
.|..|+||+....+-. .-....+|...|+.++|.|.-+ .+||+++.||.|.||-
T Consensus 183 cDn~VkiW~~~~~~w~-----------------------~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt 239 (299)
T KOG1332|consen 183 CDNLVKIWKFDSDSWK-----------------------LERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWT 239 (299)
T ss_pred CccceeeeecCCcchh-----------------------hhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEE
Confidence 9999999998775311 1112447888999999999643 5899999999999998
Q ss_pred cCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCC
Q 005506 245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 245 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~ 310 (693)
.+.. ...+.. ..+..| ...+..+.||+.|..|+++++|+.|.+|.-+.
T Consensus 240 ~~~e--~e~wk~-----tll~~f-----------~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 240 KDEE--YEPWKK-----TLLEEF-----------PDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred ecCc--cCcccc-----cccccC-----------CcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 7732 111110 111111 12589999999999999999999999997654
No 68
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.3e-21 Score=209.22 Aligned_cols=247 Identities=15% Similarity=0.192 Sum_probs=198.0
Q ss_pred ccccchhhhcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCC
Q 005506 29 SLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE 108 (693)
Q Consensus 29 ~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~ 108 (693)
.+-+|.........+..+. ...|+++.|+++|.+||+|..+|.|.|||..+.+.+..+...|...|-+++|.. .
T Consensus 198 ~vylW~~~s~~v~~l~~~~--~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~----~ 271 (484)
T KOG0305|consen 198 SVYLWSASSGSVTELCSFG--EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNS----S 271 (484)
T ss_pred eEEEEecCCCceEEeEecC--CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccC----c
Confidence 4445554444444444443 889999999999999999999999999999999999999444999999999983 5
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCC
Q 005506 109 LVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS 188 (693)
Q Consensus 109 ~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~ 188 (693)
.+.+|+.|+.|.++|++... ....++.+|...|..++|++ ++.+|++|+.|+.|.|||.....+.
T Consensus 272 ~lssGsr~~~I~~~dvR~~~---------~~~~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~----- 336 (484)
T KOG0305|consen 272 VLSSGSRDGKILNHDVRISQ---------HVVSTLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPK----- 336 (484)
T ss_pred eEEEecCCCcEEEEEEecch---------hhhhhhhcccceeeeeEECC-CCCeeccCCCccceEeccCCCcccc-----
Confidence 89999999999999999753 22334889999999999999 7799999999999999999554422
Q ss_pred CCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEe--CCCcEEEEecCCCCCCcccccCCCCCCcccc
Q 005506 189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG--SDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266 (693)
Q Consensus 189 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs--~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~ 266 (693)
.....|...|+.++|+|....+||+|+ .|+.|++||..++..+...
T Consensus 337 --------------------~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v------------ 384 (484)
T KOG0305|consen 337 --------------------FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV------------ 384 (484)
T ss_pred --------------------EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc------------
Confidence 222367889999999999999999976 5999999999987655332
Q ss_pred cccCccccCCCCccceEEEEEcCCCCEEEEEec--CCcEEEEECCCCCcceEEeecCCCceeEEeccCCCcccc
Q 005506 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS--GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLEL 338 (693)
Q Consensus 267 ~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~--Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~ 338 (693)
..+..|.+|.|++..+.|+++.+ ++.|.||+..+......+..|...+-.++++|+...+..
T Consensus 385 ----------dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t 448 (484)
T KOG0305|consen 385 ----------DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVT 448 (484)
T ss_pred ----------ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEE
Confidence 22336999999999999887765 789999999997666666666666667788888555433
No 69
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.88 E-value=1.7e-21 Score=218.33 Aligned_cols=235 Identities=20% Similarity=0.324 Sum_probs=180.6
Q ss_pred ceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC------------------CcEEEEeccCCCcceEEEEEe
Q 005506 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS------------------RKLLHSIETGHSANVFCTKFV 102 (693)
Q Consensus 41 ~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~------------------~~~~~~l~~~h~~~I~sv~f~ 102 (693)
+++-++..|.++|+|+.|++||++||+||+|+.|.||.... .+++..+ .+|.+.|..++|+
T Consensus 60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l-~~H~~DV~Dv~Ws 138 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSIL-RGHDSDVLDVNWS 138 (942)
T ss_pred hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEE-ecCCCccceeccC
Confidence 34556778999999999999999999999999999999872 1345555 7999999999999
Q ss_pred eCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCC
Q 005506 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (693)
Q Consensus 103 p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~ 182 (693)
|+ +.+|++++.|++|.||+..+. +.+..+.+|.+.|+.+.|.| -+++|+|-+.|++|++|.+.....
T Consensus 139 p~--~~~lvS~s~DnsViiwn~~tF----------~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i 205 (942)
T KOG0973|consen 139 PD--DSLLVSVSLDNSVIIWNAKTF----------ELLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGI 205 (942)
T ss_pred CC--ccEEEEecccceEEEEccccc----------eeeeeeecccccccceEECC-ccCeeeeecCCceEEEEEccccee
Confidence 98 799999999999999999976 56889999999999999999 779999999999999999665321
Q ss_pred CCCCCCCC---------------ccc--------------ceEEEeccCCceeeecCCCCCccceEEEEEcCC-------
Q 005506 183 CPPAGSSH---------------QEC--------------RNILLDLRCGAKRSLADPPKQTLSLKSCDISST------- 226 (693)
Q Consensus 183 ~~~~~~~~---------------~~~--------------~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~------- 226 (693)
...+...- .++ ...|++ .+....-...-+|..++.++.|+|.
T Consensus 206 ~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Iie--R~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ 283 (942)
T KOG0973|consen 206 EKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIE--RGTWKVDKDLVGHSAPVEVVRFNPKLFERNNK 283 (942)
T ss_pred eEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEe--cCCceeeeeeecCCCceEEEEeChHHhccccc
Confidence 10000000 000 001111 1222223344578889999999982
Q ss_pred -----CCc----EEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEE
Q 005506 227 -----RPH----LLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS 297 (693)
Q Consensus 227 -----~~~----~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sg 297 (693)
+++ .+|+|+.|++|-||.....+|+..+. + -.+..|..++|+|||..|+++
T Consensus 284 ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~---------~-----------lf~~SI~DmsWspdG~~Lfac 343 (942)
T KOG0973|consen 284 NGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIH---------N-----------LFNKSIVDMSWSPDGFSLFAC 343 (942)
T ss_pred cCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhh---------h-----------hhcCceeeeeEcCCCCeEEEE
Confidence 122 78999999999999987665543221 1 112369999999999999999
Q ss_pred ecCCcEEEEECCCC
Q 005506 298 YSGEHVYLMDVNHA 311 (693)
Q Consensus 298 s~Dg~V~lwdl~~~ 311 (693)
+.||+|.++.+...
T Consensus 344 S~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 344 SLDGTVALIHFEEK 357 (942)
T ss_pred ecCCeEEEEEcchH
Confidence 99999999999874
No 70
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=2.5e-21 Score=189.79 Aligned_cols=236 Identities=19% Similarity=0.300 Sum_probs=178.0
Q ss_pred hcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCC
Q 005506 37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD 116 (693)
Q Consensus 37 i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~D 116 (693)
.-.+.++..+..|.++|++++.+ |.++||||.|-+|+|||+.+.+.+..+ ..|.+.|+++.|.+...-..|++|+.|
T Consensus 30 ~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~l-l~HagsitaL~F~~~~S~shLlS~sdD 106 (362)
T KOG0294|consen 30 KPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGIL-LSHAGSITALKFYPPLSKSHLLSGSDD 106 (362)
T ss_pred ceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcce-eccccceEEEEecCCcchhheeeecCC
Confidence 34466678889999999999985 889999999999999999999888888 689999999999987533489999999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceE
Q 005506 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (693)
Q Consensus 117 g~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~ 196 (693)
|.|.+|+... +..+..+++|...|+.|+++| .+.+-++.+.|+.++.|++-.++........ .....+
T Consensus 107 G~i~iw~~~~----------W~~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~-~~at~v 174 (362)
T KOG0294|consen 107 GHIIIWRVGS----------WELLKSLKAHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLNLK-NKATLV 174 (362)
T ss_pred CcEEEEEcCC----------eEEeeeecccccccceeEecC-CCceEEEEcCCceeeeehhhcCccceeeccC-Ccceee
Confidence 9999999985 377899999999999999999 7788889999999999999877632111111 111123
Q ss_pred EEeccCCceeeec----------------CCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCC
Q 005506 197 LLDLRCGAKRSLA----------------DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP 260 (693)
Q Consensus 197 l~~~~~~~~~~l~----------------~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~ 260 (693)
.|... |....+. ..-.....+.|+.|-. +..|++|+.|+.|++||..+..+...+
T Consensus 175 ~w~~~-Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~--~~~L~vG~d~~~i~~~D~ds~~~~~~~------ 245 (362)
T KOG0294|consen 175 SWSPQ-GDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLD--GSELLVGGDNEWISLKDTDSDTPLTEF------ 245 (362)
T ss_pred EEcCC-CCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecC--CceEEEecCCceEEEeccCCCccceee------
Confidence 33211 1100000 0000112355565554 579999999999999999876544332
Q ss_pred CCcccccccCccccCCCCccceEEEEE--cCCCCEEEEEecCCcEEEEECCCC
Q 005506 261 PPCVNYFCPMHLSEHGRSSLHLTHVTF--SPNGEEVLLSYSGEHVYLMDVNHA 311 (693)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~V~~v~f--spdg~~L~sgs~Dg~V~lwdl~~~ 311 (693)
.+|.+ .|..+.+ .|++.+|++++.||.|++||+...
T Consensus 246 --------------~AH~~-RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 246 --------------LAHEN-RVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred --------------ecchh-heeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 34555 5777774 478899999999999999999884
No 71
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.88 E-value=3.9e-22 Score=214.25 Aligned_cols=223 Identities=17% Similarity=0.280 Sum_probs=183.8
Q ss_pred cccccchh--hhcccceeEEeccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEECCCCcE---EEE-----eccCCCcce
Q 005506 28 HSLQMHSS--LVRRLSQERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKL---LHS-----IETGHSANV 96 (693)
Q Consensus 28 ~~l~~~~~--~i~~l~~~~~l~gH~~~V~~l~~s~~g-~~LaSgs~Dg~I~IWd~~~~~~---~~~-----l~~~h~~~I 96 (693)
+++.+|+. --...-+.+...||++.|.+++++..+ .+|+++|.|+++++|++...+. ... ....|...|
T Consensus 387 ~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdI 466 (775)
T KOG0319|consen 387 KSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDI 466 (775)
T ss_pred ceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccc
Confidence 44445532 233445566778999999999997754 6999999999999999976221 111 124799999
Q ss_pred EEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 005506 97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD 176 (693)
Q Consensus 97 ~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwD 176 (693)
.||+.+|+ +.+|+||+.|.+.+||++... ....++.+|+..|.++.|+| ..++++|+|.|++|+||.
T Consensus 467 N~Vaia~n--dkLiAT~SqDktaKiW~le~~----------~l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~ 533 (775)
T KOG0319|consen 467 NCVAIAPN--DKLIATGSQDKTAKIWDLEQL----------RLLGVLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWS 533 (775)
T ss_pred cceEecCC--CceEEecccccceeeecccCc----------eEEEEeeCCccceEEEEecc-ccceeEeccCCceEEEEE
Confidence 99999999 799999999999999999943 56889999999999999999 668999999999999999
Q ss_pred CCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCccccc
Q 005506 177 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK 256 (693)
Q Consensus 177 lr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~ 256 (693)
+.+.. .+....+|...|..+.|-.+ +..|++++.||-|++|++.+.
T Consensus 534 is~fS-------------------------ClkT~eGH~~aVlra~F~~~-~~qliS~~adGliKlWnikt~-------- 579 (775)
T KOG0319|consen 534 ISTFS-------------------------CLKTFEGHTSAVLRASFIRN-GKQLISAGADGLIKLWNIKTN-------- 579 (775)
T ss_pred eccce-------------------------eeeeecCccceeEeeeeeeC-CcEEEeccCCCcEEEEeccch--------
Confidence 98865 23344578889999999886 789999999999999999986
Q ss_pred CCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCC
Q 005506 257 RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~ 310 (693)
.|+.++ ..|.+ .|+.++-+|.+.++++|++||.|.+|.=.+
T Consensus 580 -----eC~~tl-------D~H~D-rvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 580 -----ECEMTL-------DAHND-RVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred -----hhhhhh-------hhccc-eeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 455555 56776 699999999999999999999999996554
No 72
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=5.9e-22 Score=199.83 Aligned_cols=238 Identities=16% Similarity=0.189 Sum_probs=178.3
Q ss_pred cccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 005506 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (693)
Q Consensus 38 ~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg 117 (693)
..+++.++|.||..+|..|.||||.++|++|+.|..+.+||+.+|.+.+.+..+|...+.+++|.|+ +..+++|+.|+
T Consensus 257 ~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pD--g~~~V~Gs~dr 334 (519)
T KOG0293|consen 257 VHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPD--GFRFVTGSPDR 334 (519)
T ss_pred cceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccC--CceeEecCCCC
Confidence 3488899999999999999999999999999999999999999999999887777889999999999 68999999999
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCceeeccC-CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCC--------
Q 005506 118 EVRLFNLSRFSGRGLDDNAITPSALYQCH-TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS-------- 188 (693)
Q Consensus 118 ~V~vwdl~~~~~~~~~~~~~~~~~~~~~h-~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~-------- 188 (693)
+|..||+... ....+.+- ...|.++++++ ++..+++.+.|..|++++..+......+..
T Consensus 335 ~i~~wdlDgn-----------~~~~W~gvr~~~v~dlait~-Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~ 402 (519)
T KOG0293|consen 335 TIIMWDLDGN-----------ILGNWEGVRDPKVHDLAITY-DGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFS 402 (519)
T ss_pred cEEEecCCcc-----------hhhcccccccceeEEEEEcC-CCcEEEEEecccceeeechhhhhhhccccccCceeEEE
Confidence 9999999853 23333332 25699999999 667777888999999999865432211100
Q ss_pred CCccc----------ceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCC
Q 005506 189 SHQEC----------RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRM 258 (693)
Q Consensus 189 ~~~~~----------~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~ 258 (693)
...+. ...+|++.......-.........+..-+|-.-+..++++|+.|+.|+||++.+++++..+
T Consensus 403 iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~L---- 478 (519)
T KOG0293|consen 403 ISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVL---- 478 (519)
T ss_pred EcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEee----
Confidence 01111 1335555533222111112222334444565555579999999999999999998776544
Q ss_pred CCCCcccccccCccccCCCCccceEEEEEcCCCC-EEEEEecCCcEEEEECCC
Q 005506 259 SPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~-~L~sgs~Dg~V~lwdl~~ 310 (693)
.||.. .|++|+|+|... ++++++.||+|+||-...
T Consensus 479 ----------------sGHs~-~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 479 ----------------SGHSK-TVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ----------------cCCcc-eeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 44554 599999999665 677888899999998765
No 73
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.88 E-value=4.9e-21 Score=183.71 Aligned_cols=237 Identities=20% Similarity=0.332 Sum_probs=189.6
Q ss_pred EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEc
Q 005506 45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124 (693)
Q Consensus 45 ~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl 124 (693)
.|+||..+++.|.++.+|.+|.|++.|.++.||-...|+.+.++ .||.+.|+|+...-++ ..++||+.|.++++||+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty-~GHtGavW~~Did~~s--~~liTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTY-DGHTGAVWCCDIDWDS--KHLITGSADQTAKLWDV 81 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeee-cCCCceEEEEEecCCc--ceeeeccccceeEEEEc
Confidence 47899999999999999999999999999999998899999999 7999999999998884 89999999999999999
Q ss_pred CCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeC-----CCcEEEEeCCCCCCCCCCCCCCcccceEEEe
Q 005506 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-----DGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (693)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~-----Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~ 199 (693)
.++ +.+..+. -...|+.+.|++ ++++++.+.. .+.|.++|++..... ....++
T Consensus 82 ~tG----------k~la~~k-~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~----~~s~ep------ 139 (327)
T KOG0643|consen 82 ETG----------KQLATWK-TNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSD----IDSEEP------ 139 (327)
T ss_pred CCC----------cEEEEee-cCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhh----hcccCc------
Confidence 976 4456665 567899999999 6666665543 467999999865321 001111
Q ss_pred ccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCc
Q 005506 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (693)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (693)
+...+.+...++.+-|.|. +..|++|..||.|.+||.+++..+... ...|..
T Consensus 140 --------~~kI~t~~skit~a~Wg~l-~~~ii~Ghe~G~is~~da~~g~~~v~s-------------------~~~h~~ 191 (327)
T KOG0643|consen 140 --------YLKIPTPDSKITSALWGPL-GETIIAGHEDGSISIYDARTGKELVDS-------------------DEEHSS 191 (327)
T ss_pred --------eEEecCCccceeeeeeccc-CCEEEEecCCCcEEEEEcccCceeeec-------------------hhhhcc
Confidence 1111223467899999997 789999999999999999987532111 012333
Q ss_pred cceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCcc
Q 005506 280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGL 336 (693)
Q Consensus 280 ~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~g~ 336 (693)
.|+.+.|+||..++++++.|.+-++||+.+.. ....|....|++..+++|..+.+
T Consensus 192 -~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~-v~Kty~te~PvN~aaisP~~d~V 246 (327)
T KOG0643|consen 192 -KINDLQFSRDRTYFITGSKDTTAKLVDVRTLE-VLKTYTTERPVNTAAISPLLDHV 246 (327)
T ss_pred -ccccccccCCcceEEecccCccceeeecccee-eEEEeeecccccceecccccceE
Confidence 69999999999999999999999999999954 66677788899988888875543
No 74
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.88 E-value=2.8e-21 Score=196.24 Aligned_cols=213 Identities=19% Similarity=0.244 Sum_probs=178.2
Q ss_pred cccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 005506 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (693)
Q Consensus 38 ~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg 117 (693)
..-+.+.+|+||+..|+.+.++++...+++++.|..|+||..........+ ..|..+|+.+..+|+ |.+|++++.|+
T Consensus 249 ~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~-~~h~~~V~~ls~h~t--geYllsAs~d~ 325 (506)
T KOG0289|consen 249 PSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS-RPHEEPVTGLSLHPT--GEYLLSASNDG 325 (506)
T ss_pred chhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc-ccccccceeeeeccC--CcEEEEecCCc
Confidence 445567789999999999999999999999999999999999877766666 689999999999999 79999999999
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCceeec--cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccce
Q 005506 118 EVRLFNLSRFSGRGLDDNAITPSALYQ--CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (693)
Q Consensus 118 ~V~vwdl~~~~~~~~~~~~~~~~~~~~--~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~ 195 (693)
+..+.|++.+. .+.... ...-.+++.+||| ++.+|.+|..||.|++||+.++.
T Consensus 326 ~w~Fsd~~~g~----------~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~-------------- 380 (506)
T KOG0289|consen 326 TWAFSDISSGS----------QLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQT-------------- 380 (506)
T ss_pred eEEEEEccCCc----------EEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCcc--------------
Confidence 99999999652 122222 1224589999999 78999999999999999998765
Q ss_pred EEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccC
Q 005506 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (693)
Q Consensus 196 ~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (693)
.+..+++|..+|+.++|+.+ |.+||+++.|+.|++||+|..+.+.++...
T Consensus 381 -----------~~a~Fpght~~vk~i~FsEN-GY~Lat~add~~V~lwDLRKl~n~kt~~l~------------------ 430 (506)
T KOG0289|consen 381 -----------NVAKFPGHTGPVKAISFSEN-GYWLATAADDGSVKLWDLRKLKNFKTIQLD------------------ 430 (506)
T ss_pred -----------ccccCCCCCCceeEEEeccC-ceEEEEEecCCeEEEEEehhhcccceeecc------------------
Confidence 24556779999999999996 899999999999999999988765544221
Q ss_pred CCCccceEEEEEcCCCCEEEEEecCCcEEEEECCC
Q 005506 276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 276 ~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~ 310 (693)
....|.++.|.+.|.+|+.++.|=+||+++-.+
T Consensus 431 --~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~ 463 (506)
T KOG0289|consen 431 --EKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT 463 (506)
T ss_pred --ccccceeEEEcCCCCeEEeecceeEEEEEeccc
Confidence 112589999999999999998888888888555
No 75
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=7.7e-22 Score=214.71 Aligned_cols=242 Identities=18% Similarity=0.246 Sum_probs=189.7
Q ss_pred EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEc
Q 005506 45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124 (693)
Q Consensus 45 ~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl 124 (693)
.++..+..|..|+|+|.-.+++++--.|.|++||+.=+.++..| ..|.++|..|.|+|. ..+|++|+.|-+|+||+.
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rF-deHdGpVRgv~FH~~--qplFVSGGDDykIkVWnY 80 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVDFHPT--QPLFVSGGDDYKIKVWNY 80 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhh-hccCCccceeeecCC--CCeEEecCCccEEEEEec
Confidence 35666788999999999999999999999999999988899998 799999999999999 589999999999999999
Q ss_pred CCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCc
Q 005506 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (693)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (693)
... +++.++.+|.+.|..+.|++. --+|+|+|.|.+||||+..+.+.
T Consensus 81 k~r----------rclftL~GHlDYVRt~~FHhe-yPWIlSASDDQTIrIWNwqsr~~---------------------- 127 (1202)
T KOG0292|consen 81 KTR----------RCLFTLLGHLDYVRTVFFHHE-YPWILSASDDQTIRIWNWQSRKC---------------------- 127 (1202)
T ss_pred ccc----------eehhhhccccceeEEeeccCC-CceEEEccCCCeEEEEeccCCce----------------------
Confidence 865 678999999999999999994 45778999999999999987652
Q ss_pred eeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCccccc----CC-----------CCCCccccccc
Q 005506 205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK----RM-----------SPPPCVNYFCP 269 (693)
Q Consensus 205 ~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~----~~-----------~~~~~~~~~~~ 269 (693)
+....+|...|.|..|+|. ..++++++.|.+||+||+.-++.-..-+. .+ .+...++...
T Consensus 128 ---iavltGHnHYVMcAqFhpt-EDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VL- 202 (1202)
T KOG0292|consen 128 ---IAVLTGHNHYVMCAQFHPT-EDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVL- 202 (1202)
T ss_pred ---EEEEecCceEEEeeccCCc-cceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeee-
Confidence 2233467889999999997 57999999999999999875432111110 00 0011111111
Q ss_pred CccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCC--cceEEeecCCCceeEEeccCC
Q 005506 270 MHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG--GRAMRYTVGDASKIMSFTPTL 333 (693)
Q Consensus 270 ~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~--~~~~~~~~~~~~~~~~~~p~~ 333 (693)
.||.- .|+-++|+|.-..|++|+.|..|++|.++..+ ..-....|-.++..+-|+|..
T Consensus 203 -----EGHDR-GVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q 262 (1202)
T KOG0292|consen 203 -----EGHDR-GVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQ 262 (1202)
T ss_pred -----ccccc-ccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCcc
Confidence 34554 59999999999999999999999999998743 122233444455556666643
No 76
>PTZ00421 coronin; Provisional
Probab=99.88 E-value=8.6e-21 Score=209.88 Aligned_cols=217 Identities=15% Similarity=0.118 Sum_probs=161.9
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEE-------------EeccCCCcceEEEEEeeCCCCCEEEEEeC
Q 005506 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH-------------SIETGHSANVFCTKFVPETSDELVVSGAG 115 (693)
Q Consensus 49 H~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~-------------~l~~~h~~~I~sv~f~p~~~~~~l~sgs~ 115 (693)
|-..|+....++++..+++++.+..+..|+...+..+. .+ .+|.+.|++++|+|.. +++|++|+.
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l-~GH~~~V~~v~fsP~d-~~~LaSgS~ 96 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPIL-LGQEGPIIDVAFNPFD-PQKLFTASE 96 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceE-eCCCCCEEEEEEcCCC-CCEEEEEeC
Confidence 33456666667777777888888888888865443221 23 6899999999999942 689999999
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccce
Q 005506 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (693)
Q Consensus 116 Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~ 195 (693)
|++|++||+...... .....++..+.+|...|.+++|+|...++|++++.|++|++||++++...
T Consensus 97 DgtIkIWdi~~~~~~---~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~------------ 161 (493)
T PTZ00421 97 DGTIMGWGIPEEGLT---QNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAV------------ 161 (493)
T ss_pred CCEEEEEecCCCccc---cccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEE------------
Confidence 999999999753110 01124577889999999999999976789999999999999999875411
Q ss_pred EEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccC
Q 005506 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (693)
Q Consensus 196 ~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (693)
.....|...|.+++|+|+ +.+|++|+.|+.|++||+++++.+..+ .
T Consensus 162 -------------~~l~~h~~~V~sla~spd-G~lLatgs~Dg~IrIwD~rsg~~v~tl--------------------~ 207 (493)
T PTZ00421 162 -------------EVIKCHSDQITSLEWNLD-GSLLCTTSKDKKLNIIDPRDGTIVSSV--------------------E 207 (493)
T ss_pred -------------EEEcCCCCceEEEEEECC-CCEEEEecCCCEEEEEECCCCcEEEEE--------------------e
Confidence 111245668999999997 789999999999999999986533222 2
Q ss_pred CCCccceEEEEEcCCCCEEEEEe----cCCcEEEEECCCCCcceE
Q 005506 276 GRSSLHLTHVTFSPNGEEVLLSY----SGEHVYLMDVNHAGGRAM 316 (693)
Q Consensus 276 ~~~~~~V~~v~fspdg~~L~sgs----~Dg~V~lwdl~~~~~~~~ 316 (693)
+|....+..+.|.+++..|++++ .|+.|++||+++...+..
T Consensus 208 ~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~ 252 (493)
T PTZ00421 208 AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYS 252 (493)
T ss_pred cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCcee
Confidence 23332356788999988887665 378999999998654433
No 77
>PTZ00420 coronin; Provisional
Probab=99.88 E-value=1.2e-20 Score=209.84 Aligned_cols=200 Identities=14% Similarity=0.174 Sum_probs=151.6
Q ss_pred EeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCC
Q 005506 68 GSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHT 147 (693)
Q Consensus 68 gs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~ 147 (693)
|+.++.|++|+......+..+ .+|.+.|.+++|+|.. +.+|+||+.|++|+|||+....... .....++..+.+|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L-~gH~~~V~~lafsP~~-~~lLASgS~DgtIrIWDi~t~~~~~--~~i~~p~~~L~gH~ 125 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKL-KGHTSSILDLQFNPCF-SEILASGSEDLTIRVWEIPHNDESV--KEIKDPQCILKGHK 125 (568)
T ss_pred CCceeEEEeeecCCCceEEEE-cCCCCCEEEEEEcCCC-CCEEEEEeCCCeEEEEECCCCCccc--cccccceEEeecCC
Confidence 677899999999887777777 7999999999999974 5899999999999999997532100 00013456778999
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCC
Q 005506 148 RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR 227 (693)
Q Consensus 148 ~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~ 227 (693)
..|.+++|+|.+..+|++++.||+|++||++++... .. + .+...|.+++|+|+
T Consensus 126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~--------------~~--------i----~~~~~V~Slswspd- 178 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRA--------------FQ--------I----NMPKKLSSLKWNIK- 178 (568)
T ss_pred CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEE--------------EE--------E----ecCCcEEEEEECCC-
Confidence 999999999977677889999999999999876421 10 1 11246899999997
Q ss_pred CcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCc----cceEEEEEcCCCCEEEEEecCC--
Q 005506 228 PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS----LHLTHVTFSPNGEEVLLSYSGE-- 301 (693)
Q Consensus 228 ~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~V~~v~fspdg~~L~sgs~Dg-- 301 (693)
+.+|++++.|+.|+|||+++++.+..+ .+|.+ ..+....|++++.+|++++.|+
T Consensus 179 G~lLat~s~D~~IrIwD~Rsg~~i~tl--------------------~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~ 238 (568)
T PTZ00420 179 GNLLSGTCVGKHMHIIDPRKQEIASSF--------------------HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNN 238 (568)
T ss_pred CCEEEEEecCCEEEEEECCCCcEEEEE--------------------ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCC
Confidence 789999999999999999987543322 12222 1234456779999999988764
Q ss_pred --cEEEEECCCCCcceEEe
Q 005506 302 --HVYLMDVNHAGGRAMRY 318 (693)
Q Consensus 302 --~V~lwdl~~~~~~~~~~ 318 (693)
+|+|||+++...+....
T Consensus 239 ~R~VkLWDlr~~~~pl~~~ 257 (568)
T PTZ00420 239 MREMKLWDLKNTTSALVTM 257 (568)
T ss_pred ccEEEEEECCCCCCceEEE
Confidence 79999999755444443
No 78
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.88 E-value=3.9e-21 Score=212.97 Aligned_cols=227 Identities=26% Similarity=0.351 Sum_probs=183.6
Q ss_pred cCcccccchhhhcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCC
Q 005506 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105 (693)
Q Consensus 26 ~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~ 105 (693)
..+.++.|+ .+........|.||.+.|.++++..-+.+|++|+.|.+++|||..++.+.+++ .+|.+.|.++...+.
T Consensus 226 ~~~tl~~~~-~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l-~gh~stv~~~~~~~~- 302 (537)
T KOG0274|consen 226 DDSTLHLWD-LNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSL-QGHTSSVRCLTIDPF- 302 (537)
T ss_pred CCceeEEee-cccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEe-cCCCceEEEEEccCc-
Confidence 335555554 22333334449999999999999987889999999999999999999999999 799999999998765
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCC
Q 005506 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP 185 (693)
Q Consensus 106 ~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~ 185 (693)
++++|+.|.+|++|++.++ ..+..+.+|...|+++..+ ..++++|+.||+|++||+++.+
T Consensus 303 ---~~~sgs~D~tVkVW~v~n~----------~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~---- 362 (537)
T KOG0274|consen 303 ---LLVSGSRDNTVKVWDVTNG----------ACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGK---- 362 (537)
T ss_pred ---eEeeccCCceEEEEeccCc----------ceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhce----
Confidence 7899999999999999965 5688888899999999996 5789999999999999999765
Q ss_pred CCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCccc
Q 005506 186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN 265 (693)
Q Consensus 186 ~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~ 265 (693)
.+....+|...|+++.+.+. ..+++|+.|+.|++||+++.. .|+.
T Consensus 363 ---------------------cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~------------~c~~ 407 (537)
T KOG0274|consen 363 ---------------------CLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKR------------KCIH 407 (537)
T ss_pred ---------------------eeeeecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchh------------hhhh
Confidence 23344468889999988873 699999999999999999862 2444
Q ss_pred ccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeec
Q 005506 266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV 320 (693)
Q Consensus 266 ~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~ 320 (693)
.+ .+|.. -|.. +...+++|++++.|++|++||..++++.......
T Consensus 408 tl-------~~h~~-~v~~--l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~ 452 (537)
T KOG0274|consen 408 TL-------QGHTS-LVSS--LLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGR 452 (537)
T ss_pred hh-------cCCcc-cccc--cccccceeEeccccccEEEeecccCceeeeeccC
Confidence 43 34444 2433 3446789999999999999999998877776653
No 79
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.5e-21 Score=190.78 Aligned_cols=249 Identities=20% Similarity=0.273 Sum_probs=199.9
Q ss_pred ccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 005506 39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 118 (693)
Q Consensus 39 ~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~ 118 (693)
...+.++|.||.+.|+.++.......+.++|.|.+.+||.+++++|+.++ .||.+.|.+|+|+|. +.+++|++.|++
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y-~GH~GSVNsikfh~s--~~L~lTaSGD~t 213 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATY-TGHTGSVNSIKFHNS--GLLLLTASGDET 213 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeee-cccccceeeEEeccc--cceEEEccCCcc
Confidence 45678889999999999999887779999999999999999999999999 899999999999998 799999999999
Q ss_pred EEEEEcC----CCCCCC-------------------------CCCCC-CCCceeeccCCCCeEEEEEecCCCcEEEEEeC
Q 005506 119 VRLFNLS----RFSGRG-------------------------LDDNA-ITPSALYQCHTRRVKKLAVEVGNPHVVWSASE 168 (693)
Q Consensus 119 V~vwdl~----~~~~~~-------------------------~~~~~-~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~ 168 (693)
-+||... .++... .+... --|+..+.+|...|.+..|.. ++..+++++.
T Consensus 214 aHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSW 292 (481)
T KOG0300|consen 214 AHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASW 292 (481)
T ss_pred hHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-Ccceeeeeec
Confidence 9999721 111000 00001 125667889999999999988 7888999999
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCC
Q 005506 169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML 248 (693)
Q Consensus 169 Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~ 248 (693)
|.+..+||+.++..+ ....+|...++.++-+|. .+++++.+.|.+.|+||.|..
T Consensus 293 DRTAnlwDVEtge~v-------------------------~~LtGHd~ELtHcstHpt-QrLVvTsSrDtTFRLWDFRea 346 (481)
T KOG0300|consen 293 DRTANLWDVETGEVV-------------------------NILTGHDSELTHCSTHPT-QRLVVTSSRDTTFRLWDFREA 346 (481)
T ss_pred cccceeeeeccCcee-------------------------ccccCcchhccccccCCc-ceEEEEeccCceeEeccchhh
Confidence 999999999998733 233466778888999997 589999999999999999832
Q ss_pred CCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEE
Q 005506 249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMS 328 (693)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~ 328 (693)
- ..+..| .||.. .|+++.|..+.+ +++|+.|.+|++||+++...+...+....+.+.++
T Consensus 347 I------------~sV~VF-------QGHtd-tVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRva 405 (481)
T KOG0300|consen 347 I------------QSVAVF-------QGHTD-TVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVA 405 (481)
T ss_pred c------------ceeeee-------ccccc-ceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeeecCCccceeE
Confidence 1 234444 67777 699999998765 78999999999999999887777777777777776
Q ss_pred eccCCCcccc
Q 005506 329 FTPTLNGLEL 338 (693)
Q Consensus 329 ~~p~~~g~~~ 338 (693)
.+...+-+++
T Consensus 406 vs~g~~iIAi 415 (481)
T KOG0300|consen 406 VSKGHPIIAI 415 (481)
T ss_pred eecCCceEEe
Confidence 6654444433
No 80
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.9e-21 Score=200.65 Aligned_cols=224 Identities=21% Similarity=0.347 Sum_probs=180.4
Q ss_pred CcCcccccchhhhcccceeEEeccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEee
Q 005506 25 DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103 (693)
Q Consensus 25 ~~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~-g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p 103 (693)
+....+++++ .++-..+..|++|+.+|..+.|+|. ++.|++|++|+.+++||+.+......+ .+|++-|.|.+|+|
T Consensus 87 D~sG~V~vfD--~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l-~~htDYVR~g~~~~ 163 (487)
T KOG0310|consen 87 DESGHVKVFD--MKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAEL-SGHTDYVRCGDISP 163 (487)
T ss_pred CCcCcEEEec--cccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEe-cCCcceeEeecccc
Confidence 3446667766 3444456678999999999999994 678889999999999999988875567 89999999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCC
Q 005506 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (693)
Q Consensus 104 ~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~ 183 (693)
.+ +++++||+.||+|++||++... ..+..+. |..+|.++.+-| ++.+|++++. ..|++||+-++...
T Consensus 164 ~~-~hivvtGsYDg~vrl~DtR~~~---------~~v~eln-hg~pVe~vl~lp-sgs~iasAgG-n~vkVWDl~~G~ql 230 (487)
T KOG0310|consen 164 AN-DHIVVTGSYDGKVRLWDTRSLT---------SRVVELN-HGCPVESVLALP-SGSLIASAGG-NSVKVWDLTTGGQL 230 (487)
T ss_pred CC-CeEEEecCCCceEEEEEeccCC---------ceeEEec-CCCceeeEEEcC-CCCEEEEcCC-CeEEEEEecCCcee
Confidence 86 7899999999999999999642 3355554 899999999999 7788888876 68999999866422
Q ss_pred CCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCc
Q 005506 184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC 263 (693)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~ 263 (693)
+.....|...|+|+.+..+ +..|++|+-|+.|++||+.+.+.+.++.
T Consensus 231 ------------------------l~~~~~H~KtVTcL~l~s~-~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-------- 277 (487)
T KOG0310|consen 231 ------------------------LTSMFNHNKTVTCLRLASD-STRLLSGSLDRHVKVFDTTNYKVVHSWK-------- 277 (487)
T ss_pred ------------------------hhhhhcccceEEEEEeecC-CceEeecccccceEEEEccceEEEEeee--------
Confidence 2222346778999999996 6899999999999999988766544331
Q ss_pred ccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCC
Q 005506 264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (693)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~ 311 (693)
-..+|.+++.+|+++.+++|..||.+.+=+....
T Consensus 278 --------------~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k 311 (487)
T KOG0310|consen 278 --------------YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVK 311 (487)
T ss_pred --------------cccceeeEEecCCCceEEEecccceeeeehhhcc
Confidence 1126999999999999999999998887755543
No 81
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.88 E-value=3e-21 Score=193.29 Aligned_cols=235 Identities=21% Similarity=0.313 Sum_probs=180.2
Q ss_pred cCcccccchhhhcccceeEEeccCCCcEEEEEECCCC---CEEEEEeCCCcEEEEECCCCcEEEE-e--ccCCCcceEEE
Q 005506 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKG---SLLISGSDDTHINVWSYSSRKLLHS-I--ETGHSANVFCT 99 (693)
Q Consensus 26 ~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g---~~LaSgs~Dg~I~IWd~~~~~~~~~-l--~~~h~~~I~sv 99 (693)
++..+++|+ ..++..+++.||.++|.+++|.... ..|+++|.|.++++|.++.+..... + ..||...|-+|
T Consensus 123 YDg~~riWd---~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sV 199 (423)
T KOG0313|consen 123 YDGTSRIWD---LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSV 199 (423)
T ss_pred cCCeeEEEe---cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEE
Confidence 345556665 4577899999999999988887543 3699999999999999887643221 1 14999999999
Q ss_pred EEeeCCCCCEEEEEeCCCcEEEEEcCCCCCC---------------CCCCCCCCCceeeccCCCCeEEEEEecCCCcEEE
Q 005506 100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGR---------------GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW 164 (693)
Q Consensus 100 ~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~---------------~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~ 164 (693)
...++ +..+++|+.|.+|.||+....... ......-.|+.++.+|..+|.++.|++ ...+.
T Consensus 200 sv~~s--gtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~y 275 (423)
T KOG0313|consen 200 SVDSS--GTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIY 275 (423)
T ss_pred EecCC--CCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCceE
Confidence 99998 699999999999999994321100 001122357888999999999999987 56788
Q ss_pred EEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 005506 165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD 244 (693)
Q Consensus 165 Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD 244 (693)
+++.|-+|+.||+.++..... + .....+.|++.+|. .++|++|+.|..||+||
T Consensus 276 S~SwDHTIk~WDletg~~~~~-----------~---------------~~~ksl~~i~~~~~-~~Ll~~gssdr~irl~D 328 (423)
T KOG0313|consen 276 SVSWDHTIKVWDLETGGLKST-----------L---------------TTNKSLNCISYSPL-SKLLASGSSDRHIRLWD 328 (423)
T ss_pred eecccceEEEEEeecccceee-----------e---------------ecCcceeEeecccc-cceeeecCCCCceeecC
Confidence 999999999999998763211 1 11346889999996 78999999999999999
Q ss_pred cCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCC-EEEEEecCCcEEEEECCCCC
Q 005506 245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 245 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~-~L~sgs~Dg~V~lwdl~~~~ 312 (693)
.|++.-- ...+.| -+|.+ +|.++.|+|... .|++++.|+++++||+++..
T Consensus 329 PR~~~gs----------~v~~s~-------~gH~n-wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 329 PRTGDGS----------VVSQSL-------IGHKN-WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred CCCCCCc----------eeEEee-------ecchh-hhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence 9976311 111222 46777 899999999776 45677889999999999965
No 82
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=3.8e-22 Score=215.19 Aligned_cols=223 Identities=16% Similarity=0.272 Sum_probs=177.8
Q ss_pred cEEEEEECC-CCCEEEEEeCCCcEEEEECCC---CcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCC
Q 005506 52 CVNAISWNS-KGSLLISGSDDTHINVWSYSS---RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 127 (693)
Q Consensus 52 ~V~~l~~s~-~g~~LaSgs~Dg~I~IWd~~~---~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~ 127 (693)
.++.+.|+. +.++|||++..|.|.+||+.. .+.+..+ ..|...|.++.|++.. ..+|++|+.||+|++||++..
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f-~EH~Rs~~~ldfh~te-p~iliSGSQDg~vK~~DlR~~ 166 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVF-NEHERSANKLDFHSTE-PNILISGSQDGTVKCWDLRSK 166 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHh-hhhccceeeeeeccCC-ccEEEecCCCceEEEEeeecc
Confidence 456788886 468999999999999999987 4555666 7899999999999986 789999999999999999975
Q ss_pred CCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceee
Q 005506 128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (693)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 207 (693)
....++.+....|+.++|+|..++.|+++.+.|.|++||+|....+
T Consensus 167 ----------~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~------------------------ 212 (839)
T KOG0269|consen 167 ----------KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRC------------------------ 212 (839)
T ss_pred ----------cccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhH------------------------
Confidence 3466677788999999999999999999999999999999998754
Q ss_pred ecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEE
Q 005506 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 287 (693)
Q Consensus 208 l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~f 287 (693)
......|..+|.|+.|+|+ ..+||||+.|+.|+|||..+..... ..++ +...+|..|+|
T Consensus 213 ~~k~~AH~GpV~c~nwhPn-r~~lATGGRDK~vkiWd~t~~~~~~--------~~tI------------nTiapv~rVkW 271 (839)
T KOG0269|consen 213 EKKLTAHNGPVLCLNWHPN-REWLATGGRDKMVKIWDMTDSRAKP--------KHTI------------NTIAPVGRVKW 271 (839)
T ss_pred HHHhhcccCceEEEeecCC-CceeeecCCCccEEEEeccCCCccc--------eeEE------------eecceeeeeee
Confidence 2223367889999999995 7899999999999999998643211 1122 22346999999
Q ss_pred cCCCCEEE-EEec--CCcEEEEECCCCCcceEEee-cCCCceeEEecc
Q 005506 288 SPNGEEVL-LSYS--GEHVYLMDVNHAGGRAMRYT-VGDASKIMSFTP 331 (693)
Q Consensus 288 spdg~~L~-sgs~--Dg~V~lwdl~~~~~~~~~~~-~~~~~~~~~~~p 331 (693)
-|..++.+ +++. |-.|+|||++.+-.+...+. +.+....++|..
T Consensus 272 RP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 272 RPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDS 319 (839)
T ss_pred ccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccC
Confidence 99887655 4443 78999999999776655554 344455566654
No 83
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=2.6e-21 Score=193.51 Aligned_cols=219 Identities=21% Similarity=0.300 Sum_probs=169.3
Q ss_pred ceeEEeccCCCcEEEEEECCCC--CEEEEEeCCCcEEEEECCC----------------CcEEEEeccCCCcceEEEEEe
Q 005506 41 SQERELEGHQGCVNAISWNSKG--SLLISGSDDTHINVWSYSS----------------RKLLHSIETGHSANVFCTKFV 102 (693)
Q Consensus 41 ~~~~~l~gH~~~V~~l~~s~~g--~~LaSgs~Dg~I~IWd~~~----------------~~~~~~l~~~h~~~I~sv~f~ 102 (693)
......-+|.++|+.+.-.+-| .+.|+-+..|.|.||++.. .+++.++ .+|.+.=+.++|+
T Consensus 142 ~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~-~ghk~EGy~LdWS 220 (440)
T KOG0302|consen 142 QIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTF-NGHKGEGYGLDWS 220 (440)
T ss_pred cccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEe-cccCccceeeecc
Confidence 3344455799999999988854 5777888999999999853 2456666 6899999999999
Q ss_pred eCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCC
Q 005506 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (693)
Q Consensus 103 p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~ 182 (693)
|-. ...|+||..-+.|++|...++.-.. -...+.+|+..|-.|+|+|....+|+|||.||+|+|||+|.+..
T Consensus 221 p~~-~g~LlsGDc~~~I~lw~~~~g~W~v-------d~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~ 292 (440)
T KOG0302|consen 221 PIK-TGRLLSGDCVKGIHLWEPSTGSWKV-------DQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK 292 (440)
T ss_pred ccc-ccccccCccccceEeeeeccCceee-------cCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc
Confidence 964 4568888888999999998743221 12345679999999999999999999999999999999998742
Q ss_pred CCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCC
Q 005506 183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP 262 (693)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~ 262 (693)
.+ | +. ...|...|+-|+|+...+ +||+|+.||+++|||+|..+.- .
T Consensus 293 ~~--------~--------------~~-~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~----------~ 338 (440)
T KOG0302|consen 293 KA--------A--------------VS-TKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSG----------Q 338 (440)
T ss_pred cc--------e--------------eE-eeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCC----------C
Confidence 20 0 11 135667899999999865 9999999999999999976532 1
Q ss_pred cccccccCccccCCCCccceEEEEEcCCC-CEEEEEecCCcEEEEECCC
Q 005506 263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~V~~v~fspdg-~~L~sgs~Dg~V~lwdl~~ 310 (693)
.+..| ..|.. +|++|.|+|.. ..|++++.|.+|.|||+.-
T Consensus 339 pVA~f-------k~Hk~-pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 339 PVATF-------KYHKA-PITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred cceeE-------EeccC-CeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 22222 23444 79999999865 5677888899999999865
No 84
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.87 E-value=1.2e-21 Score=191.81 Aligned_cols=205 Identities=23% Similarity=0.464 Sum_probs=172.4
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEec-------cCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 005506 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-------TGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (693)
Q Consensus 48 gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~-------~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~ 120 (693)
|...-+-|..|+|||++|++||.||.|-||++.+|+....+. .-+...|.|+.|+.++ .++++|+.||.|+
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs--EMlAsGsqDGkIK 288 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS--EMLASGSQDGKIK 288 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccH--HHhhccCcCCcEE
Confidence 455678899999999999999999999999999998665542 2477899999999994 8999999999999
Q ss_pred EEEcCCCCCCCCCCCCCCCceeec-cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEe
Q 005506 121 LFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (693)
Q Consensus 121 vwdl~~~~~~~~~~~~~~~~~~~~-~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~ 199 (693)
||.+.++ .++..|. +|+..|+++.|+.++ ..+++++.|-+||+.-+.+++
T Consensus 289 vWri~tG----------~ClRrFdrAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK------------------ 339 (508)
T KOG0275|consen 289 VWRIETG----------QCLRRFDRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGK------------------ 339 (508)
T ss_pred EEEEecc----------hHHHHhhhhhccCeeEEEEccCc-chhhcccccceEEEeccccch------------------
Confidence 9999975 4566665 899999999999944 566699999999999998876
Q ss_pred ccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCc
Q 005506 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (693)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (693)
.+..+.+|...|+...|.++ |+.+++++.||+|++|+..+. .|+.+|.|.. ..
T Consensus 340 -------~LKEfrGHsSyvn~a~ft~d-G~~iisaSsDgtvkvW~~Ktt-------------eC~~Tfk~~~------~d 392 (508)
T KOG0275|consen 340 -------CLKEFRGHSSYVNEATFTDD-GHHIISASSDGTVKVWHGKTT-------------ECLSTFKPLG------TD 392 (508)
T ss_pred -------hHHHhcCccccccceEEcCC-CCeEEEecCCccEEEecCcch-------------hhhhhccCCC------Cc
Confidence 34556688889999999997 789999999999999999875 5777775543 23
Q ss_pred cceEEEEEcCCC-CEEEEEecCCcEEEEECCC
Q 005506 280 LHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 280 ~~V~~v~fspdg-~~L~sgs~Dg~V~lwdl~~ 310 (693)
.+|+++..-|.+ ..++++...++|++.++..
T Consensus 393 ~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG 424 (508)
T KOG0275|consen 393 YPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG 424 (508)
T ss_pred ccceeEEEcCCCCceEEEEcCCCeEEEEeccc
Confidence 478888887754 6788888899999999987
No 85
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=3.4e-20 Score=173.54 Aligned_cols=234 Identities=22% Similarity=0.289 Sum_probs=172.9
Q ss_pred eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEE-----EEeccCCCcceEEEEEee--CCCCCEEEEEe-CCC
Q 005506 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL-----HSIETGHSANVFCTKFVP--ETSDELVVSGA-GDA 117 (693)
Q Consensus 46 l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~-----~~l~~~h~~~I~sv~f~p--~~~~~~l~sgs-~Dg 117 (693)
-+.|.+.|.|.+|+|+|.+||+|+.|++|++.-+....+. ..+ .-|.+.|..++|.. .+.+.+|++++ .|.
T Consensus 85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~-nmhdgtirdl~fld~~~s~~~il~s~gagdc 163 (350)
T KOG0641|consen 85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEF-NMHDGTIRDLAFLDDPESGGAILASAGAGDC 163 (350)
T ss_pred ccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceee-eecCCceeeeEEecCCCcCceEEEecCCCcc
Confidence 4578999999999999999999999999999876533221 233 45899999999974 44456777765 466
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEE
Q 005506 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (693)
Q Consensus 118 ~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l 197 (693)
.|.+-|...+ .+.+.+.+|++.|.++-- - ++.+|++|+.|.+|++||+|-...+ +++
T Consensus 164 ~iy~tdc~~g----------~~~~a~sghtghilalys-w-n~~m~~sgsqdktirfwdlrv~~~v-----------~~l 220 (350)
T KOG0641|consen 164 KIYITDCGRG----------QGFHALSGHTGHILALYS-W-NGAMFASGSQDKTIRFWDLRVNSCV-----------NTL 220 (350)
T ss_pred eEEEeecCCC----------CcceeecCCcccEEEEEE-e-cCcEEEccCCCceEEEEeeecccee-----------eec
Confidence 7777777655 568889999999988732 2 5689999999999999999976533 222
Q ss_pred EeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCC
Q 005506 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 277 (693)
Q Consensus 198 ~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (693)
-.-.. ...-....|.++++.|. +++|++|-.|....+||+|-+.++. .| +.|
T Consensus 221 ~~~~~-------~~glessavaav~vdps-grll~sg~~dssc~lydirg~r~iq-------------~f-------~ph 272 (350)
T KOG0641|consen 221 DNDFH-------DGGLESSAVAAVAVDPS-GRLLASGHADSSCMLYDIRGGRMIQ-------------RF-------HPH 272 (350)
T ss_pred cCccc-------CCCcccceeEEEEECCC-cceeeeccCCCceEEEEeeCCceee-------------ee-------CCC
Confidence 11110 01112357899999997 7999999999999999999875543 33 223
Q ss_pred CccceEEEEEcCCCCEEEEEecCCcEEEEECCCCC--cceE--EeecCCCceeEEeccC
Q 005506 278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG--GRAM--RYTVGDASKIMSFTPT 332 (693)
Q Consensus 278 ~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~--~~~~--~~~~~~~~~~~~~~p~ 332 (693)
.. .|.+|.|+|...||++++.|..|++-|+...- +.+. .-.+.+......|+|.
T Consensus 273 sa-dir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~ 330 (350)
T KOG0641|consen 273 SA-DIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQ 330 (350)
T ss_pred cc-ceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCc
Confidence 33 59999999999999999999999999998632 1222 2234445555667774
No 86
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=4.8e-21 Score=196.64 Aligned_cols=248 Identities=19% Similarity=0.320 Sum_probs=190.6
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCC
Q 005506 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (693)
Q Consensus 50 ~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~ 129 (693)
.++|+||.-+|+|.+|+.|...|.|.+|.+.+|..+..+ .+|=.+|+|+.|+.+ |.+|+||+.||.|++|.+...-.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~-~aHYQ~ITcL~fs~d--gs~iiTgskDg~V~vW~l~~lv~ 157 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL-SAHYQSITCLKFSDD--GSHIITGSKDGAVLVWLLTDLVS 157 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHH-HhhccceeEEEEeCC--CcEEEecCCCccEEEEEEEeecc
Confidence 578999999999999999989999999999999999988 899999999999988 79999999999999999864211
Q ss_pred CCCCCCCCCCceeeccCCCCeEEEEEecC-CCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeee
Q 005506 130 RGLDDNAITPSALYQCHTRRVKKLAVEVG-NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 208 (693)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~~~V~~la~sp~-~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 208 (693)
.......+|...|..|+-+|+++...+. ....++|+|.|.++++||+..+... ...
T Consensus 158 -a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL--------------lti-------- 214 (476)
T KOG0646|consen 158 -ADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL--------------LTI-------- 214 (476)
T ss_pred -cccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceee--------------EEE--------
Confidence 1122245889999999999999999873 2347889999999999999876421 111
Q ss_pred cCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCccc-ccC--CCCCCcccccccCccccCCCCc-cceEE
Q 005506 209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC-QKR--MSPPPCVNYFCPMHLSEHGRSS-LHLTH 284 (693)
Q Consensus 209 ~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~-~~V~~ 284 (693)
.....+++++++|. ...+.+|+.+|.|.+.++........- ... .......+.+ .||.+ ..|++
T Consensus 215 ----~fp~si~av~lDpa-e~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~-------~Gh~~~~~ITc 282 (476)
T KOG0646|consen 215 ----TFPSSIKAVALDPA-ERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVL-------VGHENESAITC 282 (476)
T ss_pred ----ecCCcceeEEEccc-ccEEEecCCcceEEeeehhcCCcccccccccccccccceeeee-------ccccCCcceeE
Confidence 11357899999997 689999999999999998876532110 000 0000111111 34444 57999
Q ss_pred EEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCc
Q 005506 285 VTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNG 335 (693)
Q Consensus 285 v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~g 335 (693)
++.+-||..|++|+.||.|.|||+.+.++.........+++.+.+.|...+
T Consensus 283 Lais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~ 333 (476)
T KOG0646|consen 283 LAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERG 333 (476)
T ss_pred EEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccc
Confidence 999999999999999999999999996655554445667777777665433
No 87
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=4.3e-21 Score=196.55 Aligned_cols=215 Identities=16% Similarity=0.243 Sum_probs=175.4
Q ss_pred ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCC
Q 005506 47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 126 (693)
Q Consensus 47 ~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~ 126 (693)
++|.+.|.+++.++||++||+|+.|..|.||+..+.+.++.+ .+|.+.|.+++|-..+ +-+++++.|++|++|++..
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~-~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~ 275 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVF-KGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQ 275 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcc-cccccceeeeeeecCc--cceeeeecCCceEEEehhH
Confidence 489999999999999999999999999999999999999998 8999999999999874 7899999999999999996
Q ss_pred CCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCcee
Q 005506 127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206 (693)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 206 (693)
. ..+.++.+|.+.|..|.... -..++-+|+.|+++++|++..... .++
T Consensus 276 ~----------s~vetlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~eesq-------------lif-------- 323 (479)
T KOG0299|consen 276 L----------SYVETLYGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPEESQ-------------LIF-------- 323 (479)
T ss_pred h----------HHHHHHhCCccceeeechhc-ccceEEeccccceeEEEeccccce-------------eee--------
Confidence 5 45788899999999998775 456666667999999999954331 111
Q ss_pred eecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEE
Q 005506 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT 286 (693)
Q Consensus 207 ~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~ 286 (693)
.++...+-|++|-.+ ..|++|+.+|.|.+|++-..+|+........-.+-+ ..- ..+.+|++|+
T Consensus 324 -----rg~~~sidcv~~In~--~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~--------~~~-~~~~Witsla 387 (479)
T KOG0299|consen 324 -----RGGEGSIDCVAFIND--EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPEL--------DPV-NGNFWITSLA 387 (479)
T ss_pred -----eCCCCCeeeEEEecc--cceeeccCCceEEEeeecccCceeEeeccccccCCc--------ccc-ccccceeeeE
Confidence 123457888998874 589999999999999999988877654332211100 000 1114899999
Q ss_pred EcCCCCEEEEEecCCcEEEEECCCCC
Q 005506 287 FSPNGEEVLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 287 fspdg~~L~sgs~Dg~V~lwdl~~~~ 312 (693)
..|....+++|+.+|.|+||-+..+-
T Consensus 388 ~i~~sdL~asGS~~G~vrLW~i~~g~ 413 (479)
T KOG0299|consen 388 VIPGSDLLASGSWSGCVRLWKIEDGL 413 (479)
T ss_pred ecccCceEEecCCCCceEEEEecCCc
Confidence 99999999999999999999999863
No 88
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=5.2e-21 Score=180.39 Aligned_cols=243 Identities=21% Similarity=0.269 Sum_probs=184.2
Q ss_pred CcCcccccchhhhcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeC
Q 005506 25 DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 104 (693)
Q Consensus 25 ~~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~ 104 (693)
..++++++|. ..+..+++++.||...|..++.+.|+..|++|+.|+.|.+||+.+|+.++.+ .+|.+.|..++|+.+
T Consensus 36 GsdrtvrLWN--p~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~-rgH~aqVNtV~fNee 112 (307)
T KOG0316|consen 36 GSDRTVRLWN--PLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRF-RGHLAQVNTVRFNEE 112 (307)
T ss_pred CCCceEEeec--ccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeec-ccccceeeEEEecCc
Confidence 4557788876 4567789999999999999999999999999999999999999999999999 899999999999998
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCC
Q 005506 105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP 184 (693)
Q Consensus 105 ~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~ 184 (693)
+ ..+++|+.|.+|++||-+..+. +|++++......|.+|.++ .+.|++|+.||++|.||+|.++...
T Consensus 113 s--SVv~SgsfD~s~r~wDCRS~s~--------ePiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~l~s 179 (307)
T KOG0316|consen 113 S--SVVASGSFDSSVRLWDCRSRSF--------EPIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGTLSS 179 (307)
T ss_pred c--eEEEeccccceeEEEEcccCCC--------CccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeecceeeh
Confidence 4 8999999999999999996543 7899999889999999995 4789999999999999999886442
Q ss_pred CCCCCC---------ccc--------ceEEEeccCCceeeecCCCCCcc--ceEEEEEcCCCCcEEEEEeCCCcEEEEec
Q 005506 185 PAGSSH---------QEC--------RNILLDLRCGAKRSLADPPKQTL--SLKSCDISSTRPHLLLVGGSDAFARLYDR 245 (693)
Q Consensus 185 ~~~~~~---------~~~--------~~~l~~~~~~~~~~l~~~~~~~~--~v~sl~~sp~~~~~Latgs~Dg~IriwD~ 245 (693)
.-...+ ..| ...+++-.+|.. +....+|.. .-..++++.. ...+++|+.||.|++||+
T Consensus 180 Dy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGkl--L~sYkGhkn~eykldc~l~qs-dthV~sgSEDG~Vy~wdL 256 (307)
T KOG0316|consen 180 DYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKL--LKSYKGHKNMEYKLDCCLNQS-DTHVFSGSEDGKVYFWDL 256 (307)
T ss_pred hhcCCcceeEEecCCCCEEEEeeccceeeecccchhHH--HHHhcccccceeeeeeeeccc-ceeEEeccCCceEEEEEe
Confidence 111111 111 122334444432 222233322 2234556664 478999999999999999
Q ss_pred CCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEE
Q 005506 246 RMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMD 307 (693)
Q Consensus 246 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwd 307 (693)
-....+.++.. +....|++++++|.-.-|+++.. +.+++|-
T Consensus 257 vd~~~~sk~~~--------------------~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~ 297 (307)
T KOG0316|consen 257 VDETQISKLSV--------------------VSTVIVTDLSCHPTMDDFITATG-HGDLFWY 297 (307)
T ss_pred ccceeeeeecc--------------------CCceeEEeeecccCccceeEecC-Cceecee
Confidence 88765544321 11113899999998887777754 3455554
No 89
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.87 E-value=3.2e-22 Score=197.64 Aligned_cols=122 Identities=21% Similarity=0.202 Sum_probs=112.1
Q ss_pred CcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCC
Q 005506 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS 438 (693)
Q Consensus 359 ~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p 438 (693)
....++.||.+||++.+.++ |.+||.+|++||++.|.+ +++|+|||+||.+++. |..|+.||..||++||
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~-Y~eAv~kY~~AI~l~P~n------AVyycNRAAAy~~Lg~---~~~AVkDce~Al~iDp 146 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKD-YQEAVDKYTEAIELDPTN------AVYYCNRAAAYSKLGE---YEDAVKDCESALSIDP 146 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHhcCCCc------chHHHHHHHHHHHhcc---hHHHHHHHHHHHhcCh
Confidence 45678999999999999999 999999999999999998 9999999999999876 9999999999999999
Q ss_pred CCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHHHHHHHHH
Q 005506 439 SSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAA 490 (693)
Q Consensus 439 ~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l~~~i~~ 490 (693)
++.|||.|++.||+.+|++++|.+.|++++.++|+|....+.|+..+..+.+
T Consensus 147 ~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 147 HYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999998766666555555443
No 90
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.7e-21 Score=206.54 Aligned_cols=236 Identities=19% Similarity=0.230 Sum_probs=190.2
Q ss_pred eeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC--cEEEEeccCCCcceEEEEE-eeCCCCCEEEEEeCCCc
Q 005506 42 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR--KLLHSIETGHSANVFCTKF-VPETSDELVVSGAGDAE 118 (693)
Q Consensus 42 ~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~--~~~~~l~~~h~~~I~sv~f-~p~~~~~~l~sgs~Dg~ 118 (693)
....++.|.+-|+.+....+|+.|+|+|.|.+|++|+...+ -++.++ ..|.+-|.|+++ .++ ..++|+|+.|+.
T Consensus 65 ~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~sti-r~H~DYVkcla~~ak~--~~lvaSgGLD~~ 141 (735)
T KOG0308|consen 65 YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTI-RTHKDYVKCLAYIAKN--NELVASGGLDRK 141 (735)
T ss_pred hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhh-hcccchheeeeecccC--ceeEEecCCCcc
Confidence 46778999999999999999999999999999999999877 566777 689999999999 555 589999999999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeec-cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEE
Q 005506 119 VRLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (693)
Q Consensus 119 V~vwdl~~~~~~~~~~~~~~~~~~~~-~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l 197 (693)
|.+||++.+...........+...+. ++...|++++.++ .+.+|++|+..+.+++||.|+....
T Consensus 142 IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~ki-------------- 206 (735)
T KOG0308|consen 142 IFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCKKI-------------- 206 (735)
T ss_pred EEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceEEEecCcccceEEeccccccce--------------
Confidence 99999996533222112222233333 8899999999998 6689999999999999999987632
Q ss_pred EeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCC
Q 005506 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 277 (693)
Q Consensus 198 ~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (693)
....+|+..|..+-.+++ |..++++++||+|++||++.. .|+.++ ..|
T Consensus 207 -----------mkLrGHTdNVr~ll~~dD-Gt~~ls~sSDgtIrlWdLgqQ-------------rCl~T~-------~vH 254 (735)
T KOG0308|consen 207 -----------MKLRGHTDNVRVLLVNDD-GTRLLSASSDGTIRLWDLGQQ-------------RCLATY-------IVH 254 (735)
T ss_pred -----------eeeeccccceEEEEEcCC-CCeEeecCCCceEEeeecccc-------------ceeeeE-------Eec
Confidence 223378889999999997 789999999999999999864 566665 335
Q ss_pred CccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEE
Q 005506 278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMS 328 (693)
Q Consensus 278 ~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~ 328 (693)
.. .|+++..+|+-.++++|+.||.|+.=|+++......++...+++..+.
T Consensus 255 ~e-~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~ 304 (735)
T KOG0308|consen 255 KE-GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLH 304 (735)
T ss_pred cC-ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhh
Confidence 55 399999999999999999999999999999755555555555444333
No 91
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=7e-21 Score=186.05 Aligned_cols=226 Identities=23% Similarity=0.347 Sum_probs=188.9
Q ss_pred CCcCcccccchhhhcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEC------CC----------------
Q 005506 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSY------SS---------------- 81 (693)
Q Consensus 24 ~~~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~------~~---------------- 81 (693)
...+++.++|. +.+..++.++.||.|.|+||+|++.+.+++++|.|++..||.. ..
T Consensus 166 ASADhTA~iWs--~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~s 243 (481)
T KOG0300|consen 166 ASADHTARIWS--LESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHS 243 (481)
T ss_pred cccccceeEEe--eccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcc
Confidence 34556777775 7788999999999999999999999999999999999999962 11
Q ss_pred ------------------CcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceee
Q 005506 82 ------------------RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY 143 (693)
Q Consensus 82 ------------------~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~ 143 (693)
..++..+ ++|.+.|.+..|... ++.++|++.|.+..+||++++ +++..+
T Consensus 244 De~~~d~d~~~~sD~~tiRvPl~~l-tgH~~vV~a~dWL~g--g~Q~vTaSWDRTAnlwDVEtg----------e~v~~L 310 (481)
T KOG0300|consen 244 DEHNRDTDSSEKSDGHTIRVPLMRL-TGHRAVVSACDWLAG--GQQMVTASWDRTANLWDVETG----------EVVNIL 310 (481)
T ss_pred cccccccccccccCCceeeeeeeee-eccccceEehhhhcC--cceeeeeeccccceeeeeccC----------ceeccc
Confidence 0133445 789999999999987 799999999999999999976 678999
Q ss_pred ccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEE
Q 005506 144 QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI 223 (693)
Q Consensus 144 ~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~ 223 (693)
.+|....+.++.+| ...++++++.|.+.++||+|..- ..+..+.+|...|+++.|
T Consensus 311 tGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI------------------------~sV~VFQGHtdtVTS~vF 365 (481)
T KOG0300|consen 311 TGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAI------------------------QSVAVFQGHTDTVTSVVF 365 (481)
T ss_pred cCcchhccccccCC-cceEEEEeccCceeEeccchhhc------------------------ceeeeecccccceeEEEE
Confidence 99999999999999 66899999999999999999531 134455688899999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEecCCCC-CCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCc
Q 005506 224 SSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEH 302 (693)
Q Consensus 224 sp~~~~~Latgs~Dg~IriwD~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~ 302 (693)
+.+ ..+++|+.|.+|++||+++.. ++.++ ....+++.++.+..++.|+.-..+.+
T Consensus 366 ~~d--d~vVSgSDDrTvKvWdLrNMRsplATI----------------------RtdS~~NRvavs~g~~iIAiPhDNRq 421 (481)
T KOG0300|consen 366 NTD--DRVVSGSDDRTVKVWDLRNMRSPLATI----------------------RTDSPANRVAVSKGHPIIAIPHDNRQ 421 (481)
T ss_pred ecC--CceeecCCCceEEEeeeccccCcceee----------------------ecCCccceeEeecCCceEEeccCCce
Confidence 985 589999999999999999753 22222 22336899999999999999999999
Q ss_pred EEEEECCCCCc
Q 005506 303 VYLMDVNHAGG 313 (693)
Q Consensus 303 V~lwdl~~~~~ 313 (693)
|+|||++....
T Consensus 422 vRlfDlnG~Rl 432 (481)
T KOG0300|consen 422 VRLFDLNGNRL 432 (481)
T ss_pred EEEEecCCCcc
Confidence 99999998543
No 92
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.86 E-value=5.6e-22 Score=183.22 Aligned_cols=128 Identities=25% Similarity=0.220 Sum_probs=118.9
Q ss_pred CcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCC
Q 005506 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS 438 (693)
Q Consensus 359 ~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p 438 (693)
....+..+|..||+.|+.|. |..|...|+.||..+|.. ..+++++||+|||+|++|++. +.+||.||.+||+|+|
T Consensus 91 ~~~kad~lK~EGN~~F~ngd-yeeA~skY~~Ale~cp~~-~~e~rsIly~Nraaa~iKl~k---~e~aI~dcsKaiel~p 165 (271)
T KOG4234|consen 91 AIEKADSLKKEGNELFKNGD-YEEANSKYQEALESCPST-STEERSILYSNRAAALIKLRK---WESAIEDCSKAIELNP 165 (271)
T ss_pred HHHHHHHHHHHHHHhhhccc-HHHHHHHHHHHHHhCccc-cHHHHHHHHhhhHHHHHHhhh---HHHHHHHHHhhHhcCc
Confidence 35667889999999999999 999999999999999976 347889999999999999766 8999999999999999
Q ss_pred CCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHHHHHHHHHH
Q 005506 439 SSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAA 491 (693)
Q Consensus 439 ~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l~~~i~~~ 491 (693)
.+.||+.|||.||..+.+|++|+++|+++++++|++.++++.+.+|...|.+.
T Consensus 166 ty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~er 218 (271)
T KOG4234|consen 166 TYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINER 218 (271)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHH
Confidence 99999999999999999999999999999999999999999999998887664
No 93
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.86 E-value=8.9e-21 Score=196.08 Aligned_cols=245 Identities=15% Similarity=0.205 Sum_probs=180.2
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEe-----------ccCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 005506 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI-----------ETGHSANVFCTKFVPETSDELVVSGAGDA 117 (693)
Q Consensus 49 H~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l-----------~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg 117 (693)
-...|++++|++.|..|++.+....++|+|-.....+... ..||...++|.+|+|.+ -..|+|++.||
T Consensus 213 E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~-k~~FlT~s~Dg 291 (641)
T KOG0772|consen 213 ETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDN-KEEFLTCSYDG 291 (641)
T ss_pred cccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCc-ccceEEecCCC
Confidence 3568999999999998888888889999997654433322 25899999999999997 57899999999
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCceee-----ccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcc
Q 005506 118 EVRLFNLSRFSGRGLDDNAITPSALY-----QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE 192 (693)
Q Consensus 118 ~V~vwdl~~~~~~~~~~~~~~~~~~~-----~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~ 192 (693)
++||||+...... ...+ .+..-.|+.++|+| ++.+||+|..||.|.+||.+....-+
T Consensus 292 tlRiWdv~~~k~q---------~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p-------- 353 (641)
T KOG0772|consen 292 TLRIWDVNNTKSQ---------LQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRP-------- 353 (641)
T ss_pred cEEEEecCCchhh---------eeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCccccc--------
Confidence 9999999864321 2222 23445789999999 67889999999999999986543210
Q ss_pred cceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCcc
Q 005506 193 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL 272 (693)
Q Consensus 193 ~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (693)
.+ .+.........|+||+||++ +++|++-+.|+++++||+|..+ .|+..+....
T Consensus 354 ----~~--------~vk~AH~~g~~Itsi~FS~d-g~~LlSRg~D~tLKvWDLrq~k------------kpL~~~tgL~- 407 (641)
T KOG0772|consen 354 ----VM--------KVKDAHLPGQDITSISFSYD-GNYLLSRGFDDTLKVWDLRQFK------------KPLNVRTGLP- 407 (641)
T ss_pred ----ce--------EeeeccCCCCceeEEEeccc-cchhhhccCCCceeeeeccccc------------cchhhhcCCC-
Confidence 00 11111122348999999997 7999999999999999999754 2222221111
Q ss_pred ccCCCCccceEEEEEcCCCCEEEEEec------CCcEEEEECCCCCcceEEeecCCCceeEEeccCCCcccccCCcc
Q 005506 273 SEHGRSSLHLTHVTFSPNGEEVLLSYS------GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIH 343 (693)
Q Consensus 273 ~~~~~~~~~V~~v~fspdg~~L~sgs~------Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~ 343 (693)
...+-+.++|||+.+.|++|.. -|.+++||..+-.....+....-.+....|+|..+.+-.....+
T Consensus 408 -----t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG 479 (641)
T KOG0772|consen 408 -----TPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDG 479 (641)
T ss_pred -----ccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCC
Confidence 1124678999999999999876 36799999998665555555555566678999988876555444
No 94
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=8.1e-21 Score=203.27 Aligned_cols=225 Identities=22% Similarity=0.287 Sum_probs=185.4
Q ss_pred CCcCcccccchhhhcccceeEEecc-CCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEe
Q 005506 24 PDVNHSLQMHSSLVRRLSQERELEG-HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102 (693)
Q Consensus 24 ~~~~~~l~~~~~~i~~l~~~~~l~g-H~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~ 102 (693)
......+++|+ +...+.+.++.+ |...|-+|+|+ +..+.+|+.|+.|.++|+...+.......+|...|..++|+
T Consensus 235 G~~~g~v~iwD--~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws 310 (484)
T KOG0305|consen 235 GTSDGTVQIWD--VKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS 310 (484)
T ss_pred eecCCeEEEEe--hhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC
Confidence 34557788877 455566777888 99999999998 67899999999999999987765554337999999999999
Q ss_pred eCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEe--CCCcEEEEeCCCC
Q 005506 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS--EDGTLRQHDFRQG 180 (693)
Q Consensus 103 p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs--~Dg~V~lwDlr~~ 180 (693)
++ +.++|+|+.|+.|.|||.... .+...+..|...|+.++|+|-...+||+|+ .|++|++||+.++
T Consensus 311 ~d--~~~lASGgnDN~~~Iwd~~~~----------~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g 378 (484)
T KOG0305|consen 311 PD--GNQLASGGNDNVVFIWDGLSP----------EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG 378 (484)
T ss_pred CC--CCeeccCCCccceEeccCCCc----------cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC
Confidence 99 799999999999999999543 678888999999999999999999999986 5999999999987
Q ss_pred CCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEE-EeCCCcEEEEecCCCCCCcccccCCC
Q 005506 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV-GGSDAFARLYDRRMLPPLTSCQKRMS 259 (693)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Lat-gs~Dg~IriwD~r~~~~~~~~~~~~~ 259 (693)
.....+ .....|.+|.|++...+++.+ |..+..|.||+..+.+++..+
T Consensus 379 ~~i~~v--------------------------dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l----- 427 (484)
T KOG0305|consen 379 ARIDSV--------------------------DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAEL----- 427 (484)
T ss_pred cEeccc--------------------------ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeee-----
Confidence 633111 224579999999975455544 456889999999886544332
Q ss_pred CCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCC
Q 005506 260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (693)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~ 311 (693)
.+|.. .|.+++++|||..+++|+.|+++++|++-..
T Consensus 428 ---------------~gH~~-RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 428 ---------------LGHTS-RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ---------------cCCcc-eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 45666 5999999999999999999999999999884
No 95
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.86 E-value=3.3e-20 Score=185.17 Aligned_cols=213 Identities=16% Similarity=0.255 Sum_probs=178.5
Q ss_pred cceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 005506 40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (693)
Q Consensus 40 l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V 119 (693)
-.-+.+|..|++.|.+++.+|+.+++|||+.|....||+..++.....+ .+|...|+++.|+.+ +.+||||..+|.|
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~el-tgHKDSVt~~~Fshd--gtlLATGdmsG~v 130 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGEL-TGHKDSVTCCSFSHD--GTLLATGDMSGKV 130 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEe-cCCCCceEEEEEccC--ceEEEecCCCccE
Confidence 3456789999999999999999999999999999999999999988888 899999999999998 7999999999999
Q ss_pred EEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEe
Q 005506 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (693)
Q Consensus 120 ~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~ 199 (693)
+||...++. ....+..--..+--+.|+| -..+|+.|+.||.|-+|.+.+...+
T Consensus 131 ~v~~~stg~----------~~~~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~~~---------------- 183 (399)
T KOG0296|consen 131 LVFKVSTGG----------EQWKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQALC---------------- 183 (399)
T ss_pred EEEEcccCc----------eEEEeecccCceEEEEecc-cccEEEeecCCCcEEEEECCCccee----------------
Confidence 999999752 2334433456778889999 7789999999999999999774322
Q ss_pred ccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCc
Q 005506 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (693)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (693)
..+.+|..++++-.|.|+ |+.+++|..||+|++|++.+++++...... ..
T Consensus 184 ---------kv~~Gh~~~ct~G~f~pd-GKr~~tgy~dgti~~Wn~ktg~p~~~~~~~--------------------e~ 233 (399)
T KOG0296|consen 184 ---------KVMSGHNSPCTCGEFIPD-GKRILTGYDDGTIIVWNPKTGQPLHKITQA--------------------EG 233 (399)
T ss_pred ---------eEecCCCCCcccccccCC-CceEEEEecCceEEEEecCCCceeEEeccc--------------------cc
Confidence 223357788999999998 899999999999999999998776544211 12
Q ss_pred cceEEEEEcCCCCEEEEEecCCcEEEEECCCCC
Q 005506 280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 280 ~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~ 312 (693)
...+++.++..+..++.|..++.+++-+..+++
T Consensus 234 ~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgK 266 (399)
T KOG0296|consen 234 LELPCISLNLAGSTLTKGNSEGVACGVNNGSGK 266 (399)
T ss_pred CcCCccccccccceeEeccCCccEEEEccccce
Confidence 246778889999999999999999999888865
No 96
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=3.4e-20 Score=181.70 Aligned_cols=264 Identities=14% Similarity=0.109 Sum_probs=188.4
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCC
Q 005506 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (693)
Q Consensus 50 ~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~ 129 (693)
.+.|.++.|+|.+..|+.+++||.+++|+.........+ .|..++.+++|.+. ..+++|+.||.|+.+|++.+
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~--~~~~plL~c~F~d~---~~~~~G~~dg~vr~~Dln~~-- 85 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF--KHGAPLLDCAFADE---STIVTGGLDGQVRRYDLNTG-- 85 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe--ecCCceeeeeccCC---ceEEEeccCceEEEEEecCC--
Confidence 678999999999999999999999999999988666666 68899999999986 68999999999999999974
Q ss_pred CCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCC----------------CCCCccc
Q 005506 130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA----------------GSSHQEC 193 (693)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~----------------~~~~~~~ 193 (693)
....+..|...|.+|...+ ....+++||.|++|++||.|........ ..+..+.
T Consensus 86 ---------~~~~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r 155 (323)
T KOG1036|consen 86 ---------NEDQIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDR 155 (323)
T ss_pred ---------cceeeccCCCceEEEEeec-cCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCc
Confidence 3556677999999999998 5678889999999999999963322110 1111223
Q ss_pred ceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccc
Q 005506 194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 273 (693)
Q Consensus 194 ~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (693)
...+||++.-..........-...+.|+++.|. +.=+++++-||.|.+=.+.......+. ...-+|-... .
T Consensus 156 ~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn-~eGy~~sSieGRVavE~~d~s~~~~sk---kyaFkCHr~~-----~ 226 (323)
T KOG1036|consen 156 KVLIYDLRNLDEPFQRRESSLKYQTRCVALVPN-GEGYVVSSIEGRVAVEYFDDSEEAQSK---KYAFKCHRLS-----E 226 (323)
T ss_pred eEEEEEcccccchhhhccccceeEEEEEEEecC-CCceEEEeecceEEEEccCCchHHhhh---ceeEEeeecc-----c
Confidence 345667766544333333344567899999995 677899999999988666543111000 0000111110 0
Q ss_pred cCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCccccc
Q 005506 274 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQ 339 (693)
Q Consensus 274 ~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~ 339 (693)
......++|++|+|+|--..|+||+.||.|.+||+.+.+....+..-...+..++|+-+...++..
T Consensus 227 ~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia 292 (323)
T KOG1036|consen 227 KDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIA 292 (323)
T ss_pred CCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEE
Confidence 011223479999999999999999999999999999955444333333446667777665555443
No 97
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.86 E-value=4.4e-20 Score=187.63 Aligned_cols=230 Identities=18% Similarity=0.273 Sum_probs=184.5
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCC
Q 005506 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 130 (693)
Q Consensus 51 ~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~ 130 (693)
..+.++...+....++||+.|..+.++|..+++.+..+ .||...|+++.|+|+ ...+++++.|..|+||.....+
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~-~Gh~kki~~v~~~~~--~~~v~~aSad~~i~vws~~~~s-- 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATL-KGHTKKITSVKFHKD--LDTVITASADEIIRVWSVPLSS-- 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhc-cCcceEEEEEEeccc--hhheeecCCcceEEeecccccc--
Confidence 57889999888789999999999999999999999888 899999999999999 4789999999999999998653
Q ss_pred CCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecC
Q 005506 131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD 210 (693)
Q Consensus 131 ~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~ 210 (693)
.......|..+|+.+..+| .+.+|++++.||+..+.|++++... .+. .
T Consensus 295 --------~~~~~~~h~~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~l-----------t~v------------s 342 (506)
T KOG0289|consen 295 --------EPTSSRPHEEPVTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQL-----------TVV------------S 342 (506)
T ss_pred --------Cccccccccccceeeeecc-CCcEEEEecCCceEEEEEccCCcEE-----------EEE------------e
Confidence 3456678999999999999 6788999999999999999987632 111 1
Q ss_pred CCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCC
Q 005506 211 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN 290 (693)
Q Consensus 211 ~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspd 290 (693)
.......+++.+|+|+ |.+|.+|..||.|+|||+.....+..| .+|.+ +|..|+|+.+
T Consensus 343 ~~~s~v~~ts~~fHpD-gLifgtgt~d~~vkiwdlks~~~~a~F--------------------pght~-~vk~i~FsEN 400 (506)
T KOG0289|consen 343 DETSDVEYTSAAFHPD-GLIFGTGTPDGVVKIWDLKSQTNVAKF--------------------PGHTG-PVKAISFSEN 400 (506)
T ss_pred eccccceeEEeeEcCC-ceEEeccCCCceEEEEEcCCccccccC--------------------CCCCC-ceeEEEeccC
Confidence 1123457899999998 799999999999999999976544333 34555 7999999999
Q ss_pred CCEEEEEecCCcEEEEECCCCCcceEEee-cCCCceeEEeccCCCccccc
Q 005506 291 GEEVLLSYSGEHVYLMDVNHAGGRAMRYT-VGDASKIMSFTPTLNGLELQ 339 (693)
Q Consensus 291 g~~L~sgs~Dg~V~lwdl~~~~~~~~~~~-~~~~~~~~~~~p~~~g~~~~ 339 (693)
|-||++++.|+.|++||++..+.-+.+.. .......+.|.+...-+...
T Consensus 401 GY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~ 450 (506)
T KOG0289|consen 401 GYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA 450 (506)
T ss_pred ceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee
Confidence 99999999999999999998653333222 12235556666655444333
No 98
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.85 E-value=6.1e-20 Score=197.43 Aligned_cols=237 Identities=21% Similarity=0.331 Sum_probs=191.4
Q ss_pred EEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 005506 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 123 (693)
Q Consensus 44 ~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwd 123 (693)
.++.||...|.+++++.+...++||+. +.|+||+..++++++++.. +-+.+.+|.|. ++++++|...|.+.+||
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~---~y~l~~~Fvpg--d~~Iv~G~k~Gel~vfd 440 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITC---GYILASKFVPG--DRYIVLGTKNGELQVFD 440 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEecc---ccEEEEEecCC--CceEEEeccCCceEEEE
Confidence 467799999999999999998988876 5899999999999999943 37999999998 79999999999999999
Q ss_pred cCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCC
Q 005506 124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 203 (693)
Q Consensus 124 l~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (693)
+... ..+....+|.+.|.+|+..| ++.-++|||.|.+|++||+.-....+ .....++.+...
T Consensus 441 laS~----------~l~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~-------gt~~k~lsl~~~ 502 (888)
T KOG0306|consen 441 LASA----------SLVETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVP-------GTQKKVLSLKHT 502 (888)
T ss_pred eehh----------hhhhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccC-------cccceeeeeccc
Confidence 9864 44667789999999999999 66788899999999999986432110 001111221111
Q ss_pred ceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceE
Q 005506 204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 283 (693)
Q Consensus 204 ~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 283 (693)
... .-...|.|+++||+ +.+||++--|.+|++|-+.+.+-. +.-.||.- ||.
T Consensus 503 rtL------el~ddvL~v~~Spd-gk~LaVsLLdnTVkVyflDtlKFf--------------------lsLYGHkL-PV~ 554 (888)
T KOG0306|consen 503 RTL------ELEDDVLCVSVSPD-GKLLAVSLLDNTVKVYFLDTLKFF--------------------LSLYGHKL-PVL 554 (888)
T ss_pred eEE------eccccEEEEEEcCC-CcEEEEEeccCeEEEEEecceeee--------------------eeeccccc-cee
Confidence 111 11346899999997 799999999999999999876422 11145554 899
Q ss_pred EEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccC
Q 005506 284 HVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT 332 (693)
Q Consensus 284 ~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~ 332 (693)
++.+|||++.++||+.|..|++|-++-|.+-..++.|.+.+..+.|-|.
T Consensus 555 smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~ 603 (888)
T KOG0306|consen 555 SMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPK 603 (888)
T ss_pred EEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEccc
Confidence 9999999999999999999999999999999999999888888888774
No 99
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=1.3e-20 Score=199.97 Aligned_cols=249 Identities=18% Similarity=0.230 Sum_probs=193.2
Q ss_pred cCCCcEE---EEEECC-CCCEEEEEeCCCcEEEEECCCCc------EEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 005506 48 GHQGCVN---AISWNS-KGSLLISGSDDTHINVWSYSSRK------LLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (693)
Q Consensus 48 gH~~~V~---~l~~s~-~g~~LaSgs~Dg~I~IWd~~~~~------~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg 117 (693)
.|...|+ .+..+. .+++|.||+.||.|++|+..... .+..+ ..|.+.|.++..+.+ ++.|++++.|.
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asm-e~HsDWVNDiiL~~~--~~tlIS~SsDt 95 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASM-EHHSDWVNDIILCGN--GKTLISASSDT 95 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhh-hhhHhHHhhHHhhcC--CCceEEecCCc
Confidence 4666677 666665 56679999999999999986432 35566 689999999999887 68999999999
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEE
Q 005506 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (693)
Q Consensus 118 ~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l 197 (693)
+|++|+...... -+..++..|.+.|+||+....+..+++|||-|+.|.+||+.++... ..+
T Consensus 96 TVK~W~~~~~~~--------~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~---l~~-------- 156 (735)
T KOG0308|consen 96 TVKVWNAHKDNT--------FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTAT---LVA-------- 156 (735)
T ss_pred eEEEeecccCcc--------hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchh---hhh--------
Confidence 999999986421 3577888899999999994447789999999999999999977420 000
Q ss_pred EeccCCceeeecCCC-CCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCC
Q 005506 198 LDLRCGAKRSLADPP-KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (693)
Q Consensus 198 ~~~~~~~~~~l~~~~-~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (693)
+.......... ++...|++++.++. +..|+.|+..+.+++||.++.+.+..+ +|
T Consensus 157 ----s~n~~t~~sl~sG~k~siYSLA~N~t-~t~ivsGgtek~lr~wDprt~~kimkL--------------------rG 211 (735)
T KOG0308|consen 157 ----SFNNVTVNSLGSGPKDSIYSLAMNQT-GTIIVSGGTEKDLRLWDPRTCKKIMKL--------------------RG 211 (735)
T ss_pred ----hccccccccCCCCCccceeeeecCCc-ceEEEecCcccceEEeccccccceeee--------------------ec
Confidence 00001111112 56678999999997 689999999999999999987654333 45
Q ss_pred CCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCcccccCCccc
Q 005506 277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHD 344 (693)
Q Consensus 277 ~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~ 344 (693)
|.. .|..+..++||+.++++++||+|++||+.-..+...+..+.+.+..+..+|....+.+....+.
T Consensus 212 HTd-NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~ 278 (735)
T KOG0308|consen 212 HTD-NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGN 278 (735)
T ss_pred ccc-ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCc
Confidence 666 5999999999999999999999999999998877777777777777777777666544444433
No 100
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.84 E-value=1.2e-20 Score=190.89 Aligned_cols=242 Identities=18% Similarity=0.197 Sum_probs=186.4
Q ss_pred CCCcCcchhhhhcccccCCC-----------------------------CCcCcccccchhhhcccceeEEeccCCCcEE
Q 005506 4 FPFHDGSIYDMLDTRHTDTR-----------------------------PDVNHSLQMHSSLVRRLSQERELEGHQGCVN 54 (693)
Q Consensus 4 ~~~~~~~~~~~~~~r~~~~~-----------------------------~~~~~~l~~~~~~i~~l~~~~~l~gH~~~V~ 54 (693)
-+|++|+.+..+..|.+.+. +..++.+++|. +..+.+.++|.||++.|+
T Consensus 188 dtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wn--vd~~r~~~TLsGHtdkVt 265 (459)
T KOG0288|consen 188 DTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWN--VDSLRLRHTLSGHTDKVT 265 (459)
T ss_pred chhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeee--ccchhhhhhhccccccee
Confidence 67888888888888865421 22335566664 777888999999999999
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCC
Q 005506 55 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD 134 (693)
Q Consensus 55 ~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 134 (693)
++.|......+++|+.|.+|++||+....|..++. ....+.+|...+ ..+++|-.|++||+||++..
T Consensus 266 ~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l--~~S~cnDI~~~~----~~~~SgH~DkkvRfwD~Rs~------- 332 (459)
T KOG0288|consen 266 AAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL--PGSQCNDIVCSI----SDVISGHFDKKVRFWDIRSA------- 332 (459)
T ss_pred eehhhccccceeeccccchhhhhhhhhhheecccc--ccccccceEecc----eeeeecccccceEEEeccCC-------
Confidence 99999887779999999999999999988888774 334566676653 47899999999999999965
Q ss_pred CCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCC
Q 005506 135 NAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ 214 (693)
Q Consensus 135 ~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 214 (693)
.+......+. .|+++..++ ++..+.+++.|.++.++|+|+...+..... .. ..-
T Consensus 333 ---~~~~sv~~gg-~vtSl~ls~-~g~~lLsssRDdtl~viDlRt~eI~~~~sA--------------~g-------~k~ 386 (459)
T KOG0288|consen 333 ---DKTRSVPLGG-RVTSLDLSM-DGLELLSSSRDDTLKVIDLRTKEIRQTFSA--------------EG-------FKC 386 (459)
T ss_pred ---ceeeEeecCc-ceeeEeecc-CCeEEeeecCCCceeeeecccccEEEEeec--------------cc-------ccc
Confidence 4455555544 999999999 666677889999999999998763311100 00 011
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEE
Q 005506 215 TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEV 294 (693)
Q Consensus 215 ~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L 294 (693)
....+.+.|||+ +.|+++|+.||.|+||++.+++....... .+.+..|++++|+|.|.+|
T Consensus 387 asDwtrvvfSpd-~~YvaAGS~dgsv~iW~v~tgKlE~~l~~-------------------s~s~~aI~s~~W~~sG~~L 446 (459)
T KOG0288|consen 387 ASDWTRVVFSPD-GSYVAAGSADGSVYIWSVFTGKLEKVLSL-------------------STSNAAITSLSWNPSGSGL 446 (459)
T ss_pred ccccceeEECCC-CceeeeccCCCcEEEEEccCceEEEEecc-------------------CCCCcceEEEEEcCCCchh
Confidence 223788999997 78999999999999999998764432211 1122259999999999999
Q ss_pred EEEecCCcEEEE
Q 005506 295 LLSYSGEHVYLM 306 (693)
Q Consensus 295 ~sgs~Dg~V~lw 306 (693)
++++.++.+.+|
T Consensus 447 lsadk~~~v~lW 458 (459)
T KOG0288|consen 447 LSADKQKAVTLW 458 (459)
T ss_pred hcccCCcceEec
Confidence 999999999999
No 101
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=6.8e-19 Score=172.21 Aligned_cols=258 Identities=16% Similarity=0.237 Sum_probs=179.0
Q ss_pred ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC----cEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 005506 47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (693)
Q Consensus 47 ~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~----~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vw 122 (693)
.+|.+-|+|+.|.+.|+++|||+.|++|+|||.... .+.... ..|.+.|..|.|.+..-|+.+|+++.|++|.||
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~W-rah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSW-RAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeE-EecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 579999999999999999999999999999996432 344445 689999999999876669999999999999999
Q ss_pred EcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecC-CCcEEEEEeCCCcEEEEeCCCCCCC-------------CCCCC
Q 005506 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-NPHVVWSASEDGTLRQHDFRQGSSC-------------PPAGS 188 (693)
Q Consensus 123 dl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~-~~~~l~Sgs~Dg~V~lwDlr~~~~~-------------~~~~~ 188 (693)
.-...+.+. ....+....++......|++|.|.|. -+-.|++++.||+||||+.-..-.. .+...
T Consensus 89 EE~~~~~~~-~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~ 167 (361)
T KOG2445|consen 89 EEQEKSEEA-HGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK 167 (361)
T ss_pred eeccccccc-ccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence 764322111 11123445667777889999999993 3567899999999999987543211 00001
Q ss_pred CCccc---------------------------ceEEEeccCCc--eeeecCCCCCccceEEEEEcCCCC---cEEEEEeC
Q 005506 189 SHQEC---------------------------RNILLDLRCGA--KRSLADPPKQTLSLKSCDISSTRP---HLLLVGGS 236 (693)
Q Consensus 189 ~~~~~---------------------------~~~l~~~~~~~--~~~l~~~~~~~~~v~sl~~sp~~~---~~Latgs~ 236 (693)
.+..| ...||....+. ...+...++++.+|+.|+|.|.-| ++||+++.
T Consensus 168 ~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~k 247 (361)
T KOG2445|consen 168 NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATK 247 (361)
T ss_pred ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeec
Confidence 11111 12334333332 345566778999999999999654 58999999
Q ss_pred CCcEEEEecCCCC-CCcccccCCCCCCcccccccCcccc-CCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCC
Q 005506 237 DAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSE-HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 237 Dg~IriwD~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~ 310 (693)
|| |+||.+.... ++.. .....+..+..+.-..+.. ..|.. .|+.+.|+-.|..|.+.+.||.|++|..+-
T Consensus 248 Dg-v~I~~v~~~~s~i~~--ee~~~~~~~~~l~v~~vs~~~~H~~-~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 248 DG-VRIFKVKVARSAIEE--EEVLAPDLMTDLPVEKVSELDDHNG-EVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred Cc-EEEEEEeeccchhhh--hcccCCCCccccceEEeeeccCCCC-ceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 99 9999998432 1110 0001111111111111121 33444 799999999999999999999999997654
No 102
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.84 E-value=4.1e-20 Score=197.51 Aligned_cols=202 Identities=26% Similarity=0.408 Sum_probs=168.3
Q ss_pred hcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCC
Q 005506 37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD 116 (693)
Q Consensus 37 i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~D 116 (693)
.....+..+|+||...|.|++...++. |+|||+|.+++||-.. ++...+ .+|...|+++++.|. +.++||+.|
T Consensus 88 ~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~~~l-~gH~asVWAv~~l~e---~~~vTgsaD 160 (745)
T KOG0301|consen 88 LSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELVYSL-QGHTASVWAVASLPE---NTYVTGSAD 160 (745)
T ss_pred cCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch--hhhccc-CCcchheeeeeecCC---CcEEeccCc
Confidence 456678899999999999999988888 9999999999999964 455556 799999999999998 499999999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceE
Q 005506 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (693)
Q Consensus 117 g~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~ 196 (693)
.+|++|.-. +.++++.+|++.|+.+++-| + ..|+|++.||.|++|++.. .
T Consensus 161 KtIklWk~~------------~~l~tf~gHtD~VRgL~vl~-~-~~flScsNDg~Ir~w~~~g-e--------------- 210 (745)
T KOG0301|consen 161 KTIKLWKGG------------TLLKTFSGHTDCVRGLAVLD-D-SHFLSCSNDGSIRLWDLDG-E--------------- 210 (745)
T ss_pred ceeeeccCC------------chhhhhccchhheeeeEEec-C-CCeEeecCCceEEEEeccC-c---------------
Confidence 999999886 55889999999999999998 3 3567999999999999943 2
Q ss_pred EEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCC
Q 005506 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (693)
Q Consensus 197 l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (693)
.+..+.+|...+++++..+. ...+++++.|++++||+.. .|++.+.
T Consensus 211 ----------~l~~~~ghtn~vYsis~~~~-~~~Ivs~gEDrtlriW~~~---------------e~~q~I~-------- 256 (745)
T KOG0301|consen 211 ----------VLLEMHGHTNFVYSISMALS-DGLIVSTGEDRTLRIWKKD---------------ECVQVIT-------- 256 (745)
T ss_pred ----------eeeeeeccceEEEEEEecCC-CCeEEEecCCceEEEeecC---------------ceEEEEe--------
Confidence 23344577888999996665 4699999999999999976 2343331
Q ss_pred CCccceEEEEEcCCCCEEEEEecCCcEEEEECCC
Q 005506 277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 277 ~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~ 310 (693)
++...|+++++-++|. |++|++||.||||....
T Consensus 257 lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 257 LPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred cCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 3333589999999998 68899999999999875
No 103
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=3.4e-20 Score=185.59 Aligned_cols=256 Identities=18% Similarity=0.276 Sum_probs=192.2
Q ss_pred hhhhhcccccCCCCCcCcccccchhhhcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECC------CCcE
Q 005506 11 IYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS------SRKL 84 (693)
Q Consensus 11 ~~~~~~~r~~~~~~~~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~------~~~~ 84 (693)
+...|.+|.+++.+-+.+.++- .+..+.-+.+.+.+|.+||++|.|+.++++||+|++|..++||++. +.++
T Consensus 19 i~~FL~QR~i~~~~~~~k~F~~--~~~~R~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KP 96 (609)
T KOG4227|consen 19 IESFLCQREIGSVKSVVKTFRP--DFQHRPFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKP 96 (609)
T ss_pred eeeeeeecccCCChhhhhhhch--hhhhcchhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCC
Confidence 4678899999988766655554 2344666777889999999999999999999999999999999986 3466
Q ss_pred EEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCC---CCeEEEEEecCCCc
Q 005506 85 LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHT---RRVKKLAVEVGNPH 161 (693)
Q Consensus 85 ~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~---~~V~~la~sp~~~~ 161 (693)
+......|..+|+|++|.-. +.+|++|..+++|..+|+.+. +.+..+. |. +.|+.+..+|. .+
T Consensus 97 I~~~~~~H~SNIF~L~F~~~--N~~~~SG~~~~~VI~HDiEt~----------qsi~V~~-~~~~~~~VY~m~~~P~-DN 162 (609)
T KOG4227|consen 97 IGVMEHPHRSNIFSLEFDLE--NRFLYSGERWGTVIKHDIETK----------QSIYVAN-ENNNRGDVYHMDQHPT-DN 162 (609)
T ss_pred ceeccCccccceEEEEEccC--CeeEecCCCcceeEeeecccc----------eeeeeec-ccCcccceeecccCCC-Cc
Confidence 77666678899999999987 589999999999999999964 3344443 44 48999999996 68
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEE
Q 005506 162 VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFAR 241 (693)
Q Consensus 162 ~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~Ir 241 (693)
+|++.+.+|.|.+||.|...... ..+ -+........++.|+|..+.+|++.+..+-+-
T Consensus 163 ~~~~~t~~~~V~~~D~Rd~~~~~----------~~~------------~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~ 220 (609)
T KOG4227|consen 163 TLIVVTRAKLVSFIDNRDRQNPI----------SLV------------LPANSGKNFYTAEFHPETPALILVNSETGGPN 220 (609)
T ss_pred eEEEEecCceEEEEeccCCCCCC----------cee------------eecCCCccceeeeecCCCceeEEeccccCCCC
Confidence 99999999999999999865220 000 11122345678899999999999999999999
Q ss_pred EEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEe
Q 005506 242 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRY 318 (693)
Q Consensus 242 iwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~ 318 (693)
+||+|+.... .+++ .+.+... .......++.|+|+|..|++--....-.+||+.+..+....+
T Consensus 221 ~~D~R~~~~~-----------~~~~--~~~~~L~-~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~ 283 (609)
T KOG4227|consen 221 VFDRRMQARP-----------VYQR--SMFKGLP-QENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKS 283 (609)
T ss_pred ceeeccccch-----------HHhh--hccccCc-ccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEec
Confidence 9999975310 0110 0111110 111236789999999999888777778889999865544444
No 104
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.84 E-value=8.8e-20 Score=177.10 Aligned_cols=227 Identities=15% Similarity=0.249 Sum_probs=171.0
Q ss_pred ccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEECCCCc----------EEE----EeccCCCcceEEEEEeeCCCCCEEE
Q 005506 47 EGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRK----------LLH----SIETGHSANVFCTKFVPETSDELVV 111 (693)
Q Consensus 47 ~gH~~~V~~l~~s~-~g~~LaSgs~Dg~I~IWd~~~~~----------~~~----~l~~~h~~~I~sv~f~p~~~~~~l~ 111 (693)
+-|.|.||+|...+ .|+++++|+.||.|.|||++.-. .+. .-..+|.-.|.++.|-|-. ..+|.
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~D-tGmFt 118 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPID-TGMFT 118 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeec-Cceee
Confidence 46999999999998 68999999999999999997432 111 1135788999999999984 56999
Q ss_pred EEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCC--CcEEEEEeCCCcEEEEeCCCCCCCCCCCCC
Q 005506 112 SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN--PHVVWSASEDGTLRQHDFRQGSSCPPAGSS 189 (693)
Q Consensus 112 sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~--~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~ 189 (693)
+++.|.+++|||.++. +....|+ ..+.|++-+++|.. -.++++|..|-.|++.|+.++...
T Consensus 119 ssSFDhtlKVWDtnTl----------Q~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s------ 181 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTL----------QEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS------ 181 (397)
T ss_pred cccccceEEEeecccc----------eeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcce------
Confidence 9999999999999975 2233443 56778888888843 347778888889999999887522
Q ss_pred CcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC-CCcccccCC-CCCCccccc
Q 005506 190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRM-SPPPCVNYF 267 (693)
Q Consensus 190 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~-~~~~~~~~~-~~~~~~~~~ 267 (693)
....+|...|.++.|+|.....|++|+.||.||+||+|... .+..+.... ..++.++ -
T Consensus 182 -------------------H~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~-~ 241 (397)
T KOG4283|consen 182 -------------------HTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILK-T 241 (397)
T ss_pred -------------------eeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccc-c
Confidence 12236778899999999887889999999999999999652 122221111 1111121 1
Q ss_pred ccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEe
Q 005506 268 CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRY 318 (693)
Q Consensus 268 ~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~ 318 (693)
...|.+ .|+.++|+.+|.++++.+.|..+++|+..++......+
T Consensus 242 ------n~ah~g-kvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~ 285 (397)
T KOG4283|consen 242 ------NTAHYG-KVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREF 285 (397)
T ss_pred ------cccccc-eeeeeeecccchhhhhccCccceEEeecccCccccccc
Confidence 122333 69999999999999999999999999999987555444
No 105
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.84 E-value=8.2e-20 Score=204.85 Aligned_cols=239 Identities=15% Similarity=0.205 Sum_probs=190.2
Q ss_pred CCCcEEEEEECCCCCEEEEEe--CCCcEEEEECCC------------CcEEEEeccCCCcceEEEEEeeCCCCCEEEEEe
Q 005506 49 HQGCVNAISWNSKGSLLISGS--DDTHINVWSYSS------------RKLLHSIETGHSANVFCTKFVPETSDELVVSGA 114 (693)
Q Consensus 49 H~~~V~~l~~s~~g~~LaSgs--~Dg~I~IWd~~~------------~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs 114 (693)
|...|.++..+|+|..+|||+ .|+.++||+... .+.+.++ ..|.+.|.|+.|+|+ |.+||+|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m-~~h~~sv~CVR~S~d--G~~lAsGS 88 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTM-DDHDGSVNCVRFSPD--GSYLASGS 88 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheee-ccccCceeEEEECCC--CCeEeecc
Confidence 456799999999999999999 999999998652 2344455 689999999999999 79999999
Q ss_pred CCCcEEEEEcCC-CC-------CCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCC
Q 005506 115 GDAEVRLFNLSR-FS-------GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA 186 (693)
Q Consensus 115 ~Dg~V~vwdl~~-~~-------~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~ 186 (693)
.|+.|.||.-.. +. +.......++.+..+.+|...|..++|+| +..+|++++.|++|.+|+.++.+.
T Consensus 89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~---- 163 (942)
T KOG0973|consen 89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFEL---- 163 (942)
T ss_pred CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEcccccee----
Confidence 999999999873 11 11223445677889999999999999999 779999999999999999988642
Q ss_pred CCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccc
Q 005506 187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266 (693)
Q Consensus 187 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~ 266 (693)
+....+|...|..+.|.|. |++||+-+.|++|++|.+.+....+.+..+.. .+
T Consensus 164 ---------------------~~vl~~H~s~VKGvs~DP~-Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~--~~--- 216 (942)
T KOG0973|consen 164 ---------------------LKVLRGHQSLVKGVSWDPI-GKYFASQSDDRTLKVWRTSDWGIEKSITKPFE--ES--- 216 (942)
T ss_pred ---------------------eeeeecccccccceEECCc-cCeeeeecCCceEEEEEcccceeeEeeccchh--hC---
Confidence 2333467888999999998 79999999999999999776443332211110 00
Q ss_pred cccCccccCCCCccceEEEEEcCCCCEEEEEec----CCcEEEEECCCCCcceEEeecCCCceeEEeccC
Q 005506 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS----GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT 332 (693)
Q Consensus 267 ~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~----Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~ 332 (693)
.....+..+.|||||.+|++... -.++.|.+-.+.+....+.+|..+.+++.|+|.
T Consensus 217 ----------~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~ 276 (942)
T KOG0973|consen 217 ----------PLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPK 276 (942)
T ss_pred ----------CCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChH
Confidence 01114788999999999998765 347889998888777888888899999999996
No 106
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=8.5e-20 Score=186.43 Aligned_cols=210 Identities=21% Similarity=0.306 Sum_probs=167.4
Q ss_pred ccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcC
Q 005506 47 EGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (693)
Q Consensus 47 ~gH~~~V~~l~~s~~-g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~ 125 (693)
.||++.|.+|.|+.. .+.|||||.|.+|++||+.++++..++ ..|.+.|.+++|+|.. ..+|++|+.|++|.+.|.+
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~-~~~~k~Vq~l~wh~~~-p~~LLsGs~D~~V~l~D~R 317 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSI-THHGKKVQTLEWHPYE-PSVLLSGSYDGTVALKDCR 317 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceeh-hhcCCceeEEEecCCC-ceEEEeccccceEEeeecc
Confidence 389999999999985 569999999999999999999999999 6899999999999997 7899999999999999999
Q ss_pred CCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCce
Q 005506 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (693)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (693)
..+ ..-..++ -.+.|-.++|.|..++.|+++..||+|+-+|+|....+
T Consensus 318 ~~~---------~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~---------------------- 365 (463)
T KOG0270|consen 318 DPS---------NSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKP---------------------- 365 (463)
T ss_pred Ccc---------ccCceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCc----------------------
Confidence 532 1122333 35789999999999999999999999999999987522
Q ss_pred eeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEE
Q 005506 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV 285 (693)
Q Consensus 206 ~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v 285 (693)
++....|..+|.++++++..+.++++++.|+.|++|++....+-... .+.-.-....|.
T Consensus 366 --vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~-------------------~~~~~~~rl~c~ 424 (463)
T KOG0270|consen 366 --VWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVK-------------------EHSFKLGRLHCF 424 (463)
T ss_pred --eeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccc-------------------cccccccceeec
Confidence 33334677899999999999999999999999999998754321100 000001124566
Q ss_pred EEcCCCCE-EEEEecCCcEEEEECCCC
Q 005506 286 TFSPNGEE-VLLSYSGEHVYLMDVNHA 311 (693)
Q Consensus 286 ~fspdg~~-L~sgs~Dg~V~lwdl~~~ 311 (693)
++.|+-.+ |+.|+..+.++|||+.+.
T Consensus 425 ~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 425 ALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred ccCCCcceEEEecCccceEEEeecccC
Confidence 77777654 556666778999999884
No 107
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.83 E-value=1.4e-19 Score=194.69 Aligned_cols=210 Identities=19% Similarity=0.336 Sum_probs=172.1
Q ss_pred ceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC-------CcEEEEec----cCCCcceEEEEEeeCCCCCE
Q 005506 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS-------RKLLHSIE----TGHSANVFCTKFVPETSDEL 109 (693)
Q Consensus 41 ~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~-------~~~~~~l~----~~h~~~I~sv~f~p~~~~~~ 109 (693)
.+..+.+.|.+.|++|+.+||+..++|||.|.+|++||..- .+.+..+. ..-...|.|++++|+ +.+
T Consensus 445 ~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spd--gk~ 522 (888)
T KOG0306|consen 445 SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPD--GKL 522 (888)
T ss_pred hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCC--CcE
Confidence 34556679999999999999999999999999999999741 11111111 123578999999999 799
Q ss_pred EEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCC
Q 005506 110 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS 189 (693)
Q Consensus 110 l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~ 189 (693)
|+.+-.|.+|+||-+.+. +....+-+|.-+|.|+.++| ++++++|||.|..|++|-+.-+.
T Consensus 523 LaVsLLdnTVkVyflDtl----------KFflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFGD-------- 583 (888)
T KOG0306|consen 523 LAVSLLDNTVKVYFLDTL----------KFFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFGD-------- 583 (888)
T ss_pred EEEEeccCeEEEEEecce----------eeeeeecccccceeEEeccC-CcCeEEeccCCCceEEeccccch--------
Confidence 999999999999999864 55667889999999999999 77999999999999999887654
Q ss_pred CcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCccccccc
Q 005506 190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP 269 (693)
Q Consensus 190 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~ 269 (693)
|.. ....|...|.++.|-|. .+++.+++.|+.|+-||-.....+ +.+
T Consensus 584 ---CHK--------------S~fAHdDSvm~V~F~P~-~~~FFt~gKD~kvKqWDg~kFe~i-------------q~L-- 630 (888)
T KOG0306|consen 584 ---CHK--------------SFFAHDDSVMSVQFLPK-THLFFTCGKDGKVKQWDGEKFEEI-------------QKL-- 630 (888)
T ss_pred ---hhh--------------hhhcccCceeEEEEccc-ceeEEEecCcceEEeechhhhhhh-------------eee--
Confidence 211 12257788999999995 789999999999999998765433 222
Q ss_pred CccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCC
Q 005506 270 MHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 270 ~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~ 310 (693)
.+|.. .|++++.+|+|.++++++.|..|++|....
T Consensus 631 -----~~H~~-ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 631 -----DGHHS-EVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred -----ccchh-eeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 34544 599999999999999999999999999776
No 108
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.83 E-value=2.5e-19 Score=198.68 Aligned_cols=222 Identities=23% Similarity=0.334 Sum_probs=179.2
Q ss_pred CcCcccccchhhhcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeC
Q 005506 25 DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 104 (693)
Q Consensus 25 ~~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~ 104 (693)
..+.++++|+ ..+..+.++|.||.+.|.|+... +.++++||.|.+|+||++.++.++..+ .+|.++|.+|...
T Consensus 268 S~D~t~rvWd--~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~-~~h~~~V~~v~~~-- 340 (537)
T KOG0274|consen 268 STDKTERVWD--CSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLL-RGHTGPVNCVQLD-- 340 (537)
T ss_pred ecCCcEEeEe--cCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEe-ccccccEEEEEec--
Confidence 3468899998 89999999999999999999875 457889999999999999999999998 6799999999997
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCC
Q 005506 105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP 184 (693)
Q Consensus 105 ~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~ 184 (693)
+.++++|+.|++|+|||+... +++.++.+|..+|+++.+.+ . ..+++|+.|++|++||+++...|
T Consensus 341 --~~~lvsgs~d~~v~VW~~~~~----------~cl~sl~gH~~~V~sl~~~~-~-~~~~Sgs~D~~IkvWdl~~~~~c- 405 (537)
T KOG0274|consen 341 --EPLLVSGSYDGTVKVWDPRTG----------KCLKSLSGHTGRVYSLIVDS-E-NRLLSGSLDTTIKVWDLRTKRKC- 405 (537)
T ss_pred --CCEEEEEecCceEEEEEhhhc----------eeeeeecCCcceEEEEEecC-c-ceEEeeeeccceEeecCCchhhh-
Confidence 369999999999999999965 77999999999999998865 2 78889999999999999987322
Q ss_pred CCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcc
Q 005506 185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV 264 (693)
Q Consensus 185 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~ 264 (693)
+.....|...+.++.+. +++|++++.|+.|++||...+..+..+
T Consensus 406 -----------------------~~tl~~h~~~v~~l~~~---~~~Lvs~~aD~~Ik~WD~~~~~~~~~~---------- 449 (537)
T KOG0274|consen 406 -----------------------IHTLQGHTSLVSSLLLR---DNFLVSSSADGTIKLWDAEEGECLRTL---------- 449 (537)
T ss_pred -----------------------hhhhcCCcccccccccc---cceeEeccccccEEEeecccCceeeee----------
Confidence 22223344445445443 469999999999999999887544332
Q ss_pred cccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceE
Q 005506 265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM 316 (693)
Q Consensus 265 ~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~ 316 (693)
.++....|+.+.+. ...+++++.|+.+++||+.++.....
T Consensus 450 ----------~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~ 489 (537)
T KOG0274|consen 450 ----------EGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRT 489 (537)
T ss_pred ----------ccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhh
Confidence 11111247777766 56789999999999999999764443
No 109
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1.6e-19 Score=171.45 Aligned_cols=246 Identities=15% Similarity=0.168 Sum_probs=183.8
Q ss_pred eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC---cEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 005506 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR---KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (693)
Q Consensus 46 l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~---~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vw 122 (693)
-.+|.+-|..+...-.|++|||++.|++|+|+..... +++.++ .||.++|+.++|..-..|.+|++++.||.|.||
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L-~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAEL-TGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEe-cCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 3579999999999989999999999999999998754 456677 899999999999753348999999999999999
Q ss_pred EcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCC-CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEecc
Q 005506 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR 201 (693)
Q Consensus 123 dl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~-~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~ 201 (693)
.-..+. +.....+..|...|++|+|.|.+ +-+|++++.||.|.+.+.+....-
T Consensus 86 ke~~g~--------w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w------------------ 139 (299)
T KOG1332|consen 86 KEENGR--------WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGW------------------ 139 (299)
T ss_pred ecCCCc--------hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCc------------------
Confidence 988542 25567778899999999999944 457889999999999998875100
Q ss_pred CCceeeecCCCCCccceEEEEEcCCC-------------CcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccc
Q 005506 202 CGAKRSLADPPKQTLSLKSCDISSTR-------------PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFC 268 (693)
Q Consensus 202 ~~~~~~l~~~~~~~~~v~sl~~sp~~-------------~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~ 268 (693)
..-.....|...|++++|.|.. .+.|++|+.|..|+||+..+..=.. -.++
T Consensus 140 ----~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~-----------e~~l- 203 (299)
T KOG1332|consen 140 ----TTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKL-----------ERTL- 203 (299)
T ss_pred ----cchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhh-----------hhhh-
Confidence 0111122566778888888741 2569999999999999988642100 0011
Q ss_pred cCccccCCCCccceEEEEEcCCC----CEEEEEecCCcEEEEECCCCCcc---eEEeecCCCceeEEeccCCCcccccCC
Q 005506 269 PMHLSEHGRSSLHLTHVTFSPNG----EEVLLSYSGEHVYLMDVNHAGGR---AMRYTVGDASKIMSFTPTLNGLELQPP 341 (693)
Q Consensus 269 ~~~~~~~~~~~~~V~~v~fspdg----~~L~sgs~Dg~V~lwdl~~~~~~---~~~~~~~~~~~~~~~~p~~~g~~~~~~ 341 (693)
.+|.+ .|..++|.|.- .+|++++.||+|.||-......+ .++..-.++.-.+.|++..+-++....
T Consensus 204 ------~~H~d-wVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~G 276 (299)
T KOG1332|consen 204 ------EGHKD-WVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGG 276 (299)
T ss_pred ------hhcch-hhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecC
Confidence 45666 79999999964 57999999999999988742111 112222344566778887776655443
No 110
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.83 E-value=6.3e-20 Score=182.76 Aligned_cols=225 Identities=18% Similarity=0.240 Sum_probs=175.0
Q ss_pred CCcCcccccchhhhcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC----------------------
Q 005506 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS---------------------- 81 (693)
Q Consensus 24 ~~~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~---------------------- 81 (693)
...+..+++|.. ....+..+|+.|.|.|+.|++.. ..++|+++|.+|+.|.+..
T Consensus 85 Gs~DG~VkiWnl--sqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~ 160 (433)
T KOG0268|consen 85 GSCDGEVKIWNL--SQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNS 160 (433)
T ss_pred cccCceEEEEeh--hhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeeccccccccccccccc
Confidence 456788888873 34457889999999999999987 6788999999998887321
Q ss_pred ----------------CcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeecc
Q 005506 82 ----------------RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC 145 (693)
Q Consensus 82 ----------------~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~ 145 (693)
..++..+ .--...|.+++|+|.. ..+|++|+.|+.|.+||++.. .|++...
T Consensus 161 ~FaTcGe~i~IWD~~R~~Pv~sm-swG~Dti~svkfNpvE-TsILas~~sDrsIvLyD~R~~----------~Pl~KVi- 227 (433)
T KOG0268|consen 161 VFATCGEQIDIWDEQRDNPVSSM-SWGADSISSVKFNPVE-TSILASCASDRSIVLYDLRQA----------SPLKKVI- 227 (433)
T ss_pred cccccCceeeecccccCCcccee-ecCCCceeEEecCCCc-chheeeeccCCceEEEecccC----------Cccceee-
Confidence 1123333 2234578899999975 578999999999999999976 3344333
Q ss_pred CCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcC
Q 005506 146 HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS 225 (693)
Q Consensus 146 h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp 225 (693)
-..+-+.|+|+| ....|++|++|-.++.||+|..+.+ +..+.+|...|.+++|||
T Consensus 228 ~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p------------------------~~v~~dhvsAV~dVdfsp 282 (433)
T KOG0268|consen 228 LTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRP------------------------LNVHKDHVSAVMDVDFSP 282 (433)
T ss_pred eeccccceecCc-cccceeeccccccceehhhhhhccc------------------------chhhcccceeEEEeccCC
Confidence 345667899999 8899999999999999999986533 334457788999999999
Q ss_pred CCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEE
Q 005506 226 TRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYL 305 (693)
Q Consensus 226 ~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~l 305 (693)
. |.-+++|+.|.+||||..+.+.....+ +...-..|.+|.||.|.+|+++|+.|+.|+|
T Consensus 283 t-G~EfvsgsyDksIRIf~~~~~~SRdiY--------------------htkRMq~V~~Vk~S~Dskyi~SGSdd~nvRl 341 (433)
T KOG0268|consen 283 T-GQEFVSGSYDKSIRIFPVNHGHSRDIY--------------------HTKRMQHVFCVKYSMDSKYIISGSDDGNVRL 341 (433)
T ss_pred C-cchhccccccceEEEeecCCCcchhhh--------------------hHhhhheeeEEEEeccccEEEecCCCcceee
Confidence 8 789999999999999999865422111 1112225999999999999999999999999
Q ss_pred EECCCC
Q 005506 306 MDVNHA 311 (693)
Q Consensus 306 wdl~~~ 311 (693)
|..+..
T Consensus 342 Wka~As 347 (433)
T KOG0268|consen 342 WKAKAS 347 (433)
T ss_pred eecchh
Confidence 987764
No 111
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=2e-19 Score=194.39 Aligned_cols=231 Identities=15% Similarity=0.213 Sum_probs=178.0
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCc----EEEEecc--CCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 005506 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK----LLHSIET--GHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 123 (693)
Q Consensus 50 ~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~----~~~~l~~--~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwd 123 (693)
....++|..+++-..++.++.. .++||.+.... +...+.. .-...+..|+|... ..++|+|++..|.|.+||
T Consensus 39 k~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~-~~NlIAT~s~nG~i~vWd 116 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQL-YSNLIATCSTNGVISVWD 116 (839)
T ss_pred ccccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccc-hhhhheeecCCCcEEEEe
Confidence 3467788888988888888764 78888776432 2222211 11234567899844 478999999999999999
Q ss_pred cCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCC
Q 005506 124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 203 (693)
Q Consensus 124 l~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (693)
+..... .+.+..|..|+..|.++.|++..+++|+|||.||+|++||+|......
T Consensus 117 lnk~~r-------nk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~------------------- 170 (839)
T KOG0269|consen 117 LNKSIR-------NKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKS------------------- 170 (839)
T ss_pred cCcccc-------chhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccc-------------------
Confidence 996321 145678899999999999999999999999999999999999876331
Q ss_pred ceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceE
Q 005506 204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 283 (693)
Q Consensus 204 ~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 283 (693)
........|..+.|+|..++.|+++...|.+.+||+|... .|...+ ..|.+ +|.
T Consensus 171 ------t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~------------r~~~k~-------~AH~G-pV~ 224 (839)
T KOG0269|consen 171 ------TFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD------------RCEKKL-------TAHNG-PVL 224 (839)
T ss_pred ------cccccchhhhceeeccCCCceEEEecCCceEEEeeccCch------------hHHHHh-------hcccC-ceE
Confidence 1112356789999999989999999999999999999643 444444 34655 799
Q ss_pred EEEEcCCCCEEEEEecCCcEEEEECCCCCc-ceEEeecCCCceeEEeccCCC
Q 005506 284 HVTFSPNGEEVLLSYSGEHVYLMDVNHAGG-RAMRYTVGDASKIMSFTPTLN 334 (693)
Q Consensus 284 ~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~-~~~~~~~~~~~~~~~~~p~~~ 334 (693)
++.|+|++.+|++|+.|++|+|||+.++.. +........++..+.|.|...
T Consensus 225 c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~ 276 (839)
T KOG0269|consen 225 CLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARS 276 (839)
T ss_pred EEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCcc
Confidence 999999999999999999999999996543 344555667778888988754
No 112
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.82 E-value=1.7e-19 Score=180.62 Aligned_cols=228 Identities=18% Similarity=0.267 Sum_probs=169.2
Q ss_pred cccceeEEeccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEECCCCcEEE---EeccCCCcceEEEEEeeCCCCCEEEEE
Q 005506 38 RRLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLH---SIETGHSANVFCTKFVPETSDELVVSG 113 (693)
Q Consensus 38 ~~l~~~~~l~gH~~~V~~l~~s~~-g~~LaSgs~Dg~I~IWd~~~~~~~~---~l~~~h~~~I~sv~f~p~~~~~~l~sg 113 (693)
...+++.++.+|.+.=..|+|||- -..|+||.--+.|++|.+.++.... .+ .+|+..|-.++|+|.. ..+|+||
T Consensus 199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf-~gH~~SVEDLqWSptE-~~vfaSc 276 (440)
T KOG0302|consen 199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPF-TGHTKSVEDLQWSPTE-DGVFASC 276 (440)
T ss_pred cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccc-cccccchhhhccCCcc-CceEEee
Confidence 556789999999999999999993 2358898888899999998875432 23 6899999999999986 6899999
Q ss_pred eCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCccc
Q 005506 114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 193 (693)
Q Consensus 114 s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~ 193 (693)
+.||+|+|||++.... ++....+.|...|+.|.|+-..+ +|++|+.||+++|||+|+-+.-
T Consensus 277 S~DgsIrIWDiRs~~~--------~~~~~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~---------- 337 (440)
T KOG0302|consen 277 SCDGSIRIWDIRSGPK--------KAAVSTKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSG---------- 337 (440)
T ss_pred ecCceEEEEEecCCCc--------cceeEeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCC----------
Confidence 9999999999996532 33444588999999999998555 9999999999999999986521
Q ss_pred ceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccc
Q 005506 194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 273 (693)
Q Consensus 194 ~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (693)
.++..+.-|..+|+++.|+|.....|++++.|..|.|||+..-........... .-++...|.-+.
T Consensus 338 ------------~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~--~~L~dlPpQLLF 403 (440)
T KOG0302|consen 338 ------------QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAA--EGLQDLPPQLLF 403 (440)
T ss_pred ------------CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccc--cchhcCCceeEE
Confidence 234445567889999999999888999999999999999975433211111100 012222222222
Q ss_pred cC-CCCccceEEEEEcCCCC-EEEEEecCCc
Q 005506 274 EH-GRSSLHLTHVTFSPNGE-EVLLSYSGEH 302 (693)
Q Consensus 274 ~~-~~~~~~V~~v~fspdg~-~L~sgs~Dg~ 302 (693)
.+ |.. .|..|.|++.-. +|++.+.||.
T Consensus 404 VHqGQk--e~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 404 VHQGQK--EVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred Eecchh--HhhhheeccCCCCeEEEecccce
Confidence 22 222 478899998765 5555566663
No 113
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=1.3e-20 Score=201.82 Aligned_cols=204 Identities=24% Similarity=0.406 Sum_probs=174.3
Q ss_pred hcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCC
Q 005506 37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD 116 (693)
Q Consensus 37 i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~D 116 (693)
+...-.+..|.+|..+|-||.|+++..+|+.|+.+|+|++||++..+.++++ .+|..++.+|.|+|. +.++++|+.|
T Consensus 57 i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtL-tgh~~~~~sv~f~P~--~~~~a~gStd 133 (825)
T KOG0267|consen 57 IGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTL-TGHLLNITSVDFHPY--GEFFASGSTD 133 (825)
T ss_pred ccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhh-hccccCcceeeeccc--eEEecccccc
Confidence 4555566679999999999999999999999999999999999999999999 899999999999999 6899999999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceE
Q 005506 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (693)
Q Consensus 117 g~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~ 196 (693)
+.+.+||++.. .+.+.+.+|...|..+.|+| ++.+++++++|.++++||++.++.
T Consensus 134 td~~iwD~Rk~----------Gc~~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~agk~-------------- 188 (825)
T KOG0267|consen 134 TDLKIWDIRKK----------GCSHTYKSHTRVVDVLRLSP-DGRWVASGGEDNTVKIWDLTAGKL-------------- 188 (825)
T ss_pred ccceehhhhcc----------CceeeecCCcceeEEEeecC-CCceeeccCCcceeeeeccccccc--------------
Confidence 99999999953 56889999999999999999 779999999999999999988762
Q ss_pred EEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCC
Q 005506 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (693)
Q Consensus 197 l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (693)
+..+..|...+.++.|+|. ..+++.|+.|++|++||+++...+.+.. .
T Consensus 189 -----------~~ef~~~e~~v~sle~hp~-e~Lla~Gs~d~tv~f~dletfe~I~s~~--------------------~ 236 (825)
T KOG0267|consen 189 -----------SKEFKSHEGKVQSLEFHPL-EVLLAPGSSDRTVRFWDLETFEVISSGK--------------------P 236 (825)
T ss_pred -----------ccccccccccccccccCch-hhhhccCCCCceeeeeccceeEEeeccC--------------------C
Confidence 2334456778889999997 5789999999999999999754432221 0
Q ss_pred CCccceEEEEEcCCCCEEEEEecCC
Q 005506 277 RSSLHLTHVTFSPNGEEVLLSYSGE 301 (693)
Q Consensus 277 ~~~~~V~~v~fspdg~~L~sgs~Dg 301 (693)
. ...|.+++|+|+|..+++|....
T Consensus 237 ~-~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 237 E-TDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred c-cCCceeeeecCCceeeecCchhh
Confidence 1 12589999999999888887643
No 114
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.81 E-value=6.1e-19 Score=180.90 Aligned_cols=225 Identities=18% Similarity=0.311 Sum_probs=175.7
Q ss_pred CcCcccccchhhhcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeC
Q 005506 25 DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 104 (693)
Q Consensus 25 ~~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~ 104 (693)
..++.+++|+ .+++++++.+.+|.+.|.+++|-.....|.+++.|+.|+||+++....+.++ .+|.+.|.+|....-
T Consensus 221 g~d~~v~Iw~--~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetl-yGHqd~v~~IdaL~r 297 (479)
T KOG0299|consen 221 GRDRHVQIWD--CDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETL-YGHQDGVLGIDALSR 297 (479)
T ss_pred CCCceEEEec--CcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHH-hCCccceeeechhcc
Confidence 4567788876 6788899999999999999999988889999999999999999988888888 799999999998876
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCC
Q 005506 105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP 184 (693)
Q Consensus 105 ~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~ 184 (693)
++.+-+|+.|+++++|++.. +...++.+|.+.+-|++|-. ...|+||+.||.|.+|++-+.++.-
T Consensus 298 --eR~vtVGgrDrT~rlwKi~e-----------esqlifrg~~~sidcv~~In--~~HfvsGSdnG~IaLWs~~KKkplf 362 (479)
T KOG0299|consen 298 --ERCVTVGGRDRTVRLWKIPE-----------ESQLIFRGGEGSIDCVAFIN--DEHFVSGSDNGSIALWSLLKKKPLF 362 (479)
T ss_pred --cceEEeccccceeEEEeccc-----------cceeeeeCCCCCeeeEEEec--ccceeeccCCceEEEeeecccCcee
Confidence 56777777999999999964 34567888999999999984 4678899999999999998876441
Q ss_pred CCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcc
Q 005506 185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV 264 (693)
Q Consensus 185 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~ 264 (693)
.....|.. ........+..+|++++..|. ..++++|+.+|.||+|-+..+-. .+
T Consensus 363 ~~~~AHgv-------------~~~~~~~~~~~Witsla~i~~-sdL~asGS~~G~vrLW~i~~g~r------------~i 416 (479)
T KOG0299|consen 363 TSRLAHGV-------------IPELDPVNGNFWITSLAVIPG-SDLLASGSWSGCVRLWKIEDGLR------------AI 416 (479)
T ss_pred Eeeccccc-------------cCCccccccccceeeeEeccc-CceEEecCCCCceEEEEecCCcc------------cc
Confidence 11111110 011112233468999999995 78999999999999999876521 12
Q ss_pred cccccCccccCCCCccceEEEEEcCCCCEEEEEec
Q 005506 265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS 299 (693)
Q Consensus 265 ~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~ 299 (693)
+.+....+.+ .|++|+|+++|+.|++|.+
T Consensus 417 ~~l~~ls~~G------fVNsl~f~~sgk~ivagiG 445 (479)
T KOG0299|consen 417 NLLYSLSLVG------FVNSLAFSNSGKRIVAGIG 445 (479)
T ss_pred ceeeeccccc------EEEEEEEccCCCEEEEecc
Confidence 2222222222 6999999999998888876
No 115
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.81 E-value=1.5e-18 Score=177.75 Aligned_cols=260 Identities=16% Similarity=0.197 Sum_probs=183.2
Q ss_pred cccceeEEeccCCCcEEEEEECCCC--CEEEEEeCCCcEEEEECCCCc----EEEEeccCCCcceEEEEEeeCCCCCEEE
Q 005506 38 RRLSQERELEGHQGCVNAISWNSKG--SLLISGSDDTHINVWSYSSRK----LLHSIETGHSANVFCTKFVPETSDELVV 111 (693)
Q Consensus 38 ~~l~~~~~l~gH~~~V~~l~~s~~g--~~LaSgs~Dg~I~IWd~~~~~----~~~~l~~~h~~~I~sv~f~p~~~~~~l~ 111 (693)
..+....+.+-|.+.|++++|+|.. +++|+|..-|+|-+||+.+.. -+..+ .+|.++|.++.|+|.+ ...|+
T Consensus 174 ~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f-~~hs~~Vs~l~F~P~n-~s~i~ 251 (498)
T KOG4328|consen 174 DDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLF-TPHSGPVSGLKFSPAN-TSQIY 251 (498)
T ss_pred ccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEe-ccCCccccceEecCCC-hhhee
Confidence 3444556677899999999999954 689999999999999995322 23334 7899999999999986 67899
Q ss_pred EEeCCCcEEEEEcCCCCCCCC-------------C----------------------CCCCCCceeeccCCCCeEEEEEe
Q 005506 112 SGAGDAEVRLFNLSRFSGRGL-------------D----------------------DNAITPSALYQCHTRRVKKLAVE 156 (693)
Q Consensus 112 sgs~Dg~V~vwdl~~~~~~~~-------------~----------------------~~~~~~~~~~~~h~~~V~~la~s 156 (693)
+.+.||+|++-|++....... + .........+.-|...|..|+++
T Consensus 252 ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~N 331 (498)
T KOG4328|consen 252 SSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALN 331 (498)
T ss_pred eeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecC
Confidence 999999999999875321110 0 00001122334578899999999
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeC
Q 005506 157 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS 236 (693)
Q Consensus 157 p~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~ 236 (693)
|..+.+|+|+|.|++++|||+|.-..... ++...-.|...|.+..|||.++. |+|.+.
T Consensus 332 P~~p~~laT~s~D~T~kIWD~R~l~~K~s---------------------p~lst~~HrrsV~sAyFSPs~gt-l~TT~~ 389 (498)
T KOG4328|consen 332 PVCPWFLATASLDQTAKIWDLRQLRGKAS---------------------PFLSTLPHRRSVNSAYFSPSGGT-LLTTCQ 389 (498)
T ss_pred CCCchheeecccCcceeeeehhhhcCCCC---------------------cceecccccceeeeeEEcCCCCc-eEeecc
Confidence 99999999999999999999997542210 01122256778999999999776 999999
Q ss_pred CCcEEEEecC----CCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCC
Q 005506 237 DAFARLYDRR----MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 237 Dg~IriwD~r----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~ 312 (693)
|..|||||.. ...+...+.+..... .+ .......|.|+..++++|-.-..|-+||-..++
T Consensus 390 D~~IRv~dss~~sa~~~p~~~I~Hn~~t~--------------Rw--lT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 390 DNEIRVFDSSCISAKDEPLGTIPHNNRTG--------------RW--LTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred CCceEEeecccccccCCccceeeccCccc--------------cc--ccchhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence 9999999984 333333222211110 11 124567899999999999988889999988854
Q ss_pred cceEEeec--CCCceeEEeccCCCccc
Q 005506 313 GRAMRYTV--GDASKIMSFTPTLNGLE 337 (693)
Q Consensus 313 ~~~~~~~~--~~~~~~~~~~p~~~g~~ 337 (693)
....+..+ ...+.+..|+|...++.
T Consensus 454 ~v~el~~P~~~tI~~vn~~HP~~~~~~ 480 (498)
T KOG4328|consen 454 MVCELHDPESSTIPSVNEFHPMRDTLA 480 (498)
T ss_pred EeeeccCccccccccceeeccccccee
Confidence 22222221 12344567888766543
No 116
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=2.6e-20 Score=199.58 Aligned_cols=231 Identities=16% Similarity=0.266 Sum_probs=187.1
Q ss_pred eEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 005506 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (693)
Q Consensus 43 ~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vw 122 (693)
.+++..|...|.|+..-..++.+++|+.|-.+-+|.+.....+..+ .+|..+|-||.|++. ..+|++|+.+|+|++|
T Consensus 21 ~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~-~~hespIeSl~f~~~--E~LlaagsasgtiK~w 97 (825)
T KOG0267|consen 21 TREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSL-TGHESPIESLTFDTS--ERLLAAGSASGTIKVW 97 (825)
T ss_pred chhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhee-eccCCcceeeecCcc--hhhhcccccCCceeee
Confidence 3456789999999999778899999999999999999887777777 799999999999998 5899999999999999
Q ss_pred EcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccC
Q 005506 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (693)
Q Consensus 123 dl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~ 202 (693)
|+... +.+.++.||...+.++.|+| -+.++++|+.|+.+.+||+|...+
T Consensus 98 DleeA----------k~vrtLtgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc-------------------- 146 (825)
T KOG0267|consen 98 DLEEA----------KIVRTLTGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRKKGC-------------------- 146 (825)
T ss_pred ehhhh----------hhhhhhhccccCcceeeecc-ceEEeccccccccceehhhhccCc--------------------
Confidence 99964 55789999999999999999 667889999999999999985431
Q ss_pred CceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccce
Q 005506 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL 282 (693)
Q Consensus 203 ~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 282 (693)
.....+|...+.++.|+|+ |.+++.|+.|..|+|||++.++....| .+|.. .|
T Consensus 147 -----~~~~~s~~~vv~~l~lsP~-Gr~v~~g~ed~tvki~d~~agk~~~ef--------------------~~~e~-~v 199 (825)
T KOG0267|consen 147 -----SHTYKSHTRVVDVLRLSPD-GRWVASGGEDNTVKIWDLTAGKLSKEF--------------------KSHEG-KV 199 (825)
T ss_pred -----eeeecCCcceeEEEeecCC-CceeeccCCcceeeeeccccccccccc--------------------ccccc-cc
Confidence 1122245667899999997 799999999999999999887654433 23443 58
Q ss_pred EEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCC
Q 005506 283 THVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN 334 (693)
Q Consensus 283 ~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~ 334 (693)
.++.|+|..-.++.|+.|++|++||+.+-......-.....+....|+|+..
T Consensus 200 ~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~ 251 (825)
T KOG0267|consen 200 QSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGK 251 (825)
T ss_pred cccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCce
Confidence 8899999999999999999999999996221111111123456667777644
No 117
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.81 E-value=5.2e-19 Score=188.72 Aligned_cols=259 Identities=14% Similarity=0.164 Sum_probs=206.9
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEee-CCCCCEEEEEeCCCcEEEEEcCC
Q 005506 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP-ETSDELVVSGAGDAEVRLFNLSR 126 (693)
Q Consensus 48 gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p-~~~~~~l~sgs~Dg~V~vwdl~~ 126 (693)
+-.-.|.+|+.+|+|++||+|..-|+++||++..-..+..+ ..|...|.|+.|+. .....+|++++.|.-|+|||+..
T Consensus 457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~-eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r 535 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFM-EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR 535 (1080)
T ss_pred CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhhe-ecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc
Confidence 34567999999999999999999999999999988888888 79999999999984 33247899999999999999986
Q ss_pred CCCCCCCCCCCCCceeeccCCCCeEEEEEecCCC-cEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCce
Q 005506 127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP-HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (693)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~-~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (693)
. +.++.++.+|+..|+++.|.-.+. ..+++++.|+.|.+--.+.... ..++-..
T Consensus 536 n---------y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~------------g~~f~r~---- 590 (1080)
T KOG1408|consen 536 N---------YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASS------------GRLFPRH---- 590 (1080)
T ss_pred c---------cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccC------------ceecccc----
Confidence 4 367889999999999999987443 4678999999986433322110 0111000
Q ss_pred eeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEE
Q 005506 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV 285 (693)
Q Consensus 206 ~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v 285 (693)
........++.+++.|. .+++++++.|..|||||+.+++..+.|... ++|.+ ....|
T Consensus 591 ----t~t~~ktTlYDm~Vdp~-~k~v~t~cQDrnirif~i~sgKq~k~FKgs-----------------~~~eG-~lIKv 647 (1080)
T KOG1408|consen 591 ----TQTLSKTTLYDMAVDPT-SKLVVTVCQDRNIRIFDIESGKQVKSFKGS-----------------RDHEG-DLIKV 647 (1080)
T ss_pred ----ccccccceEEEeeeCCC-cceEEEEecccceEEEeccccceeeeeccc-----------------ccCCC-ceEEE
Confidence 01122456889999997 689999999999999999998776655321 33444 46789
Q ss_pred EEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCcccccCCcccccccccccccc
Q 005506 286 TFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGE 355 (693)
Q Consensus 286 ~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~ 355 (693)
...|.|-||++++.|.++.+||+.++++....+.|.+.++.+.|.++-+.+-.....++++++..+..+.
T Consensus 648 ~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~mi 717 (1080)
T KOG1408|consen 648 ILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLTMI 717 (1080)
T ss_pred EECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECchhHh
Confidence 9999999999999999999999999999999999999999999999988877777788888776655433
No 118
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.81 E-value=1.3e-18 Score=186.09 Aligned_cols=222 Identities=17% Similarity=0.212 Sum_probs=184.5
Q ss_pred CcccccchhhhcccceeEEeccCCCcEEE-EEECC-CCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeC
Q 005506 27 NHSLQMHSSLVRRLSQERELEGHQGCVNA-ISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 104 (693)
Q Consensus 27 ~~~l~~~~~~i~~l~~~~~l~gH~~~V~~-l~~s~-~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~ 104 (693)
+.++++|..--+.+...+.+++|.+.|.+ +++-+ ++-+|++|+.|++|.+|.+.+..++..+ .+|..+|.|+....+
T Consensus 34 d~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~L-kgH~snVC~ls~~~~ 112 (745)
T KOG0301|consen 34 DGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTL-KGHKSNVCSLSIGED 112 (745)
T ss_pred CCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhh-hccccceeeeecCCc
Confidence 56688888877777778889999999998 99986 4557999999999999999999999999 799999999997766
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCC
Q 005506 105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP 184 (693)
Q Consensus 105 ~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~ 184 (693)
+ .++||+-|.++++|.+. +....+.+|...|.+++..|.+ .++||+.|.+|++|.-.+.
T Consensus 113 --~-~~iSgSWD~TakvW~~~------------~l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~~~~---- 171 (745)
T KOG0301|consen 113 --G-TLISGSWDSTAKVWRIG------------ELVYSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKGGTL---- 171 (745)
T ss_pred --C-ceEecccccceEEecch------------hhhcccCCcchheeeeeecCCC--cEEeccCcceeeeccCCch----
Confidence 3 49999999999999988 4466789999999999999844 7889999999999986332
Q ss_pred CCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcc
Q 005506 185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV 264 (693)
Q Consensus 185 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~ 264 (693)
+....+|...|..+++-|+ ..|+++++||.|++|++. + .|+
T Consensus 172 -----------------------l~tf~gHtD~VRgL~vl~~--~~flScsNDg~Ir~w~~~-g-------------e~l 212 (745)
T KOG0301|consen 172 -----------------------LKTFSGHTDCVRGLAVLDD--SHFLSCSNDGSIRLWDLD-G-------------EVL 212 (745)
T ss_pred -----------------------hhhhccchhheeeeEEecC--CCeEeecCCceEEEEecc-C-------------cee
Confidence 2334468888999999986 479999999999999994 3 334
Q ss_pred cccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEee
Q 005506 265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYT 319 (693)
Q Consensus 265 ~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~ 319 (693)
..+ ++|.+ .|.+++..+++..+++++.|+++++|+.. ++.+.+..
T Consensus 213 ~~~-------~ghtn-~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~l 257 (745)
T KOG0301|consen 213 LEM-------HGHTN-FVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITL 257 (745)
T ss_pred eee-------eccce-EEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEec
Confidence 333 56777 59999988899999999999999999988 33444443
No 119
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.7e-18 Score=169.67 Aligned_cols=260 Identities=12% Similarity=0.152 Sum_probs=164.6
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCC
Q 005506 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL 132 (693)
Q Consensus 53 V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~ 132 (693)
-+|+.|++.|.+||+|..||.|.|||+.|...-+.+ .+|..+|+|++|+++ |++|+|++.|..|.+||+..++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~l-saH~~pi~sl~WS~d--gr~LltsS~D~si~lwDl~~gs---- 98 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARML-SAHVRPITSLCWSRD--GRKLLTSSRDWSIKLWDLLKGS---- 98 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhh-hccccceeEEEecCC--CCEeeeecCCceeEEEeccCCC----
Confidence 789999999999999999999999999998766666 899999999999999 7999999999999999999753
Q ss_pred CCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCC--CCCCC-----------CCCCcccceEEEe
Q 005506 133 DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS--SCPPA-----------GSSHQECRNILLD 199 (693)
Q Consensus 133 ~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~--~~~~~-----------~~~~~~~~~~l~~ 199 (693)
+++.+. ..++|....|+|.+.+.+++.-.+..-.+-++..+. ..+.. ...+..+..++..
T Consensus 99 ------~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitG 171 (405)
T KOG1273|consen 99 ------PLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITG 171 (405)
T ss_pred ------ceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEe
Confidence 333333 345666666666554444443333322222222111 00000 0000111111111
Q ss_pred ccCCce--------eeecCCCCC-ccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccC
Q 005506 200 LRCGAK--------RSLADPPKQ-TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM 270 (693)
Q Consensus 200 ~~~~~~--------~~l~~~~~~-~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~ 270 (693)
...|.. ..+...... ...|+.+.++-. +..|++-+.|..||.|+++..-....-. . +...+.++..
T Consensus 172 tsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~-g~~liiNtsDRvIR~ye~~di~~~~r~~---e-~e~~~K~qDv 246 (405)
T KOG1273|consen 172 TSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRK-GRFLIINTSDRVIRTYEISDIDDEGRDG---E-VEPEHKLQDV 246 (405)
T ss_pred cCcceEEEEecchheeeeeeeechheeeeEEEEecc-CcEEEEecCCceEEEEehhhhcccCccC---C-cChhHHHHHH
Confidence 111111 111111111 246788888875 7899999999999999998543211000 0 0001111000
Q ss_pred ccccCCCCccceEEEEEcCCCCEEEEEec-CCcEEEEECCCCCcceEEeecC-CCceeEEeccCCCccc
Q 005506 271 HLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGRAMRYTVG-DASKIMSFTPTLNGLE 337 (693)
Q Consensus 271 ~~~~~~~~~~~V~~v~fspdg~~L~sgs~-Dg~V~lwdl~~~~~~~~~~~~~-~~~~~~~~~p~~~g~~ 337 (693)
-......+++||.+|.|+++++. -..+|||.-..|....++.+.. .....+.|+|...-+.
T Consensus 247 ------VNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~ 309 (405)
T KOG1273|consen 247 ------VNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIA 309 (405)
T ss_pred ------HhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeee
Confidence 01124678999999999998886 5789999999988777776654 5556677888765543
No 120
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=2.5e-17 Score=154.41 Aligned_cols=246 Identities=17% Similarity=0.297 Sum_probs=176.1
Q ss_pred cccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC--------------cEEEEeccCCCcceEEEEEee
Q 005506 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR--------------KLLHSIETGHSANVFCTKFVP 103 (693)
Q Consensus 38 ~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~--------------~~~~~l~~~h~~~I~sv~f~p 103 (693)
..+..+.+|+ .+..|.+++|+|.|.+.|+|+..++.+|-.+..- ..+..-...|.+.|.|++|+|
T Consensus 21 ~~f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~ 99 (350)
T KOG0641|consen 21 KHFEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP 99 (350)
T ss_pred cceEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC
Confidence 3345566665 4678999999999999999999999998754321 122222246899999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEec---CCCcEEEEEeC-CCcEEEEeCCC
Q 005506 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV---GNPHVVWSASE-DGTLRQHDFRQ 179 (693)
Q Consensus 104 ~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp---~~~~~l~Sgs~-Dg~V~lwDlr~ 179 (693)
. |++|+||+.|.+|++..++...... ..+...+.-|.+.|..++|.. .++.+|++++. |-.|++-|...
T Consensus 100 ~--geliatgsndk~ik~l~fn~dt~~~-----~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~ 172 (350)
T KOG0641|consen 100 C--GELIATGSNDKTIKVLPFNADTCNA-----TGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGR 172 (350)
T ss_pred c--cCeEEecCCCceEEEEecccccccc-----cCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCC
Confidence 9 7999999999999998887543221 234556778999999999964 24457777654 55566666655
Q ss_pred CCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEE-EEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCC
Q 005506 180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC-DISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRM 258 (693)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl-~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~ 258 (693)
++.. ....+|+.-|.++ .|+ +.++++|+.|.+||+||+|-..
T Consensus 173 g~~~-------------------------~a~sghtghilalyswn---~~m~~sgsqdktirfwdlrv~~--------- 215 (350)
T KOG0641|consen 173 GQGF-------------------------HALSGHTGHILALYSWN---GAMFASGSQDKTIRFWDLRVNS--------- 215 (350)
T ss_pred CCcc-------------------------eeecCCcccEEEEEEec---CcEEEccCCCceEEEEeeeccc---------
Confidence 5422 1222444444443 343 5799999999999999999653
Q ss_pred CCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCC
Q 005506 259 SPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL 333 (693)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~ 333 (693)
|+++.-.. ....|-....|..|+..|.|+.|++|-.|....+||++.+...+.++.+...++.+.|+|..
T Consensus 216 ----~v~~l~~~-~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a 285 (350)
T KOG0641|consen 216 ----CVNTLDND-FHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGA 285 (350)
T ss_pred ----eeeeccCc-ccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCc
Confidence 33322111 11123334579999999999999999999999999999977666677777778888888863
No 121
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.80 E-value=2.9e-19 Score=169.91 Aligned_cols=254 Identities=15% Similarity=0.182 Sum_probs=198.2
Q ss_pred EEeccCCCcEEEEEECC---CCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 005506 44 RELEGHQGCVNAISWNS---KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (693)
Q Consensus 44 ~~l~gH~~~V~~l~~s~---~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~ 120 (693)
.+..||+.+|-.|+|+| +|-+|++++.|+.=.+-+-+++..+.++ .+|.+.|++.....+ -..-++++.|-+-+
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtf-eghkgavw~~~l~~n--a~~aasaaadftak 84 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTF-EGHKGAVWSATLNKN--ATRAASAAADFTAK 84 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEee-eccCcceeeeecCch--hhhhhhhcccchhh
Confidence 35679999999999997 8999999999999999999999999999 799999999999877 46788999999999
Q ss_pred EEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEec
Q 005506 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (693)
Q Consensus 121 vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~ 200 (693)
|||.-++ ..+..+. |..-|+.++|+. +.+.|+||+.+..+|+||+...+.++.
T Consensus 85 vw~a~tg----------delhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~--------------- 137 (334)
T KOG0278|consen 85 VWDAVTG----------DELHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPK--------------- 137 (334)
T ss_pred hhhhhhh----------hhhhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCch---------------
Confidence 9999865 3466665 999999999998 667888999999999999988764422
Q ss_pred cCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccc------------
Q 005506 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFC------------ 268 (693)
Q Consensus 201 ~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~------------ 268 (693)
...+|...|..+-|... .+.|++++.|++||+||.|+++.+.++..+... ..+....
T Consensus 138 ---------E~~ghtg~Ir~v~wc~e-D~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~V-tSlEvs~dG~ilTia~gss 206 (334)
T KOG0278|consen 138 ---------EISGHTGGIRTVLWCHE-DKCILSSADDKTVRLWDHRTGTEVQSLEFNSPV-TSLEVSQDGRILTIAYGSS 206 (334)
T ss_pred ---------hhcCCCCcceeEEEecc-CceEEeeccCCceEEEEeccCcEEEEEecCCCC-cceeeccCCCEEEEecCce
Confidence 23356778888889876 478888899999999999999877666543221 1111111
Q ss_pred -----cCcccc--CCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEE-eecCCCceeEEeccCCCcccc
Q 005506 269 -----PMHLSE--HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMR-YTVGDASKIMSFTPTLNGLEL 338 (693)
Q Consensus 269 -----~~~~~~--~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~-~~~~~~~~~~~~~p~~~g~~~ 338 (693)
+.++.. ...-...|.+...+|+-..+++|+.|..+|.||..+++..-.. -.+..++..+.|+|+...-+.
T Consensus 207 V~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAs 284 (334)
T KOG0278|consen 207 VKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYAS 284 (334)
T ss_pred eEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeec
Confidence 001100 0111235888999999999999999999999999998765553 456667888899998654433
No 122
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.80 E-value=3e-18 Score=181.80 Aligned_cols=256 Identities=18% Similarity=0.292 Sum_probs=173.6
Q ss_pred EEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEE-eccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 005506 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHS-IETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (693)
Q Consensus 44 ~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~-l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vw 122 (693)
+....|-+.|..+.|-|...+|++++.|.++++||+.+.+++.. +..+|.+.|.+++|.|.. ...|++|+.||.|.||
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n-~~vF~tGgRDg~illW 172 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTN-PAVFCTGGRDGEILLW 172 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCC-CcceeeccCCCcEEEE
Confidence 44567999999999999777999999999999999999888765 237999999999999996 6899999999999999
Q ss_pred EcCCCCCCCC-----------CC------CCCCCceeeccCCCC----eEEEEEecCCCcEEEEEeC-CCcEEEEeCCCC
Q 005506 123 NLSRFSGRGL-----------DD------NAITPSALYQCHTRR----VKKLAVEVGNPHVVWSASE-DGTLRQHDFRQG 180 (693)
Q Consensus 123 dl~~~~~~~~-----------~~------~~~~~~~~~~~h~~~----V~~la~sp~~~~~l~Sgs~-Dg~V~lwDlr~~ 180 (693)
|++....... .. ...+-+.....|... |+.+.| . +...|+|+|. |+.|++||+|..
T Consensus 173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f-k-De~tlaSaga~D~~iKVWDLRk~ 250 (720)
T KOG0321|consen 173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF-K-DESTLASAGAADSTIKVWDLRKN 250 (720)
T ss_pred EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEE-e-ccceeeeccCCCcceEEEeeccc
Confidence 9985331100 00 001112233344444 444555 4 6678888888 999999999987
Q ss_pred CCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCC
Q 005506 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP 260 (693)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~ 260 (693)
...-..... ....+.........+.++..... |.+|.+.|.|+.|++|+++....- |
T Consensus 251 ~~~~r~ep~--------------~~~~~~t~skrs~G~~nL~lDss-Gt~L~AsCtD~sIy~ynm~s~s~s--------P 307 (720)
T KOG0321|consen 251 YTAYRQEPR--------------GSDKYPTHSKRSVGQVNLILDSS-GTYLFASCTDNSIYFYNMRSLSIS--------P 307 (720)
T ss_pred ccccccCCC--------------cccCccCcccceeeeEEEEecCC-CCeEEEEecCCcEEEEeccccCcC--------c
Confidence 643111110 00011111223456788888887 567777777999999999975421 1
Q ss_pred CCcccccccCccccCCCCccc-eEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEee-cCCCceeEEeccCCCc
Q 005506 261 PPCVNYFCPMHLSEHGRSSLH-LTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYT-VGDASKIMSFTPTLNG 335 (693)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~-V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~-~~~~~~~~~~~p~~~g 335 (693)
..+ | .++.... -..-..+|++.+|++|+.|+.+|+|.+.+.+.+...+. +...+..++|.|....
T Consensus 308 ~~~---~-------sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t 374 (720)
T KOG0321|consen 308 VAE---F-------SGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATT 374 (720)
T ss_pred hhh---c-------cCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCC
Confidence 111 1 1111111 12335689999999999999999999999776655443 3334555667775443
No 123
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.80 E-value=3.4e-18 Score=163.90 Aligned_cols=224 Identities=15% Similarity=0.257 Sum_probs=179.5
Q ss_pred CCcCcccccchhhhcccceeEEeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEe
Q 005506 24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102 (693)
Q Consensus 24 ~~~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~-~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~ 102 (693)
..+++.+.+|.....++...-..+||++.|-.++|+| +..+|++++.|.+|++||..++++...+. ...++ .-+.|+
T Consensus 38 gs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~-~~~en-i~i~ws 115 (313)
T KOG1407|consen 38 GSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIE-TKGEN-INITWS 115 (313)
T ss_pred cccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEee-ccCcc-eEEEEc
Confidence 5677888888877777777778899999999999998 56799999999999999999999999883 33344 457899
Q ss_pred eCCCCCEEEEEeCCCcEEEEEcCCCCCCC-------------------------------CCCCCCCCceeeccCCCCeE
Q 005506 103 PETSDELVVSGAGDAEVRLFNLSRFSGRG-------------------------------LDDNAITPSALYQCHTRRVK 151 (693)
Q Consensus 103 p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~-------------------------------~~~~~~~~~~~~~~h~~~V~ 151 (693)
|+ |.+++.+..|..|...|.++..... +.-...+++..+++|.....
T Consensus 116 p~--g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCi 193 (313)
T KOG1407|consen 116 PD--GEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCI 193 (313)
T ss_pred CC--CCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceE
Confidence 98 7999999999999999987532110 11234578889999999999
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEE
Q 005506 152 KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLL 231 (693)
Q Consensus 152 ~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~L 231 (693)
||.|.| .+.+|++|+.|..|.+||+...- |.. ..+...-+|..++||-+ +++|
T Consensus 194 cI~f~p-~GryfA~GsADAlvSLWD~~ELi-----------C~R--------------~isRldwpVRTlSFS~d-g~~l 246 (313)
T KOG1407|consen 194 CIEFDP-DGRYFATGSADALVSLWDVDELI-----------CER--------------CISRLDWPVRTLSFSHD-GRML 246 (313)
T ss_pred EEEECC-CCceEeeccccceeeccChhHhh-----------hhe--------------eeccccCceEEEEeccC-ccee
Confidence 999999 77999999999999999987632 111 12234568999999997 7999
Q ss_pred EEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecC
Q 005506 232 LVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG 300 (693)
Q Consensus 232 atgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~D 300 (693)
|+|+.|-.|-|=+..++..+..++ ...+...|+|+|....|+-++.|
T Consensus 247 ASaSEDh~IDIA~vetGd~~~eI~----------------------~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 247 ASASEDHFIDIAEVETGDRVWEIP----------------------CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred eccCccceEEeEecccCCeEEEee----------------------ccCCceeEEecCCCceeeEEecC
Confidence 999999999999998887554331 12257889999999999877764
No 124
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.80 E-value=5.8e-18 Score=165.41 Aligned_cols=218 Identities=18% Similarity=0.278 Sum_probs=148.8
Q ss_pred EEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 005506 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 123 (693)
Q Consensus 44 ~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwd 123 (693)
+....|.++|.+++|+.+|+.+++|+.|+.+++||+.+++... + ..|.++|.++.|.+...-..|+||+-|.+|+.||
T Consensus 66 ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~-v-~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD 143 (347)
T KOG0647|consen 66 KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQ-V-AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWD 143 (347)
T ss_pred hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeee-e-eecccceeEEEEecCCCcceeEecccccceeecc
Confidence 4456799999999999999999999999999999999995554 4 5799999999999875345899999999999999
Q ss_pred cCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCC-----------------
Q 005506 124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA----------------- 186 (693)
Q Consensus 124 l~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~----------------- 186 (693)
.+.. .++.++. -..+|+++..-. .+++.+..+..|.+|+++.+......
T Consensus 144 ~R~~----------~pv~t~~-LPeRvYa~Dv~~---pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d 209 (347)
T KOG0647|consen 144 TRSS----------NPVATLQ-LPERVYAADVLY---PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQD 209 (347)
T ss_pred cCCC----------Ceeeeee-ccceeeehhccC---ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEec
Confidence 9964 4455544 355666666532 35666667777777777654321000
Q ss_pred ----CCCCcccceEEEeccCCceee-----ecC----CCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcc
Q 005506 187 ----GSSHQECRNILLDLRCGAKRS-----LAD----PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS 253 (693)
Q Consensus 187 ----~~~~~~~~~~l~~~~~~~~~~-----l~~----~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~ 253 (693)
..+..+++..+..+..+.... ... .......|++|+|+|. ...|+|++.||++.+||-.....+.+
T Consensus 210 ~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~-hgtlvTaGsDGtf~FWDkdar~kLk~ 288 (347)
T KOG0647|consen 210 KDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPV-HGTLVTAGSDGTFSFWDKDARTKLKT 288 (347)
T ss_pred CCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecc-cceEEEecCCceEEEecchhhhhhhc
Confidence 001111122222222110000 000 1112457889999997 56999999999999999876544332
Q ss_pred cccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEec
Q 005506 254 CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS 299 (693)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~ 299 (693)
. ..|.. +|++++|+.+|.+++-+.+
T Consensus 289 s--------------------~~~~q-pItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 289 S--------------------ETHPQ-PITCCSFNRNGSIFAYALG 313 (347)
T ss_pred c--------------------CcCCC-ccceeEecCCCCEEEEEee
Confidence 2 11222 6999999999998875543
No 125
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.80 E-value=1.4e-17 Score=161.97 Aligned_cols=179 Identities=20% Similarity=0.291 Sum_probs=148.8
Q ss_pred ccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCC-CCEEEEEeCCCcEEEEEc
Q 005506 47 EGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS-DELVVSGAGDAEVRLFNL 124 (693)
Q Consensus 47 ~gH~~~V~~l~~s~-~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~-~~~l~sgs~Dg~V~vwdl 124 (693)
.+|.-.|.++.|-| |.-.+.|+|-|.+++|||..+-+....+ ...+.|.+-+|+|-.. .-++|+|..|-.|++-|+
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F--~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi 175 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDF--KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDI 175 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEe--ecCceeehhhcChhhhcceEEEEecCCCcEEEEec
Confidence 47888999999999 5668889999999999999998888777 4677899999998642 347888888999999999
Q ss_pred CCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCc
Q 005506 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (693)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (693)
..+ ...+++.+|...|.++.|+|....+|+||+.||.|++||+|....| -...|...+.
T Consensus 176 ~SG----------s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgc-----------f~~lD~hn~k 234 (397)
T KOG4283|consen 176 ASG----------SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGC-----------FRVLDQHNTK 234 (397)
T ss_pred cCC----------cceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccce-----------eEEeecccCc
Confidence 965 5688999999999999999988899999999999999999986543 2233333322
Q ss_pred -eeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC
Q 005506 205 -KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (693)
Q Consensus 205 -~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~ 249 (693)
.+.+...+.|...+..++|..+ +.++++++.|..+++|+..++.
T Consensus 235 ~~p~~~~n~ah~gkvngla~tSd-~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 235 RPPILKTNTAHYGKVNGLAWTSD-ARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred cCccccccccccceeeeeeeccc-chhhhhccCccceEEeecccCc
Confidence 2334446678889999999997 7899999999999999998775
No 126
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.79 E-value=1e-18 Score=170.78 Aligned_cols=243 Identities=18% Similarity=0.278 Sum_probs=182.3
Q ss_pred ceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEE---EEeccCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 005506 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL---HSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (693)
Q Consensus 41 ~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~---~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg 117 (693)
-++++|..|.+.|++|.|+|...+|++|+.|++|+++|+...... +.+ ....+|.++.|+|. |.+|+.|..-.
T Consensus 163 PvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~--qd~~~vrsiSfHPs--GefllvgTdHp 238 (430)
T KOG0640|consen 163 PVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVF--QDTEPVRSISFHPS--GEFLLVGTDHP 238 (430)
T ss_pred ceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHh--hccceeeeEeecCC--CceEEEecCCC
Confidence 468889999999999999999999999999999999999754322 223 24568999999999 79999999999
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEE
Q 005506 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (693)
Q Consensus 118 ~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l 197 (693)
++++||+++.+ ++ -+...-..|+..|+++.+++ .+++.+|++.||.|++||--+.+.+..+...
T Consensus 239 ~~rlYdv~T~Q--cf-----vsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~A-------- 302 (430)
T KOG0640|consen 239 TLRLYDVNTYQ--CF-----VSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNA-------- 302 (430)
T ss_pred ceeEEecccee--Ee-----eecCcccccccceeEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhh--------
Confidence 99999999642 11 01112346999999999999 7789999999999999997665432111111
Q ss_pred EeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCC
Q 005506 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 277 (693)
Q Consensus 198 ~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (693)
-....|.+..|..+ ++++++.+.|..|++|.+.++..+..+ ......+ .
T Consensus 303 ---------------H~gsevcSa~Ftkn-~kyiLsSG~DS~vkLWEi~t~R~l~~Y-------------tGAg~tg--r 351 (430)
T KOG0640|consen 303 ---------------HGGSEVCSAVFTKN-GKYILSSGKDSTVKLWEISTGRMLKEY-------------TGAGTTG--R 351 (430)
T ss_pred ---------------cCCceeeeEEEccC-CeEEeecCCcceeeeeeecCCceEEEE-------------ecCCccc--c
Confidence 12357888899986 799999999999999999987544333 2211111 1
Q ss_pred CccceEEEEEcCCCCEEEEEec-CCcEEEEECCCCCcc-eEEeecCCCceeEEeccCCCc
Q 005506 278 SSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGR-AMRYTVGDASKIMSFTPTLNG 335 (693)
Q Consensus 278 ~~~~V~~v~fspdg~~L~sgs~-Dg~V~lwdl~~~~~~-~~~~~~~~~~~~~~~~p~~~g 335 (693)
.. .-+...|+....|++.-.. .+.+.-||-+++... .....+..+++.+..+|....
T Consensus 352 q~-~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~ 410 (430)
T KOG0640|consen 352 QK-HRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPA 410 (430)
T ss_pred hh-hhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCc
Confidence 11 2356778888888887765 678999999997654 344567778888889987543
No 127
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=1.3e-18 Score=190.87 Aligned_cols=176 Identities=17% Similarity=0.253 Sum_probs=139.0
Q ss_pred EEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCC----------------------------CC-----CC
Q 005506 85 LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF----------------------------SG-----RG 131 (693)
Q Consensus 85 ~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~----------------------------~~-----~~ 131 (693)
.+.+...|.+.|++++|+++ |++||+|+.|+.||||.+... .. +.
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~D--GKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHD--GKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT 336 (712)
T ss_pred eeccccccCCcEEEEEeCCC--CceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence 34453389999999999999 799999999999999998750 00 00
Q ss_pred C-----------------CCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccc
Q 005506 132 L-----------------DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (693)
Q Consensus 132 ~-----------------~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~ 194 (693)
. -....+|+..+.+|...|.+|.|+. .++|+|++.|.+||+|++.... |.
T Consensus 337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~-----------CL 403 (712)
T KOG0283|consen 337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKE-----------CL 403 (712)
T ss_pred cccccccCCccccCCCccccccccchhhhhccchhheeccccc--CCeeEeccccccEEeecCCCcc-----------ee
Confidence 0 0112356778899999999999996 4688899999999999987544 33
Q ss_pred eEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCcccc
Q 005506 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 274 (693)
Q Consensus 195 ~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (693)
.++ .|...|+|++|+|.+.++|++|+-||.||||++...+.+ .+...
T Consensus 404 ~~F---------------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv--------------~W~Dl---- 450 (712)
T KOG0283|consen 404 KVF---------------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVV--------------DWNDL---- 450 (712)
T ss_pred eEE---------------ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeE--------------eehhh----
Confidence 333 467789999999999999999999999999999864322 11111
Q ss_pred CCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCC
Q 005506 275 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 275 ~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~ 312 (693)
+ .-||+++|.|+|++.++|+.+|.+++|+....+
T Consensus 451 --~--~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk 484 (712)
T KOG0283|consen 451 --R--DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLK 484 (712)
T ss_pred --h--hhheeEEeccCCceEEEEEeccEEEEEEccCCe
Confidence 1 149999999999999999999999999999844
No 128
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.9e-17 Score=162.56 Aligned_cols=223 Identities=18% Similarity=0.250 Sum_probs=158.3
Q ss_pred eEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC-----cEEE-EeccCCCcceEEEEEeeCCCCCEEEEEeCC
Q 005506 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR-----KLLH-SIETGHSANVFCTKFVPETSDELVVSGAGD 116 (693)
Q Consensus 43 ~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~-----~~~~-~l~~~h~~~I~sv~f~p~~~~~~l~sgs~D 116 (693)
...|+||.+.|++++|+.+|++|||++.|+.|+||++... ++++ .+..+| .+.|.|.|+. ..+++++...
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dh---pT~V~FapDc-~s~vv~~~~g 154 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDH---PTRVVFAPDC-KSVVVSVKRG 154 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCC---ceEEEECCCc-ceEEEEEccC
Confidence 4568999999999999999999999999999999998753 2332 232344 5789999996 5677787778
Q ss_pred CcEEEEEcCCCCC-CC-CCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccc
Q 005506 117 AEVRLFNLSRFSG-RG-LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (693)
Q Consensus 117 g~V~vwdl~~~~~-~~-~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~ 194 (693)
.++++|-+..... .. .....+.....-..|.-.|..+-... +..+|+|++.|..|.+||++ ++...
T Consensus 155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L~---------- 222 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLLQ---------- 222 (420)
T ss_pred CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-Cceee----------
Confidence 8999998864321 11 00111111222334666777777765 77899999999999999998 44221
Q ss_pred eEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCcccc
Q 005506 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 274 (693)
Q Consensus 195 ~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (693)
.........+..++||+ |+++++++--..|++|.+--.+. .+++ ...+.| ..
T Consensus 223 ---------------~idtnq~~n~~aavSP~-GRFia~~gFTpDVkVwE~~f~kd-G~fq------ev~rvf-----~L 274 (420)
T KOG2096|consen 223 ---------------SIDTNQSSNYDAAVSPD-GRFIAVSGFTPDVKVWEPIFTKD-GTFQ------EVKRVF-----SL 274 (420)
T ss_pred ---------------eeccccccccceeeCCC-CcEEEEecCCCCceEEEEEeccC-cchh------hhhhhh-----ee
Confidence 11112234567889997 79999999999999998743221 0010 001111 12
Q ss_pred CCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCC
Q 005506 275 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 275 ~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~ 310 (693)
.||.. .|+.++|+++.+.+++.+.||.++|||++-
T Consensus 275 kGH~s-aV~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 275 KGHQS-AVLAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred ccchh-heeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 56766 699999999999999999999999999864
No 129
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.9e-17 Score=182.42 Aligned_cols=243 Identities=16% Similarity=0.229 Sum_probs=175.6
Q ss_pred ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC-cEEEEe-------------------------------------
Q 005506 47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR-KLLHSI------------------------------------- 88 (693)
Q Consensus 47 ~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~-~~~~~l------------------------------------- 88 (693)
.+|++.-+.|+|.++|++|.+++.||.|++|+.... ....++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~ 89 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEED 89 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCcc
Confidence 368999999999999999999999999999976432 111111
Q ss_pred --ccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEE
Q 005506 89 --ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSA 166 (693)
Q Consensus 89 --~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sg 166 (693)
....+-++.+++|+.+ |.++|.|+.|-.|++-++... .....+.+|..+|.+|.++| .+++||+.
T Consensus 90 ~iL~Rftlp~r~~~v~g~--g~~iaagsdD~~vK~~~~~D~----------s~~~~lrgh~apVl~l~~~p-~~~fLAvs 156 (933)
T KOG1274|consen 90 TILARFTLPIRDLAVSGS--GKMIAAGSDDTAVKLLNLDDS----------SQEKVLRGHDAPVLQLSYDP-KGNFLAVS 156 (933)
T ss_pred ceeeeeeccceEEEEecC--CcEEEeecCceeEEEEecccc----------chheeecccCCceeeeeEcC-CCCEEEEE
Confidence 0123446677777766 678888888888888877754 34678889999999999999 77999999
Q ss_pred eCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecC
Q 005506 167 SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR 246 (693)
Q Consensus 167 s~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r 246 (693)
+.||.|++||+..+...... -.+.... . ......+..++|+|++ ..|++.+.|+.|++|++.
T Consensus 157 s~dG~v~iw~~~~~~~~~tl-----------~~v~k~n-----~-~~~s~i~~~~aW~Pk~-g~la~~~~d~~Vkvy~r~ 218 (933)
T KOG1274|consen 157 SCDGKVQIWDLQDGILSKTL-----------TGVDKDN-----E-FILSRICTRLAWHPKG-GTLAVPPVDNTVKVYSRK 218 (933)
T ss_pred ecCceEEEEEcccchhhhhc-----------ccCCccc-----c-ccccceeeeeeecCCC-CeEEeeccCCeEEEEccC
Confidence 99999999999876532111 1000000 0 0013356789999984 567777889999999999
Q ss_pred CCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCcee
Q 005506 247 MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKI 326 (693)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~ 326 (693)
.+.....+.. ..+.. .++.+.|+|+|+||++++.||.|.|||..+-.. ......+..
T Consensus 219 ~we~~f~Lr~------------------~~~ss-~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~ 275 (933)
T KOG1274|consen 219 GWELQFKLRD------------------KLSSS-KFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCC 275 (933)
T ss_pred Cceeheeecc------------------ccccc-ceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEE
Confidence 8765543321 11222 389999999999999999999999999997221 233456778
Q ss_pred EEeccCCCcccccCCcc
Q 005506 327 MSFTPTLNGLELQPPIH 343 (693)
Q Consensus 327 ~~~~p~~~g~~~~~~~~ 343 (693)
++|.|..+.+.+....+
T Consensus 276 ~aw~p~~n~it~~~~~g 292 (933)
T KOG1274|consen 276 EAWKPNANAITLITALG 292 (933)
T ss_pred EecCCCCCeeEEEeecc
Confidence 88999888876654433
No 130
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=5.2e-18 Score=178.15 Aligned_cols=250 Identities=19% Similarity=0.306 Sum_probs=184.2
Q ss_pred hhhhcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC--------CcEEEEeccCCCcceEEEEEeeCC
Q 005506 34 SSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS--------RKLLHSIETGHSANVFCTKFVPET 105 (693)
Q Consensus 34 ~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~--------~~~~~~l~~~h~~~I~sv~f~p~~ 105 (693)
+.+.+...+..++..|.++|..+.|.+....|++++.|++|++|++.. -+++.++ .+|.++|.|+++.++
T Consensus 278 ~a~~k~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tf-raH~gPVl~v~v~~n- 355 (577)
T KOG0642|consen 278 KAFTKKWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTF-RAHEGPVLCVVVPSN- 355 (577)
T ss_pred hhhheecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEE-ecccCceEEEEecCC-
Confidence 345666677779999999999999999999999999999999999932 2467777 799999999999998
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCCCCCCCCC-CCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCC
Q 005506 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNA-ITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP 184 (693)
Q Consensus 106 ~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~-~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~ 184 (693)
+..+++|+.||+|+.|++. .+....+... ......+.+|.+.|+.+++++ ....|++++.||+|++|+.....+|.
T Consensus 356 -~~~~ysgg~Dg~I~~w~~p-~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~~~ 432 (577)
T KOG0642|consen 356 -GEHCYSGGIDGTIRCWNLP-PNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESPCT 432 (577)
T ss_pred -ceEEEeeccCceeeeeccC-CCCCcccccCcchhccceeccccceeeeeecc-cccceeeecCCceEEeeccCCcCccc
Confidence 6999999999999999887 3332222221 123567889999999999998 55678899999999999988766531
Q ss_pred CCCCCCcccceE----------------------EEeccCCceeeecCC-----CCCccceEEEEEcCCCCcEEEEEeCC
Q 005506 185 PAGSSHQECRNI----------------------LLDLRCGAKRSLADP-----PKQTLSLKSCDISSTRPHLLLVGGSD 237 (693)
Q Consensus 185 ~~~~~~~~~~~~----------------------l~~~~~~~~~~l~~~-----~~~~~~v~sl~~sp~~~~~Latgs~D 237 (693)
...... ..... +.+........+... +.....+..+.++|. ..+.+++..|
T Consensus 433 f~~~~e-~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~-~~~~~~~hed 510 (577)
T KOG0642|consen 433 FGEPKE-HGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPT-ADITFTAHED 510 (577)
T ss_pred cCCccc-cCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCC-CCeeEecccC
Confidence 111100 00111 111111111111111 112235677888997 4689999999
Q ss_pred CcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCC
Q 005506 238 AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (693)
Q Consensus 238 g~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~ 311 (693)
+.|+++|..++.++.+. ..|.. .++++++.|+|.+|++++.|+.|++|.+...
T Consensus 511 ~~Ir~~dn~~~~~l~s~--------------------~a~~~-svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 511 RSIRFFDNKTGKILHSM--------------------VAHKD-SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred Cceecccccccccchhe--------------------eeccc-eecceeecCCCceEEeecCCceeehhhccch
Confidence 99999999988765433 12333 5999999999999999999999999999773
No 131
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=4.2e-18 Score=174.11 Aligned_cols=203 Identities=18% Similarity=0.267 Sum_probs=160.6
Q ss_pred EEEEEECCC-------CCEEEEEeCCCcEEEEECCCCcEE--------------------EEeccCCCcceEEEEEeeCC
Q 005506 53 VNAISWNSK-------GSLLISGSDDTHINVWSYSSRKLL--------------------HSIETGHSANVFCTKFVPET 105 (693)
Q Consensus 53 V~~l~~s~~-------g~~LaSgs~Dg~I~IWd~~~~~~~--------------------~~l~~~h~~~I~sv~f~p~~ 105 (693)
..|++|... |+++|.|..|..|.|||+.-...+ .....+|+..|.++.|+-..
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 357788643 689999999999999998631100 00114799999999999875
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCC
Q 005506 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP 185 (693)
Q Consensus 106 ~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~ 185 (693)
-++||+|+.|.+|++||+.+. +|..++..|.+.|.+++|+|..+.+|++|+.|++|.+.|.|.....
T Consensus 256 -~nVLaSgsaD~TV~lWD~~~g----------~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s-- 322 (463)
T KOG0270|consen 256 -RNVLASGSADKTVKLWDVDTG----------KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS-- 322 (463)
T ss_pred -ceeEEecCCCceEEEEEcCCC----------CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc--
Confidence 689999999999999999976 6678888899999999999999999999999999999999964321
Q ss_pred CCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCccc
Q 005506 186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN 265 (693)
Q Consensus 186 ~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~ 265 (693)
..-|. ....|-.++|+|.....++++..||+|+-+|+|... .++.
T Consensus 323 ---------~~~wk--------------~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~------------~~vw 367 (463)
T KOG0270|consen 323 ---------GKEWK--------------FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG------------KPVW 367 (463)
T ss_pred ---------CceEE--------------eccceEEEEecCCCceeEEEecCCceEEeeecCCCC------------Ccee
Confidence 11221 134678899999989999999999999999999752 2222
Q ss_pred ccccCccccCCCCccceEEEEEcCCCC-EEEEEecCCcEEEEECCCC
Q 005506 266 YFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHA 311 (693)
Q Consensus 266 ~~~~~~~~~~~~~~~~V~~v~fspdg~-~L~sgs~Dg~V~lwdl~~~ 311 (693)
.. +.|.. .|.+|++++.-. .|++++.|+.|.+|++...
T Consensus 368 t~-------~AHd~-~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~ 406 (463)
T KOG0270|consen 368 TL-------KAHDD-EISGLSVNIQTPGLLSTASTDKVVKLWKFDVD 406 (463)
T ss_pred EE-------EeccC-CcceEEecCCCCcceeeccccceEEEEeecCC
Confidence 22 44555 699999998665 5678888999999999874
No 132
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.78 E-value=3.9e-18 Score=175.76 Aligned_cols=246 Identities=17% Similarity=0.265 Sum_probs=182.5
Q ss_pred CcCcccccchhhhc--ccceeEEeccC-CCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEE
Q 005506 25 DVNHSLQMHSSLVR--RLSQERELEGH-QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 101 (693)
Q Consensus 25 ~~~~~l~~~~~~i~--~l~~~~~l~gH-~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f 101 (693)
..+..+.+|...-+ .......+.|. .-||.|+.++ .++++|+..+.|+|||+... .++.+..+|...|++|.|
T Consensus 54 ~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S---~y~~sgG~~~~Vkiwdl~~k-l~hr~lkdh~stvt~v~Y 129 (673)
T KOG4378|consen 54 AGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQS---LYEISGGQSGCVKIWDLRAK-LIHRFLKDHQSTVTYVDY 129 (673)
T ss_pred CCceeEEEecccCCCCccceeeccccchHHHHhhhhcc---eeeeccCcCceeeehhhHHH-HHhhhccCCcceeEEEEe
Confidence 34455555544333 12223334443 3466666665 79999999999999999854 444444899999999999
Q ss_pred eeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeecc-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 005506 102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC-HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180 (693)
Q Consensus 102 ~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~-h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~ 180 (693)
+-+ +.+||+++..|.|.|+.+.+.. ....+.. ....|.-+.++|....+|.+++.+|.|.+||+...
T Consensus 130 N~~--DeyiAsvs~gGdiiih~~~t~~----------~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~ 197 (673)
T KOG4378|consen 130 NNT--DEYIASVSDGGDIIIHGTKTKQ----------KTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGM 197 (673)
T ss_pred cCC--cceeEEeccCCcEEEEecccCc----------cccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCC
Confidence 987 7999999999999999998652 1223332 24567789999988889999999999999999765
Q ss_pred CCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCC
Q 005506 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP 260 (693)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~ 260 (693)
.+. ......|..+...|+|+|.+..+|++.+.|..|.+||++.....
T Consensus 198 sp~------------------------~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~--------- 244 (673)
T KOG4378|consen 198 SPI------------------------FHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAST--------- 244 (673)
T ss_pred Ccc------------------------cchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccc---------
Confidence 432 22223567788899999999999999999999999999965432
Q ss_pred CCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceE-EeecCCCceeEEeccC
Q 005506 261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM-RYTVGDASKIMSFTPT 332 (693)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~-~~~~~~~~~~~~~~p~ 332 (693)
.|+.+- .+.+.|+|+++|.+|++|...|.|+.||++..+.+.. ...+...+..++|.|.
T Consensus 245 -~~l~y~------------~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 245 -DRLTYS------------HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred -ceeeec------------CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeec
Confidence 222221 2578999999999999999999999999999665533 3344555777777765
No 133
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.5e-18 Score=178.54 Aligned_cols=132 Identities=23% Similarity=0.179 Sum_probs=118.6
Q ss_pred cCcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCC---------CCcchhhhhhhHHHHHHhccccCcHHHHHH
Q 005506 358 TGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGI---------GPMLRHECLCIRAALLLKRKWKNDAQMAIR 428 (693)
Q Consensus 358 ~~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~---------~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~ 428 (693)
...+.+...++.||.+|+.|+ |..|+..|.+|+....... ..+++..||.|.|+||+|++. |.+|+.
T Consensus 203 e~l~~A~~~ke~Gn~~fK~gk-~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~---~~~Ai~ 278 (397)
T KOG0543|consen 203 ERLEAADRKKERGNVLFKEGK-FKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKE---YKEAIE 278 (397)
T ss_pred HHHHHHHHHHHhhhHHHhhch-HHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhh---HHHHHH
Confidence 356778899999999999999 9999999999998754321 134556799999999999765 999999
Q ss_pred hHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHHHHHHHHHHHH
Q 005506 429 DCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAET 493 (693)
Q Consensus 429 Dc~~Al~l~p~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l~~~i~~~~~ 493 (693)
-|+++|+++|+|+||+||||+||+++++|+.|..+|+++++++|+|++++.++..|++++++...
T Consensus 279 ~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~ 343 (397)
T KOG0543|consen 279 SCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEE 343 (397)
T ss_pred HHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988763
No 134
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.76 E-value=1.6e-17 Score=176.19 Aligned_cols=251 Identities=18% Similarity=0.222 Sum_probs=165.4
Q ss_pred EeccCCCcEEE--EEECC---CCCEEEEEeCCCcEEEEECCCCcEE------EEeccCCCcceEEEEEeeCCCCCEEEEE
Q 005506 45 ELEGHQGCVNA--ISWNS---KGSLLISGSDDTHINVWSYSSRKLL------HSIETGHSANVFCTKFVPETSDELVVSG 113 (693)
Q Consensus 45 ~l~gH~~~V~~--l~~s~---~g~~LaSgs~Dg~I~IWd~~~~~~~------~~l~~~h~~~I~sv~f~p~~~~~~l~sg 113 (693)
....|.-+|.- ..|++ ..++||.+.+||.|.++|....... ... ..|...|+.++|.|. ...|+++
T Consensus 42 s~~~~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~-~aH~nAifDl~wapg--e~~lVsa 118 (720)
T KOG0321|consen 42 SYANDGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKP-LAHKNAIFDLKWAPG--ESLLVSA 118 (720)
T ss_pred ccccCCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhccc-ccccceeEeeccCCC--ceeEEEc
Confidence 33344444444 66765 3569999999999999998754322 233 689999999999995 6899999
Q ss_pred eCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCccc
Q 005506 114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 193 (693)
Q Consensus 114 s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~ 193 (693)
+.|.++++||+...... -...+.+|...|++++|.|.++.+|++|+.||.|.|||+|....-. ....|
T Consensus 119 sGDsT~r~Wdvk~s~l~--------G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~----~e~~~ 186 (720)
T KOG0321|consen 119 SGDSTIRPWDVKTSRLV--------GGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDA----LEEFD 186 (720)
T ss_pred cCCceeeeeeeccceee--------cceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhh----HHHHh
Confidence 99999999999975221 1334889999999999999999999999999999999999764110 00001
Q ss_pred ceEEEeccCCce-------eeecCCCCCccceEE---EEEcCCCCcEEEEEeC-CCcEEEEecCCCCCCcccccCCCCCC
Q 005506 194 RNILLDLRCGAK-------RSLADPPKQTLSLKS---CDISSTRPHLLLVGGS-DAFARLYDRRMLPPLTSCQKRMSPPP 262 (693)
Q Consensus 194 ~~~l~~~~~~~~-------~~l~~~~~~~~~v~s---l~~sp~~~~~Latgs~-Dg~IriwD~r~~~~~~~~~~~~~~~~ 262 (693)
+.+++...+.. ..+.....+...|.+ +.+..| ...||+++. |+.|++||+|........ .|..
T Consensus 187 -~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkD-e~tlaSaga~D~~iKVWDLRk~~~~~r~----ep~~ 260 (720)
T KOG0321|consen 187 -NRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKD-ESTLASAGAADSTIKVWDLRKNYTAYRQ----EPRG 260 (720)
T ss_pred -hhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEec-cceeeeccCCCcceEEEeeccccccccc----CCCc
Confidence 11111111100 001111112223333 344454 467777776 999999999976432111 1111
Q ss_pred cccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCC
Q 005506 263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGD 322 (693)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~ 322 (693)
...+ +.+ ......++++..+..|.+|++.+.|+.||+||+.+-...++....+.
T Consensus 261 ~~~~--~t~----skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~ 314 (720)
T KOG0321|consen 261 SDKY--PTH----SKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGK 314 (720)
T ss_pred ccCc--cCc----ccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCc
Confidence 1111 111 12233588999999999999999999999999998665554443333
No 135
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.76 E-value=1.1e-16 Score=174.48 Aligned_cols=289 Identities=20% Similarity=0.321 Sum_probs=205.6
Q ss_pred hhcccceeEEeccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEe
Q 005506 36 LVRRLSQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA 114 (693)
Q Consensus 36 ~i~~l~~~~~l~gH~~~V~~l~~s~~g~-~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs 114 (693)
.++..+.+.+++.-.+.|++|+|..||. +||+|+..|.+.+||++..+.+..+...|.+.|....|.|. ...++|++
T Consensus 230 NlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~--epVl~ta~ 307 (910)
T KOG1539|consen 230 NLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPG--EPVLVTAG 307 (910)
T ss_pred EcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCC--CceEeecc
Confidence 4566677888885579999999999986 77788888999999999988888887799999999999998 58999999
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCC-----------
Q 005506 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC----------- 183 (693)
Q Consensus 115 ~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~----------- 183 (693)
.|+.+++|=...+.+.. ..+..-.+|+.+..+|.|.-.++..+.+++.|++++.+++......
T Consensus 308 ~DnSlk~~vfD~~dg~p------R~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~ 381 (910)
T KOG1539|consen 308 ADNSLKVWVFDSGDGVP------RLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKR 381 (910)
T ss_pred CCCceeEEEeeCCCCcc------hheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccc
Confidence 99999999777554422 4567778999999999999778889999999999888876532110
Q ss_pred --------------CCCC----------------CCC--------------------------------------cccce
Q 005506 184 --------------PPAG----------------SSH--------------------------------------QECRN 195 (693)
Q Consensus 184 --------------~~~~----------------~~~--------------------------------------~~~~~ 195 (693)
+++. ..| ..|-+
T Consensus 382 ~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGN 461 (910)
T KOG1539|consen 382 AKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGN 461 (910)
T ss_pred cccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCc
Confidence 0000 000 00000
Q ss_pred -EEE----------eccCCcee-eecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCc
Q 005506 196 -ILL----------DLRCGAKR-SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC 263 (693)
Q Consensus 196 -~l~----------~~~~~~~~-~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~ 263 (693)
.++ ++.+|-.. .....+.|..+|+.++.... ++.+++++.+|.+.+||........++....... +
T Consensus 462 F~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~-n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~-~ 539 (910)
T KOG1539|consen 462 FVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGT-NRLLVSAGADGILKFWDFKKKVLKKSLRLGSSIT-G 539 (910)
T ss_pred eEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCC-CceEEEccCcceEEEEecCCcceeeeeccCCCcc-e
Confidence 111 11111111 11123567778999999886 5799999999999999998876554443322111 1
Q ss_pred ccccc-----------------cCc-----cccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecC
Q 005506 264 VNYFC-----------------PMH-----LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVG 321 (693)
Q Consensus 264 ~~~~~-----------------~~~-----~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~ 321 (693)
+.+.. ..+ -...||.+ .|+.++|||||++|++++.|++|++||+.++.+ .-.+..+
T Consensus 540 iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~n-ritd~~FS~DgrWlisasmD~tIr~wDlpt~~l-ID~~~vd 617 (910)
T KOG1539|consen 540 IVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGN-RITDMTFSPDGRWLISASMDSTIRTWDLPTGTL-IDGLLVD 617 (910)
T ss_pred eeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcccc-ceeeeEeCCCCcEEEEeecCCcEEEEeccCcce-eeeEecC
Confidence 11100 000 00145766 699999999999999999999999999999653 3344456
Q ss_pred CCceeEEeccCCCcc
Q 005506 322 DASKIMSFTPTLNGL 336 (693)
Q Consensus 322 ~~~~~~~~~p~~~g~ 336 (693)
.+...+.|+|+.+-+
T Consensus 618 ~~~~sls~SPngD~L 632 (910)
T KOG1539|consen 618 SPCTSLSFSPNGDFL 632 (910)
T ss_pred CcceeeEECCCCCEE
Confidence 778888899875443
No 136
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.75 E-value=9.2e-17 Score=155.98 Aligned_cols=231 Identities=16% Similarity=0.275 Sum_probs=173.8
Q ss_pred hcccceeEEec-cCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcE-EEEec----cCCCcceEEEEEeeCCCCCEE
Q 005506 37 VRRLSQERELE-GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL-LHSIE----TGHSANVFCTKFVPETSDELV 110 (693)
Q Consensus 37 i~~l~~~~~l~-gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~-~~~l~----~~h~~~I~sv~f~p~~~~~~l 110 (693)
...++++..|. .|-+.|+|+.|.|++..||+-. |..|.+|++..+.. +..+. ..|....++-+|+|..+++.+
T Consensus 109 ~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv 187 (370)
T KOG1007|consen 109 SSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQV 187 (370)
T ss_pred cchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceE
Confidence 34466677776 6778999999999999999876 78999999987765 33332 246677899999997767888
Q ss_pred EEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCC
Q 005506 111 VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSH 190 (693)
Q Consensus 111 ~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~ 190 (693)
++. .|+++..||+++.. +....-.+|...|..+.|+|....+|+||+.||.|++||+|..+.
T Consensus 188 ~tt-~d~tl~~~D~RT~~---------~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~-------- 249 (370)
T KOG1007|consen 188 ATT-SDSTLQFWDLRTMK---------KNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF-------- 249 (370)
T ss_pred EEe-CCCcEEEEEccchh---------hhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc--------
Confidence 776 57999999999643 224445679999999999998889999999999999999998653
Q ss_pred cccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccC-------------
Q 005506 191 QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR------------- 257 (693)
Q Consensus 191 ~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~------------- 257 (693)
++...+.|.-.|.++.|+|...+++++|+.|..|.+|..........+...
T Consensus 250 ----------------pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dsee 313 (370)
T KOG1007|consen 250 ----------------PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEE 313 (370)
T ss_pred ----------------cccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHH
Confidence 345566788899999999988899999999999999987654422111110
Q ss_pred ---CCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEE-ecCCcEEEEECCC
Q 005506 258 ---MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS-YSGEHVYLMDVNH 310 (693)
Q Consensus 258 ---~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sg-s~Dg~V~lwdl~~ 310 (693)
..+...+.+| ..|.. .|.+++||.-..+++++ +.||.|.|=.+..
T Consensus 314 r~kpL~dg~l~ty-------dehED-SVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 314 RVKPLQDGQLETY-------DEHED-SVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred hcccccccccccc-------ccccc-ceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 0011112222 34555 69999999888877655 5699988766544
No 137
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=1e-17 Score=188.93 Aligned_cols=231 Identities=20% Similarity=0.286 Sum_probs=171.3
Q ss_pred CCcEEEEEECCCCCE----EEEEeCCCcEEEEECCCC---c---EEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 005506 50 QGCVNAISWNSKGSL----LISGSDDTHINVWSYSSR---K---LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (693)
Q Consensus 50 ~~~V~~l~~s~~g~~----LaSgs~Dg~I~IWd~~~~---~---~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V 119 (693)
....+.|+|.+.|.. ||.|..||.|.+||...- . .+.+. ..|.+.|..+.|++.. +++||+|+.||.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~-~~h~G~V~gLDfN~~q-~nlLASGa~~geI 141 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATK-SKHTGPVLGLDFNPFQ-GNLLASGADDGEI 141 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhh-cccCCceeeeeccccC-CceeeccCCCCcE
Confidence 346889999997765 899999999999998752 2 33344 5799999999999997 7899999999999
Q ss_pred EEEEcCCCCCCCCCCCCCCCcee-eccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEE
Q 005506 120 RLFNLSRFSGRGLDDNAITPSAL-YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (693)
Q Consensus 120 ~vwdl~~~~~~~~~~~~~~~~~~-~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~ 198 (693)
.|||++.... +... -..-...|++|+|+....++|++++.+|.+.|||+|..+.+.
T Consensus 142 ~iWDlnn~~t---------P~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii-------------- 198 (1049)
T KOG0307|consen 142 LIWDLNKPET---------PFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPII-------------- 198 (1049)
T ss_pred EEeccCCcCC---------CCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccc--------------
Confidence 9999997431 1111 222467899999998888999999999999999999875331
Q ss_pred eccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCC---CcEEEEecCCCCCCcccccCCCCCCcccccccCccccC
Q 005506 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (693)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~D---g~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (693)
.+.. ... ...+..++|+|+....|++++.| ..|.+||+|... ..++.+ .
T Consensus 199 ~ls~--------~~~-~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as------------sP~k~~-------~ 250 (1049)
T KOG0307|consen 199 KLSD--------TPG-RMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS------------SPLKIL-------E 250 (1049)
T ss_pred cccc--------CCC-ccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC------------Cchhhh-------c
Confidence 1111 111 14578899999988889988875 569999999642 112222 3
Q ss_pred CCCccceEEEEEcCCC-CEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCC
Q 005506 276 GRSSLHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN 334 (693)
Q Consensus 276 ~~~~~~V~~v~fspdg-~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~ 334 (693)
+|.. .|.++.|++.+ .+|++++.|+.|.+|+.++++....+-..+.-...+.|.|...
T Consensus 251 ~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P 309 (1049)
T KOG0307|consen 251 GHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNP 309 (1049)
T ss_pred cccc-ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCc
Confidence 3444 59999999977 7788888899999999999764444433344444556666544
No 138
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.74 E-value=5.1e-17 Score=163.76 Aligned_cols=229 Identities=18% Similarity=0.303 Sum_probs=165.3
Q ss_pred EeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEECCCC-------cEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCC
Q 005506 45 ELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSR-------KLLHSIETGHSANVFCTKFVPETSDELVVSGAGD 116 (693)
Q Consensus 45 ~l~gH~~~V~~l~~s~-~g~~LaSgs~Dg~I~IWd~~~~-------~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~D 116 (693)
.+.||+++|..++|+| +...+||||+|.+|.||.+..+ +.+..+ .+|...|.-|+|+|.. .+.|+|++.|
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L-~gH~rrVg~V~wHPtA-~NVLlsag~D 153 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVEL-YGHQRRVGLVQWHPTA-PNVLLSAGSD 153 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEE-eecceeEEEEeecccc-hhhHhhccCC
Confidence 3579999999999999 5679999999999999998754 345556 7999999999999997 7899999999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceE
Q 005506 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (693)
Q Consensus 117 g~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~ 196 (693)
.+|.+||+.++ +.+..+. |...|+++.|+. ++.+|+|++.|..||+||.|+++..... ..|.
T Consensus 154 n~v~iWnv~tg----------eali~l~-hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~-~~he----- 215 (472)
T KOG0303|consen 154 NTVSIWNVGTG----------EALITLD-HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEG-VAHE----- 215 (472)
T ss_pred ceEEEEeccCC----------ceeeecC-CCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeec-cccc-----
Confidence 99999999976 3344555 999999999998 7889999999999999999998744221 0000
Q ss_pred EEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEe---CCCcEEEEecCCCCCCcccccCCCCCCcccccccCccc
Q 005506 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG---SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 273 (693)
Q Consensus 197 l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs---~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (693)
...-..+.|-.+ +.++.||- ++..+-+||..++..-- .++..
T Consensus 216 ------------------G~k~~Raifl~~-g~i~tTGfsr~seRq~aLwdp~nl~eP~----------~~~el------ 260 (472)
T KOG0303|consen 216 ------------------GAKPARAIFLAS-GKIFTTGFSRMSERQIALWDPNNLEEPI----------ALQEL------ 260 (472)
T ss_pred ------------------CCCcceeEEecc-CceeeeccccccccceeccCcccccCcc----------eeEEe------
Confidence 111223345444 45555553 47888999987754211 11111
Q ss_pred cCCCCccceEEEEEcCCCCEEEEEe-cCCcEEEEECCCCCcceEEe----ecCCCceeEEeccC
Q 005506 274 EHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHAGGRAMRY----TVGDASKIMSFTPT 332 (693)
Q Consensus 274 ~~~~~~~~V~~v~fspdg~~L~sgs-~Dg~V~lwdl~~~~~~~~~~----~~~~~~~~~~~~p~ 332 (693)
..+..|.---|.|+...|+.++ +|+.|+.|.+.+. .+-+.| ...++.+.+.|.|.
T Consensus 261 ---DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d-~P~~hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 261 ---DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE-PPFVHYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred ---ccCCceEEeeecCCCCEEEEEecCCcceEEEEecCC-CceeEEecccccCCcccccccccc
Confidence 1122466666788888887665 5999999999983 333333 34455666666653
No 139
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=4.6e-16 Score=152.87 Aligned_cols=211 Identities=15% Similarity=0.207 Sum_probs=148.6
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCC
Q 005506 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 127 (693)
Q Consensus 48 gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~ 127 (693)
.|..++.+++|.+ ...+++|+-||.|+.+|+.++.... + ..|..+|.||.+++. ...+++|+.|++|++||.+..
T Consensus 52 ~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~-i-gth~~~i~ci~~~~~--~~~vIsgsWD~~ik~wD~R~~ 126 (323)
T KOG1036|consen 52 KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQ-I-GTHDEGIRCIEYSYE--VGCVISGSWDKTIKFWDPRNK 126 (323)
T ss_pred ecCCceeeeeccC-CceEEEeccCceEEEEEecCCccee-e-ccCCCceEEEEeecc--CCeEEEcccCccEEEEecccc
Confidence 3889999999987 4568899999999999999876554 3 479999999999988 478999999999999999953
Q ss_pred CCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCC-----------------
Q 005506 128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSH----------------- 190 (693)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~----------------- 190 (693)
.....+. ....|.++.. .++.|+.|+.|..|.+||+|+...........
T Consensus 127 ----------~~~~~~d-~~kkVy~~~v---~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy 192 (323)
T KOG1036|consen 127 ----------VVVGTFD-QGKKVYCMDV---SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGY 192 (323)
T ss_pred ----------ccccccc-cCceEEEEec---cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCce
Confidence 1233333 3347888877 45788899999999999999875432111000
Q ss_pred ----cccceEEEeccCC----cee-ee------cCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccc
Q 005506 191 ----QECRNILLDLRCG----AKR-SL------ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ 255 (693)
Q Consensus 191 ----~~~~~~l~~~~~~----~~~-~l------~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~ 255 (693)
.+++..+-.+... ..+ .+ ..-.....+|++|+|+|- ...||||+.||.|.+||+.+.+.+..+.
T Consensus 193 ~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~-~~tfaTgGsDG~V~~Wd~~~rKrl~q~~ 271 (323)
T KOG1036|consen 193 VVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI-HGTFATGGSDGIVNIWDLFNRKRLKQLA 271 (323)
T ss_pred EEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc-cceEEecCCCceEEEccCcchhhhhhcc
Confidence 0011100000000 000 00 000112247899999997 6799999999999999998766543321
Q ss_pred cCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEec
Q 005506 256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS 299 (693)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~ 299 (693)
+.. ..|.+++|+.+|..||+++.
T Consensus 272 --------------------~~~-~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 272 --------------------KYE-TSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred --------------------CCC-CceEEEEeccCCCeEEEEec
Confidence 111 25999999999999999875
No 140
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.74 E-value=2.7e-18 Score=170.57 Aligned_cols=118 Identities=22% Similarity=0.149 Sum_probs=110.6
Q ss_pred CcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCC
Q 005506 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS 438 (693)
Q Consensus 359 ~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p 438 (693)
.+....+++++||.+|++|+ |.+||+||+.+|...|.+ +++|.|||.||+|.+. |..|-.||+.||.||-
T Consensus 93 LL~~~SEiKE~GN~yFKQgK-y~EAIDCYs~~ia~~P~N------pV~~~NRA~AYlk~K~---FA~AE~DC~~AiaLd~ 162 (536)
T KOG4648|consen 93 LLKKASEIKERGNTYFKQGK-YEEAIDCYSTAIAVYPHN------PVYHINRALAYLKQKS---FAQAEEDCEAAIALDK 162 (536)
T ss_pred HHHhhHHHHHhhhhhhhccc-hhHHHHHhhhhhccCCCC------ccchhhHHHHHHHHHH---HHHHHHhHHHHHHhhH
Confidence 45567789999999999999 999999999999999877 8999999999999888 9999999999999999
Q ss_pred CCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHHHHH
Q 005506 439 SSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKK 486 (693)
Q Consensus 439 ~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l~~ 486 (693)
.++|||-||++|...||...||.++++.++.|+|++.+..+.+.++..
T Consensus 163 ~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S 210 (536)
T KOG4648|consen 163 LYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS 210 (536)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999888887777766
No 141
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=7.6e-18 Score=177.48 Aligned_cols=120 Identities=21% Similarity=0.183 Sum_probs=112.4
Q ss_pred CcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCC
Q 005506 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS 438 (693)
Q Consensus 359 ~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p 438 (693)
.++.+.+.+.+||++|+.|+ |..||..|++||...|++ +.+|+|||+||+|++. +..||+||.++|+|||
T Consensus 354 ~pe~A~e~r~kGne~Fk~gd-y~~Av~~YteAIkr~P~D------a~lYsNRAac~~kL~~---~~~aL~Da~~~ieL~p 423 (539)
T KOG0548|consen 354 NPEKAEEEREKGNEAFKKGD-YPEAVKHYTEAIKRDPED------ARLYSNRAACYLKLGE---YPEALKDAKKCIELDP 423 (539)
T ss_pred ChhHHHHHHHHHHHHHhccC-HHHHHHHHHHHHhcCCch------hHHHHHHHHHHHHHhh---HHHHHHHHHHHHhcCc
Confidence 55668889999999999999 999999999999999988 8999999999999766 9999999999999999
Q ss_pred CCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHHHHHHH
Q 005506 439 SSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHI 488 (693)
Q Consensus 439 ~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l~~~i 488 (693)
+++|||+|.|.||..+.+|+.|++.|+++++++|+++++...+.++.+.+
T Consensus 424 ~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 424 NFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998888887777654
No 142
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.73 E-value=4.3e-17 Score=168.28 Aligned_cols=245 Identities=13% Similarity=0.207 Sum_probs=176.2
Q ss_pred cccccchhhhc-ccceeEEecc--CCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEec-cCCCcceEEEEEee
Q 005506 28 HSLQMHSSLVR-RLSQERELEG--HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-TGHSANVFCTKFVP 103 (693)
Q Consensus 28 ~~l~~~~~~i~-~l~~~~~l~g--H~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~-~~h~~~I~sv~f~p 103 (693)
.-+++|+.-.. .-.++..|.. ...-|.++...|||+.|++|+.-.++.|||+.........+ +...-....++.+|
T Consensus 440 gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp 519 (705)
T KOG0639|consen 440 GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP 519 (705)
T ss_pred CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC
Confidence 45566653221 1123333332 34568899999999999999999999999998654432221 23334677899999
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCC
Q 005506 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (693)
Q Consensus 104 ~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~ 183 (693)
+ .++.++|..||.|.|||+... ..+..+++|.+.+.||.+++ ++..||||+-|.+||.||+|++...
T Consensus 520 D--akvcFsccsdGnI~vwDLhnq----------~~VrqfqGhtDGascIdis~-dGtklWTGGlDntvRcWDlregrql 586 (705)
T KOG0639|consen 520 D--AKVCFSCCSDGNIAVWDLHNQ----------TLVRQFQGHTDGASCIDISK-DGTKLWTGGLDNTVRCWDLREGRQL 586 (705)
T ss_pred c--cceeeeeccCCcEEEEEcccc----------eeeecccCCCCCceeEEecC-CCceeecCCCccceeehhhhhhhhh
Confidence 9 489999999999999999964 55889999999999999999 7789999999999999999998754
Q ss_pred CCC--------CCCCcccceEEEeccCCceeeec-------CCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCC
Q 005506 184 PPA--------GSSHQECRNILLDLRCGAKRSLA-------DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML 248 (693)
Q Consensus 184 ~~~--------~~~~~~~~~~l~~~~~~~~~~l~-------~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~ 248 (693)
... .........+.+.+..+....+. ....|..-|.++.|.+. |+++++.+.|..+..|...-+
T Consensus 587 qqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~c-GkwfvStGkDnlLnawrtPyG 665 (705)
T KOG0639|consen 587 QQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYC-GKWFVSTGKDNLLNAWRTPYG 665 (705)
T ss_pred hhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEeccc-CceeeecCchhhhhhccCccc
Confidence 211 11111111222333333222221 22235667899999997 799999999999999988766
Q ss_pred CCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEEC
Q 005506 249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV 308 (693)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl 308 (693)
..+... .....|+++.+|.|.++|++|++|....+|.+
T Consensus 666 asiFqs----------------------kE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 666 ASIFQS----------------------KESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cceeec----------------------cccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 433211 22336999999999999999999988888764
No 143
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.73 E-value=1.1e-16 Score=155.56 Aligned_cols=233 Identities=15% Similarity=0.265 Sum_probs=172.9
Q ss_pred cCCCcEEEEEECCCC-----CEEEEEeCCCcEEEEECCC--CcEE-E-Ee----ccCCCcceEEEEEeeCCCCCEEEEEe
Q 005506 48 GHQGCVNAISWNSKG-----SLLISGSDDTHINVWSYSS--RKLL-H-SI----ETGHSANVFCTKFVPETSDELVVSGA 114 (693)
Q Consensus 48 gH~~~V~~l~~s~~g-----~~LaSgs~Dg~I~IWd~~~--~~~~-~-~l----~~~h~~~I~sv~f~p~~~~~~l~sgs 114 (693)
.|.-+++.+.|.|+. .+|||.++ .++||.+.. .+.. . .+ ...+.+++++..|+.-. .++|.+++
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~d-p~~igtSS 170 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVD-PNLIGTSS 170 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCC-cceeEeec
Confidence 588899999999975 47888765 699999873 2211 1 11 13567899999999764 68999999
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccc
Q 005506 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (693)
Q Consensus 115 ~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~ 194 (693)
-|.+..|||+..+.. ......+-+|...|..|+|...+..+|+|+|.||.||+||+|...-.
T Consensus 171 iDTTCTiWdie~~~~-------~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS----------- 232 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVS-------GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS----------- 232 (364)
T ss_pred ccCeEEEEEEeeccc-------cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc-----------
Confidence 999999999996411 01234556899999999999877889999999999999999976421
Q ss_pred eEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCC-CcEEEEecCCCCCCcccccCCCCCCcccccccCccc
Q 005506 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 273 (693)
Q Consensus 195 ~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~D-g~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (693)
.+++ ..+....++..++|++.+++++|+-..| ..|.|.|+|.... .+. .
T Consensus 233 TIIY-----------E~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t------------pva-------~ 282 (364)
T KOG0290|consen 233 TIIY-----------EDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT------------PVA-------R 282 (364)
T ss_pred eEEe-----------cCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc------------cee-------h
Confidence 2233 2222245788999999999999987655 5689999996321 111 1
Q ss_pred cCCCCccceEEEEEcCCC-CEEEEEecCCcEEEEECCCCCc-----ceEEeecCCCceeEEeccC
Q 005506 274 EHGRSSLHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNHAGG-----RAMRYTVGDASKIMSFTPT 332 (693)
Q Consensus 274 ~~~~~~~~V~~v~fspdg-~~L~sgs~Dg~V~lwdl~~~~~-----~~~~~~~~~~~~~~~~~p~ 332 (693)
.++|.. .|+.|+|.|.. .+|.+++.|.++.+||+..... +...|..++.++.+.|+|.
T Consensus 283 L~~H~a-~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~ 346 (364)
T KOG0290|consen 283 LRNHQA-SVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSS 346 (364)
T ss_pred hhcCcc-cccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeeccc
Confidence 145665 69999999964 6889999999999999987443 3445566667777777764
No 144
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=6.4e-16 Score=152.61 Aligned_cols=214 Identities=14% Similarity=0.215 Sum_probs=158.0
Q ss_pred hcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCC
Q 005506 37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD 116 (693)
Q Consensus 37 i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~D 116 (693)
+..-+.++-+.||...|++|+.+|-+..++|++.|++|++||+...++...+. ...-..++|.|. |-++|++...
T Consensus 87 l~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~---~~~~pi~AfDp~--GLifA~~~~~ 161 (311)
T KOG1446|consen 87 LHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN---LSGRPIAAFDPE--GLIFALANGS 161 (311)
T ss_pred eecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe---cCCCcceeECCC--CcEEEEecCC
Confidence 44456788899999999999999999999999999999999999888877763 233346789999 6888888887
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCceeec---cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCccc
Q 005506 117 AEVRLFNLSRFSGRGLDDNAITPSALYQ---CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 193 (693)
Q Consensus 117 g~V~vwdl~~~~~~~~~~~~~~~~~~~~---~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~ 193 (693)
..|++||++.-.. .|..++. .-....+.|.|+| +++.|+.+...+.+++.|.-.+...
T Consensus 162 ~~IkLyD~Rs~dk--------gPF~tf~i~~~~~~ew~~l~FS~-dGK~iLlsT~~s~~~~lDAf~G~~~---------- 222 (311)
T KOG1446|consen 162 ELIKLYDLRSFDK--------GPFTTFSITDNDEAEWTDLEFSP-DGKSILLSTNASFIYLLDAFDGTVK---------- 222 (311)
T ss_pred CeEEEEEecccCC--------CCceeEccCCCCccceeeeEEcC-CCCEEEEEeCCCcEEEEEccCCcEe----------
Confidence 7999999996533 2233332 3467889999999 6677778888899999998776521
Q ss_pred ceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccc
Q 005506 194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 273 (693)
Q Consensus 194 ~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (693)
. .+...+.....--+.+|.|+ ++.+++|+.||+|.+|+++++..+..+..+
T Consensus 223 -~-----------tfs~~~~~~~~~~~a~ftPd-s~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~---------------- 273 (311)
T KOG1446|consen 223 -S-----------TFSGYPNAGNLPLSATFTPD-SKFVLSGSDDGTIHVWNLETGKKVAVLRGP---------------- 273 (311)
T ss_pred -e-----------eEeeccCCCCcceeEEECCC-CcEEEEecCCCcEEEEEcCCCcEeeEecCC----------------
Confidence 0 11111111212257789997 799999999999999999988766544221
Q ss_pred cCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECC
Q 005506 274 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 309 (693)
Q Consensus 274 ~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~ 309 (693)
...++.++.|+|.-..+++++ ..+.+|=..
T Consensus 274 ----~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~ 303 (311)
T KOG1446|consen 274 ----NGGPVSCVRFNPRYAMFVSAS--SNLVFWLPD 303 (311)
T ss_pred ----CCCCccccccCCceeeeeecC--ceEEEEecc
Confidence 122578888999877666654 456666443
No 145
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.73 E-value=5.9e-17 Score=167.25 Aligned_cols=233 Identities=17% Similarity=0.242 Sum_probs=175.1
Q ss_pred cceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC---cEEEEecc-CCCcceEEEEEeeCCCCCEEEEEeC
Q 005506 40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR---KLLHSIET-GHSANVFCTKFVPETSDELVVSGAG 115 (693)
Q Consensus 40 l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~---~~~~~l~~-~h~~~I~sv~f~p~~~~~~l~sgs~ 115 (693)
++.+.+|. |..-|.++.++...+.+.||+. |.|+|||+... ..+..+.. .-..-|.+++..|+ ++.|++|+.
T Consensus 410 arq~~tL~-HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pd--grtLivGGe 485 (705)
T KOG0639|consen 410 ARQINTLA-HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPD--GRTLIVGGE 485 (705)
T ss_pred HHhhhhhc-cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCC--CceEEeccc
Confidence 33444444 8899999999999999999986 78999999643 23333321 23567899999999 699999999
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccce
Q 005506 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (693)
Q Consensus 116 Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~ 195 (693)
-.++.|||+...+.+. ...+.+..-..+.++.+| +.++.+++..||.|.|||++...
T Consensus 486 astlsiWDLAapTpri--------kaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~-------------- 542 (705)
T KOG0639|consen 486 ASTLSIWDLAAPTPRI--------KAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQT-------------- 542 (705)
T ss_pred cceeeeeeccCCCcch--------hhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccce--------------
Confidence 9999999999764322 222233334567899999 67888899999999999998754
Q ss_pred EEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccC
Q 005506 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (693)
Q Consensus 196 ~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (693)
.+..+.+|+..+.||.++++ |..|-||+-|.+||.||+|.+..+...
T Consensus 543 -----------~VrqfqGhtDGascIdis~d-GtklWTGGlDntvRcWDlregrqlqqh--------------------- 589 (705)
T KOG0639|consen 543 -----------LVRQFQGHTDGASCIDISKD-GTKLWTGGLDNTVRCWDLREGRQLQQH--------------------- 589 (705)
T ss_pred -----------eeecccCCCCCceeEEecCC-CceeecCCCccceeehhhhhhhhhhhh---------------------
Confidence 34456688899999999997 789999999999999999987543211
Q ss_pred CCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCC
Q 005506 276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN 334 (693)
Q Consensus 276 ~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~ 334 (693)
.....|.++..+|++.+|++|..++.|.|-...... .-.+..+..-+-.+.|++..+
T Consensus 590 -dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~-kyqlhlheScVLSlKFa~cGk 646 (705)
T KOG0639|consen 590 -DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-KYQLHLHESCVLSLKFAYCGK 646 (705)
T ss_pred -hhhhhheecccCCCccceeeecccCcEEEEecCCcc-ceeecccccEEEEEEecccCc
Confidence 112269999999999999999999999998877643 333334444455566766543
No 146
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=1.7e-17 Score=172.20 Aligned_cols=120 Identities=23% Similarity=0.155 Sum_probs=101.9
Q ss_pred CcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCC
Q 005506 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS 438 (693)
Q Consensus 359 ~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p 438 (693)
....+..+|.+||.+|..++ |.+||++|++||+++|+. +++|+||||||... ||+...+.||++||+|+|
T Consensus 111 ~~k~A~~lK~~GN~~f~~kk-Y~eAIkyY~~AI~l~p~e------piFYsNraAcY~~l---gd~~~Vied~TkALEl~P 180 (606)
T KOG0547|consen 111 RLKYAAALKTKGNKFFRNKK-YDEAIKYYTQAIELCPDE------PIFYSNRAACYESL---GDWEKVIEDCTKALELNP 180 (606)
T ss_pred HHHHHHHHHhhhhhhhhccc-HHHHHHHHHHHHhcCCCC------chhhhhHHHHHHHH---hhHHHHHHHHHHHhhcCc
Confidence 46678899999999999999 999999999999999987 79999999999995 669999999999999999
Q ss_pred CCcchhhhHHHHHHHhccHHHHHHHHHHHcccCC-CCchhHHHHHHHHHHH
Q 005506 439 SSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDP-SNSVMAEKVENIKKHI 488 (693)
Q Consensus 439 ~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p-~~~~~~~~~~~l~~~i 488 (693)
+++|||+|||.|+++||++.||+.|+....-++- .|..+...++++-++.
T Consensus 181 ~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~ 231 (606)
T KOG0547|consen 181 DYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQ 231 (606)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHH
Confidence 9999999999999999999999999875543322 2333344555554444
No 147
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=1.9e-17 Score=186.78 Aligned_cols=219 Identities=17% Similarity=0.217 Sum_probs=174.2
Q ss_pred cccceeEEeccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEECCCCcEEEEe-ccCCCcceEEEEEeeCCCCCEEEEEeC
Q 005506 38 RRLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSI-ETGHSANVFCTKFVPETSDELVVSGAG 115 (693)
Q Consensus 38 ~~l~~~~~l~gH~~~V~~l~~s~~-g~~LaSgs~Dg~I~IWd~~~~~~~~~l-~~~h~~~I~sv~f~p~~~~~~l~sgs~ 115 (693)
....++.++..|+|.|..|.|++. +++||+|++||.|.|||+...+...+. ...-.+.|.+++|+..- .++|++++.
T Consensus 104 ~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkv-qhILAS~s~ 182 (1049)
T KOG0307|consen 104 ASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKV-SHILASGSP 182 (1049)
T ss_pred cchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhh-hHHhhccCC
Confidence 345567778899999999999996 559999999999999999865443333 22356789999999874 689999999
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCCceeeccCCC--CeEEEEEecCCCcEEEEEeCCC---cEEEEeCCCCCCCCCCCCCC
Q 005506 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR--RVKKLAVEVGNPHVVWSASEDG---TLRQHDFRQGSSCPPAGSSH 190 (693)
Q Consensus 116 Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~--~V~~la~sp~~~~~l~Sgs~Dg---~V~lwDlr~~~~~~~~~~~~ 190 (693)
+|.+.|||++.. +++..+..|.. .+..|+|+|++...|+++++|. .|.+||+|.....
T Consensus 183 sg~~~iWDlr~~----------~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP------- 245 (1049)
T KOG0307|consen 183 SGRAVIWDLRKK----------KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSP------- 245 (1049)
T ss_pred CCCceeccccCC----------CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCc-------
Confidence 999999999965 34555554544 4778999999888898888764 7999999986533
Q ss_pred cccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccC
Q 005506 191 QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM 270 (693)
Q Consensus 191 ~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~ 270 (693)
+.....|...|.++.|++.+.++|++++.|+.|.+|+..+++.+..+.
T Consensus 246 -----------------~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p--------------- 293 (1049)
T KOG0307|consen 246 -----------------LKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP--------------- 293 (1049)
T ss_pred -----------------hhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC---------------
Confidence 222346778899999999988999999999999999999987654431
Q ss_pred ccccCCCCccceEEEEEcCCCC-EEEEEecCCcEEEEECCCCC
Q 005506 271 HLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 271 ~~~~~~~~~~~V~~v~fspdg~-~L~sgs~Dg~V~lwdl~~~~ 312 (693)
..+.++..+.|.|... .+++++-||.|-||.+.+..
T Consensus 294 ------~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 294 ------AQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ------CCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 1223789999999877 66677779999999998855
No 148
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.6e-16 Score=163.66 Aligned_cols=236 Identities=17% Similarity=0.196 Sum_probs=168.2
Q ss_pred cccccchhhhcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECC---------CCcEEEEeccCCCcceEE
Q 005506 28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS---------SRKLLHSIETGHSANVFC 98 (693)
Q Consensus 28 ~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~---------~~~~~~~l~~~h~~~I~s 98 (693)
..+.+| .+.++.++..+.+|-..|+||.|+.||.+|+|||.||.|.+|.+. +-++++.+ ..|+-+|++
T Consensus 103 g~lYlW--elssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f-~~HtlsITD 179 (476)
T KOG0646|consen 103 GNLYLW--ELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIF-SDHTLSITD 179 (476)
T ss_pred CcEEEE--EeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeee-ccCcceeEE
Confidence 444444 577888889999999999999999999999999999999999864 23566777 799999999
Q ss_pred EEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 005506 99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR 178 (693)
Q Consensus 99 v~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr 178 (693)
+...+.+....|+|++.|.++++||+..+ ..+.++. ....++++++.| ....+..|+++|.|.+.++.
T Consensus 180 l~ig~Gg~~~rl~TaS~D~t~k~wdlS~g----------~LLlti~-fp~si~av~lDp-ae~~~yiGt~~G~I~~~~~~ 247 (476)
T KOG0646|consen 180 LQIGSGGTNARLYTASEDRTIKLWDLSLG----------VLLLTIT-FPSSIKAVALDP-AERVVYIGTEEGKIFQNLLF 247 (476)
T ss_pred EEecCCCccceEEEecCCceEEEEEeccc----------eeeEEEe-cCCcceeEEEcc-cccEEEecCCcceEEeeehh
Confidence 99887744679999999999999999965 3344443 467899999999 66788899999999999886
Q ss_pred CCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCcc--ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCccccc
Q 005506 179 QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL--SLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK 256 (693)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~--~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~ 256 (693)
....... ......... ....+....+|.. .|+|++++-+ +.+|++|+.||.|.|||+.+.+.++++.
T Consensus 248 ~~~~~~~------~v~~k~~~~---~~t~~~~~~Gh~~~~~ITcLais~D-gtlLlSGd~dg~VcvWdi~S~Q~iRtl~- 316 (476)
T KOG0646|consen 248 KLSGQSA------GVNQKGRHE---ENTQINVLVGHENESAITCLAISTD-GTLLLSGDEDGKVCVWDIYSKQCIRTLQ- 316 (476)
T ss_pred cCCcccc------ccccccccc---ccceeeeeccccCCcceeEEEEecC-ccEEEeeCCCCCEEEEecchHHHHHHHh-
Confidence 5431100 000000000 0111222234444 8999999997 7899999999999999998764443321
Q ss_pred CCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEe-cCCcEEEEECC
Q 005506 257 RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVN 309 (693)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs-~Dg~V~lwdl~ 309 (693)
+..++|+.+.+.|--+-.+.+. ....+-.|++.
T Consensus 317 --------------------~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lk 350 (476)
T KOG0646|consen 317 --------------------TSKGPVTNLQINPLERGIILFEHKQPSLPNPHLK 350 (476)
T ss_pred --------------------hhccccceeEeeccccceecccccCccCCchHhh
Confidence 1223688888877544444332 23334444443
No 149
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.70 E-value=3.7e-16 Score=160.47 Aligned_cols=196 Identities=21% Similarity=0.293 Sum_probs=145.6
Q ss_pred cCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCC
Q 005506 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 169 (693)
Q Consensus 90 ~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~D 169 (693)
..+.+.|++++|+|..+-.++++|..-|.|-+||+..... ....+..+..|+.+|.+|.|+|.+...|.+.+.|
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~------d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD 256 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK------DKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD 256 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC------ccCceEEeccCCccccceEecCCChhheeeeccC
Confidence 4688999999999997447999999999999999963211 1255778889999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCCCC---------------------CCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCC
Q 005506 170 GTLRQHDFRQGSSCPPA---------------------GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRP 228 (693)
Q Consensus 170 g~V~lwDlr~~~~~~~~---------------------~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~ 228 (693)
|+|++-|+.....-... ..+..-+.-.+++++++.. .+.....|...|.+++++|..+
T Consensus 257 GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s-~~~~~~lh~kKI~sv~~NP~~p 335 (498)
T KOG4328|consen 257 GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGS-EYENLRLHKKKITSVALNPVCP 335 (498)
T ss_pred ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCc-cchhhhhhhcccceeecCCCCc
Confidence 99999999865311000 0000111223455655543 1223334556899999999999
Q ss_pred cEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEEC
Q 005506 229 HLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV 308 (693)
Q Consensus 229 ~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl 308 (693)
.+|||++.|++++|||+|....-.+ +.+ ..-.|.. .|.++.|||.|-.|++.+.|..|+|||.
T Consensus 336 ~~laT~s~D~T~kIWD~R~l~~K~s--------p~l--------st~~Hrr-sV~sAyFSPs~gtl~TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 336 WFLATASLDQTAKIWDLRQLRGKAS--------PFL--------STLPHRR-SVNSAYFSPSGGTLLTTCQDNEIRVFDS 398 (498)
T ss_pred hheeecccCcceeeeehhhhcCCCC--------cce--------ecccccc-eeeeeEEcCCCCceEeeccCCceEEeec
Confidence 9999999999999999997643221 011 1122333 5999999999888999999999999998
Q ss_pred C
Q 005506 309 N 309 (693)
Q Consensus 309 ~ 309 (693)
.
T Consensus 399 s 399 (498)
T KOG4328|consen 399 S 399 (498)
T ss_pred c
Confidence 4
No 150
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.70 E-value=6.7e-16 Score=155.76 Aligned_cols=180 Identities=20% Similarity=0.251 Sum_probs=144.9
Q ss_pred cCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCC
Q 005506 90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 169 (693)
Q Consensus 90 ~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~D 169 (693)
.||+++|..++|+|.+ ++.||||+.|.+|.||.+.... ......+++..+.+|..+|--++|+|.-.++|+|++.|
T Consensus 78 ~GHt~~vLDi~w~Pfn-D~vIASgSeD~~v~vW~IPe~~---l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D 153 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFN-DCVIASGSEDTKVMVWQIPENG---LTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD 153 (472)
T ss_pred cCccccccccccCccC-CceeecCCCCceEEEEECCCcc---cccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence 6999999999999996 8999999999999999998532 12223478899999999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC
Q 005506 170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (693)
Q Consensus 170 g~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~ 249 (693)
.+|.+|++.++... + .. .|...|.+++|+.+ |.+|++.+.|..|||||.|.++
T Consensus 154 n~v~iWnv~tgeal--------------i-----------~l-~hpd~i~S~sfn~d-Gs~l~TtckDKkvRv~dpr~~~ 206 (472)
T KOG0303|consen 154 NTVSIWNVGTGEAL--------------I-----------TL-DHPDMVYSMSFNRD-GSLLCTTCKDKKVRVIDPRRGT 206 (472)
T ss_pred ceEEEEeccCCcee--------------e-----------ec-CCCCeEEEEEeccC-CceeeeecccceeEEEcCCCCc
Confidence 99999999988632 1 11 26778999999997 7899999999999999999886
Q ss_pred CCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEec---CCcEEEEECCCCCcceEEeec
Q 005506 250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS---GEHVYLMDVNHAGGRAMRYTV 320 (693)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~---Dg~V~lwdl~~~~~~~~~~~~ 320 (693)
.+..- .+|.+..-..+.|-.+|..+-+|-+ +.++-|||-.+.+.+......
T Consensus 207 ~v~e~--------------------~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~el 260 (472)
T KOG0303|consen 207 VVSEG--------------------VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQEL 260 (472)
T ss_pred Eeeec--------------------ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEe
Confidence 55321 2344444567888899995555544 789999999987766554443
No 151
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.70 E-value=6e-17 Score=176.00 Aligned_cols=277 Identities=17% Similarity=0.232 Sum_probs=186.6
Q ss_pred hhhcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEe
Q 005506 35 SLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA 114 (693)
Q Consensus 35 ~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs 114 (693)
..++..+.++.|.||..+|.|..|...|.++++|++|..|+||..++..++.+. .||.+.|+.++.+.+ +.++++++
T Consensus 175 tmvqkmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~-rGhs~ditdlavs~~--n~~iaaaS 251 (1113)
T KOG0644|consen 175 TMVQKMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASC-RGHSGDITDLAVSSN--NTMIAAAS 251 (1113)
T ss_pred HHHHHHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccC-CCCccccchhccchh--hhhhhhcc
Confidence 467888888899999999999999999999999999999999999999999999 899999999999877 58999999
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC-CCCCCC-CCCCCCc-
Q 005506 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR-QGSSCP-PAGSSHQ- 191 (693)
Q Consensus 115 ~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr-~~~~~~-~~~~~~~- 191 (693)
.|..|++|.+... .++..+.+|++.|++|+|+| +.+.+.||++++||.| .....+ .......
T Consensus 252 ~D~vIrvWrl~~~----------~pvsvLrghtgavtaiafsP-----~~sss~dgt~~~wd~r~~~~~y~prp~~~~~~ 316 (1113)
T KOG0644|consen 252 NDKVIRVWRLPDG----------APVSVLRGHTGAVTAIAFSP-----RASSSDDGTCRIWDARLEPRIYVPRPLKFTEK 316 (1113)
T ss_pred cCceEEEEecCCC----------chHHHHhccccceeeeccCc-----cccCCCCCceEeccccccccccCCCCCCcccc
Confidence 9999999999865 77999999999999999999 2388999999999998 221111 0000000
Q ss_pred ccceEEEeccCCceeeec---CCCCCccceEEEEEcC----------CCCcEEEEEeCCCcEEEEecCCCCCCcccccCC
Q 005506 192 ECRNILLDLRCGAKRSLA---DPPKQTLSLKSCDISS----------TRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRM 258 (693)
Q Consensus 192 ~~~~~l~~~~~~~~~~l~---~~~~~~~~v~sl~~sp----------~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~ 258 (693)
.....+..-..+ ..... .........-+++|.. +-..+.+++-.+-.+.+|++-++..+...
T Consensus 317 ~~~~s~~~~~~~-~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l---- 391 (1113)
T KOG0644|consen 317 DLVDSILFENNG-DRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNL---- 391 (1113)
T ss_pred cceeeeeccccc-cccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhh----
Confidence 000000000000 00000 0000011111222222 21234444555666677777665332111
Q ss_pred CCCCcccccccCccccCCCCccceEEEEEcCCCCEE-EEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCccc
Q 005506 259 SPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEV-LLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLE 337 (693)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L-~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~ 337 (693)
.+|.. .+..+.++|-+..+ .+++.||...|||+-.+-.....+......-..+|+++...+.
T Consensus 392 ----------------~ghsd-~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~ 454 (1113)
T KOG0644|consen 392 ----------------MGHSD-EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIA 454 (1113)
T ss_pred ----------------ccccc-ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEe
Confidence 23444 47889999976655 5777899999999998765555554334444566888877766
Q ss_pred ccCCcccccccccc
Q 005506 338 LQPPIHDFLQTNIR 351 (693)
Q Consensus 338 ~~~~~~~~~~~~~~ 351 (693)
.....++....|+.
T Consensus 455 lsd~hgql~i~g~g 468 (1113)
T KOG0644|consen 455 LSDDHGQLYILGTG 468 (1113)
T ss_pred cCCCCCceEEeccC
Confidence 66666655554443
No 152
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.70 E-value=3.8e-16 Score=167.08 Aligned_cols=230 Identities=18% Similarity=0.285 Sum_probs=175.0
Q ss_pred cccccchhhhcccceeEEeccCCCcEEEEEECC---CCCEEEEEeCCCcEEEEECCCC-cEEEEeccCCCcceEEEEEee
Q 005506 28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNS---KGSLLISGSDDTHINVWSYSSR-KLLHSIETGHSANVFCTKFVP 103 (693)
Q Consensus 28 ~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~---~g~~LaSgs~Dg~I~IWd~~~~-~~~~~l~~~h~~~I~sv~f~p 103 (693)
.++++++ .+.+...-.++.|...|.||.|+. ..++||+++.|..|.|||+... .++.++ .+|...|++|+|.-
T Consensus 481 GnlrVy~--Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtl-d~HSssITsvKFa~ 557 (1080)
T KOG1408|consen 481 GNLRVYD--LQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTL-DGHSSSITSVKFAC 557 (1080)
T ss_pred CceEEEE--ehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhh-cccccceeEEEEee
Confidence 4555554 445555666789999999999996 3579999999999999999765 355666 79999999999998
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCC
Q 005506 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (693)
Q Consensus 104 ~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~ 183 (693)
......+++++.|..|. |+.....+.. ..-+..+.......++.+++.| ...++++++.|..|+|||+..++..
T Consensus 558 ~gln~~MiscGADksim-Fr~~qk~~~g----~~f~r~t~t~~ktTlYDm~Vdp-~~k~v~t~cQDrnirif~i~sgKq~ 631 (1080)
T KOG1408|consen 558 NGLNRKMISCGADKSIM-FRVNQKASSG----RLFPRHTQTLSKTTLYDMAVDP-TSKLVVTVCQDRNIRIFDIESGKQV 631 (1080)
T ss_pred cCCceEEEeccCchhhh-eehhccccCc----eeccccccccccceEEEeeeCC-CcceEEEEecccceEEEecccccee
Confidence 85447899999998876 4444321110 0011111112245789999999 6688999999999999999987633
Q ss_pred CCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCc
Q 005506 184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC 263 (693)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~ 263 (693)
+.+.....+......+...|. +.|||+.+.|.++.+||.-+++ |
T Consensus 632 ----------------------k~FKgs~~~eG~lIKv~lDPS-giY~atScsdktl~~~Df~sgE-------------c 675 (1080)
T KOG1408|consen 632 ----------------------KSFKGSRDHEGDLIKVILDPS-GIYLATSCSDKTLCFVDFVSGE-------------C 675 (1080)
T ss_pred ----------------------eeecccccCCCceEEEEECCC-ccEEEEeecCCceEEEEeccch-------------h
Confidence 122333455566778889997 7999999999999999998874 4
Q ss_pred ccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCC
Q 005506 264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~ 310 (693)
+..+ .||.. .||.+.|.+|-++|++.++||.|.+|.+..
T Consensus 676 vA~m-------~GHsE-~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 676 VAQM-------TGHSE-AVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred hhhh-------cCcch-heeeeeecccchhheeecCCceEEEEECch
Confidence 4433 45655 599999999999999999999999999876
No 153
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.70 E-value=3e-16 Score=154.33 Aligned_cols=200 Identities=22% Similarity=0.274 Sum_probs=144.6
Q ss_pred CcchhhhhcccccCCCCCcCcccccchhhhcccceeEEeccCCCcEEEEEECCCCC--EEEEEeCCCcEEEEECCCCcEE
Q 005506 8 DGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGS--LLISGSDDTHINVWSYSSRKLL 85 (693)
Q Consensus 8 ~~~~~~~~~~r~~~~~~~~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~--~LaSgs~Dg~I~IWd~~~~~~~ 85 (693)
.+.|+.+--.+.+--+...+.++++++ .++-.....|-.|.+.|++|.|.+.-. .|++|++||.|.+|+.....++
T Consensus 43 ~~sitavAVs~~~~aSGssDetI~IYD--m~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~ 120 (362)
T KOG0294|consen 43 AGSITALAVSGPYVASGSSDETIHIYD--MRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELL 120 (362)
T ss_pred ccceeEEEecceeEeccCCCCcEEEEe--ccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEe
Confidence 555555555555555566677888877 345556777788999999999999764 8999999999999999999999
Q ss_pred EEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEec--------
Q 005506 86 HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV-------- 157 (693)
Q Consensus 86 ~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp-------- 157 (693)
.++ .+|.+.|+.++.+|. +.+-++.+.|+.+++||+-++..-. +..+ ....+.|.|+|
T Consensus 121 ~sl-K~H~~~Vt~lsiHPS--~KLALsVg~D~~lr~WNLV~Gr~a~--------v~~L---~~~at~v~w~~~Gd~F~v~ 186 (362)
T KOG0294|consen 121 KSL-KAHKGQVTDLSIHPS--GKLALSVGGDQVLRTWNLVRGRVAF--------VLNL---KNKATLVSWSPQGDHFVVS 186 (362)
T ss_pred eee-cccccccceeEecCC--CceEEEEcCCceeeeehhhcCccce--------eecc---CCcceeeEEcCCCCEEEEE
Confidence 999 799999999999999 6899999999999999998643211 1111 11111233443
Q ss_pred ------------------------------CCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceee
Q 005506 158 ------------------------------GNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (693)
Q Consensus 158 ------------------------------~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 207 (693)
.++..+++|+.|+.|++||..... .
T Consensus 187 ~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~-------------------------~ 241 (362)
T KOG0294|consen 187 GRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDT-------------------------P 241 (362)
T ss_pred eccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCc-------------------------c
Confidence 233455555566666666654422 2
Q ss_pred ecCCCCCccceEEEEE--cCCCCcEEEEEeCCCcEEEEecCCCC
Q 005506 208 LADPPKQTLSLKSCDI--SSTRPHLLLVGGSDAFARLYDRRMLP 249 (693)
Q Consensus 208 l~~~~~~~~~v~sl~~--sp~~~~~Latgs~Dg~IriwD~r~~~ 249 (693)
+.....|...|..+.+ +|. +.+|+++++||.|+|||+++..
T Consensus 242 ~~~~~AH~~RVK~i~~~~~~~-~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 242 LTEFLAHENRVKDIASYTNPE-HEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred ceeeecchhheeeeEEEecCC-ceEEEEeccCceEEEEEccccc
Confidence 3344467778888874 454 6899999999999999999753
No 154
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.70 E-value=5.8e-15 Score=154.11 Aligned_cols=262 Identities=14% Similarity=0.144 Sum_probs=162.4
Q ss_pred cccccchhhhcccceeEEeccCCCcEEEEEECCCCCEE-EEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCC
Q 005506 28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS 106 (693)
Q Consensus 28 ~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~L-aSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~ 106 (693)
..+.+|+. ...++...+.+|.. +.++.|+|+|..+ ++++.++.|++||+.+++.+..+. .+. .+..+.|+|+
T Consensus 11 ~~v~~~d~--~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~-~~~~~~~~~~-- 83 (300)
T TIGR03866 11 NTISVIDT--ATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP-SGP-DPELFALHPN-- 83 (300)
T ss_pred CEEEEEEC--CCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc-CCC-CccEEEECCC--
Confidence 45555543 34556777776654 6789999999876 677789999999999988877773 333 3567899998
Q ss_pred CCEE-EEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCC-cEEEEeCCCCCCCC
Q 005506 107 DELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-TLRQHDFRQGSSCP 184 (693)
Q Consensus 107 ~~~l-~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg-~V~lwDlr~~~~~~ 184 (693)
++.+ ++++.|+.|++||+... ..+..+. +...+..++|+| ++.++++++.++ .+.+||.++.....
T Consensus 84 g~~l~~~~~~~~~l~~~d~~~~----------~~~~~~~-~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~ 151 (300)
T TIGR03866 84 GKILYIANEDDNLVTVIDIETR----------KVLAEIP-VGVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVD 151 (300)
T ss_pred CCEEEEEcCCCCeEEEEECCCC----------eEEeEee-CCCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEE
Confidence 4555 55567899999999853 2233333 223467788888 556777776664 46667876543210
Q ss_pred CC-------------------CCCCcccceEEEeccCCceeeecCCC-----CCccceEEEEEcCCCCcEEEEEeCCCcE
Q 005506 185 PA-------------------GSSHQECRNILLDLRCGAKRSLADPP-----KQTLSLKSCDISSTRPHLLLVGGSDAFA 240 (693)
Q Consensus 185 ~~-------------------~~~~~~~~~~l~~~~~~~~~~l~~~~-----~~~~~v~sl~~sp~~~~~Latgs~Dg~I 240 (693)
.. ..........+|++.++......... ........++|+|++...+++.+.++.|
T Consensus 152 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i 231 (300)
T TIGR03866 152 NVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRV 231 (300)
T ss_pred EEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeE
Confidence 00 00001122334555544321111100 0112335688999854334555667789
Q ss_pred EEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEe-cCCcEEEEECCCCCcceEEee
Q 005506 241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHAGGRAMRYT 319 (693)
Q Consensus 241 riwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs-~Dg~V~lwdl~~~~~~~~~~~ 319 (693)
.+||+++.+..... . .+ ..+.+++|+|+|++|+++. .++.|.+||+.+++....+ .
T Consensus 232 ~v~d~~~~~~~~~~-------------~------~~---~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~-~ 288 (300)
T TIGR03866 232 AVVDAKTYEVLDYL-------------L------VG---QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI-K 288 (300)
T ss_pred EEEECCCCcEEEEE-------------E------eC---CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE-E
Confidence 99999865432111 0 01 1478999999999998875 5899999999996643333 3
Q ss_pred cCCCceeEEecc
Q 005506 320 VGDASKIMSFTP 331 (693)
Q Consensus 320 ~~~~~~~~~~~p 331 (693)
.+..+..++++|
T Consensus 289 ~~~~~~~~~~~~ 300 (300)
T TIGR03866 289 VGRLPWGVVVRP 300 (300)
T ss_pred cccccceeEeCC
Confidence 345555555543
No 155
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.69 E-value=2.5e-16 Score=155.66 Aligned_cols=240 Identities=17% Similarity=0.244 Sum_probs=166.5
Q ss_pred cccceeEEeccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEECCCCcEEEEec--cCCCcceEEEEEeeCCCCCEEEEEe
Q 005506 38 RRLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSIE--TGHSANVFCTKFVPETSDELVVSGA 114 (693)
Q Consensus 38 ~~l~~~~~l~gH~~~V~~l~~s~~-g~~LaSgs~Dg~I~IWd~~~~~~~~~l~--~~h~~~I~sv~f~p~~~~~~l~sgs 114 (693)
.+.++...+.||.+.|+.|.+.|. .++|+++|.|..|++|++.++.++..+- .+|.+.|.++.|+++ +.+|++|+
T Consensus 123 ~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~--gd~i~ScG 200 (385)
T KOG1034|consen 123 VSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLD--GDRIASCG 200 (385)
T ss_pred chhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCC--CCeeeccC
Confidence 344556678899999999999996 5799999999999999999999998772 479999999999999 68999999
Q ss_pred CCCcEEEEEcCCCCC--CCCC------CCCC---------CCc-eeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 005506 115 GDAEVRLFNLSRFSG--RGLD------DNAI---------TPS-ALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD 176 (693)
Q Consensus 115 ~Dg~V~vwdl~~~~~--~~~~------~~~~---------~~~-~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwD 176 (693)
.|.++++|++....- .... .... -|. .+-.-|...|-|+.|. +++++|-|.++.|..|.
T Consensus 201 mDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~---gd~ilSkscenaI~~w~ 277 (385)
T KOG1034|consen 201 MDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF---GDFILSKSCENAIVCWK 277 (385)
T ss_pred CcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH---hhheeecccCceEEEEe
Confidence 999999999983210 0000 0000 011 1223478888888885 37888999999999998
Q ss_pred CCC-CCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccc
Q 005506 177 FRQ-GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ 255 (693)
Q Consensus 177 lr~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~ 255 (693)
.-. .+......... .+..++-. ...+.-.......+|+|. ..+||.|...|.|++||++...+.
T Consensus 278 pgkl~e~~~~vkp~e-s~~Ti~~~---------~~~~~c~iWfirf~~d~~-~~~la~gnq~g~v~vwdL~~~ep~---- 342 (385)
T KOG1034|consen 278 PGKLEESIHNVKPPE-SATTILGE---------FDYPMCDIWFIRFAFDPW-QKMLALGNQSGKVYVWDLDNNEPP---- 342 (385)
T ss_pred cchhhhhhhccCCCc-cceeeeeE---------eccCccceEEEEEeecHH-HHHHhhccCCCcEEEEECCCCCCc----
Confidence 732 22111000000 01111110 111111223345567786 689999999999999999976542
Q ss_pred cCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCC
Q 005506 256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~ 310 (693)
.|.+. . +...+..|...+|+.||..|+..+.|++|.-||-.+
T Consensus 343 ------~~ttl-----~--~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv~ 384 (385)
T KOG1034|consen 343 ------KCTTL-----T--HSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRVS 384 (385)
T ss_pred ------cCceE-----E--eccccceeeeeeecccCcEEEEEeCCCcEEEEEeec
Confidence 11111 1 112333689999999999999999999999998643
No 156
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.69 E-value=4.5e-15 Score=153.85 Aligned_cols=234 Identities=17% Similarity=0.260 Sum_probs=173.2
Q ss_pred EeccCC-CcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 005506 45 ELEGHQ-GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 123 (693)
Q Consensus 45 ~l~gH~-~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwd 123 (693)
.++++. .-|.|++|.++|. ++||..+|.|.||+..+.+..+... .|.+.|++++...+ | .|++|+.|..|..||
T Consensus 240 ~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~--G-tllSGgKDRki~~Wd 314 (626)
T KOG2106|consen 240 IFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRD--G-TLLSGGKDRKIILWD 314 (626)
T ss_pred ccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecC--c-cEeecCccceEEecc
Confidence 445543 6799999999997 6799999999999998888877774 99999999999987 3 667799999999999
Q ss_pred cCCCCCCCC------------------------------CCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEE
Q 005506 124 LSRFSGRGL------------------------------DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR 173 (693)
Q Consensus 124 l~~~~~~~~------------------------------~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~ 173 (693)
-.....+.. ............+|......++.+| +.++|+|++.|+.|+
T Consensus 315 ~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~ 393 (626)
T KOG2106|consen 315 DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVR 393 (626)
T ss_pred ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceEE
Confidence 442211110 0000112234457888899999999 667888999999999
Q ss_pred EEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcc
Q 005506 174 QHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS 253 (693)
Q Consensus 174 lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~ 253 (693)
+|+ .+ ..+|.... ..++.|+.|+|. + .+|+|...|...+.|..+...+.
T Consensus 394 lW~---~~-------------k~~wt~~~------------~d~~~~~~fhps-g-~va~Gt~~G~w~V~d~e~~~lv~- 442 (626)
T KOG2106|consen 394 LWN---DH-------------KLEWTKII------------EDPAECADFHPS-G-VVAVGTATGRWFVLDTETQDLVT- 442 (626)
T ss_pred Ecc---CC-------------ceeEEEEe------------cCceeEeeccCc-c-eEEEeeccceEEEEecccceeEE-
Confidence 999 22 12332111 246789999997 4 99999999999999998732211
Q ss_pred cccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEe--ecCCCceeEEecc
Q 005506 254 CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRY--TVGDASKIMSFTP 331 (693)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~--~~~~~~~~~~~~p 331 (693)
+ +.. +.+++.++|+|+|.+|++|+.|+.||||.+...+...... .++.++..+.|++
T Consensus 443 ~--------------------~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~ 501 (626)
T KOG2106|consen 443 I--------------------HTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSS 501 (626)
T ss_pred E--------------------Eec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecC
Confidence 1 111 3379999999999999999999999999998866554433 3345666777887
Q ss_pred CCCcc
Q 005506 332 TLNGL 336 (693)
Q Consensus 332 ~~~g~ 336 (693)
+.+-+
T Consensus 502 Ds~~~ 506 (626)
T KOG2106|consen 502 DSQFL 506 (626)
T ss_pred CCceE
Confidence 75544
No 157
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=2.1e-15 Score=159.19 Aligned_cols=248 Identities=15% Similarity=0.212 Sum_probs=172.9
Q ss_pred eeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 005506 42 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 121 (693)
Q Consensus 42 ~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~v 121 (693)
+...++||++.|.||+..|.|.+||+|++||+|+||.+.++.|+.++. ..+.|.||+|+|..+-.+||++ ....+.|
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~--~d~~I~~vaw~P~~~~~vLAvA-~~~~~~i 468 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ--FDSEIRSVAWNPLSDLCVLAVA-VGECVLI 468 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe--ecceeEEEEecCCCCceeEEEE-ecCceEE
Confidence 455688999999999999999999999999999999999999999883 5678999999999744445444 4444666
Q ss_pred EEcCCCCC-------CCCCCC--------------------CCCCceeeccCCCCeEEEEEecCCCcEEEEEeCC---Cc
Q 005506 122 FNLSRFSG-------RGLDDN--------------------AITPSALYQCHTRRVKKLAVEVGNPHVVWSASED---GT 171 (693)
Q Consensus 122 wdl~~~~~-------~~~~~~--------------------~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~D---g~ 171 (693)
-+..-+.. ..+... ...-+...-.|...|+.|.|+- .+.+|++...+ ..
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-kGDYlatV~~~~~~~~ 547 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-KGDYLATVMPDSGNKS 547 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-CCceEEEeccCCCcce
Confidence 65442210 000000 0011234446889999999998 77888887664 46
Q ss_pred EEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCC
Q 005506 172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL 251 (693)
Q Consensus 172 V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~ 251 (693)
|.|+++...... ..+......+.++.|+|..+ +|++++ ...|||||+-....+
T Consensus 548 VliHQLSK~~sQ-------------------------~PF~kskG~vq~v~FHPs~p-~lfVaT-q~~vRiYdL~kqelv 600 (733)
T KOG0650|consen 548 VLIHQLSKRKSQ-------------------------SPFRKSKGLVQRVKFHPSKP-YLFVAT-QRSVRIYDLSKQELV 600 (733)
T ss_pred EEEEeccccccc-------------------------CchhhcCCceeEEEecCCCc-eEEEEe-ccceEEEehhHHHHH
Confidence 888888654421 11112345688999999865 455544 468999999764333
Q ss_pred cccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcce-EEeecCCCceeEEec
Q 005506 252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRA-MRYTVGDASKIMSFT 330 (693)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~-~~~~~~~~~~~~~~~ 330 (693)
..+. + ...+|.+++++|.|..|++|+.|+.+..||+.-+..+- .+-.+....+.++|+
T Consensus 601 KkL~-------------t--------g~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H 659 (733)
T KOG0650|consen 601 KKLL-------------T--------GSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFH 659 (733)
T ss_pred HHHh-------------c--------CCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhc
Confidence 2211 0 11269999999999999999999999999998765442 233445667778888
Q ss_pred cCCCcccccCC
Q 005506 331 PTLNGLELQPP 341 (693)
Q Consensus 331 p~~~g~~~~~~ 341 (693)
+..+-.+....
T Consensus 660 ~ryPLfas~sd 670 (733)
T KOG0650|consen 660 KRYPLFASGSD 670 (733)
T ss_pred cccceeeeecC
Confidence 87665544443
No 158
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.68 E-value=2e-15 Score=161.91 Aligned_cols=286 Identities=21% Similarity=0.278 Sum_probs=192.7
Q ss_pred CcCcccccchhhhcccceeEEeccCCCcEEEEEECCCCC---EEEEEeCCCcEEEEECCCCc------------------
Q 005506 25 DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGS---LLISGSDDTHINVWSYSSRK------------------ 83 (693)
Q Consensus 25 ~~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~---~LaSgs~Dg~I~IWd~~~~~------------------ 83 (693)
.....+.++....++++...+|+||++-|.+|+|...+. +|||+|.|..|+||.+.-+.
T Consensus 166 gs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~ 245 (764)
T KOG1063|consen 166 GSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLP 245 (764)
T ss_pred CcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCc
Confidence 344566667667788999999999999999999998544 89999999999999764211
Q ss_pred ------EEE------EeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCC--------------------
Q 005506 84 ------LLH------SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG-------------------- 131 (693)
Q Consensus 84 ------~~~------~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~-------------------- 131 (693)
.+. .+..||.+.|.++.|+|. +..|++++.|.++.+|.....++.=
T Consensus 246 ~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~--~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~l 323 (764)
T KOG1063|consen 246 VFMILEEIQYRISFEALLMGHEDWVYSVWWHPE--GLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGL 323 (764)
T ss_pred eeeeeeeEEEEEehhhhhcCcccceEEEEEccc--hhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEE
Confidence 111 223599999999999999 5789999999999999877542210
Q ss_pred -------------------C---CCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCC----C--
Q 005506 132 -------------------L---DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS----C-- 183 (693)
Q Consensus 132 -------------------~---~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~----~-- 183 (693)
. +...+.....+.+|...|++|+|+| .+.+|+|+|.|.+-|+|---..+. .
T Consensus 324 w~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~q~~wHEiaR 402 (764)
T KOG1063|consen 324 WSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGRQQEWHEIAR 402 (764)
T ss_pred EcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecC-CCCEEEEeccccceeeecccccccceeeecc
Confidence 0 0111223345678999999999999 667888999999999875331100 0
Q ss_pred CCCCCCCcccc----------------------------------------------------------eEEE--eccCC
Q 005506 184 PPAGSSHQECR----------------------------------------------------------NILL--DLRCG 203 (693)
Q Consensus 184 ~~~~~~~~~~~----------------------------------------------------------~~l~--~~~~~ 203 (693)
|++......|. ..++ ...+|
T Consensus 403 PQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G 482 (764)
T KOG1063|consen 403 PQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTG 482 (764)
T ss_pred cccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccc
Confidence 11100000000 0000 00011
Q ss_pred ce-------------eeecC------------------CCCCccceEEEEEcCCCCcEEEEEeCC-----CcEEEEecCC
Q 005506 204 AK-------------RSLAD------------------PPKQTLSLKSCDISSTRPHLLLVGGSD-----AFARLYDRRM 247 (693)
Q Consensus 204 ~~-------------~~l~~------------------~~~~~~~v~sl~~sp~~~~~Latgs~D-----g~IriwD~r~ 247 (693)
.. ..+.. .-+|...|++++.+|+ ++++|+++.. ..|++|+..+
T Consensus 483 ~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~-gnliASaCKS~~~ehAvI~lw~t~~ 561 (764)
T KOG1063|consen 483 GEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPT-GNLIASACKSSLKEHAVIRLWNTAN 561 (764)
T ss_pred cccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCC-CCEEeehhhhCCccceEEEEEeccc
Confidence 10 00011 1257789999999997 7899999864 5699999987
Q ss_pred CCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEe----ecCCC
Q 005506 248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRY----TVGDA 323 (693)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~----~~~~~ 323 (693)
......+ .+|. ..|+.++|||||++|++.+.|.++.||...........+ .|...
T Consensus 562 W~~~~~L--------------------~~Hs-LTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRI 620 (764)
T KOG1063|consen 562 WLQVQEL--------------------EGHS-LTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRI 620 (764)
T ss_pred hhhhhee--------------------cccc-eEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceE
Confidence 6533221 2343 369999999999999999999999999987654333332 22334
Q ss_pred ceeEEeccCCCc
Q 005506 324 SKIMSFTPTLNG 335 (693)
Q Consensus 324 ~~~~~~~p~~~g 335 (693)
+-...|+|+..+
T Consensus 621 IWdcsW~pde~~ 632 (764)
T KOG1063|consen 621 IWDCSWSPDEKY 632 (764)
T ss_pred EEEcccCcccce
Confidence 445567887666
No 159
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.68 E-value=1.4e-15 Score=156.99 Aligned_cols=207 Identities=18% Similarity=0.215 Sum_probs=164.8
Q ss_pred cCcccccchhhhcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCC
Q 005506 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105 (693)
Q Consensus 26 ~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~ 105 (693)
..+.+++|+.. +-.+.+.|++|+..|+++.++....+||+++..|.|.|..+.++.....+..+....|.-+.|+|..
T Consensus 99 ~~~~Vkiwdl~--~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~sk 176 (673)
T KOG4378|consen 99 QSGCVKIWDLR--AKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSK 176 (673)
T ss_pred cCceeeehhhH--HHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeeccccc
Confidence 34677888754 3345677899999999999999999999999999999999999888888844445567789999985
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCC
Q 005506 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP 185 (693)
Q Consensus 106 ~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~ 185 (693)
-.+|.+++.+|.|.+||+...+ +.......|+.+...|+|+|.++.+|++.+.|..|.+||++......
T Consensus 177 -r~lL~~asd~G~VtlwDv~g~s---------p~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~- 245 (673)
T KOG4378|consen 177 -RFLLSIASDKGAVTLWDVQGMS---------PIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD- 245 (673)
T ss_pred -ceeeEeeccCCeEEEEeccCCC---------cccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccc-
Confidence 5788999999999999998642 22344567999999999999999999999999999999998654321
Q ss_pred CCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCccc
Q 005506 186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN 265 (693)
Q Consensus 186 ~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~ 265 (693)
.+ ....+...++|.++ |.+|++|...|.|..||+|+.+. .+.
T Consensus 246 ----------~l---------------~y~~Plstvaf~~~-G~~L~aG~s~G~~i~YD~R~~k~------------Pv~ 287 (673)
T KOG4378|consen 246 ----------RL---------------TYSHPLSTVAFSEC-GTYLCAGNSKGELIAYDMRSTKA------------PVA 287 (673)
T ss_pred ----------ee---------------eecCCcceeeecCC-ceEEEeecCCceEEEEecccCCC------------Cce
Confidence 01 11346789999997 79999999999999999997642 122
Q ss_pred ccccCccccCCCCccceEEEEEcCCC
Q 005506 266 YFCPMHLSEHGRSSLHLTHVTFSPNG 291 (693)
Q Consensus 266 ~~~~~~~~~~~~~~~~V~~v~fspdg 291 (693)
.. ..|.. .|++|+|-|.-
T Consensus 288 v~-------sah~~-sVt~vafq~s~ 305 (673)
T KOG4378|consen 288 VR-------SAHDA-SVTRVAFQPSP 305 (673)
T ss_pred Ee-------eeccc-ceeEEEeeecc
Confidence 21 33444 49999998875
No 160
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.68 E-value=1.5e-15 Score=165.88 Aligned_cols=199 Identities=15% Similarity=0.151 Sum_probs=164.0
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEe--ccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCC
Q 005506 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI--ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 127 (693)
Q Consensus 50 ~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l--~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~ 127 (693)
...+++++.++.|++.+.|...|+|-+|++.+|-....+ ...|.++|++++.... ++.+++++.+|.+.+||+...
T Consensus 448 ~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~--n~~~vsa~~~Gilkfw~f~~k 525 (910)
T KOG1539|consen 448 DINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGT--NRLLVSAGADGILKFWDFKKK 525 (910)
T ss_pred CcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCC--CceEEEccCcceEEEEecCCc
Confidence 368999999999999999999999999999999888877 2579999999999877 689999999999999999964
Q ss_pred CCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceee
Q 005506 128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (693)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 207 (693)
.++..+. -...++.+..+. ...+++.+..|-.|+++|+.+.+.
T Consensus 526 ----------~l~~~l~-l~~~~~~iv~hr-~s~l~a~~~ddf~I~vvD~~t~kv------------------------- 568 (910)
T KOG1539|consen 526 ----------VLKKSLR-LGSSITGIVYHR-VSDLLAIALDDFSIRVVDVVTRKV------------------------- 568 (910)
T ss_pred ----------ceeeeec-cCCCcceeeeee-hhhhhhhhcCceeEEEEEchhhhh-------------------------
Confidence 2233333 345677777776 567888999999999999987542
Q ss_pred ecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEE
Q 005506 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 287 (693)
Q Consensus 208 l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~f 287 (693)
+....+|...|+.++|||+ +++|++++.|++||+||+.++..+..+ +-..+.+++.|
T Consensus 569 vR~f~gh~nritd~~FS~D-grWlisasmD~tIr~wDlpt~~lID~~----------------------~vd~~~~sls~ 625 (910)
T KOG1539|consen 569 VREFWGHGNRITDMTFSPD-GRWLISASMDSTIRTWDLPTGTLIDGL----------------------LVDSPCTSLSF 625 (910)
T ss_pred hHHhhccccceeeeEeCCC-CcEEEEeecCCcEEEEeccCcceeeeE----------------------ecCCcceeeEE
Confidence 2233467889999999998 899999999999999999987544322 22236899999
Q ss_pred cCCCCEEEEEecC-CcEEEEECCC
Q 005506 288 SPNGEEVLLSYSG-EHVYLMDVNH 310 (693)
Q Consensus 288 spdg~~L~sgs~D-g~V~lwdl~~ 310 (693)
||+|.+|++...| .-||+|--.+
T Consensus 626 SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 626 SPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred CCCCCEEEEEEecCceEEEEEchh
Confidence 9999999999988 7899997554
No 161
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.67 E-value=1.1e-15 Score=155.13 Aligned_cols=278 Identities=17% Similarity=0.242 Sum_probs=176.6
Q ss_pred cCcchhhhhcccccCCCCCcCcccccchhhhcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECC------
Q 005506 7 HDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS------ 80 (693)
Q Consensus 7 ~~~~~~~~~~~r~~~~~~~~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~------ 80 (693)
++++.+.-++.|.+....+-... -.++....|..|+..||++.|+|+|.+||||+++|.|.+|-..
T Consensus 30 aT~G~D~~iriW~v~r~~~~~~~--------~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~ 101 (434)
T KOG1009|consen 30 ATAGGDKDIRIWKVNRSEPGGGD--------MKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFD 101 (434)
T ss_pred ecccCccceeeeeeeecCCCCCc--------eeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCcc
Confidence 34444555555555443222211 2345567889999999999999999999999999999999765
Q ss_pred --C-----C--cEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeE
Q 005506 81 --S-----R--KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVK 151 (693)
Q Consensus 81 --~-----~--~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~ 151 (693)
+ . -.+.....+|...|..++|.|+ +.++++|+.|.++++||+..+ .....+..|...|.
T Consensus 102 ~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d--~~~l~s~s~dns~~l~Dv~~G----------~l~~~~~dh~~yvq 169 (434)
T KOG1009|consen 102 ADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD--SNFLVSGSVDNSVRLWDVHAG----------QLLAILDDHEHYVQ 169 (434)
T ss_pred ccchhhhCccceEEEEEecccccchhhhhccCC--CceeeeeeccceEEEEEeccc----------eeEeeccccccccc
Confidence 2 1 1233333689999999999999 699999999999999999975 55788889999999
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceE--EEeccCCceeeecCCCCCccceEEEEEcCCCCc
Q 005506 152 KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI--LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPH 229 (693)
Q Consensus 152 ~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~ 229 (693)
.++|.| -.+++++-+.|...+.+.+.......... .+... ......+....+..-..-......++|+|+ +.
T Consensus 170 gvawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~----~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPd-G~ 243 (434)
T KOG1009|consen 170 GVAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRHG----LDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPD-GS 243 (434)
T ss_pred eeecch-hhhhhhhhccCcccceeeeeeeeeeeeee----eeEeeecccCCCCcceeeeeecCchhhhhhhcccCCC-Cc
Confidence 999999 66889999999877777765543221000 00000 000011111122211222334567899997 66
Q ss_pred EEEEEeC----CC-----cEEEEecCCCC-CCcccccCCCCCCcccccc-------------------------------
Q 005506 230 LLLVGGS----DA-----FARLYDRRMLP-PLTSCQKRMSPPPCVNYFC------------------------------- 268 (693)
Q Consensus 230 ~Latgs~----Dg-----~IriwD~r~~~-~~~~~~~~~~~~~~~~~~~------------------------------- 268 (693)
+|++.+. .+ ..++|+...++ |...+.....+. ..-.++
T Consensus 244 llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~-lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~s 322 (434)
T KOG1009|consen 244 LLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPA-LAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNS 322 (434)
T ss_pred EEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcce-EEEEeeeeEEEeccccccccccccccceEEEEeecce
Confidence 7776542 22 23566655443 211111111100 000000
Q ss_pred ----------cCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCC
Q 005506 269 ----------PMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 269 ----------~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~ 312 (693)
|......-|-. .||.++|+++|.+|+.++.||..-+--+...+
T Consensus 323 vyvydtq~~~P~~~v~nihy~-~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 323 VYVYDTQTLEPLAVVDNIHYS-AITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred EEEeccccccceEEEeeeeee-eecceeecCCCcEEEEeccCCceEEEEEcchh
Confidence 11111112333 68999999999999999999988887777644
No 162
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=1.7e-15 Score=148.89 Aligned_cols=234 Identities=16% Similarity=0.276 Sum_probs=163.6
Q ss_pred cCcccccchhhhcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCC
Q 005506 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105 (693)
Q Consensus 26 ~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~ 105 (693)
.+.++-+|+.... ...+.|.+|..+|+||+||++|++|+|+|.|..|.+||+..+.+++.+ ...++|+.+.|+|..
T Consensus 43 ~nG~vvI~D~~T~--~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri--rf~spv~~~q~hp~k 118 (405)
T KOG1273|consen 43 ANGRVVIYDFDTF--RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI--RFDSPVWGAQWHPRK 118 (405)
T ss_pred cCCcEEEEEcccc--chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE--EccCccceeeecccc
Confidence 4466777775443 467789999999999999999999999999999999999999888776 355666666666643
Q ss_pred ---------------------------------------------CCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCc
Q 005506 106 ---------------------------------------------SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS 140 (693)
Q Consensus 106 ---------------------------------------------~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~ 140 (693)
.|+++++|...|.+.++|..+. +++
T Consensus 119 ~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~----------e~v 188 (405)
T KOG1273|consen 119 RNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETL----------ECV 188 (405)
T ss_pred CCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchh----------eee
Confidence 1467777777777777777653 444
Q ss_pred eeeccCC-CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceE
Q 005506 141 ALYQCHT-RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLK 219 (693)
Q Consensus 141 ~~~~~h~-~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~ 219 (693)
..+.-.+ ..|+.|.++. .+..|+.-+.|..||+|+++.-..+.. .+..+....+.|+ .....-+
T Consensus 189 as~rits~~~IK~I~~s~-~g~~liiNtsDRvIR~ye~~di~~~~r--~~e~e~~~K~qDv------------VNk~~Wk 253 (405)
T KOG1273|consen 189 ASFRITSVQAIKQIIVSR-KGRFLIINTSDRVIRTYEISDIDDEGR--DGEVEPEHKLQDV------------VNKLQWK 253 (405)
T ss_pred eeeeechheeeeEEEEec-cCcEEEEecCCceEEEEehhhhcccCc--cCCcChhHHHHHH------------Hhhhhhh
Confidence 4444334 6788898887 778888999999999999874321100 0000000000000 0123567
Q ss_pred EEEEcCCCCcEEEEEe-CCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEe
Q 005506 220 SCDISSTRPHLLLVGG-SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY 298 (693)
Q Consensus 220 sl~~sp~~~~~Latgs-~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs 298 (693)
+++|+.+ +.++++|+ .-..++||...++..++-+ +|..+.....|.|+|-...+++-
T Consensus 254 ~ccfs~d-geYv~a~s~~aHaLYIWE~~~GsLVKIL--------------------hG~kgE~l~DV~whp~rp~i~si- 311 (405)
T KOG1273|consen 254 KCCFSGD-GEYVCAGSARAHALYIWEKSIGSLVKIL--------------------HGTKGEELLDVNWHPVRPIIASI- 311 (405)
T ss_pred heeecCC-ccEEEeccccceeEEEEecCCcceeeee--------------------cCCchhheeecccccceeeeeec-
Confidence 8999997 56666555 4567899999887655433 33333357789999998877766
Q ss_pred cCCcEEEEECCC
Q 005506 299 SGEHVYLMDVNH 310 (693)
Q Consensus 299 ~Dg~V~lwdl~~ 310 (693)
..|.|++|....
T Consensus 312 ~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 312 ASGVVYIWAVVQ 323 (405)
T ss_pred cCCceEEEEeec
Confidence 789999998776
No 163
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.8e-16 Score=161.82 Aligned_cols=129 Identities=20% Similarity=0.174 Sum_probs=116.0
Q ss_pred ccCcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhcc
Q 005506 357 ATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRI 436 (693)
Q Consensus 357 ~~~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l 436 (693)
...+..++..++.||..|++|+ |..|-++|++||...|.+ .+..+.||.|||+++++++. ..+||.||+.|++|
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~-y~~A~E~Yteal~idP~n--~~~naklY~nra~v~~rLgr---l~eaisdc~~Al~i 316 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGN-YRKAYECYTEALNIDPSN--KKTNAKLYGNRALVNIRLGR---LREAISDCNEALKI 316 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccc-hhHHHHHHHHhhcCCccc--cchhHHHHHHhHhhhcccCC---chhhhhhhhhhhhc
Confidence 4467788999999999999999 999999999999999876 33447899999999999877 88999999999999
Q ss_pred CCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHHHHHHHHHHH
Q 005506 437 DSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAE 492 (693)
Q Consensus 437 ~p~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l~~~i~~~~ 492 (693)
||.++|||.|||+|++.|+++++|.++|+++.+++.+ .+....+.+.+..|++++
T Consensus 317 D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSk 371 (486)
T KOG0550|consen 317 DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSK 371 (486)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999887 667777877777777655
No 164
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=4.2e-15 Score=147.88 Aligned_cols=199 Identities=13% Similarity=0.221 Sum_probs=152.9
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCcee
Q 005506 63 SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSAL 142 (693)
Q Consensus 63 ~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~ 142 (693)
+.+|++-..|.|+|||..+++.+..+ .++...+..++|......+.+.+|+.||+|++||++.... .+...
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~f-k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e--------~a~~~ 111 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEF-KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE--------SARIS 111 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhee-cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh--------hhhee
Confidence 57888989999999999999999999 7999999999999864478999999999999999997532 33455
Q ss_pred eccCC-CCeEEEEEecCCCcEEEEEeC----CCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccc
Q 005506 143 YQCHT-RRVKKLAVEVGNPHVVWSASE----DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLS 217 (693)
Q Consensus 143 ~~~h~-~~V~~la~sp~~~~~l~Sgs~----Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ 217 (693)
+..|. .+..+++..- ..+++++|.+ |-.|.+||+|..+... -.....|...
T Consensus 112 ~~~~~~~~f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l-----------------------~~~~eSH~DD 167 (376)
T KOG1188|consen 112 WTQQSGTPFICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLL-----------------------RQLNESHNDD 167 (376)
T ss_pred ccCCCCCcceEeeccC-cCCeEEeccccccCceEEEEEEeccccchh-----------------------hhhhhhccCc
Confidence 55555 4566666654 5678877764 6689999999876420 1112246778
Q ss_pred eEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCC-CEEEE
Q 005506 218 LKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG-EEVLL 296 (693)
Q Consensus 218 v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg-~~L~s 296 (693)
|+++.|+|.++++|++|+.||.|.|||+...... ...+..+ .....|..+.|..++ +.|.+
T Consensus 168 VT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee---------DaL~~vi---------N~~sSI~~igw~~~~ykrI~c 229 (376)
T KOG1188|consen 168 VTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE---------DALLHVI---------NHGSSIHLIGWLSKKYKRIMC 229 (376)
T ss_pred ceeEEecCCCCCeEEeecccceEEeeecCCCcch---------hhHHHhh---------cccceeeeeeeecCCcceEEE
Confidence 9999999999999999999999999999754211 1112222 122258999999887 45888
Q ss_pred EecCCcEEEEECCCCC
Q 005506 297 SYSGEHVYLMDVNHAG 312 (693)
Q Consensus 297 gs~Dg~V~lwdl~~~~ 312 (693)
-+..+..++|+++.+.
T Consensus 230 lTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 230 LTHMETFAIYELEDGS 245 (376)
T ss_pred EEccCceeEEEccCCC
Confidence 8889999999999854
No 165
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=2.5e-15 Score=154.47 Aligned_cols=225 Identities=14% Similarity=0.187 Sum_probs=169.8
Q ss_pred ccchhhhcccceeEEeccCC-CcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCE
Q 005506 31 QMHSSLVRRLSQERELEGHQ-GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDEL 109 (693)
Q Consensus 31 ~~~~~~i~~l~~~~~l~gH~-~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~ 109 (693)
..|+.....+..++.+.|+. ..+.....++++++||..+..|.|.|....++..+.++ .-.+.|..++|+.+ +..
T Consensus 283 ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~--KieG~v~~~~fsSd--sk~ 358 (514)
T KOG2055|consen 283 YSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF--KIEGVVSDFTFSSD--SKE 358 (514)
T ss_pred EEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee--eeccEEeeEEEecC--CcE
Confidence 34555555555566666765 46778999999999999999999999999999999988 36788999999977 588
Q ss_pred EEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCe--EEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCC
Q 005506 110 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRV--KKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG 187 (693)
Q Consensus 110 l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V--~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~ 187 (693)
|++++.+|.|.+||++.. .++..+.. .+.| ++++.++ ++.+||+|+..|.|.|||..+....
T Consensus 359 l~~~~~~GeV~v~nl~~~----------~~~~rf~D-~G~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~~s~~~s---- 422 (514)
T KOG2055|consen 359 LLASGGTGEVYVWNLRQN----------SCLHRFVD-DGSVHGTSLCISL-NGSYLATGSDSGIVNIYDGNSCFAS---- 422 (514)
T ss_pred EEEEcCCceEEEEecCCc----------ceEEEEee-cCccceeeeeecC-CCceEEeccCcceEEEeccchhhcc----
Confidence 888889999999999975 33555542 2333 5667777 6789999999999999997653211
Q ss_pred CCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeC--CCcEEEEecCCCCCCcccccCCCCCCccc
Q 005506 188 SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS--DAFARLYDRRMLPPLTSCQKRMSPPPCVN 265 (693)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~--Dg~IriwD~r~~~~~~~~~~~~~~~~~~~ 265 (693)
...+++.....-...|+++.|+|+ .++||.++. +..+|+-.+.+......|+...
T Consensus 423 ---------------~~PkPik~~dNLtt~Itsl~Fn~d-~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n------- 479 (514)
T KOG2055|consen 423 ---------------TNPKPIKTVDNLTTAITSLQFNHD-AQILAIASRVKKNALRLVHVPSCTVFSNFPTSN------- 479 (514)
T ss_pred ---------------CCCCchhhhhhhheeeeeeeeCcc-hhhhhhhhhccccceEEEeccceeeeccCCCCC-------
Confidence 112233333344568999999998 788887764 6789998887765544442211
Q ss_pred ccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECC
Q 005506 266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 309 (693)
Q Consensus 266 ~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~ 309 (693)
..-..|++++|||.|.+|++|..+|.|.||.+.
T Consensus 480 -----------~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 480 -----------TKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred -----------CcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 112259999999999999999999999999875
No 166
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.65 E-value=1.8e-15 Score=160.81 Aligned_cols=231 Identities=15% Similarity=0.205 Sum_probs=174.5
Q ss_pred hcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCC
Q 005506 37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD 116 (693)
Q Consensus 37 i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~D 116 (693)
...+.+..+|+||.+.|+|++|+.+|+++|||+.|..|.||+.. ....+...|.+.|.|+.|+|- .+.|+||+..
T Consensus 40 ~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k---lEG~LkYSH~D~IQCMsFNP~--~h~LasCsLs 114 (1081)
T KOG1538|consen 40 TSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK---LEGILKYSHNDAIQCMSFNPI--THQLASCSLS 114 (1081)
T ss_pred CCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccc---ccceeeeccCCeeeEeecCch--HHHhhhcchh
Confidence 56678899999999999999999999999999999999999964 334444689999999999999 4899999864
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceE
Q 005506 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (693)
Q Consensus 117 g~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~ 196 (693)
..-+|..... .+... ....+|.+.+|.. ++.+|+-|-.||+|.+-+-....
T Consensus 115 -dFglWS~~qK-----------~V~K~-kss~R~~~CsWtn-DGqylalG~~nGTIsiRNk~gEe--------------- 165 (1081)
T KOG1538|consen 115 -DFGLWSPEQK-----------SVSKH-KSSSRIICCSWTN-DGQYLALGMFNGTISIRNKNGEE--------------- 165 (1081)
T ss_pred -hccccChhhh-----------hHHhh-hhheeEEEeeecC-CCcEEEEeccCceEEeecCCCCc---------------
Confidence 5677877642 12222 2356788899987 78999999999999887432221
Q ss_pred EEeccCCceeeecCCCCCccceEEEEEcCCCC----cEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCcc
Q 005506 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRP----HLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL 272 (693)
Q Consensus 197 l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~----~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (693)
...+..+.+...+|.+++|+|..+ ..+++.....++.+|.+. ++.+.+-..-...|-|+++|..+..
T Consensus 166 --------k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy 236 (1081)
T KOG1538|consen 166 --------KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEY 236 (1081)
T ss_pred --------ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcE
Confidence 112334445567899999999643 578888888999988875 3333333333445678888765531
Q ss_pred --------------------ccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCC
Q 005506 273 --------------------SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 273 --------------------~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~ 310 (693)
..-+..+.+|+.|+..|++++++.|+.||+|-.|++-.
T Consensus 237 ~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 237 ILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred EEEccCCCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 11234456899999999999999999999999999754
No 167
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=4.3e-16 Score=155.06 Aligned_cols=108 Identities=19% Similarity=0.211 Sum_probs=94.0
Q ss_pred cchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCC
Q 005506 360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSS 439 (693)
Q Consensus 360 ~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~ 439 (693)
.+.++.+|+.||++|+..+ |..|+.+|+++|+..- .++.+.++||.|||||.+-++. |..||.||.+||.++|.
T Consensus 78 ~E~Aen~KeeGN~~fK~Kr-yk~A~~~Yt~Glk~kc--~D~dlnavLY~NRAAa~~~l~N---yRs~l~Dcs~al~~~P~ 151 (390)
T KOG0551|consen 78 HEQAENYKEEGNEYFKEKR-YKDAVESYTEGLKKKC--ADPDLNAVLYTNRAAAQLYLGN---YRSALNDCSAALKLKPT 151 (390)
T ss_pred HHHHHHHHHHhHHHHHhhh-HHHHHHHHHHHHhhcC--CCccHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHhcCcc
Confidence 3578999999999999999 9999999999998643 3467889999999999999765 99999999999999999
Q ss_pred CcchhhhHHHHHHHhccHHHHHHHHHHHcccCCC
Q 005506 440 SFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPS 473 (693)
Q Consensus 440 ~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~ 473 (693)
|.||++|-|+|+++|+++.+|..+.+..+..+-+
T Consensus 152 h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 152 HLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 9999999999999999977777666555544433
No 168
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.64 E-value=5e-15 Score=158.88 Aligned_cols=225 Identities=17% Similarity=0.191 Sum_probs=165.9
Q ss_pred eEEeccCCCcEEEEEECCCCCEEEEEeCCC-----cEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 005506 43 ERELEGHQGCVNAISWNSKGSLLISGSDDT-----HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (693)
Q Consensus 43 ~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg-----~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg 117 (693)
++.|.||.-.|.|++.+|+|+++||+.... .|+||+..+...+..+ .+|.-.|+.++|+|+ |++|++.+.|+
T Consensus 518 v~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L-~~HsLTVT~l~FSpd--g~~LLsvsRDR 594 (764)
T KOG1063|consen 518 VHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQEL-EGHSLTVTRLAFSPD--GRYLLSVSRDR 594 (764)
T ss_pred hHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhhee-cccceEEEEEEECCC--CcEEEEeecCc
Confidence 566789999999999999999999997543 4899999988888888 799999999999999 79999999999
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCC--CCCCCCCCCcccce
Q 005506 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS--SCPPAGSSHQECRN 195 (693)
Q Consensus 118 ~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~--~~~~~~~~~~~~~~ 195 (693)
++.+|......... ......+.|+.-|.+..|+| +.++|+|+|.|.+|++|...... ...
T Consensus 595 t~sl~~~~~~~~~e------~~fa~~k~HtRIIWdcsW~p-de~~FaTaSRDK~VkVW~~~~~~d~~i~----------- 656 (764)
T KOG1063|consen 595 TVSLYEVQEDIKDE------FRFACLKAHTRIIWDCSWSP-DEKYFATASRDKKVKVWEEPDLRDKYIS----------- 656 (764)
T ss_pred eEEeeeeecccchh------hhhccccccceEEEEcccCc-ccceeEEecCCceEEEEeccCchhhhhh-----------
Confidence 99999986432111 11233678999999999999 67889999999999999887652 110
Q ss_pred EEEeccCCceeeecCCCCCccceEEEEEcCCC----CcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCc
Q 005506 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTR----PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 271 (693)
Q Consensus 196 ~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~----~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (693)
-.........|+.+++.|.. ...+++|-..|.|.+|.........+.. ....+..
T Consensus 657 ------------~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~---------~~~~~~~ 715 (764)
T KOG1063|consen 657 ------------RFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVG---------TFNLDTR 715 (764)
T ss_pred ------------hhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccce---------eeeeccc
Confidence 00122345678888887743 3488999999999999865322111110 0000111
Q ss_pred cccCCCCccceEEEEEcCC----------CCEEEEEecCCcEEEEECC
Q 005506 272 LSEHGRSSLHLTHVTFSPN----------GEEVLLSYSGEHVYLMDVN 309 (693)
Q Consensus 272 ~~~~~~~~~~V~~v~fspd----------g~~L~sgs~Dg~V~lwdl~ 309 (693)
+.........|+.+.|.|. ...|++|+.|..++++++.
T Consensus 716 l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 716 LCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred cccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 1112222336999999975 2456899999999999875
No 169
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=3.6e-14 Score=152.27 Aligned_cols=234 Identities=13% Similarity=0.137 Sum_probs=171.9
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEE-EeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCC
Q 005506 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH-SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 126 (693)
Q Consensus 48 gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~-~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~ 126 (693)
--..+|.||+|+.+.+.||.+-.||.|-||++..+-+.. .+..+-...|-+++|++. ..|.+.+.+|+|.-||+.+
T Consensus 23 ~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~---~RLFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 23 YKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEG---GRLFSSGLSGSITEWDLHT 99 (691)
T ss_pred eeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccC---CeEEeecCCceEEEEeccc
Confidence 346789999999999999999999999999998765443 443344578999999965 5788888999999999997
Q ss_pred CCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCcee
Q 005506 127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206 (693)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 206 (693)
. ++...+....+.|.+++.+| ....++.|++||.+..++..... +.
T Consensus 100 l----------k~~~~~d~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~--------------I~--------- 145 (691)
T KOG2048|consen 100 L----------KQKYNIDSNGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDK--------------IT--------- 145 (691)
T ss_pred C----------ceeEEecCCCcceeEEEeCC-ccceEEeecCCceEEEEecCCce--------------EE---------
Confidence 5 56777788889999999999 66888899999976666655432 11
Q ss_pred eecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccC-CCCccceEEE
Q 005506 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH-GRSSLHLTHV 285 (693)
Q Consensus 207 ~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~V~~v 285 (693)
.-...+.++..|.+++|+|+ +..+++|+.||.|++||...+..+.-. .+.+..- .....-|++|
T Consensus 146 ~~r~l~rq~sRvLslsw~~~-~~~i~~Gs~Dg~Iriwd~~~~~t~~~~--------------~~~~d~l~k~~~~iVWSv 210 (691)
T KOG2048|consen 146 YKRSLMRQKSRVLSLSWNPT-GTKIAGGSIDGVIRIWDVKSGQTLHII--------------TMQLDRLSKREPTIVWSV 210 (691)
T ss_pred EEeecccccceEEEEEecCC-ccEEEecccCceEEEEEcCCCceEEEe--------------eecccccccCCceEEEEE
Confidence 11122344678999999998 678999999999999999876543310 0111111 1122348899
Q ss_pred EEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCC
Q 005506 286 TFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN 334 (693)
Q Consensus 286 ~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~ 334 (693)
.|-.++ .|++|..-|+|.+||...+......-.+...+..++..+..+
T Consensus 211 ~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d 258 (691)
T KOG2048|consen 211 LFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNED 258 (691)
T ss_pred EEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCC
Confidence 988776 488899999999999999765555444444444555554433
No 170
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.64 E-value=7.4e-15 Score=143.00 Aligned_cols=203 Identities=16% Similarity=0.303 Sum_probs=153.3
Q ss_pred cCCCcEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcE--EEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEc
Q 005506 48 GHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKL--LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124 (693)
Q Consensus 48 gH~~~V~~l~~s~-~g~~LaSgs~Dg~I~IWd~~~~~~--~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl 124 (693)
.|..++++..|+. +.+++.+.|-|.+..|||++++.. +++-...|..+|+.|+|...+ -++||+.+.||+||+||+
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s-~~~FASvgaDGSvRmFDL 226 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGS-RDVFASVGADGSVRMFDL 226 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCc-cceEEEecCCCcEEEEEe
Confidence 4678999999998 788999999999999999998733 333336999999999999864 589999999999999999
Q ss_pred CCCCCCCCCCCCCCCceeecc--CCCCeEEEEEecCCCcEEEEEeCCC-cEEEEeCCCCCCCCCCCCCCcccceEEEecc
Q 005506 125 SRFSGRGLDDNAITPSALYQC--HTRRVKKLAVEVGNPHVVWSASEDG-TLRQHDFRQGSSCPPAGSSHQECRNILLDLR 201 (693)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~--h~~~V~~la~sp~~~~~l~Sgs~Dg-~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~ 201 (693)
+.... ..-.+.. ...+...++|+++++++++|-..|. .|.+.|+|.+..
T Consensus 227 R~leH---------STIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t------------------- 278 (364)
T KOG0290|consen 227 RSLEH---------STIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT------------------- 278 (364)
T ss_pred ccccc---------ceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc-------------------
Confidence 96421 1112222 1457889999999999999988765 688999998652
Q ss_pred CCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccc
Q 005506 202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH 281 (693)
Q Consensus 202 ~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (693)
.+....+|...|+.++|.|..+..|++++.|..+-+||+...... ....+.+.+ .....
T Consensus 279 -----pva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~------~~~dPilay----------~a~~E 337 (364)
T KOG0290|consen 279 -----PVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRE------NGEDPILAY----------TAGGE 337 (364)
T ss_pred -----ceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccccccc------CCCCchhhh----------hccce
Confidence 245556788999999999999999999999999999999854210 000011111 01225
Q ss_pred eEEEEEcC-CCCEEEEEecC
Q 005506 282 LTHVTFSP-NGEEVLLSYSG 300 (693)
Q Consensus 282 V~~v~fsp-dg~~L~sgs~D 300 (693)
|+.+.|++ .+.+|+.+++.
T Consensus 338 VNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 338 VNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred eeeeeecccCCCEEEEEecC
Confidence 99999996 45677766543
No 171
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=8.4e-15 Score=150.64 Aligned_cols=231 Identities=15% Similarity=0.189 Sum_probs=168.1
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEECCC--CcEEEEeccCCCcceEEEEEeeCCCCC-EEEEEeCCCcEEEEEcCC
Q 005506 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSS--RKLLHSIETGHSANVFCTKFVPETSDE-LVVSGAGDAEVRLFNLSR 126 (693)
Q Consensus 50 ~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~--~~~~~~l~~~h~~~I~sv~f~p~~~~~-~l~sgs~Dg~V~vwdl~~ 126 (693)
.+.|+++.|+|.-.+|++++.|++++||.++. ...++.+ .--..+|.+.+|.|+ |. .+++++.-...+.||+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~-~l~~fPi~~a~f~p~--G~~~i~~s~rrky~ysyDle~ 289 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSI-HLEKFPIQKAEFAPN--GHSVIFTSGRRKYLYSYDLET 289 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheee-eeccCccceeeecCC--CceEEEecccceEEEEeeccc
Confidence 57899999999999999999999999998863 3355555 334679999999998 55 899999999999999986
Q ss_pred CCCCCCCCCCCCCceeeccCC-CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCce
Q 005506 127 FSGRGLDDNAITPSALYQCHT-RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (693)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~h~-~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (693)
..- .++....++. ..+....++| ++++|+..|..|.|.+....+++...
T Consensus 290 ak~--------~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~eli~--------------------- 339 (514)
T KOG2055|consen 290 AKV--------TKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTKELIT--------------------- 339 (514)
T ss_pred ccc--------ccccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhhhhhhh---------------------
Confidence 432 2333334443 4677889999 66799999999999999887765320
Q ss_pred eeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEE
Q 005506 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV 285 (693)
Q Consensus 206 ~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v 285 (693)
.-.-...|..++|+.+ ++.|++++.+|.|++||++... |+..|.. .....-+++
T Consensus 340 -----s~KieG~v~~~~fsSd-sk~l~~~~~~GeV~v~nl~~~~-------------~~~rf~D-------~G~v~gts~ 393 (514)
T KOG2055|consen 340 -----SFKIEGVVSDFTFSSD-SKELLASGGTGEVYVWNLRQNS-------------CLHRFVD-------DGSVHGTSL 393 (514)
T ss_pred -----eeeeccEEeeEEEecC-CcEEEEEcCCceEEEEecCCcc-------------eEEEEee-------cCccceeee
Confidence 0012456889999987 6888888899999999999763 3333311 111135789
Q ss_pred EEcCCCCEEEEEecCCcEEEEECCCCC---cceE---EeecCCCceeEEeccCCCccccc
Q 005506 286 TFSPNGEEVLLSYSGEHVYLMDVNHAG---GRAM---RYTVGDASKIMSFTPTLNGLELQ 339 (693)
Q Consensus 286 ~fspdg~~L~sgs~Dg~V~lwdl~~~~---~~~~---~~~~~~~~~~~~~~p~~~g~~~~ 339 (693)
+.|++|.||++|+..|.|.|||.++-. .+.. +......+..+.|+|+..-+++.
T Consensus 394 ~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAia 453 (514)
T KOG2055|consen 394 CISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIA 453 (514)
T ss_pred eecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhh
Confidence 999999999999999999999976621 1111 11122345567777776555443
No 172
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=5.5e-15 Score=147.04 Aligned_cols=249 Identities=16% Similarity=0.192 Sum_probs=171.7
Q ss_pred cccccchhhhcccceeEEeccCCCcEEEEEECC--CCCEEEEEeCCCcEEEEECCCCcEEEEec-cCCCc-ceEEEEEee
Q 005506 28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSRKLLHSIE-TGHSA-NVFCTKFVP 103 (693)
Q Consensus 28 ~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~--~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~-~~h~~-~I~sv~f~p 103 (693)
..+++++. .+++...++++|...++.+.|.. .+..+.||+.||+|++||+.+......+. ..|.+ +-.|++-.-
T Consensus 50 gsv~lyd~--~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nc 127 (376)
T KOG1188|consen 50 GSVRLYDK--GTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNC 127 (376)
T ss_pred CeEEEEec--cchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccC
Confidence 44555553 33778889999999999999988 57899999999999999998776554442 34543 334444432
Q ss_pred CCCCCEEEEEeC----CCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 005506 104 ETSDELVVSGAG----DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (693)
Q Consensus 104 ~~~~~~l~sgs~----Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~ 179 (693)
. ++++++|.. +-.|.+||++.... ..-.....|...|++|.|+|.++++|+|||.||.|.+||+..
T Consensus 128 k--~~ii~~GtE~~~s~A~v~lwDvR~~qq--------~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~ 197 (376)
T KOG1188|consen 128 K--KNIIACGTELTRSDASVVLWDVRSEQQ--------LLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKK 197 (376)
T ss_pred c--CCeEEeccccccCceEEEEEEeccccc--------hhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCC
Confidence 3 678887753 67799999996531 123345679999999999999999999999999999999976
Q ss_pred CCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCC
Q 005506 180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS 259 (693)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~ 259 (693)
... .+ .+...-.+...|.++.|...+-+.|.+-+......+|++..+.....+..+-.
T Consensus 198 d~E--------eD--------------aL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~ 255 (376)
T KOG1188|consen 198 DNE--------ED--------------ALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDV 255 (376)
T ss_pred Ccc--------hh--------------hHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccc
Confidence 521 11 11111134557899999987656788889999999999988775443322200
Q ss_pred C------CCcccccccCc-----------------------------------cccCCCCccceEEEEEcCCCCEEEEEe
Q 005506 260 P------PPCVNYFCPMH-----------------------------------LSEHGRSSLHLTHVTFSPNGEEVLLSY 298 (693)
Q Consensus 260 ~------~~~~~~~~~~~-----------------------------------~~~~~~~~~~V~~v~fspdg~~L~sgs 298 (693)
. .....++...| ...+++....|.++.|...+..+++|+
T Consensus 256 ~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGG 335 (376)
T KOG1188|consen 256 SADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGG 335 (376)
T ss_pred hhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccC
Confidence 0 00000000000 001232233577888888899999999
Q ss_pred cCCcEEEEECCC
Q 005506 299 SGEHVYLMDVNH 310 (693)
Q Consensus 299 ~Dg~V~lwdl~~ 310 (693)
.||.+.+|....
T Consensus 336 EDG~l~~Wk~~d 347 (376)
T KOG1188|consen 336 EDGLLQAWKVED 347 (376)
T ss_pred CCceEEEEecCC
Confidence 999999998644
No 173
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.63 E-value=6.4e-15 Score=143.30 Aligned_cols=216 Identities=19% Similarity=0.254 Sum_probs=156.0
Q ss_pred eEEeccCCCcEEEEEECC-CCCEEEEEeCC-------CcEEEEECCCC---------cEEEEeccCCCcceEEEEEeeCC
Q 005506 43 ERELEGHQGCVNAISWNS-KGSLLISGSDD-------THINVWSYSSR---------KLLHSIETGHSANVFCTKFVPET 105 (693)
Q Consensus 43 ~~~l~gH~~~V~~l~~s~-~g~~LaSgs~D-------g~I~IWd~~~~---------~~~~~l~~~h~~~I~sv~f~p~~ 105 (693)
-+.|..|.+.|..|+-+| +..+|+|+-.+ ..+.||.+... +++..+.+.+-+.|.||.|.|+
T Consensus 56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn- 134 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN- 134 (370)
T ss_pred hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC-
Confidence 346778899999999999 56677777542 23779988642 3455665567789999999998
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEec-CCCcEEEEEeCCCcEEEEeCCCCCCCC
Q 005506 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV-GNPHVVWSASEDGTLRQHDFRQGSSCP 184 (693)
Q Consensus 106 ~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp-~~~~~l~Sgs~Dg~V~lwDlr~~~~~~ 184 (693)
+..+++-. |..|.+|++...+..... -+...-..|....++-+|+| .+++.+++ ..|+++..||+|+.+..-
T Consensus 135 -s~klasm~-dn~i~l~~l~ess~~vae----v~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~~~ 207 (370)
T KOG1007|consen 135 -SDKLASMD-DNNIVLWSLDESSKIVAE----VLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKKNN 207 (370)
T ss_pred -CCeeEEec-cCceEEEEcccCcchhee----ecccccccccceecccccCCCCccceEEE-eCCCcEEEEEccchhhhc
Confidence 46776655 899999999975432110 01111123667788889999 56677755 467999999999865321
Q ss_pred CCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcc
Q 005506 185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV 264 (693)
Q Consensus 185 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~ 264 (693)
.....|...|..+.|+|....+|++|+.||.|||||.|+.+. .+
T Consensus 208 ------------------------sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~------------pv 251 (370)
T KOG1007|consen 208 ------------------------SIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF------------PV 251 (370)
T ss_pred ------------------------chhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc------------cc
Confidence 111235557899999999889999999999999999997541 12
Q ss_pred cccccCccccCCCCccceEEEEEcCCC-CEEEEEecCCcEEEEECCC
Q 005506 265 NYFCPMHLSEHGRSSLHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 265 ~~~~~~~~~~~~~~~~~V~~v~fspdg-~~L~sgs~Dg~V~lwdl~~ 310 (693)
+.. .+|.. +|++|.|+|.- +.|++|+.|..|.||...+
T Consensus 252 ~el-------~~HsH-WvW~VRfn~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 252 QEL-------PGHSH-WVWAVRFNPEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred ccc-------CCCce-EEEEEEecCccceEEEecCCCceeEEEeccc
Confidence 221 34544 89999999965 5677888899999998876
No 174
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=7.1e-14 Score=150.03 Aligned_cols=250 Identities=14% Similarity=0.211 Sum_probs=182.6
Q ss_pred cccccchhhhcccceeEEeccCC-CcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCC
Q 005506 28 HSLQMHSSLVRRLSQERELEGHQ-GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS 106 (693)
Q Consensus 28 ~~l~~~~~~i~~l~~~~~l~gH~-~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~ 106 (693)
..+-+|-. ....-++.++.||. ..|-+|+|++ |..|.|.+.+|.|.-||+.+.+.+..+ ....+.|++++.+|.
T Consensus 47 g~IEiwN~-~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~-d~~gg~IWsiai~p~-- 121 (691)
T KOG2048|consen 47 GNIEIWNL-SNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNI-DSNGGAIWSIAINPE-- 121 (691)
T ss_pred CcEEEEcc-CCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEe-cCCCcceeEEEeCCc--
Confidence 44445532 23455677788875 5799999995 556788889999999999999999988 678899999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCC
Q 005506 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA 186 (693)
Q Consensus 107 ~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~ 186 (693)
+..++.|+.||.+..+++.... +.....+...+++|.+++|+| .+..+++|+.||.|++||...++..
T Consensus 122 ~~~l~IgcddGvl~~~s~~p~~--------I~~~r~l~rq~sRvLslsw~~-~~~~i~~Gs~Dg~Iriwd~~~~~t~--- 189 (691)
T KOG2048|consen 122 NTILAIGCDDGVLYDFSIGPDK--------ITYKRSLMRQKSRVLSLSWNP-TGTKIAGGSIDGVIRIWDVKSGQTL--- 189 (691)
T ss_pred cceEEeecCCceEEEEecCCce--------EEEEeecccccceEEEEEecC-CccEEEecccCceEEEEEcCCCceE---
Confidence 5899999999977777766421 122334445678999999999 6677889999999999999887643
Q ss_pred CCCCcccceEEEeccCCceeeecCCCC-CccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCccc
Q 005506 187 GSSHQECRNILLDLRCGAKRSLADPPK-QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN 265 (693)
Q Consensus 187 ~~~~~~~~~~l~~~~~~~~~~l~~~~~-~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~ 265 (693)
.+.+.... .... ...-|.++.|-.+ ..|++|.+-|+|.+||...+..+.++
T Consensus 190 ---------~~~~~~~d------~l~k~~~~iVWSv~~Lrd--~tI~sgDS~G~V~FWd~~~gTLiqS~----------- 241 (691)
T KOG2048|consen 190 ---------HIITMQLD------RLSKREPTIVWSVLFLRD--STIASGDSAGTVTFWDSIFGTLIQSH----------- 241 (691)
T ss_pred ---------EEeeeccc------ccccCCceEEEEEEEeec--CcEEEecCCceEEEEcccCcchhhhh-----------
Confidence 11111111 1111 3456778887754 58999999999999999987655443
Q ss_pred ccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcc----eEEeecCCCceeEEeccC
Q 005506 266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR----AMRYTVGDASKIMSFTPT 332 (693)
Q Consensus 266 ~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~----~~~~~~~~~~~~~~~~p~ 332 (693)
.-|.. .|.+++..+++.+|++++.|+.|..|...+.... .....+.+-++.++..+.
T Consensus 242 ---------~~h~a-dVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~ 302 (691)
T KOG2048|consen 242 ---------SCHDA-DVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN 302 (691)
T ss_pred ---------hhhhc-ceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc
Confidence 11222 5999999999999999999999999998875432 122344555566665543
No 175
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.62 E-value=3.5e-15 Score=147.58 Aligned_cols=257 Identities=16% Similarity=0.190 Sum_probs=169.7
Q ss_pred cCCCcEEEEEECCC----CCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 005506 48 GHQGCVNAISWNSK----GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 123 (693)
Q Consensus 48 gH~~~V~~l~~s~~----g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwd 123 (693)
.|......++|+-+ .-+||.|+.-|.|+|.|+.++++...+ .+|...|..++|+|.. .+++++|+.|.+||+|+
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~-~ghG~sINeik~~p~~-~qlvls~SkD~svRlwn 164 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNY-RGHGGSINEIKFHPDR-PQLVLSASKDHSVRLWN 164 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccce-eccCccchhhhcCCCC-CcEEEEecCCceEEEEe
Confidence 37777888888764 348999999999999999999999988 7999999999999995 68999999999999999
Q ss_pred cCCCCCCCCCCCCCCCcee---eccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEec
Q 005506 124 LSRFSGRGLDDNAITPSAL---YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (693)
Q Consensus 124 l~~~~~~~~~~~~~~~~~~---~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~ 200 (693)
+++. .++.. ..+|...|.++.|++ ++..|+|+|.|-+|++|++...+.... .++......-
T Consensus 165 I~~~----------~Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~-----lE~s~~~~~~ 228 (385)
T KOG1034|consen 165 IQTD----------VCVAVFGGVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNK-----LELSITYSPN 228 (385)
T ss_pred ccCC----------eEEEEecccccccCcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhh-----hhhhcccCCC
Confidence 9964 33444 457999999999999 567999999999999999985432100 0000000000
Q ss_pred cCC--------ceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCC-CCCcccccCCCCCCcccccccCc
Q 005506 201 RCG--------AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPPPCVNYFCPMH 271 (693)
Q Consensus 201 ~~~--------~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~-~~~~~~~~~~~~~~~~~~~~~~~ 271 (693)
.+. ..+.......|...|-|+.|-- +++++=+-++.|..|-.-.. +.+... ..|..+...+....
T Consensus 229 ~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g---d~ilSkscenaI~~w~pgkl~e~~~~v---kp~es~~Ti~~~~~ 302 (385)
T KOG1034|consen 229 KTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG---DFILSKSCENAIVCWKPGKLEESIHNV---KPPESATTILGEFD 302 (385)
T ss_pred CccCcCCccccccccccccccccchHHHHHHHh---hheeecccCceEEEEecchhhhhhhcc---CCCccceeeeeEec
Confidence 000 0001112234555666666663 58888888999999987322 211111 11111221111111
Q ss_pred cccCCCCccceEE--EEEcCCCCEEEEEecCCcEEEEECCCCCcceE-Ee---ecCCCceeEEeccCC
Q 005506 272 LSEHGRSSLHLTH--VTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM-RY---TVGDASKIMSFTPTL 333 (693)
Q Consensus 272 ~~~~~~~~~~V~~--v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~-~~---~~~~~~~~~~~~p~~ 333 (693)
. ....|+- .+|+|-++.|+.|...|.|++||+.+...+.. .. ..+..++..+|+-+.
T Consensus 303 ~-----~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dg 365 (385)
T KOG1034|consen 303 Y-----PMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDG 365 (385)
T ss_pred c-----CccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccC
Confidence 1 1112444 45667889999999999999999998543211 11 113345556665543
No 176
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.62 E-value=8.2e-16 Score=161.21 Aligned_cols=128 Identities=19% Similarity=0.167 Sum_probs=120.0
Q ss_pred hhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCc
Q 005506 362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSF 441 (693)
Q Consensus 362 ~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~ 441 (693)
.+++++.++|..|+... |..||.+|++||++.|+. +++|.|||++|+|. +++..|+.||.+||+++|.+.
T Consensus 3 ~a~e~k~ean~~l~~~~-fd~avdlysKaI~ldpnc------a~~~anRa~a~lK~---e~~~~Al~Da~kaie~dP~~~ 72 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKV-FDVAVDLYSKAIELDPNC------AIYFANRALAHLKV---ESFGGALHDALKAIELDPTYI 72 (476)
T ss_pred hhhhhhhHHhhhcccch-HHHHHHHHHHHHhcCCcc------eeeechhhhhheee---chhhhHHHHHHhhhhcCchhh
Confidence 46789999999999999 999999999999999988 89999999999995 569999999999999999999
Q ss_pred chhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHHHHHHHHHHHHhhcccC
Q 005506 442 RAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKA 499 (693)
Q Consensus 442 KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l~~~i~~~~~~~~~~~ 499 (693)
|||+|||.|.++|+++.+|+.+|+....+.|++..+.+.+..++..+.+.++++..-.
T Consensus 73 K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~~ 130 (476)
T KOG0376|consen 73 KAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAILT 130 (476)
T ss_pred heeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcccC
Confidence 9999999999999999999999999999999999999999999999998877665443
No 177
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=4.3e-14 Score=156.28 Aligned_cols=207 Identities=13% Similarity=0.133 Sum_probs=151.4
Q ss_pred eeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 005506 42 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 121 (693)
Q Consensus 42 ~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~v 121 (693)
....|.-.+-++++++|+.+|+++|.||+|-.|++-++.+......+ .+|.++|.+|.|+|. +.+||+.+.||.|+|
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~l-rgh~apVl~l~~~p~--~~fLAvss~dG~v~i 164 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVL-RGHDAPVLQLSYDPK--GNFLAVSSCDGKVQI 164 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheee-cccCCceeeeeEcCC--CCEEEEEecCceEEE
Confidence 33344455678999999999999999999999999999998888888 799999999999999 799999999999999
Q ss_pred EEcCCCCCCCCCCCCCCCceeecc-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEec
Q 005506 122 FNLSRFSGRGLDDNAITPSALYQC-HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (693)
Q Consensus 122 wdl~~~~~~~~~~~~~~~~~~~~~-h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~ 200 (693)
|++........-. ........ ....+..++|+|+++. |+..+.|+.|++|+....... +.+
T Consensus 165 w~~~~~~~~~tl~---~v~k~n~~~~s~i~~~~aW~Pk~g~-la~~~~d~~Vkvy~r~~we~~--------------f~L 226 (933)
T KOG1274|consen 165 WDLQDGILSKTLT---GVDKDNEFILSRICTRLAWHPKGGT-LAVPPVDNTVKVYSRKGWELQ--------------FKL 226 (933)
T ss_pred EEcccchhhhhcc---cCCccccccccceeeeeeecCCCCe-EEeeccCCeEEEEccCCceeh--------------eee
Confidence 9999642111000 00001111 1456788999996655 556778899999998776522 222
Q ss_pred cCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCcc
Q 005506 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 280 (693)
Q Consensus 201 ~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (693)
+.. .+...+..++|+|. |.|||+++.||.|-|||..+... + ....
T Consensus 227 r~~---------~~ss~~~~~~wsPn-G~YiAAs~~~g~I~vWnv~t~~~-~------------------------~~~~ 271 (933)
T KOG1274|consen 227 RDK---------LSSSKFSDLQWSPN-GKYIAASTLDGQILVWNVDTHER-H------------------------EFKR 271 (933)
T ss_pred ccc---------ccccceEEEEEcCC-CcEEeeeccCCcEEEEecccchh-c------------------------cccc
Confidence 211 12233889999997 89999999999999999986321 0 1122
Q ss_pred ceEEEEEcCCCCEEEEEecCCcEE
Q 005506 281 HLTHVTFSPNGEEVLLSYSGEHVY 304 (693)
Q Consensus 281 ~V~~v~fspdg~~L~sgs~Dg~V~ 304 (693)
.|++++|.|++.-|-.-...|...
T Consensus 272 ~Vc~~aw~p~~n~it~~~~~g~~~ 295 (933)
T KOG1274|consen 272 AVCCEAWKPNANAITLITALGTLG 295 (933)
T ss_pred eeEEEecCCCCCeeEEEeeccccc
Confidence 599999999987665444444333
No 178
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.61 E-value=2e-13 Score=142.49 Aligned_cols=242 Identities=9% Similarity=0.085 Sum_probs=152.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEE-EEEeCCCcEEEEEcCCCCCCCCCCCCCCCc
Q 005506 62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPS 140 (693)
Q Consensus 62 g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l-~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~ 140 (693)
+.+++|++.|+.|.+||+.+++.+..+ ..+. .+.+++|+|+ +..+ ++++.++.|++||+... +..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~-~~~~-~~~~l~~~~d--g~~l~~~~~~~~~v~~~d~~~~----------~~~ 66 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTF-PVGQ-RPRGITLSKD--GKLLYVCASDSDTIQVIDLATG----------EVI 66 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEE-ECCC-CCCceEECCC--CCEEEEEECCCCeEEEEECCCC----------cEE
Confidence 357899999999999999999988887 3443 4678999998 4654 67778999999999854 223
Q ss_pred eeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCC--------Ccccc-----------eEEEecc
Q 005506 141 ALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS--------HQECR-----------NILLDLR 201 (693)
Q Consensus 141 ~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~--------~~~~~-----------~~l~~~~ 201 (693)
..+..+. .+..++|+|++..++++++.|+.|++||+++.......... ..+.. ...++..
T Consensus 67 ~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~ 145 (300)
T TIGR03866 67 GTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTK 145 (300)
T ss_pred EeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCC
Confidence 3344333 35678999965555566677899999999875432111100 00111 1122332
Q ss_pred CCceeeecCCCCCccceEEEEEcCCCCcEE-EEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCcc
Q 005506 202 CGAKRSLADPPKQTLSLKSCDISSTRPHLL-LVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 280 (693)
Q Consensus 202 ~~~~~~l~~~~~~~~~v~sl~~sp~~~~~L-atgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (693)
++....... ......+++|+|+ +.+| +++..++.|++||+.+.+.+..+..... . .. ....
T Consensus 146 ~~~~~~~~~---~~~~~~~~~~s~d-g~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~----------~-~~---~~~~ 207 (300)
T TIGR03866 146 TYEIVDNVL---VDQRPRFAEFTAD-GKELWVSSEIGGTVSVIDVATRKVIKKITFEIP----------G-VH---PEAV 207 (300)
T ss_pred CCeEEEEEE---cCCCccEEEECCC-CCEEEEEcCCCCEEEEEEcCcceeeeeeeeccc----------c-cc---cccC
Confidence 222111000 1123467899998 4555 4555699999999998754332211000 0 00 0011
Q ss_pred ceEEEEEcCCCCEEEEE-ecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCccc
Q 005506 281 HLTHVTFSPNGEEVLLS-YSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLE 337 (693)
Q Consensus 281 ~V~~v~fspdg~~L~sg-s~Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~ 337 (693)
....++|+|+|++++++ +.++.|.+||+.+++... ....++.+..++|+|+...+.
T Consensus 208 ~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~g~~l~ 264 (300)
T TIGR03866 208 QPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLD-YLLVGQRVWQLAFTPDEKYLL 264 (300)
T ss_pred CccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEE-EEEeCCCcceEEECCCCCEEE
Confidence 24568999999987665 457789999998865432 334456777888998876654
No 179
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.61 E-value=6.7e-14 Score=154.46 Aligned_cols=226 Identities=18% Similarity=0.181 Sum_probs=164.1
Q ss_pred cceeEEeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcE-----EEEeccCCCcceEEEEEeeCCCCCEEEEE
Q 005506 40 LSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKL-----LHSIETGHSANVFCTKFVPETSDELVVSG 113 (693)
Q Consensus 40 l~~~~~l~gH~~~V~~l~~s~-~g~~LaSgs~Dg~I~IWd~~~~~~-----~~~l~~~h~~~I~sv~f~p~~~~~~l~sg 113 (693)
..+...+. -...|.|++|+| +..+||.|..+|.|.+||+..+.. +......|..+|+.+.|..+..+.-|+++
T Consensus 233 ~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ 311 (555)
T KOG1587|consen 233 NTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSL 311 (555)
T ss_pred CCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEE
Confidence 56666666 356799999999 678999999999999999987654 23334579999999999987544569999
Q ss_pred eCCCcEEEEEcCCCCCCCC-----------------------------------------------CC------CCCCCc
Q 005506 114 AGDAEVRLFNLSRFSGRGL-----------------------------------------------DD------NAITPS 140 (693)
Q Consensus 114 s~Dg~V~vwdl~~~~~~~~-----------------------------------------------~~------~~~~~~ 140 (693)
+.||.|..|+++....... .. ...+..
T Consensus 312 ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~ 391 (555)
T KOG1587|consen 312 SSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGH 391 (555)
T ss_pred ecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccc
Confidence 9999999999874321100 00 001223
Q ss_pred eeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEE
Q 005506 141 ALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS 220 (693)
Q Consensus 141 ~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~s 220 (693)
..+..|.+.|+.+.++|-...+|.|++ |.+|++|....... ++.....+...+++
T Consensus 392 ~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~------------------------Pl~~~~~~~~~v~~ 446 (555)
T KOG1587|consen 392 STFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIAS------------------------PLLSLDSSPDYVTD 446 (555)
T ss_pred ccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCC------------------------cchhhhhccceeee
Confidence 345567788889998887777777777 88999998653221 11222233445999
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecC
Q 005506 221 CDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG 300 (693)
Q Consensus 221 l~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~D 300 (693)
++|||.++..|+++..||.|.+||+...... ++... .-+ ....+.+.|+++|+.|++|...
T Consensus 447 vaWSptrpavF~~~d~~G~l~iWDLl~~~~~----------Pv~s~--------~~~-~~~l~~~~~s~~g~~lavGd~~ 507 (555)
T KOG1587|consen 447 VAWSPTRPAVFATVDGDGNLDIWDLLQDDEE----------PVLSQ--------KVC-SPALTRVRWSPNGKLLAVGDAN 507 (555)
T ss_pred eEEcCcCceEEEEEcCCCceehhhhhccccC----------Ccccc--------ccc-ccccceeecCCCCcEEEEecCC
Confidence 9999999999999999999999999854321 11100 001 2246788999999999999999
Q ss_pred CcEEEEECCC
Q 005506 301 EHVYLMDVNH 310 (693)
Q Consensus 301 g~V~lwdl~~ 310 (693)
|.|++|++..
T Consensus 508 G~~~~~~l~~ 517 (555)
T KOG1587|consen 508 GTTHILKLSE 517 (555)
T ss_pred CcEEEEEcCc
Confidence 9999999986
No 180
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.61 E-value=4.3e-14 Score=139.59 Aligned_cols=239 Identities=17% Similarity=0.177 Sum_probs=167.6
Q ss_pred CCcEEEEEEC-------CCCCEEEEEeCCCcEEEEECCCCcEEEEec-cCCCc---ceEEEEEeeCCCCCEEEEEeCCCc
Q 005506 50 QGCVNAISWN-------SKGSLLISGSDDTHINVWSYSSRKLLHSIE-TGHSA---NVFCTKFVPETSDELVVSGAGDAE 118 (693)
Q Consensus 50 ~~~V~~l~~s-------~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~-~~h~~---~I~sv~f~p~~~~~~l~sgs~Dg~ 118 (693)
.+.|...+|- |+..++|+.+.|.-|++||..+|+....+. ..|.. ...+++|+|+ |..|++| ....
T Consensus 104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~D--GeqlfaG-ykrc 180 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPD--GEQLFAG-YKRC 180 (406)
T ss_pred CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCC--CCeEeec-ccce
Confidence 3568888886 567899999999999999999998877652 12433 3468999999 6788776 5689
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEE
Q 005506 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (693)
Q Consensus 119 V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~ 198 (693)
|+|||+..+ ++....... ..+...+..+-+.+++|+|.++.+++.|+.-..+-||.-....++
T Consensus 181 irvFdt~Rp-Gr~c~vy~t-~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl--------------- 243 (406)
T KOG2919|consen 181 IRVFDTSRP-GRDCPVYTT-VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPL--------------- 243 (406)
T ss_pred EEEeeccCC-CCCCcchhh-hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCce---------------
Confidence 999999653 222111110 011122346788999999999999999999888877765554422
Q ss_pred eccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEe-CCCcEEEEecCCCCC-CcccccCCCCCCcccccccCccccCC
Q 005506 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRRMLPP-LTSCQKRMSPPPCVNYFCPMHLSEHG 276 (693)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs-~Dg~IriwD~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (693)
....+|...|+.+.|+++ ++.|.+|+ .|..|-.||+|.... +-.+. .|. +
T Consensus 244 ----------~llggh~gGvThL~~~ed-Gn~lfsGaRk~dkIl~WDiR~~~~pv~~L~--------------rhv---~ 295 (406)
T KOG2919|consen 244 ----------QLLGGHGGGVTHLQWCED-GNKLFSGARKDDKILCWDIRYSRDPVYALE--------------RHV---G 295 (406)
T ss_pred ----------eeecccCCCeeeEEeccC-cCeecccccCCCeEEEEeehhccchhhhhh--------------hhc---c
Confidence 222367789999999998 56777766 488999999996431 11110 011 1
Q ss_pred CCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCC-cceEEeecCCCceeEEeccCCCccc
Q 005506 277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG-GRAMRYTVGDASKIMSFTPTLNGLE 337 (693)
Q Consensus 277 ~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~-~~~~~~~~~~~~~~~~~~p~~~g~~ 337 (693)
..+ .-.-....|+|++|++|+.||.|++||+.... .+.+.....+..+.++++|...-++
T Consensus 296 ~TN-QRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpila 356 (406)
T KOG2919|consen 296 DTN-QRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILA 356 (406)
T ss_pred Ccc-ceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceee
Confidence 112 12235556999999999999999999999944 3566666677888899999765543
No 181
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.60 E-value=5.7e-15 Score=153.94 Aligned_cols=194 Identities=16% Similarity=0.308 Sum_probs=149.0
Q ss_pred cccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 005506 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (693)
Q Consensus 38 ~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg 117 (693)
+..+++.....|.++|.|-.|+|+|.-|+|++.||.|+||.- +|....++ .....+|.|++|.|++ .+.+++.+ +
T Consensus 92 k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl-~Q~~~~v~c~~W~p~S-~~vl~c~g--~ 166 (737)
T KOG1524|consen 92 KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTV-VQNEESIRCARWAPNS-NSIVFCQG--G 166 (737)
T ss_pred ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHH-hhcCceeEEEEECCCC-CceEEecC--C
Confidence 456667778899999999999999999999999999999995 45444444 4567789999999997 55666554 4
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEE
Q 005506 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (693)
Q Consensus 118 ~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l 197 (693)
.+.|=.+... ..+-.+++|.+-|.++.|+| ..++++||++|-..++||-...
T Consensus 167 h~~IKpL~~n----------~k~i~WkAHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~G~----------------- 218 (737)
T KOG1524|consen 167 HISIKPLAAN----------SKIIRWRAHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQGA----------------- 218 (737)
T ss_pred eEEEeecccc----------cceeEEeccCcEEEEeecCc-cccceeecCCceeEEeecccCc-----------------
Confidence 5555555533 33567889999999999999 5689999999999999996432
Q ss_pred EeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCC
Q 005506 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 277 (693)
Q Consensus 198 ~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (693)
.++....|..+|++++|+|+ ..+++++. .+.|+=..+
T Consensus 219 ---------~Lf~S~~~ey~ITSva~npd--~~~~v~S~-nt~R~~~p~------------------------------- 255 (737)
T KOG1524|consen 219 ---------NLFTSAAEEYAITSVAFNPE--KDYLLWSY-NTARFSSPR------------------------------- 255 (737)
T ss_pred ---------ccccCChhccceeeeeeccc--cceeeeee-eeeeecCCC-------------------------------
Confidence 23344467789999999997 57777765 344422111
Q ss_pred CccceEEEEEcCCCCEEEEEecCCcEEEEEC
Q 005506 278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV 308 (693)
Q Consensus 278 ~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl 308 (693)
...|..++||+||..++.|.+.|.|.+--+
T Consensus 256 -~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ 285 (737)
T KOG1524|consen 256 -VGSIFNLSWSADGTQATCGTSTGQLIVAYA 285 (737)
T ss_pred -ccceEEEEEcCCCceeeccccCceEEEeee
Confidence 125999999999999999999998765443
No 182
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=3.4e-15 Score=157.70 Aligned_cols=113 Identities=19% Similarity=0.134 Sum_probs=105.9
Q ss_pred hhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcc
Q 005506 363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR 442 (693)
Q Consensus 363 a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~K 442 (693)
+.+++++||.+|..|+ |..||.+|++||.+.|.+ +++|+||.+||.+++. |.+|+.|+.++++|+|.++|
T Consensus 2 a~e~k~kgnaa~s~~d-~~~ai~~~t~ai~l~p~n------hvlySnrsaa~a~~~~---~~~al~da~k~~~l~p~w~k 71 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGD-FETAIRLFTEAIMLSPTN------HVLYSNRSAAYASLGS---YEKALKDATKTRRLNPDWAK 71 (539)
T ss_pred hhHHHHHHHhhccccc-HHHHHHHHHHHHccCCCc------cchhcchHHHHHHHhh---HHHHHHHHHHHHhcCCchhh
Confidence 5678999999999999 999999999999999888 9999999999999654 99999999999999999999
Q ss_pred hhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHHHH
Q 005506 443 AHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIK 485 (693)
Q Consensus 443 A~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l~ 485 (693)
+|+|+|-|++.||+|++|+..|...++.+|+|+.....+....
T Consensus 72 gy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 72 GYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 9999999999999999999999999999999988776666555
No 183
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.59 E-value=2.2e-14 Score=138.02 Aligned_cols=243 Identities=16% Similarity=0.211 Sum_probs=162.4
Q ss_pred ceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 005506 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (693)
Q Consensus 41 ~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~ 120 (693)
.+...|++|.+.|+|+.|-.++. |.+|..-|.|++|++.+...+..+...|...|+.+.-.|+ ..+.+-+.|+.+.
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~---d~l~tqgRd~~L~ 80 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN---DSLDTQGRDPLLI 80 (323)
T ss_pred CCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC---cchhhcCCCceEE
Confidence 45678899999999999988775 8899999999999999998888775467889999999886 5788889999999
Q ss_pred EEEcCCCCCCCC------------------CCCC-----------CC--------Ccee------eccCCCCeEEEEEec
Q 005506 121 LFNLSRFSGRGL------------------DDNA-----------IT--------PSAL------YQCHTRRVKKLAVEV 157 (693)
Q Consensus 121 vwdl~~~~~~~~------------------~~~~-----------~~--------~~~~------~~~h~~~V~~la~sp 157 (693)
+|++........ ..+. .+ +..+ -.+..+.|.+..+..
T Consensus 81 lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~ 160 (323)
T KOG0322|consen 81 LWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDH 160 (323)
T ss_pred EEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccc
Confidence 999875211000 0000 00 0000 001234566666543
Q ss_pred CCC--cEEEEEeCCCcEEEEeCCCCCCCC----------CCCCCCcccce-------------------EEEeccC--Cc
Q 005506 158 GNP--HVVWSASEDGTLRQHDFRQGSSCP----------PAGSSHQECRN-------------------ILLDLRC--GA 204 (693)
Q Consensus 158 ~~~--~~l~Sgs~Dg~V~lwDlr~~~~~~----------~~~~~~~~~~~-------------------~l~~~~~--~~ 204 (693)
..+ -++++|-++|.|.+||+.++.... ......+.... +.+.+.. +.
T Consensus 161 ~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gs 240 (323)
T KOG0322|consen 161 ACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGS 240 (323)
T ss_pred cccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCc
Confidence 333 356678889999999999863221 00011111111 1111111 11
Q ss_pred eeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEE
Q 005506 205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH 284 (693)
Q Consensus 205 ~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 284 (693)
...-....-....+..+.+-|+ ++.+||++.|+.||+|.-+++.++..+ .-|.. .|++
T Consensus 241 lq~~~e~~lknpGv~gvrIRpD-~KIlATAGWD~RiRVyswrtl~pLAVL--------------------kyHsa-gvn~ 298 (323)
T KOG0322|consen 241 LQIRKEITLKNPGVSGVRIRPD-GKILATAGWDHRIRVYSWRTLNPLAVL--------------------KYHSA-GVNA 298 (323)
T ss_pred ccccceEEecCCCccceEEccC-CcEEeecccCCcEEEEEeccCCchhhh--------------------hhhhc-ceeE
Confidence 1000011112235677888897 689999999999999999998776433 12443 6999
Q ss_pred EEEcCCCCEEEEEecCCcEEEEECC
Q 005506 285 VTFSPNGEEVLLSYSGEHVYLMDVN 309 (693)
Q Consensus 285 v~fspdg~~L~sgs~Dg~V~lwdl~ 309 (693)
++|+|+...+++++.|+.|-+|++.
T Consensus 299 vAfspd~~lmAaaskD~rISLWkLY 323 (323)
T KOG0322|consen 299 VAFSPDCELMAAASKDARISLWKLY 323 (323)
T ss_pred EEeCCCCchhhhccCCceEEeeecC
Confidence 9999999999999999999999973
No 184
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.59 E-value=1.4e-13 Score=136.04 Aligned_cols=227 Identities=15% Similarity=0.191 Sum_probs=169.3
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCc---EEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcC
Q 005506 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (693)
Q Consensus 49 H~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~---~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~ 125 (693)
-..+|+|.+|+++++.+|.+-....|.||...... ..+++ ..|...|++|.|.|. .+.|++|+.|..-+||...
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htl-s~Hd~~vtgvdWap~--snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTL-SEHDKIVTGVDWAPK--SNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceeh-hhhCcceeEEeecCC--CCceeEccCCCCccccccC
Confidence 35799999999999999999999999999987554 56677 789999999999999 4799999999999999985
Q ss_pred CCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCce
Q 005506 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (693)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (693)
.+ ..+++...+..|...++++.|+| ..+.|++|+.-..|.+|-+..... -|...
T Consensus 86 ~~-------~~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENd--------------WWVsK---- 139 (361)
T KOG1523|consen 86 SG-------GTWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQEND--------------WWVSK---- 139 (361)
T ss_pred CC-------CeeccceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecccc--------------eehhh----
Confidence 32 23577778888999999999999 789999999999999998866431 11000
Q ss_pred eeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCcc-ccCCCCccceEE
Q 005506 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL-SEHGRSSLHLTH 284 (693)
Q Consensus 206 ~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~V~~ 284 (693)
.........|.+++|+|. +-+|++|+.|+..|+|..--. .+ ..+..|.+--..+.-+.+ .+-...+.+|..
T Consensus 140 ---hikkPirStv~sldWhpn-nVLlaaGs~D~k~rVfSayIK-~V---dekpap~pWgsk~PFG~lm~E~~~~ggwvh~ 211 (361)
T KOG1523|consen 140 ---HIKKPIRSTVTSLDWHPN-NVLLAAGSTDGKCRVFSAYIK-GV---DEKPAPTPWGSKMPFGQLMSEASSSGGWVHG 211 (361)
T ss_pred ---hhCCccccceeeeeccCC-cceecccccCcceeEEEEeee-cc---ccCCCCCCCccCCcHHHHHHhhccCCCceee
Confidence 001112457899999996 689999999999999975411 11 111111111111100111 111234558999
Q ss_pred EEEcCCCCEEEEEecCCcEEEEECCCCC
Q 005506 285 VTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 285 v~fspdg~~L~sgs~Dg~V~lwdl~~~~ 312 (693)
+.|+|+|..|+-.+.|+.|.+-|-..+.
T Consensus 212 v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 212 VLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred eEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 9999999999999999999999988754
No 185
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=1.6e-13 Score=143.65 Aligned_cols=182 Identities=23% Similarity=0.318 Sum_probs=132.1
Q ss_pred EeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCce-eeccCCCCeEEEEEecC-CCcEEE
Q 005506 87 SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA-LYQCHTRRVKKLAVEVG-NPHVVW 164 (693)
Q Consensus 87 ~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~-~~~~h~~~V~~la~sp~-~~~~l~ 164 (693)
.+ .||.+.|.|+.|+.+ |.+|++|+.|-.+.|||.-.. +++. .-.+|...|.++.|-|. +..+++
T Consensus 45 eL-~GH~GCVN~LeWn~d--G~lL~SGSDD~r~ivWd~~~~----------KllhsI~TgHtaNIFsvKFvP~tnnriv~ 111 (758)
T KOG1310|consen 45 EL-TGHTGCVNCLEWNAD--GELLASGSDDTRLIVWDPFEY----------KLLHSISTGHTANIFSVKFVPYTNNRIVL 111 (758)
T ss_pred hh-ccccceecceeecCC--CCEEeecCCcceEEeecchhc----------ceeeeeecccccceeEEeeeccCCCeEEE
Confidence 45 799999999999988 799999999999999999743 3343 34589999999999994 456888
Q ss_pred EEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 005506 165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD 244 (693)
Q Consensus 165 Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD 244 (693)
||+.|..|++||+...+.-. ...+..........|...|+.|+..|.+++.+.+++.||+||-||
T Consensus 112 sgAgDk~i~lfdl~~~~~~~---------------~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyD 176 (758)
T KOG1310|consen 112 SGAGDKLIKLFDLDSSKEGG---------------MDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYD 176 (758)
T ss_pred eccCcceEEEEecccccccc---------------cccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeec
Confidence 99999999999998643110 001112223333457778999999999889999999999999999
Q ss_pred cCCCCCCcccccCC-CCCCcccccccCccccCCCCccceEEEEEcCCCC-EEEEEecCCcEEEEEC
Q 005506 245 RRMLPPLTSCQKRM-SPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDV 308 (693)
Q Consensus 245 ~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~-~L~sgs~Dg~V~lwdl 308 (693)
+|.... +.... .+..|+.+ .+. + ....+++++|... +|++|+.|-.++|||.
T Consensus 177 iREph~---c~p~~~~~~~l~ny-~~~-l-------ielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 177 IREPHV---CNPDEDCPSILVNY-NPQ-L-------IELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred ccCCcc---CCccccccHHHHHh-chh-h-------heeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 996431 11101 11111111 111 1 1368899999764 7788888999999994
No 186
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=8.7e-14 Score=137.06 Aligned_cols=215 Identities=16% Similarity=0.199 Sum_probs=152.0
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCC
Q 005506 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 127 (693)
Q Consensus 48 gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~ 127 (693)
.|.-.|..+-....+.+|+|++.|..|.||++. |+.+..+ ......-+..+.+|+ |++|++++..-.|+||.+--.
T Consensus 185 kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~i-dtnq~~n~~aavSP~--GRFia~~gFTpDVkVwE~~f~ 260 (420)
T KOG2096|consen 185 KHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSI-DTNQSSNYDAAVSPD--GRFIAVSGFTPDVKVWEPIFT 260 (420)
T ss_pred hcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeee-ccccccccceeeCCC--CcEEEEecCCCCceEEEEEec
Confidence 466777778888889999999999999999998 8899888 445556677889999 799999999999999987532
Q ss_pred -CCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCcee
Q 005506 128 -SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206 (693)
Q Consensus 128 -~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 206 (693)
.+.. .....+..+++|...|..++|+| +...++|.+.||++++||+.-.-... ++ .. -++.+. .
T Consensus 261 kdG~f---qev~rvf~LkGH~saV~~~aFsn-~S~r~vtvSkDG~wriwdtdVrY~~~------qD-pk---~Lk~g~-~ 325 (420)
T KOG2096|consen 261 KDGTF---QEVKRVFSLKGHQSAVLAAAFSN-SSTRAVTVSKDGKWRIWDTDVRYEAG------QD-PK---ILKEGS-A 325 (420)
T ss_pred cCcch---hhhhhhheeccchhheeeeeeCC-CcceeEEEecCCcEEEeeccceEecC------CC-ch---HhhcCC-c
Confidence 1111 11234677899999999999999 66888899999999999975321100 00 00 011111 0
Q ss_pred eecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEE
Q 005506 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT 286 (693)
Q Consensus 207 ~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~ 286 (693)
++.. . ......++++|. +..||++ ....+.+|..++++.... +. ..|.. .|++|+
T Consensus 326 pl~a--a-g~~p~RL~lsP~-g~~lA~s-~gs~l~~~~se~g~~~~~----------~e---------~~h~~-~Is~is 380 (420)
T KOG2096|consen 326 PLHA--A-GSEPVRLELSPS-GDSLAVS-FGSDLKVFASEDGKDYPE----------LE---------DIHST-TISSIS 380 (420)
T ss_pred chhh--c-CCCceEEEeCCC-CcEEEee-cCCceEEEEcccCccchh----------HH---------HhhcC-ceeeEE
Confidence 1111 1 122338999997 6666654 456899999988754422 21 11333 599999
Q ss_pred EcCCCCEEEEEecCCcEEEEE
Q 005506 287 FSPNGEEVLLSYSGEHVYLMD 307 (693)
Q Consensus 287 fspdg~~L~sgs~Dg~V~lwd 307 (693)
|+++|+++++++ |..++++.
T Consensus 381 ~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 381 YSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred ecCCCcEEeeec-ceeeeeec
Confidence 999999988875 66777775
No 187
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=2.9e-14 Score=145.85 Aligned_cols=202 Identities=21% Similarity=0.280 Sum_probs=145.9
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCC
Q 005506 54 NAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD 133 (693)
Q Consensus 54 ~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~ 133 (693)
.+++|+.+|..|++|+.||++|||++.+...+... ..|.+.|.++.|+|+ +.+|++-+.| ..+||+...+..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e-~~~~~eV~DL~FS~d--gk~lasig~d-~~~VW~~~~g~~---- 219 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEE-IAHHAEVKDLDFSPD--GKFLASIGAD-SARVWSVNTGAA---- 219 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhh-HhhcCccccceeCCC--CcEEEEecCC-ceEEEEeccCch----
Confidence 68999999999999999999999998888777776 689999999999999 6999999999 999999997521
Q ss_pred CCCCCCceeec--cCCCCeEEEEEecCC--Cc--EEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceee
Q 005506 134 DNAITPSALYQ--CHTRRVKKLAVEVGN--PH--VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (693)
Q Consensus 134 ~~~~~~~~~~~--~h~~~V~~la~sp~~--~~--~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 207 (693)
+.... ...-....+.|..++ +. +++....-+.|++||+...+.- ....
T Consensus 220 ------~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~--------------------~~l~ 273 (398)
T KOG0771|consen 220 ------LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS--------------------NFLR 273 (398)
T ss_pred ------hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc--------------------cccc
Confidence 11111 122334555665422 12 2333334567778777544310 0001
Q ss_pred ecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEE
Q 005506 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 287 (693)
Q Consensus 208 l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~f 287 (693)
..........|++++++++ |+++|.|+.||.|-||+..+.+ +++++... |.. .||.|+|
T Consensus 274 ~~~~~~~~~siSsl~VS~d-Gkf~AlGT~dGsVai~~~~~lq-------------~~~~vk~a------H~~-~VT~ltF 332 (398)
T KOG0771|consen 274 LRKKIKRFKSISSLAVSDD-GKFLALGTMDGSVAIYDAKSLQ-------------RLQYVKEA------HLG-FVTGLTF 332 (398)
T ss_pred hhhhhhccCcceeEEEcCC-CcEEEEeccCCcEEEEEeceee-------------eeEeehhh------hee-eeeeEEE
Confidence 1111122347899999997 7999999999999999998763 33343323 333 5999999
Q ss_pred cCCCCEEEEEecCCcEEEEECCC
Q 005506 288 SPNGEEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 288 spdg~~L~sgs~Dg~V~lwdl~~ 310 (693)
+|+.+++++-+.+..+.|..+.-
T Consensus 333 ~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 333 SPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred cCCcCcccccccCCceeEEEEee
Confidence 99999999999998888887654
No 188
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.57 E-value=2.2e-13 Score=134.67 Aligned_cols=214 Identities=18% Similarity=0.267 Sum_probs=152.3
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEECCCC------------cEEEEeccCCCcceEEEEEe-------eCCCCCEEEE
Q 005506 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSR------------KLLHSIETGHSANVFCTKFV-------PETSDELVVS 112 (693)
Q Consensus 52 ~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~------------~~~~~l~~~h~~~I~sv~f~-------p~~~~~~l~s 112 (693)
-...+.|+|||+.|++-+.|..+.+|++... +...++.......|.+.+|- |+ ..++++
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~--t~l~a~ 128 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPS--TNLFAV 128 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCc--cceeee
Confidence 3456899999999999999999999998521 11122222345678888887 44 379999
Q ss_pred EeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCC---eEEEEEecCCCcEEEEEeCCCcEEEEeC-CCCCCCCCCCC
Q 005506 113 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR---VKKLAVEVGNPHVVWSASEDGTLRQHDF-RQGSSCPPAGS 188 (693)
Q Consensus 113 gs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~---V~~la~sp~~~~~l~Sgs~Dg~V~lwDl-r~~~~~~~~~~ 188 (693)
.+.+.-|++||.-+++.+. ....-.|... ..+++|+|++ ..|+ ++...+|++||+ |.+..++.-..
T Consensus 129 ssr~~PIh~wdaftG~lra--------Sy~~ydh~de~taAhsL~Fs~DG-eqlf-aGykrcirvFdt~RpGr~c~vy~t 198 (406)
T KOG2919|consen 129 SSRDQPIHLWDAFTGKLRA--------SYRAYDHQDEYTAAHSLQFSPDG-EQLF-AGYKRCIRVFDTSRPGRDCPVYTT 198 (406)
T ss_pred ccccCceeeeecccccccc--------chhhhhhHHhhhhheeEEecCCC-CeEe-ecccceEEEeeccCCCCCCcchhh
Confidence 9999999999998764322 1111124433 4689999955 4443 567799999999 66654421110
Q ss_pred CCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccc
Q 005506 189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFC 268 (693)
Q Consensus 189 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~ 268 (693)
+ .....+....|.|++|+|.+...+++|+....+-||.-....|+..+
T Consensus 199 --------~----------~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~ll-------------- 246 (406)
T KOG2919|consen 199 --------V----------TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLL-------------- 246 (406)
T ss_pred --------h----------hcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeee--------------
Confidence 0 00112345578899999998889999999999988887665443221
Q ss_pred cCccccCCCCccceEEEEEcCCCCEEEEEec-CCcEEEEECCCCCcceE
Q 005506 269 PMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGRAM 316 (693)
Q Consensus 269 ~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~-Dg~V~lwdl~~~~~~~~ 316 (693)
.+|.+ .||.+.|.++|+.|++|+. |..|..||++....+..
T Consensus 247 ------ggh~g-GvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~ 288 (406)
T KOG2919|consen 247 ------GGHGG-GVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVY 288 (406)
T ss_pred ------cccCC-CeeeEEeccCcCeecccccCCCeEEEEeehhccchhh
Confidence 35555 6999999999999999998 88999999998654433
No 189
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=1.4e-13 Score=153.60 Aligned_cols=265 Identities=15% Similarity=0.246 Sum_probs=187.3
Q ss_pred CCCCCcCcchhhhhcccccCCC----CCcCcccccchhhhcc---cceeEEe---ccC----CCcEEEEEECCCCCEEEE
Q 005506 2 ENFPFHDGSIYDMLDTRHTDTR----PDVNHSLQMHSSLVRR---LSQEREL---EGH----QGCVNAISWNSKGSLLIS 67 (693)
Q Consensus 2 ~~~~~~~~~~~~~~~~r~~~~~----~~~~~~l~~~~~~i~~---l~~~~~l---~gH----~~~V~~l~~s~~g~~LaS 67 (693)
+|=.|.+.+++++...++.+.. ..-+..+++|+.+... .+++.-. .++ .+.=.-+.|.....+|.+
T Consensus 1103 ~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~ 1182 (1387)
T KOG1517|consen 1103 DNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLV 1182 (1387)
T ss_pred cCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEe
Confidence 4555677778888877777654 4566788999886654 3333322 222 222234678886555666
Q ss_pred EeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCC
Q 005506 68 GSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHT 147 (693)
Q Consensus 68 gs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~ 147 (693)
+++-..|+|||....+++..+..+....|+++.-.-.. |++|++|..||.|++||.+..... ..+..+..|+
T Consensus 1183 tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~-gn~i~AGfaDGsvRvyD~R~a~~d-------s~v~~~R~h~ 1254 (1387)
T KOG1517|consen 1183 TGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVH-GNIIAAGFADGSVRVYDRRMAPPD-------SLVCVYREHN 1254 (1387)
T ss_pred cCCeeEEEEEecccceeEeecccCCCccceeecccccC-CceEEEeecCCceEEeecccCCcc-------ccceeecccC
Confidence 66678999999999999998877777788888766554 789999999999999999975432 3577888898
Q ss_pred CC--eEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcC
Q 005506 148 RR--VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS 225 (693)
Q Consensus 148 ~~--V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp 225 (693)
.. |..+.+.+.+-..|++|+.||.|++||+|...... .. .+.........++++.+++
T Consensus 1255 ~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~------------~~--------~iv~~~~yGs~lTal~VH~ 1314 (1387)
T KOG1517|consen 1255 DVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET------------FL--------TIVAHWEYGSALTALTVHE 1314 (1387)
T ss_pred CcccceeEEeecCCCcceeeeccCCeEEEEecccCcccc------------cc--------eeeeccccCccceeeeecc
Confidence 87 99999998555568899999999999999852110 00 0001111122588999999
Q ss_pred CCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEE
Q 005506 226 TRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYL 305 (693)
Q Consensus 226 ~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~l 305 (693)
. ...+|+|+. +.|+||++... .+..+. ..+.. -+.....+++++|+|---.|++|+.|.+|.|
T Consensus 1315 h-apiiAsGs~-q~ikIy~~~G~-~l~~~k-----------~n~~F---~~q~~gs~scL~FHP~~~llAaG~~Ds~V~i 1377 (1387)
T KOG1517|consen 1315 H-APIIASGSA-QLIKIYSLSGE-QLNIIK-----------YNPGF---MGQRIGSVSCLAFHPHRLLLAAGSADSTVSI 1377 (1387)
T ss_pred C-CCeeeecCc-ceEEEEecChh-hhcccc-----------cCccc---ccCcCCCcceeeecchhHhhhhccCCceEEE
Confidence 7 568999988 99999998632 222221 11111 1223336899999999999999999999999
Q ss_pred EECCCC
Q 005506 306 MDVNHA 311 (693)
Q Consensus 306 wdl~~~ 311 (693)
|....+
T Consensus 1378 Ys~~k~ 1383 (1387)
T KOG1517|consen 1378 YSCEKP 1383 (1387)
T ss_pred eecCCc
Confidence 987764
No 190
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=2.7e-13 Score=133.24 Aligned_cols=219 Identities=15% Similarity=0.167 Sum_probs=150.1
Q ss_pred EEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEe-cCCCcEE
Q 005506 85 LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE-VGNPHVV 163 (693)
Q Consensus 85 ~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~s-p~~~~~l 163 (693)
+..|..+|.+-|.++.|.+. |+.+|||+.|++|+|||.+..++ .+.....+.+|.+.|..|.|. |.-++.+
T Consensus 5 ~~pi~s~h~DlihdVs~D~~--GRRmAtCSsDq~vkI~d~~~~s~------~W~~Ts~Wrah~~Si~rV~WAhPEfGqvv 76 (361)
T KOG2445|consen 5 MAPIDSGHKDLIHDVSFDFY--GRRMATCSSDQTVKIWDSTSDSG------TWSCTSSWRAHDGSIWRVVWAHPEFGQVV 76 (361)
T ss_pred ccccccCCcceeeeeeeccc--CceeeeccCCCcEEEEeccCCCC------ceEEeeeEEecCCcEEEEEecCccccceE
Confidence 34566789999999999998 79999999999999999875443 346677889999999999995 5567899
Q ss_pred EEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCC-CcEEEEEeCCCcEEE
Q 005506 164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARL 242 (693)
Q Consensus 164 ~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~-~~~Latgs~Dg~Iri 242 (693)
++++.|+++.||.=.... .++...-| ............|+.+.|.|.. |-.||+++.||.+||
T Consensus 77 A~cS~Drtv~iWEE~~~~---------~~~~~~~W-------v~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRI 140 (361)
T KOG2445|consen 77 ATCSYDRTVSIWEEQEKS---------EEAHGRRW-------VRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRI 140 (361)
T ss_pred EEEecCCceeeeeecccc---------ccccccee-------EEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEE
Confidence 999999999999753211 01111111 1112222345679999999953 567899999999999
Q ss_pred EecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCC---CCEEEEEecC-----CcEEEEECCCCCc-
Q 005506 243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN---GEEVLLSYSG-----EHVYLMDVNHAGG- 313 (693)
Q Consensus 243 wD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspd---g~~L~sgs~D-----g~V~lwdl~~~~~- 313 (693)
|+....-.+..+.... .+..... ..+....+..+|.|+|. ..+|++|+.+ +.++||.......
T Consensus 141 YEA~dp~nLs~W~Lq~-------Ei~~~~~-pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rK 212 (361)
T KOG2445|consen 141 YEAPDPMNLSQWTLQH-------EIQNVID-PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRK 212 (361)
T ss_pred EecCCccccccchhhh-------hhhhccC-CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcce
Confidence 9987655444332110 0000000 01122225789999975 3677777765 4899998876542
Q ss_pred ---ceEEeecCCCceeEEeccCCCc
Q 005506 314 ---RAMRYTVGDASKIMSFTPTLNG 335 (693)
Q Consensus 314 ---~~~~~~~~~~~~~~~~~p~~~g 335 (693)
...+..+.++++.++|.|....
T Consensus 213 w~kva~L~d~~dpI~di~wAPn~Gr 237 (361)
T KOG2445|consen 213 WLKVAELPDHTDPIRDISWAPNIGR 237 (361)
T ss_pred eeeehhcCCCCCcceeeeeccccCC
Confidence 2223466788999999997543
No 191
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.56 E-value=6e-14 Score=142.52 Aligned_cols=214 Identities=17% Similarity=0.263 Sum_probs=151.8
Q ss_pred CCcEEEEEECCCCC-EEEEEeCCCcEEEEECCCCc---------EEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcE
Q 005506 50 QGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRK---------LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (693)
Q Consensus 50 ~~~V~~l~~s~~g~-~LaSgs~Dg~I~IWd~~~~~---------~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V 119 (693)
..+|.++.|.++.. .||||+.|..|+||-+..+. .+..+ ..|...|++|.|+|+ |++|++|+.+|.|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~L-s~H~~aVN~vRf~p~--gelLASg~D~g~v 89 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSL-SRHTRAVNVVRFSPD--GELLASGGDGGEV 89 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecc-cCCcceeEEEEEcCC--cCeeeecCCCceE
Confidence 46899999999766 99999999999999876432 22344 789999999999999 7999999999999
Q ss_pred EEEEcCCCCC------CCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCccc
Q 005506 120 RLFNLSRFSG------RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 193 (693)
Q Consensus 120 ~vwdl~~~~~------~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~ 193 (693)
.+|-...-.. .......+...+.+.+|...|..++|+| +++++++++.|.++++||+..+...
T Consensus 90 ~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l~---------- 158 (434)
T KOG1009|consen 90 FLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQLL---------- 158 (434)
T ss_pred EEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccceeE----------
Confidence 9998762100 0001122344567778999999999999 6789999999999999999987622
Q ss_pred ceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCccccc--------CCCCCCccc
Q 005506 194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK--------RMSPPPCVN 265 (693)
Q Consensus 194 ~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~--------~~~~~~~~~ 265 (693)
.....|...+.-++|.|- ++++++=+.|...+.+.+...+.+..... ........+
T Consensus 159 ---------------~~~~dh~~yvqgvawDpl-~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~r 222 (434)
T KOG1009|consen 159 ---------------AILDDHEHYVQGVAWDPL-NQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTR 222 (434)
T ss_pred ---------------eeccccccccceeecchh-hhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceee
Confidence 223356667888999997 68888888888777777664433222110 011111222
Q ss_pred ccccCccccCCCCccceEEEEEcCCCCEEEEEec
Q 005506 266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS 299 (693)
Q Consensus 266 ~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~ 299 (693)
.|....+. .-...++|+|+|.+|++..+
T Consensus 223 LfhDeTlk------sFFrRlsfTPdG~llvtPag 250 (434)
T KOG1009|consen 223 LFHDETLK------SFFRRLSFTPDGSLLVTPAG 250 (434)
T ss_pred eeecCchh------hhhhhcccCCCCcEEEcccc
Confidence 22111111 13566899999999998765
No 192
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.55 E-value=4.7e-14 Score=149.42 Aligned_cols=204 Identities=18% Similarity=0.256 Sum_probs=144.6
Q ss_pred CCcEEEEEECC-CCCEEEEEeCCCcEEEEECCCC-------cEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 005506 50 QGCVNAISWNS-KGSLLISGSDDTHINVWSYSSR-------KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 121 (693)
Q Consensus 50 ~~~V~~l~~s~-~g~~LaSgs~Dg~I~IWd~~~~-------~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~v 121 (693)
...|+.+.|+| |...||++++||.|+||.+..+ .....+ +.|...|+++.|+|-. .+.|++++.|.+|++
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~l-t~h~eKI~slRfHPLA-advLa~asyd~Ti~l 704 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKIL-TIHGEKITSLRFHPLA-ADVLAVASYDSTIEL 704 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceee-ecccceEEEEEecchh-hhHhhhhhccceeee
Confidence 45799999999 7889999999999999998754 233344 7899999999999986 679999999999999
Q ss_pred EEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEecc
Q 005506 122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR 201 (693)
Q Consensus 122 wdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~ 201 (693)
||+... .....+.+|++.|..++|+| ++..++|.+.||+|++|.-|+.......+.+..
T Consensus 705 WDl~~~----------~~~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpv---------- 763 (1012)
T KOG1445|consen 705 WDLANA----------KLYSRLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSREQPVYEGKGPV---------- 763 (1012)
T ss_pred eehhhh----------hhhheeccCcCceeEEEECC-CCcceeeeecCceEEEeCCCCCCCccccCCCCc----------
Confidence 999975 44567889999999999999 779999999999999999998764422111110
Q ss_pred CCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCC----CcEEEEecCCCC--CCcccccCCCCCCcccccccCccccC
Q 005506 202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD----AFARLYDRRMLP--PLTSCQKRMSPPPCVNYFCPMHLSEH 275 (693)
Q Consensus 202 ~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~D----g~IriwD~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (693)
...-..|.|--+ ++++++.+.| ..|.+||..+.. ++........|
T Consensus 764 -------------gtRgARi~wacd-gr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvap--------------- 814 (1012)
T KOG1445|consen 764 -------------GTRGARILWACD-GRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAP--------------- 814 (1012)
T ss_pred -------------cCcceeEEEEec-CcEEEEecccccchhhhhhhhhhhccCCcceeeeecccC---------------
Confidence 012234555554 5666666544 457788876543 11110000000
Q ss_pred CCCccceEEEEEcCCCC-EEEEEecCCcEEEEECCC
Q 005506 276 GRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 276 ~~~~~~V~~v~fspdg~-~L~sgs~Dg~V~lwdl~~ 310 (693)
.+.--.+.+|.. .+++|-+|..|++|.+-.
T Consensus 815 -----s~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 815 -----SPLVPHYDYDSNVLFLTGKGDRFVNMYEVIY 845 (1012)
T ss_pred -----ccccccccCCCceEEEecCCCceEEEEEecC
Confidence 011112344554 456777799999999876
No 193
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=9.4e-13 Score=125.48 Aligned_cols=220 Identities=15% Similarity=0.182 Sum_probs=147.1
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEECCC---------CcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 005506 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSS---------RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 121 (693)
Q Consensus 51 ~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~---------~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~v 121 (693)
..|.+-+|+|.+++|+.|+.+|.|.+..+.+ ++....-..+|.++|..++|.. .+|++|+ ||.|+-
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d----~~Lls~g-dG~V~g 85 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD----DFLLSGG-DGLVYG 85 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh----hheeecc-CceEEE
Confidence 3567778999999999999999999998863 2222222379999999999983 4777775 599999
Q ss_pred EEcCCCCCCCCCCCC---CCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEE
Q 005506 122 FNLSRFSGRGLDDNA---ITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (693)
Q Consensus 122 wdl~~~~~~~~~~~~---~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~ 198 (693)
|..+......-.... ..|.++-...-..|+++...|..+.+| .++.|+.++.||+.+++.
T Consensus 86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~-~AgGD~~~y~~dlE~G~i---------------- 148 (325)
T KOG0649|consen 86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL-FAGGDGVIYQVDLEDGRI---------------- 148 (325)
T ss_pred eeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE-EecCCeEEEEEEecCCEE----------------
Confidence 988743210000000 011111111234688999999665555 566899999999998752
Q ss_pred eccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCC
Q 005506 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (693)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (693)
.....+|+..|.++.--.. ...+++|+.||++|+||.++.+.+..+.. ...+.|+ +.|-
T Consensus 149 ---------~r~~rGHtDYvH~vv~R~~-~~qilsG~EDGtvRvWd~kt~k~v~~ie~-yk~~~~l----------Rp~~ 207 (325)
T KOG0649|consen 149 ---------QREYRGHTDYVHSVVGRNA-NGQILSGAEDGTVRVWDTKTQKHVSMIEP-YKNPNLL----------RPDW 207 (325)
T ss_pred ---------EEEEcCCcceeeeeeeccc-CcceeecCCCccEEEEeccccceeEEecc-ccChhhc----------Cccc
Confidence 1233477888888887443 34799999999999999999875544321 1111222 2234
Q ss_pred ccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceE
Q 005506 279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM 316 (693)
Q Consensus 279 ~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~ 316 (693)
+.+|.+++-+. .+|+ +++...+.+|.+++.+...+
T Consensus 208 g~wigala~~e--dWlv-CGgGp~lslwhLrsse~t~v 242 (325)
T KOG0649|consen 208 GKWIGALAVNE--DWLV-CGGGPKLSLWHLRSSESTCV 242 (325)
T ss_pred CceeEEEeccC--ceEE-ecCCCceeEEeccCCCceEE
Confidence 44777777654 4554 55667899999999664333
No 194
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.52 E-value=3.6e-12 Score=132.61 Aligned_cols=257 Identities=14% Similarity=0.151 Sum_probs=174.6
Q ss_pred ccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEECCCCcEEE---EeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 005506 47 EGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLH---SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (693)
Q Consensus 47 ~gH~~~V~~l~~s~~g-~~LaSgs~Dg~I~IWd~~~~~~~~---~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vw 122 (693)
+.-+..|....|+|.+ +++++++ .+.+..|++..+.... .+......-|.|++|.++ .-++||..+|.|.||
T Consensus 197 k~sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~en---gdviTgDS~G~i~Iw 272 (626)
T KOG2106|consen 197 KTSNEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLEN---GDVITGDSGGNILIW 272 (626)
T ss_pred eeccceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEcCC---CCEEeecCCceEEEE
Confidence 3345678899999955 5555655 5899999998876544 343334478999999998 358899999999999
Q ss_pred EcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccce-------
Q 005506 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN------- 195 (693)
Q Consensus 123 dl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~------- 195 (693)
+.... ...+....|.+.|.+++... ++.++ ||+.|..|..||-.-.+..+...+.......
T Consensus 273 ~~~~~----------~~~k~~~aH~ggv~~L~~lr-~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~ 340 (626)
T KOG2106|consen 273 SKGTN----------RISKQVHAHDGGVFSLCMLR-DGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKG 340 (626)
T ss_pred eCCCc----------eEEeEeeecCCceEEEEEec-CccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCC
Confidence 99753 33444458999999999987 55555 7999999999994322211111111111111
Q ss_pred -EEEeccCCceee-------ecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCccccc
Q 005506 196 -ILLDLRCGAKRS-------LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYF 267 (693)
Q Consensus 196 -~l~~~~~~~~~~-------l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~ 267 (693)
.++....+.... -....+|......++.+|+ ..+++|++.|+.+++|+ ..+++.+.
T Consensus 341 di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps-~~q~~T~gqdk~v~lW~--~~k~~wt~------------- 404 (626)
T KOG2106|consen 341 DILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPS-KNQLLTCGQDKHVRLWN--DHKLEWTK------------- 404 (626)
T ss_pred cEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCC-hhheeeccCcceEEEcc--CCceeEEE-------------
Confidence 122111111100 0111245667889999998 57999999999999999 32222111
Q ss_pred ccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCcccccCCccccc
Q 005506 268 CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFL 346 (693)
Q Consensus 268 ~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~ 346 (693)
....++.++.|+|.| .|++|...|.-.+.|..+........ ...+..++.|+|+..-++.........
T Consensus 405 ---------~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d~~~ls~v~ysp~G~~lAvgs~d~~iy 472 (626)
T KOG2106|consen 405 ---------IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-DNEQLSVVRYSPDGAFLAVGSHDNHIY 472 (626)
T ss_pred ---------EecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-cCCceEEEEEcCCCCEEEEecCCCeEE
Confidence 111257899999999 99999999999999999944333333 378889999999988777666555444
No 195
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.50 E-value=2e-12 Score=146.79 Aligned_cols=233 Identities=18% Similarity=0.186 Sum_probs=160.2
Q ss_pred cccceeEEeccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEECCCC-------cEEEEeccCCCcceEEEEEeeCCCCCE
Q 005506 38 RRLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSR-------KLLHSIETGHSANVFCTKFVPETSDEL 109 (693)
Q Consensus 38 ~~l~~~~~l~gH~~~V~~l~~s~~-g~~LaSgs~Dg~I~IWd~~~~-------~~~~~l~~~h~~~I~sv~f~p~~~~~~ 109 (693)
-++.+++.|..|...|+.++.++. +.+++|||+||+|+||+.... +...++ ......+.++.+++. ++.
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~lty-s~~~sr~~~vt~~~~--~~~ 1112 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTY-SPEGSRVEKVTMCGN--GDQ 1112 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEE-eccCCceEEEEeccC--CCe
Confidence 456788899999999999999885 499999999999999998632 223333 235678999999998 689
Q ss_pred EEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCC-CC-eEEEEEecCCCc-EEEEEeCCCcEEEEeCCCCCCCCCC
Q 005506 110 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHT-RR-VKKLAVEVGNPH-VVWSASEDGTLRQHDFRQGSSCPPA 186 (693)
Q Consensus 110 l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~-~~-V~~la~sp~~~~-~l~Sgs~Dg~V~lwDlr~~~~~~~~ 186 (693)
+|.++.||.|++.++........ ..........+. +. |..-++...... .++.+..-+.|..||+|+.+..
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~---~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~--- 1186 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKR---VATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA--- 1186 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccc---eeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH---
Confidence 99999999999999986311110 001111122222 22 333344433333 7778888899999999986522
Q ss_pred CCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccc
Q 005506 187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266 (693)
Q Consensus 187 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~ 266 (693)
|.+. .+-..+.|++++++|. ++++++|...|.+.+||+|-..++.++..+.
T Consensus 1187 -----------w~lk---------~~~~hG~vTSi~idp~-~~WlviGts~G~l~lWDLRF~~~i~sw~~P~-------- 1237 (1431)
T KOG1240|consen 1187 -----------WRLK---------NQLRHGLVTSIVIDPW-CNWLVIGTSRGQLVLWDLRFRVPILSWEHPA-------- 1237 (1431)
T ss_pred -----------Hhhh---------cCccccceeEEEecCC-ceEEEEecCCceEEEEEeecCceeecccCcc--------
Confidence 1111 1123457999999997 6899999999999999999877766654321
Q ss_pred cccCccccCCCCccceEEEEEcCC---CCEEEE-Ee-cCCcEEEEECCCCCcceEEeec
Q 005506 267 FCPMHLSEHGRSSLHLTHVTFSPN---GEEVLL-SY-SGEHVYLMDVNHAGGRAMRYTV 320 (693)
Q Consensus 267 ~~~~~~~~~~~~~~~V~~v~fspd---g~~L~s-gs-~Dg~V~lwdl~~~~~~~~~~~~ 320 (693)
. .+|+.+..+|- ....++ ++ ..+.|-+|++.++.+..++...
T Consensus 1238 -----------~-~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1238 -----------R-APIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWAS 1284 (1431)
T ss_pred -----------c-CCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcC
Confidence 1 24666666653 344444 44 4789999999998655555544
No 196
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.49 E-value=2.4e-13 Score=144.09 Aligned_cols=202 Identities=15% Similarity=0.181 Sum_probs=151.7
Q ss_pred CCCCEEEE--EeCCCcEEEEECCCC-c----EEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCC
Q 005506 60 SKGSLLIS--GSDDTHINVWSYSSR-K----LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL 132 (693)
Q Consensus 60 ~~g~~LaS--gs~Dg~I~IWd~~~~-~----~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~ 132 (693)
.+..++|+ .+.-|.|-||++... + .+-.+ -....|+++.|.|-. .+.|+.++.||.|++|.+.....
T Consensus 589 an~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l--~Ngt~vtDl~WdPFD-~~rLAVa~ddg~i~lWr~~a~gl--- 662 (1012)
T KOG1445|consen 589 ANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGL--FNGTLVTDLHWDPFD-DERLAVATDDGQINLWRLTANGL--- 662 (1012)
T ss_pred eccceEEEEecCCCceEEEEEcCCCCCCCccccccc--ccCceeeecccCCCC-hHHeeecccCceEEEEEeccCCC---
Confidence 34455554 355689999999753 2 22233 245689999999985 78999999999999999986432
Q ss_pred CCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCC
Q 005506 133 DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPP 212 (693)
Q Consensus 133 ~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~ 212 (693)
..+...+...+..|...|++|.|+|--.++|++++.|-+|++||+++.... ....
T Consensus 663 ~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~-------------------------~~l~ 717 (1012)
T KOG1445|consen 663 PENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLY-------------------------SRLV 717 (1012)
T ss_pred CcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhh-------------------------heec
Confidence 223446778889999999999999988889999999999999999987521 2234
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCC
Q 005506 213 KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE 292 (693)
Q Consensus 213 ~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~ 292 (693)
+|+..|..++|||+ |+.+|+.|.||+|++|..++...- +... .+..+..--.|.|.-+|+
T Consensus 718 gHtdqIf~~AWSpd-Gr~~AtVcKDg~~rVy~Prs~e~p--v~Eg-----------------~gpvgtRgARi~wacdgr 777 (1012)
T KOG1445|consen 718 GHTDQIFGIAWSPD-GRRIATVCKDGTLRVYEPRSREQP--VYEG-----------------KGPVGTRGARILWACDGR 777 (1012)
T ss_pred cCcCceeEEEECCC-CcceeeeecCceEEEeCCCCCCCc--cccC-----------------CCCccCcceeEEEEecCc
Confidence 68889999999997 799999999999999999876421 0000 111111234688999999
Q ss_pred EEEEEecC----CcEEEEECCCCC
Q 005506 293 EVLLSYSG----EHVYLMDVNHAG 312 (693)
Q Consensus 293 ~L~sgs~D----g~V~lwdl~~~~ 312 (693)
++++.+.| .+|.+||..+..
T Consensus 778 ~viv~Gfdk~SeRQv~~Y~Aq~l~ 801 (1012)
T KOG1445|consen 778 IVIVVGFDKSSERQVQMYDAQTLD 801 (1012)
T ss_pred EEEEecccccchhhhhhhhhhhcc
Confidence 99988775 478889887743
No 197
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.48 E-value=1.2e-11 Score=124.67 Aligned_cols=217 Identities=20% Similarity=0.316 Sum_probs=149.2
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccC--CCcceEEEEEeeCCCCCEEEEE--eCCCcEEEEEcCC
Q 005506 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG--HSANVFCTKFVPETSDELVVSG--AGDAEVRLFNLSR 126 (693)
Q Consensus 51 ~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~--h~~~I~sv~f~p~~~~~~l~sg--s~Dg~V~vwdl~~ 126 (693)
..|.++.++. ++|+++-.+ .|.|||+.+++.++++... +...+.+ ++|+..+.+++-= ...|.|.|||..+
T Consensus 88 t~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~A--lS~n~~n~ylAyp~s~t~GdV~l~d~~n 162 (391)
T KOG2110|consen 88 TSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCA--LSPNNANCYLAYPGSTTSGDVVLFDTIN 162 (391)
T ss_pred CceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEe--eccCCCCceEEecCCCCCceEEEEEccc
Confidence 4677777764 467777665 4999999999999998644 4444444 4444335677643 2468999999986
Q ss_pred CCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCc-EEEEeCCCCCCCCCCCCCCcccceEEEeccCCce
Q 005506 127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT-LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (693)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~-V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (693)
. .++..+.+|.+.+-+|+|+| ++.+|||+++.|+ ||+|.+.+++ .++.++.|..
T Consensus 163 l----------~~v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~--------------kl~eFRRG~~ 217 (391)
T KOG2110|consen 163 L----------QPVNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQ--------------KLYEFRRGTY 217 (391)
T ss_pred c----------eeeeEEEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCcc--------------EeeeeeCCce
Confidence 5 67889999999999999999 8899999999996 6799997775 3455554432
Q ss_pred eeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCC----------------CCC------c
Q 005506 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS----------------PPP------C 263 (693)
Q Consensus 206 ~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~----------------~~~------~ 263 (693)
...|.+++|+|+ +.+|++.++.++|.+|.+..-... ....+.. |.. .
T Consensus 218 ---------~~~IySL~Fs~d-s~~L~~sS~TeTVHiFKL~~~~~~-~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~ 286 (391)
T KOG2110|consen 218 ---------PVSIYSLSFSPD-SQFLAASSNTETVHIFKLEKVSNN-PPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQ 286 (391)
T ss_pred ---------eeEEEEEEECCC-CCeEEEecCCCeEEEEEecccccC-CCCCCCCCCcccchhhhhhhhhcchhhhhhhhh
Confidence 457899999998 689999999999999998754311 1000000 000 0
Q ss_pred ccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCC
Q 005506 264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~ 310 (693)
.+.|...++...++. .+..+.-.+...++.+++.||++|.|.+.-
T Consensus 287 ~R~FAt~~l~~s~~~--~~~~l~~~~~~~~v~vas~dG~~y~y~l~~ 331 (391)
T KOG2110|consen 287 SRKFATAKLPESGRK--NICSLSSIQKIPRVLVASYDGHLYSYRLPP 331 (391)
T ss_pred ccceeEEEccCCCcc--ceEEeeccCCCCEEEEEEcCCeEEEEEcCC
Confidence 011111112221211 233343346889999999999999999876
No 198
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.48 E-value=2.3e-11 Score=130.91 Aligned_cols=229 Identities=26% Similarity=0.405 Sum_probs=165.0
Q ss_pred CcccccchhhhcccceeEEeccCC-CcEEEEEE-CCCCC-EEEEEeC-CCcEEEEECCC-CcEEEEeccCCCcceEEEEE
Q 005506 27 NHSLQMHSSLVRRLSQERELEGHQ-GCVNAISW-NSKGS-LLISGSD-DTHINVWSYSS-RKLLHSIETGHSANVFCTKF 101 (693)
Q Consensus 27 ~~~l~~~~~~i~~l~~~~~l~gH~-~~V~~l~~-s~~g~-~LaSgs~-Dg~I~IWd~~~-~~~~~~l~~~h~~~I~sv~f 101 (693)
+..+.+|...... .....+.++. ..+..+.+ ++++. .++..+. |+.+.+|+... ......+ ..|...|.+++|
T Consensus 86 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~ 163 (466)
T COG2319 86 DGTIKLWDLDNGE-KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTL-EGHSESVTSLAF 163 (466)
T ss_pred CCcEEEEEcCCCc-eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEE-ecCcccEEEEEE
Confidence 4455555433222 3556666644 37888888 78877 5555455 99999999987 6666666 789999999999
Q ss_pred eeCCCCCEEEEEeC-CCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 005506 102 VPETSDELVVSGAG-DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180 (693)
Q Consensus 102 ~p~~~~~~l~sgs~-Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~ 180 (693)
+|+ +..+++++. |+.+++|++... ..+..+..|...|.+++|+|.++.++++++.|+.|++||...+
T Consensus 164 ~~~--~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~ 231 (466)
T COG2319 164 SPD--GKLLASGSSLDGTIKLWDLRTG----------KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG 231 (466)
T ss_pred CCC--CCEEEecCCCCCceEEEEcCCC----------ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC
Confidence 999 568888875 999999999863 4577778899999999999855446666699999999987743
Q ss_pred CCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCC
Q 005506 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP 260 (693)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~ 260 (693)
... .. ....|.... -..|+|++ .++++++.|+.+++|+.+....
T Consensus 232 ~~~--------------~~----------~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~---------- 275 (466)
T COG2319 232 KLL--------------RS----------TLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSS---------- 275 (466)
T ss_pred cEE--------------ee----------ecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCc----------
Confidence 311 00 111222232 22799974 7888999999999999986542
Q ss_pred CCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcce
Q 005506 261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRA 315 (693)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~ 315 (693)
++..+ .+| ...|.++.|+|++..+++++.|+.+.+||+.+.....
T Consensus 276 --~~~~~-------~~~-~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 320 (466)
T COG2319 276 --LLRTL-------SGH-SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLS 320 (466)
T ss_pred --EEEEE-------ecC-CccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEE
Confidence 01111 122 2369999999999999998889899999988855333
No 199
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=2.6e-12 Score=143.69 Aligned_cols=217 Identities=16% Similarity=0.308 Sum_probs=152.6
Q ss_pred ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccC--CCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEc
Q 005506 47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG--HSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 124 (693)
Q Consensus 47 ~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~--h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl 124 (693)
.+..++-..+.|+|-...++++.+.-.|+|||.+.++++..+..+ ....|+.+++....+..++++|+.||.||||+-
T Consensus 1061 ~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~ 1140 (1387)
T KOG1517|consen 1061 TGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKD 1140 (1387)
T ss_pred hcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecc
Confidence 345556778899998888999887789999999999998877433 346899999998876789999999999999976
Q ss_pred CCCC-CCCCCCCCCCCceeeccC-------CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceE
Q 005506 125 SRFS-GRGLDDNAITPSALYQCH-------TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (693)
Q Consensus 125 ~~~~-~~~~~~~~~~~~~~~~~h-------~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~ 196 (693)
-... ++. +.+..+.+- .+.=.-+.|..+.+.++++ |.-..|+|||......+
T Consensus 1141 y~~~~~~~------eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~t-Gd~r~IRIWDa~~E~~~------------- 1200 (1387)
T KOG1517|consen 1141 YADKWKKP------ELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVT-GDVRSIRIWDAHKEQVV------------- 1200 (1387)
T ss_pred cccccCCc------eeEEeeccccccCccCCCCCeeeehhhhCCeEEec-CCeeEEEEEecccceeE-------------
Confidence 5432 111 222222211 1111345787766666654 45789999999876533
Q ss_pred EEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCC
Q 005506 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (693)
Q Consensus 197 l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (693)
.++..+ ....+++++-+-..++++++|..||.||+||.|+..+-. .+..+ +.
T Consensus 1201 -~diP~~----------s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds----------~v~~~-------R~ 1252 (1387)
T KOG1517|consen 1201 -ADIPYG----------SSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDS----------LVCVY-------RE 1252 (1387)
T ss_pred -eecccC----------CCccceeecccccCCceEEEeecCCceEEeecccCCccc----------cceee-------cc
Confidence 222211 234567777766668999999999999999999754311 11111 11
Q ss_pred CCc-cceEEEEEcCCCC-EEEEEecCCcEEEEECCCC
Q 005506 277 RSS-LHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHA 311 (693)
Q Consensus 277 ~~~-~~V~~v~fspdg~-~L~sgs~Dg~V~lwdl~~~ 311 (693)
|.. .+|..+.+.+.|- .|++|+.+|.|++||++..
T Consensus 1253 h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1253 HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred cCCcccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence 222 1389999999774 5999999999999999984
No 200
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=4.9e-12 Score=127.59 Aligned_cols=256 Identities=11% Similarity=0.075 Sum_probs=172.4
Q ss_pred ceeEEeccC-CCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEecc-CCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 005506 41 SQERELEGH-QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIET-GHSANVFCTKFVPETSDELVVSGAGDAE 118 (693)
Q Consensus 41 ~~~~~l~gH-~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~-~h~~~I~sv~f~p~~~~~~l~sgs~Dg~ 118 (693)
+++.....| ...|.||+|+..+++|.+|..+++|.+.|+++.+.+..+.. ...+.|..+..+|. ++.|++.+.++.
T Consensus 95 KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~--DN~~~~~t~~~~ 172 (609)
T KOG4227|consen 95 KPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPT--DNTLIVVTRAKL 172 (609)
T ss_pred CCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCC--CceEEEEecCce
Confidence 666666554 48999999999999999999999999999999888877621 23458999999999 689999999999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCC-------CCCc
Q 005506 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG-------SSHQ 191 (693)
Q Consensus 119 V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~-------~~~~ 191 (693)
|.+||++..... +.++. ..........+.|+|..+.+|++.++.+-+-+||+|......... ....
T Consensus 173 V~~~D~Rd~~~~------~~~~~-~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~ 245 (609)
T KOG4227|consen 173 VSFIDNRDRQNP------ISLVL-PANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENT 245 (609)
T ss_pred EEEEeccCCCCC------Cceee-ecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccch
Confidence 999999864311 12222 222445678899999999999999999999999999876431000 0000
Q ss_pred ccc-------------------eEEEeccCCceeeecCCCC-----CccceEEEEEcCCCCcEEEEEeCCCcEEEEecCC
Q 005506 192 ECR-------------------NILLDLRCGAKRSLADPPK-----QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (693)
Q Consensus 192 ~~~-------------------~~l~~~~~~~~~~l~~~~~-----~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~ 247 (693)
+.. -+++++.+.....+..-.. ....+++++|-.+ .-+++|+.+-.|+||.+..
T Consensus 246 ~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D--~~v~tGSD~~~i~~WklP~ 323 (609)
T KOG4227|consen 246 EWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDD--YTVATGSDHWGIHIWKLPR 323 (609)
T ss_pred hhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecc--eeeeccCcccceEEEecCC
Confidence 011 1233333322222221111 1235677888775 4599999999999999875
Q ss_pred CCCCccc---ccCC--CCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCC
Q 005506 248 LPPLTSC---QKRM--SPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 248 ~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~ 310 (693)
......+ .... -|... .+.......+||.. .++.|.|+|....|++++-...++||.-..
T Consensus 324 ~~ds~G~~~IG~~~~~~~~~~--~i~~~~~VLrGHRS-v~NQVRF~~H~~~l~SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 324 ANDSYGFTQIGHDEEEMPSEI--FIEKELTVLRGHRS-VPNQVRFSQHNNLLVSSGVENSFKLWSDHR 388 (609)
T ss_pred CccccCccccCcchhhCchhh--eecceeEEEecccc-cccceeecCCcceEeccchhhheecccccc
Confidence 4322211 1100 01000 01111122256776 589999999999888888899999997655
No 201
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=4.8e-12 Score=139.81 Aligned_cols=226 Identities=12% Similarity=0.099 Sum_probs=144.0
Q ss_pred eEEeccCCCcEEEEEECCCCCEEEEEeCC---CcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEE-eCCCc
Q 005506 43 ERELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSG-AGDAE 118 (693)
Q Consensus 43 ~~~l~gH~~~V~~l~~s~~g~~LaSgs~D---g~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sg-s~Dg~ 118 (693)
.+.+..|...|.+.+|+|+|+.||.++.+ ..|.+||+.+++... + ....+....++|+|+ ++.|+.+ ..+|.
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l-~~~~g~~~~~~wSPD--G~~La~~~~~~g~ 271 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-V-ASFRGHNGAPAFSPD--GSRLAFASSKDGV 271 (429)
T ss_pred ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-E-ecCCCccCceeECCC--CCEEEEEEecCCc
Confidence 45677888899999999999999988754 369999998875422 1 112223457899999 5777665 46887
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEE
Q 005506 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (693)
Q Consensus 119 V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~ 198 (693)
+.||.+.... .....+..+...+....|+|++..+++++..+|...+|++...... ..+
T Consensus 272 ~~Iy~~d~~~---------~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~-----------~~~- 330 (429)
T PRK01742 272 LNIYVMGANG---------GTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG-----------ASL- 330 (429)
T ss_pred EEEEEEECCC---------CCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-----------eEE-
Confidence 7776554222 1233445566778899999965555556667888999987643211 000
Q ss_pred eccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCC
Q 005506 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (693)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (693)
+ .. .. .+..|+|+ +++|++++.++ +.+||+.+++... .... .
T Consensus 331 ---------l-~~---~~--~~~~~SpD-G~~ia~~~~~~-i~~~Dl~~g~~~~--------------lt~~------~- 372 (429)
T PRK01742 331 ---------V-GG---RG--YSAQISAD-GKTLVMINGDN-VVKQDLTSGSTEV--------------LSST------F- 372 (429)
T ss_pred ---------e-cC---CC--CCccCCCC-CCEEEEEcCCC-EEEEECCCCCeEE--------------ecCC------C-
Confidence 1 00 11 34679997 67787777665 5569987653210 0000 0
Q ss_pred ccceEEEEEcCCCCEEEEEecCCcEEEEECC--CCCcceEEeecCCCceeEEeccCC
Q 005506 279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN--HAGGRAMRYTVGDASKIMSFTPTL 333 (693)
Q Consensus 279 ~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~--~~~~~~~~~~~~~~~~~~~~~p~~ 333 (693)
....+.|+|+|++|+.++.++.+.+|++. ++.....+..+.......+|+|..
T Consensus 373 --~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~~ 427 (429)
T PRK01742 373 --LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPYL 427 (429)
T ss_pred --CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCCC
Confidence 12357899999999999999988888764 333333333334445556677653
No 202
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.45 E-value=3.5e-11 Score=129.43 Aligned_cols=229 Identities=26% Similarity=0.403 Sum_probs=164.0
Q ss_pred EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCc-EEEEeccCCCcceEEEEE-eeCCCCC-EEEEEeC-CCcEE
Q 005506 45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-LLHSIETGHSANVFCTKF-VPETSDE-LVVSGAG-DAEVR 120 (693)
Q Consensus 45 ~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~-~~~~l~~~h~~~I~sv~f-~p~~~~~-~l~sgs~-Dg~V~ 120 (693)
.+.+|...|.++.+.+.+..++.++.|+.+.+|+...+. .+..+...+...+..+.+ .++ +. +++..+. |+.+.
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPD--GNSILLASSSLDGTVK 137 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCC--cceEEeccCCCCccEE
Confidence 567899999999999999999999999999999998876 666663223347888888 555 44 5555444 99999
Q ss_pred EEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeC-CCcEEEEeCCCCCCCCCCCCCCcccceEEEe
Q 005506 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (693)
Q Consensus 121 vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~-Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~ 199 (693)
+|++... ......+..|...|..++|+| ++..+++++. |+.+++|++.....
T Consensus 138 ~~~~~~~---------~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 190 (466)
T COG2319 138 LWDLSTP---------GKLIRTLEGHSESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRTGKP----------------- 190 (466)
T ss_pred EEEecCC---------CeEEEEEecCcccEEEEEECC-CCCEEEecCCCCCceEEEEcCCCce-----------------
Confidence 9999851 144677888999999999999 4457777775 99999999987331
Q ss_pred ccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCc
Q 005506 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (693)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (693)
+.....|...+.+++|+|++..++++++.|+.|++||......... .+ .+|..
T Consensus 191 --------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~------------~~-------~~~~~ 243 (466)
T COG2319 191 --------LSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS------------TL-------SGHSD 243 (466)
T ss_pred --------EEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEee------------ec-------CCCCc
Confidence 1111226678999999987433555559999999998774322110 01 22333
Q ss_pred cceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEe-ecCCCceeEEecc
Q 005506 280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRY-TVGDASKIMSFTP 331 (693)
Q Consensus 280 ~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~-~~~~~~~~~~~~p 331 (693)
. + ...|+|++..+++++.|+.+++|++.......... .+......+.+.|
T Consensus 244 ~-~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 294 (466)
T COG2319 244 S-V-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP 294 (466)
T ss_pred c-e-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC
Confidence 1 2 22899999888999999999999999865412222 3334455556666
No 203
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=1e-12 Score=138.65 Aligned_cols=193 Identities=20% Similarity=0.314 Sum_probs=140.5
Q ss_pred cCcccccchh------hhcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC---------cEEEEecc
Q 005506 26 VNHSLQMHSS------LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR---------KLLHSIET 90 (693)
Q Consensus 26 ~~~~l~~~~~------~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~---------~~~~~l~~ 90 (693)
+++.+.+|.. --..++++.+|++|.++|.|+++.+++..+.+|+-||+|+.|++... ..+.....
T Consensus 314 ed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~ 393 (577)
T KOG0642|consen 314 EDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLL 393 (577)
T ss_pred cccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhcccee
Confidence 4455555433 34567889999999999999999999999999999999999965421 12333337
Q ss_pred CCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCC------------CCCCCCC-------------------
Q 005506 91 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL------------DDNAITP------------------- 139 (693)
Q Consensus 91 ~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~------------~~~~~~~------------------- 139 (693)
||.+.|+.+++++.. ..|++++.||+|+.|+........+ +....++
T Consensus 394 Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev 471 (577)
T KOG0642|consen 394 GHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEV 471 (577)
T ss_pred ccccceeeeeecccc--cceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhh
Confidence 999999999999984 6799999999999999875433111 0000000
Q ss_pred ---ceeecc-------CCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeec
Q 005506 140 ---SALYQC-------HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA 209 (693)
Q Consensus 140 ---~~~~~~-------h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~ 209 (693)
+..+.. -...+..+.++|.. .+.+++.+|+.|+++|..++.. +.
T Consensus 472 ~s~~~~~~s~~~~~~~~~~~in~vVs~~~~-~~~~~~hed~~Ir~~dn~~~~~-------------------------l~ 525 (577)
T KOG0642|consen 472 VSDLLIFESSASPGPRRYPQINKVVSHPTA-DITFTAHEDRSIRFFDNKTGKI-------------------------LH 525 (577)
T ss_pred hhheeeccccCCCcccccCccceEEecCCC-CeeEecccCCceeccccccccc-------------------------ch
Confidence 000100 11345667777844 6777999999999999888763 23
Q ss_pred CCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCC
Q 005506 210 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (693)
Q Consensus 210 ~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~ 247 (693)
....|...++++++.|. +-+|++|+.|+.|++|.+..
T Consensus 526 s~~a~~~svtslai~~n-g~~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 526 SMVAHKDSVTSLAIDPN-GPYLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred heeeccceecceeecCC-CceEEeecCCceeehhhccc
Confidence 33456788999999997 67999999999999998864
No 204
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=7.3e-14 Score=133.43 Aligned_cols=101 Identities=21% Similarity=0.173 Sum_probs=94.8
Q ss_pred cchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCC
Q 005506 360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSS 439 (693)
Q Consensus 360 ~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~ 439 (693)
...+++++++||.+|...+ |..||.+|++||...|.. +.+|.|||.||||++. +..+..||.+||+|+|+
T Consensus 7 s~~a~qlkE~gnk~f~~k~-y~~ai~~y~raI~~nP~~------~~Y~tnralchlk~~~---~~~v~~dcrralql~~N 76 (284)
T KOG4642|consen 7 SESAEQLKEQGNKCFIPKR-YDDAIDCYSRAICINPTV------ASYYTNRALCHLKLKH---WEPVEEDCRRALQLDPN 76 (284)
T ss_pred chHHHHHHhccccccchhh-hchHHHHHHHHHhcCCCc------chhhhhHHHHHHHhhh---hhhhhhhHHHHHhcChH
Confidence 3568899999999999999 999999999999999887 7899999999999766 99999999999999999
Q ss_pred CcchhhhHHHHHHHhccHHHHHHHHHHHccc
Q 005506 440 SFRAHLYMSEALEQLCKYKEALDFAIAAQCL 470 (693)
Q Consensus 440 ~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~ 470 (693)
.+||||-++++++..+.|.+|+..+++++.+
T Consensus 77 ~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 77 LVKAHYFLGQWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 9999999999999999999999999999644
No 205
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=2.7e-13 Score=129.72 Aligned_cols=129 Identities=16% Similarity=0.114 Sum_probs=105.5
Q ss_pred CcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCC-----C-CC------cchhhhhhhHHHHHHhccccCcHHHH
Q 005506 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSG-----I-GP------MLRHECLCIRAALLLKRKWKNDAQMA 426 (693)
Q Consensus 359 ~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~-----~-~~------~~~~~~~~NRA~~~lk~~~~~d~~~A 426 (693)
....+..+.++||+.|+.|+ |.+|+.+|.+||....+. + .+ ...-.||.|-+.|+|+ .||||++
T Consensus 174 Kmkav~~l~q~GN~lfk~~~-ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~---~~e~yev 249 (329)
T KOG0545|consen 174 KMKAVPVLHQEGNRLFKLGR-YKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLK---KEEYYEV 249 (329)
T ss_pred hhhhhHHHHHhhhhhhhhcc-HHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhh---HHHHHHH
Confidence 44456778999999999999 999999999998643211 1 11 2234589999999999 4679999
Q ss_pred HHhHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchh-HHHHHHHHHHHHHH
Q 005506 427 IRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM-AEKVENIKKHIAAA 491 (693)
Q Consensus 427 l~Dc~~Al~l~p~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~-~~~~~~l~~~i~~~ 491 (693)
+..|...|..+|.++|||||||+|+.+.=+..||.+||+++++++|.-+.+ +.+++.+..++++.
T Consensus 250 leh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~ek 315 (329)
T KOG0545|consen 250 LEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAEK 315 (329)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999986433 55566666655443
No 206
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=1e-11 Score=118.42 Aligned_cols=209 Identities=18% Similarity=0.245 Sum_probs=143.8
Q ss_pred eEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcE------EEEe-ccCC-----CcceEEEEEeeCCCCCEE
Q 005506 43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL------LHSI-ETGH-----SANVFCTKFVPETSDELV 110 (693)
Q Consensus 43 ~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~------~~~l-~~~h-----~~~I~sv~f~p~~~~~~l 110 (693)
+-..++|.++|+.++|. ..+|++|++ |.|+=|....... +..+ ..-| .-.|.++-..|.. +-+
T Consensus 55 iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e--nSi 129 (325)
T KOG0649|consen 55 IVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE--NSI 129 (325)
T ss_pred eeeccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC--CcE
Confidence 34458999999999998 457778765 9999998764321 1111 1122 2468899999885 445
Q ss_pred EEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCC
Q 005506 111 VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSH 190 (693)
Q Consensus 111 ~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~ 190 (693)
++++.|+.++.||++.+ +....+.+|++.|.++.--..++. ++||++||++|+||+++.+.+..+....
T Consensus 130 ~~AgGD~~~y~~dlE~G----------~i~r~~rGHtDYvH~vv~R~~~~q-ilsG~EDGtvRvWd~kt~k~v~~ie~yk 198 (325)
T KOG0649|consen 130 LFAGGDGVIYQVDLEDG----------RIQREYRGHTDYVHSVVGRNANGQ-ILSGAEDGTVRVWDTKTQKHVSMIEPYK 198 (325)
T ss_pred EEecCCeEEEEEEecCC----------EEEEEEcCCcceeeeeeecccCcc-eeecCCCccEEEEeccccceeEEecccc
Confidence 55568999999999975 557899999999999988543554 5599999999999999987542221110
Q ss_pred cccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccC
Q 005506 191 QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM 270 (693)
Q Consensus 191 ~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~ 270 (693)
. .. ...|.....|-+++.+.+ +|++|+ ...+.+|.+|..++...+..
T Consensus 199 ------------~--~~-~lRp~~g~wigala~~ed---WlvCGg-Gp~lslwhLrsse~t~vfpi-------------- 245 (325)
T KOG0649|consen 199 ------------N--PN-LLRPDWGKWIGALAVNED---WLVCGG-GPKLSLWHLRSSESTCVFPI-------------- 245 (325)
T ss_pred ------------C--hh-hcCcccCceeEEEeccCc---eEEecC-CCceeEEeccCCCceEEEec--------------
Confidence 0 00 111223456788888764 676664 57899999998754332211
Q ss_pred ccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCC
Q 005506 271 HLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 271 ~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~ 310 (693)
..+|..+.|..+ .+++++...+|.-|.+..
T Consensus 246 --------pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 246 --------PARVHLVDFVDD--CVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred --------ccceeEeeeecc--eEEEeccccceeeeeecc
Confidence 114677888554 577888888999998876
No 207
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.42 E-value=3.1e-12 Score=136.53 Aligned_cols=212 Identities=18% Similarity=0.301 Sum_probs=149.5
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCC
Q 005506 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG 131 (693)
Q Consensus 52 ~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~ 131 (693)
+|+.++|-|||+.|+.+..| .+.|||+..|..+.++ .+|.+.|.||+|+.+ |..|++|+.|..|.+|....
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtL-KgHKDtVycVAys~d--GkrFASG~aDK~VI~W~~kl----- 84 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPL-KGHKDTVYCVAYAKD--GKRFASGSADKSVIIWTSKL----- 84 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCccccccc-ccccceEEEEEEccC--CceeccCCCceeEEEecccc-----
Confidence 99999999999988887655 7999999999999999 799999999999998 79999999999999998874
Q ss_pred CCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCC
Q 005506 132 LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP 211 (693)
Q Consensus 132 ~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 211 (693)
+-+..+ .|.+.|.|+.|+| -.+.++|++-. ..-+|........ .
T Consensus 85 ------EG~LkY-SH~D~IQCMsFNP-~~h~LasCsLs-dFglWS~~qK~V~---------------------------K 128 (1081)
T KOG1538|consen 85 ------EGILKY-SHNDAIQCMSFNP-ITHQLASCSLS-DFGLWSPEQKSVS---------------------------K 128 (1081)
T ss_pred ------cceeee-ccCCeeeEeecCc-hHHHhhhcchh-hccccChhhhhHH---------------------------h
Confidence 223344 4999999999999 66788888753 3457876543211 0
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCccc--ccccCc------------------
Q 005506 212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN--YFCPMH------------------ 271 (693)
Q Consensus 212 ~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~--~~~~~~------------------ 271 (693)
......+.+++|..+ |.+|+.|-.+|+|.|-+.. +++-..++.+..+...+. .++|..
T Consensus 129 ~kss~R~~~CsWtnD-GqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLS 206 (1081)
T KOG1538|consen 129 HKSSSRIICCSWTND-GQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLS 206 (1081)
T ss_pred hhhheeEEEeeecCC-CcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeE
Confidence 012346789999997 7999999999999987543 222222222111110000 011110
Q ss_pred ---ccc-----CCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCC
Q 005506 272 ---LSE-----HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 272 ---~~~-----~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~ 310 (693)
+.+ ...-+....++.+-++|.+++.|+.|+.+.+|--..
T Consensus 207 Fy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G 253 (1081)
T KOG1538|consen 207 FYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDG 253 (1081)
T ss_pred EEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeecC
Confidence 000 001112345677778999999999999999986544
No 208
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.41 E-value=4.4e-11 Score=132.35 Aligned_cols=238 Identities=18% Similarity=0.179 Sum_probs=152.1
Q ss_pred CcEEEEECCCC-cEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCe
Q 005506 72 THINVWSYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRV 150 (693)
Q Consensus 72 g~I~IWd~~~~-~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V 150 (693)
+.+.||++... .+...+ .-...|++++|+|.. ..+++.|..+|.|.+||++....... .........|..+|
T Consensus 222 ~~~~vW~~~~p~~Pe~~~--~~~s~v~~~~f~p~~-p~ll~gG~y~GqV~lWD~~~~~~~~~----s~ls~~~~sh~~~v 294 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVL--ESPSEVTCLKFCPFD-PNLLAGGCYNGQVVLWDLRKGSDTPP----SGLSALEVSHSEPV 294 (555)
T ss_pred ceEEEEecCCCCCceEEE--ecCCceeEEEeccCC-cceEEeeccCceEEEEEccCCCCCCC----cccccccccCCcCe
Confidence 46899999866 333333 456789999999996 78999999999999999997543211 12223345689999
Q ss_pred EEEEEecCCC-cEEEEEeCCCcEEEEeCCCCCCCCCCCCC----------------------CcccceEEEeccCCcee-
Q 005506 151 KKLAVEVGNP-HVVWSASEDGTLRQHDFRQGSSCPPAGSS----------------------HQECRNILLDLRCGAKR- 206 (693)
Q Consensus 151 ~~la~sp~~~-~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~----------------------~~~~~~~l~~~~~~~~~- 206 (693)
..+.|..... .-|++++.||.|..|+++.-..+...... .......++....|...
T Consensus 295 ~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~ 374 (555)
T KOG1587|consen 295 TAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYK 374 (555)
T ss_pred EEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEE
Confidence 9999976222 34779999999999998865532100000 00111222222222211
Q ss_pred ---------------eecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecC-CCCCCcccccCCCCCCcccccccC
Q 005506 207 ---------------SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR-MLPPLTSCQKRMSPPPCVNYFCPM 270 (693)
Q Consensus 207 ---------------~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r-~~~~~~~~~~~~~~~~~~~~~~~~ 270 (693)
.+..+..|...|+++.++|-....+++++ |.+|+||... ...|+..+
T Consensus 375 ~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~---------------- 437 (555)
T KOG1587|consen 375 GCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSL---------------- 437 (555)
T ss_pred EeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhh----------------
Confidence 12344567789999999999777777776 9999999877 44333222
Q ss_pred ccccCCCCccceEEEEEcCCCCEE-EEEecCCcEEEEECCCCCcceEEeec--CCCceeEEeccCCCcccc
Q 005506 271 HLSEHGRSSLHLTHVTFSPNGEEV-LLSYSGEHVYLMDVNHAGGRAMRYTV--GDASKIMSFTPTLNGLEL 338 (693)
Q Consensus 271 ~~~~~~~~~~~V~~v~fspdg~~L-~sgs~Dg~V~lwdl~~~~~~~~~~~~--~~~~~~~~~~p~~~g~~~ 338 (693)
..+.. .|++++|||.-.-+ +++..||.|.+||+......++.... ........|++...-++.
T Consensus 438 ----~~~~~-~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lav 503 (555)
T KOG1587|consen 438 ----DSSPD-YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAV 503 (555)
T ss_pred ----hhccc-eeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEE
Confidence 11222 49999999988655 55666999999999886544443321 223333444544333333
No 209
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.41 E-value=1.2e-12 Score=140.40 Aligned_cols=119 Identities=18% Similarity=0.201 Sum_probs=109.9
Q ss_pred hhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcc
Q 005506 363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR 442 (693)
Q Consensus 363 a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~K 442 (693)
+.+++.+|+.+|..++ |..|+.+|.+||...|.. +.+|.|||.+|+++ |++.+|+.++.+||+++|++.+
T Consensus 2 ~~~l~~~a~~a~~~~~-~~~Ai~~~~~Al~~~P~~------~~a~~~~a~~~~~~---g~~~eAl~~~~~Al~l~P~~~~ 71 (356)
T PLN03088 2 AKDLEDKAKEAFVDDD-FALAVDLYTQAIDLDPNN------AELYADRAQANIKL---GNFTEAVADANKAIELDPSLAK 71 (356)
T ss_pred cHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCcCCHH
Confidence 3467889999999999 999999999999999887 78999999999996 4599999999999999999999
Q ss_pred hhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHHHHHHHHHH
Q 005506 443 AHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAA 491 (693)
Q Consensus 443 A~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l~~~i~~~ 491 (693)
||+++|.+|+.+|+|++|+.+|+++++++|++..+...+..+...+++.
T Consensus 72 a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~ 120 (356)
T PLN03088 72 AYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEE 120 (356)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999888888888877543
No 210
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.41 E-value=7.1e-12 Score=124.13 Aligned_cols=204 Identities=16% Similarity=0.184 Sum_probs=150.0
Q ss_pred CcCcccccchhhhcc-cceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEEC-CCC--cEEEEeccCCCcceEEEE
Q 005506 25 DVNHSLQMHSSLVRR-LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSY-SSR--KLLHSIETGHSANVFCTK 100 (693)
Q Consensus 25 ~~~~~l~~~~~~i~~-l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~-~~~--~~~~~l~~~h~~~I~sv~ 100 (693)
...+.+++++..-.. .++.++|..|...|++|+|+|..+.|++|+.|..-.||.. ..+ ++...| ..+...+++|.
T Consensus 29 ~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvL-lRiNrAAt~V~ 107 (361)
T KOG1523|consen 29 PNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVL-LRINRAATCVK 107 (361)
T ss_pred cCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeE-EEeccceeeEe
Confidence 445678888887777 8999999999999999999999999999999999999998 333 344455 47888999999
Q ss_pred EeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 005506 101 FVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180 (693)
Q Consensus 101 f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~ 180 (693)
|+|. ++.||+|+.-..|.||-++...- -+-..++-+.+.+.|+++.|+| ++-++++|+.|+.+|+|..--.
T Consensus 108 WsP~--enkFAVgSgar~isVcy~E~ENd------WWVsKhikkPirStv~sldWhp-nnVLlaaGs~D~k~rVfSayIK 178 (361)
T KOG1523|consen 108 WSPK--ENKFAVGSGARLISVCYYEQEND------WWVSKHIKKPIRSTVTSLDWHP-NNVLLAAGSTDGKCRVFSAYIK 178 (361)
T ss_pred ecCc--CceEEeccCccEEEEEEEecccc------eehhhhhCCccccceeeeeccC-CcceecccccCcceeEEEEeee
Confidence 9999 68999999999999998874210 0011223345678899999999 7789999999999999964211
Q ss_pred --CCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCC
Q 005506 181 --SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML 248 (693)
Q Consensus 181 --~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~ 248 (693)
...+. ..-|+.+..-...+.........+..+.|+|+ +..|+-.+.|..|.+-|....
T Consensus 179 ~Vdekpa---------p~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s-G~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 179 GVDEKPA---------PTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS-GNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred ccccCCC---------CCCCccCCcHHHHHHhhccCCCceeeeEeCCC-CCEeeEecCCCceEEeecCCC
Confidence 00000 00111111001111222244568999999997 789999999999999887654
No 211
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=4.3e-12 Score=134.46 Aligned_cols=214 Identities=14% Similarity=0.176 Sum_probs=154.8
Q ss_pred EeccCCCcEEEEEECCCCCEEEEEeCC---CcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 005506 45 ELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 121 (693)
Q Consensus 45 ~l~gH~~~V~~l~~s~~g~~LaSgs~D---g~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~v 121 (693)
..-.|...|+.+.|+..|.+|+|...+ ..|.|.++...+...-| ..-.+.|.++.|+|.. .+|+.++ -..|+|
T Consensus 516 ~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF-~kskG~vq~v~FHPs~--p~lfVaT-q~~vRi 591 (733)
T KOG0650|consen 516 IVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPF-RKSKGLVQRVKFHPSK--PYLFVAT-QRSVRI 591 (733)
T ss_pred EEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCch-hhcCCceeEEEecCCC--ceEEEEe-ccceEE
Confidence 334589999999999999999998653 56899999877666555 3456789999999995 5555554 478999
Q ss_pred EEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEecc
Q 005506 122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR 201 (693)
Q Consensus 122 wdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~ 201 (693)
||+... ..++.+......|..++++|.+ .-|+.|+.|+.+..||+.-...+
T Consensus 592 YdL~kq----------elvKkL~tg~kwiS~msihp~G-Dnli~gs~d~k~~WfDldlsskP------------------ 642 (733)
T KOG0650|consen 592 YDLSKQ----------ELVKKLLTGSKWISSMSIHPNG-DNLILGSYDKKMCWFDLDLSSKP------------------ 642 (733)
T ss_pred EehhHH----------HHHHHHhcCCeeeeeeeecCCC-CeEEEecCCCeeEEEEcccCcch------------------
Confidence 999853 4466666667889999999944 55558999999999999765432
Q ss_pred CCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccc
Q 005506 202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH 281 (693)
Q Consensus 202 ~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (693)
.....-|...+++++|++. -.+|++|+.||.+.||.-+-...+-.- +. ...++ ..++|... ....
T Consensus 643 ------yk~lr~H~~avr~Va~H~r-yPLfas~sdDgtv~Vfhg~VY~Dl~qn--pl--iVPlK-~L~gH~~~---~~~g 707 (733)
T KOG0650|consen 643 ------YKTLRLHEKAVRSVAFHKR-YPLFASGSDDGTVIVFHGMVYNDLLQN--PL--IVPLK-RLRGHEKT---NDLG 707 (733)
T ss_pred ------hHHhhhhhhhhhhhhhccc-cceeeeecCCCcEEEEeeeeehhhhcC--Cc--eEeee-eccCceee---cccc
Confidence 2233356778999999996 579999999999999865422211000 00 00011 11122111 2335
Q ss_pred eEEEEEcCCCCEEEEEecCCcEEEE
Q 005506 282 LTHVTFSPNGEEVLLSYSGEHVYLM 306 (693)
Q Consensus 282 V~~v~fspdg~~L~sgs~Dg~V~lw 306 (693)
|..+.|+|...+|++++.||+|++|
T Consensus 708 VLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 708 VLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eEeecccCCCceEEecCCCceEEee
Confidence 8899999999999999999999998
No 212
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.39 E-value=1.8e-10 Score=122.86 Aligned_cols=267 Identities=8% Similarity=0.083 Sum_probs=158.2
Q ss_pred cccccchhh-hcccceeEEeccCCCcEEEEEECCCCCEEEEEe-CCCcEEEEECC-CCcE--EEEeccCCCcceEEEEEe
Q 005506 28 HSLQMHSSL-VRRLSQERELEGHQGCVNAISWNSKGSLLISGS-DDTHINVWSYS-SRKL--LHSIETGHSANVFCTKFV 102 (693)
Q Consensus 28 ~~l~~~~~~-i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs-~Dg~I~IWd~~-~~~~--~~~l~~~h~~~I~sv~f~ 102 (693)
+.+.+++.. -..++++.++. +.+....|.++|++++|++++ .++.|.+|++. +++. +..+ ...+....+.|+
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~--~~~~~p~~i~~~ 88 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES--PLPGSPTHISTD 88 (330)
T ss_pred CCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee--cCCCCceEEEEC
Confidence 445555432 13445666665 346678899999999887664 57889999986 3332 2223 233456789999
Q ss_pred eCCCCCEEEEEe-CCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCC
Q 005506 103 PETSDELVVSGA-GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS 181 (693)
Q Consensus 103 p~~~~~~l~sgs-~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~ 181 (693)
|+ +++|++++ .++.|.+|++... +... ..+..+. +...+..++++|++..++++...++.|.+||+.+..
T Consensus 89 ~~--g~~l~v~~~~~~~v~v~~~~~~-g~~~-----~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g 159 (330)
T PRK11028 89 HQ--GRFLFSASYNANCVSVSPLDKD-GIPV-----APIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG 159 (330)
T ss_pred CC--CCEEEEEEcCCCeEEEEEECCC-CCCC-----Cceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC
Confidence 98 57666665 4899999999742 1110 1222222 234567789999665566677778999999997632
Q ss_pred CCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeC-CCcEEEEecCCCC-CCcccccCCC
Q 005506 182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-DAFARLYDRRMLP-PLTSCQKRMS 259 (693)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~-Dg~IriwD~r~~~-~~~~~~~~~~ 259 (693)
.+.... ...... .. ......++|+|+ +++++++.. ++.|.+||+.... .+....
T Consensus 160 ~l~~~~-------~~~~~~----------~~--g~~p~~~~~~pd-g~~lyv~~~~~~~v~v~~~~~~~~~~~~~~---- 215 (330)
T PRK11028 160 HLVAQE-------PAEVTT----------VE--GAGPRHMVFHPN-QQYAYCVNELNSSVDVWQLKDPHGEIECVQ---- 215 (330)
T ss_pred cccccC-------CCceec----------CC--CCCCceEEECCC-CCEEEEEecCCCEEEEEEEeCCCCCEEEEE----
Confidence 110000 000000 00 123457899997 566666654 9999999997421 111000
Q ss_pred CCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEec-CCcEEEEECCCCCcceEEe---ecCCCceeEEeccCCCc
Q 005506 260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGRAMRY---TVGDASKIMSFTPTLNG 335 (693)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~-Dg~V~lwdl~~~~~~~~~~---~~~~~~~~~~~~p~~~g 335 (693)
.+..+ |.... .. .+...+.|+|+|++|+++.. ++.|.+|++.......... ..+..+..+.++|+.+-
T Consensus 216 ---~~~~~-p~~~~---~~-~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~ 287 (330)
T PRK11028 216 ---TLDMM-PADFS---DT-RWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKY 287 (330)
T ss_pred ---EEecC-CCcCC---CC-ccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCE
Confidence 00000 11100 01 13457999999999999865 7899999997643222221 22334567778877555
Q ss_pred ccc
Q 005506 336 LEL 338 (693)
Q Consensus 336 ~~~ 338 (693)
+..
T Consensus 288 l~v 290 (330)
T PRK11028 288 LIA 290 (330)
T ss_pred EEE
Confidence 443
No 213
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.39 E-value=5.5e-13 Score=145.62 Aligned_cols=247 Identities=19% Similarity=0.319 Sum_probs=180.7
Q ss_pred CcccccchhhhcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCC
Q 005506 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS 106 (693)
Q Consensus 27 ~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~ 106 (693)
+..+++|+ .....+...++||.+.|+.++.+.+..++|++|.|..|++|.+.++.++..+ .+|++.|++++|+|-.
T Consensus 211 d~lvKiwS--~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvL-rghtgavtaiafsP~~- 286 (1113)
T KOG0644|consen 211 DRLVKIWS--METARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVL-RGHTGAVTAIAFSPRA- 286 (1113)
T ss_pred cceeeeee--ccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHH-hccccceeeeccCccc-
Confidence 45677887 7778889999999999999999999999999999999999999999999888 7999999999999972
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCC---
Q 005506 107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC--- 183 (693)
Q Consensus 107 ~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~--- 183 (693)
+.+.||++++||.+-..... ...|.. +. ...-+-++.|.. ...-++|++.|+.-..|.+.....-
T Consensus 287 -----sss~dgt~~~wd~r~~~~~y----~prp~~-~~-~~~~~~s~~~~~-~~~~f~Tgs~d~ea~n~e~~~l~~~~~~ 354 (1113)
T KOG0644|consen 287 -----SSSDDGTCRIWDARLEPRIY----VPRPLK-FT-EKDLVDSILFEN-NGDRFLTGSRDGEARNHEFEQLAWRSNL 354 (1113)
T ss_pred -----cCCCCCceEecccccccccc----CCCCCC-cc-cccceeeeeccc-cccccccccCCcccccchhhHhhhhccc
Confidence 77889999999998211000 001111 11 224566666665 5567889999988877765432100
Q ss_pred -----------CCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCc
Q 005506 184 -----------PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLT 252 (693)
Q Consensus 184 -----------~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~ 252 (693)
.........+....|.+.+|. .+....+|...+..+.++|.++....+++.||...|||+-.+.+++
T Consensus 355 lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~--l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik 432 (1113)
T KOG0644|consen 355 LIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQ--LLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIK 432 (1113)
T ss_pred eEEEeccccccccceeeeeeeEeeeeecccch--hhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcce
Confidence 000111123334445555543 2334456777889999999999999999999999999998876553
Q ss_pred ccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCC
Q 005506 253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~ 312 (693)
.. + .+|. .+...+||++|..++....-|+++|+....+.
T Consensus 433 ~y------------~-------~gh~--kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 433 HY------------F-------IGHG--KLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred ee------------e-------cccc--eeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 22 1 2233 47788999999999999889999999876543
No 214
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=2.3e-10 Score=121.13 Aligned_cols=250 Identities=16% Similarity=0.190 Sum_probs=161.5
Q ss_pred hhhcccceeEEeccCCCcEEEEEECCCCCE-EEEEeCCCcEEEEECCCCcEE--EEec----------------------
Q 005506 35 SLVRRLSQERELEGHQGCVNAISWNSKGSL-LISGSDDTHINVWSYSSRKLL--HSIE---------------------- 89 (693)
Q Consensus 35 ~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~-LaSgs~Dg~I~IWd~~~~~~~--~~l~---------------------- 89 (693)
...++..+++.|. |...-+.|..+|||++ ||||.....|++||+....+. +.+.
T Consensus 37 ~~~~rieLiQdfe-~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~D 115 (703)
T KOG2321|consen 37 DYRQRIELIQDFE-MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQND 115 (703)
T ss_pred HHHHHHHHHHhcC-CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecC
Confidence 3455556666665 8888999999999985 567888999999998753211 0000
Q ss_pred ---cCC-----------CcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEE
Q 005506 90 ---TGH-----------SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV 155 (693)
Q Consensus 90 ---~~h-----------~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~ 155 (693)
.-| ...-.+++++.-+ -.+++. +....|+=+++..+ ..+..+......++++.+
T Consensus 116 R~IefHak~G~hy~~RIP~~GRDm~y~~~s-cDly~~-gsg~evYRlNLEqG----------rfL~P~~~~~~~lN~v~i 183 (703)
T KOG2321|consen 116 RTIEFHAKYGRHYRTRIPKFGRDMKYHKPS-CDLYLV-GSGSEVYRLNLEQG----------RFLNPFETDSGELNVVSI 183 (703)
T ss_pred ceeeehhhcCeeeeeecCcCCccccccCCC-ccEEEe-ecCcceEEEEcccc----------ccccccccccccceeeee
Confidence 000 1112344444332 133333 34456666777754 345566666688999999
Q ss_pred ecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCC--CCCccceEEEEEcCCCCcEEEE
Q 005506 156 EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP--PKQTLSLKSCDISSTRPHLLLV 233 (693)
Q Consensus 156 sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~--~~~~~~v~sl~~sp~~~~~Lat 233 (693)
++ ...+|++|+.+|.|-.||.|....+..+.. ... +... ......|+++.|+.+ |-.+++
T Consensus 184 n~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~------------~~~----v~s~pg~~~~~svTal~F~d~-gL~~aV 245 (703)
T KOG2321|consen 184 NE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDA------------ASS----VNSHPGGDAAPSVTALKFRDD-GLHVAV 245 (703)
T ss_pred cC-ccceEEecccCceEEEecchhhhhheeeec------------ccc----cCCCccccccCcceEEEecCC-ceeEEe
Confidence 99 557999999999999999998775522111 110 1111 122346999999987 789999
Q ss_pred EeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCC-EEEEEecCCcEEEEECCCCC
Q 005506 234 GGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 234 gs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~-~L~sgs~Dg~V~lwdl~~~~ 312 (693)
|..+|.|.|||+|..+|+..-. ++ ...+|..+.|.+.+. --+++.....++|||-.+++
T Consensus 246 Gts~G~v~iyDLRa~~pl~~kd-------------------h~-~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk 305 (703)
T KOG2321|consen 246 GTSTGSVLIYDLRASKPLLVKD-------------------HG-YELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGK 305 (703)
T ss_pred eccCCcEEEEEcccCCceeecc-------------------cC-CccceeeecccccCCCceEEecchHHhhhcccccCC
Confidence 9999999999999877653221 11 123689999987633 34445556799999999976
Q ss_pred cceEEeecCCCceeEEeccCCCcc
Q 005506 313 GRAMRYTVGDASKIMSFTPTLNGL 336 (693)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~p~~~g~ 336 (693)
..... ......+.+|+.|...-+
T Consensus 306 ~~asi-Ept~~lND~C~~p~sGm~ 328 (703)
T KOG2321|consen 306 PMASI-EPTSDLNDFCFVPGSGMF 328 (703)
T ss_pred ceeec-cccCCcCceeeecCCceE
Confidence 44333 333447777877765443
No 215
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.36 E-value=1.2e-10 Score=117.73 Aligned_cols=195 Identities=11% Similarity=0.138 Sum_probs=139.3
Q ss_pred cEEEEEECCCCCEEEEEeCC--CcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCC
Q 005506 52 CVNAISWNSKGSLLISGSDD--THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (693)
Q Consensus 52 ~V~~l~~s~~g~~LaSgs~D--g~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~ 129 (693)
.|--+-|+ ..++|..+.+ +.+++.++..+..++.+ -...+|.+|+++.+ .|+++-. ..|+|||++..
T Consensus 48 ~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~--~fpt~IL~VrmNr~----RLvV~Le-e~IyIydI~~M-- 116 (391)
T KOG2110|consen 48 SIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTICEI--FFPTSILAVRMNRK----RLVVCLE-ESIYIYDIKDM-- 116 (391)
T ss_pred EEEEeecc--cceeEEEecCCCceEEEEEcccCceEEEE--ecCCceEEEEEccc----eEEEEEc-ccEEEEecccc--
Confidence 34444455 4566666544 34899999888888877 35678999999865 4555544 44999999964
Q ss_pred CCCCCCCCCCceeec---cCCCCeEEEEEecCCCcEEEE-Ee-CCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCc
Q 005506 130 RGLDDNAITPSALYQ---CHTRRVKKLAVEVGNPHVVWS-AS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (693)
Q Consensus 130 ~~~~~~~~~~~~~~~---~h~~~V~~la~sp~~~~~l~S-gs-~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (693)
+.+.++. .+...+..+++++ .+.+++- ++ ..|.|.+||+.+-++.
T Consensus 117 --------klLhTI~t~~~n~~gl~AlS~n~-~n~ylAyp~s~t~GdV~l~d~~nl~~v--------------------- 166 (391)
T KOG2110|consen 117 --------KLLHTIETTPPNPKGLCALSPNN-ANCYLAYPGSTTSGDVVLFDTINLQPV--------------------- 166 (391)
T ss_pred --------eeehhhhccCCCccceEeeccCC-CCceEEecCCCCCceEEEEEcccceee---------------------
Confidence 3344433 3455566666655 3345543 22 3588999998775422
Q ss_pred eeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcE-EEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceE
Q 005506 205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA-RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 283 (693)
Q Consensus 205 ~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~I-riwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 283 (693)
.....|...+.+++|+|+ |.+|||++..|+| |+|.+.+++.+..++.... ...|.
T Consensus 167 ----~~I~aH~~~lAalafs~~-G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-------------------~~~Iy 222 (391)
T KOG2110|consen 167 ----NTINAHKGPLAALAFSPD-GTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-------------------PVSIY 222 (391)
T ss_pred ----eEEEecCCceeEEEECCC-CCEEEEeccCceEEEEEEcCCccEeeeeeCCce-------------------eeEEE
Confidence 223367889999999997 7999999998875 8999998876665543221 22599
Q ss_pred EEEEcCCCCEEEEEecCCcEEEEECCCC
Q 005506 284 HVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (693)
Q Consensus 284 ~v~fspdg~~L~sgs~Dg~V~lwdl~~~ 311 (693)
+++|+|++++|.+.+..++|++|.+...
T Consensus 223 SL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 223 SLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred EEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 9999999999999999999999999883
No 216
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=1.2e-10 Score=129.13 Aligned_cols=237 Identities=19% Similarity=0.254 Sum_probs=177.5
Q ss_pred cccccchhhhcccceeEEeccCCCcEEEEEECCCC---CEEEEEeCCCcEEEEECCCCcEEEEec---------------
Q 005506 28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKG---SLLISGSDDTHINVWSYSSRKLLHSIE--------------- 89 (693)
Q Consensus 28 ~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g---~~LaSgs~Dg~I~IWd~~~~~~~~~l~--------------- 89 (693)
..+++++ ..+..+++.|.+|..++..+.+.|.. .++.+++.||.|++||...+..++++.
T Consensus 37 ~~V~VyS--~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a 114 (792)
T KOG1963|consen 37 NFVKVYS--TATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQA 114 (792)
T ss_pred CEEEEEe--cchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHh
Confidence 5566654 45667788999999999999999854 478899999999999987654433321
Q ss_pred --------------------------------------------------------------------------------
Q 005506 90 -------------------------------------------------------------------------------- 89 (693)
Q Consensus 90 -------------------------------------------------------------------------------- 89 (693)
T Consensus 115 ~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~ 194 (792)
T KOG1963|consen 115 DISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKH 194 (792)
T ss_pred CccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEeccccee
Confidence
Q ss_pred -------cCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcE
Q 005506 90 -------TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162 (693)
Q Consensus 90 -------~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~ 162 (693)
..|.-++++++++|+ ++++++|..||.|.+|.--..+. .......+.-|...|.+++|++ ++.+
T Consensus 195 ~~~~~~~~~Htf~~t~~~~spn--~~~~Aa~d~dGrI~vw~d~~~~~------~~~t~t~lHWH~~~V~~L~fS~-~G~~ 265 (792)
T KOG1963|consen 195 TSSRDITVHHTFNITCVALSPN--ERYLAAGDSDGRILVWRDFGSSD------DSETCTLLHWHHDEVNSLSFSS-DGAY 265 (792)
T ss_pred eccchhhhhhcccceeEEeccc--cceEEEeccCCcEEEEecccccc------ccccceEEEecccccceeEEec-CCce
Confidence 246677899999999 69999999999999996543111 1144667788999999999999 5677
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEE
Q 005506 163 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARL 242 (693)
Q Consensus 163 l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~Iri 242 (693)
|.|||..|.+.+|.+.++++. ..|.-..+|..+.++|+ +.+.++...|..|.+
T Consensus 266 LlSGG~E~VLv~Wq~~T~~kq--------------------------fLPRLgs~I~~i~vS~d-s~~~sl~~~DNqI~l 318 (792)
T KOG1963|consen 266 LLSGGREGVLVLWQLETGKKQ--------------------------FLPRLGSPILHIVVSPD-SDLYSLVLEDNQIHL 318 (792)
T ss_pred EeecccceEEEEEeecCCCcc--------------------------cccccCCeeEEEEEcCC-CCeEEEEecCceEEE
Confidence 789999999999999887621 12233467899999997 788889999999999
Q ss_pred EecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCC
Q 005506 243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 243 wD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~ 312 (693)
....++....++.....+.+.. ..+..+ -.+.+.++|--+.++..+..|+|.+||+.+..
T Consensus 319 i~~~dl~~k~tIsgi~~~~~~~---------k~~~~~-l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~ 378 (792)
T KOG1963|consen 319 IKASDLEIKSTISGIKPPTPST---------KTRPQS-LTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDS 378 (792)
T ss_pred EeccchhhhhhccCccCCCccc---------cccccc-cceeEEEcCCCCceeecCCCceEEEEeccccc
Confidence 9887766554443322221100 011122 36789999977788889999999999998854
No 217
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=1.5e-10 Score=116.41 Aligned_cols=203 Identities=17% Similarity=0.239 Sum_probs=140.3
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCC-
Q 005506 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS- 128 (693)
Q Consensus 50 ~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~- 128 (693)
+-++.-++|++.-..+|++..|-.|+||+-.. ++...++..-..+|+|++|-|.+ ...|+.|+.. -|.+|......
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPls-aselavgCr~-gIciW~~s~tln 174 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLS-ASELAVGCRA-GICIWSDSRTLN 174 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCC-cceeeeeecc-eeEEEEcCcccc
Confidence 45788999999878899999999999999765 66677766667899999999997 6788888764 58999876421
Q ss_pred -CCCCCCCCCCC--ceeeccCCCCeEEEEEecCCCcEEEEEeC-CCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCc
Q 005506 129 -GRGLDDNAITP--SALYQCHTRRVKKLAVEVGNPHVVWSASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (693)
Q Consensus 129 -~~~~~~~~~~~--~~~~~~h~~~V~~la~sp~~~~~l~Sgs~-Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (693)
.+........+ +....+| .+|++++|.+ ++..+++++. |..|++||..++...+..
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~pL~------------------ 234 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKIPLI------------------ 234 (445)
T ss_pred cccccccccccchhheeCCCC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCCccccc------------------
Confidence 11111111122 2233345 6899999999 4566667664 678999999887643211
Q ss_pred eeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEE
Q 005506 205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH 284 (693)
Q Consensus 205 ~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 284 (693)
+.....++-+.|||+ +.+|.++.-|+..++|.....- .+.... +. .+ .|..
T Consensus 235 -------~~glgg~slLkwSPd-gd~lfaAt~davfrlw~e~q~w------------t~erw~----lg----sg-rvqt 285 (445)
T KOG2139|consen 235 -------PKGLGGFSLLKWSPD-GDVLFAATCDAVFRLWQENQSW------------TKERWI----LG----SG-RVQT 285 (445)
T ss_pred -------ccCCCceeeEEEcCC-CCEEEEecccceeeeehhcccc------------eeccee----cc----CC-ceee
Confidence 123456778999998 6889999999999999654321 011111 10 11 5899
Q ss_pred EEEcCCCCEEEEEec-CCcEE
Q 005506 285 VTFSPNGEEVLLSYS-GEHVY 304 (693)
Q Consensus 285 v~fspdg~~L~sgs~-Dg~V~ 304 (693)
.+|+|+|++|+-++. .-.||
T Consensus 286 acWspcGsfLLf~~sgsp~ly 306 (445)
T KOG2139|consen 286 ACWSPCGSFLLFACSGSPRLY 306 (445)
T ss_pred eeecCCCCEEEEEEcCCceEE
Confidence 999999998775544 44444
No 218
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.30 E-value=5.8e-12 Score=130.03 Aligned_cols=215 Identities=15% Similarity=0.171 Sum_probs=164.2
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCC
Q 005506 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 130 (693)
Q Consensus 51 ~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~ 130 (693)
-.-..+.++.+|..|+.|+.-|.|-.+|+.++++...+. -...|.++.|..+ .++||+ +....++|||-.-
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~--v~Etv~Dv~~LHn--eq~~AV-AQK~y~yvYD~~G---- 200 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN--VMETVRDVTFLHN--EQFFAV-AQKKYVYVYDNNG---- 200 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeee--hhhhhhhhhhhcc--hHHHHh-hhhceEEEecCCC----
Confidence 345678999999999999999999999999999888872 4567999999987 456655 4678899999763
Q ss_pred CCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecC
Q 005506 131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD 210 (693)
Q Consensus 131 ~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~ 210 (693)
..++.+.. ..+|..+.|.| --.+|++++..|.++--|+.+++.+..
T Consensus 201 -------tElHClk~-~~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~------------------------- 246 (545)
T KOG1272|consen 201 -------TELHCLKR-HIRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVAS------------------------- 246 (545)
T ss_pred -------cEEeehhh-cCchhhhcccc-hhheeeecccCCceEEEeechhhhhHH-------------------------
Confidence 22444443 46799999999 668999999999999999998874311
Q ss_pred CCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCC
Q 005506 211 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN 290 (693)
Q Consensus 211 ~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspd 290 (693)
.......+..+.-+|. ...+-+|...|+|.+|...+..|+..+ ..|.+ +|.+|++.++
T Consensus 247 ~~t~~G~~~vm~qNP~-NaVih~GhsnGtVSlWSP~skePLvKi--------------------LcH~g-~V~siAv~~~ 304 (545)
T KOG1272|consen 247 IRTGAGRTDVMKQNPY-NAVIHLGHSNGTVSLWSPNSKEPLVKI--------------------LCHRG-PVSSIAVDRG 304 (545)
T ss_pred HHccCCccchhhcCCc-cceEEEcCCCceEEecCCCCcchHHHH--------------------HhcCC-CcceEEECCC
Confidence 1122345667788897 468889999999999999887665433 12444 6999999999
Q ss_pred CCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEecc
Q 005506 291 GEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP 331 (693)
Q Consensus 291 g~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p 331 (693)
|+|++|++.|..|+|||+++-.++..... ..+...++++.
T Consensus 305 G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sq 344 (545)
T KOG1272|consen 305 GRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQ 344 (545)
T ss_pred CcEEeecccccceeEeeeccccccceeec-CCCcccccccc
Confidence 99999999999999999999665544444 34444444443
No 219
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=4.3e-11 Score=122.87 Aligned_cols=187 Identities=15% Similarity=0.141 Sum_probs=129.6
Q ss_pred EEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe
Q 005506 97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD 176 (693)
Q Consensus 97 ~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwD 176 (693)
.+++|+++ |..|++|+.||++|||++... .++.....|...|.+|.|+| ++++|++.+.| ..++|+
T Consensus 148 k~vaf~~~--gs~latgg~dg~lRv~~~Ps~----------~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~ 213 (398)
T KOG0771|consen 148 KVVAFNGD--GSKLATGGTDGTLRVWEWPSM----------LTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWS 213 (398)
T ss_pred eEEEEcCC--CCEeeeccccceEEEEecCcc----------hhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEE
Confidence 67899988 799999999999999997643 45667778999999999999 77899999999 999999
Q ss_pred CCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCC---C-cEEEEEeCCCcEEEEecCCCCCCc
Q 005506 177 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR---P-HLLLVGGSDAFARLYDRRMLPPLT 252 (693)
Q Consensus 177 lr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~---~-~~Latgs~Dg~IriwD~r~~~~~~ 252 (693)
++++....... +.........|.|+.++ . .+++.-..-+.|+.||+...+.-
T Consensus 214 ~~~g~~~a~~t-----------------------~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~- 269 (398)
T KOG0771|consen 214 VNTGAALARKT-----------------------PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS- 269 (398)
T ss_pred eccCchhhhcC-----------------------CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-
Confidence 99985331111 01122344566676652 1 22233344577788777643211
Q ss_pred ccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEE-eecCCCceeEEecc
Q 005506 253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMR-YTVGDASKIMSFTP 331 (693)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~-~~~~~~~~~~~~~p 331 (693)
..++..... .++. .|++++.+++|++++.|+.||.|-|++..+.+..... ..|...++.+.|+|
T Consensus 270 ---------~~l~~~~~~----~~~~--siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~P 334 (398)
T KOG0771|consen 270 ---------NFLRLRKKI----KRFK--SISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSP 334 (398)
T ss_pred ---------cccchhhhh----hccC--cceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcC
Confidence 001111111 1222 5999999999999999999999999999985433322 23445678889999
Q ss_pred CCCcc
Q 005506 332 TLNGL 336 (693)
Q Consensus 332 ~~~g~ 336 (693)
+....
T Consensus 335 dsr~~ 339 (398)
T KOG0771|consen 335 DSRYL 339 (398)
T ss_pred CcCcc
Confidence 86654
No 220
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=5.3e-10 Score=123.78 Aligned_cols=206 Identities=12% Similarity=0.100 Sum_probs=129.5
Q ss_pred ceeEEeccCCCcEEEEEECCCCCEEEEEeCC---CcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEE-EEEeCC
Q 005506 41 SQERELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGD 116 (693)
Q Consensus 41 ~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~D---g~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l-~sgs~D 116 (693)
...+.+..|...|.+..|+|+|+.|+..+.+ ..|.+||+.+++... + ..+.+...+++|+|+ |+.| ++.+.+
T Consensus 194 ~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l-~~~~g~~~~~~~SpD--G~~l~~~~s~~ 269 (433)
T PRK04922 194 YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-V-ASFRGINGAPSFSPD--GRRLALTLSRD 269 (433)
T ss_pred CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-e-ccCCCCccCceECCC--CCEEEEEEeCC
Confidence 3445566778889999999999999988743 469999998876543 3 234455668899999 5554 555666
Q ss_pred C--cEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCc--EEEEeCCCCCCCCCCCCCCcc
Q 005506 117 A--EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT--LRQHDFRQGSSCPPAGSSHQE 192 (693)
Q Consensus 117 g--~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~--V~lwDlr~~~~~~~~~~~~~~ 192 (693)
+ .|++||+.... ...+..+.......+|+|++..++++...+|. |.++|+.+++.
T Consensus 270 g~~~Iy~~d~~~g~-----------~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~---------- 328 (433)
T PRK04922 270 GNPEIYVMDLGSRQ-----------LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA---------- 328 (433)
T ss_pred CCceEEEEECCCCC-----------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe----------
Confidence 5 58888887532 23344455556778999955444444445565 55555544321
Q ss_pred cceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCC---cEEEEecCCCCCCcccccCCCCCCccccccc
Q 005506 193 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA---FARLYDRRMLPPLTSCQKRMSPPPCVNYFCP 269 (693)
Q Consensus 193 ~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg---~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~ 269 (693)
..+... .......+|+|+ +++|+..+.++ .|.+||+.++... .+.
T Consensus 329 -------------~~lt~~---g~~~~~~~~SpD-G~~Ia~~~~~~~~~~I~v~d~~~g~~~--------------~Lt- 376 (433)
T PRK04922 329 -------------ERLTFQ---GNYNARASVSPD-GKKIAMVHGSGGQYRIAVMDLSTGSVR--------------TLT- 376 (433)
T ss_pred -------------EEeecC---CCCccCEEECCC-CCEEEEEECCCCceeEEEEECCCCCeE--------------ECC-
Confidence 111110 112346799998 56776654433 6899998765321 110
Q ss_pred CccccCCCCccceEEEEEcCCCCEEEEEec---CCcEEEEECCCC
Q 005506 270 MHLSEHGRSSLHLTHVTFSPNGEEVLLSYS---GEHVYLMDVNHA 311 (693)
Q Consensus 270 ~~~~~~~~~~~~V~~v~fspdg~~L~sgs~---Dg~V~lwdl~~~ 311 (693)
.+. ......|+|||++|+..+. .+.|+++++...
T Consensus 377 -----~~~---~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 377 -----PGS---LDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred -----CCC---CCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 000 1345689999999887765 346888888653
No 221
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.26 E-value=8.1e-11 Score=123.67 Aligned_cols=180 Identities=18% Similarity=0.263 Sum_probs=125.7
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEec---cCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCC-----
Q 005506 60 SKGSLLISGSDDTHINVWSYSSRKLLHSIE---TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG----- 131 (693)
Q Consensus 60 ~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~---~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~----- 131 (693)
+.+--|+.|-.-|.|.+.|....+..+.+. .-....|+|++|.|.. +.+|+.+-.+|.+.++|.....+..
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~-~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGS-DSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCC-CceEEEEEecCceEEeeccccccCCCCccc
Confidence 456678888888999999876532211110 1234789999999986 6788888889999999875321110
Q ss_pred -C------------CCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEE
Q 005506 132 -L------------DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (693)
Q Consensus 132 -~------------~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~ 198 (693)
. ....-.|+..+.--...|..++|+| ++.+||+.+.||.+||||..+.+..
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~eLl--------------- 325 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSP-DGKYLATVSQDGFLRIFDFDTQELL--------------- 325 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcC-CCceEEEEecCceEEEeeccHHHHH---------------
Confidence 0 0001133444444456889999999 8899999999999999999876522
Q ss_pred eccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCC
Q 005506 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (693)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (693)
..+...-..+.|++|||| +++|++|+.|.-|.||.+...+.+.. .++|.
T Consensus 326 ----------g~mkSYFGGLLCvcWSPD-GKyIvtGGEDDLVtVwSf~erRVVAR--------------------GqGHk 374 (636)
T KOG2394|consen 326 ----------GVMKSYFGGLLCVCWSPD-GKYIVTGGEDDLVTVWSFEERRVVAR--------------------GQGHK 374 (636)
T ss_pred ----------HHHHhhccceEEEEEcCC-ccEEEecCCcceEEEEEeccceEEEe--------------------ccccc
Confidence 011112346889999998 79999999999999999986554321 24565
Q ss_pred ccceEEEEEc
Q 005506 279 SLHLTHVTFS 288 (693)
Q Consensus 279 ~~~V~~v~fs 288 (693)
. ||+.|+|+
T Consensus 375 S-WVs~VaFD 383 (636)
T KOG2394|consen 375 S-WVSVVAFD 383 (636)
T ss_pred c-ceeeEeec
Confidence 5 78888887
No 222
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.26 E-value=4.7e-10 Score=111.37 Aligned_cols=221 Identities=11% Similarity=0.114 Sum_probs=140.5
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEE-EEeCC------CcEEEEEc
Q 005506 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV-SGAGD------AEVRLFNL 124 (693)
Q Consensus 52 ~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~-sgs~D------g~V~vwdl 124 (693)
...+++|+.|..-++.|.++| .+||+.+.-+....- ..+.+.+.-+...-.+ ++|+ .|+.+ ..|.|||=
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r-~~~~~G~~~veMLfR~--N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASR-QFIDGGFKIVEMLFRS--NYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhh-ccccCchhhhhHhhhh--ceEEEecCCCCCCCCCceEEEEec
Confidence 345599999999999888776 999998764432222 1222223222322222 3333 44433 46999993
Q ss_pred CCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC-CCCCCC------------------
Q 005506 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ-GSSCPP------------------ 185 (693)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~-~~~~~~------------------ 185 (693)
... .++..+. -..+|++|.+.+ ..|++.- .+.|.+|.... .+....
T Consensus 83 ~k~----------~~i~el~-f~~~I~~V~l~r---~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~ 147 (346)
T KOG2111|consen 83 LKE----------RCIIELS-FNSEIKAVKLRR---DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSN 147 (346)
T ss_pred ccC----------cEEEEEE-eccceeeEEEcC---CeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCC
Confidence 321 4455554 578899999976 3454443 46788887652 221100
Q ss_pred ----CCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCc-EEEEecCCCCCCcccccCCCC
Q 005506 186 ----AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF-ARLYDRRMLPPLTSCQKRMSP 260 (693)
Q Consensus 186 ----~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~-IriwD~r~~~~~~~~~~~~~~ 260 (693)
..++...+...+.++.......-...+.|...|.|++.+-+ |.++||++..|+ |||||..++.++..++
T Consensus 148 k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~-Gt~vATaStkGTLIRIFdt~~g~~l~E~R----- 221 (346)
T KOG2111|consen 148 KSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQ-GTLVATASTKGTLIRIFDTEDGTLLQELR----- 221 (346)
T ss_pred ceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCC-ccEEEEeccCcEEEEEEEcCCCcEeeeee-----
Confidence 01111112223334333322212334568889999999997 789999999988 6999999987665443
Q ss_pred CCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCC
Q 005506 261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (693)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~ 311 (693)
+|-....|.+++|||++.+|++++.-|+|+||.+...
T Consensus 222 --------------RG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 222 --------------RGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred --------------cCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 2222236999999999999999999999999999874
No 223
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=7.9e-10 Score=111.29 Aligned_cols=227 Identities=16% Similarity=0.231 Sum_probs=144.2
Q ss_pred ccCCCcEEEEEECCCCCEEEEEe-CCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcC
Q 005506 47 EGHQGCVNAISWNSKGSLLISGS-DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (693)
Q Consensus 47 ~gH~~~V~~l~~s~~g~~LaSgs-~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~ 125 (693)
.|| .+|++|+|++||..|++++ .|..|+|||+.++.++.-. .--.+.+.-++|+|+ +++|..+.-|+..++|+..
T Consensus 193 pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~-~~glgg~slLkwSPd--gd~lfaAt~davfrlw~e~ 268 (445)
T KOG2139|consen 193 PGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI-PKGLGGFSLLKWSPD--GDVLFAATCDAVFRLWQEN 268 (445)
T ss_pred CCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc-ccCCCceeeEEEcCC--CCEEEEecccceeeeehhc
Confidence 355 7899999999999999988 4678999999998877655 344577889999999 6899999999999999766
Q ss_pred CCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCC-CCCcccceEEEeccCCc
Q 005506 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG-SSHQECRNILLDLRCGA 204 (693)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~-~~~~~~~~~l~~~~~~~ 204 (693)
.. .....+..-.++|..-+|+|.+..+|++++..-. +|.+.-...+.... .........+.|+..-.
T Consensus 269 q~----------wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~--lysl~f~~~~~~~~~~~~~k~~lliaDL~e~t 336 (445)
T KOG2139|consen 269 QS----------WTKERWILGSGRVQTACWSPCGSFLLFACSGSPR--LYSLTFDGEDSVFLRPQSIKRVLLIADLQEVT 336 (445)
T ss_pred cc----------ceecceeccCCceeeeeecCCCCEEEEEEcCCce--EEEEeecCCCccccCcccceeeeeeccchhhh
Confidence 42 1122223345699999999988788888776554 45444333222111 11111122223332111
Q ss_pred eeeecCCCCCccceEEEEEcCCCCcEEEEEeCCC--------cEEEEecCCCCCCcccccCCCCCCcccccccCccccCC
Q 005506 205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA--------FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (693)
Q Consensus 205 ~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg--------~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (693)
.......-..++.+++|.|. |.+||+.-..+ .|-+||.+...++.-. ++.... +
T Consensus 337 --i~ag~~l~cgeaq~lawDps-GeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels------------~cg~i~---g 398 (445)
T KOG2139|consen 337 --ICAGQRLCCGEAQCLAWDPS-GEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELS------------YCGMIG---G 398 (445)
T ss_pred --hhcCcccccCccceeeECCC-CCEEEEEEcCCchhhhhhhhhhhhcccccCceEEE------------eccccc---C
Confidence 00011112457889999997 78998876543 3677887764332211 000000 0
Q ss_pred CCccceEEEEEcC---CCCEEEEEecCCcEEEEECCC
Q 005506 277 RSSLHLTHVTFSP---NGEEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 277 ~~~~~V~~v~fsp---dg~~L~sgs~Dg~V~lwdl~~ 310 (693)
. +...|+|+| +|..|.++=..|.|.-|++.-
T Consensus 399 e---~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~f 432 (445)
T KOG2139|consen 399 E---YPAYISFGPLKNEGRLLSIAWSTGRIQRYPLTF 432 (445)
T ss_pred C---CCceEEeeecccCCcEEEEEeccCceEeeeeEE
Confidence 1 133466665 677777887888888887654
No 224
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=2.1e-10 Score=116.69 Aligned_cols=237 Identities=11% Similarity=0.105 Sum_probs=157.6
Q ss_pred EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCc----EEEEeccCCCcceEEEEEeeCCCCCEEEEEeCC--Cc
Q 005506 45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK----LLHSIETGHSANVFCTKFVPETSDELVVSGAGD--AE 118 (693)
Q Consensus 45 ~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~----~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~D--g~ 118 (693)
+..+.+++|-.+... + ..|++|-.+|.+.+|....+. .+..+ .....+..|.-+|.. ..++++|+.. ..
T Consensus 100 ~~~l~~~~I~gl~~~-d-g~Litc~~sG~l~~~~~k~~d~hss~l~~l--a~g~g~~~~r~~~~~-p~Iva~GGke~~n~ 174 (412)
T KOG3881|consen 100 TVSLGTKSIKGLKLA-D-GTLITCVSSGNLQVRHDKSGDLHSSKLIKL--ATGPGLYDVRQTDTD-PYIVATGGKENINE 174 (412)
T ss_pred ccccccccccchhhc-C-CEEEEEecCCcEEEEeccCCccccccceee--ecCCceeeeccCCCC-CceEecCchhcccc
Confidence 344455666666554 2 367888899999999987432 33334 223567778888775 5688889998 88
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCC--CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceE
Q 005506 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN--PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (693)
Q Consensus 119 V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~--~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~ 196 (693)
+.|||+... .+.+.....+.-..--.-.--++++.|.| + ...|++++.-+.||+||++.++.+ ..
T Consensus 175 lkiwdle~~-~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~-g~~~~~fat~T~~hqvR~YDt~~qRRP-----------V~ 241 (412)
T KOG3881|consen 175 LKIWDLEQS-KQIWSAKNVPNDRLGLRVPVWITDIRFLE-GSPNYKFATITRYHQVRLYDTRHQRRP-----------VA 241 (412)
T ss_pred eeeeecccc-eeeeeccCCCCccccceeeeeeccceecC-CCCCceEEEEecceeEEEecCcccCcc-----------ee
Confidence 999999864 11110000000000000112357788887 4 678999999999999999976533 11
Q ss_pred EEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCC
Q 005506 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (693)
Q Consensus 197 l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (693)
-++ -...+++++...|. ++.+++|..-|.+..||+|.++.+... . .+
T Consensus 242 ~fd-------------~~E~~is~~~l~p~-gn~Iy~gn~~g~l~~FD~r~~kl~g~~---------~----------kg 288 (412)
T KOG3881|consen 242 QFD-------------FLENPISSTGLTPS-GNFIYTGNTKGQLAKFDLRGGKLLGCG---------L----------KG 288 (412)
T ss_pred Eec-------------cccCcceeeeecCC-CcEEEEecccchhheecccCceeeccc---------c----------CC
Confidence 111 12457899999997 789999999999999999987643210 1 22
Q ss_pred CCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCC
Q 005506 277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN 334 (693)
Q Consensus 277 ~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~ 334 (693)
-.+ .|.+|..+|.+++|++++-|..|+|||+.+.+.....|... ..+.+-+.+..+
T Consensus 289 ~tG-sirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs-~lt~il~~~~~n 344 (412)
T KOG3881|consen 289 ITG-SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS-RLTFILLRDDVN 344 (412)
T ss_pred ccC-CcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc-cccEEEecCCcc
Confidence 233 59999999999999999999999999999955444444432 333444444433
No 225
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=1.1e-09 Score=120.92 Aligned_cols=228 Identities=11% Similarity=0.072 Sum_probs=138.8
Q ss_pred eEEeccCCCcEEEEEECCCCCEEEEEeCC---CcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEE-EEeCCCc
Q 005506 43 ERELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV-SGAGDAE 118 (693)
Q Consensus 43 ~~~l~gH~~~V~~l~~s~~g~~LaSgs~D---g~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~-sgs~Dg~ 118 (693)
...+..+...|.+.+|+|+|+.|+..+.+ ..|.+||+.+++... + ....+.+.+..|+|+ ++.|+ +.+.++.
T Consensus 188 ~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l-~~~~g~~~~~~~SPD--G~~la~~~~~~g~ 263 (427)
T PRK02889 188 AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-V-ANFKGSNSAPAWSPD--GRTLAVALSRDGN 263 (427)
T ss_pred ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-e-ecCCCCccceEECCC--CCEEEEEEccCCC
Confidence 34556778899999999999999887743 359999998886543 3 234456678999999 56554 6778888
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEE
Q 005506 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (693)
Q Consensus 119 V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~ 198 (693)
..||.+....+ ....+..+...+....|+|++..+++++..+|...+|.+....
T Consensus 264 ~~Iy~~d~~~~---------~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~----------------- 317 (427)
T PRK02889 264 SQIYTVNADGS---------GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG----------------- 317 (427)
T ss_pred ceEEEEECCCC---------CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC-----------------
Confidence 88887654221 1333444555567789999554455454456777777654221
Q ss_pred eccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCC---cEEEEecCCCCCCcccccCCCCCCcccccccCccccC
Q 005506 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA---FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (693)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg---~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (693)
+....+... .......+|+|+ +++|+..+.++ .|.+||+.++... .+. .
T Consensus 318 ----g~~~~lt~~---g~~~~~~~~SpD-G~~Ia~~s~~~g~~~I~v~d~~~g~~~--------------~lt------~ 369 (427)
T PRK02889 318 ----GAAQRVTFT---GSYNTSPRISPD-GKLLAYISRVGGAFKLYVQDLATGQVT--------------ALT------D 369 (427)
T ss_pred ----CceEEEecC---CCCcCceEECCC-CCEEEEEEccCCcEEEEEEECCCCCeE--------------Ecc------C
Confidence 000011110 012235689997 67777666554 5999998765321 110 0
Q ss_pred CCCccceEEEEEcCCCCEEEEEecCC---cEEEEECCCCCcceEEeecCCCceeEEeccC
Q 005506 276 GRSSLHLTHVTFSPNGEEVLLSYSGE---HVYLMDVNHAGGRAMRYTVGDASKIMSFTPT 332 (693)
Q Consensus 276 ~~~~~~V~~v~fspdg~~L~sgs~Dg---~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~ 332 (693)
+. ......|+|||++|+.++.++ .+++.++.. ........+.......+|+|.
T Consensus 370 ~~---~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g-~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 370 TT---RDESPSFAPNGRYILYATQQGGRSVLAAVSSDG-RIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CC---CccCceECCCCCEEEEEEecCCCEEEEEEECCC-CceEEeecCCCCCCCCccCCC
Confidence 00 134679999999998877643 466777743 323223223334444556553
No 226
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=1.3e-09 Score=120.87 Aligned_cols=206 Identities=11% Similarity=0.081 Sum_probs=131.5
Q ss_pred ceeEEeccCCCcEEEEEECCCCCEEEEEeC---CCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEE-EEEeCC
Q 005506 41 SQERELEGHQGCVNAISWNSKGSLLISGSD---DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGD 116 (693)
Q Consensus 41 ~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~---Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l-~sgs~D 116 (693)
...+.+..|...|.+.+|+|+|+.|+..+. +..|.+||+.+++.. .+ ..+.+.+.+.+|+|+ |+.| ++.+.+
T Consensus 192 ~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l-~~~~g~~~~~~~SPD--G~~la~~~~~~ 267 (435)
T PRK05137 192 ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LV-GNFPGMTFAPRFSPD--GRKVVMSLSQG 267 (435)
T ss_pred CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-Ee-ecCCCcccCcEECCC--CCEEEEEEecC
Confidence 344567788889999999999999988764 468999999887653 33 456677889999999 5554 566666
Q ss_pred Cc--EEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEe-CCC--cEEEEeCCCCCCCCCCCCCCc
Q 005506 117 AE--VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-EDG--TLRQHDFRQGSSCPPAGSSHQ 191 (693)
Q Consensus 117 g~--V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs-~Dg--~V~lwDlr~~~~~~~~~~~~~ 191 (693)
+. |.+||+... ....+..+........|+|++ ..|+..+ .+| .|.+||+..+..
T Consensus 268 g~~~Iy~~d~~~~-----------~~~~Lt~~~~~~~~~~~spDG-~~i~f~s~~~g~~~Iy~~d~~g~~~--------- 326 (435)
T PRK05137 268 GNTDIYTMDLRSG-----------TTTRLTDSPAIDTSPSYSPDG-SQIVFESDRSGSPQLYVMNADGSNP--------- 326 (435)
T ss_pred CCceEEEEECCCC-----------ceEEccCCCCccCceeEcCCC-CEEEEEECCCCCCeEEEEECCCCCe---------
Confidence 66 666677643 133344455566778999954 5444444 444 466667654321
Q ss_pred ccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCC---CcEEEEecCCCCCCcccccCCCCCCcccccc
Q 005506 192 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPPCVNYFC 268 (693)
Q Consensus 192 ~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~D---g~IriwD~r~~~~~~~~~~~~~~~~~~~~~~ 268 (693)
..+... ...+....|+|+ ++.|+..+.+ ..|.+||+..... ..+.
T Consensus 327 --------------~~lt~~---~~~~~~~~~Spd-G~~ia~~~~~~~~~~i~~~d~~~~~~--------------~~lt 374 (435)
T PRK05137 327 --------------RRISFG---GGRYSTPVWSPR-GDLIAFTKQGGGQFSIGVMKPDGSGE--------------RILT 374 (435)
T ss_pred --------------EEeecC---CCcccCeEECCC-CCEEEEEEcCCCceEEEEEECCCCce--------------Eecc
Confidence 111111 123456789998 5677665543 3577888753211 1110
Q ss_pred cCccccCCCCccceEEEEEcCCCCEEEEEecC------CcEEEEECCCCC
Q 005506 269 PMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG------EHVYLMDVNHAG 312 (693)
Q Consensus 269 ~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~D------g~V~lwdl~~~~ 312 (693)
.+. .+..+.|+|||+.|+..+.+ ..++++|+..+.
T Consensus 375 ------~~~---~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 375 ------SGF---LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred ------CCC---CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 001 25568999999998766542 368888987744
No 227
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.25 E-value=1.4e-10 Score=115.89 Aligned_cols=241 Identities=14% Similarity=0.221 Sum_probs=156.4
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcE----EEEeccCCC------------cceEEEEEeeCCCCCEEEEE
Q 005506 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL----LHSIETGHS------------ANVFCTKFVPETSDELVVSG 113 (693)
Q Consensus 50 ~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~----~~~l~~~h~------------~~I~sv~f~p~~~~~~l~sg 113 (693)
.+-|.++.|+..|.+||||..+|+|.++.-..... ..+..+.|. ..|..+.|++..+...++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 45789999999999999999999999997543221 222223343 46889999998777788888
Q ss_pred eCCCcEEEEEcCCCCCCCCC-------------------------CCCCCCceee-ccCCCCeEEEEEecCCCcEEEEEe
Q 005506 114 AGDAEVRLFNLSRFSGRGLD-------------------------DNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSAS 167 (693)
Q Consensus 114 s~Dg~V~vwdl~~~~~~~~~-------------------------~~~~~~~~~~-~~h~~~V~~la~sp~~~~~l~Sgs 167 (693)
..|.+|++|.+.....+... .....|.+.+ .+|+-.|.+|.++. +...++| +
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~lS-A 182 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFLS-A 182 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEee-c
Confidence 89999999998754322200 0001112222 35888899999988 4455544 4
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCC
Q 005506 168 EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (693)
Q Consensus 168 ~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~ 247 (693)
.|=.|.+|.+.-...+ -.+.|+....... -+..|++..|+|...++++-.++.|.||+-|+|.
T Consensus 183 DdLRINLWnlei~d~s-----------FnIVDIKP~nmEe------LteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~ 245 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQS-----------FNIVDIKPANMEE------LTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQ 245 (433)
T ss_pred cceeeeeccccccCCc-----------eeEEEccccCHHH------HHHHHhhhccCHhHccEEEEecCCCcEEEeechh
Confidence 6788999998754322 2344443322111 1335788999999889999999999999999995
Q ss_pred CCCC----cccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEee
Q 005506 248 LPPL----TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYT 319 (693)
Q Consensus 248 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~ 319 (693)
...- ..+..+.. +. -..|... --..|..+.|+++|+|+++-.. -+|.+||++....+...+.
T Consensus 246 ~aLCd~hsKlfEeped-p~-~rsffse-------iIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~ 311 (433)
T KOG1354|consen 246 SALCDAHSKLFEEPED-PS-SRSFFSE-------IISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYP 311 (433)
T ss_pred hhhhcchhhhhccccC-Cc-chhhHHH-------HhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEe
Confidence 4211 00111111 11 1111000 0114889999999999987643 4899999977555544443
No 228
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=8.2e-10 Score=122.71 Aligned_cols=271 Identities=13% Similarity=0.142 Sum_probs=171.3
Q ss_pred CCcCcccccchhhh--cccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEE
Q 005506 24 PDVNHSLQMHSSLV--RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 101 (693)
Q Consensus 24 ~~~~~~l~~~~~~i--~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f 101 (693)
.+.+.++.+|..+- ..-...+.|.-|...|+++.|+++|.+|.||+..+.+.+|.+.+++ +++...-.++|..+.+
T Consensus 223 ~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~v 300 (792)
T KOG1963|consen 223 GDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVV 300 (792)
T ss_pred eccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC--cccccccCCeeEEEEE
Confidence 56678899998877 3333456788899999999999999999999999999999999987 4555677899999999
Q ss_pred eeCCCCCEEEEEeCCCcEEEEEcCCCCCCCC-CCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 005506 102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGL-DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180 (693)
Q Consensus 102 ~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~-~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~ 180 (693)
+|+ +.+.+....|+.|++-.......... .......-..-....+-.+.++++| ..+.++-.+..|.|.+||+-+.
T Consensus 301 S~d--s~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td 377 (792)
T KOG1963|consen 301 SPD--SDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTD 377 (792)
T ss_pred cCC--CCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEecccc
Confidence 999 57888888899999987753221110 0000000000112345567788888 5566777888899999998766
Q ss_pred CCCCCCC-------CCC---------------------------------cccceEEEeccCCce----eeecCCCCCcc
Q 005506 181 SSCPPAG-------SSH---------------------------------QECRNILLDLRCGAK----RSLADPPKQTL 216 (693)
Q Consensus 181 ~~~~~~~-------~~~---------------------------------~~~~~~l~~~~~~~~----~~l~~~~~~~~ 216 (693)
+...... .+. .+....+|....... ......|-...
T Consensus 378 ~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~ 457 (792)
T KOG1963|consen 378 STIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNA 457 (792)
T ss_pred ceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCce
Confidence 5331000 000 000111221111110 01111222223
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEE
Q 005506 217 SLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL 296 (693)
Q Consensus 217 ~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~s 296 (693)
.+..+..+|.+...+++++.||.+++|-+...+.+.+.... =.|. ... . ....+++.++|+.||. +++
T Consensus 458 ~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~---W~c~-----~i~--s-y~k~~i~a~~fs~dGs-lla 525 (792)
T KOG1963|consen 458 FVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSN---WTCK-----AIG--S-YHKTPITALCFSQDGS-LLA 525 (792)
T ss_pred eEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccc---eEEe-----eee--c-cccCcccchhhcCCCc-EEE
Confidence 34444555655558999999999999998655433221100 0010 000 0 1233699999999996 556
Q ss_pred EecCCcEEEEECCCC
Q 005506 297 SYSGEHVYLMDVNHA 311 (693)
Q Consensus 297 gs~Dg~V~lwdl~~~ 311 (693)
.+.++.|.+||..+.
T Consensus 526 ~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 526 VSFDDTITIWDYDTK 540 (792)
T ss_pred EecCCEEEEecCCCh
Confidence 667889999999983
No 229
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=1.2e-09 Score=120.74 Aligned_cols=222 Identities=11% Similarity=0.102 Sum_probs=133.0
Q ss_pred EEeccCCCcEEEEEECCCCCEEEEEe---CCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEE-EeCCC--
Q 005506 44 RELEGHQGCVNAISWNSKGSLLISGS---DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVS-GAGDA-- 117 (693)
Q Consensus 44 ~~l~gH~~~V~~l~~s~~g~~LaSgs---~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~s-gs~Dg-- 117 (693)
+.+..+...+.+.+|+|+|+.||..+ .+..|.+|++.+++... + ....+.+..+.|+|+ |+.|+. .+.++
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l-~~~~~~~~~~~~SPD--G~~La~~~~~~g~~ 267 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-V-ASFPRHNGAPAFSPD--GSKLAFALSKTGSL 267 (429)
T ss_pred EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-c-cCCCCCcCCeEECCC--CCEEEEEEcCCCCc
Confidence 44555677899999999999998754 24579999998875433 2 223344557899999 566654 44455
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEE--eCCCCCCCCCCCCCCcccce
Q 005506 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQH--DFRQGSSCPPAGSSHQECRN 195 (693)
Q Consensus 118 ~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lw--Dlr~~~~~~~~~~~~~~~~~ 195 (693)
.|.+||+.... ...+..+...+....|+|++..++++...+|...+| |+..+.
T Consensus 268 ~I~~~d~~tg~-----------~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~-------------- 322 (429)
T PRK03629 268 NLYVMDLASGQ-----------IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA-------------- 322 (429)
T ss_pred EEEEEECCCCC-----------EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC--------------
Confidence 48888987531 223333445678899999544444444445555555 443322
Q ss_pred EEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCC---CcEEEEecCCCCCCcccccCCCCCCcccccccCcc
Q 005506 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL 272 (693)
Q Consensus 196 ~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~D---g~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (693)
...+.. .........|+|+ +++|+..+.+ ..|.+||+.++... .+...
T Consensus 323 ---------~~~lt~---~~~~~~~~~~SpD-G~~Ia~~~~~~g~~~I~~~dl~~g~~~--------------~Lt~~-- 373 (429)
T PRK03629 323 ---------PQRITW---EGSQNQDADVSSD-GKFMVMVSSNGGQQHIAKQDLATGGVQ--------------VLTDT-- 373 (429)
T ss_pred ---------eEEeec---CCCCccCEEECCC-CCEEEEEEccCCCceEEEEECCCCCeE--------------EeCCC--
Confidence 111111 1122346789998 5666665443 35888898765311 11000
Q ss_pred ccCCCCccceEEEEEcCCCCEEEEEecCC---cEEEEECCCCCcceEEeecCCCceeEEecc
Q 005506 273 SEHGRSSLHLTHVTFSPNGEEVLLSYSGE---HVYLMDVNHAGGRAMRYTVGDASKIMSFTP 331 (693)
Q Consensus 273 ~~~~~~~~~V~~v~fspdg~~L~sgs~Dg---~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p 331 (693)
. ......|+|||++|+.++.++ .++++++.... ...+..+.......+|+|
T Consensus 374 ----~---~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~-~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 374 ----F---LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARLPATDGQVKFPAWSP 427 (429)
T ss_pred ----C---CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC-eEECccCCCCcCCcccCC
Confidence 0 123578999999999988765 37888886533 333333344455566665
No 230
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.23 E-value=8.9e-11 Score=113.48 Aligned_cols=163 Identities=17% Similarity=0.272 Sum_probs=124.0
Q ss_pred cCCCcEEEEEECCC-CC--EEEEEeCCCcEEEEECCCCcEEEEec---------cCCCcceEEEEEeeCCCCCEEEEEeC
Q 005506 48 GHQGCVNAISWNSK-GS--LLISGSDDTHINVWSYSSRKLLHSIE---------TGHSANVFCTKFVPETSDELVVSGAG 115 (693)
Q Consensus 48 gH~~~V~~l~~s~~-g~--~LaSgs~Dg~I~IWd~~~~~~~~~l~---------~~h~~~I~sv~f~p~~~~~~l~sgs~ 115 (693)
+..+.|.|..|... ++ +|+.|-.+|.|.+||+.++..+..+. ..|..+|.++.|.+.. ..=++|+.
T Consensus 148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~--~rGisgga 225 (323)
T KOG0322|consen 148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC--DRGISGGA 225 (323)
T ss_pred cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh--cCCcCCCc
Confidence 46788999987653 33 56678899999999999874333321 4689999999999764 44567888
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccce
Q 005506 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 195 (693)
Q Consensus 116 Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~ 195 (693)
+..+..|.+....+... ......-..-.|..+.+-| ++++++|++.|+.||+|..++..+.
T Consensus 226 ~dkl~~~Sl~~s~gslq------~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pL------------ 286 (323)
T KOG0322|consen 226 DDKLVMYSLNHSTGSLQ------IRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPL------------ 286 (323)
T ss_pred cccceeeeeccccCccc------ccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCch------------
Confidence 88999999987544321 1112222345688888889 7799999999999999999987643
Q ss_pred EEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEec
Q 005506 196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR 245 (693)
Q Consensus 196 ~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~ 245 (693)
....-|...|.+++|+|+ ..++|+++.|++|.+|++
T Consensus 287 -------------AVLkyHsagvn~vAfspd-~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 287 -------------AVLKYHSAGVNAVAFSPD-CELMAAASKDARISLWKL 322 (323)
T ss_pred -------------hhhhhhhcceeEEEeCCC-CchhhhccCCceEEeeec
Confidence 223346678999999997 679999999999999986
No 231
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.23 E-value=2.8e-10 Score=113.06 Aligned_cols=268 Identities=13% Similarity=0.158 Sum_probs=172.9
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCC
Q 005506 55 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD 134 (693)
Q Consensus 55 ~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 134 (693)
-.+|+|+|+++|+++.- ++.|=|.++-+..+.+ ..-..|.-+.|..++ -.+|.....|+.|.+|++..+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf--~cldki~yieW~ads-~~ilC~~yk~~~vqvwsl~Qp------- 81 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF--LCLDKIVYIEWKADS-CHILCVAYKDPKVQVWSLVQP------- 81 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHH--HHHHHhhheeeeccc-eeeeeeeeccceEEEEEeecc-------
Confidence 35799999999999875 8888898877655544 124567788998875 466777788999999999965
Q ss_pred CCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCC--------CCCCc-----------ccc-
Q 005506 135 NAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA--------GSSHQ-----------ECR- 194 (693)
Q Consensus 135 ~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~--------~~~~~-----------~~~- 194 (693)
+-...+......+..++|+|++.++|.+...|-.|.+|.+.+....... ..-+. +|.
T Consensus 82 ---ew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkd 158 (447)
T KOG4497|consen 82 ---EWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKD 158 (447)
T ss_pred ---eeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHH
Confidence 3355666778889999999987789999999999999999876422000 00000 010
Q ss_pred ------------------------eEEEeccCCceeeecCC--------CCCccceEEEEEcCCCCcEEEEEeCCCcEEE
Q 005506 195 ------------------------NILLDLRCGAKRSLADP--------PKQTLSLKSCDISSTRPHLLLVGGSDAFARL 242 (693)
Q Consensus 195 ------------------------~~l~~~~~~~~~~l~~~--------~~~~~~v~sl~~sp~~~~~Latgs~Dg~Iri 242 (693)
.+-|.. .|....+... -.....+..++|+|. +++|++|+.|+.+|+
T Consensus 159 yv~i~~c~~W~ll~~f~~dT~DltgieWsP-dg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~-~qflavGsyD~~lrv 236 (447)
T KOG4497|consen 159 YVQISSCKAWILLKEFKLDTIDLTGIEWSP-DGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPC-NQFLAVGSYDQMLRV 236 (447)
T ss_pred HHHHHhhHHHHHHHhcCCCcccccCceECC-CCcEEEEecchhhheeeeeeeccceeEEEeccc-cceEEeeccchhhhh
Confidence 000000 0111111110 012346888999996 689999999999999
Q ss_pred EecCCCCCCcccccCC-------------------CCCCcccccccCcc---------------------------ccCC
Q 005506 243 YDRRMLPPLTSCQKRM-------------------SPPPCVNYFCPMHL---------------------------SEHG 276 (693)
Q Consensus 243 wD~r~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~---------------------------~~~~ 276 (693)
.+--+.++...+.+.. ....|+. |.|... ....
T Consensus 237 lnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLs-f~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~p 315 (447)
T KOG4497|consen 237 LNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLS-FTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFP 315 (447)
T ss_pred hceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccc-cCCCccccCccccchhhhhhhhcceeeecccCCCCCC
Confidence 8776665544332110 0011111 111000 0011
Q ss_pred CCccceEEEEEcCCCCEEEEEec--CCcEEEEECCCCCcceEEeecCCCceeEEeccCCCcccccC
Q 005506 277 RSSLHLTHVTFSPNGEEVLLSYS--GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQP 340 (693)
Q Consensus 277 ~~~~~V~~v~fspdg~~L~sgs~--Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~ 340 (693)
.+...+..++|++|..++++-.. -+.+.+||++..+.-.+. ...++++.+.|.|....+..-.
T Consensus 316 nPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL-iQk~piraf~WdP~~prL~vct 380 (447)
T KOG4497|consen 316 NPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL-IQKHPIRAFEWDPGRPRLVVCT 380 (447)
T ss_pred CcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh-hhccceeEEEeCCCCceEEEEc
Confidence 22335788999999999998766 368999999996544443 3467788899999876654433
No 232
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.19 E-value=1.9e-10 Score=120.67 Aligned_cols=206 Identities=14% Similarity=0.187 Sum_probs=143.7
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCcee
Q 005506 63 SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSAL 142 (693)
Q Consensus 63 ~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~ 142 (693)
..|+.++.||.+.|.+- .++....+ ..|.+.|.+-.|+|+ |.-|+|++.||.|++|.-.. -...+
T Consensus 76 d~~~i~s~DGkf~il~k-~~rVE~sv-~AH~~A~~~gRW~~d--GtgLlt~GEDG~iKiWSrsG-----------MLRSt 140 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNK-SARVERSI-SAHAAAISSGRWSPD--GAGLLTAGEDGVIKIWSRSG-----------MLRST 140 (737)
T ss_pred ceEEEEcCCceEEEecc-cchhhhhh-hhhhhhhhhcccCCC--CceeeeecCCceEEEEeccc-----------hHHHH
Confidence 57888999999999884 56666777 799999999999999 68899999999999997652 12233
Q ss_pred eccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEE
Q 005506 143 YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCD 222 (693)
Q Consensus 143 ~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~ 222 (693)
+.....+|+|++|.|++.+++.+.+. .+.+=-+..... .+-| ..|..-|-++.
T Consensus 141 l~Q~~~~v~c~~W~p~S~~vl~c~g~--h~~IKpL~~n~k------------~i~W-------------kAHDGiiL~~~ 193 (737)
T KOG1524|consen 141 VVQNEESIRCARWAPNSNSIVFCQGG--HISIKPLAANSK------------IIRW-------------RAHDGLVLSLS 193 (737)
T ss_pred HhhcCceeEEEEECCCCCceEEecCC--eEEEeecccccc------------eeEE-------------eccCcEEEEee
Confidence 34456789999999988888877654 333333322110 1111 24667899999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCc
Q 005506 223 ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEH 302 (693)
Q Consensus 223 ~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~ 302 (693)
|+|. .+++++|+.|-..++||-.-. ++.. .....++|++|+|.|+ +.+++++. ++
T Consensus 194 W~~~-s~lI~sgGED~kfKvWD~~G~-~Lf~---------------------S~~~ey~ITSva~npd-~~~~v~S~-nt 248 (737)
T KOG1524|consen 194 WSTQ-SNIIASGGEDFRFKIWDAQGA-NLFT---------------------SAAEEYAITSVAFNPE-KDYLLWSY-NT 248 (737)
T ss_pred cCcc-ccceeecCCceeEEeecccCc-cccc---------------------CChhccceeeeeeccc-cceeeeee-ee
Confidence 9997 689999999999999997532 1111 1122347999999999 55555543 34
Q ss_pred EEEEECCCCCcceEEeecCCCceeEEeccCCCcccccCCccccc
Q 005506 303 VYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFL 346 (693)
Q Consensus 303 V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~ 346 (693)
.++=..+. +.+-.++|+|+...+......++.+
T Consensus 249 ~R~~~p~~-----------GSifnlsWS~DGTQ~a~gt~~G~v~ 281 (737)
T KOG1524|consen 249 ARFSSPRV-----------GSIFNLSWSADGTQATCGTSTGQLI 281 (737)
T ss_pred eeecCCCc-----------cceEEEEEcCCCceeeccccCceEE
Confidence 44222222 2344578899888877766666554
No 233
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.19 E-value=2.3e-10 Score=119.15 Aligned_cols=282 Identities=15% Similarity=0.114 Sum_probs=184.5
Q ss_pred cccccchhhhcccceeEEeccCCCcEEEEEECCC--CCEEEEEeCCCcEEEEECCCC-cEE-EEeccCCCcceEEEEEee
Q 005506 28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSK--GSLLISGSDDTHINVWSYSSR-KLL-HSIETGHSANVFCTKFVP 103 (693)
Q Consensus 28 ~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~--g~~LaSgs~Dg~I~IWd~~~~-~~~-~~l~~~h~~~I~sv~f~p 103 (693)
.++-+|++......+ .-..||...|..-.|-|. ...+++++.||.|++=.+... .+. ......|.++|.-++.-|
T Consensus 164 ~~vv~WdW~~~~~~l-~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p 242 (559)
T KOG1334|consen 164 LQVVVWDWVSGSPKL-SFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEP 242 (559)
T ss_pred ceEEeehhhccCccc-ccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecC
Confidence 444455544332211 122479999998899884 468999999999999876543 333 122267999999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCC---CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 005506 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR---RVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180 (693)
Q Consensus 104 ~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~---~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~ 180 (693)
.+ ...|.|++.|+.|.-+|++..... .....-..+.. ....|+..|.+.+.|++++.|-.+++||.|.-
T Consensus 243 ~s-p~~f~S~geD~~v~~~Dlr~~~pa-------~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~ 314 (559)
T KOG1334|consen 243 DS-PKPFLSCGEDAVVFHIDLRQDVPA-------EKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRI 314 (559)
T ss_pred CC-CCcccccccccceeeeeeccCCcc-------ceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccch
Confidence 97 789999999999999999864221 11222223333 56889999999999999999999999999875
Q ss_pred CCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCC
Q 005506 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP 260 (693)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~ 260 (693)
..-......+..|...+.. .....|++++|+.+.+ -|+++-+|-.|++|...++.--... +..+
T Consensus 315 ~~e~~n~~~~~f~p~hl~~-------------d~~v~ITgl~Ysh~~s-ElLaSYnDe~IYLF~~~~~~G~~p~--~~s~ 378 (559)
T KOG1334|consen 315 DKEENNGVLDKFCPHHLVE-------------DDPVNITGLVYSHDGS-ELLASYNDEDIYLFNKSMGDGSEPD--PSSP 378 (559)
T ss_pred hhccccchhhhcCCccccc-------------cCcccceeEEecCCcc-ceeeeecccceEEeccccccCCCCC--CCcc
Confidence 5322222122222222211 3356799999998744 5556678889999955443210000 0000
Q ss_pred CCcccccccCccccCCCCcc-ceEEEEE-cCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCcccc
Q 005506 261 PPCVNYFCPMHLSEHGRSSL-HLTHVTF-SPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLEL 338 (693)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~-~V~~v~f-spdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~ 338 (693)
...+.+... +||.+. .|..+-| -|...|+++|+..|.|.||+-.+++....+..-.+.++++..+|...-++.
T Consensus 379 ---~~~~~k~vY--KGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAs 453 (559)
T KOG1334|consen 379 ---REQYVKRVY--KGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLAS 453 (559)
T ss_pred ---hhhccchhh--cccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhc
Confidence 011111111 334332 3666764 589999999999999999999998766666666667778888887655543
Q ss_pred c
Q 005506 339 Q 339 (693)
Q Consensus 339 ~ 339 (693)
.
T Consensus 454 S 454 (559)
T KOG1334|consen 454 S 454 (559)
T ss_pred c
Confidence 3
No 234
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.18 E-value=8.8e-09 Score=102.49 Aligned_cols=186 Identities=20% Similarity=0.334 Sum_probs=132.6
Q ss_pred CCC-cCcccccchhhhcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECC-CCcEEEEeccCC-CcceEEE
Q 005506 23 RPD-VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS-SRKLLHSIETGH-SANVFCT 99 (693)
Q Consensus 23 ~~~-~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~-~~~~~~~l~~~h-~~~I~sv 99 (693)
+|. -.+++-+|+....+. +.+|. ...+|.++.+.++ .|++.- ..+|.||... ..+.++.+.+.. ...+.+
T Consensus 69 ~pky~pNkviIWDD~k~~~--i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~- 141 (346)
T KOG2111|consen 69 RPKYPPNKVIIWDDLKERC--IIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCS- 141 (346)
T ss_pred CCCCCCceEEEEecccCcE--EEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEe-
Confidence 344 457888999665554 33443 3468999999865 566654 4689999998 456666664322 333333
Q ss_pred EEeeCCCCCEEEE-EeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCc-EEEEeC
Q 005506 100 KFVPETSDELVVS-GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT-LRQHDF 177 (693)
Q Consensus 100 ~f~p~~~~~~l~s-gs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~-V~lwDl 177 (693)
.+|..+..+||. |-.-|.|+|-|+..... .+...+.+|...|.+++.+. .+.++||+|..|+ |||||.
T Consensus 142 -~~~~~~k~~LafPg~k~GqvQi~dL~~~~~--------~~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt 211 (346)
T KOG2111|consen 142 -LCPTSNKSLLAFPGFKTGQVQIVDLASTKP--------NAPSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDT 211 (346)
T ss_pred -ecCCCCceEEEcCCCccceEEEEEhhhcCc--------CCceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEc
Confidence 445442344443 33568999999985421 23577889999999999998 7799999999997 789999
Q ss_pred CCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC
Q 005506 178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (693)
Q Consensus 178 r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~ 249 (693)
.+++.. ..++.|. ....|.|++|||+ ..+||+++..|+|.||.++...
T Consensus 212 ~~g~~l--------------~E~RRG~---------d~A~iy~iaFSp~-~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 212 EDGTLL--------------QELRRGV---------DRADIYCIAFSPN-SSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred CCCcEe--------------eeeecCC---------chheEEEEEeCCC-ccEEEEEcCCCeEEEEEeecCC
Confidence 988633 3333332 3467999999997 7899999999999999998654
No 235
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.18 E-value=9.5e-10 Score=125.51 Aligned_cols=215 Identities=17% Similarity=0.232 Sum_probs=143.3
Q ss_pred EECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEe
Q 005506 77 WSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 156 (693)
Q Consensus 77 Wd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~s 156 (693)
|++ .|..+..+ ..|...|..++.++.. +.+|+||+.||+|++|+.+...+.. .......++..-..++..+...
T Consensus 1034 W~p-~G~lVAhL-~Ehs~~v~k~a~s~~~-~s~FvsgS~DGtVKvW~~~k~~~~~---~s~rS~ltys~~~sr~~~vt~~ 1107 (1431)
T KOG1240|consen 1034 WNP-RGILVAHL-HEHSSAVIKLAVSSEH-TSLFVSGSDDGTVKVWNLRKLEGEG---GSARSELTYSPEGSRVEKVTMC 1107 (1431)
T ss_pred CCc-cceEeehh-hhccccccceeecCCC-CceEEEecCCceEEEeeehhhhcCc---ceeeeeEEEeccCCceEEEEec
Confidence 665 47778888 6899999999998874 5899999999999999998643321 1223344555457889999998
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCC-cEEEEEe
Q 005506 157 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRP-HLLLVGG 235 (693)
Q Consensus 157 p~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~-~~Latgs 235 (693)
+ +++.||.++.||.|++.++....... ..+... .+.........+..-++..... ..|+.+.
T Consensus 1108 ~-~~~~~Av~t~DG~v~~~~id~~~~~~------~~~~~~----------ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T 1170 (1431)
T KOG1240|consen 1108 G-NGDQFAVSTKDGSVRVLRIDHYNVSK------RVATQV----------RIPNLKKDGVVVSMHAFTAIVQSHVLVYAT 1170 (1431)
T ss_pred c-CCCeEEEEcCCCeEEEEEcccccccc------ceeeee----------ecccccCCCceEEeecccccccceeEEEEE
Confidence 8 77899999999999999987632110 000000 0001111122333334433323 3788888
Q ss_pred CCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcc-
Q 005506 236 SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR- 314 (693)
Q Consensus 236 ~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~- 314 (693)
.-+.|..||+++.......+.. ...+.|++++.+|.+.++++|...|.+-+||++-....
T Consensus 1171 ~~~~iv~~D~r~~~~~w~lk~~-------------------~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~ 1231 (1431)
T KOG1240|consen 1171 DLSRIVSWDTRMRHDAWRLKNQ-------------------LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPIL 1231 (1431)
T ss_pred eccceEEecchhhhhHHhhhcC-------------------ccccceeEEEecCCceEEEEecCCceEEEEEeecCceee
Confidence 9999999999987654333211 11125999999999999999999999999999984322
Q ss_pred eEEeecCCCceeEEeccCC
Q 005506 315 AMRYTVGDASKIMSFTPTL 333 (693)
Q Consensus 315 ~~~~~~~~~~~~~~~~p~~ 333 (693)
...+...-+++.+...|..
T Consensus 1232 sw~~P~~~~i~~v~~~~~~ 1250 (1431)
T KOG1240|consen 1232 SWEHPARAPIRHVWLCPTY 1250 (1431)
T ss_pred cccCcccCCcceEEeeccC
Confidence 2222333345556666553
No 236
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.17 E-value=3.2e-11 Score=124.61 Aligned_cols=215 Identities=15% Similarity=0.188 Sum_probs=156.9
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCC
Q 005506 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG 131 (693)
Q Consensus 52 ~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~ 131 (693)
.|.++.|-.+.+++|++.. ..+.|||- .|..++.+ ..| ..|+.+.|.|. .-+|++++..|.++..|+..+
T Consensus 172 tv~Dv~~LHneq~~AVAQK-~y~yvYD~-~GtElHCl-k~~-~~v~rLeFLPy--HfLL~~~~~~G~L~Y~DVS~G---- 241 (545)
T KOG1272|consen 172 TVRDVTFLHNEQFFAVAQK-KYVYVYDN-NGTELHCL-KRH-IRVARLEFLPY--HFLLVAASEAGFLKYQDVSTG---- 241 (545)
T ss_pred hhhhhhhhcchHHHHhhhh-ceEEEecC-CCcEEeeh-hhc-Cchhhhcccch--hheeeecccCCceEEEeechh----
Confidence 4556666666777777754 68999995 57788888 333 57999999999 478899999999999999976
Q ss_pred CCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCC
Q 005506 132 LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP 211 (693)
Q Consensus 132 ~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 211 (693)
+.+..+..-.+++..++-+| -..++-+|...|+|.+|.....++. ...
T Consensus 242 ------klVa~~~t~~G~~~vm~qNP-~NaVih~GhsnGtVSlWSP~skePL-------------------------vKi 289 (545)
T KOG1272|consen 242 ------KLVASIRTGAGRTDVMKQNP-YNAVIHLGHSNGTVSLWSPNSKEPL-------------------------VKI 289 (545)
T ss_pred ------hhhHHHHccCCccchhhcCC-ccceEEEcCCCceEEecCCCCcchH-------------------------HHH
Confidence 55777777788899999999 4468889999999999997765532 223
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCC
Q 005506 212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG 291 (693)
Q Consensus 212 ~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg 291 (693)
-.|..+|.+|++.+. |+++||.+.|..|+|||+|+...+.+... ..+...++||..|
T Consensus 290 LcH~g~V~siAv~~~-G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t----------------------p~~a~~ls~Sqkg 346 (545)
T KOG1272|consen 290 LCHRGPVSSIAVDRG-GRYMATTGLDRKVKIWDLRNFYQLHTYRT----------------------PHPASNLSLSQKG 346 (545)
T ss_pred HhcCCCcceEEECCC-CcEEeecccccceeEeeeccccccceeec----------------------CCCcccccccccc
Confidence 356789999999996 89999999999999999998754432211 1146678888776
Q ss_pred CEEEEEecCCcEEEEE-CCCCC-c---ceEEeecCCCceeEEeccCC
Q 005506 292 EEVLLSYSGEHVYLMD-VNHAG-G---RAMRYTVGDASKIMSFTPTL 333 (693)
Q Consensus 292 ~~L~sgs~Dg~V~lwd-l~~~~-~---~~~~~~~~~~~~~~~~~p~~ 333 (693)
+++.+....|.||. .-.+. . +-+....+.++..+.|-|..
T Consensus 347 --lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~E 391 (545)
T KOG1272|consen 347 --LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYE 391 (545)
T ss_pred --ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHH
Confidence 56666777999994 33311 1 22222334456666676653
No 237
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.16 E-value=8.3e-09 Score=110.10 Aligned_cols=217 Identities=12% Similarity=0.159 Sum_probs=129.9
Q ss_pred CcEEEEEECCCCCEEEEEeC-CCcEEEEECCCCc----EEEEeccCCCcceEEEEEeeCCCCCEE-EEEeCCCcEEEEEc
Q 005506 51 GCVNAISWNSKGSLLISGSD-DTHINVWSYSSRK----LLHSIETGHSANVFCTKFVPETSDELV-VSGAGDAEVRLFNL 124 (693)
Q Consensus 51 ~~V~~l~~s~~g~~LaSgs~-Dg~I~IWd~~~~~----~~~~l~~~h~~~I~sv~f~p~~~~~~l-~sgs~Dg~V~vwdl 124 (693)
+....+.|+|+|++|++++. ++.|.+|++.+.. .+..+ .+.....+++|+|+ ++++ ++...++.|.+||+
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~--~~~~~~~~~~~~p~--g~~l~v~~~~~~~v~v~d~ 155 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII--EGLEGCHSANIDPD--NRTLWVPCLKEDRIRLFTL 155 (330)
T ss_pred CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec--cCCCcccEeEeCCC--CCEEEEeeCCCCEEEEEEE
Confidence 45678999999998888764 7899999997422 22222 23344677899998 4555 56667799999999
Q ss_pred CCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeC-CCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCC
Q 005506 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 203 (693)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~-Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (693)
... +... ... ....... .......++|+| ++.+++++.+ ++.|.+||+...... ...+..+..
T Consensus 156 ~~~-g~l~-~~~-~~~~~~~-~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~----------~~~~~~~~~- 219 (330)
T PRK11028 156 SDD-GHLV-AQE-PAEVTTV-EGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGE----------IECVQTLDM- 219 (330)
T ss_pred CCC-Cccc-ccC-CCceecC-CCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCC----------EEEEEEEec-
Confidence 752 2110 000 0000111 123467899999 4555555554 999999999743100 001111000
Q ss_pred ceeeecCCCCCccceEEEEEcCCCCcEEEEEe-CCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccce
Q 005506 204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL 282 (693)
Q Consensus 204 ~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs-~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 282 (693)
+.....+......+.++|+ +++|+++. .++.|.+|++........+ +... .. ....
T Consensus 220 ----~p~~~~~~~~~~~i~~~pd-g~~lyv~~~~~~~I~v~~i~~~~~~~~~---------~~~~-----~~----~~~p 276 (330)
T PRK11028 220 ----MPADFSDTRWAADIHITPD-GRHLYACDRTASLISVFSVSEDGSVLSF---------EGHQ-----PT----ETQP 276 (330)
T ss_pred ----CCCcCCCCccceeEEECCC-CCEEEEecCCCCeEEEEEEeCCCCeEEE---------eEEE-----ec----cccC
Confidence 0000011123346889997 56777764 5789999998643211000 0000 00 0124
Q ss_pred EEEEEcCCCCEEEEEec-CCcEEEEECCC
Q 005506 283 THVTFSPNGEEVLLSYS-GEHVYLMDVNH 310 (693)
Q Consensus 283 ~~v~fspdg~~L~sgs~-Dg~V~lwdl~~ 310 (693)
..+.|+|+|++|+++.. +++|.+|+++.
T Consensus 277 ~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 277 RGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred CceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 56899999999998876 89999998864
No 238
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.14 E-value=3.3e-09 Score=104.37 Aligned_cols=209 Identities=13% Similarity=0.207 Sum_probs=148.6
Q ss_pred CCCcEEEEEECC---CCC-EEEEEeCCCcEEEEECCCCcEEEEec--cCCC---cceEEEEEeeCCCCCEEEEEeCCCcE
Q 005506 49 HQGCVNAISWNS---KGS-LLISGSDDTHINVWSYSSRKLLHSIE--TGHS---ANVFCTKFVPETSDELVVSGAGDAEV 119 (693)
Q Consensus 49 H~~~V~~l~~s~---~g~-~LaSgs~Dg~I~IWd~~~~~~~~~l~--~~h~---~~I~sv~f~p~~~~~~l~sgs~Dg~V 119 (693)
-+..++.+.|.. +|. .|+-+..+|.|.++..........+. ..-. ....++.|.+. +..++++-.+|.+
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~--~~~i~vs~s~G~~ 145 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTS--GTKIFVSDSRGSI 145 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeecc--CceEEEEcCCCcE
Confidence 456688888875 455 66777888999999876544333331 1111 12457788887 5778888889999
Q ss_pred EEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEe
Q 005506 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (693)
Q Consensus 120 ~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~ 199 (693)
.+-+..... .+.++.++.|.....-..|+-.+++++.+||.|+.+..||+|.+... +|
T Consensus 146 ~~v~~t~~~--------le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~-------------i~- 203 (339)
T KOG0280|consen 146 SGVYETEMV--------LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTF-------------IW- 203 (339)
T ss_pred EEEecceee--------eeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcce-------------ee-
Confidence 966665321 25567899999999999999889999999999999999999954421 22
Q ss_pred ccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecC-CCCCCcccccCCCCCCcccccccCccccCCCC
Q 005506 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR-MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (693)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (693)
.....|...|.+|.-+|..+.+++||+.|-.|++||.| +++|+..- .-
T Consensus 204 ---------~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~----------------------~v 252 (339)
T KOG0280|consen 204 ---------HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA----------------------KV 252 (339)
T ss_pred ---------ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC----------------------cc
Confidence 22335778899999999889999999999999999999 45444321 11
Q ss_pred ccceEEEEEcCCCC-EEEEEecCCcEEEEECCCCC
Q 005506 279 SLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 279 ~~~V~~v~fspdg~-~L~sgs~Dg~V~lwdl~~~~ 312 (693)
...|+.+.++|.-. .|++++.-+-.+|-++....
T Consensus 253 ~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~ 287 (339)
T KOG0280|consen 253 GGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKV 287 (339)
T ss_pred ccceEEEEecchhhhHHHHHHHhcCceEEEecccc
Confidence 23699999999643 33344444445666666543
No 239
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.13 E-value=1.4e-10 Score=121.84 Aligned_cols=104 Identities=18% Similarity=0.358 Sum_probs=88.9
Q ss_pred ceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 005506 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (693)
Q Consensus 41 ~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~ 120 (693)
.++....--.++|+.++|+|||++||+.|.||.++|+|+.+.+++..+ ...-+...||+|+|+ |++|++|+.|.-|.
T Consensus 281 NPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~m-kSYFGGLLCvcWSPD--GKyIvtGGEDDLVt 357 (636)
T KOG2394|consen 281 NPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVM-KSYFGGLLCVCWSPD--GKYIVTGGEDDLVT 357 (636)
T ss_pred CccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHH-HhhccceEEEEEcCC--ccEEEecCCcceEE
Confidence 344444444679999999999999999999999999999998887776 456678999999999 79999999999999
Q ss_pred EEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEec
Q 005506 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV 157 (693)
Q Consensus 121 vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp 157 (693)
||.+... +.+..-++|.+-|..++|.|
T Consensus 358 VwSf~er----------RVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 358 VWSFEER----------RVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEEeccc----------eEEEeccccccceeeEeecc
Confidence 9999864 45667789999999999973
No 240
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.12 E-value=2.4e-09 Score=104.68 Aligned_cols=149 Identities=13% Similarity=0.198 Sum_probs=102.2
Q ss_pred EEEEECCCCCEEEEEeC----------CCcEEEEECCC-CcEEEEeccCCCcceEEEEEeeCCCCCEEE--EEeCCCcEE
Q 005506 54 NAISWNSKGSLLISGSD----------DTHINVWSYSS-RKLLHSIETGHSANVFCTKFVPETSDELVV--SGAGDAEVR 120 (693)
Q Consensus 54 ~~l~~s~~g~~LaSgs~----------Dg~I~IWd~~~-~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~--sgs~Dg~V~ 120 (693)
..+.|+++|++|+.-.. -+...||-+.. ...+..+.....++|.+++|+|+ ++.|+ +|..+..|.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~--g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPN--GNEFAVIYGSMPAKVT 86 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcC--CCEEEEEEccCCcccE
Confidence 36889999987765433 12355555532 23444453445667999999999 45554 345678999
Q ss_pred EEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeC---CCcEEEEeCCCCCCCCCCCCCCcccceEE
Q 005506 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE---DGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (693)
Q Consensus 121 vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~---Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l 197 (693)
+||++. .++..+ +...+..|.|+| .+++|++++. .|.|.+||+++.+..
T Consensus 87 lyd~~~-----------~~i~~~--~~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~~~i-------------- 138 (194)
T PF08662_consen 87 LYDVKG-----------KKIFSF--GTQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKKKKI-------------- 138 (194)
T ss_pred EEcCcc-----------cEeEee--cCCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCCEEe--------------
Confidence 999972 445555 356788999999 6677777764 467999999865422
Q ss_pred EeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeC------CCcEEEEecC
Q 005506 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS------DAFARLYDRR 246 (693)
Q Consensus 198 ~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~------Dg~IriwD~r 246 (693)
. . .....++.++|+|+ |++|+++.. |..++||+..
T Consensus 139 ~-----------~--~~~~~~t~~~WsPd-Gr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 139 S-----------T--FEHSDATDVEWSPD-GRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred e-----------c--cccCcEEEEEEcCC-CCEEEEEEeccceeccccEEEEEec
Confidence 0 0 01224689999998 688888764 7889999985
No 241
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.12 E-value=2e-10 Score=132.99 Aligned_cols=105 Identities=19% Similarity=0.084 Sum_probs=95.2
Q ss_pred chhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCC
Q 005506 361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS 440 (693)
Q Consensus 361 ~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~ 440 (693)
..+..++..|+.+|+.|+ |..||..|+++|...|. +.+|.|+|.||++++ ++..|+.+|.+||+++|++
T Consensus 125 ~~a~~~k~~G~~~~~~~~-~~~Ai~~y~~al~~~p~-------~~~~~n~a~~~~~l~---~~~~Ai~~~~~al~l~p~~ 193 (615)
T TIGR00990 125 KYAAKLKEKGNKAYRNKD-FNKAIKLYSKAIECKPD-------PVYYSNRAACHNALG---DWEKVVEDTTAALELDPDY 193 (615)
T ss_pred HHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCc-------hHHHHHHHHHHHHhC---CHHHHHHHHHHHHHcCCCC
Confidence 456789999999999999 99999999999998874 468999999999975 4999999999999999999
Q ss_pred cchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCch
Q 005506 441 FRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (693)
Q Consensus 441 ~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~ 476 (693)
.||++|+|.++..+|++++|+.++..+..+++.+..
T Consensus 194 ~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~ 229 (615)
T TIGR00990 194 SKALNRRANAYDGLGKYADALLDLTASCIIDGFRNE 229 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccH
Confidence 999999999999999999999999988877765543
No 242
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.11 E-value=8.4e-10 Score=102.61 Aligned_cols=103 Identities=13% Similarity=-0.041 Sum_probs=95.2
Q ss_pred HHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhh
Q 005506 366 LVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHL 445 (693)
Q Consensus 366 lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~KA~~ 445 (693)
+...|...+..|+ |.+|+..|.+++...|.. ...|.++|.++.+.+. +.+|+..+.+|++++|+++.+++
T Consensus 27 ~~~~g~~~~~~g~-~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~g~---~~~A~~~y~~Al~l~p~~~~a~~ 96 (144)
T PRK15359 27 VYASGYASWQEGD-YSRAVIDFSWLVMAQPWS------WRAHIALAGTWMMLKE---YTTAINFYGHALMLDASHPEPVY 96 (144)
T ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHHhh---HHHHHHHHHHHHhcCCCCcHHHH
Confidence 3456788899999 999999999999999887 7899999999999654 99999999999999999999999
Q ss_pred hHHHHHHHhccHHHHHHHHHHHcccCCCCchhH
Q 005506 446 YMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA 478 (693)
Q Consensus 446 r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~ 478 (693)
++|.|+..+|++++|++.|++++++.|++....
T Consensus 97 ~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~ 129 (144)
T PRK15359 97 QTGVCLKMMGEPGLAREAFQTAIKMSYADASWS 129 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 999999999999999999999999999997654
No 243
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.08 E-value=2.5e-09 Score=105.19 Aligned_cols=206 Identities=15% Similarity=0.049 Sum_probs=141.6
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEE--EeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCC
Q 005506 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH--SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 130 (693)
Q Consensus 53 V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~--~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~ 130 (693)
-.++.|++.+..++++-.+|.+.+-+...+.... .. .+|.-+++-.+|+... .+++.+|+.|+.+..||++.+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~w-k~He~E~Wta~f~~~~-pnlvytGgDD~~l~~~D~R~p~-- 199 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTW-KVHEFEAWTAKFSDKE-PNLVYTGGDDGSLSCWDIRIPK-- 199 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccc-cccceeeeeeecccCC-CceEEecCCCceEEEEEecCCc--
Confidence 4578899999999999999999966654443333 45 7899999999999875 6899999999999999999542
Q ss_pred CCCCCCCCCcee-eccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeec
Q 005506 131 GLDDNAITPSAL-YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA 209 (693)
Q Consensus 131 ~~~~~~~~~~~~-~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~ 209 (693)
+.+.. .+-|...|.+|.-+|..+.+|+||+.|-.|++||+|....+ +.
T Consensus 200 -------~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP------------------------l~ 248 (339)
T KOG0280|consen 200 -------TFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP------------------------LF 248 (339)
T ss_pred -------ceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc------------------------cc
Confidence 22322 55689999999999989999999999999999999965422 00
Q ss_pred CCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcC
Q 005506 210 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP 289 (693)
Q Consensus 210 ~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fsp 289 (693)
.. .-...|..+.++|.....+++++.-.-++|-+....... + ...+.....|.+ -+..-.|..
T Consensus 249 ~~-~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e--~-------------~~~~~s~~~hdS-l~YG~DWd~ 311 (339)
T KOG0280|consen 249 KA-KVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLE--F-------------QIVLPSDKIHDS-LCYGGDWDS 311 (339)
T ss_pred cC-ccccceEEEEecchhhhHHHHHHHhcCceEEEecccccc--h-------------heeeeccccccc-eeecccccc
Confidence 00 112578889999875555666666666777777654321 1 000111122332 244445555
Q ss_pred CCCEEEEEec-CCcEE-EEECCC
Q 005506 290 NGEEVLLSYS-GEHVY-LMDVNH 310 (693)
Q Consensus 290 dg~~L~sgs~-Dg~V~-lwdl~~ 310 (693)
...+|++++. |..++ +|-.-+
T Consensus 312 ~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 312 KDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred ccceeeeeeccccceeeeeeecc
Confidence 5566777664 66655 665444
No 244
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=3.8e-09 Score=116.82 Aligned_cols=202 Identities=12% Similarity=0.134 Sum_probs=123.8
Q ss_pred CCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCC---CcEEEEEcCCCCCCCCCCCCCCCceeeccCC
Q 005506 71 DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQCHT 147 (693)
Q Consensus 71 Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~D---g~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~ 147 (693)
+..|.|||..... ...+ ..|...+.+.+|+|+ ++.|+.++.+ ..|++||+..+.. ..+..+.+|
T Consensus 183 ~~~i~i~d~dg~~-~~~l-t~~~~~v~~p~wSPD--G~~la~~s~~~~~~~i~i~dl~tg~~--------~~l~~~~g~- 249 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIV-NRSSQPLMSPAWSPD--GSKLAYVSFENKKSQLVVHDLRSGAR--------KVVASFRGH- 249 (429)
T ss_pred eEEEEEECCCCCC-ceEe-ccCCCccccceEcCC--CCEEEEEEecCCCcEEEEEeCCCCce--------EEEecCCCc-
Confidence 4689999987554 4455 578888999999999 6778777643 3699999975421 122223333
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCcEEEE--eCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcC
Q 005506 148 RRVKKLAVEVGNPHVVWSASEDGTLRQH--DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS 225 (693)
Q Consensus 148 ~~V~~la~sp~~~~~l~Sgs~Dg~V~lw--Dlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp 225 (693)
...++|+|++..++++.+.+|.+.+| |+.++.. ..+. .+...+....|+|
T Consensus 250 --~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-----------------------~~lt---~~~~~~~~~~wSp 301 (429)
T PRK01742 250 --NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-----------------------SQLT---SGAGNNTEPSWSP 301 (429)
T ss_pred --cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-----------------------Eeec---cCCCCcCCEEECC
Confidence 34689999554444455678877666 4433220 0111 1223466789999
Q ss_pred CCCcEEE-EEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEE
Q 005506 226 TRPHLLL-VGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVY 304 (693)
Q Consensus 226 ~~~~~La-tgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~ 304 (693)
+ +..|+ ++..++.+.||++...... .... .+.. ..+.|+|+|++|+..+.+ .+.
T Consensus 302 D-G~~i~f~s~~~g~~~I~~~~~~~~~------------~~~l--------~~~~---~~~~~SpDG~~ia~~~~~-~i~ 356 (429)
T PRK01742 302 D-GQSILFTSDRSGSPQVYRMSASGGG------------ASLV--------GGRG---YSAQISADGKTLVMINGD-NVV 356 (429)
T ss_pred C-CCEEEEEECCCCCceEEEEECCCCC------------eEEe--------cCCC---CCccCCCCCCEEEEEcCC-CEE
Confidence 8 45554 5556788899987642110 0000 0111 246799999999888775 466
Q ss_pred EEECCCCCcceEEeecCCCceeEEeccCCCcccccC
Q 005506 305 LMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQP 340 (693)
Q Consensus 305 lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~ 340 (693)
+||+.++...... . ........|+|+...+.+..
T Consensus 357 ~~Dl~~g~~~~lt-~-~~~~~~~~~sPdG~~i~~~s 390 (429)
T PRK01742 357 KQDLTSGSTEVLS-S-TFLDESPSISPNGIMIIYSS 390 (429)
T ss_pred EEECCCCCeEEec-C-CCCCCCceECCCCCEEEEEE
Confidence 7999886533222 1 22234566888776665544
No 245
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.05 E-value=2.5e-08 Score=110.01 Aligned_cols=204 Identities=14% Similarity=0.125 Sum_probs=126.9
Q ss_pred eeEEeccCCCcEEEEEECCCCCEEEEEeCC---CcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEE-EEEeCCC
Q 005506 42 QERELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGDA 117 (693)
Q Consensus 42 ~~~~l~gH~~~V~~l~~s~~g~~LaSgs~D---g~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l-~sgs~Dg 117 (693)
..+.+..+...+.+..|+|+|++||.++.+ ..|.+||+.+++.... ..+.+.+.+++|+|+ ++.| ++.+.++
T Consensus 181 ~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~--~~~~~~~~~~~~spD--g~~l~~~~~~~~ 256 (417)
T TIGR02800 181 NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV--ASFPGMNGAPAFSPD--GSKLAVSLSKDG 256 (417)
T ss_pred CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe--ecCCCCccceEECCC--CCEEEEEECCCC
Confidence 345566677789999999999999987654 4799999988765432 245566778999998 4544 4555554
Q ss_pred --cEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEeCCCCCCCCCCCCCCccc
Q 005506 118 --EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQEC 193 (693)
Q Consensus 118 --~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg--~V~lwDlr~~~~~~~~~~~~~~~ 193 (693)
.|++|++.... ...+..+........|+|++..++++...++ .|.++|+.++..
T Consensus 257 ~~~i~~~d~~~~~-----------~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~----------- 314 (417)
T TIGR02800 257 NPDIYVMDLDGKQ-----------LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV----------- 314 (417)
T ss_pred CccEEEEECCCCC-----------EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-----------
Confidence 58888887531 2233334444556789995544444544444 466666654321
Q ss_pred ceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCC---cEEEEecCCCCCCcccccCCCCCCcccccccC
Q 005506 194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA---FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM 270 (693)
Q Consensus 194 ~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg---~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~ 270 (693)
..+.. +...+....|+|+ +.+|+.++.++ .|.+||+.+.... .+
T Consensus 315 ------------~~l~~---~~~~~~~~~~spd-g~~i~~~~~~~~~~~i~~~d~~~~~~~--------------~l--- 361 (417)
T TIGR02800 315 ------------RRLTF---RGGYNASPSWSPD-GDLIAFVHREGGGFNIAVMDLDGGGER--------------VL--- 361 (417)
T ss_pred ------------EEeec---CCCCccCeEECCC-CCEEEEEEccCCceEEEEEeCCCCCeE--------------Ec---
Confidence 01110 1123456789997 57777777765 7888888753210 00
Q ss_pred ccccCCCCccceEEEEEcCCCCEEEEEecCC---cEEEEECCC
Q 005506 271 HLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE---HVYLMDVNH 310 (693)
Q Consensus 271 ~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg---~V~lwdl~~ 310 (693)
.... ......|+|+|++|+..+.++ .+++++...
T Consensus 362 --~~~~----~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g 398 (417)
T TIGR02800 362 --TDTG----LDESPSFAPNGRMILYATTRGGRGVLGLVSTDG 398 (417)
T ss_pred --cCCC----CCCCceECCCCCEEEEEEeCCCcEEEEEEECCC
Confidence 0000 123468999999998877743 456666443
No 246
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=8.2e-09 Score=105.22 Aligned_cols=165 Identities=15% Similarity=0.247 Sum_probs=127.5
Q ss_pred cEEEEEECC-CCCEEEEEeCC--CcEEEEECCCCcEEEEecc--------CCCcceEEEEEeeCCCCCEEEEEeCCCcEE
Q 005506 52 CVNAISWNS-KGSLLISGSDD--THINVWSYSSRKLLHSIET--------GHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (693)
Q Consensus 52 ~V~~l~~s~-~g~~LaSgs~D--g~I~IWd~~~~~~~~~l~~--------~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~ 120 (693)
.+..+.-++ +..++|+|+.. ..+.|||++..+.+..-.. .-.-.++++.|.|......|||+..-+.||
T Consensus 150 g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR 229 (412)
T KOG3881|consen 150 GLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVR 229 (412)
T ss_pred ceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEE
Confidence 344454444 34577789988 7899999987755433211 122356789999885568999999999999
Q ss_pred EEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEec
Q 005506 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (693)
Q Consensus 121 vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~ 200 (693)
+||.+... .|+..+.--..+|+++...| ++++|.+|..-|.+..||+|.+...
T Consensus 230 ~YDt~~qR---------RPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl~----------------- 282 (412)
T KOG3881|consen 230 LYDTRHQR---------RPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKLL----------------- 282 (412)
T ss_pred EecCcccC---------cceeEeccccCcceeeeecC-CCcEEEEecccchhheecccCceee-----------------
Confidence 99999542 67888888889999999999 7789999999999999999987532
Q ss_pred cCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCC
Q 005506 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL 251 (693)
Q Consensus 201 ~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~ 251 (693)
.....+....|++|..+|. ..++++++-|.+|||||+.+.+++
T Consensus 283 -------g~~~kg~tGsirsih~hp~-~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 283 -------GCGLKGITGSIRSIHCHPT-HPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred -------ccccCCccCCcceEEEcCC-CceEEeeccceeEEEeecccchhh
Confidence 1112244568899999997 579999999999999999985544
No 247
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.01 E-value=1.3e-08 Score=115.06 Aligned_cols=195 Identities=11% Similarity=0.135 Sum_probs=147.6
Q ss_pred EECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEE---EeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCC
Q 005506 57 SWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK---FVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD 133 (693)
Q Consensus 57 ~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~---f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~ 133 (693)
.+......++.+..+..+.|||...+.....+...-.....++. ++++ .-++++|+.-+.|.+|+.....
T Consensus 94 ~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~--~~~i~~gsv~~~iivW~~~~dn----- 166 (967)
T KOG0974|consen 94 KLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAE--ELYIASGSVFGEIIVWKPHEDN----- 166 (967)
T ss_pred chhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCc--EEEEEeccccccEEEEeccccC-----
Confidence 33345678888888999999999887776666322222222222 2333 3588999999999999998432
Q ss_pred CCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCC
Q 005506 134 DNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPK 213 (693)
Q Consensus 134 ~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 213 (693)
.+. .+.+|.+.|.++.++- ++.+++|.|+|.++|+|++.+.+... ...-+
T Consensus 167 ----~p~-~l~GHeG~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~~~~------------------------~~~fg 216 (967)
T KOG0974|consen 167 ----KPI-RLKGHEGSIFSIVTSL-DGRYIASVSDDRSIRLWPIDSREVLG------------------------CTGFG 216 (967)
T ss_pred ----Ccc-eecccCCceEEEEEcc-CCcEEEEEecCcceeeeecccccccC------------------------ccccc
Confidence 223 5789999999999998 77999999999999999999876432 11225
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCE
Q 005506 214 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEE 293 (693)
Q Consensus 214 ~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~ 293 (693)
|...+..+.|+|. .++|++.|.+.++|+..-. .+..+ .+|....|..++.+++...
T Consensus 217 HsaRvw~~~~~~n---~i~t~gedctcrvW~~~~~--------------~l~~y-------~~h~g~~iw~~~~~~~~~~ 272 (967)
T KOG0974|consen 217 HSARVWACCFLPN---RIITVGEDCTCRVWGVNGT--------------QLEVY-------DEHSGKGIWKIAVPIGVII 272 (967)
T ss_pred ccceeEEEEeccc---eeEEeccceEEEEEecccc--------------eehhh-------hhhhhcceeEEEEcCCceE
Confidence 7788999999995 8999999999999965532 12222 4455667999999999999
Q ss_pred EEEEecCCcEEEEECCCCC
Q 005506 294 VLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 294 L~sgs~Dg~V~lwdl~~~~ 312 (693)
+++++.|+.+++||+....
T Consensus 273 ~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 273 KVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred EEeeccCcchhhhhhhccc
Confidence 9999999999999998743
No 248
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.01 E-value=8.9e-09 Score=100.73 Aligned_cols=112 Identities=10% Similarity=0.259 Sum_probs=85.4
Q ss_pred CCCcEEEEEECCCCCEEEEE--eCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCC---CcEEEEE
Q 005506 49 HQGCVNAISWNSKGSLLISG--SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFN 123 (693)
Q Consensus 49 H~~~V~~l~~s~~g~~LaSg--s~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~D---g~V~vwd 123 (693)
+.++|.+++|+|+|+.||+. ..++.|.|||+. ++.+..+ +...+..|.|+|+ |++|++|+.+ |.|.+||
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~---~~~~~n~i~wsP~--G~~l~~~g~~n~~G~l~~wd 131 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSF---GTQPRNTISWSPD--GRFLVLAGFGNLNGDLEFWD 131 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEee---cCCCceEEEECCC--CCEEEEEEccCCCcEEEEEE
Confidence 45679999999999987654 467899999996 6777777 3456789999999 7899988754 5699999
Q ss_pred cCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeC------CCcEEEEeCCC
Q 005506 124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE------DGTLRQHDFRQ 179 (693)
Q Consensus 124 l~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~------Dg~V~lwDlr~ 179 (693)
++.. +.+.... ...++.++|+| ++.+|++++. |..++||+...
T Consensus 132 ~~~~----------~~i~~~~--~~~~t~~~WsP-dGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 132 VRKK----------KKISTFE--HSDATDVEWSP-DGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred CCCC----------EEeeccc--cCcEEEEEEcC-CCCEEEEEEeccceeccccEEEEEecC
Confidence 9953 3344433 34578999999 5566666653 78899999853
No 249
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.99 E-value=2.1e-09 Score=126.37 Aligned_cols=194 Identities=15% Similarity=0.212 Sum_probs=157.1
Q ss_pred eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcC
Q 005506 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (693)
Q Consensus 46 l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~ 125 (693)
++.|-..|.++.=+|...+.+||+.||.|++|....++.+..+.+.-...|+.+.|+.. |+.+..+..||.+.+|.+.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~q--Gnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQ--GNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhccc--CCceeeeccCCceeecccC
Confidence 34456789999999988999999999999999999999888887766699999999988 7899999999999999998
Q ss_pred CCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEe---CCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccC
Q 005506 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS---EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (693)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs---~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~ 202 (693)
. ++....++|.....++.|-. .++++++ .++.+.+||.--....
T Consensus 2282 p-----------k~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~------------------- 2328 (2439)
T KOG1064|consen 2282 P-----------KPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMN------------------- 2328 (2439)
T ss_pred C-----------cceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCccc-------------------
Confidence 3 67889999999999999964 5677775 4689999997543211
Q ss_pred CceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccce
Q 005506 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL 282 (693)
Q Consensus 203 ~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 282 (693)
.+. +..|...++++++-|. ..+|++|+.+|.|.+||++..+....++ .
T Consensus 2329 ----s~v-~~~H~~gaT~l~~~P~-~qllisggr~G~v~l~D~rqrql~h~~~--------------------------~ 2376 (2439)
T KOG1064|consen 2329 ----SLV-HTCHDGGATVLAYAPK-HQLLISGGRKGEVCLFDIRQRQLRHTFQ--------------------------A 2376 (2439)
T ss_pred ----cee-eeecCCCceEEEEcCc-ceEEEecCCcCcEEEeehHHHHHHHHhh--------------------------h
Confidence 001 1357778999999996 6899999999999999999654332221 1
Q ss_pred EEEEEcCCCCEEEEEecCCcEEEEECCCC
Q 005506 283 THVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (693)
Q Consensus 283 ~~v~fspdg~~L~sgs~Dg~V~lwdl~~~ 311 (693)
++ ...++++|+..|.|+||++...
T Consensus 2377 ----~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2377 ----LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred ----hh-hhheeeccCcccceEEEEcccc
Confidence 33 5568899999999999999984
No 250
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.99 E-value=4.2e-09 Score=96.62 Aligned_cols=121 Identities=17% Similarity=0.008 Sum_probs=105.3
Q ss_pred cCcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccC
Q 005506 358 TGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRID 437 (693)
Q Consensus 358 ~~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~ 437 (693)
..+.....+...|..++..|+ |..|+..+.+++...|.. ...+.++|.+|++.+. +.+|+..+.++++++
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGR-YDEALKLFQLLAAYDPYN------SRYWLGLAACCQMLKE---YEEAIDAYALAAALD 81 (135)
T ss_pred CChhhHHHHHHHHHHHHHccc-HHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcC
Confidence 344455667788899999999 999999999999988876 7889999999999755 999999999999999
Q ss_pred CCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHHHHHHH
Q 005506 438 SSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHI 488 (693)
Q Consensus 438 p~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l~~~i 488 (693)
|.+...++.+|.++..+|++++|+..++++++++|++.......+++.+.+
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 132 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAML 132 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999877655555554443
No 251
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.99 E-value=1.2e-08 Score=108.30 Aligned_cols=201 Identities=15% Similarity=0.226 Sum_probs=142.7
Q ss_pred EEEECC-CCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCC
Q 005506 55 AISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD 133 (693)
Q Consensus 55 ~l~~s~-~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~ 133 (693)
.|+++. +..+++.|+. ..|.=++++.|..+..+ ....+.+++|..++. ..+|++|+.+|.|-.||.+..+....
T Consensus 138 Dm~y~~~scDly~~gsg-~evYRlNLEqGrfL~P~-~~~~~~lN~v~in~~--hgLla~Gt~~g~VEfwDpR~ksrv~~- 212 (703)
T KOG2321|consen 138 DMKYHKPSCDLYLVGSG-SEVYRLNLEQGRFLNPF-ETDSGELNVVSINEE--HGLLACGTEDGVVEFWDPRDKSRVGT- 212 (703)
T ss_pred cccccCCCccEEEeecC-cceEEEEcccccccccc-ccccccceeeeecCc--cceEEecccCceEEEecchhhhhhee-
Confidence 444443 3344444443 46888899999999888 456688999999998 47999999999999999986432110
Q ss_pred CCCCCCceeeccCC-----CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeee
Q 005506 134 DNAITPSALYQCHT-----RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 208 (693)
Q Consensus 134 ~~~~~~~~~~~~h~-----~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 208 (693)
.........|. ..|+++.|.. ++-.+++|..+|.|.|||+|+.++. +
T Consensus 213 ---l~~~~~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl------------------------~ 264 (703)
T KOG2321|consen 213 ---LDAASSVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPL------------------------L 264 (703)
T ss_pred ---eecccccCCCccccccCcceEEEecC-CceeEEeeccCCcEEEEEcccCCce------------------------e
Confidence 01111222233 3499999986 5788999999999999999998743 1
Q ss_pred cCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEc
Q 005506 209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS 288 (693)
Q Consensus 209 ~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fs 288 (693)
.--.....+|..+.|.+.+..--++......++|||-.++++...+. ....++.+++-
T Consensus 265 ~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE----------------------pt~~lND~C~~ 322 (703)
T KOG2321|consen 265 VKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIE----------------------PTSDLNDFCFV 322 (703)
T ss_pred ecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeecc----------------------ccCCcCceeee
Confidence 11113356888999988644445555667889999999887654431 11148889999
Q ss_pred CCCCEEEEEecCCcEEEEECCC
Q 005506 289 PNGEEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 289 pdg~~L~sgs~Dg~V~lwdl~~ 310 (693)
|++-.++++-.+..+..|=+..
T Consensus 323 p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 323 PGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred cCCceEEEecCCCcceeEEccc
Confidence 9999999998887777666655
No 252
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.98 E-value=9.7e-09 Score=103.05 Aligned_cols=244 Identities=18% Similarity=0.193 Sum_probs=173.8
Q ss_pred cccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEE-CCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCC
Q 005506 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS-YSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD 116 (693)
Q Consensus 38 ~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd-~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~D 116 (693)
.+..+...++||.+.|+....-|...-+++.+.|.+++||- .+.++.-..+......++.++.+.++. ..|+.|-..
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~--~~L~vg~~n 89 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSES--RRLYVGQDN 89 (404)
T ss_pred cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccc--eEEEEEEec
Confidence 34555667899999999999888888899999999999994 455666666655667889999999984 899999999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCC-------CC---
Q 005506 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP-------PA--- 186 (693)
Q Consensus 117 g~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~-------~~--- 186 (693)
|+|.-+.+... .++....+.+.+|..+|..+-|+- .+.++++.+.|..+.-.-.+.+.... ..
T Consensus 90 gtvtefs~sed------fnkm~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~ 162 (404)
T KOG1409|consen 90 GTVTEFALSED------FNKMTFLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQ 162 (404)
T ss_pred ceEEEEEhhhh------hhhcchhhhhhhhhcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEeeccCCCCc
Confidence 99999987642 222356778889999999999987 66788899998877433334333210 00
Q ss_pred ------CCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCC
Q 005506 187 ------GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP 260 (693)
Q Consensus 187 ------~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~ 260 (693)
..+..........+.......+....+|...+++++|.|. ..+|.+|..|..|.+||+--.+-.
T Consensus 163 ~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~-~~~LfSg~~d~~vi~wdigg~~g~--------- 232 (404)
T KOG1409|consen 163 FDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPG-QRLLFSGASDHSVIMWDIGGRKGT--------- 232 (404)
T ss_pred eeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCC-CcEEEeccccCceEEEeccCCcce---------
Confidence 0000111112222222333345556678889999999996 689999999999999998743211
Q ss_pred CCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCC
Q 005506 261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (693)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~ 311 (693)
.+.. .+|.+ .|..+..-+--+.|++++.||.|-+||++..
T Consensus 233 -~~el---------~gh~~-kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 233 -AYEL---------QGHND-KVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred -eeee---------ccchh-hhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 0111 22333 3666776777788999999999999999984
No 253
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.98 E-value=7.4e-08 Score=106.81 Aligned_cols=203 Identities=15% Similarity=0.138 Sum_probs=127.8
Q ss_pred CcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeC---CCcEEEEEcCCCCCCCCCCCCCCCceeeccCCC
Q 005506 72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR 148 (693)
Q Consensus 72 g~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~---Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~ 148 (693)
..|.+||.... ....+ +.|...+.+.+|+|+ |+.|+..+. +..|.+||+..+. ...+..+..
T Consensus 182 ~~l~~~d~dg~-~~~~l-t~~~~~v~~p~wSpD--G~~lay~s~~~g~~~i~~~dl~~g~-----------~~~l~~~~g 246 (435)
T PRK05137 182 KRLAIMDQDGA-NVRYL-TDGSSLVLTPRFSPN--RQEITYMSYANGRPRVYLLDLETGQ-----------RELVGNFPG 246 (435)
T ss_pred eEEEEECCCCC-CcEEE-ecCCCCeEeeEECCC--CCEEEEEEecCCCCEEEEEECCCCc-----------EEEeecCCC
Confidence 36888998544 44455 567889999999999 577776653 4689999997542 223444566
Q ss_pred CeEEEEEecCCCcEEEEEeCCCc--EEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCC
Q 005506 149 RVKKLAVEVGNPHVVWSASEDGT--LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST 226 (693)
Q Consensus 149 ~V~~la~sp~~~~~l~Sgs~Dg~--V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~ 226 (693)
.+...+|+|++..++++.+.+|. |.+||+.++... .+. .+........|+|+
T Consensus 247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-----------------------~Lt---~~~~~~~~~~~spD 300 (435)
T PRK05137 247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-----------------------RLT---DSPAIDTSPSYSPD 300 (435)
T ss_pred cccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE-----------------------Ecc---CCCCccCceeEcCC
Confidence 77888999966666667777776 666677654311 111 11123456789998
Q ss_pred CCcEEEEEe-CCC--cEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecC---
Q 005506 227 RPHLLLVGG-SDA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG--- 300 (693)
Q Consensus 227 ~~~~Latgs-~Dg--~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~D--- 300 (693)
++.|+..+ .+| .|++||+...... .+. . . ...+....|+|+|++|+....+
T Consensus 301 -G~~i~f~s~~~g~~~Iy~~d~~g~~~~--------------~lt-----~--~-~~~~~~~~~SpdG~~ia~~~~~~~~ 357 (435)
T PRK05137 301 -GSQIVFESDRSGSPQLYVMNADGSNPR--------------RIS-----F--G-GGRYSTPVWSPRGDLIAFTKQGGGQ 357 (435)
T ss_pred -CCEEEEEECCCCCCeEEEEECCCCCeE--------------Eee-----c--C-CCcccCeEECCCCCEEEEEEcCCCc
Confidence 56666555 333 5777786643211 110 0 0 1135568899999999877653
Q ss_pred CcEEEEECCCCCcceEEeecCCCceeEEeccCCCcccccC
Q 005506 301 EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQP 340 (693)
Q Consensus 301 g~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~ 340 (693)
..|++||+.++.. . ............|+|+...+.+..
T Consensus 358 ~~i~~~d~~~~~~-~-~lt~~~~~~~p~~spDG~~i~~~~ 395 (435)
T PRK05137 358 FSIGVMKPDGSGE-R-ILTSGFLVEGPTWAPNGRVIMFFR 395 (435)
T ss_pred eEEEEEECCCCce-E-eccCCCCCCCCeECCCCCEEEEEE
Confidence 3789999866432 2 222233455677888877665543
No 254
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.97 E-value=3.2e-08 Score=109.57 Aligned_cols=203 Identities=11% Similarity=0.092 Sum_probs=124.3
Q ss_pred CcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeC---CCcEEEEEcCCCCCCCCCCCCCCCceeeccCCC
Q 005506 72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR 148 (693)
Q Consensus 72 g~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~---Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~ 148 (693)
..|.|||.... ....+ ..+...+.+.+|+|+ ++.|+..+. ...|.+||+..+. ...+..+..
T Consensus 184 ~~l~i~D~~g~-~~~~l-t~~~~~v~~p~wSpD--g~~la~~s~~~~~~~l~~~dl~~g~-----------~~~l~~~~g 248 (433)
T PRK04922 184 YALQVADSDGY-NPQTI-LRSAEPILSPAWSPD--GKKLAYVSFERGRSAIYVQDLATGQ-----------RELVASFRG 248 (433)
T ss_pred EEEEEECCCCC-CceEe-ecCCCccccccCCCC--CCEEEEEecCCCCcEEEEEECCCCC-----------EEEeccCCC
Confidence 35899998644 44445 467778999999999 677777664 3469999997542 122223344
Q ss_pred CeEEEEEecCCCcEEEEEeCCC--cEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCC
Q 005506 149 RVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST 226 (693)
Q Consensus 149 ~V~~la~sp~~~~~l~Sgs~Dg--~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~ 226 (693)
....++|+|++..++++.+.+| .|.+||+.++... .+. .+.......+|+|+
T Consensus 249 ~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-----------------------~lt---~~~~~~~~~~~spD 302 (433)
T PRK04922 249 INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-----------------------RLT---NHFGIDTEPTWAPD 302 (433)
T ss_pred CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-----------------------ECc---cCCCCccceEECCC
Confidence 4557899996666666777666 4888888765311 111 11122356789998
Q ss_pred CCcEEEEEe-CCCc--EEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCC--
Q 005506 227 RPHLLLVGG-SDAF--ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE-- 301 (693)
Q Consensus 227 ~~~~Latgs-~Dg~--IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg-- 301 (693)
++.|+.++ .+|. |+++|+..++... + ++ .+. ....++|+|+|++|+..+.++
T Consensus 303 -G~~l~f~sd~~g~~~iy~~dl~~g~~~~-----------l-t~-------~g~---~~~~~~~SpDG~~Ia~~~~~~~~ 359 (433)
T PRK04922 303 -GKSIYFTSDRGGRPQIYRVAASGGSAER-----------L-TF-------QGN---YNARASVSPDGKKIAMVHGSGGQ 359 (433)
T ss_pred -CCEEEEEECCCCCceEEEEECCCCCeEE-----------e-ec-------CCC---CccCEEECCCCCEEEEEECCCCc
Confidence 56666555 4555 5556655432100 0 00 111 234689999999998766533
Q ss_pred -cEEEEECCCCCcceEEeecCCCceeEEeccCCCcccccC
Q 005506 302 -HVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQP 340 (693)
Q Consensus 302 -~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~ 340 (693)
.|++||+.++... ....+.......|+|+...+.+..
T Consensus 360 ~~I~v~d~~~g~~~--~Lt~~~~~~~p~~spdG~~i~~~s 397 (433)
T PRK04922 360 YRIAVMDLSTGSVR--TLTPGSLDESPSFAPNGSMVLYAT 397 (433)
T ss_pred eeEEEEECCCCCeE--ECCCCCCCCCceECCCCCEEEEEE
Confidence 6999999886432 223333344567888776665443
No 255
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.97 E-value=9.9e-08 Score=105.74 Aligned_cols=203 Identities=12% Similarity=0.086 Sum_probs=123.8
Q ss_pred eEEeccCCCcEEEEEECCCCCEEEEEeCC---CcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEE-EEeCCC-
Q 005506 43 ERELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV-SGAGDA- 117 (693)
Q Consensus 43 ~~~l~gH~~~V~~l~~s~~g~~LaSgs~D---g~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~-sgs~Dg- 117 (693)
.+.+..|...+....|+|+|+.|+..+.+ ..|.+|++.+++... + ....+.+....|+|+ |+.|+ +...++
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l-~~~~g~~~~~~~SpD--G~~la~~~~~~g~ 266 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-I-TNFEGLNGAPAWSPD--GSKLAFVLSKDGN 266 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-c-cCCCCCcCCeEECCC--CCEEEEEEccCCC
Confidence 45566677889999999999999877644 358999998876543 3 233445667899999 56555 555555
Q ss_pred -cEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCc--EEEEeCCCCCCCCCCCCCCcccc
Q 005506 118 -EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT--LRQHDFRQGSSCPPAGSSHQECR 194 (693)
Q Consensus 118 -~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~--V~lwDlr~~~~~~~~~~~~~~~~ 194 (693)
.|.+||+.... ...+..+........|+|++..++++...+|. |.++|+.+++..
T Consensus 267 ~~Iy~~d~~~~~-----------~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~----------- 324 (430)
T PRK00178 267 PEIYVMDLASRQ-----------LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE----------- 324 (430)
T ss_pred ceEEEEECCCCC-----------eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-----------
Confidence 57777887532 22333445556678899965555555545554 555666544310
Q ss_pred eEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeC-CC--cEEEEecCCCCCCcccccCCCCCCcccccccCc
Q 005506 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-DA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 271 (693)
Q Consensus 195 ~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~-Dg--~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (693)
.+... . .......|+|+ ++.|+..+. ++ .|.+||+.++... .+..
T Consensus 325 ------------~lt~~-~--~~~~~~~~Spd-g~~i~~~~~~~~~~~l~~~dl~tg~~~--------------~lt~-- 372 (430)
T PRK00178 325 ------------RVTFV-G--NYNARPRLSAD-GKTLVMVHRQDGNFHVAAQDLQRGSVR--------------ILTD-- 372 (430)
T ss_pred ------------EeecC-C--CCccceEECCC-CCEEEEEEccCCceEEEEEECCCCCEE--------------EccC--
Confidence 11000 0 11234679998 566665543 33 4778888764311 0000
Q ss_pred cccCCCCccceEEEEEcCCCCEEEEEecC---CcEEEEECCC
Q 005506 272 LSEHGRSSLHLTHVTFSPNGEEVLLSYSG---EHVYLMDVNH 310 (693)
Q Consensus 272 ~~~~~~~~~~V~~v~fspdg~~L~sgs~D---g~V~lwdl~~ 310 (693)
.. ......|+|||++|+..+.+ ..|+++++..
T Consensus 373 ----~~---~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 373 ----TS---LDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred ----CC---CCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 00 01235899999999877653 3578888865
No 256
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.96 E-value=3.5e-10 Score=114.07 Aligned_cols=106 Identities=25% Similarity=0.167 Sum_probs=98.0
Q ss_pred cCcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccC
Q 005506 358 TGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRID 437 (693)
Q Consensus 358 ~~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~ 437 (693)
.-.+.+...+.++.+++..|. +..||+.|+.||.+.|.. +++|.+||.+++|++. ..+||+||..||+|+
T Consensus 109 e~~eqa~e~k~~A~eAln~G~-~~~ai~~~t~ai~lnp~~------a~l~~kr~sv~lkl~k---p~~airD~d~A~ein 178 (377)
T KOG1308|consen 109 EMMDQANDKKVQASEALNDGE-FDTAIELFTSAIELNPPL------AILYAKRASVFLKLKK---PNAAIRDCDFAIEIN 178 (377)
T ss_pred HHHHHHHHHHHHHHHHhcCcc-hhhhhcccccccccCCch------hhhcccccceeeeccC---CchhhhhhhhhhccC
Confidence 345566788888899999999 999999999999999887 8999999999999887 889999999999999
Q ss_pred CCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCC
Q 005506 438 SSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPS 473 (693)
Q Consensus 438 p~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~ 473 (693)
|+..|.|--|+.|...||.+++|..+|..+.+++-+
T Consensus 179 ~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 179 PDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred cccccccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999988654
No 257
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.95 E-value=5e-09 Score=96.33 Aligned_cols=116 Identities=11% Similarity=-0.120 Sum_probs=101.2
Q ss_pred ccccccccccccC-cchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHH
Q 005506 347 QTNIRVRGEVATG-LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQM 425 (693)
Q Consensus 347 ~~~~~~~~~~~~~-~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~ 425 (693)
..|..+..-.... .+..+.+-..|...+..|+ |.+|...|.-+..+.|.+ +..|.|.++|+-.++. +.+
T Consensus 18 ~~Ggsl~~l~~~~~~~~l~~lY~~A~~ly~~G~-l~~A~~~f~~L~~~Dp~~------~~y~~gLG~~~Q~~g~---~~~ 87 (157)
T PRK15363 18 RRGGSLRMLLDDDVTQPLNTLYRYAMQLMEVKE-FAGAARLFQLLTIYDAWS------FDYWFRLGECCQAQKH---WGE 87 (157)
T ss_pred HcCCcHHHHHCCChHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHHhh---HHH
Confidence 3343333333334 5677889999999999999 999999999999999887 8899999999998655 999
Q ss_pred HHHhHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCC
Q 005506 426 AIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDP 472 (693)
Q Consensus 426 Al~Dc~~Al~l~p~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p 472 (693)
||.-..+|+.|+|+++.+++..|.|++.+|+.++|.+.|+.++...-
T Consensus 88 AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 88 AIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999998763
No 258
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.93 E-value=1.5e-07 Score=104.50 Aligned_cols=221 Identities=12% Similarity=0.097 Sum_probs=123.4
Q ss_pred EeccCCCcEEEEEECCCCCEEEEEeCC-C--cEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEE-EEEeCCCc--
Q 005506 45 ELEGHQGCVNAISWNSKGSLLISGSDD-T--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGDAE-- 118 (693)
Q Consensus 45 ~l~gH~~~V~~l~~s~~g~~LaSgs~D-g--~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l-~sgs~Dg~-- 118 (693)
.+..+...+.+..|+|+|+.|+..+.+ + .|.+||+.+++... + ....+.....+|+|+ ++.| ++...++.
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-l-t~~~g~~~~~~wSPD--G~~La~~~~~~g~~~ 287 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-V-TSFPGINGAPRFSPD--GKKLALVLSKDGQPE 287 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-e-cCCCCCcCCeeECCC--CCEEEEEEeCCCCeE
Confidence 344456678899999999998876543 2 58889998776432 2 222334457899999 4655 45666776
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCc--EEEEeCCCCCCCCCCCCCCcccceE
Q 005506 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT--LRQHDFRQGSSCPPAGSSHQECRNI 196 (693)
Q Consensus 119 V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~--V~lwDlr~~~~~~~~~~~~~~~~~~ 196 (693)
|.+||+.... ...+..+...+...+|+|++..++++...+|. |.++|+.+++.
T Consensus 288 Iy~~dl~tg~-----------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~-------------- 342 (448)
T PRK04792 288 IYVVDIATKA-----------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV-------------- 342 (448)
T ss_pred EEEEECCCCC-----------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE--------------
Confidence 6666766431 23333445566778999965555555555554 44455544321
Q ss_pred EEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEE-eCCCc--EEEEecCCCCCCcccccCCCCCCcccccccCccc
Q 005506 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVG-GSDAF--ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 273 (693)
Q Consensus 197 l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latg-s~Dg~--IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (693)
..+... . ......+|+|++ ++|+.. ..++. |.++|+.++... .....
T Consensus 343 ---------~~Lt~~-g--~~~~~~~~SpDG-~~l~~~~~~~g~~~I~~~dl~~g~~~--------------~lt~~--- 392 (448)
T PRK04792 343 ---------SRLTFE-G--EQNLGGSITPDG-RSMIMVNRTNGKFNIARQDLETGAMQ--------------VLTST--- 392 (448)
T ss_pred ---------EEEecC-C--CCCcCeeECCCC-CEEEEEEecCCceEEEEEECCCCCeE--------------EccCC---
Confidence 111100 0 112346899984 555554 44454 455676654311 00000
Q ss_pred cCCCCccceEEEEEcCCCCEEEEEec-CC--cEEEEECCCCCcceEEeecCCCceeEEecc
Q 005506 274 EHGRSSLHLTHVTFSPNGEEVLLSYS-GE--HVYLMDVNHAGGRAMRYTVGDASKIMSFTP 331 (693)
Q Consensus 274 ~~~~~~~~V~~v~fspdg~~L~sgs~-Dg--~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p 331 (693)
. ......|+|||++|+..+. ++ .++++++.. ................+|+|
T Consensus 393 ---~---~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G-~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 393 ---R---LDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG-RFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred ---C---CCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEECcCCCCCcCCCccCC
Confidence 0 0123479999999887665 33 478888754 32222222223334445554
No 259
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.93 E-value=4.2e-09 Score=119.05 Aligned_cols=137 Identities=26% Similarity=0.418 Sum_probs=111.6
Q ss_pred cCcccccchhhhcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCC
Q 005506 26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105 (693)
Q Consensus 26 ~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~ 105 (693)
+.+.+=+|+...... +. .+.||.+.|.++.|+.+|.+++|.|+|.++++|++++.+......-+|++.|+.++|.|+
T Consensus 153 v~~~iivW~~~~dn~-p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n- 229 (967)
T KOG0974|consen 153 VFGEIIVWKPHEDNK-PI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN- 229 (967)
T ss_pred ccccEEEEeccccCC-cc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-
Confidence 345555666552222 22 689999999999999999999999999999999999988776333599999999999986
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCC-CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 005506 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHT-RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180 (693)
Q Consensus 106 ~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~-~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~ 180 (693)
.++|++.|.+.++|+.+- ..+..+..|. ..+..++..+ +..+.+|++.||.+++||+...
T Consensus 230 ---~i~t~gedctcrvW~~~~-----------~~l~~y~~h~g~~iw~~~~~~-~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 230 ---RIITVGEDCTCRVWGVNG-----------TQLEVYDEHSGKGIWKIAVPI-GVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred ---eeEEeccceEEEEEeccc-----------ceehhhhhhhhcceeEEEEcC-CceEEEeeccCcchhhhhhhcc
Confidence 899999999999997763 2344677776 4789999988 6678899999999999998653
No 260
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.90 E-value=9.7e-08 Score=105.52 Aligned_cols=205 Identities=13% Similarity=0.088 Sum_probs=122.6
Q ss_pred CcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCC---CcEEEEEcCCCCCCCCCCCCCCCceeeccCCC
Q 005506 72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQCHTR 148 (693)
Q Consensus 72 g~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~D---g~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~ 148 (693)
..|.+||.. +.....+ ..+...+.+.+|+|+ ++.|+..+.+ ..|.+||+..+. ...+.....
T Consensus 176 ~~L~~~D~d-G~~~~~l-~~~~~~v~~p~wSPD--G~~la~~s~~~~~~~I~~~dl~~g~-----------~~~l~~~~g 240 (427)
T PRK02889 176 YQLQISDAD-GQNAQSA-LSSPEPIISPAWSPD--GTKLAYVSFESKKPVVYVHDLATGR-----------RRVVANFKG 240 (427)
T ss_pred cEEEEECCC-CCCceEe-ccCCCCcccceEcCC--CCEEEEEEccCCCcEEEEEECCCCC-----------EEEeecCCC
Confidence 357777774 4444445 467788999999999 6777766543 359999998542 112222334
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCC
Q 005506 149 RVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRP 228 (693)
Q Consensus 149 ~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~ 228 (693)
.+...+|+|++..++++.+.+|...+|.+..... ....+.. +........|+|+ +
T Consensus 241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~---------------------~~~~lt~---~~~~~~~~~wSpD-G 295 (427)
T PRK02889 241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGS---------------------GLRRLTQ---SSGIDTEPFFSPD-G 295 (427)
T ss_pred CccceEECCCCCEEEEEEccCCCceEEEEECCCC---------------------CcEECCC---CCCCCcCeEEcCC-C
Confidence 5668899996655666778888877776542210 0011111 1123356789998 5
Q ss_pred cEEEEEe-CCCcEEEEecCC--CCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCC---c
Q 005506 229 HLLLVGG-SDAFARLYDRRM--LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE---H 302 (693)
Q Consensus 229 ~~Latgs-~Dg~IriwD~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg---~ 302 (693)
+.|+..+ .++...||.+.. ... . .+ .+ .+. ......|||+|++|+..+.++ .
T Consensus 296 ~~l~f~s~~~g~~~Iy~~~~~~g~~-~----------~l-t~-------~g~---~~~~~~~SpDG~~Ia~~s~~~g~~~ 353 (427)
T PRK02889 296 RSIYFTSDRGGAPQIYRMPASGGAA-Q----------RV-TF-------TGS---YNTSPRISPDGKLLAYISRVGGAFK 353 (427)
T ss_pred CEEEEEecCCCCcEEEEEECCCCce-E----------EE-ec-------CCC---CcCceEECCCCCEEEEEEccCCcEE
Confidence 6555444 456667776542 210 0 00 00 111 134578999999998776643 6
Q ss_pred EEEEECCCCCcceEEeecCCCceeEEeccCCCcccccC
Q 005506 303 VYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQP 340 (693)
Q Consensus 303 V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~ 340 (693)
|++||+.++....+ ..........|+|+...+.+..
T Consensus 354 I~v~d~~~g~~~~l--t~~~~~~~p~~spdg~~l~~~~ 389 (427)
T PRK02889 354 LYVQDLATGQVTAL--TDTTRDESPSFAPNGRYILYAT 389 (427)
T ss_pred EEEEECCCCCeEEc--cCCCCccCceECCCCCEEEEEE
Confidence 99999998653322 2223345677888877665544
No 261
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=7.5e-09 Score=108.89 Aligned_cols=176 Identities=16% Similarity=0.208 Sum_probs=124.5
Q ss_pred EEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC-------CcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCC
Q 005506 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS-------RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD 116 (693)
Q Consensus 44 ~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~-------~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~D 116 (693)
..+.||+..|..+.--.+.+-+++++.|++|++|.+.. ..+..++ +.|+.+|.++.|..+ .+.++++ |
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY-~aHkk~i~~igfL~~--lr~i~Sc--D 803 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTY-QAHKKPIHDIGFLAD--LRSIASC--D 803 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEh-hhccCcccceeeeec--cceeeec--c
Confidence 45789999999998777888899999999999999863 2355555 789999999999988 4677755 7
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCceee--ccCCCCeEEEEEecC-CCcEE-EEEeCCCcEEEEeCCCCCCCCCCCCCCcc
Q 005506 117 AEVRLFNLSRFSGRGLDDNAITPSALY--QCHTRRVKKLAVEVG-NPHVV-WSASEDGTLRQHDFRQGSSCPPAGSSHQE 192 (693)
Q Consensus 117 g~V~vwdl~~~~~~~~~~~~~~~~~~~--~~h~~~V~~la~sp~-~~~~l-~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~ 192 (693)
+-|++||.-.+. ++... ....+.+..+..-|. +..++ +-++...+|+++|.|...-.
T Consensus 804 ~giHlWDPFigr----------~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~--------- 864 (1034)
T KOG4190|consen 804 GGIHLWDPFIGR----------LLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWT--------- 864 (1034)
T ss_pred Ccceeecccccc----------hhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccce---------
Confidence 999999986431 12111 111222333333332 33444 44478899999999976521
Q ss_pred cceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccc
Q 005506 193 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ 255 (693)
Q Consensus 193 ~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~ 255 (693)
|. ..+...++....+.++++-|. |+++++|-..|.|.+.|.|+++.+.++.
T Consensus 865 ~E-----------~kVcna~~Pna~~R~iaVa~~-GN~lAa~LSnGci~~LDaR~G~vINswr 915 (1034)
T KOG4190|consen 865 CE-----------LKVCNAPGPNALTRAIAVADK-GNKLAAALSNGCIAILDARNGKVINSWR 915 (1034)
T ss_pred ee-----------EEeccCCCCchheeEEEeccC-cchhhHHhcCCcEEEEecCCCceeccCC
Confidence 11 122333444567889999996 7999999999999999999998766553
No 262
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.87 E-value=3.7e-07 Score=100.85 Aligned_cols=203 Identities=13% Similarity=0.145 Sum_probs=121.2
Q ss_pred cEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEe---CCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCC
Q 005506 73 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA---GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR 149 (693)
Q Consensus 73 ~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs---~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~ 149 (693)
.|.+||...... ..+ ..+...+.+.+|+|+ |+.|+..+ .+..|.+|++..+.. ..+..+ ...
T Consensus 180 ~l~~~d~dg~~~-~~l-t~~~~~~~~p~wSPD--G~~la~~s~~~g~~~i~i~dl~~G~~--------~~l~~~---~~~ 244 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVV-HRSPQPLMSPAWSPD--GSKLAYVTFESGRSALVIQTLANGAV--------RQVASF---PRH 244 (429)
T ss_pred eEEEEcCCCCCC-EEe-ecCCCceeeeEEcCC--CCEEEEEEecCCCcEEEEEECCCCCe--------EEccCC---CCC
Confidence 688999875543 334 356678999999999 67776543 245789999875421 112222 233
Q ss_pred eEEEEEecCCCcEEEEEeCCC--cEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCC
Q 005506 150 VKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR 227 (693)
Q Consensus 150 V~~la~sp~~~~~l~Sgs~Dg--~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~ 227 (693)
+..++|+|++..++++.+.+| .|.+||+.++... .+.. +...+....|+|+
T Consensus 245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~-----------------------~lt~---~~~~~~~~~wSPD- 297 (429)
T PRK03629 245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-----------------------QVTD---GRSNNTEPTWFPD- 297 (429)
T ss_pred cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-----------------------EccC---CCCCcCceEECCC-
Confidence 456899996655655656666 4888888765311 1111 1124567899998
Q ss_pred CcEEEEEeC-CCcEEEE--ecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecC---C
Q 005506 228 PHLLLVGGS-DAFARLY--DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---E 301 (693)
Q Consensus 228 ~~~Latgs~-Dg~Iriw--D~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~D---g 301 (693)
++.|+..+. ++...|| |+..+... .+ ...+ .......|+|||++|+..+.+ .
T Consensus 298 G~~I~f~s~~~g~~~Iy~~d~~~g~~~--------------~l-----t~~~---~~~~~~~~SpDG~~Ia~~~~~~g~~ 355 (429)
T PRK03629 298 SQNLAYTSDQAGRPQVYKVNINGGAPQ--------------RI-----TWEG---SQNQDADVSSDGKFMVMVSSNGGQQ 355 (429)
T ss_pred CCEEEEEeCCCCCceEEEEECCCCCeE--------------Ee-----ecCC---CCccCEEECCCCCEEEEEEccCCCc
Confidence 566665554 4555555 55433210 00 0001 124568899999999876653 4
Q ss_pred cEEEEECCCCCcceEEeecCCCceeEEeccCCCcccccCC
Q 005506 302 HVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPP 341 (693)
Q Consensus 302 ~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~ 341 (693)
.|++||+.++....+. .........|+|+...+.+...
T Consensus 356 ~I~~~dl~~g~~~~Lt--~~~~~~~p~~SpDG~~i~~~s~ 393 (429)
T PRK03629 356 HIAKQDLATGGVQVLT--DTFLDETPSIAPNGTMVIYSSS 393 (429)
T ss_pred eEEEEECCCCCeEEeC--CCCCCCCceECCCCCEEEEEEc
Confidence 6899999886533222 2223345678888777665543
No 263
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.85 E-value=3.9e-07 Score=91.06 Aligned_cols=260 Identities=15% Similarity=0.152 Sum_probs=149.6
Q ss_pred eccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeC-CCc--EE-
Q 005506 46 LEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-DAE--VR- 120 (693)
Q Consensus 46 l~gH~~~V~~l~~s~~g-~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~-Dg~--V~- 120 (693)
+..-..++.+++|+|+| .+|.+..-|-+|.||.+.+.+....- --..++..++|+|+ |++.+.++. |.. |.
T Consensus 87 Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~--~pK~~~kg~~f~~d--g~f~ai~sRrDCkdyv~i 162 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP--HPKTNVKGYAFHPD--GQFCAILSRRDCKDYVQI 162 (447)
T ss_pred eccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec--ccccCceeEEECCC--CceeeeeecccHHHHHHH
Confidence 44556789999999999 56677778999999999887665432 22345788999998 677666553 111 11
Q ss_pred ----------EEEcCCCCCCC----CCCCCC------CCceeeccC-CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 005506 121 ----------LFNLSRFSGRG----LDDNAI------TPSALYQCH-TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (693)
Q Consensus 121 ----------vwdl~~~~~~~----~~~~~~------~~~~~~~~h-~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~ 179 (693)
-+++.+..... .+.+.. -..+.+.-| .-.++.++|+| .+.+|+.|+.|+.+|+.+--+
T Consensus 163 ~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP-~~qflavGsyD~~lrvlnh~t 241 (447)
T KOG4497|consen 163 SSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSP-CNQFLAVGSYDQMLRVLNHFT 241 (447)
T ss_pred HhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEecc-ccceEEeeccchhhhhhceee
Confidence 11111100000 000000 001111112 35789999999 778999999999998866443
Q ss_pred CCCCCC------------------------------------CCCCCcccceEEEeccC-----CceeeecCCCCCccce
Q 005506 180 GSSCPP------------------------------------AGSSHQECRNILLDLRC-----GAKRSLADPPKQTLSL 218 (693)
Q Consensus 180 ~~~~~~------------------------------------~~~~~~~~~~~l~~~~~-----~~~~~l~~~~~~~~~v 218 (693)
-+.... ...+..+...+++.... ...++....+.....+
T Consensus 242 Wk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~ 321 (447)
T KOG4497|consen 242 WKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGA 321 (447)
T ss_pred eeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCccccc
Confidence 321100 00000000011111110 0111223334445677
Q ss_pred EEEEEcCCCCcEEEEEeC--CCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEE
Q 005506 219 KSCDISSTRPHLLLVGGS--DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL 296 (693)
Q Consensus 219 ~sl~~sp~~~~~Latgs~--Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~s 296 (693)
.-++|+++ ..+++|-.. -..+.+||++..+....+. ...+|....|+|....|+.
T Consensus 322 g~lafs~D-s~y~aTrnd~~PnalW~Wdlq~l~l~avLi----------------------Qk~piraf~WdP~~prL~v 378 (447)
T KOG4497|consen 322 GKLAFSCD-STYAATRNDKYPNALWLWDLQNLKLHAVLI----------------------QKHPIRAFEWDPGRPRLVV 378 (447)
T ss_pred ceeeecCC-ceEEeeecCCCCceEEEEechhhhhhhhhh----------------------hccceeEEEeCCCCceEEE
Confidence 88999997 566666533 2568999999875432211 1126999999999999999
Q ss_pred EecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCC
Q 005506 297 SYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN 334 (693)
Q Consensus 297 gs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~ 334 (693)
+.+...+|+|-..... .......+-.+..++|.....
T Consensus 379 ctg~srLY~W~psg~~-~V~vP~~GF~i~~l~W~~~g~ 415 (447)
T KOG4497|consen 379 CTGKSRLYFWAPSGPR-VVGVPKKGFNIQKLQWLQPGE 415 (447)
T ss_pred EcCCceEEEEcCCCce-EEecCCCCceeeeEEecCCCc
Confidence 9999999999877621 111222334455566655443
No 264
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.85 E-value=4.8e-08 Score=96.69 Aligned_cols=239 Identities=14% Similarity=0.225 Sum_probs=151.4
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCc-----EEEEeccCCC------------cceEEEEEeeCCCCCEEE
Q 005506 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-----LLHSIETGHS------------ANVFCTKFVPETSDELVV 111 (693)
Q Consensus 49 H~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~-----~~~~l~~~h~------------~~I~sv~f~p~~~~~~l~ 111 (693)
....|+++.|...|.+|++|..-|+|.+|.-.... ....+ ++|. ..|..+.|...++-..++
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teF-Qshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEF-QSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhh-cccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 34679999999999999999999999999865332 22223 3443 467889998776455677
Q ss_pred EEeCCCcEEEEEcCCCCCCCCCCC--------------------------------CCCCceee-ccCCCCeEEEEEecC
Q 005506 112 SGAGDAEVRLFNLSRFSGRGLDDN--------------------------------AITPSALY-QCHTRRVKKLAVEVG 158 (693)
Q Consensus 112 sgs~Dg~V~vwdl~~~~~~~~~~~--------------------------------~~~~~~~~-~~h~~~V~~la~sp~ 158 (693)
..+.|.+|++|.+.....+....+ ...|...+ ..|.-.|.+|.|+.
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns- 182 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS- 182 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC-
Confidence 778899999999875421111000 00112222 46777889999987
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCC
Q 005506 159 NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA 238 (693)
Q Consensus 159 ~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg 238 (693)
+...++ .+.|=.|.+|.+.-...+ -.+.++....... -+..|++..|+|.....+.-.++.|
T Consensus 183 D~et~l-SaDdLrINLWnl~i~D~s-----------FnIVDiKP~nmee------LteVItSaeFhp~~cn~fmYSsSkG 244 (460)
T COG5170 183 DKETLL-SADDLRINLWNLEIIDGS-----------FNIVDIKPHNMEE------LTEVITSAEFHPEMCNVFMYSSSKG 244 (460)
T ss_pred chheee-eccceeeeeccccccCCc-----------eEEEeccCccHHH------HHHHHhhcccCHhHcceEEEecCCC
Confidence 444554 456788999998764322 2344443322111 1235788999998888899999999
Q ss_pred cEEEEecCCCCCCc---ccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcce
Q 005506 239 FARLYDRRMLPPLT---SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRA 315 (693)
Q Consensus 239 ~IriwD~r~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~ 315 (693)
.|++-|+|....-. ++-.....+..+..| .+ --..|..+.|+++|+++++-.. -+|.|||++..+.+.
T Consensus 245 ~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff-------~e-ivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pi 315 (460)
T COG5170 245 EIKLNDLRQSALCDNSKKLFELTIDGVDVDFF-------EE-IVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPI 315 (460)
T ss_pred cEEehhhhhhhhccCchhhhhhccCcccchhH-------HH-HhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCc
Confidence 99999999532100 000000000000011 00 1124889999999999887654 489999999866444
Q ss_pred E
Q 005506 316 M 316 (693)
Q Consensus 316 ~ 316 (693)
.
T Consensus 316 k 316 (460)
T COG5170 316 K 316 (460)
T ss_pred e
Confidence 3
No 265
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.84 E-value=4.9e-08 Score=98.01 Aligned_cols=236 Identities=17% Similarity=0.231 Sum_probs=148.6
Q ss_pred CcEEEEEECCCCC--EEEEEeCCCcEEEEECCCCc-----------------------------------EEEEeccCCC
Q 005506 51 GCVNAISWNSKGS--LLISGSDDTHINVWSYSSRK-----------------------------------LLHSIETGHS 93 (693)
Q Consensus 51 ~~V~~l~~s~~g~--~LaSgs~Dg~I~IWd~~~~~-----------------------------------~~~~l~~~h~ 93 (693)
..|+.|.|.+++. .++....|.+|++|.+.... +.+.+..+|+
T Consensus 85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt 164 (433)
T KOG1354|consen 85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT 164 (433)
T ss_pred hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence 5789999998653 56666789999999874311 1222335788
Q ss_pred cceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeecc-----CCCCeEEEEEecCCCcEEEEEeC
Q 005506 94 ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC-----HTRRVKKLAVEVGNPHVVWSASE 168 (693)
Q Consensus 94 ~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~-----h~~~V~~la~sp~~~~~l~Sgs~ 168 (693)
.-|.++.++.+ ...++++ .|-.|.+|++....+.. .+.-++. -+.-|++..|+|..-++|+-.+.
T Consensus 165 yhiNSIS~NsD--~Et~lSA-DdLRINLWnlei~d~sF-------nIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSS 234 (433)
T KOG1354|consen 165 YHINSISVNSD--KETFLSA-DDLRINLWNLEIIDQSF-------NIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSS 234 (433)
T ss_pred eEeeeeeecCc--cceEeec-cceeeeeccccccCCce-------eEEEccccCHHHHHHHHhhhccCHhHccEEEEecC
Confidence 99999999887 4666665 68899999998543211 1112222 23568889999988899999999
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCC
Q 005506 169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML 248 (693)
Q Consensus 169 Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~ 248 (693)
.|+|++-|+|....|.... .++....... .......-...|..+.|++. |+++++-.. -+|++||+.+.
T Consensus 235 KGtIrLcDmR~~aLCd~hs--------KlfEepedp~-~rsffseiIsSISDvKFs~s-GryilsRDy-ltvk~wD~nme 303 (433)
T KOG1354|consen 235 KGTIRLCDMRQSALCDAHS--------KLFEEPEDPS-SRSFFSEIISSISDVKFSHS-GRYILSRDY-LTVKLWDLNME 303 (433)
T ss_pred CCcEEEeechhhhhhcchh--------hhhccccCCc-chhhHHHHhhhhhceEEccC-CcEEEEecc-ceeEEEecccc
Confidence 9999999999776551110 0110000000 00011111246788999997 788887643 68999999654
Q ss_pred -CCCcccccCC--CCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcce
Q 005506 249 -PPLTSCQKRM--SPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRA 315 (693)
Q Consensus 249 -~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~ 315 (693)
+|+.+++... .+..|-.+ + ...-..-..++|+-++.++++|+....+++|++..+....
T Consensus 304 ~~pv~t~~vh~~lr~kLc~lY-------E-nD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d 365 (433)
T KOG1354|consen 304 AKPVETYPVHEYLRSKLCSLY-------E-NDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKED 365 (433)
T ss_pred CCcceEEeehHhHHHHHHHHh-------h-ccchhheeEEEEcCCcceEecccccceEEEecCCCCccee
Confidence 3333322100 00000000 0 0000123568999999999999999999999987765433
No 266
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.82 E-value=1.1e-06 Score=96.74 Aligned_cols=231 Identities=13% Similarity=0.075 Sum_probs=127.8
Q ss_pred EeccCCCcEEEEEECCCCCEEE---EEeCCC--cEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEe-CCC-
Q 005506 45 ELEGHQGCVNAISWNSKGSLLI---SGSDDT--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA-GDA- 117 (693)
Q Consensus 45 ~l~gH~~~V~~l~~s~~g~~La---Sgs~Dg--~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs-~Dg- 117 (693)
.|..+...+.+=.|+|||+.++ +...++ .|.+.++.+++... + ....+.....+|+|+ |+.|+..+ .+|
T Consensus 179 ~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-l-t~~~g~~~~p~wSPD--G~~Laf~s~~~g~ 254 (428)
T PRK01029 179 PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-I-LALQGNQLMPTFSPR--KKLLAFISDRYGN 254 (428)
T ss_pred EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-e-ecCCCCccceEECCC--CCEEEEEECCCCC
Confidence 3444556677789999997522 343333 47777888775433 2 234555677899999 56666544 223
Q ss_pred ---cEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccc
Q 005506 118 ---EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (693)
Q Consensus 118 ---~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~ 194 (693)
.+.+|++...... .+......+.......+|+|++..++++...+|...+|.+.....
T Consensus 255 ~di~~~~~~~~~g~~g-------~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~------------ 315 (428)
T PRK01029 255 PDLFIQSFSLETGAIG-------KPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPE------------ 315 (428)
T ss_pred cceeEEEeecccCCCC-------cceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccc------------
Confidence 3344666532100 122222222234467899995554555555677666664422100
Q ss_pred eEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCC---CcEEEEecCCCCCCcccccCCCCCCcccccccCc
Q 005506 195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 271 (693)
Q Consensus 195 ~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~D---g~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (693)
.+....+.. ....+....|+|+ ++.|+..+.+ ..|.+||+.+++... +.
T Consensus 316 -------g~~~~~lt~---~~~~~~~p~wSPD-G~~Laf~~~~~g~~~I~v~dl~~g~~~~--------------Lt--- 367 (428)
T PRK01029 316 -------GQSPRLLTK---KYRNSSCPAWSPD-GKKIAFCSVIKGVRQICVYDLATGRDYQ--------------LT--- 367 (428)
T ss_pred -------ccceEEecc---CCCCccceeECCC-CCEEEEEEcCCCCcEEEEEECCCCCeEE--------------cc---
Confidence 000001111 1124457789998 5666655432 468999987654210 00
Q ss_pred cccCCCCccceEEEEEcCCCCEEEEEec---CCcEEEEECCCCCcceEEeecCCCceeEEeccC
Q 005506 272 LSEHGRSSLHLTHVTFSPNGEEVLLSYS---GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT 332 (693)
Q Consensus 272 ~~~~~~~~~~V~~v~fspdg~~L~sgs~---Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~ 332 (693)
.+ ...+....|+|||+.|+.... ...|++||+.+++...+. .........+|+|.
T Consensus 368 ---~~--~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt-~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 368 ---TS--PENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV-IGSGEKRFPSWGAF 425 (428)
T ss_pred ---CC--CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCcccCceecCC
Confidence 00 012567899999998875543 457999999886533332 22333445666664
No 267
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.81 E-value=1.8e-08 Score=109.61 Aligned_cols=241 Identities=15% Similarity=0.161 Sum_probs=162.6
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEECCC-CcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCC
Q 005506 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSS-RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 128 (693)
Q Consensus 50 ~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~-~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~ 128 (693)
.++++++..+|.|+-+|.++.-| +.|-|+.. +.+.+-+.....-.|-.+.|+|...-.+-++......-.+|++...+
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 46789999999999999998876 45556653 33333231122345778899987544455555556677889998654
Q ss_pred CCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeee
Q 005506 129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 208 (693)
Q Consensus 129 ~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 208 (693)
.+ .....+.+|+..|+.+-|+|+.+.++++++.|-.|..||+|+.+.. ...++
T Consensus 103 ~~-------aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p-----------~ys~~--------- 155 (1081)
T KOG0309|consen 103 SN-------AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRP-----------FYSTS--------- 155 (1081)
T ss_pred cc-------ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcc-----------eeeee---------
Confidence 33 2355677899999999999999999999999999999999997643 11111
Q ss_pred cCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEc
Q 005506 209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS 288 (693)
Q Consensus 209 ~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fs 288 (693)
........++|+-.+++.+| .+....|++||+|.+... +... ++|.. .|+.+.|.
T Consensus 156 ----~w~s~asqVkwnyk~p~vla-sshg~~i~vwd~r~gs~p------------l~s~-------K~~vs-~vn~~~fn 210 (1081)
T KOG0309|consen 156 ----SWRSAASQVKWNYKDPNVLA-SSHGNDIFVWDLRKGSTP------------LCSL-------KGHVS-SVNSIDFN 210 (1081)
T ss_pred ----cccccCceeeecccCcchhh-hccCCceEEEeccCCCcc------------eEEe-------cccce-eeehHHHh
Confidence 11234567889887665554 457788999999976421 1111 22332 47788887
Q ss_pred C-CCCEEEEEecCCcEEEEECCCCCcc-eEEeecCCCceeEEeccCCCcccccCCcc
Q 005506 289 P-NGEEVLLSYSGEHVYLMDVNHAGGR-AMRYTVGDASKIMSFTPTLNGLELQPPIH 343 (693)
Q Consensus 289 p-dg~~L~sgs~Dg~V~lwdl~~~~~~-~~~~~~~~~~~~~~~~p~~~g~~~~~~~~ 343 (693)
. ....+++++.|++|..||....... ........++...++-|...|.-..+..+
T Consensus 211 r~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G 267 (1081)
T KOG0309|consen 211 RFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVG 267 (1081)
T ss_pred hhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccC
Confidence 5 4457889999999999999875433 33334455566666777766655444433
No 268
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.81 E-value=1.4e-08 Score=102.16 Aligned_cols=112 Identities=14% Similarity=0.153 Sum_probs=102.6
Q ss_pred ccCcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhcc
Q 005506 357 ATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRI 436 (693)
Q Consensus 357 ~~~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l 436 (693)
...+..+++..+.|++.+..|+ |..|+-.|-.||+..|+. ...+..||..||.++. -..||.|..++|++
T Consensus 32 ~~~~advekhlElGk~lla~~Q-~sDALt~yHaAve~dp~~------Y~aifrRaT~yLAmGk---sk~al~Dl~rVlel 101 (504)
T KOG0624|consen 32 TASPADVEKHLELGKELLARGQ-LSDALTHYHAAVEGDPNN------YQAIFRRATVYLAMGK---SKAALQDLSRVLEL 101 (504)
T ss_pred cCCHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHcCCchh------HHHHHHHHHHHhhhcC---CccchhhHHHHHhc
Confidence 4456778889999999999999 999999999999999887 7788899999999776 78899999999999
Q ss_pred CCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhH
Q 005506 437 DSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA 478 (693)
Q Consensus 437 ~p~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~ 478 (693)
.|++.-|-..|+..|++.|++++|..+|+.++..+|++....
T Consensus 102 KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~ 143 (504)
T KOG0624|consen 102 KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVL 143 (504)
T ss_pred CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhH
Confidence 999999999999999999999999999999999999775443
No 269
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.81 E-value=6.5e-07 Score=98.72 Aligned_cols=201 Identities=13% Similarity=0.098 Sum_probs=120.9
Q ss_pred CcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCC---CcEEEEEcCCCCCCCCCCCCCCCceeeccCCC
Q 005506 72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQCHTR 148 (693)
Q Consensus 72 g~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~D---g~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~ 148 (693)
..|.++|..... ...+ ..+...+.+.+|+|+ ++.|+.+..+ ..|++||+.... ...+..+..
T Consensus 170 ~~l~~~d~~g~~-~~~l-~~~~~~~~~p~~Spd--g~~la~~~~~~~~~~i~v~d~~~g~-----------~~~~~~~~~ 234 (417)
T TIGR02800 170 YELQVADYDGAN-PQTI-TRSREPILSPAWSPD--GQKLAYVSFESGKPEIYVQDLATGQ-----------REKVASFPG 234 (417)
T ss_pred ceEEEEcCCCCC-CEEe-ecCCCceecccCCCC--CCEEEEEEcCCCCcEEEEEECCCCC-----------EEEeecCCC
Confidence 358888875443 3444 356667999999999 6777776643 479999997532 222333455
Q ss_pred CeEEEEEecCCCcEEEEEeCCC--cEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCC
Q 005506 149 RVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST 226 (693)
Q Consensus 149 ~V~~la~sp~~~~~l~Sgs~Dg--~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~ 226 (693)
.+..++|+|++..++++.+.++ .|.+||+.++... .+.. +........|+|+
T Consensus 235 ~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-----------------------~l~~---~~~~~~~~~~s~d 288 (417)
T TIGR02800 235 MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-----------------------RLTN---GPGIDTEPSWSPD 288 (417)
T ss_pred CccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-----------------------ECCC---CCCCCCCEEECCC
Confidence 6677899996555666666655 4778887664311 1110 1112235679997
Q ss_pred CCcEEEEEeC-CC--cEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCC--
Q 005506 227 RPHLLLVGGS-DA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE-- 301 (693)
Q Consensus 227 ~~~~Latgs~-Dg--~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg-- 301 (693)
+..|+..+. ++ .|++||+...+.. .+ .. + ...+..+.|+|+|++|+.++.++
T Consensus 289 -g~~l~~~s~~~g~~~iy~~d~~~~~~~--------------~l-----~~--~-~~~~~~~~~spdg~~i~~~~~~~~~ 345 (417)
T TIGR02800 289 -GKSIAFTSDRGGSPQIYMMDADGGEVR--------------RL-----TF--R-GGYNASPSWSPDGDLIAFVHREGGG 345 (417)
T ss_pred -CCEEEEEECCCCCceEEEEECCCCCEE--------------Ee-----ec--C-CCCccCeEECCCCCEEEEEEccCCc
Confidence 566655443 33 5777776643211 00 00 0 11356789999999999888765
Q ss_pred -cEEEEECCCCCcceEEeecCCCceeEEeccCCCcccc
Q 005506 302 -HVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLEL 338 (693)
Q Consensus 302 -~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~ 338 (693)
.|++||+.++.. ..+. .........|+|+...+.+
T Consensus 346 ~~i~~~d~~~~~~-~~l~-~~~~~~~p~~spdg~~l~~ 381 (417)
T TIGR02800 346 FNIAVMDLDGGGE-RVLT-DTGLDESPSFAPNGRMILY 381 (417)
T ss_pred eEEEEEeCCCCCe-EEcc-CCCCCCCceECCCCCEEEE
Confidence 899999988432 2222 1222334467776655543
No 270
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.81 E-value=5.1e-08 Score=95.67 Aligned_cols=127 Identities=11% Similarity=0.044 Sum_probs=106.5
Q ss_pred cccCcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHH-HhccccCcHHHHHHhHhHhh
Q 005506 356 VATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALL-LKRKWKNDAQMAIRDCYNAR 434 (693)
Q Consensus 356 ~~~~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~-lk~~~~~d~~~Al~Dc~~Al 434 (693)
....++..+.+...|.-+...|+ |..|+..|.+|+.+.|++ +.++.+.|.++ ...+. .++.+|+.-..+||
T Consensus 66 L~~~P~~~~~w~~Lg~~~~~~g~-~~~A~~a~~~Al~l~P~~------~~~~~~lA~aL~~~~g~-~~~~~A~~~l~~al 137 (198)
T PRK10370 66 IRANPQNSEQWALLGEYYLWRND-YDNALLAYRQALQLRGEN------AELYAALATVLYYQAGQ-HMTPQTREMIDKAL 137 (198)
T ss_pred HHHCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHH
Confidence 34466777888888999999999 999999999999999987 78999999986 44332 23589999999999
Q ss_pred ccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHHHHHHHHHHHHh
Q 005506 435 RIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETE 494 (693)
Q Consensus 435 ~l~p~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l~~~i~~~~~~ 494 (693)
+++|+++.|++.+|.+++.+|++++|+..+++++++.|.+.+-.+. + +.|+.|+.-
T Consensus 138 ~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~---i-~~i~~a~~~ 193 (198)
T PRK10370 138 ALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQL---V-ESINMAKLL 193 (198)
T ss_pred HhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHH---H-HHHHHHHHH
Confidence 9999999999999999999999999999999999999987664433 3 446666543
No 271
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.77 E-value=6.4e-08 Score=93.88 Aligned_cols=172 Identities=15% Similarity=0.136 Sum_probs=110.8
Q ss_pred ccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC-cEEEEeccCCCcceEEEEEeeCCCCCEEEEEeC--
Q 005506 39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAG-- 115 (693)
Q Consensus 39 ~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~-~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~-- 115 (693)
+..+.+.+..|+++=.+-..+-.++.++++..||.+.+.+.+.- .....+...|.+ -.+.++... ++.+.++..
T Consensus 78 ~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~--~~~i~s~~~g~ 154 (319)
T KOG4714|consen 78 GIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRH--GNSILSGGCGN 154 (319)
T ss_pred CcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhccccccc-ccccceeec--ccEEecCCcce
Confidence 33445555555554444444445678999999999999997642 122223222322 345555555 345544432
Q ss_pred ---CCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcc
Q 005506 116 ---DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE 192 (693)
Q Consensus 116 ---Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~ 192 (693)
-+..+.|+++... .......-...|.+++-+|...+++++|+.||.+.+||.|....+
T Consensus 155 ~n~~d~~~a~~~~p~~----------t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p--------- 215 (319)
T KOG4714|consen 155 WNAQDNFYANTLDPIK----------TLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP--------- 215 (319)
T ss_pred Eeeccceeeecccccc----------cccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccch---------
Confidence 1234455554211 111111123449999999988899999999999999999986321
Q ss_pred cceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCC
Q 005506 193 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (693)
Q Consensus 193 ~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~ 247 (693)
......|..++..+-|+|.+|..|.+++.||.+..||..+
T Consensus 216 ---------------~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 216 ---------------VSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ---------------HHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 2222356778999999999999999999999999999874
No 272
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.75 E-value=2.7e-08 Score=99.88 Aligned_cols=93 Identities=22% Similarity=0.375 Sum_probs=82.0
Q ss_pred cchhhhcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEE
Q 005506 32 MHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV 111 (693)
Q Consensus 32 ~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~ 111 (693)
+-+.+...+.++.++.+|.++|.+++|.+...+|.+|..|..|.+||+...+-+.....+|...|..+.+.+. -..++
T Consensus 179 ~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~--t~~l~ 256 (404)
T KOG1409|consen 179 MLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQH--TRQLI 256 (404)
T ss_pred EEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhh--heeee
Confidence 3345667788999999999999999999999999999999999999998776555444799999999999988 48999
Q ss_pred EEeCCCcEEEEEcCC
Q 005506 112 SGAGDAEVRLFNLSR 126 (693)
Q Consensus 112 sgs~Dg~V~vwdl~~ 126 (693)
+++.||.|-+|+++.
T Consensus 257 S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 257 SCGEDGGIVVWNMNV 271 (404)
T ss_pred eccCCCeEEEEeccc
Confidence 999999999999985
No 273
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=1.2e-08 Score=103.69 Aligned_cols=132 Identities=20% Similarity=0.125 Sum_probs=112.1
Q ss_pred ccCcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccC-------------CCCCcchhhhhhhHHHHHHhccccCcH
Q 005506 357 ATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLS-------------GIGPMLRHECLCIRAALLLKRKWKNDA 423 (693)
Q Consensus 357 ~~~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~-------------~~~~~~~~~~~~NRA~~~lk~~~~~d~ 423 (693)
.......+..++.||..|+.++ |..|...|.+++.+... ...+.++..++.|-|++-+|.+. +
T Consensus 216 ~~~~~~~~~~k~~~~~~~kk~~-~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~---~ 291 (372)
T KOG0546|consen 216 DKALEREEKKKNIGNKEFKKQR-YREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKG---R 291 (372)
T ss_pred chhhhhhhhhhccchhhhhhcc-HhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccC---C
Confidence 3455566788899999999999 99999999999987541 01233445688999999999655 7
Q ss_pred HHHHHhHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHHHHHHHHHHH
Q 005506 424 QMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAE 492 (693)
Q Consensus 424 ~~Al~Dc~~Al~l~p~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l~~~i~~~~ 492 (693)
..|+..|..+++.+++..||||||++++..+.++++|+++++.++...|+++.+.+.+...++.+.+..
T Consensus 292 ~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~ 360 (372)
T KOG0546|consen 292 GGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYN 360 (372)
T ss_pred CcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHH
Confidence 889999999999999999999999999999999999999999999999999998888887777766644
No 274
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.72 E-value=1.5e-08 Score=81.31 Aligned_cols=66 Identities=24% Similarity=0.233 Sum_probs=62.4
Q ss_pred hhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhc-cHHHHHHHHHHHcccCC
Q 005506 404 HECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLC-KYKEALDFAIAAQCLDP 472 (693)
Q Consensus 404 ~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~KA~~r~a~al~~l~-~~~eA~~~~~~~~~~~p 472 (693)
+..|.++|.++++. +++..|+..+.+||+++|+++.+++++|.|+..+| ++++|+++++++++++|
T Consensus 3 a~~~~~~g~~~~~~---~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQ---GDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHT---THHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 56789999999995 55999999999999999999999999999999999 89999999999999988
No 275
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.72 E-value=5.5e-07 Score=96.71 Aligned_cols=191 Identities=16% Similarity=0.179 Sum_probs=138.8
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEecc--CCCcceEEEEEeeC------------------CCCCEEEEEeCCCcE
Q 005506 60 SKGSLLISGSDDTHINVWSYSSRKLLHSIET--GHSANVFCTKFVPE------------------TSDELVVSGAGDAEV 119 (693)
Q Consensus 60 ~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~--~h~~~I~sv~f~p~------------------~~~~~l~sgs~Dg~V 119 (693)
|.+.++|....||.++||+...++....+.. .-.+..++++|.-. .+-..++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567999999999999999999887776632 12345555555411 012478888889999
Q ss_pred EEEEcCCCCCCCCCCCCCCCceee--ccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEE
Q 005506 120 RLFNLSRFSGRGLDDNAITPSALY--QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 197 (693)
Q Consensus 120 ~vwdl~~~~~~~~~~~~~~~~~~~--~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l 197 (693)
.+|++..+ +....+ .+|...|.++.++. .-.+|.|++.|+.+.+|+....... .+
T Consensus 83 ~~ys~~~g----------~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~------------~~ 139 (541)
T KOG4547|consen 83 LLYSVAGG----------EITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVII------------RI 139 (541)
T ss_pred EEEEecCC----------eEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceee------------ee
Confidence 99999854 222223 47999999999987 6678889999999999998775411 11
Q ss_pred EeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCC
Q 005506 198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 277 (693)
Q Consensus 198 ~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (693)
| ......+.+++++|+ +..|++++ +.|++||+.+.+.+. +| .||
T Consensus 140 ~-------------~~~~~~~~sl~is~D-~~~l~~as--~~ik~~~~~~kevv~-------------~f-------tgh 183 (541)
T KOG4547|consen 140 W-------------KEQKPLVSSLCISPD-GKILLTAS--RQIKVLDIETKEVVI-------------TF-------TGH 183 (541)
T ss_pred e-------------ccCCCccceEEEcCC-CCEEEecc--ceEEEEEccCceEEE-------------Ee-------cCC
Confidence 1 123456789999998 78898886 479999999876443 33 445
Q ss_pred CccceEEEEEcCC-----CCEEEEEec-CCcEEEEECCC
Q 005506 278 SSLHLTHVTFSPN-----GEEVLLSYS-GEHVYLMDVNH 310 (693)
Q Consensus 278 ~~~~V~~v~fspd-----g~~L~sgs~-Dg~V~lwdl~~ 310 (693)
.+ +|.++.|.-+ |.+++++.. +..|.+|-+..
T Consensus 184 ~s-~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 184 GS-PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Cc-ceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 55 6999999877 888887765 66777887665
No 276
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.70 E-value=4e-08 Score=98.98 Aligned_cols=127 Identities=22% Similarity=0.175 Sum_probs=101.8
Q ss_pred cchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCC
Q 005506 360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSS 439 (693)
Q Consensus 360 ~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~ 439 (693)
+.++.+..+.+....+.+. |..+++.|.+.++..|.. ..++...+.-...||-+ ++.+.+||+.|.++|+++|+
T Consensus 266 lkKv~K~les~e~~ie~~~-~t~cle~ge~vlk~ep~~--~~ir~~~~r~~c~C~~~---d~~~~eAiqqC~evL~~d~~ 339 (504)
T KOG0624|consen 266 LKKVVKSLESAEQAIEEKH-WTECLEAGEKVLKNEPEE--TMIRYNGFRVLCTCYRE---DEQFGEAIQQCKEVLDIDPD 339 (504)
T ss_pred HHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHhcCCcc--cceeeeeeheeeecccc---cCCHHHHHHHHHHHHhcCch
Confidence 3455666667777888888 999999999999988763 22222233333445545 46699999999999999999
Q ss_pred CcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHHHHHHHHHHH
Q 005506 440 SFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAE 492 (693)
Q Consensus 440 ~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l~~~i~~~~ 492 (693)
++.++..||.||+.-+.|++|+.+|+++++++|+|..+++.+++.++..+++.
T Consensus 340 dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~ 392 (504)
T KOG0624|consen 340 DVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSG 392 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999888887776655543
No 277
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=2.2e-08 Score=103.36 Aligned_cols=97 Identities=12% Similarity=0.018 Sum_probs=90.6
Q ss_pred CcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCC
Q 005506 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS 438 (693)
Q Consensus 359 ~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p 438 (693)
....+++.+++||..++..+ |..|+..|+.||+.+|++ +..|.|||++|+..+. |..|+-|+.+.++++|
T Consensus 45 ~~~~Ae~~k~~gn~~yk~k~-Y~nal~~yt~Ai~~~pd~------a~yy~nRAa~~m~~~~---~~~a~~dar~~~r~kd 114 (486)
T KOG0550|consen 45 AAQQAEEAKEEGNAFYKQKT-YGNALKNYTFAIDMCPDN------ASYYSNRAATLMMLGR---FEEALGDARQSVRLKD 114 (486)
T ss_pred HHHHHHHHHhhcchHHHHhh-HHHHHHHHHHHHHhCccc------hhhhchhHHHHHHHHh---HhhcccchhhheecCC
Confidence 34568899999999999999 999999999999999988 8899999999999766 9999999999999999
Q ss_pred CCcchhhhHHHHHHHhccHHHHHHHHH
Q 005506 439 SSFRAHLYMSEALEQLCKYKEALDFAI 465 (693)
Q Consensus 439 ~~~KA~~r~a~al~~l~~~~eA~~~~~ 465 (693)
...|++.|.++|+.+++...+|-+.|+
T Consensus 115 ~~~k~~~r~~~c~~a~~~~i~A~~~~~ 141 (486)
T KOG0550|consen 115 GFSKGQLREGQCHLALSDLIEAEEKLK 141 (486)
T ss_pred CccccccchhhhhhhhHHHHHHHHHhh
Confidence 999999999999999999999987776
No 278
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.68 E-value=9e-08 Score=100.35 Aligned_cols=103 Identities=16% Similarity=0.009 Sum_probs=96.1
Q ss_pred hhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcc
Q 005506 363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR 442 (693)
Q Consensus 363 a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~K 442 (693)
+..+...|.-....|+ +..|+..|.++|+..|+. +..|.+++.+|.+. |++..|+..+.+||+++|++..
T Consensus 64 a~~~~~~g~~~~~~g~-~~~A~~~~~~Al~l~P~~------~~a~~~lg~~~~~~---g~~~~A~~~~~~Al~l~P~~~~ 133 (296)
T PRK11189 64 AQLHYERGVLYDSLGL-RALARNDFSQALALRPDM------ADAYNYLGIYLTQA---GNFDAAYEAFDSVLELDPTYNY 133 (296)
T ss_pred HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHC---CCHHHHHHHHHHHHHhCCCCHH
Confidence 5567788888889999 999999999999999887 78999999999995 5599999999999999999999
Q ss_pred hhhhHHHHHHHhccHHHHHHHHHHHcccCCCCc
Q 005506 443 AHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS 475 (693)
Q Consensus 443 A~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~ 475 (693)
|++.+|.++..+|++++|+++++++++++|++.
T Consensus 134 a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 134 AYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999999999999986
No 279
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.67 E-value=1.6e-06 Score=93.39 Aligned_cols=254 Identities=12% Similarity=0.111 Sum_probs=143.4
Q ss_pred hcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEe-C
Q 005506 37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA-G 115 (693)
Q Consensus 37 i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs-~ 115 (693)
..+.+.+.++......-..+.|+|||+++.+++.||.|.++|+.+++.+.++..+ ....+++++|+ |++++++. .
T Consensus 23 ~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G--~~~~~i~~s~D--G~~~~v~n~~ 98 (369)
T PF02239_consen 23 GATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG--GNPRGIAVSPD--GKYVYVANYE 98 (369)
T ss_dssp TTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S--SEEEEEEE--T--TTEEEEEEEE
T ss_pred CCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC--CCcceEEEcCC--CCEEEEEecC
Confidence 3446677888765554456889999999999999999999999999999998543 34688999999 67777664 6
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCCceeecc-------CCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCC
Q 005506 116 DAEVRLFNLSRFSGRGLDDNAITPSALYQC-------HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS 188 (693)
Q Consensus 116 Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~-------h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~ 188 (693)
.+.|.++|..+. ++++.+.. ...++..|..+|..+.++++.-+-+.|.+.|.......
T Consensus 99 ~~~v~v~D~~tl----------e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~----- 163 (369)
T PF02239_consen 99 PGTVSVIDAETL----------EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL----- 163 (369)
T ss_dssp TTEEEEEETTT------------EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE-----
T ss_pred CCceeEeccccc----------cceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc-----
Confidence 899999999864 44544432 34578888888866556656666688888887654311
Q ss_pred CCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEE-EeCCCcEEEEecCCCCCCcccccCCCCCCccccc
Q 005506 189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV-GGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYF 267 (693)
Q Consensus 189 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Lat-gs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~ 267 (693)
....+ . .........|+|+ ++++++ ......|-++|..+.+.+..+.....|.
T Consensus 164 -----~~~~i--~------------~g~~~~D~~~dpd-gry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~------ 217 (369)
T PF02239_consen 164 -----KVTTI--K------------VGRFPHDGGFDPD-GRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPH------ 217 (369)
T ss_dssp -----EEEEE--E--------------TTEEEEEE-TT-SSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBE------
T ss_pred -----ceeee--c------------ccccccccccCcc-cceeeecccccceeEEEeeccceEEEEeecccccc------
Confidence 00011 0 1124567889998 455555 4567789999988765443322111110
Q ss_pred ccCccccCCCCcc-ceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCccccc
Q 005506 268 CPMHLSEHGRSSL-HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQ 339 (693)
Q Consensus 268 ~~~~~~~~~~~~~-~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~ 339 (693)
+.....--|... +++. ....+...++.-+...+.+||..+.+....+...+.+ -.+..+|+..-+-..
T Consensus 218 -~~~~~~~php~~g~vw~--~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd 286 (369)
T PF02239_consen 218 -PGPGANFPHPGFGPVWA--TSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVD 286 (369)
T ss_dssp -ETTEEEEEETTTEEEEE--EEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE
T ss_pred -ccccccccCCCcceEEe--eccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEee
Confidence 000000001111 1222 2234455555555667778999987655555544444 566778877665443
No 280
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.67 E-value=3.6e-06 Score=82.23 Aligned_cols=211 Identities=13% Similarity=0.065 Sum_probs=138.0
Q ss_pred EEECC-----CCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCC
Q 005506 56 ISWNS-----KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 130 (693)
Q Consensus 56 l~~s~-----~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~ 130 (693)
+.|-| ...+||.|+.-|...+|.+.+.+....+...|...|+-+.=.-+. ..-+..++.|.++++.++.....
T Consensus 73 ~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~-~~~~~i~sndht~k~~~~~~~s~- 150 (344)
T KOG4532|consen 73 MTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDL-KFPLNIASNDHTGKTMVVSGDSN- 150 (344)
T ss_pred ccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhccc-ccceeeccCCcceeEEEEecCcc-
Confidence 55555 345899999999999999987765444434454444333222221 23456678899999999986432
Q ss_pred CCCCCCCCCceeeccCCC--CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeee
Q 005506 131 GLDDNAITPSALYQCHTR--RVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 208 (693)
Q Consensus 131 ~~~~~~~~~~~~~~~h~~--~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 208 (693)
.+..|.. .+.+++++| ++.++++.+....|-.|.+...... ... ++.
T Consensus 151 -----------~~~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey---------~~~-~~~--------- 199 (344)
T KOG4532|consen 151 -----------KFAVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEY---------IEN-IYE--------- 199 (344)
T ss_pred -----------cceeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccce---------eee-eEe---------
Confidence 1112333 378899999 7899999999999999998764311 001 111
Q ss_pred cCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEc
Q 005506 209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS 288 (693)
Q Consensus 209 ~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fs 288 (693)
.. ....-.+.+|+.. ...+|++..||++.|||+|.......... ..+.|+++.+..+.|+
T Consensus 200 a~---t~D~gF~~S~s~~-~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s----------------strp~hnGa~R~c~Fs 259 (344)
T KOG4532|consen 200 AP---TSDHGFYNSFSEN-DLQFAVVFQDGTCAIYDVRNMATPMAEIS----------------STRPHHNGAFRVCRFS 259 (344)
T ss_pred cc---cCCCceeeeeccC-cceEEEEecCCcEEEEEecccccchhhhc----------------ccCCCCCCceEEEEec
Confidence 11 1123357788886 57999999999999999997542211110 1122445579999999
Q ss_pred CCCC--EEEEEecCCcEEEEECCCCCcceEEee
Q 005506 289 PNGE--EVLLSYSGEHVYLMDVNHAGGRAMRYT 319 (693)
Q Consensus 289 pdg~--~L~sgs~Dg~V~lwdl~~~~~~~~~~~ 319 (693)
+-|. .|+..-.-+.+.+-|+++.....++..
T Consensus 260 l~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i 292 (344)
T KOG4532|consen 260 LYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVI 292 (344)
T ss_pred CCCcceEEEEecCcceEEEEEcccCceeeEEec
Confidence 8774 555665678999999999776555543
No 281
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.66 E-value=3.9e-06 Score=90.40 Aligned_cols=200 Identities=16% Similarity=0.153 Sum_probs=124.2
Q ss_pred CEE-EEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCce
Q 005506 63 SLL-ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA 141 (693)
Q Consensus 63 ~~L-aSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~ 141 (693)
+++ ++-..++.|.|.|..+.+.+..+..++ ..-..+.|+|+ ++++++++.||.|.++|+.+. +.+.
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~-~~h~~~~~s~D--gr~~yv~~rdg~vsviD~~~~----------~~v~ 72 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGG-APHAGLKFSPD--GRYLYVANRDGTVSVIDLATG----------KVVA 72 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-ST-TEEEEEE-TT---SSEEEEEETTSEEEEEETTSS----------SEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCC-CceeEEEecCC--CCEEEEEcCCCeEEEEECCcc----------cEEE
Confidence 344 456678999999999999999995433 33456789998 688999999999999999965 4455
Q ss_pred eeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEE
Q 005506 142 LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC 221 (693)
Q Consensus 142 ~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl 221 (693)
.+.. ......+++++++..++++....+.|.++|.++.+.. ..+..+... .......+..+
T Consensus 73 ~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v--------------~~I~~~~~~----~~~~~~Rv~aI 133 (369)
T PF02239_consen 73 TIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPV--------------KTIPTGGMP----VDGPESRVAAI 133 (369)
T ss_dssp EEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EE--------------EEEE--EE-----TTTS---EEEE
T ss_pred EEec-CCCcceEEEcCCCCEEEEEecCCCceeEeccccccce--------------eeccccccc----ccccCCCceeE
Confidence 6553 4457889999955555555667999999999886532 111111100 00023456677
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEe-cC
Q 005506 222 DISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SG 300 (693)
Q Consensus 222 ~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs-~D 300 (693)
..+|.++.++++--.-+.|.+.|....+++.. ..+ ..........|+|+++|++++. ..
T Consensus 134 v~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~-----------~~i---------~~g~~~~D~~~dpdgry~~va~~~s 193 (369)
T PF02239_consen 134 VASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV-----------TTI---------KVGRFPHDGGFDPDGRYFLVAANGS 193 (369)
T ss_dssp EE-SSSSEEEEEETTTTEEEEEETTTSSCEEE-----------EEE---------E--TTEEEEEE-TTSSEEEEEEGGG
T ss_pred EecCCCCEEEEEEccCCeEEEEEeccccccce-----------eee---------cccccccccccCcccceeeeccccc
Confidence 77887554555555558888888776533210 111 0111356789999999987765 47
Q ss_pred CcEEEEECCCCCcc
Q 005506 301 EHVYLMDVNHAGGR 314 (693)
Q Consensus 301 g~V~lwdl~~~~~~ 314 (693)
+.|-++|..+++..
T Consensus 194 n~i~viD~~~~k~v 207 (369)
T PF02239_consen 194 NKIAVIDTKTGKLV 207 (369)
T ss_dssp TEEEEEETTTTEEE
T ss_pred ceeEEEeeccceEE
Confidence 89999999986543
No 282
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.62 E-value=2.8e-05 Score=83.46 Aligned_cols=230 Identities=14% Similarity=0.175 Sum_probs=136.5
Q ss_pred ccceeEEeccCCCcEEEEEECCCCCEEEEEe-CCCcEEEEECCC-CcEEEE---ec---------cCCCcceEEEEEeeC
Q 005506 39 RLSQERELEGHQGCVNAISWNSKGSLLISGS-DDTHINVWSYSS-RKLLHS---IE---------TGHSANVFCTKFVPE 104 (693)
Q Consensus 39 ~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs-~Dg~I~IWd~~~-~~~~~~---l~---------~~h~~~I~sv~f~p~ 104 (693)
.+..+.+..........++++|++++|+++. .+|.|.++++.. +..... +. ........++.|+|+
T Consensus 75 ~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pd 154 (345)
T PF10282_consen 75 TLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPD 154 (345)
T ss_dssp EEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TT
T ss_pred eeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCC
Confidence 4445555543445566899999999999987 489999999986 332222 10 012345789999999
Q ss_pred CCCCEEEEE-eCCCcEEEEEcCCCCCCCCCCCCCCCceeec-cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCC
Q 005506 105 TSDELVVSG-AGDAEVRLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (693)
Q Consensus 105 ~~~~~l~sg-s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~-~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~ 182 (693)
++++++. -....|++|++....+.. .....+. ......+.++|+|++..++++.-.++.|.++++....-
T Consensus 155 --g~~v~v~dlG~D~v~~~~~~~~~~~l------~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g 226 (345)
T PF10282_consen 155 --GRFVYVPDLGADRVYVYDIDDDTGKL------TPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDG 226 (345)
T ss_dssp --SSEEEEEETTTTEEEEEEE-TTS-TE------EEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred --CCEEEEEecCCCEEEEEEEeCCCceE------EEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCC
Confidence 5665554 345689999998643211 1122222 23456889999996666667777789999999873220
Q ss_pred CCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCC-CCCcccccCCCCC
Q 005506 183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPP 261 (693)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~-~~~~~~~~~~~~~ 261 (693)
. ......+-. +............|.++|++..++++......|.+|++... ..+..
T Consensus 227 ~-------~~~~~~~~~--------~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~-------- 283 (345)
T PF10282_consen 227 S-------LTEIQTIST--------LPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTL-------- 283 (345)
T ss_dssp E-------EEEEEEEES--------CETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEE--------
T ss_pred c-------eeEEEEeee--------ccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEE--------
Confidence 0 000011110 00011112367889999985444445556788999999432 11111
Q ss_pred CcccccccCccccCCCCccceEEEEEcCCCCEEEEEec-CCcEEEEECC
Q 005506 262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVN 309 (693)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~-Dg~V~lwdl~ 309 (693)
+..+ .. . +.....++|+|+|++|+++.. ++.|.+|+++
T Consensus 284 --~~~~---~~--~---G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 284 --VQTV---PT--G---GKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp --EEEE---EE--S---SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred --EEEE---eC--C---CCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 1111 00 1 113688999999999998886 6799999875
No 283
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.60 E-value=7.4e-06 Score=90.77 Aligned_cols=203 Identities=11% Similarity=0.074 Sum_probs=118.0
Q ss_pred cEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCC---CcEEEEEcCCCCCCCCCCCCCCCceeeccCCCC
Q 005506 73 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR 149 (693)
Q Consensus 73 ~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~D---g~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~ 149 (693)
.|.++|...+. ...+ ..+...+.+.+|+|+ ++.|+..+.+ ..|.+|++..+.. ..+......
T Consensus 180 ~l~~~d~~g~~-~~~l-~~~~~~~~~p~wSpD--G~~la~~s~~~~~~~l~~~~l~~g~~-----------~~l~~~~g~ 244 (430)
T PRK00178 180 TLQRSDYDGAR-AVTL-LQSREPILSPRWSPD--GKRIAYVSFEQKRPRIFVQNLDTGRR-----------EQITNFEGL 244 (430)
T ss_pred EEEEECCCCCC-ceEE-ecCCCceeeeeECCC--CCEEEEEEcCCCCCEEEEEECCCCCE-----------EEccCCCCC
Confidence 47788887544 3444 456778999999999 5777665543 3588889875421 122222334
Q ss_pred eEEEEEecCCCcEEEEEeCCC--cEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCC
Q 005506 150 VKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR 227 (693)
Q Consensus 150 V~~la~sp~~~~~l~Sgs~Dg--~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~ 227 (693)
+....|+|++..++++...+| .|.+||+.++... .+.. +........|+|++
T Consensus 245 ~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-----------------------~lt~---~~~~~~~~~~spDg 298 (430)
T PRK00178 245 NGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-----------------------RVTN---HPAIDTEPFWGKDG 298 (430)
T ss_pred cCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-----------------------Eccc---CCCCcCCeEECCCC
Confidence 556899996555555666666 5777788765311 1111 11223456899984
Q ss_pred CcEEEEEeCCC--cEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecC-C--c
Q 005506 228 PHLLLVGGSDA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG-E--H 302 (693)
Q Consensus 228 ~~~Latgs~Dg--~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~D-g--~ 302 (693)
..++.+...++ .|+++|+..++... + .+ .+. ......|+|+|++|+..+.+ + .
T Consensus 299 ~~i~f~s~~~g~~~iy~~d~~~g~~~~-----------l-t~-------~~~---~~~~~~~Spdg~~i~~~~~~~~~~~ 356 (430)
T PRK00178 299 RTLYFTSDRGGKPQIYKVNVNGGRAER-----------V-TF-------VGN---YNARPRLSADGKTLVMVHRQDGNFH 356 (430)
T ss_pred CEEEEEECCCCCceEEEEECCCCCEEE-----------e-ec-------CCC---CccceEECCCCCEEEEEEccCCceE
Confidence 43444443444 46666765543110 0 00 011 13457899999999877653 3 6
Q ss_pred EEEEECCCCCcceEEeecCCCceeEEeccCCCcccccC
Q 005506 303 VYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQP 340 (693)
Q Consensus 303 V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~ 340 (693)
|++||+.++....+. .........|+|+...+.+..
T Consensus 357 l~~~dl~tg~~~~lt--~~~~~~~p~~spdg~~i~~~~ 392 (430)
T PRK00178 357 VAAQDLQRGSVRILT--DTSLDESPSVAPNGTMLIYAT 392 (430)
T ss_pred EEEEECCCCCEEEcc--CCCCCCCceECCCCCEEEEEE
Confidence 899999986532222 222333457788766665543
No 284
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.60 E-value=1.7e-07 Score=102.18 Aligned_cols=163 Identities=16% Similarity=0.279 Sum_probs=122.1
Q ss_pred cEEEEEECCCC--CEEEEEeCCCcEEEEECCC--CcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCC
Q 005506 52 CVNAISWNSKG--SLLISGSDDTHINVWSYSS--RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 127 (693)
Q Consensus 52 ~V~~l~~s~~g--~~LaSgs~Dg~I~IWd~~~--~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~ 127 (693)
.|-...|++.. .+-++......-.||++.. .+.+.-+..+|...|+.+.|+|.. ...+++++.|..|+.||++.+
T Consensus 69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~-pdVlatcsvdt~vh~wd~rSp 147 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQH-PDVLATCSVDTYVHAWDMRSP 147 (1081)
T ss_pred hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCC-CcceeeccccccceeeeccCC
Confidence 46778898853 2333444445678999863 334444457999999999999987 689999999999999999965
Q ss_pred CCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceee
Q 005506 128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (693)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 207 (693)
. .++..+..-......++|+-.+++.+++ +....|++||+|.+..+
T Consensus 148 ~---------~p~ys~~~w~s~asqVkwnyk~p~vlas-shg~~i~vwd~r~gs~p------------------------ 193 (1081)
T KOG0309|consen 148 H---------RPFYSTSSWRSAASQVKWNYKDPNVLAS-SHGNDIFVWDLRKGSTP------------------------ 193 (1081)
T ss_pred C---------cceeeeecccccCceeeecccCcchhhh-ccCCceEEEeccCCCcc------------------------
Confidence 3 4566665556677889999888888854 55578999999987632
Q ss_pred ecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC
Q 005506 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 249 (693)
Q Consensus 208 l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~ 249 (693)
+....++...|+.++|+......+.+++.|++|+.||.....
T Consensus 194 l~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt 235 (1081)
T KOG0309|consen 194 LCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST 235 (1081)
T ss_pred eEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence 112223566788888887666789999999999999987543
No 285
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.59 E-value=2e-05 Score=84.60 Aligned_cols=260 Identities=12% Similarity=0.108 Sum_probs=151.1
Q ss_pred ccceeEEeccCCCcEEEEEECCCCCEEEEEeC----CCcEEEEECCCC--c--EEEEeccCCCcceEEEEEeeCCCCCEE
Q 005506 39 RLSQERELEGHQGCVNAISWNSKGSLLISGSD----DTHINVWSYSSR--K--LLHSIETGHSANVFCTKFVPETSDELV 110 (693)
Q Consensus 39 ~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~----Dg~I~IWd~~~~--~--~~~~l~~~h~~~I~sv~f~p~~~~~~l 110 (693)
.+.....+. -......|+++|++++|.+... ++.|..|.+... + .+... .........+++.|+ +++|
T Consensus 26 ~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~-~~~g~~p~~i~~~~~--g~~l 101 (345)
T PF10282_consen 26 TLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSV-PSGGSSPCHIAVDPD--GRFL 101 (345)
T ss_dssp EEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEE-EESSSCEEEEEECTT--SSEE
T ss_pred CceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeee-ccCCCCcEEEEEecC--CCEE
Confidence 344444433 3345667899999999998876 578999988764 2 33333 123345567899998 5776
Q ss_pred EEEe-CCCcEEEEEcCCCCCCCCCCCCCCCceeec----------cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 005506 111 VSGA-GDAEVRLFNLSRFSGRGLDDNAITPSALYQ----------CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (693)
Q Consensus 111 ~sgs-~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~----------~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~ 179 (693)
+++. .+|.|.++++... +... .....+. .-.....++.++|++..++++--....|.+|++..
T Consensus 102 ~vany~~g~v~v~~l~~~-g~l~-----~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~ 175 (345)
T PF10282_consen 102 YVANYGGGSVSVFPLDDD-GSLG-----EVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDD 175 (345)
T ss_dssp EEEETTTTEEEEEEECTT-SEEE-----EEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-T
T ss_pred EEEEccCCeEEEEEccCC-cccc-----eeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence 6665 5899999999863 2110 1111111 12345788999995555555555566899999876
Q ss_pred CCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC-CCcccccCC
Q 005506 180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRM 258 (693)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~-~~~~~~~~~ 258 (693)
.... ... ...+.+. .......+.|+|++...+++.-.++.|.+|++.... .+..
T Consensus 176 ~~~~-------l~~-~~~~~~~------------~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~----- 230 (345)
T PF10282_consen 176 DTGK-------LTP-VDSIKVP------------PGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTE----- 230 (345)
T ss_dssp TS-T-------EEE-EEEEECS------------TTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE-----
T ss_pred CCce-------EEE-eeccccc------------cCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeE-----
Confidence 5411 000 0011111 123567899999865556667778999999988221 1111
Q ss_pred CCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEec-CCcEEEEECCC--CCcceE--EeecCCCceeEEeccCC
Q 005506 259 SPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNH--AGGRAM--RYTVGDASKIMSFTPTL 333 (693)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~-Dg~V~lwdl~~--~~~~~~--~~~~~~~~~~~~~~p~~ 333 (693)
++..........+. .....|.++|||++|+++.. .+.|.+|++.. +....+ ....+..++.+.++|+.
T Consensus 231 -----~~~~~~~~~~~~~~--~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g 303 (345)
T PF10282_consen 231 -----IQTISTLPEGFTGE--NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDG 303 (345)
T ss_dssp -----EEEEESCETTSCSS--SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTS
T ss_pred -----EEEeeecccccccc--CCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCC
Confidence 11110000000111 14788999999999988775 78999999943 232222 22335668999999987
Q ss_pred CcccccC
Q 005506 334 NGLELQP 340 (693)
Q Consensus 334 ~g~~~~~ 340 (693)
+-+....
T Consensus 304 ~~l~Va~ 310 (345)
T PF10282_consen 304 RYLYVAN 310 (345)
T ss_dssp SEEEEEE
T ss_pred CEEEEEe
Confidence 7665444
No 286
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.59 E-value=1.3e-07 Score=66.44 Aligned_cols=38 Identities=39% Similarity=0.834 Sum_probs=36.6
Q ss_pred ceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEE
Q 005506 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS 78 (693)
Q Consensus 41 ~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd 78 (693)
+++++|++|.+.|++|+|+|++.+|+||+.|+.|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57889999999999999999999999999999999997
No 287
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.59 E-value=1.4e-06 Score=89.63 Aligned_cols=166 Identities=16% Similarity=0.190 Sum_probs=111.9
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcE----EEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCC
Q 005506 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL----LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 126 (693)
Q Consensus 51 ~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~----~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~ 126 (693)
..+..+..++++++||.+..+....++++..... +... .-...-+.+.|... ...+..+..-|.++-+|+-.
T Consensus 63 ~a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~--~v~~~~~ai~~~~~--~~sv~v~dkagD~~~~di~s 138 (390)
T KOG3914|consen 63 LAPALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS--CVPKRPTAISFIRE--DTSVLVADKAGDVYSFDILS 138 (390)
T ss_pred ccccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe--ecccCcceeeeeec--cceEEEEeecCCceeeeeec
Confidence 3455667788899999998888877777765432 2222 12233455666655 34444444444444444432
Q ss_pred CCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCcee
Q 005506 127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206 (693)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 206 (693)
... .+.....+|-+.++.|+|+| ++.+|+++..|..||+-........ +
T Consensus 139 ~~~--------~~~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~I------e---------------- 187 (390)
T KOG3914|consen 139 ADS--------GRCEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVI------E---------------- 187 (390)
T ss_pred ccc--------cCcchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccch------h----------------
Confidence 110 12334568999999999999 6688889999999998776543311 0
Q ss_pred eecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccc
Q 005506 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ 255 (693)
Q Consensus 207 ~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~ 255 (693)
...-+|...|..++.-++ ..|++|+.|++|++||+++++.+..+.
T Consensus 188 --sfclGH~eFVS~isl~~~--~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 188 --SFCLGHKEFVSTISLTDN--YLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred --hhccccHhheeeeeeccC--ceeeecCCCCcEEEEecccCCcccccc
Confidence 112367788999999985 579999999999999999999876654
No 288
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.58 E-value=4.4e-07 Score=80.70 Aligned_cols=109 Identities=14% Similarity=0.006 Sum_probs=92.8
Q ss_pred hhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCC---
Q 005506 364 RMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS--- 440 (693)
Q Consensus 364 ~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~--- 440 (693)
..+...|...++.|+ |..|++.|.+++...|.. ......+.+.+.++++.+ ++..|+.-+.+++..+|++
T Consensus 3 ~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~ 75 (119)
T TIGR02795 3 EAYYDAALLVLKAGD-YADAIQAFQAFLKKYPKS---TYAPNAHYWLGEAYYAQG---KYADAAKAFLAVVKKYPKSPKA 75 (119)
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCCc---cccHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHCCCCCcc
Confidence 345667888899999 999999999999987654 222456788999999964 4999999999999999986
Q ss_pred cchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHH
Q 005506 441 FRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAE 479 (693)
Q Consensus 441 ~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~ 479 (693)
..+++.+|.++..++++++|...+++++...|++..+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 76 PDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred cHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 568999999999999999999999999999999866543
No 289
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.55 E-value=2e-05 Score=95.91 Aligned_cols=245 Identities=12% Similarity=0.145 Sum_probs=137.6
Q ss_pred EEEEEECCCCCEEEEE-eCCCcEEEEECCCCcEEEEecc-CC---------------CcceEEEEEeeCCCCCEEEEEeC
Q 005506 53 VNAISWNSKGSLLISG-SDDTHINVWSYSSRKLLHSIET-GH---------------SANVFCTKFVPETSDELVVSGAG 115 (693)
Q Consensus 53 V~~l~~s~~g~~LaSg-s~Dg~I~IWd~~~~~~~~~l~~-~h---------------~~~I~sv~f~p~~~~~~l~sgs~ 115 (693)
...|++++++..|+++ .....|+++|+.++. +.++.. +. -...+.|+|+|+. +.++++.+.
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~-g~LyVad~~ 703 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVN-EKVYIAMAG 703 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCC-CeEEEEECC
Confidence 5788999888765554 455779999987654 333311 00 1134689999963 678888888
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCC-C---ceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCc
Q 005506 116 DAEVRLFNLSRFSGRGLDDNAIT-P---SALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ 191 (693)
Q Consensus 116 Dg~V~vwdl~~~~~~~~~~~~~~-~---~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~ 191 (693)
++.|++||............... . .......-.....|+++|++..++++-+.++.|++||+.++....... +..
T Consensus 704 ~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~g-g~~ 782 (1057)
T PLN02919 704 QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAG-GDP 782 (1057)
T ss_pred CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEe-ccc
Confidence 99999999875321000000000 0 000001123467799999666688888889999999988654110000 000
Q ss_pred ccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCc
Q 005506 192 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 271 (693)
Q Consensus 192 ~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (693)
.....+........ .. ..........++++|+ +.++++-..++.|++||..++........ ..+ .+..+.
T Consensus 783 ~~~~~l~~fG~~dG--~g-~~~~l~~P~Gvavd~d-G~LYVADs~N~rIrviD~~tg~v~tiaG~-G~~-----G~~dG~ 852 (1057)
T PLN02919 783 TFSDNLFKFGDHDG--VG-SEVLLQHPLGVLCAKD-GQIYVADSYNHKIKKLDPATKRVTTLAGT-GKA-----GFKDGK 852 (1057)
T ss_pred ccCcccccccCCCC--ch-hhhhccCCceeeEeCC-CcEEEEECCCCEEEEEECCCCeEEEEecc-CCc-----CCCCCc
Confidence 00000000000000 00 0001112357899997 67888888999999999876542211100 000 000000
Q ss_pred cccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCC
Q 005506 272 LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 272 ~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~ 312 (693)
. ..+.-. ....|+++++|+.+++.+.++.|++||+.++.
T Consensus 853 ~-~~a~l~-~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 853 A-LKAQLS-EPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred c-cccccC-CceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 0 001111 36789999999988888889999999999854
No 290
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=9.1e-07 Score=91.92 Aligned_cols=278 Identities=13% Similarity=0.110 Sum_probs=179.9
Q ss_pred CCcCcccccchhhh-cccceeEEeccCCCcEEEEEECCCCCEEEEEeC-CCcEEEEECCCCcEEEEeccCCCcceEEEEE
Q 005506 24 PDVNHSLQMHSSLV-RRLSQERELEGHQGCVNAISWNSKGSLLISGSD-DTHINVWSYSSRKLLHSIETGHSANVFCTKF 101 (693)
Q Consensus 24 ~~~~~~l~~~~~~i-~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~-Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f 101 (693)
.-.++.++.|...- ...+.++.+..|.+.|.+|+.+.+|.++.|++. |..++++|+.+-..+.-+....-- -.+.|
T Consensus 26 ASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP--g~a~w 103 (558)
T KOG0882|consen 26 ASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP--GFAEW 103 (558)
T ss_pred eecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCC--CceEE
Confidence 45667778877644 667778889999999999999999999999888 999999999876554333211111 12223
Q ss_pred eeCCCC---CEE-EEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 005506 102 VPETSD---ELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDF 177 (693)
Q Consensus 102 ~p~~~~---~~l-~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDl 177 (693)
.... | ..| ++...++.|.|+|-..... +....-.-|..+|..+.+.| ....++|....|.|.-|..
T Consensus 104 v~sk-Gd~~s~IAVs~~~sg~i~VvD~~~d~~--------q~~~fkklH~sPV~~i~y~q-a~Ds~vSiD~~gmVEyWs~ 173 (558)
T KOG0882|consen 104 VTSK-GDKISLIAVSLFKSGKIFVVDGFGDFC--------QDGYFKKLHFSPVKKIRYNQ-AGDSAVSIDISGMVEYWSA 173 (558)
T ss_pred ecCC-CCeeeeEEeecccCCCcEEECCcCCcC--------ccceecccccCceEEEEeec-cccceeeccccceeEeecC
Confidence 2221 2 133 3444678999999875421 23444556999999999999 5677889989999999987
Q ss_pred CCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccC
Q 005506 178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR 257 (693)
Q Consensus 178 r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~ 257 (693)
...-..+. ..+.|.+... ..+...++.....+++.|+|+ +..+.+-+.|..||+++.++++.+..+...
T Consensus 174 e~~~qfPr--------~~l~~~~K~e--TdLy~f~K~Kt~pts~Efsp~-g~qistl~~DrkVR~F~~KtGklvqeiDE~ 242 (558)
T KOG0882|consen 174 EGPFQFPR--------TNLNFELKHE--TDLYGFPKAKTEPTSFEFSPD-GAQISTLNPDRKVRGFVFKTGKLVQEIDEV 242 (558)
T ss_pred CCcccCcc--------cccccccccc--chhhcccccccCccceEEccc-cCcccccCcccEEEEEEeccchhhhhhhcc
Confidence 64111110 1122222221 134445556677889999998 788999899999999999999876655432
Q ss_pred CCCCCcccc--cccCcccc----------CCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCce
Q 005506 258 MSPPPCVNY--FCPMHLSE----------HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASK 325 (693)
Q Consensus 258 ~~~~~~~~~--~~~~~~~~----------~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~ 325 (693)
.....+... +...|... ..|....-+.+.|...|++|+-+.-=| |++.++.+.. ....+......+
T Consensus 243 ~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~-v~ri~gk~e~ir 320 (558)
T KOG0882|consen 243 LTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNT-VVRILGKDEAIR 320 (558)
T ss_pred chhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCe-EEEEeccchhhh
Confidence 211111100 00011100 123334567899999999999887643 8889998843 444444444444
Q ss_pred e
Q 005506 326 I 326 (693)
Q Consensus 326 ~ 326 (693)
.
T Consensus 321 ~ 321 (558)
T KOG0882|consen 321 F 321 (558)
T ss_pred h
Confidence 3
No 291
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.54 E-value=1.3e-07 Score=75.83 Aligned_cols=68 Identities=18% Similarity=0.148 Sum_probs=61.7
Q ss_pred hhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCC
Q 005506 362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS 438 (693)
Q Consensus 362 ~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p 438 (693)
.+..+...|..++..++ |..|+..|+++|+..|.. +.+|.|+|.||++++. ++..|+.++.+||+++|
T Consensus 2 ~a~~~~~~g~~~~~~~~-~~~A~~~~~~ai~~~p~~------~~~~~~~g~~~~~~~~--~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGD-YEEAIEYFEKAIELDPNN------AEAYYNLGLAYMKLGK--DYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHSTTH------HHHHHHHHHHHHHTTT--HHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhCc--cHHHHHHHHHHHHHcCc
Confidence 45678889999999999 999999999999999877 7899999999999751 49999999999999998
No 292
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=5.1e-05 Score=85.13 Aligned_cols=213 Identities=13% Similarity=0.167 Sum_probs=128.1
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcc-eEEEEEeeCCCCCEEEEEeCCCc-----EEEEEcC
Q 005506 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN-VFCTKFVPETSDELVVSGAGDAE-----VRLFNLS 125 (693)
Q Consensus 52 ~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~-I~sv~f~p~~~~~~l~sgs~Dg~-----V~vwdl~ 125 (693)
.|.| |++.+..+|.|+.+|.|.+.+- +.+.++.+ ..+... |..+..... ..+|++.+.|.. |+||+++
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~f-qa~~~siv~~L~~~~~--~~~L~sv~Ed~~~np~llkiw~le 100 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNS-SFQLIRGF-QAYEQSIVQFLYILNK--QNFLFSVGEDEQGNPVLLKIWDLE 100 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEecc-cceeeehh-eecchhhhhHhhcccC--ceEEEEEeecCCCCceEEEEeccc
Confidence 5655 6788899999999999888873 34444666 566655 444433333 367888777654 8999998
Q ss_pred CCCCCCCCCCCCCCc--eeec-----cCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEE
Q 005506 126 RFSGRGLDDNAITPS--ALYQ-----CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (693)
Q Consensus 126 ~~~~~~~~~~~~~~~--~~~~-----~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~ 198 (693)
...+.. +..++ .... ....++.+|+++. +-..++.|-.+|.|.++.-.-.+- .+....+
T Consensus 101 k~~~n~----sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RD---------rgsr~~~ 166 (933)
T KOG2114|consen 101 KVDKNN----SPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRD---------RGSRQDY 166 (933)
T ss_pred ccCCCC----CcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhc---------cccceee
Confidence 653221 01222 0111 1356788899988 578899999999999885321110 0001111
Q ss_pred eccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCC
Q 005506 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (693)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (693)
......+|+.+++..++...+.++ .-..|.+|.+....|. .++ ..+.
T Consensus 167 ------------~~~~~~pITgL~~~~d~~s~lFv~-Tt~~V~~y~l~gr~p~----------~~~----------ld~~ 213 (933)
T KOG2114|consen 167 ------------SHRGKEPITGLALRSDGKSVLFVA-TTEQVMLYSLSGRTPS----------LKV----------LDNN 213 (933)
T ss_pred ------------eccCCCCceeeEEecCCceeEEEE-ecceeEEEEecCCCcc----------eee----------eccC
Confidence 112346899999988743323333 3457889988732211 110 1234
Q ss_pred ccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEee
Q 005506 279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYT 319 (693)
Q Consensus 279 ~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~ 319 (693)
+..+.+.+|++....++++ .+..|++|+... ..+...+.
T Consensus 214 G~~lnCss~~~~t~qfIca-~~e~l~fY~sd~-~~~cfaf~ 252 (933)
T KOG2114|consen 214 GISLNCSSFSDGTYQFICA-GSEFLYFYDSDG-RGPCFAFE 252 (933)
T ss_pred CccceeeecCCCCccEEEe-cCceEEEEcCCC-cceeeeec
Confidence 4468888888766645544 356799999886 33444444
No 293
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.51 E-value=1.9e-07 Score=100.48 Aligned_cols=94 Identities=18% Similarity=0.086 Sum_probs=46.0
Q ss_pred hhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHHHH
Q 005506 373 SLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALE 452 (693)
Q Consensus 373 ~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~KA~~r~a~al~ 452 (693)
++++|. .+.||..|.+||+..|.. ...|+|.|.|+-- .|+..+|.+-.++||.+.|+++.|++.+|.++.
T Consensus 296 YyeqG~-ldlAI~~Ykral~~~P~F------~~Ay~NlanALkd---~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~ 365 (966)
T KOG4626|consen 296 YYEQGL-LDLAIDTYKRALELQPNF------PDAYNNLANALKD---KGSVTEAVDCYNKALRLCPNHADAMNNLGNIYR 365 (966)
T ss_pred Eecccc-HHHHHHHHHHHHhcCCCc------hHHHhHHHHHHHh---ccchHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 334444 444444444444444443 3445555544333 234555555555555555555555555555555
Q ss_pred HhccHHHHHHHHHHHcccCCCCch
Q 005506 453 QLCKYKEALDFAIAAQCLDPSNSV 476 (693)
Q Consensus 453 ~l~~~~eA~~~~~~~~~~~p~~~~ 476 (693)
+.|++++|...|.++++.+|+.++
T Consensus 366 E~~~~e~A~~ly~~al~v~p~~aa 389 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALEVFPEFAA 389 (966)
T ss_pred HhccchHHHHHHHHHHhhChhhhh
Confidence 555555555555555555554433
No 294
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.49 E-value=4.8e-07 Score=107.26 Aligned_cols=152 Identities=18% Similarity=0.250 Sum_probs=118.1
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEe---CCCcEEEEEcCCC
Q 005506 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA---GDAEVRLFNLSRF 127 (693)
Q Consensus 51 ~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs---~Dg~V~vwdl~~~ 127 (693)
..|+.+.|+.+|+.+..+..||.+.+|... .+..... ..|.....++.|.. ..+++++ .++.+.+||...+
T Consensus 2252 s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~-qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~ 2325 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSW-QCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLP 2325 (2439)
T ss_pred chhhhhhhcccCCceeeeccCCceeecccC-Ccceecc-ccCCccccceeeee----hhhhccccCCCCCcccchhcccC
Confidence 677888899999999999999999999987 4444444 67888899999986 3677765 4688999998764
Q ss_pred CCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceee
Q 005506 128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 207 (693)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 207 (693)
... ..+. .+|...++++++.| ...+|+|||.+|.|++||+|..+..
T Consensus 2326 ~~~-------s~v~--~~H~~gaT~l~~~P-~~qllisggr~G~v~l~D~rqrql~------------------------ 2371 (2439)
T KOG1064|consen 2326 PMN-------SLVH--TCHDGGATVLAYAP-KHQLLISGGRKGEVCLFDIRQRQLR------------------------ 2371 (2439)
T ss_pred ccc-------ceee--eecCCCceEEEEcC-cceEEEecCCcCcEEEeehHHHHHH------------------------
Confidence 321 1233 78999999999999 6789999999999999999986522
Q ss_pred ecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCccc
Q 005506 208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC 254 (693)
Q Consensus 208 l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~ 254 (693)
|.... ++ . ..+|++|+..|.|+||++.....+.++
T Consensus 2372 ------h~~~~----~~-~-~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2372 ------HTFQA----LD-T-REYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred ------HHhhh----hh-h-hheeeccCcccceEEEEccccchhhcC
Confidence 11111 33 2 469999999999999999876555444
No 295
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.48 E-value=7.3e-07 Score=78.00 Aligned_cols=106 Identities=20% Similarity=0.037 Sum_probs=91.1
Q ss_pred CcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCC
Q 005506 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS 438 (693)
Q Consensus 359 ~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p 438 (693)
..+....+.-+|...-+.|+ ...|++.|+++|.++|.. +..|.|||.+|--. ||..+|+.|.++||+|..
T Consensus 39 ~~e~S~~LEl~~valaE~g~-Ld~AlE~F~qal~l~P~r------aSayNNRAQa~RLq---~~~e~ALdDLn~AleLag 108 (175)
T KOG4555|consen 39 AIKASRELELKAIALAEAGD-LDGALELFGQALCLAPER------ASAYNNRAQALRLQ---GDDEEALDDLNKALELAG 108 (175)
T ss_pred HHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHhcccc------hHhhccHHHHHHHc---CChHHHHHHHHHHHHhcC
Confidence 44556677888888889999 999999999999999887 88999999999663 569999999999999976
Q ss_pred CCcc----hhhhHHHHHHHhccHHHHHHHHHHHcccCCCC
Q 005506 439 SSFR----AHLYMSEALEQLCKYKEALDFAIAAQCLDPSN 474 (693)
Q Consensus 439 ~~~K----A~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~ 474 (693)
.-.| ||..|+..|..+|+-+.|..+|..+.++-...
T Consensus 109 ~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 109 DQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred ccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHH
Confidence 5544 78899999999999999999999888775543
No 296
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.48 E-value=1.5e-05 Score=88.57 Aligned_cols=201 Identities=8% Similarity=0.055 Sum_probs=113.2
Q ss_pred cEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeC-CC--cEEEEEcCCCCCCCCCCCCCCCceeeccCCCC
Q 005506 73 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-DA--EVRLFNLSRFSGRGLDDNAITPSALYQCHTRR 149 (693)
Q Consensus 73 ~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~-Dg--~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~ 149 (693)
.|.++|...... +.+ ..+...+.+..|+|+ |+.|+..+. ++ .|.+||+..... ..+..+ ...
T Consensus 199 ~l~i~d~dG~~~-~~l-~~~~~~~~~p~wSPD--G~~La~~s~~~g~~~L~~~dl~tg~~--------~~lt~~---~g~ 263 (448)
T PRK04792 199 QLMIADYDGYNE-QML-LRSPEPLMSPAWSPD--GRKLAYVSFENRKAEIFVQDIYTQVR--------EKVTSF---PGI 263 (448)
T ss_pred EEEEEeCCCCCc-eEe-ecCCCcccCceECCC--CCEEEEEEecCCCcEEEEEECCCCCe--------EEecCC---CCC
Confidence 577778765443 334 456778999999999 576665543 33 478888875321 112222 223
Q ss_pred eEEEEEecCCCcEEEEEeCCCc--EEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCC
Q 005506 150 VKKLAVEVGNPHVVWSASEDGT--LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR 227 (693)
Q Consensus 150 V~~la~sp~~~~~l~Sgs~Dg~--V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~ 227 (693)
....+|+|++..++++.+.+|. |.+||+.+++.. .+.. +.......+|+|++
T Consensus 264 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-----------------------~lt~---~~~~~~~p~wSpDG 317 (448)
T PRK04792 264 NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-----------------------RITR---HRAIDTEPSWHPDG 317 (448)
T ss_pred cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-----------------------ECcc---CCCCccceEECCCC
Confidence 4468999966556667777775 666677654311 1111 11234567899984
Q ss_pred CcEEE-EEeCCCc--EEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEec-CC--
Q 005506 228 PHLLL-VGGSDAF--ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GE-- 301 (693)
Q Consensus 228 ~~~La-tgs~Dg~--IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~-Dg-- 301 (693)
..|+ +...++. |+++|+.+++... + ++ .+. .....+|+|||++|+..+. ++
T Consensus 318 -~~I~f~s~~~g~~~Iy~~dl~~g~~~~-----------L-t~-------~g~---~~~~~~~SpDG~~l~~~~~~~g~~ 374 (448)
T PRK04792 318 -KSLIFTSERGGKPQIYRVNLASGKVSR-----------L-TF-------EGE---QNLGGSITPDGRSMIMVNRTNGKF 374 (448)
T ss_pred -CEEEEEECCCCCceEEEEECCCCCEEE-----------E-ec-------CCC---CCcCeeECCCCCEEEEEEecCCce
Confidence 5554 4444444 5556665443110 0 00 111 1235689999999887655 33
Q ss_pred cEEEEECCCCCcceEEeecCCCceeEEeccCCCccccc
Q 005506 302 HVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQ 339 (693)
Q Consensus 302 ~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~ 339 (693)
.|+++|+.++.... . ..........|+|+...+.+.
T Consensus 375 ~I~~~dl~~g~~~~-l-t~~~~d~~ps~spdG~~I~~~ 410 (448)
T PRK04792 375 NIARQDLETGAMQV-L-TSTRLDESPSVAPNGTMVIYS 410 (448)
T ss_pred EEEEEECCCCCeEE-c-cCCCCCCCceECCCCCEEEEE
Confidence 57778888754322 2 212222344677776665443
No 297
>PRK15331 chaperone protein SicA; Provisional
Probab=98.47 E-value=1.4e-06 Score=80.59 Aligned_cols=123 Identities=11% Similarity=-0.053 Sum_probs=101.0
Q ss_pred cccccccccccCcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHH
Q 005506 348 TNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAI 427 (693)
Q Consensus 348 ~~~~~~~~~~~~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al 427 (693)
.|..+........+..+.+-..|-..+..|+ |.+|...|.-..-+.+.+ +..+...|+|+...+. |..|+
T Consensus 22 ~G~tlk~l~gis~~~le~iY~~Ay~~y~~Gk-~~eA~~~F~~L~~~d~~n------~~Y~~GLaa~~Q~~k~---y~~Ai 91 (165)
T PRK15331 22 EGATLKDVHGIPQDMMDGLYAHAYEFYNQGR-LDEAETFFRFLCIYDFYN------PDYTMGLAAVCQLKKQ---FQKAC 91 (165)
T ss_pred CCCCHHHHhCCCHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCcCc------HHHHHHHHHHHHHHHH---HHHHH
Confidence 3333333334455667888899999999999 999999998777766655 6788899999988766 99999
Q ss_pred HhHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHH
Q 005506 428 RDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKV 481 (693)
Q Consensus 428 ~Dc~~Al~l~p~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~ 481 (693)
.-...|.-++++++.++|+.|+|++.||+..+|+.+|..++. .|++..+++..
T Consensus 92 ~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A 144 (165)
T PRK15331 92 DLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKA 144 (165)
T ss_pred HHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHH
Confidence 999999999999999999999999999999999999999988 46665544333
No 298
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.45 E-value=6e-07 Score=96.79 Aligned_cols=103 Identities=17% Similarity=0.074 Sum_probs=90.0
Q ss_pred hHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchh
Q 005506 365 MLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAH 444 (693)
Q Consensus 365 ~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~KA~ 444 (693)
.....|.-+-++|+ +.+||.+|.+||...|.. +..|+|++..|-.. ||..+|+++..+||.++|.+..||
T Consensus 390 a~nNLa~i~kqqgn-l~~Ai~~YkealrI~P~f------Ada~~NmGnt~ke~---g~v~~A~q~y~rAI~~nPt~AeAh 459 (966)
T KOG4626|consen 390 AHNNLASIYKQQGN-LDDAIMCYKEALRIKPTF------ADALSNMGNTYKEM---GDVSAAIQCYTRAIQINPTFAEAH 459 (966)
T ss_pred hhhhHHHHHHhccc-HHHHHHHHHHHHhcCchH------HHHHHhcchHHHHh---hhHHHHHHHHHHHHhcCcHHHHHH
Confidence 33334444556788 999999999999988877 88899999998774 669999999999999999999999
Q ss_pred hhHHHHHHHhccHHHHHHHHHHHcccCCCCchh
Q 005506 445 LYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 477 (693)
Q Consensus 445 ~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~ 477 (693)
-.+|-++-..|...+|+..|++++++.|+..++
T Consensus 460 sNLasi~kDsGni~~AI~sY~~aLklkPDfpdA 492 (966)
T KOG4626|consen 460 SNLASIYKDSGNIPEAIQSYRTALKLKPDFPDA 492 (966)
T ss_pred hhHHHHhhccCCcHHHHHHHHHHHccCCCCchh
Confidence 999999999999999999999999999998765
No 299
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.44 E-value=4.3e-06 Score=93.77 Aligned_cols=186 Identities=16% Similarity=0.210 Sum_probs=135.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCc
Q 005506 61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS 140 (693)
Q Consensus 61 ~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~ 140 (693)
++..++-|+-...+..+|+.+.+..+... -..+.|+-++.+ ++++.+|...|+|.+-|.+.. +++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~-v~a~~v~imR~N----nr~lf~G~t~G~V~LrD~~s~----------~~i 210 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTN-VSASGVTIMRYN----NRNLFCGDTRGTVFLRDPNSF----------ETI 210 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeee-ccCCceEEEEec----CcEEEeecccceEEeecCCcC----------cee
Confidence 45677778777788999998877666552 223346666553 579999999999999999865 779
Q ss_pred eeeccCCCCeEEEEEecCCCcEEEEEeC---------CCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCC
Q 005506 141 ALYQCHTRRVKKLAVEVGNPHVVWSASE---------DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP 211 (693)
Q Consensus 141 ~~~~~h~~~V~~la~sp~~~~~l~Sgs~---------Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 211 (693)
+++.+|++.|.++.+ .+++|+|+|. |.-|++||+|..+..+++...
T Consensus 211 ht~~aHs~siSDfDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~---------------------- 265 (1118)
T KOG1275|consen 211 HTFDAHSGSISDFDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP---------------------- 265 (1118)
T ss_pred eeeeccccceeeeec---cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc----------------------
Confidence 999999999999887 4678889875 556899999987654332211
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCC
Q 005506 212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG 291 (693)
Q Consensus 212 ~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg 291 (693)
..-.-+.|+|.=...+++++..|...+-|...... |+.-+.++.| .+..++.+.+|++|
T Consensus 266 ----~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN---------P~~~~~~v~p--------~~s~i~~fDiSsn~ 324 (1118)
T KOG1275|consen 266 ----YGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN---------PPAGVKMVNP--------NGSGISAFDISSNG 324 (1118)
T ss_pred ----cCchhhhhcccccceEEEEecccceeeccccccCC---------CccceeEEcc--------CCCcceeEEecCCC
Confidence 11133567887778899999999999998554321 1111222211 11138999999999
Q ss_pred CEEEEEecCCcEEEEE
Q 005506 292 EEVLLSYSGEHVYLMD 307 (693)
Q Consensus 292 ~~L~sgs~Dg~V~lwd 307 (693)
..|+.|..+|.|.+|-
T Consensus 325 ~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 325 DALAFGDHEGHVNLWA 340 (1118)
T ss_pred ceEEEecccCcEeeec
Confidence 9999999999999998
No 300
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.44 E-value=4.1e-05 Score=76.21 Aligned_cols=196 Identities=13% Similarity=0.106 Sum_probs=118.0
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCC------CcceEEEEEeeCCCC----CEEEEEeCCCcEEE
Q 005506 52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGH------SANVFCTKFVPETSD----ELVVSGAGDAEVRL 121 (693)
Q Consensus 52 ~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h------~~~I~sv~f~p~~~~----~~l~sgs~Dg~V~v 121 (693)
.=..++|+||+.+||.+...|+|+++|+.. ..+..+..++ ...|..+.|.+.... ..|+.-..+|.++-
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 456799999999999999999999999874 4444443222 356778888765211 24556667888888
Q ss_pred EEcCCCCCCCCCCCCCCCcee--ecc-CCCCeEEEEEecCCCcEEEEEeC-CC----------cEEEEeCCCCCCCCC-C
Q 005506 122 FNLSRFSGRGLDDNAITPSAL--YQC-HTRRVKKLAVEVGNPHVVWSASE-DG----------TLRQHDFRQGSSCPP-A 186 (693)
Q Consensus 122 wdl~~~~~~~~~~~~~~~~~~--~~~-h~~~V~~la~sp~~~~~l~Sgs~-Dg----------~V~lwDlr~~~~~~~-~ 186 (693)
|-+..+.... ...... +.. +...|.++.++| .-++|+.||. .. -+.-|-+-...+--. .
T Consensus 124 y~vs~gt~q~-----y~e~hsfsf~~~yp~Gi~~~vy~p-~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v 197 (282)
T PF15492_consen 124 YLVSVGTNQG-----YQENHSFSFSSHYPHGINSAVYHP-KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQV 197 (282)
T ss_pred EEEEcccCCc-----ceeeEEEEecccCCCceeEEEEcC-CCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEc
Confidence 8774321111 122222 222 467899999999 4456656553 22 244555544332100 0
Q ss_pred CCCCccc-----ceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccC
Q 005506 187 GSSHQEC-----RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR 257 (693)
Q Consensus 187 ~~~~~~~-----~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~ 257 (693)
....... +.-++.+.+ .............|..|.+||+ +.+||+...+|.|.+|++.++....++...
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~--~~~fs~~~~~~d~i~kmSlSPd-g~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 198 TSSEDDITASSKRRGLLRIPS--FKFFSRQGQEQDGIFKMSLSPD-GSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred cccCccccccccccceeeccc--eeeeeccccCCCceEEEEECCC-CCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 0000000 001111111 0011111234567999999997 789999999999999999998877776543
No 301
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.43 E-value=1.6e-05 Score=77.76 Aligned_cols=199 Identities=13% Similarity=0.015 Sum_probs=132.3
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEeccCCCc--ceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCce
Q 005506 64 LLISGSDDTHINVWSYSSRKLLHSIETGHSA--NVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA 141 (693)
Q Consensus 64 ~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~--~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~ 141 (693)
.+..++.|.++++.++.-+..-..+ |.. .++++.++|+ +.++++.+....|..|.+...+... +.
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~---h~~~~~~ns~~~snd--~~~~~~Vgds~~Vf~y~id~~sey~--------~~ 196 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAV---HNQNLTQNSLHYSND--PSWGSSVGDSRRVFRYAIDDESEYI--------EN 196 (344)
T ss_pred ceeeccCCcceeEEEEecCccccee---eccccceeeeEEcCC--CceEEEecCCCcceEEEeCCcccee--------ee
Confidence 4556677788888777643322222 333 3889999998 6999999999999999998654322 22
Q ss_pred -eeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEE
Q 005506 142 -LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS 220 (693)
Q Consensus 142 -~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~s 220 (693)
.....++.=.+..|+. ....||++..||++.|||+|....+... .-...+.|...+..
T Consensus 197 ~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm~~--------------------~sstrp~hnGa~R~ 255 (344)
T KOG4532|consen 197 IYEAPTSDHGFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMATPMAE--------------------ISSTRPHHNGAFRV 255 (344)
T ss_pred eEecccCCCceeeeecc-CcceEEEEecCCcEEEEEecccccchhh--------------------hcccCCCCCCceEE
Confidence 2222344456678887 5679999999999999999986533111 11223457889999
Q ss_pred EEEcCCCC-cEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEec
Q 005506 221 CDISSTRP-HLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS 299 (693)
Q Consensus 221 l~~sp~~~-~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~ 299 (693)
+.|+|-+. .+|...-.-+.+.+.|+|++.....+.. ..-....|....|..-.|+.++.-+.+...
T Consensus 256 c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i-------------~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e 322 (344)
T KOG4532|consen 256 CRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVI-------------PDDVERKHNTQHIFGTNFNNENESNDVKNE 322 (344)
T ss_pred EEecCCCcceEEEEecCcceEEEEEcccCceeeEEec-------------CccccccccccccccccccCCCcccccccc
Confidence 99998433 3555666678999999999865433221 111122344445888889988887776665
Q ss_pred CCcEEEEECCC
Q 005506 300 GEHVYLMDVNH 310 (693)
Q Consensus 300 Dg~V~lwdl~~ 310 (693)
+ +++-|++.+
T Consensus 323 ~-~~ae~ni~s 332 (344)
T KOG4532|consen 323 L-QGAEYNILS 332 (344)
T ss_pred h-hhheeeccc
Confidence 4 566777776
No 302
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.39 E-value=0.00017 Score=76.32 Aligned_cols=239 Identities=13% Similarity=0.137 Sum_probs=131.4
Q ss_pred cccceeEEeccCCCcEEEEEECCCCCEEEEEeC----------CCcEEEEECCCCcEEEEeccCCC------cceEEEEE
Q 005506 38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSD----------DTHINVWSYSSRKLLHSIETGHS------ANVFCTKF 101 (693)
Q Consensus 38 ~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~----------Dg~I~IWd~~~~~~~~~l~~~h~------~~I~sv~f 101 (693)
..++.+.++..-..+- .+ ++|+|+.|.++.. +..|.|||+.+.+.+..+..+-. .....+++
T Consensus 35 ~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~l 112 (352)
T TIGR02658 35 EAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSL 112 (352)
T ss_pred CCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEE
Confidence 3455566665332222 24 9999998887755 77899999999999988853321 12336788
Q ss_pred eeCCCCCEEEEEe-C-CCcEEEEEcCCCCCCCCCCCCCCCceeecc---------C-------------CCCeEEE----
Q 005506 102 VPETSDELVVSGA-G-DAEVRLFNLSRFSGRGLDDNAITPSALYQC---------H-------------TRRVKKL---- 153 (693)
Q Consensus 102 ~p~~~~~~l~sgs-~-Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~---------h-------------~~~V~~l---- 153 (693)
+|+ |++|+... . +..|-+.|+....-...-... .+...+.. - ...+...
T Consensus 113 s~d--gk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp-~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~ 189 (352)
T TIGR02658 113 TPD--NKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP-DCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFH 189 (352)
T ss_pred CCC--CCEEEEecCCCCCEEEEEECCCCcEEEEEeCC-CCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeec
Confidence 998 67777655 3 789999999853211000000 00000000 0 0000110
Q ss_pred ----------EEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEE
Q 005506 154 ----------AVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI 223 (693)
Q Consensus 154 ----------a~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~ 223 (693)
.|.+.++.+++...+ |+|.+.|+....... ...|.+-+-.... ..-....+.-+++
T Consensus 190 ~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~----------~~~~~~~~~~~~~---~~wrP~g~q~ia~ 255 (352)
T TIGR02658 190 PEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKF----------LPAIEAFTEAEKA---DGWRPGGWQQVAY 255 (352)
T ss_pred CCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCccee----------cceeeeccccccc---cccCCCcceeEEE
Confidence 123324455555555 777777754432110 0001000000000 0001222334999
Q ss_pred cCCCCcEEEEEe---------CCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCC-E
Q 005506 224 SSTRPHLLLVGG---------SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-E 293 (693)
Q Consensus 224 sp~~~~~Latgs---------~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~-~ 293 (693)
+|+++.+++... ..+.|.++|..+.+.+..+. .+..+..|+|+|||+ +
T Consensus 256 ~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~----------------------vG~~~~~iavS~Dgkp~ 313 (352)
T TIGR02658 256 HRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE----------------------LGHEIDSINVSQDAKPL 313 (352)
T ss_pred cCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe----------------------CCCceeeEEECCCCCeE
Confidence 998554444331 22579999998876544331 111478999999999 8
Q ss_pred EEEEe-cCCcEEEEECCCCCcceEE
Q 005506 294 VLLSY-SGEHVYLMDVNHAGGRAMR 317 (693)
Q Consensus 294 L~sgs-~Dg~V~lwdl~~~~~~~~~ 317 (693)
|++.. .++.|.++|+.+++.....
T Consensus 314 lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 314 LYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEeCCCCCcEEEEECcCCeEEeee
Confidence 88666 4889999999996544443
No 303
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.39 E-value=2.2e-06 Score=71.27 Aligned_cols=98 Identities=24% Similarity=0.213 Sum_probs=86.9
Q ss_pred HHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhh
Q 005506 366 LVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHL 445 (693)
Q Consensus 366 lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~KA~~ 445 (693)
+...|...+..|+ |..|+..+.++++..|.. ..++.++|.+|...+ ++.+|+..+.+++++.|.+..+++
T Consensus 3 ~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~ 72 (100)
T cd00189 3 LLNLGNLYYKLGD-YDEALEYYEKALELDPDN------ADAYYNLAAAYYKLG---KYEEALEDYEKALELDPDNAKAYY 72 (100)
T ss_pred HHHHHHHHHHHhc-HHHHHHHHHHHHhcCCcc------HHHHHHHHHHHHHHH---HHHHHHHHHHHHHhCCCcchhHHH
Confidence 3456777888899 999999999999988765 467889999999864 499999999999999999999999
Q ss_pred hHHHHHHHhccHHHHHHHHHHHcccCCC
Q 005506 446 YMSEALEQLCKYKEALDFAIAAQCLDPS 473 (693)
Q Consensus 446 r~a~al~~l~~~~eA~~~~~~~~~~~p~ 473 (693)
.++.++..++++++|.+.++.++...|.
T Consensus 73 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 73 NLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999888773
No 304
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.39 E-value=1.4e-06 Score=84.79 Aligned_cols=167 Identities=20% Similarity=0.216 Sum_probs=104.6
Q ss_pred CCCCEEEEEeC-----CCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCC
Q 005506 60 SKGSLLISGSD-----DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD 134 (693)
Q Consensus 60 ~~g~~LaSgs~-----Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 134 (693)
..++++.++.- -+..++|++...+.+..-.. ....|.+++-+|.. .+++++|+.||.|-+||.+...
T Consensus 142 ~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~-~~~~v~~l~~hp~q-q~~v~cgt~dg~~~l~d~rn~~------ 213 (319)
T KOG4714|consen 142 RHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK-ALDAVTALCSHPAQ-QHLVCCGTDDGIVGLWDARNVA------ 213 (319)
T ss_pred ecccEEecCCcceEeeccceeeeccccccccccccc-ccccchhhhCCccc-ccEEEEecCCCeEEEEEccccc------
Confidence 34555554421 23455666654332221111 22349999999986 6899999999999999999753
Q ss_pred CCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEecc---CCceeeecCC
Q 005506 135 NAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR---CGAKRSLADP 211 (693)
Q Consensus 135 ~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~l~~~ 211 (693)
.+...++.|+..+..+-|+|.+|..|+++++||.+.-||..+.-. ....+......|-.. ......-...
T Consensus 214 ---~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l----~i~~~~s~~s~WLsgD~v~s~i~i~~ll 286 (319)
T KOG4714|consen 214 ---MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFL----SISNQASVISSWLSGDPVKSRIEITSLL 286 (319)
T ss_pred ---chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceE----EecCccccccccccCCcccceEeeeccc
Confidence 568888999999999999999999999999999999999874210 011111111111000 0000001112
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 005506 212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD 244 (693)
Q Consensus 212 ~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD 244 (693)
+.....|+++.+. +..|++|+.-+.|++++
T Consensus 287 ~~~~~SinsfDV~---g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 287 PSRSLSINSFDVL---GPCLVCGTDAEAIYLTR 316 (319)
T ss_pred cccceeeeeeecc---CceEEeccccceEEEec
Confidence 2233455666555 34799999889998875
No 305
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.38 E-value=9.5e-05 Score=90.01 Aligned_cols=230 Identities=12% Similarity=0.095 Sum_probs=132.9
Q ss_pred EEEEECC-CCCEEEEEeCCCcEEEEECCCCcEEEEecc-CC------------CcceEEEEEeeCCCCCEE-EEEeCCCc
Q 005506 54 NAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIET-GH------------SANVFCTKFVPETSDELV-VSGAGDAE 118 (693)
Q Consensus 54 ~~l~~s~-~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~-~h------------~~~I~sv~f~p~~~~~~l-~sgs~Dg~ 118 (693)
..+++++ ++.++++-+.+++|.+||.. +..+..+.. +. -.....|++.++ ++.| ++-...+.
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~--gn~LYVaDt~n~~ 647 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAK--KNLLYVADTENHA 647 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCC--CCEEEEEeCCCce
Confidence 3578876 46678888888999999985 455544421 11 123578999987 4544 44445678
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeecc-----------------CCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCC
Q 005506 119 VRLFNLSRFSGRGLDDNAITPSALYQC-----------------HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS 181 (693)
Q Consensus 119 V~vwdl~~~~~~~~~~~~~~~~~~~~~-----------------h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~ 181 (693)
|+++|+.... +.++.+ .-.....|+++|.++.++++.+.++.|++||...+.
T Consensus 648 Ir~id~~~~~-----------V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~ 716 (1057)
T PLN02919 648 LREIDFVNET-----------VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV 716 (1057)
T ss_pred EEEEecCCCE-----------EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence 9999986431 111110 012346899999777888898899999999987653
Q ss_pred CCCCCCCCCcccceEEEeccCCceeeec---CCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCC
Q 005506 182 SCPPAGSSHQECRNILLDLRCGAKRSLA---DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRM 258 (693)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~---~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~ 258 (693)
.. .+. ..+...... ...........|+++|++..++++-+.++.|++||+.++..........
T Consensus 717 v~-------------~~~-G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~ 782 (1057)
T PLN02919 717 TR-------------VFS-GDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDP 782 (1057)
T ss_pred EE-------------EEe-cCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccc
Confidence 11 000 000000000 0001112456799999855567777778999999988653210000000
Q ss_pred CCCCcccccccCc-cccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCC
Q 005506 259 SPPPCVNYFCPMH-LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 259 ~~~~~~~~~~~~~-~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~ 312 (693)
..+..+..+-... ......- .....++|+++|..+++-+.++.|++||..++.
T Consensus 783 ~~~~~l~~fG~~dG~g~~~~l-~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~ 836 (1057)
T PLN02919 783 TFSDNLFKFGDHDGVGSEVLL-QHPLGVLCAKDGQIYVADSYNHKIKKLDPATKR 836 (1057)
T ss_pred ccCcccccccCCCCchhhhhc-cCCceeeEeCCCcEEEEECCCCEEEEEECCCCe
Confidence 0000000000000 0000000 124689999999988888889999999998753
No 306
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.38 E-value=4.6e-06 Score=90.97 Aligned_cols=245 Identities=13% Similarity=0.126 Sum_probs=152.3
Q ss_pred hhcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEe-ccCCCcceEEEEEeeCCCCCEEEEEe
Q 005506 36 LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI-ETGHSANVFCTKFVPETSDELVVSGA 114 (693)
Q Consensus 36 ~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l-~~~h~~~I~sv~f~p~~~~~~l~sgs 114 (693)
....+..-++|+||.+.|.-+.|+.+.+.|-|...+|.|.||=+..+.....+ .....+.|.+++|+.+ |..++..-
T Consensus 57 a~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~d--G~kIcIvY 134 (1189)
T KOG2041|consen 57 AASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLD--GTKICIVY 134 (1189)
T ss_pred cccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCC--CcEEEEEE
Confidence 45677788899999999999999999999999999999999999887655433 2345678999999988 78999999
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccc
Q 005506 115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 194 (693)
Q Consensus 115 ~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~ 194 (693)
.||.|.|=.+..+. .. -+.++ ..-...+.|++ +...+..+-..|.+++||....-.. ..+..|.
T Consensus 135 eDGavIVGsvdGNR--Iw-------gKeLk--g~~l~hv~ws~-D~~~~Lf~~ange~hlydnqgnF~~----Kl~~~c~ 198 (1189)
T KOG2041|consen 135 EDGAVIVGSVDGNR--IW-------GKELK--GQLLAHVLWSE-DLEQALFKKANGETHLYDNQGNFER----KLEKDCE 198 (1189)
T ss_pred ccCCEEEEeeccce--ec-------chhcc--hheccceeecc-cHHHHHhhhcCCcEEEecccccHHH----hhhhceE
Confidence 99999887665321 00 01111 12234678999 4455657778899999997653211 1112222
Q ss_pred eEEEeccCCceeeecCCCCCccceEEEEEc--------CCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccc
Q 005506 195 NILLDLRCGAKRSLADPPKQTLSLKSCDIS--------STRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266 (693)
Q Consensus 195 ~~l~~~~~~~~~~l~~~~~~~~~v~sl~~s--------p~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~ 266 (693)
.......++ ....|..+.|. |+. -.|+++-..|.+.|..-.+.. .+.+-
T Consensus 199 Vn~tg~~s~----------~~~kia~i~w~~g~~~~v~pdr-P~lavcy~nGr~QiMR~eND~-----------~Pvv~- 255 (1189)
T KOG2041|consen 199 VNGTGIFSN----------FPTKIAEIEWNTGPYQPVPPDR-PRLAVCYANGRMQIMRSENDP-----------EPVVV- 255 (1189)
T ss_pred EeeeeeecC----------CCccccceeeccCccccCCCCC-CEEEEEEcCceehhhhhcCCC-----------CCeEE-
Confidence 111111111 11124444443 454 378888888888765332211 01110
Q ss_pred cccCccccCCCCccceEEEEEcCCCCEEEEEecCC---------cEEEEECCCCCcceEEeecCCCceeEEeccC
Q 005506 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE---------HVYLMDVNHAGGRAMRYTVGDASKIMSFTPT 332 (693)
Q Consensus 267 ~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg---------~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~ 332 (693)
..+-.|..+.|+|+|..|++++.+. .|.+|.... ...-.+-.++.-+..++|-..
T Consensus 256 ----------dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G-~i~gtlkvpg~~It~lsWEg~ 319 (1189)
T KOG2041|consen 256 ----------DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYG-HIVGTLKVPGSCITGLSWEGT 319 (1189)
T ss_pred ----------ecccEeecceecCCCcEEEEccCcccccCccccceEEEeccch-hheEEEecCCceeeeeEEcCC
Confidence 1112488899999999999998742 444444332 222333333444555555543
No 307
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.37 E-value=3.6e-07 Score=101.40 Aligned_cols=233 Identities=17% Similarity=0.211 Sum_probs=153.4
Q ss_pred CcchhhhhcccccCCCC-CcCcccccchhhhcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEE
Q 005506 8 DGSIYDMLDTRHTDTRP-DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH 86 (693)
Q Consensus 8 ~~~~~~~~~~r~~~~~~-~~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~ 86 (693)
.-|++..+-.|++-+.. .+.....-.....++++..++++.|+...+|++|+-..+.|+.|+-.|.|+++++.+|....
T Consensus 1058 p~N~t~Rl~~rel~~~y~gV~g~~~dr~~IFSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~ 1137 (1516)
T KOG1832|consen 1058 PLNMTGRLGTRELQSFYSGVHGNRRDRQFIFSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE 1137 (1516)
T ss_pred chhhhhcccchhhcCcccccccCcccchhhHhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc
Confidence 34556566666654432 22222222234558889999999999999999999999999999999999999999999888
Q ss_pred EeccCCCcceEEEEEeeCCCCCEEEEEeCCC--cEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEE
Q 005506 87 SIETGHSANVFCTKFVPETSDELVVSGAGDA--EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW 164 (693)
Q Consensus 87 ~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg--~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~ 164 (693)
.. ..|.+.|+-|.=+.+ |.++++.+.-. -..+|++... + .+.+++. .-.++.|+.. ...-+
T Consensus 1138 s~-ncH~SavT~vePs~d--gs~~Ltsss~S~PlsaLW~~~s~-~--------~~~Hsf~----ed~~vkFsn~-~q~r~ 1200 (1516)
T KOG1832|consen 1138 SV-NCHQSAVTLVEPSVD--GSTQLTSSSSSSPLSALWDASST-G--------GPRHSFD----EDKAVKFSNS-LQFRA 1200 (1516)
T ss_pred cc-cccccccccccccCC--cceeeeeccccCchHHHhccccc-c--------Ccccccc----ccceeehhhh-HHHHH
Confidence 88 799999999987776 56666555433 4679999852 1 3344443 3456778763 22233
Q ss_pred EEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEe
Q 005506 165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD 244 (693)
Q Consensus 165 Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD 244 (693)
.|..-..+.+||+.+..++.....+ .......-++..|+|.+ .+++ +||. +||
T Consensus 1201 ~gt~~d~a~~YDvqT~~~l~tylt~---------------------~~~~~y~~n~a~FsP~D-~LIl---ndGv--LWD 1253 (1516)
T KOG1832|consen 1201 LGTEADDALLYDVQTCSPLQTYLTD---------------------TVTSSYSNNLAHFSPCD-TLIL---NDGV--LWD 1253 (1516)
T ss_pred hcccccceEEEecccCcHHHHhcCc---------------------chhhhhhccccccCCCc-ceEe---eCce--eee
Confidence 4445467889999998755221110 00111233678899974 4443 4553 799
Q ss_pred cCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCC
Q 005506 245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (693)
Q Consensus 245 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~ 311 (693)
+|..+.++.|.. | . --..=.|+|+|..++..+. |||+++-
T Consensus 1254 vR~~~aIh~FD~----------f---t---------~~~~G~FHP~g~eVIINSE-----IwD~RTF 1293 (1516)
T KOG1832|consen 1254 VRIPEAIHRFDQ----------F---T---------DYGGGGFHPSGNEVIINSE-----IWDMRTF 1293 (1516)
T ss_pred eccHHHHhhhhh----------h---e---------ecccccccCCCceEEeech-----hhhhHHH
Confidence 997654433311 0 0 0112369999999998874 8999883
No 308
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.36 E-value=0.00047 Score=70.80 Aligned_cols=252 Identities=13% Similarity=0.119 Sum_probs=154.7
Q ss_pred cCCCcEEEEEECCCCCEEEEEeC---CCcEEEEECCC--CcEEE--EeccCCCcceEEEEEeeCCCCCEEEEEeC-CCcE
Q 005506 48 GHQGCVNAISWNSKGSLLISGSD---DTHINVWSYSS--RKLLH--SIETGHSANVFCTKFVPETSDELVVSGAG-DAEV 119 (693)
Q Consensus 48 gH~~~V~~l~~s~~g~~LaSgs~---Dg~I~IWd~~~--~~~~~--~l~~~h~~~I~sv~f~p~~~~~~l~sgs~-Dg~V 119 (693)
.+.+.++-|+|+|+++.|.++-. +|.|..|.++. |++.. .. ..-..+-+.|+++++ +++|+++.. -|.|
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~-~~~g~~p~yvsvd~~--g~~vf~AnY~~g~v 113 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ-TLPGSPPCYVSVDED--GRFVFVANYHSGSV 113 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc-ccCCCCCeEEEECCC--CCEEEEEEccCceE
Confidence 46778999999999998988854 47788777764 43321 11 112233488999998 678877764 6889
Q ss_pred EEEEcCCCCCCCCCCCCCCCceeeccCCCC----------eEEEEEecCCCcEEEEEe-CCCcEEEEeCCCCCCCCCCCC
Q 005506 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRR----------VKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGS 188 (693)
Q Consensus 120 ~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~----------V~~la~sp~~~~~l~Sgs-~Dg~V~lwDlr~~~~~~~~~~ 188 (693)
.++-++.. +.. ........|... +....+.| +++++++.. .--.|.+|++..+...+...
T Consensus 114 ~v~p~~~d-G~l------~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~- 184 (346)
T COG2706 114 SVYPLQAD-GSL------QPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADP- 184 (346)
T ss_pred EEEEcccC-Ccc------ccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEEcccCccccccc-
Confidence 99999763 222 222222235554 88889999 555665554 33468899998655331100
Q ss_pred CCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCC-CCCcccccCCCCCCccccc
Q 005506 189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPPPCVNYF 267 (693)
Q Consensus 189 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~-~~~~~~~~~~~~~~~~~~~ 267 (693)
..+ .....-..|.|+|++.-..++.=.+++|.+|..... ..+.. ++..
T Consensus 185 ---------~~v------------~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~----------lQ~i 233 (346)
T COG2706 185 ---------AEV------------KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEE----------LQTI 233 (346)
T ss_pred ---------ccc------------CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEE----------eeee
Confidence 000 112345789999985434445567999999998864 11111 1111
Q ss_pred ccCccccCCCCccceEEEEEcCCCCEEEEEec-CCcEEEEECCCCCcceEE----eecCCCceeEEeccCCCcccccCCc
Q 005506 268 CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGRAMR----YTVGDASKIMSFTPTLNGLELQPPI 342 (693)
Q Consensus 268 ~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~-Dg~V~lwdl~~~~~~~~~----~~~~~~~~~~~~~p~~~g~~~~~~~ 342 (693)
... ...-....+...|.++|||++|.++.. ...|-+|.+........+ ...+..++.+.++|..+-+-.....
T Consensus 234 ~tl--P~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~ 311 (346)
T COG2706 234 DTL--PEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQK 311 (346)
T ss_pred ccC--ccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccC
Confidence 111 111122235778999999999998876 568999988764332222 2334457888888877666554444
Q ss_pred cc
Q 005506 343 HD 344 (693)
Q Consensus 343 ~~ 344 (693)
++
T Consensus 312 sd 313 (346)
T COG2706 312 SD 313 (346)
T ss_pred CC
Confidence 43
No 309
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.36 E-value=1.9e-06 Score=88.78 Aligned_cols=102 Identities=19% Similarity=0.252 Sum_probs=78.7
Q ss_pred EEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccC
Q 005506 67 SGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH 146 (693)
Q Consensus 67 Sgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h 146 (693)
..++...+.+|....+.+... .||..-++.|+|+|+ +++|+|+..|..|||-...... ..-..+.+|
T Consensus 127 kagD~~~~di~s~~~~~~~~~--lGhvSml~dVavS~D--~~~IitaDRDEkIRvs~ypa~f---------~IesfclGH 193 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRCEPI--LGHVSMLLDVAVSPD--DQFIITADRDEKIRVSRYPATF---------VIESFCLGH 193 (390)
T ss_pred ecCCceeeeeecccccCcchh--hhhhhhhheeeecCC--CCEEEEecCCceEEEEecCccc---------chhhhcccc
Confidence 344555666666655444443 499999999999999 6999999999999987776421 112345689
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCC
Q 005506 147 TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (693)
Q Consensus 147 ~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~ 183 (693)
+..|..++..+ ...|+|+|.|++|++||+++++..
T Consensus 194 ~eFVS~isl~~--~~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 194 KEFVSTISLTD--NYLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred Hhheeeeeecc--CceeeecCCCCcEEEEecccCCcc
Confidence 99999999987 346899999999999999998754
No 310
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.35 E-value=4.4e-05 Score=80.07 Aligned_cols=119 Identities=14% Similarity=0.208 Sum_probs=95.4
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCC-cEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCC
Q 005506 48 GHQGCVNAISWNSKGSLLISGSDDT-HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 126 (693)
Q Consensus 48 gH~~~V~~l~~s~~g~~LaSgs~Dg-~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~ 126 (693)
+|.+.|.-..+..+++-++.|..|| .+-|+|..+++... + .+.-++|++++.+|+ |.+++.+.....+.+.|+.+
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~-e~~lg~I~av~vs~d--GK~~vvaNdr~el~vididn 432 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-I-EKDLGNIEAVKVSPD--GKKVVVANDRFELWVIDIDN 432 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-e-eCCccceEEEEEcCC--CcEEEEEcCceEEEEEEecC
Confidence 6888899999999988999999999 89999998776444 4 366789999999999 78899888888888889987
Q ss_pred CCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCC----cEEEEeCCCCC
Q 005506 127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG----TLRQHDFRQGS 181 (693)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg----~V~lwDlr~~~ 181 (693)
+. +...-+...+-|+.+.|+| ++.+||-+--+| .|+++|+..++
T Consensus 433 gn----------v~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~K 480 (668)
T COG4946 433 GN----------VRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGK 480 (668)
T ss_pred CC----------eeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCe
Confidence 53 2223334557899999999 778888776665 68889988754
No 311
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.35 E-value=6.7e-07 Score=74.76 Aligned_cols=83 Identities=22% Similarity=0.209 Sum_probs=70.7
Q ss_pred cCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhc
Q 005506 376 EGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLC 455 (693)
Q Consensus 376 ~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~KA~~r~a~al~~l~ 455 (693)
.++ |..|+..|.++++..|.. . ....+.+.|.||++. |++..|+.-+.+ ++++|.++..++-.|+|++.||
T Consensus 2 ~~~-y~~Ai~~~~k~~~~~~~~---~-~~~~~~~la~~~~~~---~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~ 72 (84)
T PF12895_consen 2 QGN-YENAIKYYEKLLELDPTN---P-NSAYLYNLAQCYFQQ---GKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLG 72 (84)
T ss_dssp TT--HHHHHHHHHHHHHHHCGT---H-HHHHHHHHHHHHHHT---THHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT
T ss_pred Ccc-HHHHHHHHHHHHHHCCCC---h-hHHHHHHHHHHHHHC---CCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhC
Confidence 466 999999999999988742 1 255677799999995 559999999999 9999999999999999999999
Q ss_pred cHHHHHHHHHHH
Q 005506 456 KYKEALDFAIAA 467 (693)
Q Consensus 456 ~~~eA~~~~~~~ 467 (693)
++++|++.|+++
T Consensus 73 ~y~eAi~~l~~~ 84 (84)
T PF12895_consen 73 KYEEAIKALEKA 84 (84)
T ss_dssp -HHHHHHHHHHH
T ss_pred CHHHHHHHHhcC
Confidence 999999999864
No 312
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=3.1e-06 Score=89.39 Aligned_cols=104 Identities=17% Similarity=0.111 Sum_probs=94.7
Q ss_pred hhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcc
Q 005506 363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR 442 (693)
Q Consensus 363 a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~K 442 (693)
++.+.-.|.-.|-.|+ +..|-+.+.++|++.+.. ..+|--||++|+.+.. ...-..|.++|..|||.++-
T Consensus 326 A~al~~~gtF~fL~g~-~~~a~~d~~~~I~l~~~~------~~lyI~~a~~y~d~~~---~~~~~~~F~~A~~ldp~n~d 395 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGD-SLGAQEDFDAAIKLDPAF------NSLYIKRAAAYADENQ---SEKMWKDFNKAEDLDPENPD 395 (606)
T ss_pred HHHHHHhhhhhhhcCC-chhhhhhHHHHHhcCccc------chHHHHHHHHHhhhhc---cHHHHHHHHHHHhcCCCCCc
Confidence 6677778888899999 999999999999999876 4569999999999654 88899999999999999999
Q ss_pred hhhhHHHHHHHhccHHHHHHHHHHHcccCCCCch
Q 005506 443 AHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (693)
Q Consensus 443 A~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~ 476 (693)
.||-|||.++-|++|++|+.+|++++.++|++.-
T Consensus 396 vYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~ 429 (606)
T KOG0547|consen 396 VYYHRGQMRFLLQQYEEAIADFQKAISLDPENAY 429 (606)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhH
Confidence 9999999999999999999999999999999843
No 313
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=7.2e-05 Score=80.29 Aligned_cols=218 Identities=11% Similarity=0.118 Sum_probs=133.6
Q ss_pred CCCcEEEEEECCCC--CEEEE-----EeCCCcEEEEECCCCcE-----EEEeccCCCcceEEEEEeeCCCCCEEEEEe--
Q 005506 49 HQGCVNAISWNSKG--SLLIS-----GSDDTHINVWSYSSRKL-----LHSIETGHSANVFCTKFVPETSDELVVSGA-- 114 (693)
Q Consensus 49 H~~~V~~l~~s~~g--~~LaS-----gs~Dg~I~IWd~~~~~~-----~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs-- 114 (693)
|...|+.+.++|.+ ..+|+ ++.-..|+||.+..... .+++ ....=..+.|++-+ ..+|+.++
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksF---Fkadkvqm~WN~~g-t~LLvLastd 239 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSF---FKADKVQMKWNKLG-TALLVLASTD 239 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccc---cccceeEEEeccCC-ceEEEEEEEe
Confidence 56789999999863 35553 45667799998862211 1222 12223457788764 23433333
Q ss_pred CC---------CcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEE-EeCCCcEEEEeCCCCCCCC
Q 005506 115 GD---------AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS-ASEDGTLRQHDFRQGSSCP 184 (693)
Q Consensus 115 ~D---------g~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~S-gs~Dg~V~lwDlr~~~~~~ 184 (693)
-| .++++.++... ....-....++|.++.|+|.+..+-++ |-.=.++.+||++.
T Consensus 240 VDktn~SYYGEq~Lyll~t~g~-----------s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~----- 303 (566)
T KOG2315|consen 240 VDKTNASYYGEQTLYLLATQGE-----------SVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG----- 303 (566)
T ss_pred ecCCCccccccceEEEEEecCc-----------eEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-----
Confidence 23 34666666621 122222357899999999954333333 33456788999875
Q ss_pred CCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeC---CCcEEEEecCCCCCCcccccCCCCC
Q 005506 185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS---DAFARLYDRRMLPPLTSCQKRMSPP 261 (693)
Q Consensus 185 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~---Dg~IriwD~r~~~~~~~~~~~~~~~ 261 (693)
.+++++..| +-+++-|+|. +++|+.++- -|.|-+||+.+.+.+.++..
T Consensus 304 ----------~~v~df~eg-------------pRN~~~fnp~-g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a----- 354 (566)
T KOG2315|consen 304 ----------KPVFDFPEG-------------PRNTAFFNPH-GNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA----- 354 (566)
T ss_pred ----------CEeEeCCCC-------------CccceEECCC-CCEEEEeecCCCCCceEEEeccchhhcccccc-----
Confidence 244444443 3467889997 678777664 48999999998665543311
Q ss_pred CcccccccCccccCCCCccceEEEEEcCCCCEEEEEec------CCcEEEEECCCCCcceEEeecCCCceeEEeccCCCc
Q 005506 262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS------GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNG 335 (693)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~------Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~g 335 (693)
..-+.+.|+|||++++|+.. |+.++||+......-...+.. ..-.+.|.|...+
T Consensus 355 ------------------~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~~f~s--EL~qv~W~P~~~~ 414 (566)
T KOG2315|consen 355 ------------------ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKMFKS--ELLQVEWRPFNDK 414 (566)
T ss_pred ------------------CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehhhhhH--hHhheeeeecCCc
Confidence 13577999999999998876 789999998873211111111 2334566665443
No 314
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.34 E-value=2.8e-06 Score=98.64 Aligned_cols=106 Identities=15% Similarity=0.015 Sum_probs=84.8
Q ss_pred hhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCc
Q 005506 362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSF 441 (693)
Q Consensus 362 ~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~ 441 (693)
.+..+...|.-.+..|+ |..|+..|.++|+..|.. ...|.++|.+|+.. |++.+|+..+.+||+++|++.
T Consensus 330 ~a~a~~~lg~~~~~~g~-~~eA~~~~~kal~l~P~~------~~~~~~la~~~~~~---g~~~eA~~~~~~al~~~p~~~ 399 (615)
T TIGR00990 330 EAIALNLRGTFKCLKGK-HLEALADLSKSIELDPRV------TQSYIKRASMNLEL---GDPDKAEEDFDKALKLNSEDP 399 (615)
T ss_pred hHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHC---CCHHHHHHHHHHHHHhCCCCH
Confidence 34445566677777888 888999999988887765 56778888888875 448888888888888888888
Q ss_pred chhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchh
Q 005506 442 RAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 477 (693)
Q Consensus 442 KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~ 477 (693)
.+++.+|.++..+|++++|+++|++++.++|++...
T Consensus 400 ~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~ 435 (615)
T TIGR00990 400 DIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFS 435 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHH
Confidence 888888888888888888888888888888877543
No 315
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.33 E-value=2e-06 Score=86.70 Aligned_cols=165 Identities=15% Similarity=0.197 Sum_probs=113.2
Q ss_pred EECCC--CCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCC
Q 005506 57 SWNSK--GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD 134 (693)
Q Consensus 57 ~~s~~--g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 134 (693)
+|+-+ |.. ++.+.+..|-+-|++++- ...+ ...+.|+++.|... ++++..|+..|.|.+.|++... .
T Consensus 218 awSlni~gyh-fs~G~sqqv~L~nvetg~-~qsf--~sksDVfAlQf~~s--~nLv~~GcRngeI~~iDLR~rn-----q 286 (425)
T KOG2695|consen 218 AWSLNIMGYH-FSVGLSQQVLLTNVETGH-QQSF--QSKSDVFALQFAGS--DNLVFNGCRNGEIFVIDLRCRN-----Q 286 (425)
T ss_pred hhhhccceee-ecccccceeEEEEeeccc-cccc--ccchhHHHHHhccc--CCeeEecccCCcEEEEEeeecc-----c
Confidence 55542 444 455566778888988763 3344 25678999999987 6899999999999999998641 1
Q ss_pred CCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCC
Q 005506 135 NAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ 214 (693)
Q Consensus 135 ~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 214 (693)
.+..+...+ -|.+.|+++.....+..+|++.+.+|+|++||+|.-+.-. .+....+|
T Consensus 287 G~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~----------------------~V~qYeGH 343 (425)
T KOG2695|consen 287 GNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKK----------------------SVMQYEGH 343 (425)
T ss_pred CCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhccc----------------------ceeeeecc
Confidence 112344444 3899999998877566788889999999999999765310 01111111
Q ss_pred cc--ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCccccc
Q 005506 215 TL--SLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK 256 (693)
Q Consensus 215 ~~--~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~ 256 (693)
.. .-.-+.+++.. ..+++++.|.+.|||.++.+..+.+++.
T Consensus 344 vN~~a~l~~~v~~ee-g~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 344 VNLSAYLPAHVKEEE-GSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred ccccccccccccccc-ceEEEccCeeEEEEEecccCceeeccCC
Confidence 11 11123345653 4777799999999999999887766543
No 316
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.32 E-value=0.00042 Score=69.14 Aligned_cols=231 Identities=15% Similarity=0.148 Sum_probs=129.9
Q ss_pred EEECCCCCEEEEEeCCCcEEEEECCCC--cEEE--EeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCC
Q 005506 56 ISWNSKGSLLISGSDDTHINVWSYSSR--KLLH--SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG 131 (693)
Q Consensus 56 l~~s~~g~~LaSgs~Dg~I~IWd~~~~--~~~~--~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~ 131 (693)
++.+.+|++||.-. |..|-|=...+. ..+. .+.....-.=.-++|+|+ +.+||.+...|+|++||+.......
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD--~tlLa~a~S~G~i~vfdl~g~~lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPD--CTLLAYAESTGTIRVFDLMGSELFV 79 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCC--CcEEEEEcCCCeEEEEecccceeEE
Confidence 56678899888774 456666554332 1111 221222234467999999 6899999999999999997421110
Q ss_pred CCCCCCCCceee-ccCCCCeEEEEEecCC-----CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCce
Q 005506 132 LDDNAITPSALY-QCHTRRVKKLAVEVGN-----PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (693)
Q Consensus 132 ~~~~~~~~~~~~-~~h~~~V~~la~sp~~-----~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (693)
+.+...+ ..-...|..+.|.+.. ...|+.-..+|.++=|-+..+.... .. ..
T Consensus 80 -----I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~-----y~------------e~ 137 (282)
T PF15492_consen 80 -----IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQG-----YQ------------EN 137 (282)
T ss_pred -----cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCc-----ce------------ee
Confidence 0111111 1123566777775422 3356667778888777653321100 00 00
Q ss_pred eeecCCCCCccceEEEEEcCCCCcEEEEEeCC-----------CcEEEEecCCCCCCcccccCCCC-------CCccccc
Q 005506 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-----------AFARLYDRRMLPPLTSCQKRMSP-------PPCVNYF 267 (693)
Q Consensus 206 ~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~D-----------g~IriwD~r~~~~~~~~~~~~~~-------~~~~~~~ 267 (693)
..+.........|.++.++|. .++|++|+.. .-+.-|-+-+..|.-........ ..++..+
T Consensus 138 hsfsf~~~yp~Gi~~~vy~p~-h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~ 216 (282)
T PF15492_consen 138 HSFSFSSHYPHGINSAVYHPK-HRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRI 216 (282)
T ss_pred EEEEecccCCCceeEEEEcCC-CCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeec
Confidence 112222233567899999997 4677776542 13556666555443221111100 0111111
Q ss_pred ccCcc-ccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCC
Q 005506 268 CPMHL-SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 268 ~~~~~-~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~ 312 (693)
....+ ...+.....|..|..||||..|++...+|.|.||++.+-.
T Consensus 217 ~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 217 PSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred cceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence 11111 1112233369999999999999999999999999999843
No 317
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.32 E-value=1.2e-06 Score=88.19 Aligned_cols=163 Identities=15% Similarity=0.123 Sum_probs=109.4
Q ss_pred EEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 005506 99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR 178 (693)
Q Consensus 99 v~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr 178 (693)
++|+-+..+.. ++.+.+..|-+-|+.++. ...+. .++.|.++.|+. ..+++..|..+|.|..+|+|
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg~-----------~qsf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR 282 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGH-----------QQSFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLR 282 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeeccc-----------ccccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEee
Confidence 35553322334 455667788888888642 23343 567899999987 56788899999999999999
Q ss_pred CCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCC
Q 005506 179 QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRM 258 (693)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~ 258 (693)
... .+...+...++ |...|+++..-.....+|++.+.+|.|++||+|..+.-.
T Consensus 283 ~rn------qG~~~~a~rly---------------h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~------ 335 (425)
T KOG2695|consen 283 CRN------QGNGWCAQRLY---------------HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKK------ 335 (425)
T ss_pred ecc------cCCCcceEEEE---------------cCcchhhhhhhccccceEeeccCcCceeEeeehhhhccc------
Confidence 863 22334444443 456777877766446789999999999999999864311
Q ss_pred CCCCcccccccCccccCCCCcc-ceEEEEEcCCCCEEEEEecCCcEEEEECCCCCc
Q 005506 259 SPPPCVNYFCPMHLSEHGRSSL-HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGG 313 (693)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~-~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~ 313 (693)
.++.+ .||.+. .-.-+-..+....+++++.|...+||.+.++..
T Consensus 336 ----~V~qY-------eGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghL 380 (425)
T KOG2695|consen 336 ----SVMQY-------EGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHL 380 (425)
T ss_pred ----ceeee-------ecccccccccccccccccceEEEccCeeEEEEEecccCce
Confidence 13333 233221 111233456677888999999999999998653
No 318
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=1.6e-06 Score=91.82 Aligned_cols=181 Identities=16% Similarity=0.222 Sum_probs=119.8
Q ss_pred EEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEE
Q 005506 86 HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS 165 (693)
Q Consensus 86 ~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~S 165 (693)
..+ .||...|..+.-..+ .+-+++++.|.+|++|.++.. +.. .....+..+++.|+.+|.++.|.. +-..+
T Consensus 729 ~nf-~GH~~~iRai~AidN--ENSFiSASkDKTVKLWSik~E-gD~--~~tsaCQfTY~aHkk~i~~igfL~-~lr~i-- 799 (1034)
T KOG4190|consen 729 CNF-TGHQEKIRAIAAIDN--ENSFISASKDKTVKLWSIKPE-GDE--IGTSACQFTYQAHKKPIHDIGFLA-DLRSI-- 799 (1034)
T ss_pred ecc-cCcHHHhHHHHhccc--ccceeeccCCceEEEEEeccc-cCc--cccceeeeEhhhccCcccceeeee-cccee--
Confidence 344 789998888877666 578999999999999999842 111 112246788999999999999987 43444
Q ss_pred EeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEec
Q 005506 166 ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR 245 (693)
Q Consensus 166 gs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~ 245 (693)
++.||.|++||.--++... .+.+..+.+. ...|.|+.- -+.+-+++.++...+|+++|.
T Consensus 800 ~ScD~giHlWDPFigr~La----------q~~dapk~~a----------~~~ikcl~n-v~~~iliAgcsaeSTVKl~Da 858 (1034)
T KOG4190|consen 800 ASCDGGIHLWDPFIGRLLA----------QMEDAPKEGA----------GGNIKCLEN-VDRHILIAGCSAESTVKLFDA 858 (1034)
T ss_pred eeccCcceeecccccchhH----------hhhcCcccCC----------CceeEeccc-Ccchheeeeccchhhheeeec
Confidence 4678999999965544321 1222222221 123344321 122333444478999999999
Q ss_pred CCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCC
Q 005506 246 RMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 246 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~ 312 (693)
|...-...+.. +. ..-++..+.+++..+.|++++++-.+|+|.+.|.+++.
T Consensus 859 Rsce~~~E~kV-----------cn-----a~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~ 909 (1034)
T KOG4190|consen 859 RSCEWTCELKV-----------CN-----APGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGK 909 (1034)
T ss_pred ccccceeeEEe-----------cc-----CCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCc
Confidence 97643222211 10 01122247899999999999999999999999999965
No 319
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.30 E-value=1.1e-06 Score=69.47 Aligned_cols=64 Identities=30% Similarity=0.299 Sum_probs=57.6
Q ss_pred hHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCc
Q 005506 409 IRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS 475 (693)
Q Consensus 409 NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~ 475 (693)
.+|..+++. |++.+|+..+.++++.+|.+..+++.+|.++..+|++++|.+.++++++++|+++
T Consensus 2 ~~a~~~~~~---g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQ---GDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHC---THHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHc---CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 467888885 5599999999999999999999999999999999999999999999999999863
No 320
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.30 E-value=1.7e-05 Score=85.59 Aligned_cols=126 Identities=13% Similarity=0.144 Sum_probs=104.9
Q ss_pred cceeEEe--ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 005506 40 LSQEREL--EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (693)
Q Consensus 40 l~~~~~l--~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg 117 (693)
++....+ .+|-+.|+++.|+.+-..|.|++.|+.|..|+..+.+.++.. ......+.+++.+|+ +.++++++ +
T Consensus 90 g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~-~~~~~~~~sl~is~D--~~~l~~as--~ 164 (541)
T KOG4547|consen 90 GEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIW-KEQKPLVSSLCISPD--GKILLTAS--R 164 (541)
T ss_pred CeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeee-ccCCCccceEEEcCC--CCEEEecc--c
Confidence 3444444 479999999999999999999999999999999998888877 677788999999999 68898886 7
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecC-----CCcEEEEEeCCCcEEEEeCCCC
Q 005506 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-----NPHVVWSASEDGTLRQHDFRQG 180 (693)
Q Consensus 118 ~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~-----~~~~l~Sgs~Dg~V~lwDlr~~ 180 (693)
.|++||+++. +.+..|.+|.++|.+++|.-. +..+|.+...+..+.+|-++..
T Consensus 165 ~ik~~~~~~k----------evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 165 QIKVLDIETK----------EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE 222 (541)
T ss_pred eEEEEEccCc----------eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence 9999999975 678999999999999999764 3445655666777888877653
No 321
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.29 E-value=7.8e-06 Score=89.21 Aligned_cols=238 Identities=12% Similarity=0.154 Sum_probs=155.8
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCc---------------EEEEeccCCCcceEEEEEeeCCCCCEEEEE
Q 005506 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---------------LLHSIETGHSANVFCTKFVPETSDELVVSG 113 (693)
Q Consensus 49 H~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~---------------~~~~l~~~h~~~I~sv~f~p~~~~~~l~sg 113 (693)
.....+|++|+....++|.|+.||.++|..+.+.. .-+++ .||.+.|.-+.|+.. .+.|-|.
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtL-eGH~~sV~vvTWNe~--~QKLTtS 89 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTL-EGHNASVMVVTWNEN--NQKLTTS 89 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhh-ccCcceEEEEEeccc--ccccccc
Confidence 34568999999999999999999999999876531 12334 699999999999988 5899999
Q ss_pred eCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCccc
Q 005506 114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 193 (693)
Q Consensus 114 s~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~ 193 (693)
..+|-|.||-+-.++- -...+.....+.|.+++|+. ++..|...-+||.|.+=.+...+
T Consensus 90 Dt~GlIiVWmlykgsW--------~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsvdGNR------------ 148 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSW--------CEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSVDGNR------------ 148 (1189)
T ss_pred CCCceEEEEeeecccH--------HHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEEeeccce------------
Confidence 9999999999876431 11222334567899999998 67888899999999886665432
Q ss_pred ceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccc
Q 005506 194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 273 (693)
Q Consensus 194 ~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (693)
+|.-. -.......+.|+++ ...++.+-..|.+.+||....= ..++ . ..|...... ...
T Consensus 149 ---IwgKe-----------Lkg~~l~hv~ws~D-~~~~Lf~~ange~hlydnqgnF-~~Kl----~-~~c~Vn~tg-~~s 206 (1189)
T KOG2041|consen 149 ---IWGKE-----------LKGQLLAHVLWSED-LEQALFKKANGETHLYDNQGNF-ERKL----E-KDCEVNGTG-IFS 206 (1189)
T ss_pred ---ecchh-----------cchheccceeeccc-HHHHHhhhcCCcEEEecccccH-HHhh----h-hceEEeeee-eec
Confidence 22111 11223457889997 5677777788999999975210 0000 0 011111000 000
Q ss_pred cCCCCccceEEEEE--------cCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCCCcc
Q 005506 274 EHGRSSLHLTHVTF--------SPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGL 336 (693)
Q Consensus 274 ~~~~~~~~V~~v~f--------spdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~g~ 336 (693)
..+| .|-.+.| -|+...|+++..+|.+.|..-.+.. .++.+..+-.+....|++...-+
T Consensus 207 ~~~~---kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~-~Pvv~dtgm~~vgakWnh~G~vL 273 (1189)
T KOG2041|consen 207 NFPT---KIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDP-EPVVVDTGMKIVGAKWNHNGAVL 273 (1189)
T ss_pred CCCc---cccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCC-CCeEEecccEeecceecCCCcEE
Confidence 0011 1333444 3588899999999999988766643 44444444444455666654433
No 322
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.26 E-value=4.6e-05 Score=84.29 Aligned_cols=240 Identities=18% Similarity=0.202 Sum_probs=154.2
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCC----------CCEEEEEeCCCcE
Q 005506 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS----------DELVVSGAGDAEV 119 (693)
Q Consensus 50 ~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~----------~~~l~sgs~Dg~V 119 (693)
...-+++.|+|.| ++|-|+. ..|.|-|..+-+.+.++ .-|...|+.|+|.|... .-+|+++...|.|
T Consensus 15 ~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsi-e~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI 91 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSI-ELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI 91 (1062)
T ss_pred cccccccccCccc-eEEEecC-ceEEEEehhhhhhhhcc-ccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence 3346789999977 6777765 47899999998999999 68999999999998531 2367888889999
Q ss_pred EEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecC---CCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceE
Q 005506 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG---NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (693)
Q Consensus 120 ~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~---~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~ 196 (693)
.+||+... ..+..++.|.++|..++|-|. ...+|++-....+|.+|+..+++ .
T Consensus 92 il~d~~~~----------s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~--------------k 147 (1062)
T KOG1912|consen 92 ILVDFVLA----------SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGE--------------K 147 (1062)
T ss_pred EEEEehhh----------hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCc--------------e
Confidence 99999865 234556778899999999762 23677777778899999998876 2
Q ss_pred EEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCC----cccccCCCCCCcccccccCcc
Q 005506 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL----TSCQKRMSPPPCVNYFCPMHL 272 (693)
Q Consensus 197 l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~----~~~~~~~~~~~~~~~~~~~~~ 272 (693)
+|.... ......|+.+.|.+...+.+-+..|.|-+-+.--.++- +.++.... +- -+.|+
T Consensus 148 ~Wk~~y-----------s~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd---~S---dl~~l 210 (1062)
T KOG1912|consen 148 FWKYDY-----------SHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSD---HS---DLAHL 210 (1062)
T ss_pred eecccc-----------CCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecC---cc---chhhh
Confidence 333222 23456789999988888888888888887765432211 11110000 00 00000
Q ss_pred cc-----CCCC-----ccce---EEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEeccCC
Q 005506 273 SE-----HGRS-----SLHL---THVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL 333 (693)
Q Consensus 273 ~~-----~~~~-----~~~V---~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~ 333 (693)
.. ..+. ..-| ..++|+|.-+.++-......++++|+.-.....+......-...+.+-|+.
T Consensus 211 ere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~ 284 (1062)
T KOG1912|consen 211 ERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDP 284 (1062)
T ss_pred hhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCC
Confidence 00 0000 0012 236788877766666677789999988743333333222223344455543
No 323
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.26 E-value=5.6e-06 Score=99.27 Aligned_cols=107 Identities=8% Similarity=-0.079 Sum_probs=94.8
Q ss_pred hhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcc
Q 005506 363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR 442 (693)
Q Consensus 363 a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~K 442 (693)
...+...|.-+.+.|+ +.+|+..|.+++...|+. ...+.|.+.++... |++.+|+.-+.+||+++|+++.
T Consensus 609 ~~a~~~LA~~l~~lG~-~deA~~~l~~AL~l~Pd~------~~a~~nLG~aL~~~---G~~eeAi~~l~~AL~l~P~~~~ 678 (987)
T PRK09782 609 ANAYVARATIYRQRHN-VPAAVSDLRAALELEPNN------SNYQAALGYALWDS---GDIAQSREMLERAHKGLPDDPA 678 (987)
T ss_pred HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHC---CCHHHHHHHHHHHHHhCCCCHH
Confidence 3445566777778888 999999999999988887 67889999999985 5599999999999999999999
Q ss_pred hhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHH
Q 005506 443 AHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAE 479 (693)
Q Consensus 443 A~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~ 479 (693)
+++.+|.++..+|++++|...++++++++|++..+..
T Consensus 679 a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~ 715 (987)
T PRK09782 679 LIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITP 715 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhh
Confidence 9999999999999999999999999999999987763
No 324
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.26 E-value=8.4e-06 Score=81.09 Aligned_cols=226 Identities=18% Similarity=0.267 Sum_probs=139.4
Q ss_pred CcEEEEEECCCCC--EEEEEeCCCcEEEEECCCC------------------c------------------------EEE
Q 005506 51 GCVNAISWNSKGS--LLISGSDDTHINVWSYSSR------------------K------------------------LLH 86 (693)
Q Consensus 51 ~~V~~l~~s~~g~--~LaSgs~Dg~I~IWd~~~~------------------~------------------------~~~ 86 (693)
..|+.|.|-.++. .++..+.|.+|++|.+... + +.+
T Consensus 86 EKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~r 165 (460)
T COG5170 86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCR 165 (460)
T ss_pred HHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccce
Confidence 4688999987542 4555568899999986431 0 001
Q ss_pred EeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccC-----CCCeEEEEEecCCCc
Q 005506 87 SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH-----TRRVKKLAVEVGNPH 161 (693)
Q Consensus 87 ~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h-----~~~V~~la~sp~~~~ 161 (693)
.....|..-|.++.|..+. ..+++ +.|-.|.+|++....+.. .+.-++.| +.-|++..|+|...+
T Consensus 166 vyaNaH~yhiNSiS~NsD~--et~lS-aDdLrINLWnl~i~D~sF-------nIVDiKP~nmeeLteVItSaeFhp~~cn 235 (460)
T COG5170 166 VYANAHPYHINSISFNSDK--ETLLS-ADDLRINLWNLEIIDGSF-------NIVDIKPHNMEELTEVITSAEFHPEMCN 235 (460)
T ss_pred eccccceeEeeeeeecCch--heeee-ccceeeeeccccccCCce-------EEEeccCccHHHHHHHHhhcccCHhHcc
Confidence 1114678888999998773 55555 468899999998643321 12223333 346888999998888
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEE
Q 005506 162 VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFAR 241 (693)
Q Consensus 162 ~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~Ir 241 (693)
+|.-.+..|.|++-|+|+...|.... .++...... ........-...|..+.|+|. ++++++-+ --+|+
T Consensus 236 ~fmYSsSkG~Ikl~DlRq~alcdn~~--------klfe~~~D~-v~~~ff~eivsSISD~kFs~n-gryIlsRd-yltvk 304 (460)
T COG5170 236 VFMYSSSKGEIKLNDLRQSALCDNSK--------KLFELTIDG-VDVDFFEEIVSSISDFKFSDN-GRYILSRD-YLTVK 304 (460)
T ss_pred eEEEecCCCcEEehhhhhhhhccCch--------hhhhhccCc-ccchhHHHHhhhhcceEEcCC-CcEEEEec-cceEE
Confidence 88888899999999999876551110 000000000 001111122346788999996 67777654 46899
Q ss_pred EEecCCCCCCcccccCCCCCCcccccccCcccc--------CCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCC
Q 005506 242 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE--------HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 242 iwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~ 310 (693)
|||.++.+ .|+.+. |+|-.. ....-..-..+.||-+.+.+++|+..+..-+|-..+
T Consensus 305 iwDvnm~k------------~pikTi-~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 305 IWDVNMAK------------NPIKTI-PMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred EEeccccc------------CCceee-chHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecccc
Confidence 99999865 222222 111100 000001124588999999999999988777777555
No 325
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.23 E-value=4.3e-06 Score=77.65 Aligned_cols=84 Identities=19% Similarity=0.142 Sum_probs=74.1
Q ss_pred HHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhccHHHHHH
Q 005506 383 GIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALD 462 (693)
Q Consensus 383 Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~KA~~r~a~al~~l~~~~eA~~ 462 (693)
-...|.++|+..|.. +.+++.++.++ |++.+|+..|.+|+.++|.+..+++.+|.++..+|++++|+.
T Consensus 12 ~~~~~~~al~~~p~~---------~~~~g~~~~~~---g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 79 (144)
T PRK15359 12 PEDILKQLLSVDPET---------VYASGYASWQE---GDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAIN 79 (144)
T ss_pred HHHHHHHHHHcCHHH---------HHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 345788999887643 45789999885 459999999999999999999999999999999999999999
Q ss_pred HHHHHcccCCCCchhH
Q 005506 463 FAIAAQCLDPSNSVMA 478 (693)
Q Consensus 463 ~~~~~~~~~p~~~~~~ 478 (693)
+|++++.++|++....
T Consensus 80 ~y~~Al~l~p~~~~a~ 95 (144)
T PRK15359 80 FYGHALMLDASHPEPV 95 (144)
T ss_pred HHHHHHhcCCCCcHHH
Confidence 9999999999987654
No 326
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.23 E-value=6.1e-06 Score=79.21 Aligned_cols=109 Identities=13% Similarity=0.070 Sum_probs=92.7
Q ss_pred CcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCC
Q 005506 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS 438 (693)
Q Consensus 359 ~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p 438 (693)
.+..+..+...|......|+ |.+|+..|.++++..+.. ......+.+.|.+|.+. |++..|+....+|++++|
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~---~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p 103 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGE-YAEALENYEEALKLEEDP---NDRSYILYNMGIIYASN---GEHDKALEYYHQALELNP 103 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHhhcc---chHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCc
Confidence 44556677888888899999 999999999999876543 11246789999999996 559999999999999999
Q ss_pred CCcchhhhHHHHHHHhcc--------------HHHHHHHHHHHcccCCCC
Q 005506 439 SSFRAHLYMSEALEQLCK--------------YKEALDFAIAAQCLDPSN 474 (693)
Q Consensus 439 ~~~KA~~r~a~al~~l~~--------------~~eA~~~~~~~~~~~p~~ 474 (693)
.+..+++.++.++..+++ +++|++++++++.++|++
T Consensus 104 ~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 104 KQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred ccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 999999999999999887 678888888888888876
No 327
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.21 E-value=1.4e-05 Score=72.53 Aligned_cols=109 Identities=15% Similarity=0.006 Sum_probs=93.6
Q ss_pred hhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcc
Q 005506 363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR 442 (693)
Q Consensus 363 a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~K 442 (693)
...+-.+|...++.|+ |..|++.+.......|.. +.........+-+|++. +++.+|+.-..+-|+|+|+|.+
T Consensus 10 ~~~ly~~a~~~l~~~~-Y~~A~~~le~L~~ryP~g---~ya~qAqL~l~yayy~~---~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 10 PQELYQEAQEALQKGN-YEEAIKQLEALDTRYPFG---EYAEQAQLDLAYAYYKQ---GDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHHHHHHHHHhCC-HHHHHHHHHHHHhcCCCC---cccHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCCCC
Confidence 5678889999999999 999999999988888765 33344567789999995 5599999999999999999987
Q ss_pred ---hhhhHHHHHHHhcc---------------HHHHHHHHHHHcccCCCCchhH
Q 005506 443 ---AHLYMSEALEQLCK---------------YKEALDFAIAAQCLDPSNSVMA 478 (693)
Q Consensus 443 ---A~~r~a~al~~l~~---------------~~eA~~~~~~~~~~~p~~~~~~ 478 (693)
|+|++|.+++.+.. ..+|+.+|++++...|+..-+.
T Consensus 83 vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~ 136 (142)
T PF13512_consen 83 VDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAA 136 (142)
T ss_pred ccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 78999999999987 8899999999999999875543
No 328
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=1.7e-05 Score=80.25 Aligned_cols=122 Identities=17% Similarity=0.040 Sum_probs=102.6
Q ss_pred cccCcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhc
Q 005506 356 VATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARR 435 (693)
Q Consensus 356 ~~~~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~ 435 (693)
....+..++.+.-.|.-++..++ +..|...|.+|+++.+++ +..+.--|.+++-..--.+..++-.-..+||+
T Consensus 149 L~~nP~d~egW~~Lg~~ym~~~~-~~~A~~AY~~A~rL~g~n------~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 149 LQQNPGDAEGWDLLGRAYMALGR-ASDALLAYRNALRLAGDN------PEILLGLAEALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred HHhCCCCchhHHHHHHHHHHhcc-hhHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence 45677888999999999999999 999999999999999887 56666666666654433456677888899999
Q ss_pred cCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHHH
Q 005506 436 IDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENI 484 (693)
Q Consensus 436 l~p~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l 484 (693)
+||++++|++.+|.++++-|+|.+|...+++.+.+.|.+..-...+++.
T Consensus 222 ~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ 270 (287)
T COG4235 222 LDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERS 270 (287)
T ss_pred cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 9999999999999999999999999999999999999887655444433
No 329
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.20 E-value=4.3e-06 Score=67.65 Aligned_cols=64 Identities=25% Similarity=0.248 Sum_probs=57.8
Q ss_pred HHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhH
Q 005506 412 ALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA 478 (693)
Q Consensus 412 ~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~ 478 (693)
..|++. +|+.+|+..+.++++++|.++.+++.+|.++..+|++.+|++++++++++.|++..+.
T Consensus 3 ~~~~~~---~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQ---EDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhC---CCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 355663 5699999999999999999999999999999999999999999999999999886643
No 330
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.18 E-value=1.6e-05 Score=80.32 Aligned_cols=116 Identities=14% Similarity=-0.019 Sum_probs=98.9
Q ss_pred CcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCC
Q 005506 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS 438 (693)
Q Consensus 359 ~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p 438 (693)
.......+...|...+..|+ |..|+..|.+++...|.. ......+.+.|.+|++. +++..|+.-+.++++++|
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~-~~~A~~~~~~~~~~~p~~---~~~~~a~~~la~~~~~~---~~~~~A~~~~~~~l~~~p 101 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGD-YTEAIKYFEALESRYPFS---PYAEQAQLDLAYAYYKS---GDYAEAIAAADRFIRLHP 101 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCc---hhHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHCc
Confidence 34566788899999999999 999999999999988765 22234678889999996 459999999999999999
Q ss_pred CCcc---hhhhHHHHHHHh--------ccHHHHHHHHHHHcccCCCCchhHHHH
Q 005506 439 SSFR---AHLYMSEALEQL--------CKYKEALDFAIAAQCLDPSNSVMAEKV 481 (693)
Q Consensus 439 ~~~K---A~~r~a~al~~l--------~~~~eA~~~~~~~~~~~p~~~~~~~~~ 481 (693)
++.. ++|.++.++..+ +++++|++.+++++..+|++......+
T Consensus 102 ~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~ 155 (235)
T TIGR03302 102 NHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK 155 (235)
T ss_pred CCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH
Confidence 9988 799999999987 899999999999999999986554333
No 331
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=8.7e-05 Score=76.65 Aligned_cols=87 Identities=11% Similarity=0.239 Sum_probs=74.6
Q ss_pred cceeEEeccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 005506 40 LSQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 118 (693)
Q Consensus 40 l~~~~~l~gH~~~V~~l~~s~~g~-~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~ 118 (693)
++....+-+|...|..|+|+|..+ +|..++-+.+|+|.|+.+..++..+ ..+ ..+++++|.-+. .++|+.|-..|.
T Consensus 183 fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy-~a~-~~~wSC~wDlde-~h~IYaGl~nG~ 259 (463)
T KOG1645|consen 183 FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSY-IAY-NQIWSCCWDLDE-RHVIYAGLQNGM 259 (463)
T ss_pred cchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehe-ecc-CCceeeeeccCC-cceeEEeccCce
Confidence 333446778999999999999877 7889999999999999998888877 455 789999999886 689999999999
Q ss_pred EEEEEcCCCCC
Q 005506 119 VRLFNLSRFSG 129 (693)
Q Consensus 119 V~vwdl~~~~~ 129 (693)
|.|||++...+
T Consensus 260 VlvyD~R~~~~ 270 (463)
T KOG1645|consen 260 VLVYDMRQPEG 270 (463)
T ss_pred EEEEEccCCCc
Confidence 99999997653
No 332
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.16 E-value=5.7e-06 Score=57.89 Aligned_cols=38 Identities=24% Similarity=0.622 Sum_probs=35.2
Q ss_pred cEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 005506 83 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 123 (693)
Q Consensus 83 ~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwd 123 (693)
+++.++ .+|.+.|++|+|+|+ +.+|++|+.|++|++||
T Consensus 2 ~~~~~~-~~h~~~i~~i~~~~~--~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTF-RGHSSSINSIAWSPD--GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEE-ESSSSSEEEEEEETT--SSEEEEEETTSEEEEEE
T ss_pred eEEEEE-cCCCCcEEEEEEecc--cccceeeCCCCEEEEEC
Confidence 567778 799999999999999 69999999999999997
No 333
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.15 E-value=2.1e-05 Score=75.18 Aligned_cols=109 Identities=13% Similarity=0.011 Sum_probs=88.2
Q ss_pred cchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCC
Q 005506 360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSS 439 (693)
Q Consensus 360 ~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~ 439 (693)
...+..+...|...+..|+ |..|+..|.+++...++. ...+..|.|.|.+|.++++ +..|+..+.+|++++|.
T Consensus 32 ~~~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~l~~~~---~~~~~~~~~lg~~~~~~g~---~~eA~~~~~~Al~~~~~ 104 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGE-YAEALQNYYEAMRLEIDP---YDRSYILYNIGLIHTSNGE---HTKALEYYFQALERNPF 104 (168)
T ss_pred hHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhccccc---hhhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCcC
Confidence 3456667788888999999 999999999999886542 2224589999999999755 99999999999999999
Q ss_pred CcchhhhHHHHHH-------HhccHH-------HHHHHHHHHcccCCCCc
Q 005506 440 SFRAHLYMSEALE-------QLCKYK-------EALDFAIAAQCLDPSNS 475 (693)
Q Consensus 440 ~~KA~~r~a~al~-------~l~~~~-------eA~~~~~~~~~~~p~~~ 475 (693)
+..+++.++.++. .+|+++ +|+..+++++.++|.+.
T Consensus 105 ~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 105 LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 9999999898888 777766 55555566777788653
No 334
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.15 E-value=0.00076 Score=74.14 Aligned_cols=193 Identities=10% Similarity=0.085 Sum_probs=110.5
Q ss_pred cEEEEEECCCCCE-EEEEeCC---CcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCC--cEEEEEcC
Q 005506 52 CVNAISWNSKGSL-LISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA--EVRLFNLS 125 (693)
Q Consensus 52 ~V~~l~~s~~g~~-LaSgs~D---g~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg--~V~vwdl~ 125 (693)
.+..-.|+|+|+. ++..+.+ ..|.++|+.+++..... ...+.+....|+|++ ..++++.+.++ .|.++|+.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt--~~~g~~~~~~~SPDG-~~la~~~~~~g~~~Iy~~dl~ 265 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA--SSQGMLVVSDVSKDG-SKLLLTMAPKGQPDIYLYDTN 265 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe--cCCCcEEeeEECCCC-CEEEEEEccCCCcEEEEEECC
Confidence 7788999999984 6654443 56889999887654433 345556778899994 34445555454 56666765
Q ss_pred CCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEeCCCCCCCCCCCCCCcccceEEEeccCC
Q 005506 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 203 (693)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg--~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (693)
... ...+..+........|+|++..++++....| .|.+.|+.++..
T Consensus 266 ~g~-----------~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~--------------------- 313 (419)
T PRK04043 266 TKT-----------LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV--------------------- 313 (419)
T ss_pred CCc-----------EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe---------------------
Confidence 431 2222223332344579996666666665544 355556654431
Q ss_pred ceeeecCCCCCccceEEEEEcCCCCcEEEEEeCC---------CcEEEEecCCCCCCcccccCCCCCCcccccccCcccc
Q 005506 204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---------AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 274 (693)
Q Consensus 204 ~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~D---------g~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (693)
..+..... . ...|+|+ ++.|+..+.. ..|.+.|+..+... .+..
T Consensus 314 --~rlt~~g~---~--~~~~SPD-G~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~--------------~LT~----- 366 (419)
T PRK04043 314 --EQVVFHGK---N--NSSVSTY-KNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR--------------RLTA----- 366 (419)
T ss_pred --EeCccCCC---c--CceECCC-CCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE--------------ECCC-----
Confidence 11111111 1 1379998 4555544433 36777787654311 0000
Q ss_pred CCCCccceEEEEEcCCCCEEEEEecC-C--cEEEEECCC
Q 005506 275 HGRSSLHLTHVTFSPNGEEVLLSYSG-E--HVYLMDVNH 310 (693)
Q Consensus 275 ~~~~~~~V~~v~fspdg~~L~sgs~D-g--~V~lwdl~~ 310 (693)
.+ ......|+|||+.|+..... + .+.+.++..
T Consensus 367 ~~----~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 367 NG----VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CC----CcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 00 12247899999988766542 2 477777766
No 335
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.14 E-value=1.4e-05 Score=92.33 Aligned_cols=109 Identities=11% Similarity=-0.035 Sum_probs=94.0
Q ss_pred CcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCC
Q 005506 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS 438 (693)
Q Consensus 359 ~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p 438 (693)
.+..++.+...|.-....|. |++|...+..+++..|+. .....|+|.++.+++. +.+|+.-|.++|+.+|
T Consensus 82 ~~~~~~~~~~La~i~~~~g~-~~ea~~~l~~~~~~~Pd~------~~a~~~~a~~L~~~~~---~eeA~~~~~~~l~~~p 151 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHR-SDEGLAVWRGIHQRFPDS------SEAFILMLRGVKRQQG---IEAGRAEIELYFSGGS 151 (694)
T ss_pred ccccHHHHHHHHHHHHHcCC-cHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHhcc---HHHHHHHHHHHhhcCC
Confidence 33445556666777778899 999999999999999887 7788899999999877 9999999999999999
Q ss_pred CCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchh
Q 005506 439 SSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 477 (693)
Q Consensus 439 ~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~ 477 (693)
++.-+++.+|.+|.++|+|+||.+.|++++...|++.++
T Consensus 152 ~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~ 190 (694)
T PRK15179 152 SSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENG 190 (694)
T ss_pred CCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHH
Confidence 999999999999999999999999999999988876544
No 336
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.14 E-value=2e-05 Score=93.69 Aligned_cols=102 Identities=9% Similarity=0.037 Sum_probs=93.6
Q ss_pred HHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhh
Q 005506 366 LVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHL 445 (693)
Q Consensus 366 lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~KA~~ 445 (693)
....+.-....|+ +.+|++.+.+++...|.. ..++.++|.+++++++ +.+|+..+.+|++++|++..+++
T Consensus 362 ~~~~a~~l~~~g~-~~eA~~~l~~al~~~P~n------~~l~~~lA~l~~~~g~---~~~A~~~l~~al~l~Pd~~~l~~ 431 (765)
T PRK10049 362 QSLLSQVAKYSND-LPQAEMRARELAYNAPGN------QGLRIDYASVLQARGW---PRAAENELKKAEVLEPRNINLEV 431 (765)
T ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCChHHHH
Confidence 3456667778899 999999999999999887 6799999999999877 99999999999999999999999
Q ss_pred hHHHHHHHhccHHHHHHHHHHHcccCCCCchh
Q 005506 446 YMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 477 (693)
Q Consensus 446 r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~ 477 (693)
.+|.+++.++++++|...++++++.+|+++.+
T Consensus 432 ~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 432 EQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999999999999999999999999754
No 337
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.13 E-value=5.7e-06 Score=89.37 Aligned_cols=96 Identities=15% Similarity=0.089 Sum_probs=83.8
Q ss_pred HHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHH
Q 005506 370 ARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSE 449 (693)
Q Consensus 370 gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~KA~~r~a~ 449 (693)
|.-+.-.++ |..||++|+.||...|.+ ..++...+|.+-.-.. ..+||..+++||+|.|+++++.|.+|-
T Consensus 437 GVLy~ls~e-fdraiDcf~~AL~v~Pnd------~~lWNRLGAtLAN~~~---s~EAIsAY~rALqLqP~yVR~RyNlgI 506 (579)
T KOG1125|consen 437 GVLYNLSGE-FDRAVDCFEAALQVKPND------YLLWNRLGATLANGNR---SEEAISAYNRALQLQPGYVRVRYNLGI 506 (579)
T ss_pred HHHHhcchH-HHHHHHHHHHHHhcCCch------HHHHHHhhHHhcCCcc---cHHHHHHHHHHHhcCCCeeeeehhhhh
Confidence 333445677 999999999999999988 7788777877766555 889999999999999999999999999
Q ss_pred HHHHhccHHHHHHHHHHHcccCCCCc
Q 005506 450 ALEQLCKYKEALDFAIAAQCLDPSNS 475 (693)
Q Consensus 450 al~~l~~~~eA~~~~~~~~~~~p~~~ 475 (693)
+++.||-|+||.+.|-.|+.+.+...
T Consensus 507 S~mNlG~ykEA~~hlL~AL~mq~ks~ 532 (579)
T KOG1125|consen 507 SCMNLGAYKEAVKHLLEALSMQRKSR 532 (579)
T ss_pred hhhhhhhHHHHHHHHHHHHHhhhccc
Confidence 99999999999999999998887743
No 338
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.12 E-value=7.3e-06 Score=85.96 Aligned_cols=93 Identities=17% Similarity=0.065 Sum_probs=82.3
Q ss_pred hhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhccHHH
Q 005506 380 PYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKE 459 (693)
Q Consensus 380 y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~KA~~r~a~al~~l~~~~e 459 (693)
.+.+|..++++|...+. .++.++..|.+|+.+|.+. |++..|+.++.+||+++|+++.||+.+|.++..+|++++
T Consensus 42 ~e~~i~~~~~~l~~~~~--~~~~~a~~~~~~g~~~~~~---g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 42 QEVILARLNQILASRDL--TDEERAQLHYERGVLYDSL---GLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred HHHHHHHHHHHHccccC--CcHhhHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHH
Confidence 67899999999976542 2344577899999999996 459999999999999999999999999999999999999
Q ss_pred HHHHHHHHcccCCCCchh
Q 005506 460 ALDFAIAAQCLDPSNSVM 477 (693)
Q Consensus 460 A~~~~~~~~~~~p~~~~~ 477 (693)
|+++++++++++|++..+
T Consensus 117 A~~~~~~Al~l~P~~~~a 134 (296)
T PRK11189 117 AYEAFDSVLELDPTYNYA 134 (296)
T ss_pred HHHHHHHHHHhCCCCHHH
Confidence 999999999999998654
No 339
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.11 E-value=0.0024 Score=67.74 Aligned_cols=234 Identities=10% Similarity=0.093 Sum_probs=130.6
Q ss_pred CcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEe----------CCCcEEEEEcCCCCCCCCCCCCCCCce
Q 005506 72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA----------GDAEVRLFNLSRFSGRGLDDNAITPSA 141 (693)
Q Consensus 72 g~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs----------~Dg~V~vwdl~~~~~~~~~~~~~~~~~ 141 (693)
++|.|.|..+++.+..+..+..... + ++|+ ++.|+.+. .+..|.+||..+. +.+.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~--~-~spD--g~~lyva~~~~~R~~~G~~~d~V~v~D~~t~----------~~~~ 91 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP--V-VASD--GSFFAHASTVYSRIARGKRTDYVEVIDPQTH----------LPIA 91 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce--e-ECCC--CCEEEEEeccccccccCCCCCEEEEEECccC----------cEEe
Confidence 7899999999999999866654443 4 8998 45555554 4789999999975 2233
Q ss_pred eecc-------CCCCeEEEEEecCCCcEEEEEe-C-CCcEEEEeCCCCCCCCCCCCCCcccceEEEec--------cCCc
Q 005506 142 LYQC-------HTRRVKKLAVEVGNPHVVWSAS-E-DGTLRQHDFRQGSSCPPAGSSHQECRNILLDL--------RCGA 204 (693)
Q Consensus 142 ~~~~-------h~~~V~~la~sp~~~~~l~Sgs-~-Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~--------~~~~ 204 (693)
.+.- .......++++| ++++++... . +..|.+.|+.+.+....+.. ..|..++... ..+.
T Consensus 92 ~i~~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v--p~~~~vy~t~e~~~~~~~~Dg~ 168 (352)
T TIGR02658 92 DIELPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV--PDCYHIFPTANDTFFMHCRDGS 168 (352)
T ss_pred EEccCCCchhhccCccceEEECC-CCCEEEEecCCCCCEEEEEECCCCcEEEEEeC--CCCcEEEEecCCccEEEeecCc
Confidence 3321 122334788999 445555444 4 78999999998875422221 1122221110 0011
Q ss_pred eeeecCCCCCccceEEE--------------EEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccC
Q 005506 205 KRSLADPPKQTLSLKSC--------------DISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM 270 (693)
Q Consensus 205 ~~~l~~~~~~~~~v~sl--------------~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~ 270 (693)
...+..-.......... .|.+.++.++.+... |.|.+.|+......... .+..+...
T Consensus 169 ~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~--------~~~~~~~~ 239 (352)
T TIGR02658 169 LAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLP--------AIEAFTEA 239 (352)
T ss_pred eEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecc--------eeeecccc
Confidence 11100000000001111 334533566666665 99999997543321100 00000000
Q ss_pred ccccCCCCccceEEEEEcCCCCEEEEEec----------CCcEEEEECCCCCcceEEeecCCCceeEEeccCCC
Q 005506 271 HLSEHGRSSLHLTHVTFSPNGEEVLLSYS----------GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN 334 (693)
Q Consensus 271 ~~~~~~~~~~~V~~v~fspdg~~L~sgs~----------Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~ 334 (693)
. ...+-....+.-++++|+|+.|++... .+.|.++|..+.+ .......+..+..++++|+.+
T Consensus 240 ~-~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k-vi~~i~vG~~~~~iavS~Dgk 311 (352)
T TIGR02658 240 E-KADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK-RLRKIELGHEIDSINVSQDAK 311 (352)
T ss_pred c-cccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe-EEEEEeCCCceeeEEECCCCC
Confidence 0 000001112444999999999988542 2589999999965 444445577888999999877
No 340
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.11 E-value=2.6e-05 Score=79.66 Aligned_cols=113 Identities=8% Similarity=-0.067 Sum_probs=92.3
Q ss_pred hhHHHHHHhh-hhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCC--
Q 005506 364 RMLVEIARNS-LEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS-- 440 (693)
Q Consensus 364 ~~lk~~gn~~-~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~-- 440 (693)
......+... ++.++ |..|+..|.+.|+.+|+. ...+..+.-.|.+|+.. |++.+|+..+.++++..|++
T Consensus 143 ~~~Y~~A~~l~~~~~~-y~~Ai~af~~fl~~yP~s---~~a~~A~y~LG~~y~~~---g~~~~A~~~f~~vv~~yP~s~~ 215 (263)
T PRK10803 143 NTDYNAAIALVQDKSR-QDDAIVAFQNFVKKYPDS---TYQPNANYWLGQLNYNK---GKKDDAAYYFASVVKNYPKSPK 215 (263)
T ss_pred HHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHCcCC---cchHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHCCCCcc
Confidence 4445555555 66788 999999999999999876 33345677889999995 55999999999999988875
Q ss_pred -cchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHH
Q 005506 441 -FRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVEN 483 (693)
Q Consensus 441 -~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~ 483 (693)
..|+|++|.++..+|++++|.+.|+++++.+|+...+....++
T Consensus 216 ~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~r 259 (263)
T PRK10803 216 AADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKR 259 (263)
T ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 5688999999999999999999999999999998665443333
No 341
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.11 E-value=6.3e-06 Score=92.31 Aligned_cols=126 Identities=17% Similarity=0.075 Sum_probs=110.4
Q ss_pred CcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCC
Q 005506 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS 438 (693)
Q Consensus 359 ~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p 438 (693)
....+..++.+||..|..+. |..|...|..++...|.. ....+.+++|+++||+..+- ++|..++.+|.-|+...|
T Consensus 49 ~l~ra~~~~~E~n~~~~K~d-~~~~~~~~~~~~~llp~~--~~~~a~~~~~~~s~~m~~~l-~~~~~~~~E~~la~~~~p 124 (748)
T KOG4151|consen 49 FLSRALELKEEGNKLFQKRD-YEGAMFRYDCAIKLLPKD--HHVVATLRSNQASCYMQLGL-GEYPKAIPECELALESQP 124 (748)
T ss_pred HHHHHHHHHhhhhHHhhhhh-hhccchhhhhhheecccc--chhhhhHHHHHHHHHhhcCc-cchhhhcCchhhhhhccc
Confidence 34456788999999999999 999999999999988743 33447799999999999875 889999999999999999
Q ss_pred CCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHHHHHHH
Q 005506 439 SSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHI 488 (693)
Q Consensus 439 ~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l~~~i 488 (693)
...||+++|+.+|..+++++-|++++.-....+|.+..+...+.+++.-+
T Consensus 125 ~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll 174 (748)
T KOG4151|consen 125 RISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL 174 (748)
T ss_pred hHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999977777666666655
No 342
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.10 E-value=0.00013 Score=80.93 Aligned_cols=233 Identities=13% Similarity=0.126 Sum_probs=148.7
Q ss_pred hcccceeEEeccCCCcEEEEEECCC------C------CEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeC
Q 005506 37 VRRLSQERELEGHQGCVNAISWNSK------G------SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 104 (693)
Q Consensus 37 i~~l~~~~~l~gH~~~V~~l~~s~~------g------~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~ 104 (693)
...++.++.++-|...|+.+.|.|- + -+||++.-.|+|.|||...+..+..+ ..|..+|..++|.|.
T Consensus 42 s~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l-~~~~~~~qdl~W~~~ 120 (1062)
T KOG1912|consen 42 SRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWL-SHSNDSVQDLCWVPA 120 (1062)
T ss_pred hhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhh-cCCCcchhheeeeec
Confidence 3567778889999999999999872 1 26788888999999999988888888 688899999999987
Q ss_pred CCC--CEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCC
Q 005506 105 TSD--ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 182 (693)
Q Consensus 105 ~~~--~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~ 182 (693)
.+. .+|++-....+|-+|+..++ .....+........++.+.|-++..|..-+..|.|.+-+.-....
T Consensus 121 rd~Srd~LlaIh~ss~lvLwntdtG----------~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~se 190 (1062)
T KOG1912|consen 121 RDDSRDVLLAIHGSSTLVLWNTDTG----------EKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSE 190 (1062)
T ss_pred cCcchheeEEecCCcEEEEEEccCC----------ceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCC
Confidence 533 36666677789999999875 345555544556677999998877777777778887776543322
Q ss_pred CCCCCCCCcccceEEEeccCC--c----------eeeecCCCCC-cc--ceEEEEEcCCCCcEEEEEeCCCcEEEEecCC
Q 005506 183 CPPAGSSHQECRNILLDLRCG--A----------KRSLADPPKQ-TL--SLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (693)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~~--~----------~~~l~~~~~~-~~--~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~ 247 (693)
.. .....+.+.+. . .......+.. .. ..-.++|+|...+.+.. ..-.-+.++|+.-
T Consensus 191 p~--------~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi-~~prellv~dle~ 261 (1062)
T KOG1912|consen 191 PD--------VPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFI-TFPRELLVFDLEY 261 (1062)
T ss_pred CC--------CCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEE-EeccceEEEcchh
Confidence 10 00111111110 0 0000000000 00 12246778874444444 3456788999875
Q ss_pred CCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCC--CEEEEEecCCcEEEEECCC
Q 005506 248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG--EEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg--~~L~sgs~Dg~V~lwdl~~ 310 (693)
...+.... .. .. .+.-+.+-|++ ..|++...||.+.+|--+.
T Consensus 262 ~~~l~vvp--------------ie-----r~--~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 262 ECCLAVVP--------------IE-----RG--GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred hceeEEEE--------------ec-----cC--CcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 43322111 00 01 13345565654 5788899999999997665
No 343
>PRK12370 invasion protein regulator; Provisional
Probab=98.10 E-value=7.3e-06 Score=93.68 Aligned_cols=92 Identities=14% Similarity=0.036 Sum_probs=83.6
Q ss_pred cCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhc
Q 005506 376 EGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLC 455 (693)
Q Consensus 376 ~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~KA~~r~a~al~~l~ 455 (693)
.++ +..|+..+.+|++..|.. +..|.++|.+++.. |++.+|+..+.+||+++|+++.+|+.+|.++..+|
T Consensus 317 ~~~-~~~A~~~~~~Al~ldP~~------~~a~~~lg~~~~~~---g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G 386 (553)
T PRK12370 317 QNA-MIKAKEHAIKATELDHNN------PQALGLLGLINTIH---SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAG 386 (553)
T ss_pred chH-HHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 345 889999999999999887 67888899998885 55999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHcccCCCCchh
Q 005506 456 KYKEALDFAIAAQCLDPSNSVM 477 (693)
Q Consensus 456 ~~~eA~~~~~~~~~~~p~~~~~ 477 (693)
++++|++.++++++++|.+...
T Consensus 387 ~~~eAi~~~~~Al~l~P~~~~~ 408 (553)
T PRK12370 387 QLEEALQTINECLKLDPTRAAA 408 (553)
T ss_pred CHHHHHHHHHHHHhcCCCChhh
Confidence 9999999999999999997543
No 344
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=0.00016 Score=80.67 Aligned_cols=166 Identities=13% Similarity=0.153 Sum_probs=111.1
Q ss_pred EeccCCCcEEEEEECCC-------------CCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeC---CCCC
Q 005506 45 ELEGHQGCVNAISWNSK-------------GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE---TSDE 108 (693)
Q Consensus 45 ~l~gH~~~V~~l~~s~~-------------g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~---~~~~ 108 (693)
-|..|.|.|.-..+.-+ |.+++|||.||+|.|-.+.+.+..+++ ....++.+|+++|+ ....
T Consensus 53 ~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~--df~rpiksial~Pd~~~~~sk 130 (846)
T KOG2066|consen 53 ALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQY--DFKRPIKSIALHPDFSRQQSK 130 (846)
T ss_pred eeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeE--ecCCcceeEEeccchhhhhhh
Confidence 35567777776666555 999999999999999999988877766 45678999999997 1236
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCC
Q 005506 109 LVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS 188 (693)
Q Consensus 109 ~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~ 188 (693)
.+++|+.-| +.++.-+-...+ ..+ ....-.++|.++.|. +++||=++.+ -|++||+.+.+....+..
T Consensus 131 ~fv~GG~ag-lvL~er~wlgnk-------~~v-~l~~~eG~I~~i~W~---g~lIAWand~-Gv~vyd~~~~~~l~~i~~ 197 (846)
T KOG2066|consen 131 QFVSGGMAG-LVLSERNWLGNK-------DSV-VLSEGEGPIHSIKWR---GNLIAWANDD-GVKVYDTPTRQRLTNIPP 197 (846)
T ss_pred heeecCcce-EEEehhhhhcCc-------cce-eeecCccceEEEEec---CcEEEEecCC-CcEEEeccccceeeccCC
Confidence 899999888 766654322111 112 345567899999995 4677655554 578999988764422211
Q ss_pred CCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCC
Q 005506 189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (693)
Q Consensus 189 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~ 247 (693)
.+. .+........+.|.+. ..|+.|-. .+|+|..++.
T Consensus 198 p~~-------------------~~R~e~fpphl~W~~~--~~LVIGW~-d~v~i~~I~~ 234 (846)
T KOG2066|consen 198 PSQ-------------------SVRPELFPPHLHWQDE--DRLVIGWG-DSVKICSIKK 234 (846)
T ss_pred CCC-------------------CCCcccCCCceEecCC--CeEEEecC-CeEEEEEEec
Confidence 110 0011122345778875 46777755 4788888883
No 345
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.03 E-value=0.00086 Score=70.71 Aligned_cols=190 Identities=13% Similarity=0.113 Sum_probs=127.8
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCcEEEEeccC------CC-----cceEEEE-EeeCCCCCEEEEEeCCCcEEEEEcCC
Q 005506 59 NSKGSLLISGSDDTHINVWSYSSRKLLHSIETG------HS-----ANVFCTK-FVPETSDELVVSGAGDAEVRLFNLSR 126 (693)
Q Consensus 59 s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~------h~-----~~I~sv~-f~p~~~~~~l~sgs~Dg~V~vwdl~~ 126 (693)
+.||+.++-. .-|.|.+||+.+.+.. .+..+ .. .+..-+. |++.+ |++++..+. |...|.+...
T Consensus 275 nsDGkrIvFq-~~GdIylydP~td~le-kldI~lpl~rk~k~~k~~~pskyledfa~~~-Gd~ia~VSR-GkaFi~~~~~ 350 (668)
T COG4946 275 NSDGKRIVFQ-NAGDIYLYDPETDSLE-KLDIGLPLDRKKKQPKFVNPSKYLEDFAVVN-GDYIALVSR-GKAFIMRPWD 350 (668)
T ss_pred CCCCcEEEEe-cCCcEEEeCCCcCcce-eeecCCccccccccccccCHHHhhhhhccCC-CcEEEEEec-CcEEEECCCC
Confidence 3467766543 4467999998865432 22111 01 1111222 55554 789988886 7788877764
Q ss_pred CCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCC-cEEEEeCCCCCCCCCCCCCCcccceEEEeccCCce
Q 005506 127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (693)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg-~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (693)
. ...-.+|...|.-..+.- .++-++.|..|| .|-++|.++++..
T Consensus 351 ~------------~~iqv~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e~k---------------------- 395 (668)
T COG4946 351 G------------YSIQVGKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGEVK---------------------- 395 (668)
T ss_pred C------------eeEEcCCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCceEE----------------------
Confidence 2 223335778888877766 455788899999 8999999886511
Q ss_pred eeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEE
Q 005506 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV 285 (693)
Q Consensus 206 ~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v 285 (693)
.....-..|.++..+|+ ++.++++.....+.++|+.++.+.. + ......-|+.+
T Consensus 396 ----r~e~~lg~I~av~vs~d-GK~~vvaNdr~el~vididngnv~~--------------i-------dkS~~~lItdf 449 (668)
T COG4946 396 ----RIEKDLGNIEAVKVSPD-GKKVVVANDRFELWVIDIDNGNVRL--------------I-------DKSEYGLITDF 449 (668)
T ss_pred ----EeeCCccceEEEEEcCC-CcEEEEEcCceEEEEEEecCCCeeE--------------e-------cccccceeEEE
Confidence 11122356889999997 7899999999999999999875321 1 11112249999
Q ss_pred EEcCCCCEEEEEecCC----cEEEEECCCCCc
Q 005506 286 TFSPNGEEVLLSYSGE----HVYLMDVNHAGG 313 (693)
Q Consensus 286 ~fspdg~~L~sgs~Dg----~V~lwdl~~~~~ 313 (693)
+|||++++++-+--+| .|++||+.+++.
T Consensus 450 ~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 450 DWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred EEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence 9999999999887665 799999999653
No 346
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.02 E-value=0.0003 Score=77.67 Aligned_cols=165 Identities=15% Similarity=0.107 Sum_probs=93.1
Q ss_pred CCCcEEEEEECCCCCEEEEEeC-----CCcEEEEECCCC--cEEEEeccCCCcceEEEEEeeCCCCCEEEEEe-CCCcEE
Q 005506 49 HQGCVNAISWNSKGSLLISGSD-----DTHINVWSYSSR--KLLHSIETGHSANVFCTKFVPETSDELVVSGA-GDAEVR 120 (693)
Q Consensus 49 H~~~V~~l~~s~~g~~LaSgs~-----Dg~I~IWd~~~~--~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs-~Dg~V~ 120 (693)
..+......|+|||+.||..+. |-.+.+|++..+ .....+..++.+.....+|+|+ |+.|+..+ .++...
T Consensus 229 ~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPD--G~~Laf~s~~~g~~~ 306 (428)
T PRK01029 229 LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPD--GTRLVFVSNKDGRPR 306 (428)
T ss_pred CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCC--CCEEEEEECCCCCce
Confidence 3445557899999998886653 223455777653 1223332233344567899999 57666554 567666
Q ss_pred EEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEeCCCCCCCCCCCCCCcccceEEE
Q 005506 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILL 198 (693)
Q Consensus 121 vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg--~V~lwDlr~~~~~~~~~~~~~~~~~~l~ 198 (693)
+|.+...... .....+..+...+....|+|++..+++++..+| .|.+||+.+++..
T Consensus 307 ly~~~~~~~g-------~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~--------------- 364 (428)
T PRK01029 307 IYIMQIDPEG-------QSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY--------------- 364 (428)
T ss_pred EEEEECcccc-------cceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE---------------
Confidence 6655421100 112333334456778899995544444444333 5888888765411
Q ss_pred eccCCceeeecCCCCCccceEEEEEcCCCCcEEEE-EeC--CCcEEEEecCCCC
Q 005506 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV-GGS--DAFARLYDRRMLP 249 (693)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Lat-gs~--Dg~IriwD~r~~~ 249 (693)
.+... ...+....|+|+ ++.|+. +.. ...|++||+...+
T Consensus 365 --------~Lt~~---~~~~~~p~wSpD-G~~L~f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 365 --------QLTTS---PENKESPSWAID-SLHLVYSAGNSNESELYLISLITKK 406 (428)
T ss_pred --------EccCC---CCCccceEECCC-CCEEEEEECCCCCceEEEEECCCCC
Confidence 11111 123456889998 555554 333 3568888887543
No 347
>PRK12370 invasion protein regulator; Provisional
Probab=98.00 E-value=4e-05 Score=87.64 Aligned_cols=108 Identities=7% Similarity=-0.063 Sum_probs=91.9
Q ss_pred CcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCC
Q 005506 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS 438 (693)
Q Consensus 359 ~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p 438 (693)
.+.....+...|.-....|+ |.+|+..|.+|++..|+. +..|.+.|.+|+.. |++.+|+..+.+|++++|
T Consensus 334 dP~~~~a~~~lg~~~~~~g~-~~~A~~~~~~Al~l~P~~------~~a~~~lg~~l~~~---G~~~eAi~~~~~Al~l~P 403 (553)
T PRK12370 334 DHNNPQALGLLGLINTIHSE-YIVGSLLFKQANLLSPIS------ADIKYYYGWNLFMA---GQLEEALQTINECLKLDP 403 (553)
T ss_pred CCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHC---CCHHHHHHHHHHHHhcCC
Confidence 34444555566777778899 999999999999999987 77889999999985 559999999999999999
Q ss_pred CCcchhhhHHHHHHHhccHHHHHHHHHHHcccC-CCCch
Q 005506 439 SSFRAHLYMSEALEQLCKYKEALDFAIAAQCLD-PSNSV 476 (693)
Q Consensus 439 ~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~-p~~~~ 476 (693)
.+..+++.++.+++.+|++++|++.++++++.. |++..
T Consensus 404 ~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~ 442 (553)
T PRK12370 404 TRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPI 442 (553)
T ss_pred CChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHH
Confidence 999888888888999999999999999998775 65554
No 348
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.98 E-value=0.00095 Score=68.60 Aligned_cols=202 Identities=15% Similarity=0.143 Sum_probs=121.4
Q ss_pred CCcEEEEECCCCc--EEEEeccCCCcceEEEEEeeCCCCCEEEEEeCC---CcEEEEEcCCCCCCCCCCCCCCCceeecc
Q 005506 71 DTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQC 145 (693)
Q Consensus 71 Dg~I~IWd~~~~~--~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~D---g~V~vwdl~~~~~~~~~~~~~~~~~~~~~ 145 (693)
++-|.+|++.+.. .-......+.++++-|+|+|+ .+.|.++..+ |.|-.|.+...+++. ..+.....
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~--~~~LY~v~~~~~~ggvaay~iD~~~G~L------t~ln~~~~ 86 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPD--QRHLYVVNEPGEEGGVAAYRIDPDDGRL------TFLNRQTL 86 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCC--CCEEEEEEecCCcCcEEEEEEcCCCCeE------EEeecccc
Confidence 4669999987432 211111367788999999999 4788887654 778888887544432 11111111
Q ss_pred CCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcC
Q 005506 146 HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS 225 (693)
Q Consensus 146 h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp 225 (693)
-..+...+++++++..+|.+--.-|.|.++-++..-.+. .....+.....+. .......-+.+..+.|
T Consensus 87 ~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~-------~~v~~~~h~g~~p-----~~rQ~~~h~H~a~~tP 154 (346)
T COG2706 87 PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQ-------PVVQVVKHTGSGP-----HERQESPHVHSANFTP 154 (346)
T ss_pred CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccc-------cceeeeecCCCCC-----CccccCCccceeeeCC
Confidence 223347899999554444444456899999987642210 0011111111110 0111122367889999
Q ss_pred CCCcEEEEEeC-CCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEec-CCcE
Q 005506 226 TRPHLLLVGGS-DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHV 303 (693)
Q Consensus 226 ~~~~~Latgs~-Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~-Dg~V 303 (693)
+ +++|++.+. --.|.+|++..++....- +..+ ..+..-..|.|+|++++..+... +++|
T Consensus 155 ~-~~~l~v~DLG~Dri~~y~~~dg~L~~~~--------------~~~v----~~G~GPRHi~FHpn~k~aY~v~EL~stV 215 (346)
T COG2706 155 D-GRYLVVPDLGTDRIFLYDLDDGKLTPAD--------------PAEV----KPGAGPRHIVFHPNGKYAYLVNELNSTV 215 (346)
T ss_pred C-CCEEEEeecCCceEEEEEcccCcccccc--------------cccc----CCCCCcceEEEcCCCcEEEEEeccCCEE
Confidence 8 567766653 457999999865432111 1111 11223578999999999988887 9999
Q ss_pred EEEECCCC
Q 005506 304 YLMDVNHA 311 (693)
Q Consensus 304 ~lwdl~~~ 311 (693)
-+|..+..
T Consensus 216 ~v~~y~~~ 223 (346)
T COG2706 216 DVLEYNPA 223 (346)
T ss_pred EEEEEcCC
Confidence 99999883
No 349
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=0.00036 Score=74.82 Aligned_cols=74 Identities=14% Similarity=0.274 Sum_probs=53.0
Q ss_pred CCCcEEEEEECCCCCEEEEEeC-----------CCcEEEEECCCCcEEEEeccC-CCcceE-EEEEeeCCCCCEEEEEeC
Q 005506 49 HQGCVNAISWNSKGSLLISGSD-----------DTHINVWSYSSRKLLHSIETG-HSANVF-CTKFVPETSDELVVSGAG 115 (693)
Q Consensus 49 H~~~V~~l~~s~~g~~LaSgs~-----------Dg~I~IWd~~~~~~~~~l~~~-h~~~I~-sv~f~p~~~~~~l~sgs~ 115 (693)
|. .|.-+.|||+.++|+|=|. -..++|||+.+|...+.+... ....++ -++|+.+ +.++|--..
T Consensus 249 Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~D--dKy~Arm~~ 325 (698)
T KOG2314|consen 249 HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHD--DKYFARMTG 325 (698)
T ss_pred CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccC--CceeEEecc
Confidence 44 4889999999999999763 156899999999888877321 122222 3578887 677776555
Q ss_pred CCcEEEEEcCC
Q 005506 116 DAEVRLFNLSR 126 (693)
Q Consensus 116 Dg~V~vwdl~~ 126 (693)
.+|.||+...
T Consensus 326 -~sisIyEtps 335 (698)
T KOG2314|consen 326 -NSISIYETPS 335 (698)
T ss_pred -ceEEEEecCc
Confidence 6788888763
No 350
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.98 E-value=8.3e-06 Score=64.92 Aligned_cols=59 Identities=20% Similarity=0.180 Sum_probs=53.9
Q ss_pred cCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhH
Q 005506 420 KNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA 478 (693)
Q Consensus 420 ~~d~~~Al~Dc~~Al~l~p~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~ 478 (693)
.|++..|+.-+.++++.+|++..+++.+|+|++.+|++++|.+.+++++..+|++..+.
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 36799999999999999999999999999999999999999999999999999875543
No 351
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.97 E-value=0.0004 Score=83.23 Aligned_cols=218 Identities=17% Similarity=0.197 Sum_probs=134.0
Q ss_pred CCCcEEEEEECCCCCEEEEEeC---C---CcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeC---CCcE
Q 005506 49 HQGCVNAISWNSKGSLLISGSD---D---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEV 119 (693)
Q Consensus 49 H~~~V~~l~~s~~g~~LaSgs~---D---g~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~---Dg~V 119 (693)
+.+.-..|+|-.||.++|+.+- . +.|+||+-+ |....+- ..-.+--.+++|.|. |++||+.-. ...|
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stS-E~v~gLe~~l~WrPs--G~lIA~~q~~~~~~~V 283 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTS-EPVDGLEGALSWRPS--GNLIASSQRLPDRHDV 283 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecc-ccCCCccCCccCCCC--CCEEEEEEEcCCCcEE
Confidence 5556678999999999998874 2 579999975 6544443 233444457899999 789988765 2345
Q ss_pred EEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEe
Q 005506 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (693)
Q Consensus 120 ~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~ 199 (693)
.+|.-+... .. +....+......|..|+|++ ++.+|+..-.|. |.+|-..+-+ |.
T Consensus 284 vFfErNGLr-hg------eF~l~~~~~~~~v~~l~Wn~-ds~iLAv~~~~~-vqLWt~~NYH----------------WY 338 (928)
T PF04762_consen 284 VFFERNGLR-HG------EFTLRFDPEEEKVIELAWNS-DSEILAVWLEDR-VQLWTRSNYH----------------WY 338 (928)
T ss_pred EEEecCCcE-ee------eEecCCCCCCceeeEEEECC-CCCEEEEEecCC-ceEEEeeCCE----------------EE
Confidence 555433211 00 11111223456899999999 778888877655 9999876543 21
Q ss_pred ccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecC----CCCC------------------CcccccC
Q 005506 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR----MLPP------------------LTSCQKR 257 (693)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r----~~~~------------------~~~~~~~ 257 (693)
++. .+... ....+..+.|+|.++..|.+.+.+|.+..++.. .... +..+...
T Consensus 339 LKq----ei~~~--~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a 412 (928)
T PF04762_consen 339 LKQ----EIRFS--SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRA 412 (928)
T ss_pred EEE----EEEcc--CCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEeccccc
Confidence 110 11111 111233488999888888888887777665542 1110 1111111
Q ss_pred -CCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCC
Q 005506 258 -MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 258 -~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~ 310 (693)
.+||.|...+ .-..+|..++|++++..+++-..||.|.+|....
T Consensus 413 ~VPPPMs~~~l---------~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 413 VVPPPMSSYEL---------ELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred CCCchHhceEE---------cCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence 1222222221 1123699999999998899999999999998544
No 352
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.97 E-value=8.5e-05 Score=73.28 Aligned_cols=127 Identities=13% Similarity=0.093 Sum_probs=97.9
Q ss_pred hhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCc
Q 005506 362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSF 441 (693)
Q Consensus 362 ~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~ 441 (693)
....+-..|...+..|+ |..|+..|++.+...|.. +.........|.+|++. +|+..|+..+.+-++..|++.
T Consensus 4 ~~~~lY~~a~~~~~~g~-y~~Ai~~f~~l~~~~P~s---~~a~~A~l~la~a~y~~---~~y~~A~~~~~~fi~~yP~~~ 76 (203)
T PF13525_consen 4 TAEALYQKALEALQQGD-YEEAIKLFEKLIDRYPNS---PYAPQAQLMLAYAYYKQ---GDYEEAIAAYERFIKLYPNSP 76 (203)
T ss_dssp -HHHHHHHHHHHHHCT--HHHHHHHHHHHHHH-TTS---TTHHHHHHHHHHHHHHT---T-HHHHHHHHHHHHHH-TT-T
T ss_pred CHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCCCC---hHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHCCCCc
Confidence 35678889999999999 999999999999998765 34455667889999995 569999999999999999987
Q ss_pred c---hhhhHHHHHHHhcc-----------HHHHHHHHHHHcccCCCCchh---HHHHHHHHHHHHHHHHhh
Q 005506 442 R---AHLYMSEALEQLCK-----------YKEALDFAIAAQCLDPSNSVM---AEKVENIKKHIAAAETEK 495 (693)
Q Consensus 442 K---A~~r~a~al~~l~~-----------~~eA~~~~~~~~~~~p~~~~~---~~~~~~l~~~i~~~~~~~ 495 (693)
+ |+|.+|.+++.+.+ ..+|+..++.++...|+..-+ .+.+..|++.+.+.+...
T Consensus 77 ~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~i 147 (203)
T PF13525_consen 77 KADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYI 147 (203)
T ss_dssp THHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 89999999877643 458999999999999997543 445667777776666543
No 353
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.96 E-value=9e-05 Score=75.11 Aligned_cols=128 Identities=12% Similarity=-0.012 Sum_probs=101.5
Q ss_pred hhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCc
Q 005506 362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSF 441 (693)
Q Consensus 362 ~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~ 441 (693)
....+-..|...++.|+ |..|++.|.+++..+|.. +.......+.|.+|++. +|+..|+....+.++++|++.
T Consensus 31 ~~~~~Y~~A~~~~~~g~-y~~Ai~~f~~l~~~yP~s---~~a~~a~l~la~ayy~~---~~y~~A~~~~e~fi~~~P~~~ 103 (243)
T PRK10866 31 PPSEIYATAQQKLQDGN-WKQAITQLEALDNRYPFG---PYSQQVQLDLIYAYYKN---ADLPLAQAAIDRFIRLNPTHP 103 (243)
T ss_pred CHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHhCcCCC
Confidence 45667788999999999 999999999999998865 33333467889999995 559999999999999999986
Q ss_pred c---hhhhHHHHHHHhcc------------------HHHHHHHHHHHcccCCCCc---hhHHHHHHHHHHHHHHHHhhc
Q 005506 442 R---AHLYMSEALEQLCK------------------YKEALDFAIAAQCLDPSNS---VMAEKVENIKKHIAAAETEKN 496 (693)
Q Consensus 442 K---A~~r~a~al~~l~~------------------~~eA~~~~~~~~~~~p~~~---~~~~~~~~l~~~i~~~~~~~~ 496 (693)
+ |+|.+|.++..+++ ..+|+..+++++...|+.. ++...+..++.++.+.+....
T Consensus 104 ~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia 182 (243)
T PRK10866 104 NIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVA 182 (243)
T ss_pred chHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 78999999766651 3578899999999999864 334456677777777665443
No 354
>PLN02789 farnesyltranstransferase
Probab=97.96 E-value=3.2e-05 Score=81.41 Aligned_cols=90 Identities=14% Similarity=0.073 Sum_probs=53.7
Q ss_pred hhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhccHHH
Q 005506 380 PYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKE 459 (693)
Q Consensus 380 y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~KA~~r~a~al~~l~~~~e 459 (693)
+.+|+..+.++|+..|++ ...+.+|+.++.+++. ..+.+++.-|.+||++||.+..|+..|+-++..++++++
T Consensus 88 l~eeL~~~~~~i~~npkn------yqaW~~R~~~l~~l~~-~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~e 160 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKN------YQIWHHRRWLAEKLGP-DAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWED 160 (320)
T ss_pred HHHHHHHHHHHHHHCCcc------hHHhHHHHHHHHHcCc-hhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHH
Confidence 556666666666655554 4456666655555432 112345555666666666666666666666666666666
Q ss_pred HHHHHHHHcccCCCCch
Q 005506 460 ALDFAIAAQCLDPSNSV 476 (693)
Q Consensus 460 A~~~~~~~~~~~p~~~~ 476 (693)
|++++.++++.+|.|..
T Consensus 161 eL~~~~~~I~~d~~N~s 177 (320)
T PLN02789 161 ELEYCHQLLEEDVRNNS 177 (320)
T ss_pred HHHHHHHHHHHCCCchh
Confidence 66666666666666644
No 355
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.94 E-value=0.00011 Score=72.70 Aligned_cols=104 Identities=18% Similarity=0.084 Sum_probs=80.1
Q ss_pred hHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchh
Q 005506 365 MLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAH 444 (693)
Q Consensus 365 ~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~KA~ 444 (693)
.+...|.-.+..|+ |..|+..|.+++..... ......+.+.+.+|++. |++..|+..+.++++++|.+..++
T Consensus 101 ~~~~~~~~~~~~g~-~~~A~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~ 172 (234)
T TIGR02521 101 VLNNYGTFLCQQGK-YEQAMQQFEQAIEDPLY----PQPARSLENAGLCALKA---GDFDKAEKYLTRALQIDPQRPESL 172 (234)
T ss_pred HHHHHHHHHHHccc-HHHHHHHHHHHHhcccc----ccchHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCcCChHHH
Confidence 34445566667777 77888888877764221 11244677888888885 459999999999999999999999
Q ss_pred hhHHHHHHHhccHHHHHHHHHHHcccCCCCch
Q 005506 445 LYMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (693)
Q Consensus 445 ~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~ 476 (693)
+.+|.++..+|++++|.+.+++++.+.|.+..
T Consensus 173 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 204 (234)
T TIGR02521 173 LELAELYYLRGQYKDARAYLERYQQTYNQTAE 204 (234)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 99999999999999999999999888776544
No 356
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=9e-05 Score=77.47 Aligned_cols=221 Identities=12% Similarity=0.069 Sum_probs=141.3
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC--C-cEEEEeccCCCcceEEEEEeeCCCCCEEEEEeC-CCcEEEEEc
Q 005506 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSS--R-KLLHSIETGHSANVFCTKFVPETSDELVVSGAG-DAEVRLFNL 124 (693)
Q Consensus 49 H~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~--~-~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~-Dg~V~vwdl 124 (693)
|.+.|+-+..+ -.+++.+++.||.++.|.... + ..+..+ ..|.+.|.+++.+-+ +-++.|++. |..++++|+
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhF-raHL~~I~sl~~S~d--g~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHF-RAHLGVILSLAVSYD--GWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhh-HHHHHHHHhhhcccc--ceeEeeccCcccceeEEEe
Confidence 77777766443 567999999999999998653 2 233334 578899999999888 688999787 999999999
Q ss_pred CCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCC----cEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEec
Q 005506 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP----HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (693)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~----~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~ 200 (693)
..-.- +..++ -......+.|....+ .+-++...+|.+.++|-+.....
T Consensus 84 En~Dm----------inmiK-L~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q----------------- 135 (558)
T KOG0882|consen 84 ENFDM----------INMIK-LVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ----------------- 135 (558)
T ss_pred eccch----------hhhcc-cccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCc-----------------
Confidence 85321 11111 111112233322112 22233346789999997654311
Q ss_pred cCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCC-CCCC-cccccCCCCCCcccccccCccccCCCC
Q 005506 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPL-TSCQKRMSPPPCVNYFCPMHLSEHGRS 278 (693)
Q Consensus 201 ~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (693)
.......|..+|.++.++|. +..+++....|.|..|...- .+.. ..+....+...-+..| ...
T Consensus 136 ------~~~fkklH~sPV~~i~y~qa-~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f--------~K~ 200 (558)
T KOG0882|consen 136 ------DGYFKKLHFSPVKKIRYNQA-GDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGF--------PKA 200 (558)
T ss_pred ------cceecccccCceEEEEeecc-ccceeeccccceeEeecCCCcccCccccccccccccchhhcc--------ccc
Confidence 12222346778999999997 68899998999999998762 1110 0010001100001001 111
Q ss_pred ccceEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceE
Q 005506 279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM 316 (693)
Q Consensus 279 ~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~ 316 (693)
....+++.|+|+|..+.+-+.|..|++|++.++.....
T Consensus 201 Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqe 238 (558)
T KOG0882|consen 201 KTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQE 238 (558)
T ss_pred ccCccceEEccccCcccccCcccEEEEEEeccchhhhh
Confidence 22478999999999999999999999999999764443
No 357
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.93 E-value=0.0034 Score=63.83 Aligned_cols=216 Identities=12% Similarity=0.055 Sum_probs=127.9
Q ss_pred EEEECC-CCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCC
Q 005506 55 AISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD 133 (693)
Q Consensus 55 ~l~~s~-~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~ 133 (693)
+..|.+ ++.++++--..+.|..|+..+++... +.... ..++++... +..|+.+.. +.+.++|+....-
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~---~~G~~~~~~--~g~l~v~~~-~~~~~~d~~~g~~---- 72 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG---PNGMAFDRP--DGRLYVADS-GGIAVVDPDTGKV---- 72 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS---EEEEEEECT--TSEEEEEET-TCEEEEETTTTEE----
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC---CceEEEEcc--CCEEEEEEc-CceEEEecCCCcE----
Confidence 577988 78888888789999999998875543 21122 777888833 245555555 4456668875421
Q ss_pred CCCCCCceee--cc-CCCCeEEEEEecCCCcEEEEEeCC--------CcEEEEeCCCCCCCCCCCCCCcccceEEEeccC
Q 005506 134 DNAITPSALY--QC-HTRRVKKLAVEVGNPHVVWSASED--------GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (693)
Q Consensus 134 ~~~~~~~~~~--~~-h~~~V~~la~sp~~~~~l~Sgs~D--------g~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~ 202 (693)
..+... .. .....+.+++.| +++++++.... |.|..++.. ++. ..+.
T Consensus 73 ----~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~------------~~~~---- 130 (246)
T PF08450_consen 73 ----TVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV------------TVVA---- 130 (246)
T ss_dssp ----EEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEE------------EEEE----
T ss_pred ----EEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeE------------EEEe----
Confidence 222222 11 345788999999 55666665543 445556554 210 1111
Q ss_pred CceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC-CcccccCCCCCCcccccccCccccCCCCccc
Q 005506 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP-LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH 281 (693)
Q Consensus 203 ~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (693)
......+.|+|+|++..++++-+..+.|..|++..... +.. ...+. .... .. ..
T Consensus 131 ----------~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~----------~~~~~--~~~~--~~-g~ 185 (246)
T PF08450_consen 131 ----------DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSN----------RRVFI--DFPG--GP-GY 185 (246)
T ss_dssp ----------EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEE----------EEEEE--E-SS--SS-CE
T ss_pred ----------cCcccccceEECCcchheeecccccceeEEEeccccccceee----------eeeEE--EcCC--CC-cC
Confidence 01234578999998545556777889999999864321 110 00110 0000 00 13
Q ss_pred eEEEEEcCCCCEEEEEecCCcEEEEECCCCCcceEEeecCCCceeEEe
Q 005506 282 LTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSF 329 (693)
Q Consensus 282 V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~ 329 (693)
.-.++++.+|+..++....+.|.++|.. ++....+..+...+..++|
T Consensus 186 pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 186 PDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp EEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred CCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence 6789999999988888889999999988 4544444444356666666
No 358
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.92 E-value=6.3e-05 Score=90.40 Aligned_cols=95 Identities=15% Similarity=0.142 Sum_probs=84.2
Q ss_pred hhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHHHH
Q 005506 373 SLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALE 452 (693)
Q Consensus 373 ~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~KA~~r~a~al~ 452 (693)
....|+ |.+|+..|.++++..|. ...|.|.|.++.+++ ++.+|+..+.+|++++|++..+++.+|.+|.
T Consensus 586 l~~~Gr-~~eAl~~~~~AL~l~P~-------~~a~~~LA~~l~~lG---~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~ 654 (987)
T PRK09782 586 RYIPGQ-PELALNDLTRSLNIAPS-------ANAYVARATIYRQRH---NVPAAVSDLRAALELEPNNSNYQAALGYALW 654 (987)
T ss_pred HHhCCC-HHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 334488 99999999999987763 467899999999964 4999999999999999999999999999999
Q ss_pred HhccHHHHHHHHHHHcccCCCCchhH
Q 005506 453 QLCKYKEALDFAIAAQCLDPSNSVMA 478 (693)
Q Consensus 453 ~l~~~~eA~~~~~~~~~~~p~~~~~~ 478 (693)
.+|++++|++.++++++++|++..+.
T Consensus 655 ~~G~~eeAi~~l~~AL~l~P~~~~a~ 680 (987)
T PRK09782 655 DSGDIAQSREMLERAHKGLPDDPALI 680 (987)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999999999999987654
No 359
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.91 E-value=1.6e-06 Score=87.57 Aligned_cols=116 Identities=8% Similarity=-0.125 Sum_probs=101.0
Q ss_pred hhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcch
Q 005506 364 RMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRA 443 (693)
Q Consensus 364 ~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~KA 443 (693)
-.++..|+.+++.|. |..||++|...+...... ..|-.| +.+|+|... +..|+.||.+++-++|.+.++
T Consensus 235 l~~K~~G~~Fsk~~~-~~~~i~~~~~~~A~~~~~------~~L~~~-~~~~~KI~~---~~~~~~~~~~~~~~~~s~~~~ 303 (536)
T KOG4648|consen 235 LPIKKPGYKFSKKAM-RSVPVVDVVSPRATIDDS------NQLRIS-DEDIDKIFN---SNCGIIEEVKKTNPKPTPMPD 303 (536)
T ss_pred ccccCcchhhhhhhc-cccceeEeeccccccCcc------ccCccc-HHHHHHHhh---cchhHHHHHHhcCCCCCcCcc
Confidence 346788999999999 999999999887765444 445556 999999876 889999999999999999999
Q ss_pred hhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHHHHHHHHH
Q 005506 444 HLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAA 490 (693)
Q Consensus 444 ~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l~~~i~~ 490 (693)
.-|++.|..-+|...||..++++++.+.|.+......+.+++.+|-.
T Consensus 304 ~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~~~~sr~~~~ii~ 350 (536)
T KOG4648|consen 304 TSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETPKETETRKDTKIVP 350 (536)
T ss_pred cCCCchhHHHHhhhhhcCcchhheeeeccccccchhhhhhhcccccc
Confidence 99999999999999999999999999999999888777777766543
No 360
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.91 E-value=5.3e-05 Score=88.29 Aligned_cols=99 Identities=14% Similarity=0.097 Sum_probs=73.6
Q ss_pred HHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHH----HHHhHhHhhccCCCCcchhh
Q 005506 370 ARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQM----AIRDCYNARRIDSSSFRAHL 445 (693)
Q Consensus 370 gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~----Al~Dc~~Al~l~p~~~KA~~ 445 (693)
+...+..|+ |.+|+..|.+++...|.. ..++.+.|.+|.+++. +.+ |+..+.+|++++|++..+++
T Consensus 219 ~~~l~~~g~-~~eA~~~~~~al~~~p~~------~~~~~~Lg~~l~~~G~---~~eA~~~A~~~~~~Al~l~P~~~~a~~ 288 (656)
T PRK15174 219 VDTLCAVGK-YQEAIQTGESALARGLDG------AALRRSLGLAYYQSGR---SREAKLQAAEHWRHALQFNSDNVRIVT 288 (656)
T ss_pred HHHHHHCCC-HHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCC---chhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 445566777 888888888888877665 5667777777777544 553 67778888888888888888
Q ss_pred hHHHHHHHhccHHHHHHHHHHHcccCCCCchhH
Q 005506 446 YMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA 478 (693)
Q Consensus 446 r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~ 478 (693)
.+|.++..+|++++|+..+++++.++|++..+.
T Consensus 289 ~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~ 321 (656)
T PRK15174 289 LYADALIRTGQNEKAIPLLQQSLATHPDLPYVR 321 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 888888888888888888888888888776543
No 361
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.91 E-value=4.6e-05 Score=69.59 Aligned_cols=85 Identities=20% Similarity=0.144 Sum_probs=74.9
Q ss_pred HhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHH
Q 005506 385 EACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFA 464 (693)
Q Consensus 385 ~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~KA~~r~a~al~~l~~~~eA~~~~ 464 (693)
+.|.+++...|.. ...+.++|.++++. |++.+|+....++++++|.+..+++++|.++..+|++++|.+.+
T Consensus 4 ~~~~~~l~~~p~~------~~~~~~~a~~~~~~---~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 74 (135)
T TIGR02552 4 ATLKDLLGLDSEQ------LEQIYALAYNLYQQ---GRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAY 74 (135)
T ss_pred hhHHHHHcCChhh------HHHHHHHHHHHHHc---ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888877765 55678899999986 45999999999999999999999999999999999999999999
Q ss_pred HHHcccCCCCchhH
Q 005506 465 IAAQCLDPSNSVMA 478 (693)
Q Consensus 465 ~~~~~~~p~~~~~~ 478 (693)
+++++.+|.+....
T Consensus 75 ~~~~~~~p~~~~~~ 88 (135)
T TIGR02552 75 ALAAALDPDDPRPY 88 (135)
T ss_pred HHHHhcCCCChHHH
Confidence 99999999986654
No 362
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.90 E-value=9.3e-05 Score=86.25 Aligned_cols=106 Identities=17% Similarity=0.045 Sum_probs=78.4
Q ss_pred cchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCC
Q 005506 360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSS 439 (693)
Q Consensus 360 ~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~ 439 (693)
+.....+...|.-.++.|+ |.+|+..|.+++...|.. ...+.+.+.+|.+. |++.+|+..+.++++.+|.
T Consensus 281 P~~~~a~~~lg~~l~~~g~-~~eA~~~l~~al~l~P~~------~~a~~~La~~l~~~---G~~~eA~~~l~~al~~~P~ 350 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQ-NEKAIPLLQQSLATHPDL------PYVRAMYARALRQV---GQYTAASDEFVQLAREKGV 350 (656)
T ss_pred CCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHC---CCHHHHHHHHHHHHHhCcc
Confidence 3344455566677777777 778888888888777665 55677777777775 4488888888888888888
Q ss_pred CcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCc
Q 005506 440 SFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS 475 (693)
Q Consensus 440 ~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~ 475 (693)
+..+++++|.++..+|++++|.+.|++++++.|++.
T Consensus 351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 777777778888888888888888888888877753
No 363
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.89 E-value=9.7e-06 Score=87.95 Aligned_cols=225 Identities=20% Similarity=0.277 Sum_probs=135.8
Q ss_pred ccCCCcEEEEEECC-CCCEEEEEe----CCCcEEEEECCCC--cEE--EEeccCCCcceEEEEEeeCCCCCEEEEEeCCC
Q 005506 47 EGHQGCVNAISWNS-KGSLLISGS----DDTHINVWSYSSR--KLL--HSIETGHSANVFCTKFVPETSDELVVSGAGDA 117 (693)
Q Consensus 47 ~gH~~~V~~l~~s~-~g~~LaSgs----~Dg~I~IWd~~~~--~~~--~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg 117 (693)
.+|....++++|++ |.+.||.|- .|..+.|||+.++ .+. ..+..+......+++|..+ ..++.+|....
T Consensus 99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd--~klvlaGm~sr 176 (783)
T KOG1008|consen 99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRD--TKLVLAGMTSR 176 (783)
T ss_pred ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccC--cchhhcccccc
Confidence 46778899999998 567788774 4667999999876 111 1222224445668999865 58889999999
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEe-CCCCCCCCCCCCCCcccceE
Q 005506 118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD-FRQGSSCPPAGSSHQECRNI 196 (693)
Q Consensus 118 ~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwD-lr~~~~~~~~~~~~~~~~~~ 196 (693)
.|+++|++... .....-.+..|..+.+.|-.++++++-. ||.|-+|| .+.-+.+
T Consensus 177 ~~~ifdlRqs~-----------~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienp------------- 231 (783)
T KOG1008|consen 177 SVHIFDLRQSL-----------DSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENP------------- 231 (783)
T ss_pred hhhhhhhhhhh-----------hhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccH-------------
Confidence 99999999532 2222223556778888887788886554 99999999 4443321
Q ss_pred EEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCC-CcEEEEecCCCCCCcccccCCCCCCcccccccCccccC
Q 005506 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275 (693)
Q Consensus 197 l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~D-g~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (693)
+.. .+.........+..++|+|..+.++++...| ++|++||+..-........ ...+.+..+......
T Consensus 232 l~~-------i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn----~~~~~~~s~~~~q~~ 300 (783)
T KOG1008|consen 232 LQI-------ILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANN----SVFVNYESKYPVQPN 300 (783)
T ss_pred HHH-------HhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccc----cceeeeccccccccc
Confidence 000 0011111223578999999988888887765 7899999874321111000 011111111111111
Q ss_pred CCCccceEEEEEcCCC--CEEEEEecCCcEEEEECCC
Q 005506 276 GRSSLHLTHVTFSPNG--EEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 276 ~~~~~~V~~v~fspdg--~~L~sgs~Dg~V~lwdl~~ 310 (693)
+.- ..|...+||+.. ...+++..+-++.-|++..
T Consensus 301 ~~~-s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~e 336 (783)
T KOG1008|consen 301 SQC-SGIDFFTWHTASPTERQILGVINLQPKDFSVHE 336 (783)
T ss_pred ccc-cceeecCcCcCCccceeEEeeccCChhhccchh
Confidence 111 247788888754 3345555555666666544
No 364
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.89 E-value=0.0021 Score=68.60 Aligned_cols=242 Identities=14% Similarity=0.142 Sum_probs=142.0
Q ss_pred CcEEEEEECCCCCEEEEEeCCC---------------cEEEEECCCCcEEEEeccCCCcc--eE-EEEEeeCCCCCEEEE
Q 005506 51 GCVNAISWNSKGSLLISGSDDT---------------HINVWSYSSRKLLHSIETGHSAN--VF-CTKFVPETSDELVVS 112 (693)
Q Consensus 51 ~~V~~l~~s~~g~~LaSgs~Dg---------------~I~IWd~~~~~~~~~l~~~h~~~--I~-sv~f~p~~~~~~l~s 112 (693)
..|.-+.|+|.+++|.|-+.-+ .+.|||..++..+..+ .+-..+ .+ -++|+-+ +.++|=
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf-~~~~q~~~~Wp~~k~s~~--D~y~AR 148 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSF-NGISQPYLGWPVLKFSID--DKYVAR 148 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeec-cccCCcccccceeeeeec--chhhhh
Confidence 4688999999999999976544 4999999999988887 343333 55 6788877 455554
Q ss_pred EeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecC-CCcEEEE-----EeCCCcEEEEeCCCCCCCCCC
Q 005506 113 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-NPHVVWS-----ASEDGTLRQHDFRQGSSCPPA 186 (693)
Q Consensus 113 gs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~-~~~~l~S-----gs~Dg~V~lwDlr~~~~~~~~ 186 (693)
. ....++|+++... -. ..+.+.+. ...|...+|+|. +...|+. .+.++.+++|.+.........
T Consensus 149 v-v~~sl~i~e~t~n-~~------~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk 218 (561)
T COG5354 149 V-VGSSLYIHEITDN-IE------EHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTK 218 (561)
T ss_pred h-ccCeEEEEecCCc-cc------cCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeee
Confidence 4 3467999997321 11 02222222 356788888884 2223332 356778999988754322100
Q ss_pred C-------------CCCcccc-----------------eEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEE--E
Q 005506 187 G-------------SSHQECR-----------------NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV--G 234 (693)
Q Consensus 187 ~-------------~~~~~~~-----------------~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Lat--g 234 (693)
. .+..-|. ..|+.+..... ........+|...+|+|.. ..+++ |
T Consensus 219 ~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i---~V~~~~~~pVhdf~W~p~S-~~F~vi~g 294 (561)
T COG5354 219 NLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI---PVEKDLKDPVHDFTWEPLS-SRFAVISG 294 (561)
T ss_pred eeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc---ceeccccccceeeeecccC-CceeEEec
Confidence 0 0000000 11111111110 0111235689999999974 45544 3
Q ss_pred eCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecC---CcEEEEECCCC
Q 005506 235 GSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---EHVYLMDVNHA 311 (693)
Q Consensus 235 s~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~D---g~V~lwdl~~~ 311 (693)
-.+..+.++|++.. +..+.|. + .=+.+.|+|.+++++.++-| |.|-+||..+.
T Consensus 295 ~~pa~~s~~~lr~N---------------l~~~~Pe-----~----~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r 350 (561)
T COG5354 295 YMPASVSVFDLRGN---------------LRFYFPE-----Q----KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR 350 (561)
T ss_pred ccccceeecccccc---------------eEEecCC-----c----ccccccccCcccEEEEecCCccccceEEeccCCc
Confidence 57889999999853 1111111 1 13458899999999987764 68999998874
Q ss_pred CcceEEeecCCCceeEEeccCCC
Q 005506 312 GGRAMRYTVGDASKIMSFTPTLN 334 (693)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~p~~~ 334 (693)
-.....+ .+.......|+|+..
T Consensus 351 f~~~~~~-~~~n~s~~~wspd~q 372 (561)
T COG5354 351 FKVAGAF-NGLNTSYCDWSPDGQ 372 (561)
T ss_pred eEEEEEe-ecCCceEeeccCCce
Confidence 3222122 223344455777643
No 365
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.88 E-value=3.7e-05 Score=82.24 Aligned_cols=64 Identities=14% Similarity=-0.053 Sum_probs=60.0
Q ss_pred hhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcch---hhhHHHHHHHhccHHHHHHHHHHHccc
Q 005506 404 HECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRA---HLYMSEALEQLCKYKEALDFAIAAQCL 470 (693)
Q Consensus 404 ~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~KA---~~r~a~al~~l~~~~eA~~~~~~~~~~ 470 (693)
+..+.|++.+|.++ |+|.+|+..+.+||+++|++..| ||.+|-||..+|++++|++++++++++
T Consensus 75 a~a~~NLG~AL~~l---GryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSK---GRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 67899999999996 45999999999999999999965 999999999999999999999999987
No 366
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.88 E-value=0.00063 Score=73.24 Aligned_cols=148 Identities=16% Similarity=0.217 Sum_probs=99.9
Q ss_pred EEEECCCCC-EEE--EEeCC---------CcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE
Q 005506 55 AISWNSKGS-LLI--SGSDD---------THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (693)
Q Consensus 55 ~l~~s~~g~-~La--Sgs~D---------g~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vw 122 (693)
.+.|++-|+ +|+ +..-| .++.+.++....+...+ ...++|.++.|+|++..--++-|-.=.+|.||
T Consensus 222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L--~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtif 299 (566)
T KOG2315|consen 222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL--LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIF 299 (566)
T ss_pred EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec--CCCCCceEEEECCCCCEEEEEEecccceEEEE
Confidence 577888665 333 33333 35777777744555544 46799999999999422234445567789999
Q ss_pred EcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCC---CcEEEEeCCCCCCCCCCCCCCcccceEEEe
Q 005506 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED---GTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (693)
Q Consensus 123 dl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~D---g~V~lwDlr~~~~~~~~~~~~~~~~~~l~~ 199 (693)
|++- .++..+ -.++=.++-|+| .+++|+.+|.+ |.|-+||+.+.+.+...
T Consensus 300 nlr~-----------~~v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~------------- 352 (566)
T KOG2315|consen 300 NLRG-----------KPVFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLIAKF------------- 352 (566)
T ss_pred cCCC-----------CEeEeC--CCCCccceEECC-CCCEEEEeecCCCCCceEEEeccchhhcccc-------------
Confidence 9984 344444 356678899999 66787777764 78999999875432100
Q ss_pred ccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeC------CCcEEEEecC
Q 005506 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS------DAFARLYDRR 246 (693)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~------Dg~IriwD~r 246 (693)
.....+-+.|+|+ |.+|+|+.. |..++||+..
T Consensus 353 --------------~a~~tt~~eW~Pd-Ge~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 353 --------------KAANTTVFEWSPD-GEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred --------------ccCCceEEEEcCC-CcEEEEEeccccEEecCCeEEEEec
Confidence 0123456899997 788888865 7889999975
No 367
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.86 E-value=0.00052 Score=74.85 Aligned_cols=136 Identities=16% Similarity=0.174 Sum_probs=97.2
Q ss_pred ccccchhhhcccceeEEeccCCCcEEEEEECC-CCCEEEEE----eCCCcE----EEEECCCCcE--EEEeccCCCcceE
Q 005506 29 SLQMHSSLVRRLSQERELEGHQGCVNAISWNS-KGSLLISG----SDDTHI----NVWSYSSRKL--LHSIETGHSANVF 97 (693)
Q Consensus 29 ~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~-~g~~LaSg----s~Dg~I----~IWd~~~~~~--~~~l~~~h~~~I~ 97 (693)
++.+......+++++..++.-.++ .++.|+. ++..+.|. +.+|.+ ++|++...+. +..........|.
T Consensus 185 Nl~L~~~~~~klEvL~yirTE~dP-l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~ 263 (545)
T PF11768_consen 185 NLHLLSCSGGKLEVLSYIRTENDP-LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVI 263 (545)
T ss_pred cEEEEEecCCcEEEEEEEEecCCc-EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcce
Confidence 455555444566666666654454 5777886 44555544 334443 5677765542 2222236788999
Q ss_pred EEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 005506 98 CTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDF 177 (693)
Q Consensus 98 sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDl 177 (693)
|++++|+ ...|+.|+.||+|.+||.... +..+....-.++.++|+| ++.+|++|+.-|.+.+||+
T Consensus 264 ~ca~sp~--E~kLvlGC~DgSiiLyD~~~~------------~t~~~ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 264 CCARSPS--EDKLVLGCEDGSIILYDTTRG------------VTLLAKAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDM 328 (545)
T ss_pred EEecCcc--cceEEEEecCCeEEEEEcCCC------------eeeeeeecccceEEEEcC-CCcEEEEEcCCceEEEEEe
Confidence 9999999 689999999999999999853 333444567789999999 7789999999999999998
Q ss_pred CCC
Q 005506 178 RQG 180 (693)
Q Consensus 178 r~~ 180 (693)
.-.
T Consensus 329 ALs 331 (545)
T PF11768_consen 329 ALS 331 (545)
T ss_pred ecC
Confidence 654
No 368
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.86 E-value=0.00012 Score=72.58 Aligned_cols=101 Identities=17% Similarity=0.054 Sum_probs=87.3
Q ss_pred chhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCC
Q 005506 361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS 440 (693)
Q Consensus 361 ~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~ 440 (693)
..+......|...+..|+ |..|+..+.++++..|.. ...+.++|.+|+.. |++..|+....++++++|.+
T Consensus 29 ~~~~~~~~la~~~~~~~~-~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~~~~ 98 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGD-LEVAKENLDKALEHDPDD------YLAYLALALYYQQL---GELEKAEDSFRRALTLNPNN 98 (234)
T ss_pred cHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCC
Confidence 345666778888899999 999999999999987765 56788889999885 45999999999999999999
Q ss_pred cchhhhHHHHHHHhccHHHHHHHHHHHcccC
Q 005506 441 FRAHLYMSEALEQLCKYKEALDFAIAAQCLD 471 (693)
Q Consensus 441 ~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~ 471 (693)
..+++.++.++..+|++++|.+.+++++...
T Consensus 99 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 129 (234)
T TIGR02521 99 GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP 129 (234)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999998753
No 369
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.84 E-value=0.0002 Score=80.82 Aligned_cols=157 Identities=17% Similarity=0.218 Sum_probs=113.7
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeC---------CCcEE
Q 005506 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---------DAEVR 120 (693)
Q Consensus 50 ~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~---------Dg~V~ 120 (693)
.+.|.-|+. +++.|.+|...|+|.+-|+.+.+.++++ ..|.+.|.++... |++|+||+. |..|+
T Consensus 177 a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~-~aHs~siSDfDv~----GNlLitCG~S~R~~~l~~D~Fvk 249 (1118)
T KOG1275|consen 177 ASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTF-DAHSGSISDFDVQ----GNLLITCGYSMRRYNLAMDPFVK 249 (1118)
T ss_pred CCceEEEEe--cCcEEEeecccceEEeecCCcCceeeee-eccccceeeeecc----CCeEEEeecccccccccccchhh
Confidence 334665554 5789999999999999999999999999 7999999887654 679999986 56689
Q ss_pred EEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEec
Q 005506 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (693)
Q Consensus 121 vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~ 200 (693)
|||++... .+..+.-+.++ .-+.|+|.-...++.++..|...+-|..+-..++. .+..
T Consensus 250 VYDLRmmr----------al~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~---------~~~~-- 307 (1118)
T KOG1275|consen 250 VYDLRMMR----------ALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPA---------GVKM-- 307 (1118)
T ss_pred hhhhhhhh----------ccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCcc---------ceeE--
Confidence 99999642 22222223332 55788897788899999999999988544321100 0000
Q ss_pred cCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecC
Q 005506 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR 246 (693)
Q Consensus 201 ~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r 246 (693)
..+ ....+..+.+++. +..||.|..+|.|.+|--+
T Consensus 308 ---------v~p-~~s~i~~fDiSsn-~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 308 ---------VNP-NGSGISAFDISSN-GDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred ---------Ecc-CCCcceeEEecCC-CceEEEecccCcEeeecCC
Confidence 001 1234889999997 7899999999999999843
No 370
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.84 E-value=7.7e-05 Score=82.09 Aligned_cols=124 Identities=17% Similarity=0.110 Sum_probs=103.8
Q ss_pred cccCcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhc
Q 005506 356 VATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARR 435 (693)
Q Consensus 356 ~~~~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~ 435 (693)
....+..-..+--.|--++++++ |+.|.-.|.+|++.+|.+ .++.+--...+.+++. .+.||+-.++|+.
T Consensus 482 l~~~~rhYnAwYGlG~vy~Kqek-~e~Ae~~fqkA~~INP~n------svi~~~~g~~~~~~k~---~d~AL~~~~~A~~ 551 (638)
T KOG1126|consen 482 LGVDPRHYNAWYGLGTVYLKQEK-LEFAEFHFQKAVEINPSN------SVILCHIGRIQHQLKR---KDKALQLYEKAIH 551 (638)
T ss_pred hcCCchhhHHHHhhhhheeccch-hhHHHHHHHhhhcCCccc------hhHHhhhhHHHHHhhh---hhHHHHHHHHHHh
Confidence 34456666777888888999999 999999999999999887 5655555666666554 8899999999999
Q ss_pred cCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHHHHHHHH
Q 005506 436 IDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIA 489 (693)
Q Consensus 436 l~p~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l~~~i~ 489 (693)
+||.++-.-|.+|+.|..+++|+||+..|+.+.++.|++..+-..+-++.+++.
T Consensus 552 ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~ 605 (638)
T KOG1126|consen 552 LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLG 605 (638)
T ss_pred cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999998877655555555443
No 371
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.82 E-value=0.00085 Score=71.49 Aligned_cols=228 Identities=14% Similarity=0.180 Sum_probs=141.2
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCc----------
Q 005506 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE---------- 118 (693)
Q Consensus 49 H~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~---------- 118 (693)
-.-+++..+|||.|.+|++...- .|.+|.......+..+ .| ..|..+.|+|. +.+|+|-+....
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~--~~-~~V~~~~fSP~--~kYL~tw~~~pi~~pe~e~sp~ 104 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRF--RH-PDVKYLDFSPN--EKYLVTWSREPIIEPEIEISPF 104 (561)
T ss_pred cCcchhheeecCcchheehhhcc-ceEEccccchhheeee--ec-CCceecccCcc--cceeeeeccCCccChhhccCCc
Confidence 45689999999999999988764 5999998877766665 24 45899999999 689998876544
Q ss_pred -----EEEEEcCCCCCCCCCCCCCCCceeeccCCCC--eE-EEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCC
Q 005506 119 -----VRLFNLSRFSGRGLDDNAITPSALYQCHTRR--VK-KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSH 190 (693)
Q Consensus 119 -----V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~--V~-~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~ 190 (693)
+.+||+..+ ..+..+..-..+ .. -+.|+- +..+.+-. ....+.++++ +.... .
T Consensus 105 ~~~n~~~vwd~~sg----------~iv~sf~~~~q~~~~Wp~~k~s~-~D~y~ARv-v~~sl~i~e~-t~n~~----~-- 165 (561)
T COG5354 105 TSKNNVFVWDIASG----------MIVFSFNGISQPYLGWPVLKFSI-DDKYVARV-VGSSLYIHEI-TDNIE----E-- 165 (561)
T ss_pred cccCceeEEeccCc----------eeEeeccccCCcccccceeeeee-cchhhhhh-ccCeEEEEec-CCccc----c--
Confidence 889998854 334444444433 33 456665 33343322 2346888886 32211 0
Q ss_pred cccceEEEeccCCceeeecCCCCCccceEEEEEcCC-CCcEEE-----EEeCCCcEEEEecCCCCCCcccccCCCCCCcc
Q 005506 191 QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST-RPHLLL-----VGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV 264 (693)
Q Consensus 191 ~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~-~~~~La-----tgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~ 264 (693)
..+-. .....+...+|+|. ++..|| .++..+.+++|.+...+.+.+.
T Consensus 166 ----~p~~~-------------lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk---------- 218 (561)
T COG5354 166 ----HPFKN-------------LRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTK---------- 218 (561)
T ss_pred ----Cchhh-------------ccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeee----------
Confidence 00000 01234556666664 122233 2467889999998855433211
Q ss_pred cccccCccccCCCCccceEEEEEcCCCCEEEEEec-----------CCcEEEEECCCCCcceEEeecCCCceeEEeccCC
Q 005506 265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-----------GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL 333 (693)
Q Consensus 265 ~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~-----------Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~ 333 (693)
..| ...=..+.|.+.|.+|++--. ...+||+++.. ...++.....+++..++|.|..
T Consensus 219 ~lf-----------k~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e-~~i~V~~~~~~pVhdf~W~p~S 286 (561)
T COG5354 219 NLF-----------KVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE-RSIPVEKDLKDPVHDFTWEPLS 286 (561)
T ss_pred eeE-----------eecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc-cccceeccccccceeeeecccC
Confidence 011 001235788899988764322 34689999985 3334443557889999999998
Q ss_pred CcccccC
Q 005506 334 NGLELQP 340 (693)
Q Consensus 334 ~g~~~~~ 340 (693)
++.....
T Consensus 287 ~~F~vi~ 293 (561)
T COG5354 287 SRFAVIS 293 (561)
T ss_pred CceeEEe
Confidence 8765443
No 372
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.82 E-value=0.006 Score=73.32 Aligned_cols=262 Identities=16% Similarity=0.202 Sum_probs=146.1
Q ss_pred cccccchhhhcccceeEEeccCCCcEEEEEECCCCCEEEEEeC---CCcEEEEECCCCcEEEEec---cCCCcceEEEEE
Q 005506 28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSD---DTHINVWSYSSRKLLHSIE---TGHSANVFCTKF 101 (693)
Q Consensus 28 ~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~---Dg~I~IWd~~~~~~~~~l~---~~h~~~I~sv~f 101 (693)
+.+++|+- .+.+..+-+.-.+--.+|+|-|+|+++|+... ...|.+|.-+ |-.-..|. ......|..++|
T Consensus 237 R~iRVy~R---eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~W 312 (928)
T PF04762_consen 237 RVIRVYSR---EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAW 312 (928)
T ss_pred eEEEEECC---CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEE
Confidence 45555542 23344444433444457899999999999864 3457777743 33333332 235678999999
Q ss_pred eeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeecc-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 005506 102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC-HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180 (693)
Q Consensus 102 ~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~-h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~ 180 (693)
+++ +.+||..-.|. |.+|-..+-.- -..+.+.. ....+..+.|+|..+..|...+.+|.+..+++.-.
T Consensus 313 n~d--s~iLAv~~~~~-vqLWt~~NYHW--------YLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~ 381 (928)
T PF04762_consen 313 NSD--SEILAVWLEDR-VQLWTRSNYHW--------YLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWD 381 (928)
T ss_pred CCC--CCEEEEEecCC-ceEEEeeCCEE--------EEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEE
Confidence 999 48888877655 99998875311 11122221 23345569999999998988888888876655322
Q ss_pred CCCCCCCCCCcccceEEEeccCCce----eeecCCC------CCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC
Q 005506 181 SSCPPAGSSHQECRNILLDLRCGAK----RSLADPP------KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP 250 (693)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~~~~----~~l~~~~------~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~ 250 (693)
.........+..+...++|-..=.. ..+..+| .-...|.+++|+++ +..+++-..||.|.+|.......
T Consensus 382 v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~-~~~~avl~~d~~l~~~~~~~~~~ 460 (928)
T PF04762_consen 382 VSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPS-NSRFAVLTSDGSLSIYEWDLKNM 460 (928)
T ss_pred EEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCC-CCeEEEEECCCCEEEEEecCCCc
Confidence 1111111111222233333111000 0111111 12357899999997 45699999999999998654321
Q ss_pred CcccccCCCCCCcccccccC--ccccCCCCccceEEEEEcCCCCEEEEEecC---CcEEEEECCC
Q 005506 251 LTSCQKRMSPPPCVNYFCPM--HLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---EHVYLMDVNH 310 (693)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~V~~v~fspdg~~L~sgs~D---g~V~lwdl~~ 310 (693)
... .++.....+... ...........+..++|..+...++....+ ..+.++++..
T Consensus 461 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 520 (928)
T PF04762_consen 461 WSV-----KPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDD 520 (928)
T ss_pred ccc-----cCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEecc
Confidence 100 000000011000 000001112247889998888777766654 6788888854
No 373
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.80 E-value=0.00021 Score=82.74 Aligned_cols=122 Identities=11% Similarity=-0.032 Sum_probs=103.0
Q ss_pred CcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCC
Q 005506 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS 438 (693)
Q Consensus 359 ~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p 438 (693)
.|+........+.-.++.++ +++|+..+.+++...|+. +..++++|.++.+.+. +.+|+.-..+++.-+|
T Consensus 116 ~Pd~~~a~~~~a~~L~~~~~-~eeA~~~~~~~l~~~p~~------~~~~~~~a~~l~~~g~---~~~A~~~y~~~~~~~p 185 (694)
T PRK15179 116 FPDSSEAFILMLRGVKRQQG-IEAGRAEIELYFSGGSSS------AREILLEAKSWDEIGQ---SEQADACFERLSRQHP 185 (694)
T ss_pred CCCcHHHHHHHHHHHHHhcc-HHHHHHHHHHHhhcCCCC------HHHHHHHHHHHHHhcc---hHHHHHHHHHHHhcCC
Confidence 55666777788888899999 999999999999999888 8889999999999755 9999999999999999
Q ss_pred CCcchhhhHHHHHHHhccHHHHHHHHHHHcccCC-CCchhHHHHHHHHHHHHH
Q 005506 439 SSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDP-SNSVMAEKVENIKKHIAA 490 (693)
Q Consensus 439 ~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p-~~~~~~~~~~~l~~~i~~ 490 (693)
++.+|++.+|.+|..+|+.++|...|++++.+.. ..+.....+-++.++...
T Consensus 186 ~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 238 (694)
T PRK15179 186 EFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLVDLNADLAA 238 (694)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998764 333333444445444433
No 374
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.80 E-value=0.0015 Score=70.15 Aligned_cols=220 Identities=11% Similarity=0.169 Sum_probs=136.4
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCC-----------CcEEE
Q 005506 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-----------AEVRL 121 (693)
Q Consensus 53 V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~D-----------g~V~v 121 (693)
=+-+.|||.|++|+|-..-| |.+|--.+...++.+ .|.+ |.-+.|+|+ .++|+|-+.. ..++|
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF--~Hp~-Vq~idfSP~--EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF--YHPG-VQFIDFSPN--EKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhc--cCCC-ceeeecCCc--cceEEEecCCccccCcccCCCceEEE
Confidence 45689999999999998765 999987777777777 4664 888999999 6899987742 46899
Q ss_pred EEcCCCCCCCCCCCCCCCceeecc--CCCCe-EEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEE
Q 005506 122 FNLSRFSGRGLDDNAITPSALYQC--HTRRV-KKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (693)
Q Consensus 122 wdl~~~~~~~~~~~~~~~~~~~~~--h~~~V-~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~ 198 (693)
||+.++. ....+.. ....+ .-+.|+. +.+++|.-.. .+|.||+..+.. ++
T Consensus 287 WDI~tG~----------lkrsF~~~~~~~~~WP~frWS~-DdKy~Arm~~-~sisIyEtpsf~---------------ll 339 (698)
T KOG2314|consen 287 WDIATGL----------LKRSFPVIKSPYLKWPIFRWSH-DDKYFARMTG-NSISIYETPSFM---------------LL 339 (698)
T ss_pred EEccccc----------hhcceeccCCCccccceEEecc-CCceeEEecc-ceEEEEecCcee---------------ee
Confidence 9999752 2333332 11222 2357887 6678866655 578888865422 22
Q ss_pred eccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEe-----CCCcEEEEecCCCCCCcccccCCCCCCcccccccCccc
Q 005506 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-----SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 273 (693)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs-----~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (693)
+.++ .....|....|+|. +++||-=. .-..+.|..+.+.+.+++. +.|
T Consensus 340 d~Ks----------lki~gIr~FswsP~-~~llAYwtpe~~~~parvtL~evPs~~~iRt~----------nlf------ 392 (698)
T KOG2314|consen 340 DKKS----------LKISGIRDFSWSPT-SNLLAYWTPETNNIPARVTLMEVPSKREIRTK----------NLF------ 392 (698)
T ss_pred cccc----------cCCccccCcccCCC-cceEEEEcccccCCcceEEEEecCccceeeec----------cce------
Confidence 2111 12345778889996 45555211 1123344444433222111 000
Q ss_pred cCCCCccce--EEEEEcCCCCEEEEEec----------CCcEEEEECCCCCcceEEeecCCCceeEEeccCCCccccc
Q 005506 274 EHGRSSLHL--THVTFSPNGEEVLLSYS----------GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQ 339 (693)
Q Consensus 274 ~~~~~~~~V--~~v~fspdg~~L~sgs~----------Dg~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~ 339 (693)
.| ..+-|-.+|.+|+.--. =..+-||.++....+.......++.-.++|-|..+.....
T Consensus 393 -------nVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi 463 (698)
T KOG2314|consen 393 -------NVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVI 463 (698)
T ss_pred -------eeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEE
Confidence 12 23556678888775432 1246788888866666666667778888888887765443
No 375
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.79 E-value=2.2e-05 Score=85.35 Aligned_cols=210 Identities=12% Similarity=0.174 Sum_probs=134.6
Q ss_pred CCcEEEEEECCCC--CEEEEEeCCCcEEEEECCCCc-EEEEeccCCCcceEEEEEeeCCCCCEEEEEe----CCCcEEEE
Q 005506 50 QGCVNAISWNSKG--SLLISGSDDTHINVWSYSSRK-LLHSIETGHSANVFCTKFVPETSDELVVSGA----GDAEVRLF 122 (693)
Q Consensus 50 ~~~V~~l~~s~~g--~~LaSgs~Dg~I~IWd~~~~~-~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs----~Dg~V~vw 122 (693)
...+.|++++-+. .+++.|..+|.|-+-.+.... .-..+..+|....++++|++-. .+.||+|- .|..+.||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLD-tn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELD-TNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceeccccccccccccccccc-HHHHHhhhhhhcccCCccce
Confidence 4467888887643 589999999999998875432 2234446888999999999872 45677663 36779999
Q ss_pred EcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccC
Q 005506 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (693)
Q Consensus 123 dl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~ 202 (693)
|+...-... .+......+....+.+++|.. +..++.+|.....|+++|+|......
T Consensus 135 di~s~ltvP-----ke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~~~~------------------ 190 (783)
T KOG1008|consen 135 DINSLLTVP-----KESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSLDSV------------------ 190 (783)
T ss_pred ecccccCCC-----ccccccccccccCcccccccc-Ccchhhcccccchhhhhhhhhhhhhh------------------
Confidence 998641111 011111112345566888884 77888899999999999999643110
Q ss_pred CceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEe-cCCCC-CCcccccCCCCCCcccccccCccccCCCCcc
Q 005506 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD-RRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 280 (693)
Q Consensus 203 ~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD-~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (693)
.. -.+..+..+.+.|-.++++++-. ||.|-+|| .++.+ ++..+..... ....
T Consensus 191 ---~s-----vnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N----------------~~~~- 244 (783)
T KOG1008|consen 191 ---SS-----VNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNEN----------------KKPK- 244 (783)
T ss_pred ---hh-----hhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCC----------------Cccc-
Confidence 00 01234566788886677877665 99999999 44433 2211111000 0111
Q ss_pred ceEEEEEcCCCCE-EEEEec-CCcEEEEECCC
Q 005506 281 HLTHVTFSPNGEE-VLLSYS-GEHVYLMDVNH 310 (693)
Q Consensus 281 ~V~~v~fspdg~~-L~sgs~-Dg~V~lwdl~~ 310 (693)
.+..++|.|...- |++.+. .++|+++|+..
T Consensus 245 ~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 245 QLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 4788999996543 344444 57999999875
No 376
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.79 E-value=9.8e-05 Score=72.45 Aligned_cols=93 Identities=15% Similarity=0.129 Sum_probs=83.6
Q ss_pred cCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHHH-HHh
Q 005506 376 EGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEAL-EQL 454 (693)
Q Consensus 376 ~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~KA~~r~a~al-~~l 454 (693)
.++ ..+++..+.++|...|++ ...|.+.+.+|+.. |++..|+.-+.+|++++|++..+++..|.++ ...
T Consensus 52 ~~~-~~~~i~~l~~~L~~~P~~------~~~w~~Lg~~~~~~---g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~ 121 (198)
T PRK10370 52 QQT-PEAQLQALQDKIRANPQN------SEQWALLGEYYLWR---NDYDNALLAYRQALQLRGENAELYAALATVLYYQA 121 (198)
T ss_pred chh-HHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHC---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 444 789999999999999988 78899999999996 5599999999999999999999999999997 677
Q ss_pred cc--HHHHHHHHHHHcccCCCCchhH
Q 005506 455 CK--YKEALDFAIAAQCLDPSNSVMA 478 (693)
Q Consensus 455 ~~--~~eA~~~~~~~~~~~p~~~~~~ 478 (693)
|+ +++|.+.++++++++|++..+.
T Consensus 122 g~~~~~~A~~~l~~al~~dP~~~~al 147 (198)
T PRK10370 122 GQHMTPQTREMIDKALALDANEVTAL 147 (198)
T ss_pred CCCCcHHHHHHHHHHHHhCCCChhHH
Confidence 87 5999999999999999987653
No 377
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.77 E-value=0.017 Score=59.51 Aligned_cols=223 Identities=13% Similarity=0.166 Sum_probs=133.2
Q ss_pred EEEEECC-CCCEEEEEeCCCc-EEEEECCCCcEEEEeccCCCcceE--EEEEeeCCCCCEEEEEeC-----CCcEEEEEc
Q 005506 54 NAISWNS-KGSLLISGSDDTH-INVWSYSSRKLLHSIETGHSANVF--CTKFVPETSDELVVSGAG-----DAEVRLFNL 124 (693)
Q Consensus 54 ~~l~~s~-~g~~LaSgs~Dg~-I~IWd~~~~~~~~~l~~~h~~~I~--sv~f~p~~~~~~l~sgs~-----Dg~V~vwdl 124 (693)
..++.+| .+..++.+-.-|+ ..+||..+++....+. ...+.-| --.|+|+ |++|+|.-. .|.|-|||.
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~-a~~gRHFyGHg~fs~d--G~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW-APPGRHFYGHGVFSPD--GRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc-CCCCCEEecCEEEcCC--CCEEEEeccccCCCcEEEEEEEC
Confidence 4577888 5667777777766 6799999998887763 2222222 2478998 688887644 478999999
Q ss_pred CCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCc
Q 005506 125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 204 (693)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (693)
... +..+..+..|.-....|.+.|++..++ .+- |-|.-. ..+++ .......+....++++..+|.
T Consensus 85 ~~~---------~~ri~E~~s~GIGPHel~l~pDG~tLv-VAN--GGI~Th-pd~GR--~kLNl~tM~psL~~ld~~sG~ 149 (305)
T PF07433_consen 85 ARG---------YRRIGEFPSHGIGPHELLLMPDGETLV-VAN--GGIETH-PDSGR--AKLNLDTMQPSLVYLDARSGA 149 (305)
T ss_pred cCC---------cEEEeEecCCCcChhhEEEcCCCCEEE-EEc--CCCccC-cccCc--eecChhhcCCceEEEecCCCc
Confidence 832 245777777777778899999553444 332 222111 00000 001112233345667778888
Q ss_pred eeeecCC--CCCccceEEEEEcCCCCcEEEEEeC-CCc-------EEEEecCCCCCCcccccCCCCCCcccccccCcccc
Q 005506 205 KRSLADP--PKQTLSLKSCDISSTRPHLLLVGGS-DAF-------ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 274 (693)
Q Consensus 205 ~~~l~~~--~~~~~~v~sl~~sp~~~~~Latgs~-Dg~-------IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (693)
....... ..+...|..++++++ + .++.|.. .|- |-+++... .+..+.. +....
T Consensus 150 ll~q~~Lp~~~~~lSiRHLa~~~~-G-~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~---p~~~~---------- 212 (305)
T PF07433_consen 150 LLEQVELPPDLHQLSIRHLAVDGD-G-TVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPA---PEEQW---------- 212 (305)
T ss_pred eeeeeecCccccccceeeEEecCC-C-cEEEEEecCCCCCccCCeEEEEcCCC--cceeccC---ChHHH----------
Confidence 7666555 447788999999997 4 3444432 211 22222211 1111100 00000
Q ss_pred CCCCccceEEEEEcCCCCEEEEEec-CCcEEEEECCCCC
Q 005506 275 HGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAG 312 (693)
Q Consensus 275 ~~~~~~~V~~v~fspdg~~L~sgs~-Dg~V~lwdl~~~~ 312 (693)
..-.+ .|-+|+++++|.++++++- .+.+.+||..++.
T Consensus 213 ~~l~~-Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~ 250 (305)
T PF07433_consen 213 RRLNG-YIGSIAADRDGRLIAVTSPRGGRVAVWDAATGR 250 (305)
T ss_pred HhhCC-ceEEEEEeCCCCEEEEECCCCCEEEEEECCCCC
Confidence 01112 5899999999998877776 7899999999965
No 378
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.75 E-value=0.0067 Score=61.65 Aligned_cols=189 Identities=14% Similarity=0.158 Sum_probs=115.3
Q ss_pred EEEEEEC-CCCCEEEEEeCCCcEEEEECCCCcEEEEecc---C-CCcceEEEEEeeCCCCCEEEEEeCC--------CcE
Q 005506 53 VNAISWN-SKGSLLISGSDDTHINVWSYSSRKLLHSIET---G-HSANVFCTKFVPETSDELVVSGAGD--------AEV 119 (693)
Q Consensus 53 V~~l~~s-~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~---~-h~~~I~sv~f~p~~~~~~l~sgs~D--------g~V 119 (693)
...+.+. ++|.++ .+... .+.++|+.+++....... . ......++++.|+ |++.++.... |.|
T Consensus 42 ~~G~~~~~~~g~l~-v~~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~--G~ly~t~~~~~~~~~~~~g~v 117 (246)
T PF08450_consen 42 PNGMAFDRPDGRLY-VADSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPD--GNLYVTDSGGGGASGIDPGSV 117 (246)
T ss_dssp EEEEEEECTTSEEE-EEETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TT--S-EEEEEECCBCTTCGGSEEE
T ss_pred CceEEEEccCCEEE-EEEcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCC--CCEEEEecCCCccccccccce
Confidence 6777787 565544 44454 466669988855443321 1 3467889999998 6777776654 345
Q ss_pred EEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEe
Q 005506 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (693)
Q Consensus 120 ~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~ 199 (693)
..++.. . + +......-.....|+|+|++..++++-+..+.|..+++...... .....++.+
T Consensus 118 ~~~~~~-~----------~-~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~-------~~~~~~~~~ 178 (246)
T PF08450_consen 118 YRIDPD-G----------K-VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGE-------LSNRRVFID 178 (246)
T ss_dssp EEEETT-S----------E-EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCC-------EEEEEEEEE
T ss_pred EEECCC-C----------e-EEEEecCcccccceEECCcchheeecccccceeEEEeccccccc-------eeeeeeEEE
Confidence 556655 1 1 22233345667899999966667778888899999998754310 001122222
Q ss_pred ccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCc
Q 005506 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (693)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (693)
+... ....-.+++.++ +++.++....+.|.++|.. ++.+..+..+ .
T Consensus 179 ~~~~-----------~g~pDG~~vD~~-G~l~va~~~~~~I~~~~p~-G~~~~~i~~p---------------------~ 224 (246)
T PF08450_consen 179 FPGG-----------PGYPDGLAVDSD-GNLWVADWGGGRIVVFDPD-GKLLREIELP---------------------V 224 (246)
T ss_dssp -SSS-----------SCEEEEEEEBTT-S-EEEEEETTTEEEEEETT-SCEEEEEE-S---------------------S
T ss_pred cCCC-----------CcCCCcceEcCC-CCEEEEEcCCCEEEEECCC-ccEEEEEcCC---------------------C
Confidence 2221 123667899996 6788888889999999987 5433322110 0
Q ss_pred cceEEEEEc-CCCCEEEEEe
Q 005506 280 LHLTHVTFS-PNGEEVLLSY 298 (693)
Q Consensus 280 ~~V~~v~fs-pdg~~L~sgs 298 (693)
..+++++|. ++.+.|++.+
T Consensus 225 ~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 225 PRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp SSEEEEEEESTTSSEEEEEE
T ss_pred CCEEEEEEECCCCCEEEEEe
Confidence 148999994 7777776554
No 379
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.74 E-value=0.0051 Score=67.68 Aligned_cols=201 Identities=11% Similarity=0.098 Sum_probs=112.6
Q ss_pred cEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCC-EEEEEeC---CCcEEEEEcCCCCCCCCCCCCCCCceeeccCCC
Q 005506 73 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE-LVVSGAG---DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR 148 (693)
Q Consensus 73 ~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~-~l~sgs~---Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~ 148 (693)
.|.+-|.+... .+.+..+ +.+....|+|+ ++ +++..+. +..|.++|+..+. ...+.....
T Consensus 170 ~l~~~d~dg~~-~~~~~~~--~~~~~p~wSpD--G~~~i~y~s~~~~~~~Iyv~dl~tg~-----------~~~lt~~~g 233 (419)
T PRK04043 170 NIVLADYTLTY-QKVIVKG--GLNIFPKWANK--EQTAFYYTSYGERKPTLYKYNLYTGK-----------KEKIASSQG 233 (419)
T ss_pred eEEEECCCCCc-eeEEccC--CCeEeEEECCC--CCcEEEEEEccCCCCEEEEEECCCCc-----------EEEEecCCC
Confidence 45555654433 3334223 37889999999 45 3554333 3468888887542 122222445
Q ss_pred CeEEEEEecCCCcEEEEEeCCC--cEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCC
Q 005506 149 RVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST 226 (693)
Q Consensus 149 ~V~~la~sp~~~~~l~Sgs~Dg--~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~ 226 (693)
.+....|+|++..++++.+.+| .|.++|+..+. ...+...+. ......|+|+
T Consensus 234 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~-----------------------~~~LT~~~~---~d~~p~~SPD 287 (419)
T PRK04043 234 MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT-----------------------LTQITNYPG---IDVNGNFVED 287 (419)
T ss_pred cEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc-----------------------EEEcccCCC---ccCccEECCC
Confidence 5667789997666776766554 46666665443 111211111 1223479998
Q ss_pred CCcEEEEEeCCC--cEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecC----
Q 005506 227 RPHLLLVGGSDA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---- 300 (693)
Q Consensus 227 ~~~~Latgs~Dg--~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~D---- 300 (693)
+..++.+....+ .|+++|+..+.... + ++ .+. ....|||+|++|+.....
T Consensus 288 G~~I~F~Sdr~g~~~Iy~~dl~~g~~~r-----------l-t~-------~g~-----~~~~~SPDG~~Ia~~~~~~~~~ 343 (419)
T PRK04043 288 DKRIVFVSDRLGYPNIFMKKLNSGSVEQ-----------V-VF-------HGK-----NNSSVSTYKNYIVYSSRETNNE 343 (419)
T ss_pred CCEEEEEECCCCCceEEEEECCCCCeEe-----------C-cc-------CCC-----cCceECCCCCEEEEEEcCCCcc
Confidence 544444444444 56667776543210 0 00 011 124899999998876653
Q ss_pred -----CcEEEEECCCCCcceEEeecCCCceeEEeccCCCcccccCC
Q 005506 301 -----EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPP 341 (693)
Q Consensus 301 -----g~V~lwdl~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~ 341 (693)
..|++.|+.++....+.. ........|+|+...+.+...
T Consensus 344 ~~~~~~~I~v~d~~~g~~~~LT~--~~~~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 344 FGKNTFNLYLISTNSDYIRRLTA--NGVNQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred cCCCCcEEEEEECCCCCeEECCC--CCCcCCeEECCCCCEEEEEEc
Confidence 378999998865332222 233445788998887766543
No 380
>PLN02789 farnesyltranstransferase
Probab=97.72 E-value=0.00019 Score=75.62 Aligned_cols=93 Identities=12% Similarity=0.069 Sum_probs=83.2
Q ss_pred cCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhc
Q 005506 376 EGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLC 455 (693)
Q Consensus 376 ~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~KA~~r~a~al~~l~ 455 (693)
.+. +..|+..++++|+..|.. ...+.+|+.++.+++. ++.+|+..+.++++.+|++..+++.|+.++..++
T Consensus 50 ~e~-serAL~lt~~aI~lnP~~------ytaW~~R~~iL~~L~~--~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 50 DER-SPRALDLTADVIRLNPGN------YTVWHFRRLCLEALDA--DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred CCC-CHHHHHHHHHHHHHCchh------HHHHHHHHHHHHHcch--hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcC
Confidence 455 999999999999999988 7899999999988642 4789999999999999999999999999999999
Q ss_pred cH--HHHHHHHHHHcccCCCCchh
Q 005506 456 KY--KEALDFAIAAQCLDPSNSVM 477 (693)
Q Consensus 456 ~~--~eA~~~~~~~~~~~p~~~~~ 477 (693)
+. ++++++++++++++|.|..+
T Consensus 121 ~~~~~~el~~~~kal~~dpkNy~A 144 (320)
T PLN02789 121 PDAANKELEFTRKILSLDAKNYHA 144 (320)
T ss_pred chhhHHHHHHHHHHHHhCcccHHH
Confidence 74 78899999999999998654
No 381
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.00037 Score=73.69 Aligned_cols=117 Identities=12% Similarity=0.066 Sum_probs=81.1
Q ss_pred hhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcc
Q 005506 363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR 442 (693)
Q Consensus 363 a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~K 442 (693)
...+--.|.++.+-.+ -..||+.|..||+.+|.+ ...+...+.+|--++- +.=||--..+|+++-|++.+
T Consensus 364 ~~aWTLmGHEyvEmKN-t~AAi~sYRrAvdi~p~D------yRAWYGLGQaYeim~M---h~YaLyYfqkA~~~kPnDsR 433 (559)
T KOG1155|consen 364 LSAWTLMGHEYVEMKN-THAAIESYRRAVDINPRD------YRAWYGLGQAYEIMKM---HFYALYYFQKALELKPNDSR 433 (559)
T ss_pred hHHHHHhhHHHHHhcc-cHHHHHHHHHHHhcCchh------HHHHhhhhHHHHHhcc---hHHHHHHHHHHHhcCCCchH
Confidence 3444556666666666 667888888888877765 4455556666644433 44477788888888888888
Q ss_pred hhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHHHHHHHH
Q 005506 443 AHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIA 489 (693)
Q Consensus 443 A~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l~~~i~ 489 (693)
-+--+|+||.+|++.+||++||+.++.....+..+--.+.++.++++
T Consensus 434 lw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~ 480 (559)
T KOG1155|consen 434 LWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELK 480 (559)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 88888888888888888888888888776665554444555555443
No 382
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.71 E-value=0.00039 Score=68.78 Aligned_cols=112 Identities=12% Similarity=0.034 Sum_probs=97.7
Q ss_pred cchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCC
Q 005506 360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSS 439 (693)
Q Consensus 360 ~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~ 439 (693)
+.....+..+|...+..|+ |..|+....++....|++ ...|+-++++|.+++. +..|-....+|++|.|+
T Consensus 97 ~~d~~ll~~~gk~~~~~g~-~~~A~~~~rkA~~l~p~d------~~~~~~lgaaldq~Gr---~~~Ar~ay~qAl~L~~~ 166 (257)
T COG5010 97 PKDRELLAAQGKNQIRNGN-FGEAVSVLRKAARLAPTD------WEAWNLLGAALDQLGR---FDEARRAYRQALELAPN 166 (257)
T ss_pred cccHHHHHHHHHHHHHhcc-hHHHHHHHHHHhccCCCC------hhhhhHHHHHHHHccC---hhHHHHHHHHHHHhccC
Confidence 3444566678999999999 999999999999999888 7889999999999654 99999999999999999
Q ss_pred CcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHH
Q 005506 440 SFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKV 481 (693)
Q Consensus 440 ~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~ 481 (693)
.++++-.++--|+--|+++.|...+..+...-+.+..+.+-+
T Consensus 167 ~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NL 208 (257)
T COG5010 167 EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNL 208 (257)
T ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 999999999999999999999999999988777776654433
No 383
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.70 E-value=0.04 Score=60.47 Aligned_cols=48 Identities=29% Similarity=0.401 Sum_probs=38.0
Q ss_pred cEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcC
Q 005506 73 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (693)
Q Consensus 73 ~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~ 125 (693)
.|.||+. .|+.+.++.-.+ +.|.++.|..+ ..|+....||+++++|+.
T Consensus 62 ~I~iys~-sG~ll~~i~w~~-~~iv~~~wt~~---e~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDS-GRIVGMGWTDD---EELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEEECC-CCCEeEEEEECC-CCEEEEEECCC---CeEEEEEcCCEEEEEeCC
Confidence 4999996 467777764444 89999999876 566677799999999985
No 384
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.69 E-value=0.00027 Score=84.11 Aligned_cols=106 Identities=8% Similarity=-0.067 Sum_probs=94.4
Q ss_pred hhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCc
Q 005506 362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSF 441 (693)
Q Consensus 362 ~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~ 441 (693)
.+..+...|......|+ +.+|+..|.++|+..|.. ..++.+.|.++++. |++.+|+.-+.++++++|++.
T Consensus 48 ~a~~~~~lA~~~~~~g~-~~~A~~~~~~al~~~P~~------~~a~~~la~~l~~~---g~~~eA~~~l~~~l~~~P~~~ 117 (765)
T PRK10049 48 PARGYAAVAVAYRNLKQ-WQNSLTLWQKALSLEPQN------DDYQRGLILTLADA---GQYDEALVKAKQLVSGAPDKA 117 (765)
T ss_pred CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHC---CCHHHHHHHHHHHHHhCCCCH
Confidence 34456677788889999 999999999999998877 56777889999885 459999999999999999999
Q ss_pred chhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhH
Q 005506 442 RAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA 478 (693)
Q Consensus 442 KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~ 478 (693)
. ++.+|.++...|++++|+..+++++++.|++..+.
T Consensus 118 ~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~ 153 (765)
T PRK10049 118 N-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYP 153 (765)
T ss_pred H-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 9 99999999999999999999999999999997654
No 385
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.69 E-value=6.8e-05 Score=82.47 Aligned_cols=112 Identities=13% Similarity=0.000 Sum_probs=85.1
Q ss_pred CcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCC
Q 005506 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS 438 (693)
Q Consensus 359 ~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p 438 (693)
.+..-+.+...||-+--+++ ++.||+++.+||++.|.. +....|.. -=+. +..+++.|..-..+||.+||
T Consensus 417 ~~~sPesWca~GNcfSLQkd-h~~Aik~f~RAiQldp~f---aYayTLlG---hE~~---~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 417 DPNSPESWCALGNCFSLQKD-HDTAIKCFKRAIQLDPRF---AYAYTLLG---HESI---ATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred CCCCcHHHHHhcchhhhhhH-HHHHHHHHHHhhccCCcc---chhhhhcC---Chhh---hhHHHHhHHHHHHhhhcCCc
Confidence 33344667777887766777 999999999999999865 11111111 1111 13458889999999999999
Q ss_pred CCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHH
Q 005506 439 SSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEK 480 (693)
Q Consensus 439 ~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~ 480 (693)
.+..|+|-+|..|++.++++.|.-.|++|+.++|.|..+.-.
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~ 528 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCH 528 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhh
Confidence 999999999999999999999999999999999998765433
No 386
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.68 E-value=0.00036 Score=67.77 Aligned_cols=106 Identities=16% Similarity=0.036 Sum_probs=89.5
Q ss_pred chhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCC
Q 005506 361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS 440 (693)
Q Consensus 361 ~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~ 440 (693)
..+....+.|-.++..|+ +..|.+-..+||+..|.. ...|.-||..|.+++. ...|-+...+||.++|++
T Consensus 33 ~aa~arlqLal~YL~~gd-~~~A~~nlekAL~~DPs~------~~a~~~~A~~Yq~~Ge---~~~A~e~YrkAlsl~p~~ 102 (250)
T COG3063 33 EAAKARLQLALGYLQQGD-YAQAKKNLEKALEHDPSY------YLAHLVRAHYYQKLGE---NDLADESYRKALSLAPNN 102 (250)
T ss_pred HHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHcCC---hhhHHHHHHHHHhcCCCc
Confidence 345566778889999999 999999999999999887 6778899999999755 889999999999999999
Q ss_pred cchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchh
Q 005506 441 FRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 477 (693)
Q Consensus 441 ~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~ 477 (693)
...+-..+-=|.+.|++++|+..|.+++. +|.+.+.
T Consensus 103 GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-~P~Y~~~ 138 (250)
T COG3063 103 GDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAYGEP 138 (250)
T ss_pred cchhhhhhHHHHhCCChHHHHHHHHHHHh-CCCCCCc
Confidence 99888888888888888888888888763 4554433
No 387
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.67 E-value=0.00024 Score=88.53 Aligned_cols=116 Identities=18% Similarity=0.129 Sum_probs=93.1
Q ss_pred CcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCc-c-------hhhhhhhHHHHHHhccccCcHHHHHHhH
Q 005506 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPM-L-------RHECLCIRAALLLKRKWKNDAQMAIRDC 430 (693)
Q Consensus 359 ~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~-~-------~~~~~~NRA~~~lk~~~~~d~~~Al~Dc 430 (693)
.+.....+...|.-+++.|+ |.+|+..|.++++..|...... . +.-++.+++.++++. |++.+|+.-+
T Consensus 299 ~P~~~~a~~~Lg~~~~~~g~-~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~---g~~~eA~~~~ 374 (1157)
T PRK11447 299 NPKDSEALGALGQAYSQQGD-RARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKA---NNLAQAERLY 374 (1157)
T ss_pred CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHC---CCHHHHHHHH
Confidence 44455666777888888999 9999999999999887652211 0 011234556677775 5599999999
Q ss_pred hHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhH
Q 005506 431 YNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA 478 (693)
Q Consensus 431 ~~Al~l~p~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~ 478 (693)
.+|++++|++..|++.+|.++..+|++++|++.|+++++++|++..+.
T Consensus 375 ~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~ 422 (1157)
T PRK11447 375 QQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAV 422 (1157)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 999999999999999999999999999999999999999999987654
No 388
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.65 E-value=0.0044 Score=62.61 Aligned_cols=231 Identities=14% Similarity=0.131 Sum_probs=117.6
Q ss_pred eEEeccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEE
Q 005506 43 ERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 121 (693)
Q Consensus 43 ~~~l~gH~~~V~~l~~s~~g-~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~v 121 (693)
.+.|.+-...|..|+|+|+. +++++....+.|...+. +|+.+..+.-.-.+..-.|++..+ +.++++--.++.+.+
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~--~~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGN--GRYVLSEERDQRLYI 90 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-ST--TEEEEEETTTTEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECC--CEEEEEEcCCCcEEE
Confidence 34566767779999999975 56666777788888886 578888774444466889999866 566666556899999
Q ss_pred EEcCCCCCCCCCCCCCCC--ceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEe
Q 005506 122 FNLSRFSGRGLDDNAITP--SALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (693)
Q Consensus 122 wdl~~~~~~~~~~~~~~~--~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~ 199 (693)
+++........ ...... +.....+...+-.|+|.|....+| .+-+..-..+|.++..... . ...+...
T Consensus 91 ~~~~~~~~~~~-~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~-v~kE~~P~~l~~~~~~~~~-------~-~~~~~~~ 160 (248)
T PF06977_consen 91 FTIDDDTTSLD-RADVQKISLGFPNKGNKGFEGLAYDPKTNRLF-VAKERKPKRLYEVNGFPGG-------F-DLFVSDD 160 (248)
T ss_dssp EEE----TT---EEEEEEEE---S---SS--EEEEEETTTTEEE-EEEESSSEEEEEEESTT-S-------S---EEEE-
T ss_pred EEEeccccccc-hhhceEEecccccCCCcceEEEEEcCCCCEEE-EEeCCCChhhEEEccccCc-------c-ceeeccc
Confidence 99954321110 000000 011123556789999999555555 5667667777776541100 0 0001100
Q ss_pred ccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCc
Q 005506 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279 (693)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (693)
. .+.........+..++++|..+++++.+.....|..+| +.++++..+..... .+. -.+.-
T Consensus 161 ~------~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g----------~~g--l~~~~ 221 (248)
T PF06977_consen 161 Q------DLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRG----------FHG--LSKDI 221 (248)
T ss_dssp H------HHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STT----------GGG---SS--
T ss_pred c------ccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCc----------ccC--ccccc
Confidence 0 00001122335789999999889999999999999999 55544332211000 000 00111
Q ss_pred cceEEEEEcCCCCEEEEEecCCcEEEE
Q 005506 280 LHLTHVTFSPNGEEVLLSYSGEHVYLM 306 (693)
Q Consensus 280 ~~V~~v~fspdg~~L~sgs~Dg~V~lw 306 (693)
...-.|+|.++|+..+ .+.-+..|+|
T Consensus 222 ~QpEGIa~d~~G~LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 222 PQPEGIAFDPDGNLYI-VSEPNLFYRF 247 (248)
T ss_dssp -SEEEEEE-TT--EEE-EETTTEEEEE
T ss_pred CCccEEEECCCCCEEE-EcCCceEEEe
Confidence 1357899999996544 4465566665
No 389
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.65 E-value=0.00015 Score=67.86 Aligned_cols=101 Identities=17% Similarity=0.119 Sum_probs=76.0
Q ss_pred hhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhcccc-------CcHHHHHHhHhHhhccCCCCcchhhhHHHHHH
Q 005506 380 PYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWK-------NDAQMAIRDCYNARRIDSSSFRAHLYMSEALE 452 (693)
Q Consensus 380 y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~-------~d~~~Al~Dc~~Al~l~p~~~KA~~r~a~al~ 452 (693)
|+.|.+.|..+...+|.+ +.-+.|=+.+++.+... .=+.+|+.-..+||.|+|+...|++..|.||.
T Consensus 7 FE~ark~aea~y~~nP~D------adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~t 80 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLD------ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYT 80 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-------HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHh------HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 677888888888888876 66666666666655331 11556888889999999999999999999999
Q ss_pred Hhcc-----------HHHHHHHHHHHcccCCCCchhHHHHHHHHH
Q 005506 453 QLCK-----------YKEALDFAIAAQCLDPSNSVMAEKVENIKK 486 (693)
Q Consensus 453 ~l~~-----------~~eA~~~~~~~~~~~p~~~~~~~~~~~l~~ 486 (693)
.++. |++|.++|+++...+|+|....+.|+...+
T Consensus 81 s~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 81 SLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAK 125 (186)
T ss_dssp HHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHT
T ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence 8885 889999999999999999888877766654
No 390
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.64 E-value=0.00017 Score=80.50 Aligned_cols=103 Identities=22% Similarity=0.131 Sum_probs=86.0
Q ss_pred hhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHH--hHhHhhccCCCC
Q 005506 363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIR--DCYNARRIDSSS 440 (693)
Q Consensus 363 a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~--Dc~~Al~l~p~~ 440 (693)
+..+...|-.....|+ +.+|.++|..|+...|+. .....-.|.++++++. ...|.. -...|+++||.+
T Consensus 684 ~~~~~~~G~~~~~~~~-~~EA~~af~~Al~ldP~h------v~s~~Ala~~lle~G~---~~la~~~~~L~dalr~dp~n 753 (799)
T KOG4162|consen 684 ASVYYLRGLLLEVKGQ-LEEAKEAFLVALALDPDH------VPSMTALAELLLELGS---PRLAEKRSLLSDALRLDPLN 753 (799)
T ss_pred HHHHHHhhHHHHHHHh-hHHHHHHHHHHHhcCCCC------cHHHHHHHHHHHHhCC---cchHHHHHHHHHHHhhCCCC
Confidence 3445666777778888 999999999999999876 3455566899999764 445544 667789999999
Q ss_pred cchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCc
Q 005506 441 FRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS 475 (693)
Q Consensus 441 ~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~ 475 (693)
.+|+|.+|..+.++|+.++|.+||+++++++++++
T Consensus 754 ~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 754 HEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 99999999999999999999999999999998875
No 391
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.62 E-value=0.0023 Score=71.89 Aligned_cols=191 Identities=15% Similarity=0.189 Sum_probs=121.9
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCC
Q 005506 50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 129 (693)
Q Consensus 50 ~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~ 129 (693)
.+.+.|++++ ++.|+-|.-+|.|++.+.... . .+. ..|... +..|.+++||+.||+|.|-.+-+..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~-~~~s~~--------~~~Gey~asCS~DGkv~I~sl~~~~- 104 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTN-FDHSSS--------ILEGEYVASCSDDGKVVIGSLFTDD- 104 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccc-cccccc--------ccCCceEEEecCCCcEEEeeccCCc-
Confidence 4567777775 679999999999999997643 3 322 245443 3348999999999999999887642
Q ss_pred CCCCCCCCCCceeeccCCCCeEEEEEecC----CCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCce
Q 005506 130 RGLDDNAITPSALYQCHTRRVKKLAVEVG----NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (693)
Q Consensus 130 ~~~~~~~~~~~~~~~~h~~~V~~la~sp~----~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (693)
...++. ...++++|+++|+ ....|++||.-| +.++.-+--...
T Consensus 105 ---------~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk---------------------- 151 (846)
T KOG2066|consen 105 ---------EITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK---------------------- 151 (846)
T ss_pred ---------cceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc----------------------
Confidence 222232 4578999999995 356788999988 767653321110
Q ss_pred eeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEE
Q 005506 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV 285 (693)
Q Consensus 206 ~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v 285 (693)
..+ ......++|.++.|.. +++|-++.+| |++||+...+.+..++.+...+ ........+
T Consensus 152 ~~v-~l~~~eG~I~~i~W~g---~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~---------------R~e~fpphl 211 (846)
T KOG2066|consen 152 DSV-VLSEGEGPIHSIKWRG---NLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSV---------------RPELFPPHL 211 (846)
T ss_pred cce-eeecCccceEEEEecC---cEEEEecCCC-cEEEeccccceeeccCCCCCCC---------------CcccCCCce
Confidence 000 1112356899999974 5777776555 8999999877665543222110 111123457
Q ss_pred EEcCCCCEEEEEecCCcEEEEECC
Q 005506 286 TFSPNGEEVLLSYSGEHVYLMDVN 309 (693)
Q Consensus 286 ~fspdg~~L~sgs~Dg~V~lwdl~ 309 (693)
.|.++.+ |+.| ...+|.|..++
T Consensus 212 ~W~~~~~-LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 212 HWQDEDR-LVIG-WGDSVKICSIK 233 (846)
T ss_pred EecCCCe-EEEe-cCCeEEEEEEe
Confidence 7777665 3334 34477777777
No 392
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.0024 Score=66.30 Aligned_cols=97 Identities=14% Similarity=0.197 Sum_probs=79.4
Q ss_pred EEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEE
Q 005506 74 INVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKL 153 (693)
Q Consensus 74 I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 153 (693)
|++.+..+.+... +..+|...|.+++|+|.. ..++..++.+.+|.|.|+.+. ..+..+..| ..+.++
T Consensus 175 v~~l~~~~fkssq-~lp~~g~~IrdlafSp~~-~GLl~~asl~nkiki~dlet~----------~~vssy~a~-~~~wSC 241 (463)
T KOG1645|consen 175 VQKLESHDFKSSQ-ILPGEGSFIRDLAFSPFN-EGLLGLASLGNKIKIMDLETS----------CVVSSYIAY-NQIWSC 241 (463)
T ss_pred eEEeccCCcchhh-cccccchhhhhhccCccc-cceeeeeccCceEEEEecccc----------eeeeheecc-CCceee
Confidence 5556655555555 337888999999999995 448999999999999999975 346666666 789999
Q ss_pred EEecCCCcEEEEEeCCCcEEEEeCCCCCCC
Q 005506 154 AVEVGNPHVVWSASEDGTLRQHDFRQGSSC 183 (693)
Q Consensus 154 a~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~ 183 (693)
+|.-++.++|..|-..|.|.+||+|..+..
T Consensus 242 ~wDlde~h~IYaGl~nG~VlvyD~R~~~~~ 271 (463)
T KOG1645|consen 242 CWDLDERHVIYAGLQNGMVLVYDMRQPEGP 271 (463)
T ss_pred eeccCCcceeEEeccCceEEEEEccCCCch
Confidence 999988999999999999999999987643
No 393
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.61 E-value=0.025 Score=62.27 Aligned_cols=147 Identities=11% Similarity=0.103 Sum_probs=78.3
Q ss_pred EEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEE-
Q 005506 44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF- 122 (693)
Q Consensus 44 ~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vw- 122 (693)
+.+....-.+..|.++|+|+.++.+ .||...|+.....+... .+.-....|.+. ..+|+-...++|.|+
T Consensus 26 k~lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~------~G~g~~~vw~~~---n~yAv~~~~~~I~I~k 95 (443)
T PF04053_consen 26 KELGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA------FGSGLSFVWSSR---NRYAVLESSSTIKIYK 95 (443)
T ss_dssp EEEEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE------EEE-SEEEE-TS---SEEEEE-TTS-EEEEE
T ss_pred ccCCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc------cCceeEEEEecC---ccEEEEECCCeEEEEE
Confidence 3444455668899999999999885 56788888844333221 234557889885 457777778899996
Q ss_pred EcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccC
Q 005506 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (693)
Q Consensus 123 dl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~ 202 (693)
++.. .....+.. ...+..|-. +.+|...+. +.|.+||+.+.+.. -.
T Consensus 96 n~~~-----------~~~k~i~~-~~~~~~If~----G~LL~~~~~-~~i~~yDw~~~~~i--------------~~--- 141 (443)
T PF04053_consen 96 NFKN-----------EVVKSIKL-PFSVEKIFG----GNLLGVKSS-DFICFYDWETGKLI--------------RR--- 141 (443)
T ss_dssp TTEE------------TT------SS-EEEEE-----SSSEEEEET-TEEEEE-TTT--EE--------------EE---
T ss_pred cCcc-----------ccceEEcC-CcccceEEc----CcEEEEECC-CCEEEEEhhHccee--------------eE---
Confidence 4432 11222221 223444432 556655554 48999999887522 10
Q ss_pred CceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecC
Q 005506 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR 246 (693)
Q Consensus 203 ~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r 246 (693)
+ ....|+.+.|+++ +.+++..+.+ .+.|++..
T Consensus 142 -----i-----~v~~vk~V~Ws~~-g~~val~t~~-~i~il~~~ 173 (443)
T PF04053_consen 142 -----I-----DVSAVKYVIWSDD-GELVALVTKD-SIYILKYN 173 (443)
T ss_dssp -----E-----SS-E-EEEEE-TT-SSEEEEE-S--SEEEEEE-
T ss_pred -----E-----ecCCCcEEEEECC-CCEEEEEeCC-eEEEEEec
Confidence 0 0123789999997 6788777654 67777754
No 394
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.60 E-value=3.4e-05 Score=52.22 Aligned_cols=32 Identities=16% Similarity=0.168 Sum_probs=30.6
Q ss_pred HhHhhccCCCCcchhhhHHHHHHHhccHHHHH
Q 005506 430 CYNARRIDSSSFRAHLYMSEALEQLCKYKEAL 461 (693)
Q Consensus 430 c~~Al~l~p~~~KA~~r~a~al~~l~~~~eA~ 461 (693)
|.+||+++|+++.||+.+|.+|..+|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 57899999999999999999999999999996
No 395
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00029 Score=74.50 Aligned_cols=110 Identities=16% Similarity=0.077 Sum_probs=94.2
Q ss_pred HHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHH
Q 005506 369 IARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMS 448 (693)
Q Consensus 369 ~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~KA~~r~a 448 (693)
.||-+--.++ .+.||..+..|++++|.. ...+.=-+-=|+.++. ..+|+.-..+|++++|.+.+|+|-+|
T Consensus 336 IaNYYSlr~e-HEKAv~YFkRALkLNp~~------~~aWTLmGHEyvEmKN---t~AAi~sYRrAvdi~p~DyRAWYGLG 405 (559)
T KOG1155|consen 336 IANYYSLRSE-HEKAVMYFKRALKLNPKY------LSAWTLMGHEYVEMKN---THAAIESYRRAVDINPRDYRAWYGLG 405 (559)
T ss_pred ehhHHHHHHh-HHHHHHHHHHHHhcCcch------hHHHHHhhHHHHHhcc---cHHHHHHHHHHHhcCchhHHHHhhhh
Confidence 5666666667 889999999999999886 5666667777888776 89999999999999999999999999
Q ss_pred HHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHHHHHHH
Q 005506 449 EALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHI 488 (693)
Q Consensus 449 ~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l~~~i 488 (693)
|||.-|+...=|+=++++|+++-|.+.-+-..+-++-+++
T Consensus 406 QaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl 445 (559)
T KOG1155|consen 406 QAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKL 445 (559)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh
Confidence 9999999999999999999999999987655555555544
No 396
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.58 E-value=0.00025 Score=77.23 Aligned_cols=106 Identities=16% Similarity=0.087 Sum_probs=82.7
Q ss_pred hhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcch
Q 005506 364 RMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRA 443 (693)
Q Consensus 364 ~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~KA 443 (693)
..+...+.-+.+.|+ |.+|++.|.++++..+..... ....+|.+.|..+++. |++.+|+..+.++++++|++..+
T Consensus 142 ~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~p~~~~~ 216 (389)
T PRK11788 142 GALQQLLEIYQQEKD-WQKAIDVAERLEKLGGDSLRV-EIAHFYCELAQQALAR---GDLDAARALLKKALAADPQCVRA 216 (389)
T ss_pred HHHHHHHHHHHHhch-HHHHHHHHHHHHHhcCCcchH-HHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHhHCcCCHHH
Confidence 334455566677788 888888888888766543111 1234677888888885 45999999999999999999999
Q ss_pred hhhHHHHHHHhccHHHHHHHHHHHcccCCCC
Q 005506 444 HLYMSEALEQLCKYKEALDFAIAAQCLDPSN 474 (693)
Q Consensus 444 ~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~ 474 (693)
++.+|.++..+|++++|++.++++...+|.+
T Consensus 217 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 217 SILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 9999999999999999999999999888875
No 397
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.56 E-value=0.00042 Score=83.38 Aligned_cols=107 Identities=20% Similarity=0.078 Sum_probs=90.9
Q ss_pred chhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCC
Q 005506 361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS 440 (693)
Q Consensus 361 ~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~ 440 (693)
..+..+...|...+..|+ |..|+..|.++++..|.. ...+...|.+++.. |++.+|+..+.++++.+|.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~-~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~---~~~~~A~~~~~~~~~~~~~~ 192 (899)
T TIGR02917 123 GAAELLALRGLAYLGLGQ-LELAQKSYEQALAIDPRS------LYAKLGLAQLALAE---NRFDEARALIDEVLTADPGN 192 (899)
T ss_pred hhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCC------hhhHHHHHHHHHHC---CCHHHHHHHHHHHHHhCCCC
Confidence 345667778888889999 999999999999988765 45677888888885 45999999999999999999
Q ss_pred cchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchh
Q 005506 441 FRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 477 (693)
Q Consensus 441 ~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~ 477 (693)
..+++.++.++..+|++++|.+.+++++.++|.+...
T Consensus 193 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 229 (899)
T TIGR02917 193 VDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAV 229 (899)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Confidence 9999999999999999999999999999999987543
No 398
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.56 E-value=0.00045 Score=74.08 Aligned_cols=74 Identities=12% Similarity=0.001 Sum_probs=63.5
Q ss_pred ccCcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhcc
Q 005506 357 ATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRI 436 (693)
Q Consensus 357 ~~~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l 436 (693)
...+..+..+...|..+++.|+ |++|+..|.+||++.|+. ...+..|.|+|.||.+++. +.+|+.+..+||++
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGr-yeEAIa~f~rALeL~Pd~---aeA~~A~yNLAcaya~LGr---~dEAla~LrrALel 141 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGR-VKDALAQFETALELNPNP---DEAQAAYYNKACCHAYREE---GKKAADCLRTALRD 141 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHh
Confidence 4567778889999999999999 999999999999999876 1112469999999999755 99999999999998
Q ss_pred C
Q 005506 437 D 437 (693)
Q Consensus 437 ~ 437 (693)
.
T Consensus 142 s 142 (453)
T PLN03098 142 Y 142 (453)
T ss_pred c
Confidence 3
No 399
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.51 E-value=0.0047 Score=68.54 Aligned_cols=123 Identities=16% Similarity=0.222 Sum_probs=88.1
Q ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCC
Q 005506 49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 128 (693)
Q Consensus 49 H~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~ 128 (693)
|...|.--++...+++|+.|+.-|.+.+|+-..++....-..+..+.+..+..++. +.++|.|+..|.|.|+-++...
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~--e~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSV--EYLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecch--hHhhhhhcCCceEEeehhhccC
Confidence 45556666677789999999999999999987765443322334445555666666 6888999999999999888632
Q ss_pred CCCCCCCCCCCce-eeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 005506 129 GRGLDDNAITPSA-LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (693)
Q Consensus 129 ~~~~~~~~~~~~~-~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~ 179 (693)
.... ..+. .-+.|..+|++++|++ ++..+.+|..-|+|.+..+..
T Consensus 110 p~~~-----~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 110 PRDL-----DYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CCcc-----eeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEech
Confidence 1110 0011 1123788999999999 678888999999999887776
No 400
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.50 E-value=0.0013 Score=66.39 Aligned_cols=110 Identities=15% Similarity=0.051 Sum_probs=88.1
Q ss_pred hhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhcc-----ccCcHHHHHHhHhHhhccCC
Q 005506 364 RMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRK-----WKNDAQMAIRDCYNARRIDS 438 (693)
Q Consensus 364 ~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~-----~~~d~~~Al~Dc~~Al~l~p 438 (693)
..+...|.-.++.++ |..|+..|.++++..|+.. .....+.+++.+|.+.. ..+++..|+....++++.+|
T Consensus 71 ~a~~~la~~~~~~~~-~~~A~~~~~~~l~~~p~~~---~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 146 (235)
T TIGR03302 71 QAQLDLAYAYYKSGD-YAEAIAAADRFIRLHPNHP---DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP 146 (235)
T ss_pred HHHHHHHHHHHhcCC-HHHHHHHHHHHHHHCcCCC---chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC
Confidence 345667888899999 9999999999999998652 11235678888887641 12568999999999999999
Q ss_pred CCcchh-----------------hhHHHHHHHhccHHHHHHHHHHHcccCCCCchh
Q 005506 439 SSFRAH-----------------LYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 477 (693)
Q Consensus 439 ~~~KA~-----------------~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~ 477 (693)
++..+. +.+|..++..|++.+|+..+++++...|+.+..
T Consensus 147 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 202 (235)
T TIGR03302 147 NSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPAT 202 (235)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcch
Confidence 986542 466888899999999999999999999986543
No 401
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.49 E-value=0.00029 Score=56.78 Aligned_cols=68 Identities=18% Similarity=0.082 Sum_probs=58.2
Q ss_pred HhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHH
Q 005506 371 RNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMS 448 (693)
Q Consensus 371 n~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~KA~~r~a 448 (693)
+-++..++ |..|++.+..+|...|.. +.++.++|.+|.+.+ ++.+|+.++.++|+++|++..+..-++
T Consensus 3 ~~~~~~~~-~~~A~~~~~~~l~~~p~~------~~~~~~~a~~~~~~g---~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 3 QIYLQQED-YEEALEVLERALELDPDD------PELWLQRARCLFQLG---RYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHhCCC-HHHHHHHHHHHHHhCccc------chhhHHHHHHHHHhc---cHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 34677888 999999999999999887 788999999999965 499999999999999998876654443
No 402
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.48 E-value=0.0011 Score=66.41 Aligned_cols=109 Identities=14% Similarity=0.007 Sum_probs=93.4
Q ss_pred hhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcc
Q 005506 363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR 442 (693)
Q Consensus 363 a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~K 442 (693)
+.++-+.+-.+++.|+ |..|...+.+-|+.+|.. ...+..+.-.+-+++.+ |||..|..-...+.+-.|.+.|
T Consensus 141 ~~~~Y~~A~~~~ksgd-y~~A~~~F~~fi~~YP~s---~~~~nA~yWLGe~~y~q---g~y~~Aa~~f~~~~k~~P~s~K 213 (262)
T COG1729 141 ATKLYNAALDLYKSGD-YAEAEQAFQAFIKKYPNS---TYTPNAYYWLGESLYAQ---GDYEDAAYIFARVVKDYPKSPK 213 (262)
T ss_pred hhHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCC---cccchhHHHHHHHHHhc---ccchHHHHHHHHHHHhCCCCCC
Confidence 3447888999999999 999999999999999876 33345566778899885 5599999988888888888877
Q ss_pred h---hhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhH
Q 005506 443 A---HLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA 478 (693)
Q Consensus 443 A---~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~ 478 (693)
| +|.+|.++..|++-++|...|+++.+.+|+...+.
T Consensus 214 ApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 214 APDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 5 99999999999999999999999999999986643
No 403
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.46 E-value=0.00028 Score=47.37 Aligned_cols=38 Identities=34% Similarity=0.688 Sum_probs=34.9
Q ss_pred ceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEE
Q 005506 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS 78 (693)
Q Consensus 41 ~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd 78 (693)
.+...+..|...|+++.|++.+.++++++.|+.|++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45677889999999999999999999999999999996
No 404
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.44 E-value=8.7e-05 Score=50.12 Aligned_cols=33 Identities=39% Similarity=0.481 Sum_probs=25.9
Q ss_pred chhhhHHHHHHHhccHHHHHHHHHHHcccCCCC
Q 005506 442 RAHLYMSEALEQLCKYKEALDFAIAAQCLDPSN 474 (693)
Q Consensus 442 KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~ 474 (693)
++|+++|.++..++++++|+++++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 578888888888888888888888888888863
No 405
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.42 E-value=0.00028 Score=71.14 Aligned_cols=66 Identities=23% Similarity=0.221 Sum_probs=57.6
Q ss_pred hhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCch
Q 005506 408 CIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (693)
Q Consensus 408 ~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~ 476 (693)
.+-+.-.++ .++|.+||.-.++||+|+|+++==|..||.||.+||.|+.|++++++++.+||.+..
T Consensus 85 K~eGN~~m~---~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ysk 150 (304)
T KOG0553|consen 85 KNEGNKLMK---NKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSK 150 (304)
T ss_pred HHHHHHHHH---hhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHH
Confidence 344444555 456999999999999999999999999999999999999999999999999998643
No 406
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.41 E-value=0.001 Score=54.72 Aligned_cols=69 Identities=29% Similarity=0.240 Sum_probs=62.5
Q ss_pred hhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchh
Q 005506 406 CLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 477 (693)
Q Consensus 406 ~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~ 477 (693)
++.++|.+++..+ ++..|+.-+.+++++.|.+..+++.+|.++..++++++|.+.++.++...|.+...
T Consensus 2 ~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 70 (100)
T cd00189 2 ALLNLGNLYYKLG---DYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKA 70 (100)
T ss_pred HHHHHHHHHHHHh---cHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhH
Confidence 4678899998854 49999999999999999999999999999999999999999999999999988643
No 407
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.41 E-value=0.038 Score=60.00 Aligned_cols=103 Identities=18% Similarity=0.238 Sum_probs=62.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCc
Q 005506 61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS 140 (693)
Q Consensus 61 ~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~ 140 (693)
++..++.++.++.|..+|..+++.+..... .+.+.+.-... +..++.+..++.|..||..++. .+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~p~v~---~~~v~v~~~~g~l~a~d~~tG~----------~~ 168 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKL--SSEVLSPPLVA---NGLVVVRTNDGRLTALDAATGE----------RL 168 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeecc--CceeecCCEEE---CCEEEEECCCCeEEEEEcCCCc----------ee
Confidence 356778888899999999999988766532 22333221111 3567777889999999998642 22
Q ss_pred eeeccCCCCe-----EEEEEecCCCcEEEEEeCCCcEEEEeCCCCC
Q 005506 141 ALYQCHTRRV-----KKLAVEVGNPHVVWSASEDGTLRQHDFRQGS 181 (693)
Q Consensus 141 ~~~~~h~~~V-----~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~ 181 (693)
..+......+ ....+. + ..++.+..+|.|..+|.++++
T Consensus 169 W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~ 211 (377)
T TIGR03300 169 WTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQTGQ 211 (377)
T ss_pred eEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEccCCC
Confidence 2222111110 011111 2 255677778888888887765
No 408
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.39 E-value=0.00067 Score=70.50 Aligned_cols=113 Identities=19% Similarity=0.169 Sum_probs=84.1
Q ss_pred chhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCC
Q 005506 361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS 440 (693)
Q Consensus 361 ~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~ 440 (693)
....-+...|....+.|+ +..|+..|.+||+..|++ ..+..+.+..++.. |++.++..-+....+..|.+
T Consensus 144 ~~~~~~~~~a~~~~~~G~-~~~A~~~~~~al~~~P~~------~~~~~~l~~~li~~---~~~~~~~~~l~~~~~~~~~~ 213 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGD-PDKALRDYRKALELDPDD------PDARNALAWLLIDM---GDYDEAREALKRLLKAAPDD 213 (280)
T ss_dssp T-HHHHHHHHHHHHHCCH-HHHHHHHHHHHHHH-TT-------HHHHHHHHHHHCTT---CHHHHHHHHHHHHHHH-HTS
T ss_pred CCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHC---CChHHHHHHHHHHHHHCcCH
Confidence 345567778888889999 999999999999999887 55666666666664 44776555555555556888
Q ss_pred cchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHH
Q 005506 441 FRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVEN 483 (693)
Q Consensus 441 ~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~ 483 (693)
+..+.-.|.+++.||++++|+..++++++..|.|..+...+..
T Consensus 214 ~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~ 256 (280)
T PF13429_consen 214 PDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYAD 256 (280)
T ss_dssp CCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccccccccccccccccccccccccccc
Confidence 8888889999999999999999999999999999776544433
No 409
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.39 E-value=0.00084 Score=73.27 Aligned_cols=75 Identities=15% Similarity=0.210 Sum_probs=63.3
Q ss_pred cCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCC
Q 005506 48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 127 (693)
Q Consensus 48 gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~ 127 (693)
.....|.|++++|+.+.|+.|+.||.|++||..++... + ....-.++.++|+|+ |.+|++|+..|.+.+||+..+
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~-~ka~~~P~~iaWHp~--gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--L-AKAEFIPTLIAWHPD--GAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--e-eeecccceEEEEcCC--CcEEEEEcCCceEEEEEeecC
Confidence 46778999999999999999999999999998765322 2 234456789999999 699999999999999999853
No 410
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.39 E-value=0.0012 Score=79.48 Aligned_cols=103 Identities=16% Similarity=0.051 Sum_probs=71.2
Q ss_pred hhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcch
Q 005506 364 RMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRA 443 (693)
Q Consensus 364 ~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~KA 443 (693)
......|.-++..|+ +..|+..|.++++..|+. ...+.+.+..|.+. |+ ..|+.-+.+++++.|++...
T Consensus 771 ~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~---~~-~~A~~~~~~~~~~~~~~~~~ 839 (899)
T TIGR02917 771 VLRTALAELYLAQKD-YDKAIKHYRTVVKKAPDN------AVVLNNLAWLYLEL---KD-PRALEYAEKALKLAPNIPAI 839 (899)
T ss_pred HHHHHHHHHHHHCcC-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhc---Cc-HHHHHHHHHHHhhCCCCcHH
Confidence 334444555566666 777777777777766654 55666777777664 33 45777777777777777777
Q ss_pred hhhHHHHHHHhccHHHHHHHHHHHcccCCCCchh
Q 005506 444 HLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 477 (693)
Q Consensus 444 ~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~ 477 (693)
+..+|.++..+|++++|++.++++++++|.+..+
T Consensus 840 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 873 (899)
T TIGR02917 840 LDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAI 873 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Confidence 7777777777778888888887777777776544
No 411
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.38 E-value=0.00022 Score=80.02 Aligned_cols=163 Identities=21% Similarity=0.249 Sum_probs=111.5
Q ss_pred EEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEE
Q 005506 84 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 163 (693)
Q Consensus 84 ~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l 163 (693)
...+| ..|...-+|++|+.. .+.|+.|+..|.|+++++..+ .-.....||...|+.|.-+-++..+|
T Consensus 1093 ~w~~f-rd~~~~fTc~afs~~--~~hL~vG~~~Geik~~nv~sG----------~~e~s~ncH~SavT~vePs~dgs~~L 1159 (1516)
T KOG1832|consen 1093 SWRSF-RDETALFTCIAFSGG--TNHLAVGSHAGEIKIFNVSSG----------SMEESVNCHQSAVTLVEPSVDGSTQL 1159 (1516)
T ss_pred cchhh-hccccceeeEEeecC--CceEEeeeccceEEEEEccCc----------cccccccccccccccccccCCcceee
Confidence 44455 578888999999988 589999999999999999976 33567789999999999888555555
Q ss_pred EEEeCCC-cEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCc-cceEEEEEcCCCCcEEEEEeCCCcEE
Q 005506 164 WSASEDG-TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQT-LSLKSCDISSTRPHLLLVGGSDAFAR 241 (693)
Q Consensus 164 ~Sgs~Dg-~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~-~~v~sl~~sp~~~~~Latgs~Dg~Ir 241 (693)
.+++... ..-+|++.+.-.. .|. ..-.++.|+.. ...-++|+.-..+.
T Consensus 1160 tsss~S~PlsaLW~~~s~~~~-----------------------------~Hsf~ed~~vkFsn~-~q~r~~gt~~d~a~ 1209 (1516)
T KOG1832|consen 1160 TSSSSSSPLSALWDASSTGGP-----------------------------RHSFDEDKAVKFSNS-LQFRALGTEADDAL 1209 (1516)
T ss_pred eeccccCchHHHhccccccCc-----------------------------cccccccceeehhhh-HHHHHhcccccceE
Confidence 5555444 4668887652100 111 23456778765 44556666667889
Q ss_pred EEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCC
Q 005506 242 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (693)
Q Consensus 242 iwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~ 311 (693)
+||+.+..++.+ ++.+.... .+.-+.+.|+|+...++- || .+||++..
T Consensus 1210 ~YDvqT~~~l~t------------ylt~~~~~-----~y~~n~a~FsP~D~LIln---dG--vLWDvR~~ 1257 (1516)
T KOG1832|consen 1210 LYDVQTCSPLQT------------YLTDTVTS-----SYSNNLAHFSPCDTLILN---DG--VLWDVRIP 1257 (1516)
T ss_pred EEecccCcHHHH------------hcCcchhh-----hhhccccccCCCcceEee---Cc--eeeeeccH
Confidence 999998765433 22221111 112367899999987763 33 58999985
No 412
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.36 E-value=0.00029 Score=55.43 Aligned_cols=64 Identities=17% Similarity=0.186 Sum_probs=56.0
Q ss_pred HHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCc
Q 005506 368 EIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSF 441 (693)
Q Consensus 368 ~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~ 441 (693)
..|...++.|+ |..|+..|.++++..|.. ...+...|.+++++ |++.+|+.-..++++++|+++
T Consensus 2 ~~a~~~~~~g~-~~~A~~~~~~~l~~~P~~------~~a~~~lg~~~~~~---g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGD-YDEAIAAFEQALKQDPDN------PEAWYLLGRILYQQ---GRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTH-HHHHHHHHHHHHCCSTTH------HHHHHHHHHHHHHT---T-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCC-HHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHCcCCC
Confidence 46788899999 999999999999999876 78899999999996 459999999999999999874
No 413
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.36 E-value=0.00078 Score=83.94 Aligned_cols=102 Identities=13% Similarity=-0.011 Sum_probs=83.7
Q ss_pred hhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcch
Q 005506 364 RMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRA 443 (693)
Q Consensus 364 ~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~KA 443 (693)
..+...|..+.+.|+ +.+|++.|.++++..|.+ ...+.+.|.+|.+. |++.+|+..+.++++++|+++.+
T Consensus 604 ~~~~~La~~~~~~g~-~~~A~~~y~~al~~~P~~------~~a~~~la~~~~~~---g~~~eA~~~l~~ll~~~p~~~~~ 673 (1157)
T PRK11447 604 RIDLTLADWAQQRGD-YAAARAAYQRVLTREPGN------ADARLGLIEVDIAQ---GDLAAARAQLAKLPATANDSLNT 673 (1157)
T ss_pred hHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHC---CCHHHHHHHHHHHhccCCCChHH
Confidence 344556777788888 999999999999888776 56777888888885 45888998888888998988888
Q ss_pred hhhHHHHHHHhccHHHHHHHHHHHcccCCCCc
Q 005506 444 HLYMSEALEQLCKYKEALDFAIAAQCLDPSNS 475 (693)
Q Consensus 444 ~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~ 475 (693)
++++|.++..+|++++|.+.+++++...|+..
T Consensus 674 ~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 705 (1157)
T PRK11447 674 QRRVALAWAALGDTAAAQRTFNRLIPQAKSQP 705 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhhCccCC
Confidence 88899999999999999999999888776543
No 414
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.36 E-value=0.0014 Score=56.82 Aligned_cols=99 Identities=17% Similarity=0.090 Sum_probs=75.8
Q ss_pred HHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCc------chhhhhhhHHHHHHhccccCcHHHHHHhHhHhh-----
Q 005506 366 LVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPM------LRHECLCIRAALLLKRKWKNDAQMAIRDCYNAR----- 434 (693)
Q Consensus 366 lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~------~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al----- 434 (693)
...+|...++.|- |.+|...|.+|++.....+..+ .-+.||.-.+.++.+++. |.++|.-+.+||
T Consensus 12 aLs~ae~ql~~g~-~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgr---y~e~L~sA~~aL~YFNR 87 (144)
T PF12968_consen 12 ALSDAERQLQDGA-YEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGR---YDECLQSADRALRYFNR 87 (144)
T ss_dssp HHHHHHHHHHHT--HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh-HHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHhh
Confidence 3456778888999 9999999999998754432221 224588888999999655 999999999998
Q ss_pred --ccCCC----CcchhhhHHHHHHHhccHHHHHHHHHHHc
Q 005506 435 --RIDSS----SFRAHLYMSEALEQLCKYKEALDFAIAAQ 468 (693)
Q Consensus 435 --~l~p~----~~KA~~r~a~al~~l~~~~eA~~~~~~~~ 468 (693)
+|+.+ ++.|.|.||.|+..+|+.+||+..|+++-
T Consensus 88 RGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 88 RGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp H--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 45554 57799999999999999999999888653
No 415
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.33 E-value=0.0013 Score=71.65 Aligned_cols=100 Identities=18% Similarity=0.150 Sum_probs=84.7
Q ss_pred HHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCc-chhh
Q 005506 367 VEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSF-RAHL 445 (693)
Q Consensus 367 k~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~-KA~~ 445 (693)
...|.-.++.++ +..|+..|.++++..|.. ...+...+.+|.+. |++.+|+....++++++|.+. .++.
T Consensus 184 ~~la~~~~~~~~-~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~~ 253 (389)
T PRK11788 184 CELAQQALARGD-LDAARALLKKALAADPQC------VRASILLGDLALAQ---GDYAAAIEALERVEEQDPEYLSEVLP 253 (389)
T ss_pred HHHHHHHHhCCC-HHHHHHHHHHHHhHCcCC------HHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHChhhHHHHHH
Confidence 345666678888 999999999999987765 45677888999886 449999999999999999874 5678
Q ss_pred hHHHHHHHhccHHHHHHHHHHHcccCCCCch
Q 005506 446 YMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (693)
Q Consensus 446 r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~ 476 (693)
.++.++..+|++++|.+.++++++..|+...
T Consensus 254 ~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~ 284 (389)
T PRK11788 254 KLMECYQALGDEAEGLEFLRRALEEYPGADL 284 (389)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCchH
Confidence 8899999999999999999999999997643
No 416
>PRK11906 transcriptional regulator; Provisional
Probab=97.33 E-value=0.00052 Score=73.72 Aligned_cols=105 Identities=12% Similarity=0.032 Sum_probs=85.2
Q ss_pred HHHHHhhhhcCC--ChhHHHHhhHHHH---hcccCCCCCcchhhhhhhHHHHHHhcc---c---cCcHHHHHHhHhHhhc
Q 005506 367 VEIARNSLEEGK--HPYYGIEACNEVL---EGHLSGIGPMLRHECLCIRAALLLKRK---W---KNDAQMAIRDCYNARR 435 (693)
Q Consensus 367 k~~gn~~~~~g~--~y~~Ai~~Y~~ai---~~~~~~~~~~~~~~~~~NRA~~~lk~~---~---~~d~~~Al~Dc~~Al~ 435 (693)
.-.|...+..+. ....|+.++.+|+ ...|.. +..|+-+|.||+.+. | ..+..+|++-+.+|++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~------a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve 332 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLK------TECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD 332 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCccc------HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence 444555543333 2467888899999 666665 788999999998763 3 2355678999999999
Q ss_pred cCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchh
Q 005506 436 IDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 477 (693)
Q Consensus 436 l~p~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~ 477 (693)
+||.++.|++.+|.++.-+++++.|...|++++.++|+.+.+
T Consensus 333 ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~ 374 (458)
T PRK11906 333 ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASL 374 (458)
T ss_pred cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHH
Confidence 999999999999999999999999999999999999998764
No 417
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.00099 Score=72.22 Aligned_cols=115 Identities=17% Similarity=0.071 Sum_probs=94.4
Q ss_pred hhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCc-chhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcc
Q 005506 364 RMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPM-LRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR 442 (693)
Q Consensus 364 ~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~-~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~K 442 (693)
-.+.+.|--+|+.+. |..|+..+..++...+....+. ....++.|.+-+|-|.+. +.+||.-..+||.+.|.++.
T Consensus 415 lv~~Elgvvay~~~~-y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~---~~eAI~~~q~aL~l~~k~~~ 490 (611)
T KOG1173|consen 415 LVLHELGVVAYTYEE-YPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK---YEEAIDYYQKALLLSPKDAS 490 (611)
T ss_pred hhhhhhhheeehHhh-hHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh---HHHHHHHHHHHHHcCCCchh
Confidence 345667777788888 9999999998885443321111 235678999999999877 99999999999999999999
Q ss_pred hhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHH
Q 005506 443 AHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVE 482 (693)
Q Consensus 443 A~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~ 482 (693)
+|--.|-++..+|+++.|.+.|.+++.+.|.|.-+.+.+.
T Consensus 491 ~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 491 THASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 9999999999999999999999999999999976554443
No 418
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.31 E-value=0.0014 Score=73.79 Aligned_cols=110 Identities=19% Similarity=0.126 Sum_probs=75.9
Q ss_pred hhhHHHHHHhhhhcCC--ChhHHHHhhHHHHhcccCCC----------------CC---c-c------------------
Q 005506 363 CRMLVEIARNSLEEGK--HPYYGIEACNEVLEGHLSGI----------------GP---M-L------------------ 402 (693)
Q Consensus 363 a~~lk~~gn~~~~~g~--~y~~Ai~~Y~~ai~~~~~~~----------------~~---~-~------------------ 402 (693)
+=.+.-+|..++..+. .+..|+.++.+||+..|+.. .+ . +
T Consensus 339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~ 418 (517)
T PRK10153 339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNV 418 (517)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcC
Confidence 3445556666554322 37789999999999887651 00 0 0
Q ss_pred hhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCch
Q 005506 403 RHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (693)
Q Consensus 403 ~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~ 476 (693)
.+..|.-.|..++. .|++.+|.....+|++++|+ .-||+.+|++++..|++++|.+.|++|+.++|.+..
T Consensus 419 ~~~~~~ala~~~~~---~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 419 LPRIYEILAVQALV---KGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred ChHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 00111112222222 46789999999999999994 679999999999999999999999999999998765
No 419
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=97.30 E-value=0.0013 Score=68.69 Aligned_cols=106 Identities=17% Similarity=0.152 Sum_probs=84.4
Q ss_pred chhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCC--CC-------c---chhhhhhhHHHHHHhccccCcHHHHHH
Q 005506 361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGI--GP-------M---LRHECLCIRAALLLKRKWKNDAQMAIR 428 (693)
Q Consensus 361 ~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~--~~-------~---~~~~~~~NRA~~~lk~~~~~d~~~Al~ 428 (693)
+..+.....+..+|++++ |..|+..+..||+++.+.. ++ + +.+-+-.....|||+++. ...||.
T Consensus 174 kwl~vAL~das~~yrqk~-ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rk---pdlALn 249 (569)
T PF15015_consen 174 KWLQVALKDASSCYRQKK-YAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRK---PDLALN 249 (569)
T ss_pred HHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCC---CchHHH
Confidence 344455556778899999 9999999999999876421 11 1 112234578999999876 889999
Q ss_pred hHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHccc
Q 005506 429 DCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCL 470 (693)
Q Consensus 429 Dc~~Al~l~p~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~ 470 (693)
...+.|-++|.++.-|+|+|-|+-.|.+|.||-+.+.-+.-+
T Consensus 250 h~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ym 291 (569)
T PF15015_consen 250 HSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYM 291 (569)
T ss_pred HHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988777644
No 420
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.27 E-value=0.0025 Score=62.02 Aligned_cols=113 Identities=13% Similarity=-0.025 Sum_probs=91.7
Q ss_pred ccCcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhcc
Q 005506 357 ATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRI 436 (693)
Q Consensus 357 ~~~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l 436 (693)
...+.....+-..|......|+ |.+|...+.+|+.. |.. ...+.-|-|...|.+|.+. +..|-....+||++
T Consensus 97 sl~p~~GdVLNNYG~FLC~qg~-~~eA~q~F~~Al~~-P~Y---~~~s~t~eN~G~Cal~~gq---~~~A~~~l~raL~~ 168 (250)
T COG3063 97 SLAPNNGDVLNNYGAFLCAQGR-PEEAMQQFERALAD-PAY---GEPSDTLENLGLCALKAGQ---FDQAEEYLKRALEL 168 (250)
T ss_pred hcCCCccchhhhhhHHHHhCCC-hHHHHHHHHHHHhC-CCC---CCcchhhhhhHHHHhhcCC---chhHHHHHHHHHHh
Confidence 3455566777778888888888 99999999998873 222 1225678899999999654 88999999999999
Q ss_pred CCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchh
Q 005506 437 DSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 477 (693)
Q Consensus 437 ~p~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~ 477 (693)
||++.-+..-+++-++.-|+|-+|.-.++.....-+-+++.
T Consensus 169 dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~s 209 (250)
T COG3063 169 DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAES 209 (250)
T ss_pred CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHH
Confidence 99999999999999999999999999999988877755443
No 421
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.26 E-value=0.011 Score=59.32 Aligned_cols=194 Identities=16% Similarity=0.155 Sum_probs=107.8
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCc
Q 005506 61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS 140 (693)
Q Consensus 61 ~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~ 140 (693)
++..+++++.++.|..||..+++.+..+... ..+...... . +..++.+..++.|+.+|..++ +.+
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~--~~~~~~~~~-~--~~~v~v~~~~~~l~~~d~~tG----------~~~ 99 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLP--GPISGAPVV-D--GGRVYVGTSDGSLYALDAKTG----------KVL 99 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECS--SCGGSGEEE-E--TTEEEEEETTSEEEEEETTTS----------CEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecc--ccccceeee-c--ccccccccceeeeEecccCCc----------cee
Confidence 4567777789999999999999988776322 211111122 2 356777778889999998765 334
Q ss_pred eee-ccCC---CCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCcc
Q 005506 141 ALY-QCHT---RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL 216 (693)
Q Consensus 141 ~~~-~~h~---~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~ 216 (693)
... .... .......... .+..++.+..++.|..+|+++++ .+|............. ....
T Consensus 100 W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~tG~--------------~~w~~~~~~~~~~~~~-~~~~ 163 (238)
T PF13360_consen 100 WSIYLTSSPPAGVRSSSSPAV-DGDRLYVGTSSGKLVALDPKTGK--------------LLWKYPVGEPRGSSPI-SSFS 163 (238)
T ss_dssp EEEEE-SSCTCSTB--SEEEE-ETTEEEEEETCSEEEEEETTTTE--------------EEEEEESSTT-SS--E-EEET
T ss_pred eeeccccccccccccccCceE-ecCEEEEEeccCcEEEEecCCCc--------------EEEEeecCCCCCCcce-eeec
Confidence 432 2111 1111222222 24567778889999999999875 3333222110000000 0000
Q ss_pred ce-EEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEE
Q 005506 217 SL-KSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVL 295 (693)
Q Consensus 217 ~v-~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~ 295 (693)
.+ ..+.+. . + .+.+++.++.+.-+|+.+++.+... + . . .+.. ...+.+..|+
T Consensus 164 ~~~~~~~~~-~-~-~v~~~~~~g~~~~~d~~tg~~~w~~--------------~--~------~-~~~~-~~~~~~~~l~ 216 (238)
T PF13360_consen 164 DINGSPVIS-D-G-RVYVSSGDGRVVAVDLATGEKLWSK--------------P--I------S-GIYS-LPSVDGGTLY 216 (238)
T ss_dssp TEEEEEECC-T-T-EEEEECCTSSEEEEETTTTEEEEEE--------------C--S------S--ECE-CEECCCTEEE
T ss_pred ccccceEEE-C-C-EEEEEcCCCeEEEEECCCCCEEEEe--------------c--C------C-CccC-CceeeCCEEE
Confidence 11 222233 2 3 6666777775433388876422100 0 0 0 1111 2457788888
Q ss_pred EEecCCcEEEEECCCCC
Q 005506 296 LSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 296 sgs~Dg~V~lwdl~~~~ 312 (693)
+++.++.|+.||+.+++
T Consensus 217 ~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 217 VTSSDGRLYALDLKTGK 233 (238)
T ss_dssp EEETTTEEEEEETTTTE
T ss_pred EEeCCCEEEEEECCCCC
Confidence 88899999999999964
No 422
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.25 E-value=0.00087 Score=72.11 Aligned_cols=87 Identities=13% Similarity=0.109 Sum_probs=76.0
Q ss_pred CcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCC
Q 005506 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS 438 (693)
Q Consensus 359 ~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p 438 (693)
.+.....+...|..++..|+ |..|+..|.+||.+.|.. +..|.++|.+|+++ |++..|+..+.+||+++|
T Consensus 32 ~P~~~~a~~~~a~~~~~~g~-~~eAl~~~~~Al~l~P~~------~~a~~~lg~~~~~l---g~~~eA~~~~~~al~l~P 101 (356)
T PLN03088 32 DPNNAELYADRAQANIKLGN-FTEAVADANKAIELDPSL------AKAYLRKGTACMKL---EEYQTAKAALEKGASLAP 101 (356)
T ss_pred CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHHh---CCHHHHHHHHHHHHHhCC
Confidence 34445667778888999999 999999999999999877 77899999999996 559999999999999999
Q ss_pred CCcchhhhHHHHHHHhc
Q 005506 439 SSFRAHLYMSEALEQLC 455 (693)
Q Consensus 439 ~~~KA~~r~a~al~~l~ 455 (693)
++..++..+++|...|.
T Consensus 102 ~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 102 GDSRFTKLIKECDEKIA 118 (356)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999888877774
No 423
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.22 E-value=0.0003 Score=47.31 Aligned_cols=33 Identities=39% Similarity=0.595 Sum_probs=29.5
Q ss_pred chhhhHHHHHHHhccHHHHHHHHHHHcccCCCC
Q 005506 442 RAHLYMSEALEQLCKYKEALDFAIAAQCLDPSN 474 (693)
Q Consensus 442 KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~ 474 (693)
++++.+|.+++.+|++++|+++++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 688999999999999999999999999999975
No 424
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.22 E-value=0.0016 Score=62.13 Aligned_cols=101 Identities=9% Similarity=0.019 Sum_probs=77.6
Q ss_pred HHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCc---chhhh
Q 005506 370 ARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSF---RAHLY 446 (693)
Q Consensus 370 gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~---KA~~r 446 (693)
.++.|-... |..+-......++..+. ...+.+|.+.+.++... |++.+|+.-+.+|+.+.|+.. -+++.
T Consensus 6 ~~~~~~~~~-~~~~~~~l~~~~~~~~~----~~~a~~~~~~g~~~~~~---g~~~~A~~~~~~al~l~~~~~~~~~~~~~ 77 (168)
T CHL00033 6 RNDNFIDKT-FTIVADILLRILPTTSG----EKEAFTYYRDGMSAQSE---GEYAEALQNYYEAMRLEIDPYDRSYILYN 77 (168)
T ss_pred ccccccccc-cccchhhhhHhccCCch----hHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhccccchhhHHHHHH
Confidence 355565566 66665555444443322 23466889999999985 559999999999999977643 48999
Q ss_pred HHHHHHHhccHHHHHHHHHHHcccCCCCchhH
Q 005506 447 MSEALEQLCKYKEALDFAIAAQCLDPSNSVMA 478 (693)
Q Consensus 447 ~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~ 478 (693)
+|.++..+|++++|++.+++++.++|.+....
T Consensus 78 lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~ 109 (168)
T CHL00033 78 IGLIHTSNGEHTKALEYYFQALERNPFLPQAL 109 (168)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH
Confidence 99999999999999999999999999886543
No 425
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.21 E-value=0.003 Score=67.68 Aligned_cols=96 Identities=22% Similarity=0.022 Sum_probs=58.4
Q ss_pred HHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHH
Q 005506 369 IARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMS 448 (693)
Q Consensus 369 ~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~KA~~r~a 448 (693)
.+.-.++.++ +.+|++.+.+++...|.. ..+..|.|.+|++.+. +.+|++-.+..+.-+|+++-.|.++|
T Consensus 346 ~~~i~~~~nk-~~~A~e~~~kal~l~P~~------~~l~~~~a~all~~g~---~~eai~~L~~~~~~~p~dp~~w~~LA 415 (484)
T COG4783 346 AGDILLEANK-AKEAIERLKKALALDPNS------PLLQLNLAQALLKGGK---PQEAIRILNRYLFNDPEDPNGWDLLA 415 (484)
T ss_pred HHHHHHHcCC-hHHHHHHHHHHHhcCCCc------cHHHHHHHHHHHhcCC---hHHHHHHHHHHhhcCCCCchHHHHHH
Confidence 3344455555 666666666666666554 4566666666666443 66666666666666666666666666
Q ss_pred HHHHHhccHHHHHHHHHHHcccCCCC
Q 005506 449 EALEQLCKYKEALDFAIAAQCLDPSN 474 (693)
Q Consensus 449 ~al~~l~~~~eA~~~~~~~~~~~p~~ 474 (693)
+|+..+|+..+|...+-..+.+.-..
T Consensus 416 qay~~~g~~~~a~~A~AE~~~~~G~~ 441 (484)
T COG4783 416 QAYAELGNRAEALLARAEGYALAGRL 441 (484)
T ss_pred HHHHHhCchHHHHHHHHHHHHhCCCH
Confidence 66666666666666555555554443
No 426
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.20 E-value=0.0022 Score=65.20 Aligned_cols=99 Identities=14% Similarity=0.088 Sum_probs=81.0
Q ss_pred hhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHHH
Q 005506 372 NSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEAL 451 (693)
Q Consensus 372 ~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~KA~~r~a~al 451 (693)
..++..++|..||+.-.+..+..+.....++ +-+||-.|..++... |+..|+.-..+|++-||+.++|-.-+|+..
T Consensus 149 ~IYQ~treW~KAId~A~~L~k~~~q~~~~eI-AqfyCELAq~~~~~~---~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~ 224 (389)
T COG2956 149 NIYQATREWEKAIDVAERLVKLGGQTYRVEI-AQFYCELAQQALASS---DVDRARELLKKALQADKKCVRASIILGRVE 224 (389)
T ss_pred HHHHHhhHHHHHHHHHHHHHHcCCccchhHH-HHHHHHHHHHHhhhh---hHHHHHHHHHHHHhhCccceehhhhhhHHH
Confidence 3344444577777776666665554433333 679999999999854 499999999999999999999999999999
Q ss_pred HHhccHHHHHHHHHHHcccCCCC
Q 005506 452 EQLCKYKEALDFAIAAQCLDPSN 474 (693)
Q Consensus 452 ~~l~~~~eA~~~~~~~~~~~p~~ 474 (693)
...|+|+.|.+.++.+++.+|++
T Consensus 225 ~~~g~y~~AV~~~e~v~eQn~~y 247 (389)
T COG2956 225 LAKGDYQKAVEALERVLEQNPEY 247 (389)
T ss_pred HhccchHHHHHHHHHHHHhChHH
Confidence 99999999999999999999987
No 427
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.18 E-value=0.0018 Score=57.21 Aligned_cols=68 Identities=25% Similarity=0.174 Sum_probs=60.7
Q ss_pred hhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCC---cchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCch
Q 005506 406 CLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS---FRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (693)
Q Consensus 406 ~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~---~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~ 476 (693)
.+.+.|..+++. |++.+|+..+.++++.+|++ ..+++.+|.++...+++++|+..++.++..+|++..
T Consensus 4 ~~~~~~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 74 (119)
T TIGR02795 4 AYYDAALLVLKA---GDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPK 74 (119)
T ss_pred HHHHHHHHHHHc---CCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCc
Confidence 467788888885 45999999999999999987 579999999999999999999999999999998643
No 428
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.17 E-value=0.081 Score=54.58 Aligned_cols=173 Identities=18% Similarity=0.199 Sum_probs=92.0
Q ss_pred EEECCCCCEEEEEeC-----CCcEEEEECC-CCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeC-------CCcEEEE
Q 005506 56 ISWNSKGSLLISGSD-----DTHINVWSYS-SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-------DAEVRLF 122 (693)
Q Consensus 56 l~~s~~g~~LaSgs~-----Dg~I~IWd~~-~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~-------Dg~V~vw 122 (693)
-.|+++|++|.+.-. .|.|-|||.. +.+.+..+ ..|.-.-..+.+.|+ +..|+.+-. .|..++
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~-~s~GIGPHel~l~pD--G~tLvVANGGI~Thpd~GR~kL- 131 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEF-PSHGIGPHELLLMPD--GETLVVANGGIETHPDSGRAKL- 131 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEe-cCCCcChhhEEEcCC--CCEEEEEcCCCccCcccCceec-
Confidence 459999999998744 4789999998 56777777 566656677889998 566665532 122221
Q ss_pred EcCCCCCCC--CCCCCCCCcee--e--ccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceE
Q 005506 123 NLSRFSGRG--LDDNAITPSAL--Y--QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (693)
Q Consensus 123 dl~~~~~~~--~~~~~~~~~~~--~--~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~ 196 (693)
++.+..... .+..+.+.+.. + .-|.-+|..|++.++ +..+ .+. +|.-......+ .
T Consensus 132 Nl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~-G~V~-~a~------Q~qg~~~~~~P-----------L 192 (305)
T PF07433_consen 132 NLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGD-GTVA-FAM------QYQGDPGDAPP-----------L 192 (305)
T ss_pred ChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCC-CcEE-EEE------ecCCCCCccCC-----------e
Confidence 111110000 00011111211 2 235567777777763 3322 221 33332222111 1
Q ss_pred EEeccCCceeeecCCC-----CCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCC
Q 005506 197 LLDLRCGAKRSLADPP-----KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL 251 (693)
Q Consensus 197 l~~~~~~~~~~l~~~~-----~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~ 251 (693)
+.-.+.+........+ .-...+-+|++++++....+|+=..+.+.+||..++..+
T Consensus 193 va~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~ 252 (305)
T PF07433_consen 193 VALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLL 252 (305)
T ss_pred EEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEe
Confidence 1111112211111111 112468899999985444456667889999999987644
No 429
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.16 E-value=0.073 Score=62.88 Aligned_cols=211 Identities=10% Similarity=0.086 Sum_probs=126.9
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcC--CCC
Q 005506 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS--RFS 128 (693)
Q Consensus 51 ~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~--~~~ 128 (693)
+.|.++.|..++..++.+..+|.|.+-|+.+..... + ..-...|.+++|+|+ ++.++.....+++.+-.-. .-.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-v-g~vd~GI~aaswS~D--ee~l~liT~~~tll~mT~~f~~i~ 144 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEI-V-GNVDNGISAASWSPD--EELLALITGRQTLLFMTKDFEPIA 144 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceee-e-eeccCceEEEeecCC--CcEEEEEeCCcEEEEEeccccchh
Confidence 589999999999999999999999999988764322 1 234678999999999 6888888877777654321 000
Q ss_pred CCCC-----------CCCCCCCceeecc---------------------CCCCeEEEEEecCCCcEEEEEe----CC-Cc
Q 005506 129 GRGL-----------DDNAITPSALYQC---------------------HTRRVKKLAVEVGNPHVVWSAS----ED-GT 171 (693)
Q Consensus 129 ~~~~-----------~~~~~~~~~~~~~---------------------h~~~V~~la~sp~~~~~l~Sgs----~D-g~ 171 (693)
.+.. ...-.+....+.+ -.+.=+.|.|-- ++.+|++.. .+ ..
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG-DGEYFAVSFVESETGTRK 223 (1265)
T ss_pred ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc-CCcEEEEEEEeccCCcee
Confidence 0000 0000000001110 111224578876 667887732 23 78
Q ss_pred EEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEE---eCCCcEEEEecCCC
Q 005506 172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVG---GSDAFARLYDRRML 248 (693)
Q Consensus 172 V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latg---s~Dg~IriwD~r~~ 248 (693)
|++||.. +..- . ... .....-.+++|-|. |.++++- .+|+.|.+|..+-.
T Consensus 224 irV~drE-g~Ln----------------s-------~se--~~~~l~~~LsWkPs-gs~iA~iq~~~sd~~IvffErNGL 276 (1265)
T KOG1920|consen 224 IRVYDRE-GALN----------------S-------TSE--PVEGLQHSLSWKPS-GSLIAAIQCKTSDSDIVFFERNGL 276 (1265)
T ss_pred EEEeccc-chhh----------------c-------ccC--cccccccceeecCC-CCeEeeeeecCCCCcEEEEecCCc
Confidence 9999976 2210 0 000 01122357899996 5677764 35778999987643
Q ss_pred CCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEE---EecCCcEEEEECCCC
Q 005506 249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL---SYSGEHVYLMDVNHA 311 (693)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~s---gs~Dg~V~lwdl~~~ 311 (693)
.. ..+.. +... ....|..++|+.++..|++ ......|++|-+.+-
T Consensus 277 ~h-g~f~l------------~~p~-----de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 277 RH-GEFVL------------PFPL-----DEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred cc-ccccc------------CCcc-----cccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 21 11100 0000 1113889999999999987 444556999998883
No 430
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.15 E-value=0.0011 Score=49.69 Aligned_cols=45 Identities=20% Similarity=0.305 Sum_probs=35.1
Q ss_pred hhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHHHHHHHHHH
Q 005506 443 AHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAA 491 (693)
Q Consensus 443 A~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l~~~i~~~ 491 (693)
-+|.+|.++..+|+|.+|+++++.+++++|+|.++. .|++.|+.+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~----~L~~~i~~~ 47 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ----SLKELIEDK 47 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH----HHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH----HHHHHHHHH
Confidence 378899999999999999999999999999997654 444444443
No 431
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.12 E-value=0.0059 Score=69.78 Aligned_cols=113 Identities=18% Similarity=0.037 Sum_probs=89.4
Q ss_pred CcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCC------------cchhhhhhhHHHHHHhccc-------
Q 005506 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGP------------MLRHECLCIRAALLLKRKW------- 419 (693)
Q Consensus 359 ~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~------------~~~~~~~~NRA~~~lk~~~------- 419 (693)
....+..+..+||..|..|+ +..|.+.+.++|+..|....+ .+...|++-..||+|+-+-
T Consensus 135 l~~~l~~ll~eAN~lfarg~-~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~l 213 (895)
T KOG2076|consen 135 LAPELRQLLGEANNLFARGD-LEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRL 213 (895)
T ss_pred cCHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 44457889999999999999 999999999999998876211 1112233344555554221
Q ss_pred ------cCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCC
Q 005506 420 ------KNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDP 472 (693)
Q Consensus 420 ------~~d~~~Al~Dc~~Al~l~p~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p 472 (693)
.|.+..|.--..+||+++|.+.+-+++|+.-|.++|++..|++.+.+++.+.|
T Consensus 214 adls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 34567788888999999999999999999999999999999999999999999
No 432
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.018 Score=65.32 Aligned_cols=166 Identities=19% Similarity=0.246 Sum_probs=105.7
Q ss_pred EEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCC-eEEEEEecCCCcEEEEEeCCCc-----EE
Q 005506 100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR-VKKLAVEVGNPHVVWSASEDGT-----LR 173 (693)
Q Consensus 100 ~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~-V~~la~sp~~~~~l~Sgs~Dg~-----V~ 173 (693)
+|++. +..+|.|+.+|.|.+.+-.. ..+..++.+... |..+.... +.++|++.++|+. |+
T Consensus 30 c~~s~--~~~vvigt~~G~V~~Ln~s~-----------~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llk 95 (933)
T KOG2114|consen 30 CCSSS--TGSVVIGTADGRVVILNSSF-----------QLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLK 95 (933)
T ss_pred EEcCC--CceEEEeeccccEEEecccc-----------eeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEE
Confidence 35555 57999999999888877653 334677777777 55554443 5578888888764 89
Q ss_pred EEeCCCCCCCCCCCCCCcccc--eEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCC
Q 005506 174 QHDFRQGSSCPPAGSSHQECR--NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL 251 (693)
Q Consensus 174 lwDlr~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~ 251 (693)
+||+....... .+.|. ..++.. ..|....++.+++++.+ -..+|+|-.+|.|.++.-.-....
T Consensus 96 iw~lek~~~n~-----sP~c~~~~ri~~~---------~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDr 160 (933)
T KOG2114|consen 96 IWDLEKVDKNN-----SPQCLYEHRIFTI---------KNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDR 160 (933)
T ss_pred EecccccCCCC-----Ccceeeeeeeecc---------CCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhcc
Confidence 99997653210 01121 111111 11234568899999987 689999999999999853321111
Q ss_pred cccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCC
Q 005506 252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 311 (693)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~ 311 (693)
.+ +.. .. -....+||.++|..+++.++-...-..|.+|.+...
T Consensus 161 gs-----------r~~----~~--~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr 203 (933)
T KOG2114|consen 161 GS-----------RQD----YS--HRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGR 203 (933)
T ss_pred cc-----------cee----ee--ccCCCCceeeEEecCCceeEEEEecceeEEEEecCC
Confidence 00 000 00 012237999999999988555556678999998853
No 433
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.10 E-value=0.049 Score=59.12 Aligned_cols=197 Identities=16% Similarity=0.101 Sum_probs=108.1
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceE-EEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCC
Q 005506 61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVF-CTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITP 139 (693)
Q Consensus 61 ~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~-sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~ 139 (693)
.+..+++++.++.|.-+|..+++.+-....+- .+. ... .. +..++.++.++.|..+|..++. .
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~--~~~~~p~--v~--~~~v~v~~~~g~l~ald~~tG~----------~ 127 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDE--RLSGGVG--AD--GGLVFVGTEKGEVIALDAEDGK----------E 127 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCC--CcccceE--Ec--CCEEEEEcCCCEEEEEECCCCc----------E
Confidence 36688888899999999999998876653221 121 121 12 4678888899999999997542 2
Q ss_pred ceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceE
Q 005506 140 SALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLK 219 (693)
Q Consensus 140 ~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~ 219 (693)
+..... ...+.+..... + ..++.++.+|.|..||.++++. +|......... ..... .
T Consensus 128 ~W~~~~-~~~~~~~p~v~-~-~~v~v~~~~g~l~a~d~~tG~~--------------~W~~~~~~~~~--~~~~~----~ 184 (377)
T TIGR03300 128 LWRAKL-SSEVLSPPLVA-N-GLVVVRTNDGRLTALDAATGER--------------LWTYSRVTPAL--TLRGS----A 184 (377)
T ss_pred eeeecc-CceeecCCEEE-C-CEEEEECCCCeEEEEEcCCCce--------------eeEEccCCCce--eecCC----C
Confidence 222221 11222111111 3 3555677899999999988752 33322211000 00000 0
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCC-cccccccCccccCCCCccceEEEEEcCCCCEEEEEe
Q 005506 220 SCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP-CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY 298 (693)
Q Consensus 220 sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs 298 (693)
+..+. +..++++..++.+..+|.++++.+........... .... +.. .. ....+ .+..+++++
T Consensus 185 sp~~~---~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~-----~~~--~~----~~p~~--~~~~vy~~~ 248 (377)
T TIGR03300 185 SPVIA---DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELER-----LVD--VD----GDPVV--DGGQVYAVS 248 (377)
T ss_pred CCEEE---CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhh-----hhc--cC----CccEE--ECCEEEEEE
Confidence 11111 13677888899999999988764432211000000 0000 000 00 01111 256788888
Q ss_pred cCCcEEEEECCCCC
Q 005506 299 SGEHVYLMDVNHAG 312 (693)
Q Consensus 299 ~Dg~V~lwdl~~~~ 312 (693)
.+|.++.||..+++
T Consensus 249 ~~g~l~a~d~~tG~ 262 (377)
T TIGR03300 249 YQGRVAALDLRSGR 262 (377)
T ss_pred cCCEEEEEECCCCc
Confidence 89999999998864
No 434
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.09 E-value=0.0021 Score=72.23 Aligned_cols=111 Identities=10% Similarity=0.178 Sum_probs=85.6
Q ss_pred EEEEEECCCCCEEEEEeC----CCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCC
Q 005506 53 VNAISWNSKGSLLISGSD----DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 128 (693)
Q Consensus 53 V~~l~~s~~g~~LaSgs~----Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~ 128 (693)
-+-++|+|...+||+++- -|.|.||- ++|.+.+.+. ..-.+++++|+|. .-.|+.|-.-|.+.+|.....
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt--~P~hatSLCWHpe--~~vLa~gwe~g~~~v~~~~~~- 91 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT--YPVHATSLCWHPE--EFVLAQGWEMGVSDVQKTNTT- 91 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc--cceehhhhccChH--HHHHhhccccceeEEEecCCc-
Confidence 344689999999998873 47788885 5666555442 2234678999998 477888888899999998853
Q ss_pred CCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 005506 129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179 (693)
Q Consensus 129 ~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~ 179 (693)
+.-.....|..+|..+.|+| ++..++|+..-|.|.+|....
T Consensus 92 ---------e~htv~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 92 ---------ETHTVVETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred ---------eeeeeccCCCCCceeEEecC-CCCeEEEcCCCceeEEEEeee
Confidence 33444557999999999999 678888999999999997653
No 435
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.09 E-value=0.0014 Score=62.81 Aligned_cols=99 Identities=20% Similarity=0.088 Sum_probs=79.2
Q ss_pred HHHhhhhcCCC------hhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcc
Q 005506 369 IARNSLEEGKH------PYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR 442 (693)
Q Consensus 369 ~gn~~~~~g~~------y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~K 442 (693)
++.-.|+.|.- +..|-.-+++++.+.|+- +..|.-.+.-++. .|||.+|..-.+..++|||.+--
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m------~~vfNyLG~Yl~~---a~~fdaa~eaFds~~ELDp~y~Y 134 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDM------PEVFNYLGIYLTQ---AGNFDAAYEAFDSVLELDPTYNY 134 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCc------HHHHHHHHHHHHh---cccchHHHHHhhhHhccCCcchH
Confidence 33445555551 355556688899888765 5565555555555 57799999999999999999999
Q ss_pred hhhhHHHHHHHhccHHHHHHHHHHHcccCCCCch
Q 005506 443 AHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (693)
Q Consensus 443 A~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~ 476 (693)
|+..||.++.--|+|+-|.+++.+..+-||+++-
T Consensus 135 a~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 135 AHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred HHhccceeeeecCchHhhHHHHHHHHhcCCCChH
Confidence 9999999999999999999999999999998864
No 436
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.09 E-value=0.00084 Score=53.17 Aligned_cols=65 Identities=17% Similarity=0.099 Sum_probs=54.7
Q ss_pred hhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHH
Q 005506 374 LEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMS 448 (693)
Q Consensus 374 ~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~KA~~r~a 448 (693)
++.|+ |..|+..|.+++...|.+ ...+.+.|.||++. |++.+|..-+.+++..+|++...+.-+|
T Consensus 2 l~~~~-~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~---g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGD-YDEAIELLEKALQRNPDN------PEARLLLAQCYLKQ---GQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTH-HHHHHHHHHHHHHHTTTS------HHHHHHHHHHHHHT---T-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccC-HHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 56788 999999999999999987 77888999999996 5599999999999999999754443333
No 437
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.07 E-value=0.0028 Score=58.78 Aligned_cols=94 Identities=17% Similarity=0.100 Sum_probs=56.3
Q ss_pred HHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhh
Q 005506 366 LVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHL 445 (693)
Q Consensus 366 lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~KA~~ 445 (693)
....+...+..|+ |..|+..|.+++...++ +.++.....+.|.+++..+ ++.+|+..... +.-.+-...++.
T Consensus 51 ~l~lA~~~~~~g~-~~~A~~~l~~~~~~~~d---~~l~~~a~l~LA~~~~~~~---~~d~Al~~L~~-~~~~~~~~~~~~ 122 (145)
T PF09976_consen 51 ALQLAKAAYEQGD-YDEAKAALEKALANAPD---PELKPLARLRLARILLQQG---QYDEALATLQQ-IPDEAFKALAAE 122 (145)
T ss_pred HHHHHHHHHHCCC-HHHHHHHHHHHHhhCCC---HHHHHHHHHHHHHHHHHcC---CHHHHHHHHHh-ccCcchHHHHHH
Confidence 3445566666777 77777777777764422 2444555666666666643 36666666543 222333344556
Q ss_pred hHHHHHHHhccHHHHHHHHHHH
Q 005506 446 YMSEALEQLCKYKEALDFAIAA 467 (693)
Q Consensus 446 r~a~al~~l~~~~eA~~~~~~~ 467 (693)
.+|.+++..|++++|...|+++
T Consensus 123 ~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 123 LLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHCCCHHHHHHHHHHh
Confidence 6677777777777777777655
No 438
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.03 E-value=0.00056 Score=55.92 Aligned_cols=64 Identities=17% Similarity=0.123 Sum_probs=54.6
Q ss_pred hhhhhhHHHHHHhccccCcHHHHHHhHhHhhccC-------CCCcchhhhHHHHHHHhccHHHHHHHHHHHccc
Q 005506 404 HECLCIRAALLLKRKWKNDAQMAIRDCYNARRID-------SSSFRAHLYMSEALEQLCKYKEALDFAIAAQCL 470 (693)
Q Consensus 404 ~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~-------p~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~ 470 (693)
+.+|.|.|.+|..+ |++..|+..+.+||++- |.-+.+++.+|.++..+|++++|++.+++++++
T Consensus 5 a~~~~~la~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYREL---GRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHT---T-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 67899999999996 45999999999999762 233679999999999999999999999988754
No 439
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.03 E-value=0.0045 Score=73.24 Aligned_cols=115 Identities=10% Similarity=-0.106 Sum_probs=78.8
Q ss_pred CcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCC-------------cchhhhhhh-------------H--
Q 005506 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGP-------------MLRHECLCI-------------R-- 410 (693)
Q Consensus 359 ~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~-------------~~~~~~~~N-------------R-- 410 (693)
.+..+.....++...+++|+ |..|++.+.++++..|..... .-.+.-|++ +
T Consensus 30 ~p~~~~~~y~~aii~~r~Gd-~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llal 108 (822)
T PRK14574 30 NPAMADTQYDSLIIRARAGD-TAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASA 108 (822)
T ss_pred CccchhHHHHHHHHHHhCCC-HHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHH
Confidence 34455677788889999999 999999999999988875100 000111111 2
Q ss_pred HHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchh
Q 005506 411 AALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 477 (693)
Q Consensus 411 A~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~ 477 (693)
|..|.. .|++..|+.-+.++++++|+++.+++-++.++..+++.++|++.++++..++|.+...
T Consensus 109 A~ly~~---~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~ 172 (822)
T PRK14574 109 ARAYRN---EKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY 172 (822)
T ss_pred HHHHHH---cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH
Confidence 223333 3557777777777777777777777777777777777777777777777777775543
No 440
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.00 E-value=0.0026 Score=68.63 Aligned_cols=90 Identities=24% Similarity=0.267 Sum_probs=75.6
Q ss_pred HhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHH
Q 005506 371 RNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEA 450 (693)
Q Consensus 371 n~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~KA~~r~a~a 450 (693)
.-++..++ ..+||....++|...|.. +.++.--|..+++.+ ++..|+.-+.+|.++.|+..++++.+|+|
T Consensus 208 ~v~l~~~~-E~~AI~ll~~aL~~~p~d------~~LL~~Qa~fLl~k~---~~~lAL~iAk~av~lsP~~f~~W~~La~~ 277 (395)
T PF09295_consen 208 RVYLLMNE-EVEAIRLLNEALKENPQD------SELLNLQAEFLLSKK---KYELALEIAKKAVELSPSEFETWYQLAEC 277 (395)
T ss_pred HHHHhcCc-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 33444556 779999999999887766 677777888888854 49999999999999999999999999999
Q ss_pred HHHhccHHHHHHHHHHHccc
Q 005506 451 LEQLCKYKEALDFAIAAQCL 470 (693)
Q Consensus 451 l~~l~~~~eA~~~~~~~~~~ 470 (693)
|..+|++++|+..+..+=..
T Consensus 278 Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 278 YIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHhcCCHHHHHHHHhcCcCC
Confidence 99999999999888755433
No 441
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.98 E-value=0.0071 Score=64.93 Aligned_cols=111 Identities=17% Similarity=0.091 Sum_probs=89.2
Q ss_pred HHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhh
Q 005506 366 LVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHL 445 (693)
Q Consensus 366 lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~KA~~ 445 (693)
..-.+...+..++ +..|.....+.|...|++ +-+..-++..+++.+. ..+|+.-..+|+.++|+..--.+
T Consensus 309 ~YG~A~~~~~~~~-~d~A~~~l~~L~~~~P~N------~~~~~~~~~i~~~~nk---~~~A~e~~~kal~l~P~~~~l~~ 378 (484)
T COG4783 309 QYGRALQTYLAGQ-YDEALKLLQPLIAAQPDN------PYYLELAGDILLEANK---AKEAIERLKKALALDPNSPLLQL 378 (484)
T ss_pred HHHHHHHHHHhcc-cchHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCccHHHH
Confidence 3344555666777 777777777777777776 5566677888888655 99999999999999999977778
Q ss_pred hHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHHHHH
Q 005506 446 YMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKK 486 (693)
Q Consensus 446 r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l~~ 486 (693)
.+|++|+++|++.+|...++..+..+|+++..-..+.+...
T Consensus 379 ~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~ 419 (484)
T COG4783 379 NLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYA 419 (484)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHH
Confidence 89999999999999999999999999999877555544433
No 442
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.95 E-value=0.009 Score=55.34 Aligned_cols=101 Identities=27% Similarity=0.176 Sum_probs=70.9
Q ss_pred hhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcc----------------hhhhhhhHHHHHHhccccCcHHHHH
Q 005506 364 RMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPML----------------RHECLCIRAALLLKRKWKNDAQMAI 427 (693)
Q Consensus 364 ~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~----------------~~~~~~NRA~~~lk~~~~~d~~~Al 427 (693)
+.+...|......+. ...++..|.+++.++....-+.+ ...+....+..++. .|++..|+
T Consensus 7 ~~~~~~a~~~~~~~~-~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~---~~~~~~a~ 82 (146)
T PF03704_consen 7 EALVREARAAARAGD-PEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLE---AGDYEEAL 82 (146)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH---TT-HHHHH
T ss_pred HHHHHHHHHHHHCCC-HHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCHHHHH
Confidence 344455666667777 88999999999998754321110 01122334444444 46799999
Q ss_pred HhHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHc
Q 005506 428 RDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQ 468 (693)
Q Consensus 428 ~Dc~~Al~l~p~~~KA~~r~a~al~~l~~~~eA~~~~~~~~ 468 (693)
..|.+++.+||-+-.+|..+.++|..+|++.+|++.|+++.
T Consensus 83 ~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 83 RLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998764
No 443
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.95 E-value=0.038 Score=47.94 Aligned_cols=104 Identities=22% Similarity=0.167 Sum_probs=71.4
Q ss_pred ceEEEEEeeCCCC--CEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcE
Q 005506 95 NVFCTKFVPETSD--ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTL 172 (693)
Q Consensus 95 ~I~sv~f~p~~~~--~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V 172 (693)
+|+++++..-.++ +.|++|+.|..||+|+-. ..+..+. -...|+.|+-.. +..|+.+.++|+|
T Consensus 1 ~V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~------------e~~~Ei~-e~~~v~~L~~~~--~~~F~Y~l~NGTV 65 (111)
T PF14783_consen 1 NVTALCLFDFDGDGENELLVGSDDFEIRVFKGD------------EIVAEIT-ETDKVTSLCSLG--GGRFAYALANGTV 65 (111)
T ss_pred CeeEEEEEecCCCCcceEEEecCCcEEEEEeCC------------cEEEEEe-cccceEEEEEcC--CCEEEEEecCCEE
Confidence 4778888764322 689999999999999877 3355555 356777777665 3679999999999
Q ss_pred EEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEE---cCCCCcEEEEEeCCCcEE
Q 005506 173 RQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI---SSTRPHLLLVGGSDAFAR 241 (693)
Q Consensus 173 ~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~---sp~~~~~Latgs~Dg~Ir 241 (693)
-+|+-.. .+|...+. ..+.++.+ +.++..-|++|-.+|.|-
T Consensus 66 GvY~~~~----------------RlWRiKSK------------~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 66 GVYDRSQ----------------RLWRIKSK------------NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEeCcc----------------eeeeeccC------------CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 9998532 34433322 12444444 444445799999999874
No 444
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.93 E-value=0.0031 Score=60.32 Aligned_cols=72 Identities=11% Similarity=0.046 Sum_probs=63.6
Q ss_pred hhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCC---cchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchh
Q 005506 403 RHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS---FRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 477 (693)
Q Consensus 403 ~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~---~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~ 477 (693)
.+..|.++|..|+.. |++.+|+.-+.+|+++.|+. ..+++.+|.++..+|++++|++.+++++.+.|.+...
T Consensus 34 ~a~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 108 (172)
T PRK02603 34 EAFVYYRDGMSAQAD---GEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSA 108 (172)
T ss_pred hHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH
Confidence 366889999999885 56999999999999988764 3689999999999999999999999999999987654
No 445
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.91 E-value=0.15 Score=51.64 Aligned_cols=184 Identities=15% Similarity=0.154 Sum_probs=118.5
Q ss_pred eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcC
Q 005506 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125 (693)
Q Consensus 46 l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~ 125 (693)
+.|-+..|.+|.|+|+.+.|++..+...-.||=..+|+.+.++....-...-.|.|... ++++++--.++.+.++.+.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~--n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGG--NQFVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecC--CEEEEEehhcceEEEEEEc
Confidence 45556669999999999988888888888888778899999885444445667888876 5777777788999988887
Q ss_pred CCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCce
Q 005506 126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 205 (693)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (693)
............-++..........-.++|.| ..+.|+.+-+-.-+.||.+......- ..+ ...+...
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l---~~~-----~~~~~~~--- 226 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSL---SVH-----ASLDPTA--- 226 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCccc---ccc-----cccCccc---
Confidence 54221110000011222222256678899999 44666677777778887766432110 000 0000000
Q ss_pred eeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCC
Q 005506 206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (693)
Q Consensus 206 ~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~ 247 (693)
...-....|.++.|++..+++|+.+..++.+.-.|+.-
T Consensus 227 ----~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 227 ----DRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred ----ccceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 00001235778899988788888888888888888763
No 446
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.90 E-value=0.01 Score=66.89 Aligned_cols=71 Identities=13% Similarity=0.258 Sum_probs=61.9
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCC
Q 005506 53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 126 (693)
Q Consensus 53 V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~ 126 (693)
+++|+|+|..-.||+|-.-|.+.+|...+.+. +++...|+.+|..+.|+|+ |..++|+..-|.|.+|....
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~-htv~~th~a~i~~l~wS~~--G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET-HTVVETHPAPIQGLDWSHD--GTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCcee-eeeccCCCCCceeEEecCC--CCeEEEcCCCceeEEEEeee
Confidence 56799999999999999999999999876544 4444789999999999999 79999999999999998763
No 447
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.88 E-value=0.06 Score=62.73 Aligned_cols=207 Identities=14% Similarity=0.164 Sum_probs=118.8
Q ss_pred EeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCC-----CCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCcee
Q 005506 68 GSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS-----DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSAL 142 (693)
Q Consensus 68 gs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~-----~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~ 142 (693)
......|.-.|+++|+.+.........+|.+ |.|++. +.-.+.|-.+..+..||.+....+.. ....+.
T Consensus 500 ~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v----~~~~k~ 573 (794)
T PF08553_consen 500 PNNPNKLYKMDLERGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLV----DSQSKQ 573 (794)
T ss_pred CCCCCceEEEecCCCcEEEEeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCCCcee----eccccc
Confidence 3456778889999999999885443344554 444321 23456677789999999996431110 001112
Q ss_pred eccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEE
Q 005506 143 YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCD 222 (693)
Q Consensus 143 ~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~ 222 (693)
+ .......|++.+. .-.||.|+.+|.||+||- .+.. .-...|+-..+|..|.
T Consensus 574 Y-~~~~~Fs~~aTt~--~G~iavgs~~G~IRLyd~-~g~~------------------------AKT~lp~lG~pI~~iD 625 (794)
T PF08553_consen 574 Y-SSKNNFSCFATTE--DGYIAVGSNKGDIRLYDR-LGKR------------------------AKTALPGLGDPIIGID 625 (794)
T ss_pred c-ccCCCceEEEecC--CceEEEEeCCCcEEeecc-cchh------------------------hhhcCCCCCCCeeEEE
Confidence 2 2344567777765 347889999999999993 2211 1112234456899999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEecC--CCCCC------cccccCCCCCCcccccccCccccC---CCCccceEEEEEcC--
Q 005506 223 ISSTRPHLLLVGGSDAFARLYDRR--MLPPL------TSCQKRMSPPPCVNYFCPMHLSEH---GRSSLHLTHVTFSP-- 289 (693)
Q Consensus 223 ~sp~~~~~Latgs~Dg~IriwD~r--~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~V~~v~fsp-- 289 (693)
++.+ |+++++.| +.++.|++.. .++.. ..+.....|.+-...+.|.|...- .......+...|+-
T Consensus 626 vt~D-GkwilaTc-~tyLlLi~t~~~~g~~~g~~GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a~Fnt~~ 703 (794)
T PF08553_consen 626 VTAD-GKWILATC-KTYLLLIDTLIKDGKNSGKLGFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPAKFNTGI 703 (794)
T ss_pred ecCC-CcEEEEee-cceEEEEEEeeecCCccCccccccccCccCCCCCeEEecCHHHHHHHHhccCCCceeeceEEecCC
Confidence 9998 56665544 5678888864 22111 122222233333334444443211 11112345666763
Q ss_pred C-CCEEEEEecCCcEEEEECCC
Q 005506 290 N-GEEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 290 d-g~~L~sgs~Dg~V~lwdl~~ 310 (693)
+ ....++++.+..+.+||+..
T Consensus 704 ~~~E~~IvtstG~f~v~Wnf~k 725 (794)
T PF08553_consen 704 GKQETSIVTSTGPFVVTWNFKK 725 (794)
T ss_pred CCccceEEEeccCEEEEEEHHH
Confidence 1 23455566677999999876
No 448
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.85 E-value=0.0046 Score=70.57 Aligned_cols=102 Identities=12% Similarity=0.021 Sum_probs=87.0
Q ss_pred chhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCC
Q 005506 361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS 440 (693)
Q Consensus 361 ~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~ 440 (693)
+....+.+.+..+...|+ |..|+.+++.++..-+.. ...+|.+.|-||+.++. +..|+.-..++|.++|.+
T Consensus 412 d~~dL~~d~a~al~~~~~-~~~Al~~l~~i~~~~~~~-----~~~vw~~~a~c~~~l~e---~e~A~e~y~kvl~~~p~~ 482 (895)
T KOG2076|consen 412 DDVDLYLDLADALTNIGK-YKEALRLLSPITNREGYQ-----NAFVWYKLARCYMELGE---YEEAIEFYEKVLILAPDN 482 (895)
T ss_pred hhHHHHHHHHHHHHhccc-HHHHHHHHHHHhcCcccc-----chhhhHHHHHHHHHHhh---HHHHHHHHHHHHhcCCCc
Confidence 344566777777888899 999999999988754332 25689999999999876 999999999999999999
Q ss_pred cchhhhHHHHHHHhccHHHHHHHHHHHcccC
Q 005506 441 FRAHLYMSEALEQLCKYKEALDFAIAAQCLD 471 (693)
Q Consensus 441 ~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~ 471 (693)
.-|..+++..+.++|++++|++.+....--+
T Consensus 483 ~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 483 LDARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred hhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 9999999999999999999999998766334
No 449
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.84 E-value=0.00098 Score=44.85 Aligned_cols=33 Identities=12% Similarity=0.012 Sum_probs=29.1
Q ss_pred hhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCC
Q 005506 405 ECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS 440 (693)
Q Consensus 405 ~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~ 440 (693)
.+|.|+|.+|++++. +.+|+..|.+||+++|++
T Consensus 2 ~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGD---YEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT----HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCC---chHHHHHHHHHHHHCcCC
Confidence 578999999999654 999999999999999974
No 450
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.84 E-value=0.096 Score=52.48 Aligned_cols=192 Identities=18% Similarity=0.184 Sum_probs=104.5
Q ss_pred CCCcEEEEECCCCcEEEEeccCC-CcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCC
Q 005506 70 DDTHINVWSYSSRKLLHSIETGH-SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR 148 (693)
Q Consensus 70 ~Dg~I~IWd~~~~~~~~~l~~~h-~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~ 148 (693)
++|+|..||..+++.+-....+. .....+... +. +..+++++.++.|..||..++ +.+..+.. ..
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~~--~~~v~~~~~~~~l~~~d~~tG----------~~~W~~~~-~~ 66 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAV-PD--GGRVYVASGDGNLYALDAKTG----------KVLWRFDL-PG 66 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-EE--TTEEEEEETTSEEEEEETTTS----------EEEEEEEC-SS
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEE-Ee--CCEEEEEcCCCEEEEEECCCC----------CEEEEeec-cc
Confidence 47899999999999888773321 122222222 23 467777789999999999865 33444443 22
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEec-cCCceeeecCCCCCccceEEEEEcCCC
Q 005506 149 RVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL-RCGAKRSLADPPKQTLSLKSCDISSTR 227 (693)
Q Consensus 149 ~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~l~~~~~~~~~v~sl~~sp~~ 227 (693)
.+...... .+..++.++.++.|+.+|..+++ .+|.. .... ............+.
T Consensus 67 ~~~~~~~~--~~~~v~v~~~~~~l~~~d~~tG~--------------~~W~~~~~~~------~~~~~~~~~~~~~~--- 121 (238)
T PF13360_consen 67 PISGAPVV--DGGRVYVGTSDGSLYALDAKTGK--------------VLWSIYLTSS------PPAGVRSSSSPAVD--- 121 (238)
T ss_dssp CGGSGEEE--ETTEEEEEETTSEEEEEETTTSC--------------EEEEEEE-SS------CTCSTB--SEEEEE---
T ss_pred cccceeee--cccccccccceeeeEecccCCcc--------------eeeeeccccc------cccccccccCceEe---
Confidence 21111122 23455566688899999988875 34431 1110 00000111122222
Q ss_pred CcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEE
Q 005506 228 PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMD 307 (693)
Q Consensus 228 ~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwd 307 (693)
+..++++..++.|..+|+.+++.+........+... .+ +....+..-....++ .++++..++.+.-+|
T Consensus 122 ~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~--~~---------~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d 189 (238)
T PF13360_consen 122 GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSS--PI---------SSFSDINGSPVISDG-RVYVSSGDGRVVAVD 189 (238)
T ss_dssp TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS----E---------EEETTEEEEEECCTT-EEEEECCTSSEEEEE
T ss_pred cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCc--ce---------eeecccccceEEECC-EEEEEcCCCeEEEEE
Confidence 457888888999999999998765444321111000 00 000012222222344 777777777644449
Q ss_pred CCCCC
Q 005506 308 VNHAG 312 (693)
Q Consensus 308 l~~~~ 312 (693)
+.+++
T Consensus 190 ~~tg~ 194 (238)
T PF13360_consen 190 LATGE 194 (238)
T ss_dssp TTTTE
T ss_pred CCCCC
Confidence 99965
No 451
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.82 E-value=0.0076 Score=64.70 Aligned_cols=109 Identities=13% Similarity=-0.018 Sum_probs=84.7
Q ss_pred hhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCC-------------------------------CcchhhhhhhH
Q 005506 362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIG-------------------------------PMLRHECLCIR 410 (693)
Q Consensus 362 ~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~-------------------------------~~~~~~~~~NR 410 (693)
..+....++...+..|+ +..|+..+.++++..|.+.. .......+.+.
T Consensus 42 ~~e~~~~~a~~~~~~g~-~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 120 (355)
T cd05804 42 ERERAHVEALSAWIAGD-LPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGML 120 (355)
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHH
Confidence 34445566777888888 99999999888887664310 00001233466
Q ss_pred HHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCC
Q 005506 411 AALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSN 474 (693)
Q Consensus 411 A~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~ 474 (693)
|.+++.. |++..|+.-+.++++++|++.-+++.+|.++..+|++++|...+++++...|.+
T Consensus 121 a~~~~~~---G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~ 181 (355)
T cd05804 121 AFGLEEA---GQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS 181 (355)
T ss_pred HHHHHHc---CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC
Confidence 6677775 559999999999999999999999999999999999999999999999988754
No 452
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.82 E-value=0.002 Score=67.75 Aligned_cols=109 Identities=16% Similarity=0.106 Sum_probs=63.8
Q ss_pred hhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcc
Q 005506 363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR 442 (693)
Q Consensus 363 a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~K 442 (693)
+..+..+||-.|..|+ |..|.+.|.+||.-...+ ...+.|-+..+-+++. ..+|+.-..+.-.+=-+++.
T Consensus 490 ~~a~~nkgn~~f~ngd-~dka~~~ykeal~ndasc------~ealfniglt~e~~~~---ldeald~f~klh~il~nn~e 559 (840)
T KOG2003|consen 490 AAALTNKGNIAFANGD-LDKAAEFYKEALNNDASC------TEALFNIGLTAEALGN---LDEALDCFLKLHAILLNNAE 559 (840)
T ss_pred HHHhhcCCceeeecCc-HHHHHHHHHHHHcCchHH------HHHHHHhcccHHHhcC---HHHHHHHHHHHHHHHHhhHH
Confidence 4556778999999999 999999999999754332 2233444444444332 44444433333223334555
Q ss_pred hhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHH
Q 005506 443 AHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKV 481 (693)
Q Consensus 443 A~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~ 481 (693)
.++..|..|+.|++..+|++.+.++..+-|.++.+...+
T Consensus 560 vl~qianiye~led~aqaie~~~q~~slip~dp~ilskl 598 (840)
T KOG2003|consen 560 VLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKL 598 (840)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHH
Confidence 555555555555555555555555555555555443333
No 453
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.81 E-value=0.066 Score=46.48 Aligned_cols=101 Identities=18% Similarity=0.178 Sum_probs=71.2
Q ss_pred EEEEEECC---CC-CEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCC
Q 005506 53 VNAISWNS---KG-SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 128 (693)
Q Consensus 53 V~~l~~s~---~g-~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~ 128 (693)
|++|++.. +| +.|+.||+|..|+||+-. ..+..+ .-.+.|++++-... ..|+.+-.+|+|-+|+-...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei--~e~~~v~~L~~~~~---~~F~Y~l~NGTVGvY~~~~R- 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEI--TETDKVTSLCSLGG---GRFAYALANGTVGVYDRSQR- 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEE--ecccceEEEEEcCC---CEEEEEecCCEEEEEeCcce-
Confidence 66777665 33 589999999999999944 567766 34567888888776 68999999999999987632
Q ss_pred CCCCCCCCCCCceeeccCCCCeEEEEEecCC---CcEEEEEeCCCcEE
Q 005506 129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGN---PHVVWSASEDGTLR 173 (693)
Q Consensus 129 ~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~---~~~l~Sgs~Dg~V~ 173 (693)
+...+. ...+.++++..-+ -.-|++|-.+|.|-
T Consensus 74 -----------lWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 74 -----------LWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -----------eeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 333332 3347777665422 23677888888763
No 454
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=96.77 E-value=0.0037 Score=64.91 Aligned_cols=106 Identities=15% Similarity=0.046 Sum_probs=78.9
Q ss_pred HhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHH
Q 005506 371 RNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEA 450 (693)
Q Consensus 371 n~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~KA~~r~a~a 450 (693)
.-....++ |..+.....++....+. +-.+.+|.-+|.++.+. |++.+|+++..+||+++|++..+....+..
T Consensus 118 ~~~~~~~~-~~~~~~~l~~~~~~~~~----~~~~~~~~~~a~~~~~~---G~~~~A~~~~~~al~~~P~~~~~~~~l~~~ 189 (280)
T PF13429_consen 118 QLYYRLGD-YDEAEELLEKLEELPAA----PDSARFWLALAEIYEQL---GDPDKALRDYRKALELDPDDPDARNALAWL 189 (280)
T ss_dssp H-HHHTT--HHHHHHHHHHHHH-T-------T-HHHHHHHHHHHHHC---CHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHhH-HHHHHHHHHHHHhccCC----CCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 34455677 98888888887753321 11267889999999995 559999999999999999999999999999
Q ss_pred HHHhccHHHHHHHHHHHcccCCCCchhHHHHHHH
Q 005506 451 LEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENI 484 (693)
Q Consensus 451 l~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l 484 (693)
+..+|++++|.+.++...+..|.+......+-.+
T Consensus 190 li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~ 223 (280)
T PF13429_consen 190 LIDMGDYDEAREALKRLLKAAPDDPDLWDALAAA 223 (280)
T ss_dssp HCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHH
T ss_pred HHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 9999999999999988888877776554444333
No 455
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.71 E-value=0.013 Score=57.85 Aligned_cols=106 Identities=15% Similarity=0.008 Sum_probs=84.2
Q ss_pred hHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHh-ccccCcHHHHHHhHhHhhccCCCCcch
Q 005506 365 MLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLK-RKWKNDAQMAIRDCYNARRIDSSSFRA 443 (693)
Q Consensus 365 ~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk-~~~~~d~~~Al~Dc~~Al~l~p~~~KA 443 (693)
..+-+|-..=..|. |.+|++.|+..|+..|.+ .+.|- |-.+.+| ++. .-.||+..+.=|+.-+++..|
T Consensus 88 V~~lkam~lEa~~~-~~~A~e~y~~lL~ddpt~------~v~~K-RKlAilka~GK---~l~aIk~ln~YL~~F~~D~EA 156 (289)
T KOG3060|consen 88 VGKLKAMLLEATGN-YKEAIEYYESLLEDDPTD------TVIRK-RKLAILKAQGK---NLEAIKELNEYLDKFMNDQEA 156 (289)
T ss_pred HHHHHHHHHHHhhc-hhhHHHHHHHHhccCcch------hHHHH-HHHHHHHHcCC---cHHHHHHHHHHHHHhcCcHHH
Confidence 33444555555678 999999999999988766 45555 5455555 443 678999999999999999999
Q ss_pred hhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHH
Q 005506 444 HLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKV 481 (693)
Q Consensus 444 ~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~ 481 (693)
+..+|..|+.+|.|+.|.=|++.++.+.|-+.-.-..+
T Consensus 157 W~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rl 194 (289)
T KOG3060|consen 157 WHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRL 194 (289)
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 99999999999999999999999999999986544333
No 456
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.68 E-value=0.0023 Score=46.07 Aligned_cols=37 Identities=27% Similarity=0.249 Sum_probs=33.1
Q ss_pred chhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhH
Q 005506 442 RAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA 478 (693)
Q Consensus 442 KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~ 478 (693)
.+++.+|++|..+|++++|.+.|+++++++|+|..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~ 38 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAW 38 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 4788899999999999999999999999999987754
No 457
>PRK14574 hmsH outer membrane protein; Provisional
Probab=96.66 E-value=0.017 Score=68.50 Aligned_cols=107 Identities=7% Similarity=-0.017 Sum_probs=95.6
Q ss_pred hhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCc
Q 005506 362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSF 441 (693)
Q Consensus 362 ~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~ 441 (693)
..+-....+.-..-.|+ +.+|.+.+.+.+...|.+ ..+..+.|-.+..|+| +..|..-...|+.++|.+.
T Consensus 415 ~~~~~~l~a~~~~~~gd-l~~Ae~~le~l~~~aP~n------~~l~~~~A~v~~~Rg~---p~~A~~~~k~a~~l~P~~~ 484 (822)
T PRK14574 415 WIEGQTLLVQSLVALND-LPTAQKKLEDLSSTAPAN------QNLRIALASIYLARDL---PRKAEQELKAVESLAPRSL 484 (822)
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCC---HHHHHHHHHHHhhhCCccH
Confidence 33444445566677888 999999999999999988 7789999999999999 9999999999999999999
Q ss_pred chhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhH
Q 005506 442 RAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA 478 (693)
Q Consensus 442 KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~ 478 (693)
-+.+-++.+++.|+++.+|....++++.+.|+++.++
T Consensus 485 ~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 485 ILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 9999999999999999999999999999999998654
No 458
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.0082 Score=65.95 Aligned_cols=73 Identities=21% Similarity=0.345 Sum_probs=64.9
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceE-EEEEeeCCCCCEEEEEeCCCcEEEEEcCCC
Q 005506 51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVF-CTKFVPETSDELVVSGAGDAEVRLFNLSRF 127 (693)
Q Consensus 51 ~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~-sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~ 127 (693)
-.|.-+.|+|.-.++|++..+|.|.+..+. .+.+.++ .-|..+++ +++|.|+ |++||.|-.||+|++.|+..+
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwti-p~p~~~v~~sL~W~~D--GkllaVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTI-PIPGENVTASLCWRPD--GKLLAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEec-cCCCCccceeeeecCC--CCEEEEEecCCeEEEEEccCC
Confidence 458889999999999999999999999987 7788888 44666677 9999999 799999999999999999965
No 459
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.64 E-value=0.012 Score=67.70 Aligned_cols=122 Identities=8% Similarity=-0.035 Sum_probs=102.4
Q ss_pred cchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCC
Q 005506 360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSS 439 (693)
Q Consensus 360 ~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~ 439 (693)
......+.-.+|.+|-.++ |..++.++..||..... +.+.+.-|.+.|-+|..+ |||..|-.-..+|++.+|+
T Consensus 267 ~~nP~~l~~LAn~fyfK~d-y~~v~~la~~ai~~t~~---~~~~aes~Y~~gRs~Ha~---Gd~ekA~~yY~~s~k~~~d 339 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKD-YERVWHLAEHAIKNTEN---KSIKAESFYQLGRSYHAQ---GDFEKAFKYYMESLKADND 339 (1018)
T ss_pred CCCcHHHHHHHHHHhhccc-HHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHccCCC
Confidence 3344556677899999999 99999999999986632 344566688999999995 6699999999999999998
Q ss_pred C-cchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHHHHHHH
Q 005506 440 S-FRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHI 488 (693)
Q Consensus 440 ~-~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l~~~i 488 (693)
+ +-+++++||.++..|++++|..+|.++++..|++.+..+.+-.|....
T Consensus 340 ~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~ 389 (1018)
T KOG2002|consen 340 NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHS 389 (1018)
T ss_pred CccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhh
Confidence 8 999999999999999999999999999999999977666555555444
No 460
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.63 E-value=0.017 Score=51.49 Aligned_cols=95 Identities=22% Similarity=0.125 Sum_probs=76.5
Q ss_pred HHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCC---Ccch
Q 005506 367 VEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSS---SFRA 443 (693)
Q Consensus 367 k~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~---~~KA 443 (693)
.+.+.-.-..|+ ..+||..|.++|..... .+.+...+.+.|.+|..++. +.+|+.-..++++-.|+ +...
T Consensus 5 ~~~A~a~d~~G~-~~~Ai~~Y~~Al~~gL~---~~~~~~a~i~lastlr~LG~---~deA~~~L~~~~~~~p~~~~~~~l 77 (120)
T PF12688_consen 5 YELAWAHDSLGR-EEEAIPLYRRALAAGLS---GADRRRALIQLASTLRNLGR---YDEALALLEEALEEFPDDELNAAL 77 (120)
T ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHcCCC---chHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHCCCccccHHH
Confidence 345555667789 99999999999996533 24456678889999988654 99999999999988787 6666
Q ss_pred hhhHHHHHHHhccHHHHHHHHHHHc
Q 005506 444 HLYMSEALEQLCKYKEALDFAIAAQ 468 (693)
Q Consensus 444 ~~r~a~al~~l~~~~eA~~~~~~~~ 468 (693)
..-.|.+|..+|+++||++.+-.++
T Consensus 78 ~~f~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 78 RVFLALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6778999999999999999887665
No 461
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.59 E-value=0.081 Score=57.50 Aligned_cols=220 Identities=14% Similarity=0.138 Sum_probs=112.2
Q ss_pred hhhhcccceeEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEec-------cCCCcceEEEEEee---
Q 005506 34 SSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-------TGHSANVFCTKFVP--- 103 (693)
Q Consensus 34 ~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~-------~~h~~~I~sv~f~p--- 103 (693)
..+.+.+.+...++...++|++++.|. =-++|.|..+|.+.|.|+.....+..-. ......|+++.|..
T Consensus 70 ~~~~~gf~P~~l~~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~ 148 (395)
T PF08596_consen 70 PSLKEGFLPLTLLDAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTL 148 (395)
T ss_dssp TT-SEEEEEEEEE---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-
T ss_pred cccccccCchhheeccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEec
Confidence 345567888888888899999999984 4489999999999999997766655421 12345688898873
Q ss_pred CCCC---CEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEe-cCC--------------------
Q 005506 104 ETSD---ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE-VGN-------------------- 159 (693)
Q Consensus 104 ~~~~---~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~s-p~~-------------------- 159 (693)
..++ -.++.|...|.+.+|.+--...... ..........+.+.|..|..- .+.
T Consensus 149 ~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f---~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i 225 (395)
T PF08596_consen 149 GGDGYSSICLLVGTNSGNVLTFKILPSSNGRF---SVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISI 225 (395)
T ss_dssp TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-E---EEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT---
T ss_pred CCCcccceEEEEEeCCCCEEEEEEecCCCCce---EEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCc
Confidence 2112 3688889999999998862111110 001112222455666665532 110
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEc----CCCCcEEEEEe
Q 005506 160 PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS----STRPHLLLVGG 235 (693)
Q Consensus 160 ~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~s----p~~~~~Latgs 235 (693)
+.+++. ..+..+|++..-+.+.. ...+ ........+.+- -..+..|++-.
T Consensus 226 ~g~vVv-vSe~~irv~~~~~~k~~-----------~K~~--------------~~~~~~~~~~vv~~~~~~~~~~Lv~l~ 279 (395)
T PF08596_consen 226 PGYVVV-VSESDIRVFKPPKSKGA-----------HKSF--------------DDPFLCSSASVVPTISRNGGYCLVCLF 279 (395)
T ss_dssp -EEEEE-E-SSEEEEE-TT---EE-----------EEE---------------SS-EEEEEEEEEEEE-EEEEEEEEEEE
T ss_pred CcEEEE-EcccceEEEeCCCCccc-----------ceee--------------ccccccceEEEEeecccCCceEEEEEE
Confidence 123333 33567777776554311 1111 111222233332 11356788889
Q ss_pred CCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecC
Q 005506 236 SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG 300 (693)
Q Consensus 236 ~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~D 300 (693)
.+|.|++|.+..++.+.....+.. . +. ..+...+|+++|..++..+..
T Consensus 280 ~~G~i~i~SLP~Lkei~~~~l~~~----------~------d~-~~~~~ssis~~Gdi~~~~gps 327 (395)
T PF08596_consen 280 NNGSIRIYSLPSLKEIKSVSLPPP----------L------DS-RRLSSSSISRNGDIFYWTGPS 327 (395)
T ss_dssp TTSEEEEEETTT--EEEEEE-SS-------------------H-HHHTT-EE-TTS-EEEE-SSS
T ss_pred CCCcEEEEECCCchHhhcccCCCc----------c------cc-ccccccEECCCCCEEEEeCcc
Confidence 999999999998876654422100 0 00 023456779999977766543
No 462
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.54 E-value=0.017 Score=61.97 Aligned_cols=99 Identities=16% Similarity=-0.013 Sum_probs=82.2
Q ss_pred hHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCc---
Q 005506 365 MLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSF--- 441 (693)
Q Consensus 365 ~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~--- 441 (693)
.+...|.-....|+ |.+|+..|.++++..|.. ..++.+.|.+|+.. |++.+|+.-+.+++++.|...
T Consensus 116 ~~~~~a~~~~~~G~-~~~A~~~~~~al~~~p~~------~~~~~~la~i~~~~---g~~~eA~~~l~~~l~~~~~~~~~~ 185 (355)
T cd05804 116 LLGMLAFGLEEAGQ-YDRAEEAARRALELNPDD------AWAVHAVAHVLEMQ---GRFKEGIAFMESWRDTWDCSSMLR 185 (355)
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCC------cHHHHHHHHHHHHc---CCHHHHHHHHHhhhhccCCCcchh
Confidence 33445667788999 999999999999998876 56778889999885 559999999999999987533
Q ss_pred -chhhhHHHHHHHhccHHHHHHHHHHHcccCCC
Q 005506 442 -RAHLYMSEALEQLCKYKEALDFAIAAQCLDPS 473 (693)
Q Consensus 442 -KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~ 473 (693)
..++.+|.++..+|++++|+..+++++...|.
T Consensus 186 ~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~ 218 (355)
T cd05804 186 GHNWWHLALFYLERGDYEAALAIYDTHIAPSAE 218 (355)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhccccC
Confidence 24567999999999999999999999876663
No 463
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.49 E-value=0.0061 Score=40.49 Aligned_cols=38 Identities=26% Similarity=0.640 Sum_probs=32.3
Q ss_pred cEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEE
Q 005506 83 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 123 (693)
Q Consensus 83 ~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwd 123 (693)
+++..+ ..|...|.++.|.|. +.++++++.|+.|++|+
T Consensus 3 ~~~~~~-~~~~~~i~~~~~~~~--~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTL-KGHTGPVTSVAFSPD--GKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEE-EecCCceeEEEECCC--CCEEEEecCCCeEEEcC
Confidence 445556 578889999999998 58999999999999996
No 464
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.48 E-value=0.006 Score=56.52 Aligned_cols=58 Identities=16% Similarity=-0.006 Sum_probs=54.9
Q ss_pred cCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchh
Q 005506 420 KNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 477 (693)
Q Consensus 420 ~~d~~~Al~Dc~~Al~l~p~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~ 477 (693)
.|++.+|.+-......+||.+...+|.+|.|+..+|+|.+|+++|..+..++|+++..
T Consensus 48 ~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 48 VKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 3679999999999999999999999999999999999999999999999999998754
No 465
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.47 E-value=0.022 Score=59.26 Aligned_cols=123 Identities=20% Similarity=0.098 Sum_probs=88.5
Q ss_pred hhhHHHHHHhhhhc-CCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhcc--CCC
Q 005506 363 CRMLVEIARNSLEE-GKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRI--DSS 439 (693)
Q Consensus 363 a~~lk~~gn~~~~~-g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l--~p~ 439 (693)
+..+...|.-+... ++ +..|++.|.+|++.......+.....++.+-|..+.+.+ +|..|+.-..++... +.+
T Consensus 114 A~~~~~lA~~ye~~~~d-~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~---~y~~A~~~~e~~~~~~l~~~ 189 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGD-YEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLG---RYEEAIEIYEEVAKKCLENN 189 (282)
T ss_dssp HHHHHHHHHHHCCTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHTCCCHC
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHhhccc
Confidence 44555556655566 67 999999999999987765444444568889999999865 599999999988753 211
Q ss_pred ----Ccc-hhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHHHHHHHHH
Q 005506 440 ----SFR-AHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAA 490 (693)
Q Consensus 440 ----~~K-A~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l~~~i~~ 490 (693)
++| .+++.+.|++.+|++..|.+.+++....+|..... .+.+-+..-|..
T Consensus 190 l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s-~E~~~~~~l~~A 244 (282)
T PF14938_consen 190 LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASS-REYKFLEDLLEA 244 (282)
T ss_dssp TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS-HHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc-HHHHHHHHHHHH
Confidence 244 45788899999999999999999999999988764 345544444433
No 466
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.013 Score=61.68 Aligned_cols=88 Identities=22% Similarity=0.218 Sum_probs=67.9
Q ss_pred hhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHHH
Q 005506 372 NSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEAL 451 (693)
Q Consensus 372 ~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~KA~~r~a~al 451 (693)
-+++-.. |..||+.++++|...|++ .-.+..|+.||+.+ |+|..|..|..+|++++|+|--|.--++.+.
T Consensus 266 c~lKl~~-~~~Ai~~c~kvLe~~~~N------~KALyRrG~A~l~~---~e~~~A~~df~ka~k~~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 266 CYLKLKE-YKEAIESCNKVLELDPNN------VKALYRRGQALLAL---GEYDLARDDFQKALKLEPSNKAARAELIKLK 335 (397)
T ss_pred HHHhhhh-HHHHHHHHHHHHhcCCCc------hhHHHHHHHHHHhh---ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3456666 999999999999998877 45567899999995 5699999999999999999965666666666
Q ss_pred HHhccHHHH-HHHHHHHcc
Q 005506 452 EQLCKYKEA-LDFAIAAQC 469 (693)
Q Consensus 452 ~~l~~~~eA-~~~~~~~~~ 469 (693)
....++.+. .+.|...+.
T Consensus 336 ~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 666666554 445554443
No 467
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.031 Score=58.78 Aligned_cols=110 Identities=11% Similarity=-0.084 Sum_probs=76.2
Q ss_pred CcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccc-------------------
Q 005506 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKW------------------- 419 (693)
Q Consensus 359 ~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~------------------- 419 (693)
.+...+.+.-+|+-..+.++ .++|+-.+..|+.+.|.. ..+|-..--|||..+.
T Consensus 330 ~~r~~~alilKG~lL~~~~R-~~~A~IaFR~Aq~Lap~r------L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA 402 (564)
T KOG1174|consen 330 EPRNHEALILKGRLLIALER-HTQAVIAFRTAQMLAPYR------LEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSA 402 (564)
T ss_pred CcccchHHHhccHHHHhccc-hHHHHHHHHHHHhcchhh------HHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcch
Confidence 33445667778888888888 888888888888877643 2233333333332211
Q ss_pred -----cC---------cHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCc
Q 005506 420 -----KN---------DAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS 475 (693)
Q Consensus 420 -----~~---------d~~~Al~Dc~~Al~l~p~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~ 475 (693)
.| --++|-.-..++|+++|.+.+|..-+|.-+..-|+++.++..+++.+..+|+..
T Consensus 403 ~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~ 472 (564)
T KOG1174|consen 403 RSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN 472 (564)
T ss_pred hhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccH
Confidence 01 023456667788999999999999999888888888888888888888887763
No 468
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.44 E-value=0.023 Score=67.03 Aligned_cols=108 Identities=22% Similarity=0.174 Sum_probs=80.4
Q ss_pred cchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCC
Q 005506 360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSS 439 (693)
Q Consensus 360 ~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~ 439 (693)
+...+.+......+...++ |..|+..+.++++..|.. ..+|.-.+..|++.+..+|+. +- .++.+-+.
T Consensus 28 p~n~~a~~~Li~~~~~~~~-~deai~i~~~~l~~~P~~------i~~yy~~G~l~~q~~~~~~~~--lv---~~l~~~~~ 95 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENL-TDEAKDICEEHLKEHKKS------ISALYISGILSLSRRPLNDSN--LL---NLIDSFSQ 95 (906)
T ss_pred cchHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCcc------eehHHHHHHHHHhhcchhhhh--hh---hhhhhccc
Confidence 3445555666666667788 999999999999998876 456666666777665533221 21 44544444
Q ss_pred Cc-------------------chhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHH
Q 005506 440 SF-------------------RAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAE 479 (693)
Q Consensus 440 ~~-------------------KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~ 479 (693)
+. .|+|.+|.||..+|+.++|.+.++++++++|+|+.+..
T Consensus 96 ~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLN 154 (906)
T PRK14720 96 NLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVK 154 (906)
T ss_pred ccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHH
Confidence 44 89999999999999999999999999999999976543
No 469
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.43 E-value=0.019 Score=57.11 Aligned_cols=59 Identities=24% Similarity=0.278 Sum_probs=55.7
Q ss_pred cCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhH
Q 005506 420 KNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA 478 (693)
Q Consensus 420 ~~d~~~Al~Dc~~Al~l~p~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~ 478 (693)
.|+|..|+.-..+|.+++|++.+++--+|-||.++|++++|...|.+++++.|.++.+.
T Consensus 113 ~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~ 171 (257)
T COG5010 113 NGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIA 171 (257)
T ss_pred hcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhh
Confidence 57799999999999999999999999999999999999999999999999999887653
No 470
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.34 E-value=0.7 Score=55.07 Aligned_cols=211 Identities=9% Similarity=0.064 Sum_probs=117.3
Q ss_pred CcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcE
Q 005506 93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTL 172 (693)
Q Consensus 93 ~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V 172 (693)
.+.|.++.|..+ +.-++.+...|.|.+.|..+. .......-...|.+++|+| +..+++-.+..++|
T Consensus 68 d~~i~s~~fl~d--~~~i~v~~~~G~iilvd~et~-----------~~eivg~vd~GI~aaswS~-Dee~l~liT~~~tl 133 (1265)
T KOG1920|consen 68 DDEIVSVQFLAD--TNSICVITALGDIILVDPETL-----------ELEIVGNVDNGISAASWSP-DEELLALITGRQTL 133 (1265)
T ss_pred CcceEEEEEecc--cceEEEEecCCcEEEEccccc-----------ceeeeeeccCceEEEeecC-CCcEEEEEeCCcEE
Confidence 368999999988 467777888899999988753 2333333467899999999 66788777777776
Q ss_pred EEEeC----CCCCCCCCCCCCCcccceEEEeccCCcee-----eec-CCC---------CCccceEEEEEcCCCCcEEEE
Q 005506 173 RQHDF----RQGSSCPPAGSSHQECRNILLDLRCGAKR-----SLA-DPP---------KQTLSLKSCDISSTRPHLLLV 233 (693)
Q Consensus 173 ~lwDl----r~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~l~-~~~---------~~~~~v~sl~~sp~~~~~Lat 233 (693)
.+-+- -..++...-.........+-|.-.+.... ... ... .....=++|+|-.+ |.++|+
T Consensus 134 l~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgD-g~~fAV 212 (1265)
T KOG1920|consen 134 LFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGD-GEYFAV 212 (1265)
T ss_pred EEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccC-CcEEEE
Confidence 54321 11111100000011112222221110000 000 000 01112246888886 788888
Q ss_pred Ee----CC-CcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEec---CCcEEE
Q 005506 234 GG----SD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS---GEHVYL 305 (693)
Q Consensus 234 gs----~D-g~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~---Dg~V~l 305 (693)
.. .+ ..|++||.. +..-. . ..| ...-=.+++|-|.|..+++-.. |+.|.+
T Consensus 213 s~~~~~~~~RkirV~drE-g~Lns-~---se~-----------------~~~l~~~LsWkPsgs~iA~iq~~~sd~~Ivf 270 (1265)
T KOG1920|consen 213 SFVESETGTRKIRVYDRE-GALNS-T---SEP-----------------VEGLQHSLSWKPSGSLIAAIQCKTSDSDIVF 270 (1265)
T ss_pred EEEeccCCceeEEEeccc-chhhc-c---cCc-----------------ccccccceeecCCCCeEeeeeecCCCCcEEE
Confidence 32 23 799999987 32110 0 000 0001346999999998887654 667999
Q ss_pred EECCCCCcceEEe--ecCCC-ceeEEeccCCCcccccC
Q 005506 306 MDVNHAGGRAMRY--TVGDA-SKIMSFTPTLNGLELQP 340 (693)
Q Consensus 306 wdl~~~~~~~~~~--~~~~~-~~~~~~~p~~~g~~~~~ 340 (693)
|.-+......... ..+.. ...++|+.+..-++...
T Consensus 271 fErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~ 308 (1265)
T KOG1920|consen 271 FERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVT 308 (1265)
T ss_pred EecCCccccccccCCcccccchheeeecCCCCceeeee
Confidence 9877643322211 11222 56778887776665533
No 471
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.28 E-value=0.077 Score=53.00 Aligned_cols=126 Identities=11% Similarity=-0.013 Sum_probs=94.9
Q ss_pred chhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCC
Q 005506 361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS 440 (693)
Q Consensus 361 ~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~ 440 (693)
..+.+|-++|...++.|+ |..|+..|......+|.. +.........+-+++| .+++..|+...++=+++.|++
T Consensus 32 ~p~~~LY~~g~~~L~~gn-~~~A~~~fe~l~~~~p~s---~~~~qa~l~l~yA~Yk---~~~y~~A~~~~drFi~lyP~~ 104 (254)
T COG4105 32 LPASELYNEGLTELQKGN-YEEAIKYFEALDSRHPFS---PYSEQAQLDLAYAYYK---NGEYDLALAYIDRFIRLYPTH 104 (254)
T ss_pred CCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCC---cccHHHHHHHHHHHHh---cccHHHHHHHHHHHHHhCCCC
Confidence 347889999999999999 999999999998888765 2323445566888899 566999999999999999998
Q ss_pred cc---hhhhHHHHHHHh--------ccHHHHHHHHHHHcccCCCCc---hhHHHHHHHHHHHHHHHH
Q 005506 441 FR---AHLYMSEALEQL--------CKYKEALDFAIAAQCLDPSNS---VMAEKVENIKKHIAAAET 493 (693)
Q Consensus 441 ~K---A~~r~a~al~~l--------~~~~eA~~~~~~~~~~~p~~~---~~~~~~~~l~~~i~~~~~ 493 (693)
.. |+|-++.+++.. .--.+|...++.++...|+-. .+...+..++..+...+.
T Consensus 105 ~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em 171 (254)
T COG4105 105 PNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEM 171 (254)
T ss_pred CChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 76 556666665432 234678889999999999863 444555555555555443
No 472
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.24 E-value=0.0037 Score=41.92 Aligned_cols=32 Identities=34% Similarity=0.471 Sum_probs=29.7
Q ss_pred chhhhHHHHHHHhccHHHHHHHHHHHcccCCC
Q 005506 442 RAHLYMSEALEQLCKYKEALDFAIAAQCLDPS 473 (693)
Q Consensus 442 KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~ 473 (693)
++|+.+|+++..+|++++|+++++++++++|.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 57899999999999999999999999999884
No 473
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.23 E-value=0.37 Score=51.02 Aligned_cols=157 Identities=13% Similarity=0.160 Sum_probs=93.5
Q ss_pred cEEEEEECCC----CCEEEEEeC----------CCcEEEEECCCC-----cEEEEeccCCCcceEEEEEeeCCCCCEEEE
Q 005506 52 CVNAISWNSK----GSLLISGSD----------DTHINVWSYSSR-----KLLHSIETGHSANVFCTKFVPETSDELVVS 112 (693)
Q Consensus 52 ~V~~l~~s~~----g~~LaSgs~----------Dg~I~IWd~~~~-----~~~~~l~~~h~~~I~sv~f~p~~~~~~l~s 112 (693)
++..+.+..+ -.+|+.|.. .|.|.++++... +..........++|++++-.. +. |+.
T Consensus 28 s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~---~~-lv~ 103 (321)
T PF03178_consen 28 SLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFN---GR-LVV 103 (321)
T ss_dssp EEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEET---TE-EEE
T ss_pred EEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhC---CE-EEE
Confidence 3444555443 467887753 289999999884 222222235678899998772 34 444
Q ss_pred EeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcc
Q 005506 113 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE 192 (693)
Q Consensus 113 gs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~ 192 (693)
+. .+.|.+|++.... . ..+...+. ....|.++... +++|+.|.....|.++..+.....
T Consensus 104 ~~-g~~l~v~~l~~~~-~------l~~~~~~~-~~~~i~sl~~~---~~~I~vgD~~~sv~~~~~~~~~~~--------- 162 (321)
T PF03178_consen 104 AV-GNKLYVYDLDNSK-T------LLKKAFYD-SPFYITSLSVF---KNYILVGDAMKSVSLLRYDEENNK--------- 162 (321)
T ss_dssp EE-TTEEEEEEEETTS-S------EEEEEEE--BSSSEEEEEEE---TTEEEEEESSSSEEEEEEETTTE----------
T ss_pred ee-cCEEEEEEccCcc-c------chhhheec-ceEEEEEEecc---ccEEEEEEcccCEEEEEEEccCCE---------
Confidence 43 4899999998642 0 12222232 23367777765 358888888888887755432100
Q ss_pred cceEEEeccCCceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCC
Q 005506 193 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 247 (693)
Q Consensus 193 ~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~ 247 (693)
-.++ .. ......++++.|-++. ..++++..+|.|.++....
T Consensus 163 --l~~v----------a~-d~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 163 --LILV----------AR-DYQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp --EEEE----------EE-ESS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-S
T ss_pred --EEEE----------Ee-cCCCccEEEEEEecCC-cEEEEEcCCCeEEEEEECC
Confidence 0111 00 0123568888888764 6999999999999998863
No 474
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.22 E-value=0.013 Score=59.94 Aligned_cols=77 Identities=14% Similarity=0.037 Sum_probs=63.8
Q ss_pred hhhhhHHHHH-HhccccCcHHHHHHhHhHhhccCCCCc---chhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHH
Q 005506 405 ECLCIRAALL-LKRKWKNDAQMAIRDCYNARRIDSSSF---RAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEK 480 (693)
Q Consensus 405 ~~~~NRA~~~-lk~~~~~d~~~Al~Dc~~Al~l~p~~~---KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~ 480 (693)
.-+.+.|..+ ++. ++|..|+..+.+.++..|++. .|+|.+|++++.+|++++|+..|+++++.+|+.......
T Consensus 143 ~~~Y~~A~~l~~~~---~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 143 NTDYNAAIALVQDK---SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 3456667766 443 569999999999999999984 799999999999999999999999999999988665555
Q ss_pred HHHH
Q 005506 481 VENI 484 (693)
Q Consensus 481 ~~~l 484 (693)
+.++
T Consensus 220 l~kl 223 (263)
T PRK10803 220 MFKV 223 (263)
T ss_pred HHHH
Confidence 4433
No 475
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.22 E-value=0.14 Score=57.73 Aligned_cols=87 Identities=9% Similarity=-0.005 Sum_probs=55.5
Q ss_pred CCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcC
Q 005506 146 HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS 225 (693)
Q Consensus 146 h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp 225 (693)
-..+...+.++|++..+++++..+.+|.++|+.+........ .+....+. ..... ...-...+|.+
T Consensus 319 VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~---~~~~~~vv----------aevev-GlGPLHTaFDg 384 (635)
T PRK02888 319 VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK---IKPRDAVV----------AEPEL-GLGPLHTAFDG 384 (635)
T ss_pred CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc---CCccceEE----------Eeecc-CCCcceEEECC
Confidence 346678899999777777777789999999998765321000 00011111 00111 11223567888
Q ss_pred CCCcEEEEEeCCCcEEEEecCC
Q 005506 226 TRPHLLLVGGSDAFARLYDRRM 247 (693)
Q Consensus 226 ~~~~~Latgs~Dg~IriwD~r~ 247 (693)
+ ++.+.+-..|..|..|++..
T Consensus 385 ~-G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 385 R-GNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred C-CCEEEeEeecceeEEEehHH
Confidence 6 67888888999999999875
No 476
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.16 E-value=1.3 Score=44.09 Aligned_cols=225 Identities=10% Similarity=0.042 Sum_probs=0.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCce
Q 005506 62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA 141 (693)
Q Consensus 62 g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~ 141 (693)
|.+++.|...|.+.+.+..+|.....+ ..-..-=......++ +.++..|+.|++.+..|.++. .++.
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f-~~~~~vk~~a~~d~~--~glIycgshd~~~yalD~~~~----------~cVy 129 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNF-VILETVKVRAQCDFD--GGLIYCGSHDGNFYALDPKTY----------GCVY 129 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeee-eehhhhccceEEcCC--CceEEEecCCCcEEEeccccc----------ceEE
Q ss_pred eeccCCCCeEEEEEecCCCcEEEEEeCCCcE-------------------------------------------------
Q 005506 142 LYQCHTRRVKKLAVEVGNPHVVWSASEDGTL------------------------------------------------- 172 (693)
Q Consensus 142 ~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V------------------------------------------------- 172 (693)
..++-.....+-+..| ++.-|..+...|.|
T Consensus 130 kskcgG~~f~sP~i~~-g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~~sG 208 (354)
T KOG4649|consen 130 KSKCGGGTFVSPVIAP-GDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFDESG 208 (354)
T ss_pred ecccCCceeccceecC-CCceEEEEeccceEEEEccCCCCcceehhhhcCCccccCceeccceEEEEEeccEEEEEcCCC
Q ss_pred -EEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCcc------ceEEEEEcC-----------CCCcEEEEE
Q 005506 173 -RQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL------SLKSCDISS-----------TRPHLLLVG 234 (693)
Q Consensus 173 -~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~------~v~sl~~sp-----------~~~~~Latg 234 (693)
.+|..+++.+.-.........-..+.--+.+.........+|-. ....+-.+| ..+.+|..+
T Consensus 209 ~qvwr~~t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~p~l~F~~h~~~~S~~~ll~~~ 288 (354)
T KOG4649|consen 209 RQVWRPATKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLSPKLRFDLHSPGISYPKLLRRS 288 (354)
T ss_pred cEEEeecCCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeCcccceeccCCCCcchhhhhhh
Q ss_pred eCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCCCC
Q 005506 235 GSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 235 s~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~~~ 312 (693)
+.||.+.|.-.+ .++.........++....+.+...-.....|.. ..|+.|+.|..|+.||+.+..
T Consensus 289 s~dgkv~il~~~-----~sl~~~~s~~g~lq~~~~~el~~eIFsSPvii~-------grl~igcRDdYv~cldl~~~~ 354 (354)
T KOG4649|consen 289 SGDGKVMILMTS-----KSLAEISSNGGELQNLEAIELSNEIFSSPVIID-------GRLLIGCRDDYVRCLDLDTWH 354 (354)
T ss_pred cCCCcEEEEEec-----ccccccccCCCccceEEEeecCcccccCCeEEc-------cEEEEEEccCeEEEEeccccC
No 477
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=96.14 E-value=0.015 Score=65.24 Aligned_cols=90 Identities=16% Similarity=-0.025 Sum_probs=75.7
Q ss_pred hhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHH
Q 005506 374 LEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQ 453 (693)
Q Consensus 374 ~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~KA~~r~a~al~~ 453 (693)
+.+++ |.+|.+.+...++.+|-- ...|.+++.|++++.. +..|+.+...++.++|++..|+-..+.||..
T Consensus 496 ~~~~~-fs~~~~hle~sl~~nplq------~~~wf~~G~~ALqlek---~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~ 565 (777)
T KOG1128|consen 496 LSNKD-FSEADKHLERSLEINPLQ------LGTWFGLGCAALQLEK---EQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR 565 (777)
T ss_pred ccchh-HHHHHHHHHHHhhcCccc------hhHHHhccHHHHHHhh---hHHHHHHHHHHhhcCCCchhhhhhhhHHHHH
Confidence 34466 888888888888877643 5678899999999644 8999999999999999999999999999999
Q ss_pred hccHHHHHHHHHHHcccCCC
Q 005506 454 LCKYKEALDFAIAAQCLDPS 473 (693)
Q Consensus 454 l~~~~eA~~~~~~~~~~~p~ 473 (693)
+++-.+|...++.+++-+-+
T Consensus 566 ~~~k~ra~~~l~EAlKcn~~ 585 (777)
T KOG1128|consen 566 LKKKKRAFRKLKEALKCNYQ 585 (777)
T ss_pred HhhhHHHHHHHHHHhhcCCC
Confidence 99999999999999876643
No 478
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.09 E-value=0.1 Score=48.21 Aligned_cols=98 Identities=20% Similarity=0.101 Sum_probs=74.5
Q ss_pred hhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCC-
Q 005506 362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS- 440 (693)
Q Consensus 362 ~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~- 440 (693)
.+..........+..++ +..+...+.+.++.+|.. ..........|.+++. .||+.+|+.....++.-.|+.
T Consensus 10 ~a~~~y~~~~~~~~~~~-~~~~~~~~~~l~~~~~~s---~ya~~A~l~lA~~~~~---~g~~~~A~~~l~~~~~~~~d~~ 82 (145)
T PF09976_consen 10 QASALYEQALQALQAGD-PAKAEAAAEQLAKDYPSS---PYAALAALQLAKAAYE---QGDYDEAKAALEKALANAPDPE 82 (145)
T ss_pred HHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCCCC---hHHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHhhCCCHH
Confidence 34455556666667777 888877888888877654 2223345556777776 467999999999999877654
Q ss_pred --cchhhhHHHHHHHhccHHHHHHHHHH
Q 005506 441 --FRAHLYMSEALEQLCKYKEALDFAIA 466 (693)
Q Consensus 441 --~KA~~r~a~al~~l~~~~eA~~~~~~ 466 (693)
..|.+|+|++++.+|++++|+..++.
T Consensus 83 l~~~a~l~LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 83 LKPLARLRLARILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 46999999999999999999999976
No 479
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.07 E-value=0.3 Score=57.12 Aligned_cols=133 Identities=15% Similarity=0.122 Sum_probs=87.3
Q ss_pred ccchhhhcccceeEEeccCCCc-EEEEEECC-----CCCEEEEEeCCCcEEEEECCCC--cEEEE-e-ccCCCcceEEEE
Q 005506 31 QMHSSLVRRLSQERELEGHQGC-VNAISWNS-----KGSLLISGSDDTHINVWSYSSR--KLLHS-I-ETGHSANVFCTK 100 (693)
Q Consensus 31 ~~~~~~i~~l~~~~~l~gH~~~-V~~l~~s~-----~g~~LaSgs~Dg~I~IWd~~~~--~~~~~-l-~~~h~~~I~sv~ 100 (693)
.++..-+.+++.+.+.+-|... |..++=.. .....+.|-.+..+..||+.-. +++.. . .........|++
T Consensus 505 ~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~a 584 (794)
T PF08553_consen 505 KLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFA 584 (794)
T ss_pred ceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEE
Confidence 4556678888889988887754 76665432 1344567778889999998742 23321 1 112334556665
Q ss_pred EeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 005506 101 FVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR 178 (693)
Q Consensus 101 f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr 178 (693)
-..+ .+||.|+.+|.||+||-- + . .....+.+-..+|..|.++. ++.+++ |..+..|.++++.
T Consensus 585 Tt~~---G~iavgs~~G~IRLyd~~-g--~-------~AKT~lp~lG~pI~~iDvt~-DGkwil-aTc~tyLlLi~t~ 647 (794)
T PF08553_consen 585 TTED---GYIAVGSNKGDIRLYDRL-G--K-------RAKTALPGLGDPIIGIDVTA-DGKWIL-ATCKTYLLLIDTL 647 (794)
T ss_pred ecCC---ceEEEEeCCCcEEeeccc-c--h-------hhhhcCCCCCCCeeEEEecC-CCcEEE-EeecceEEEEEEe
Confidence 5544 589999999999999832 1 1 22334556678999999999 555553 3445788888864
No 480
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.07 E-value=0.56 Score=51.25 Aligned_cols=201 Identities=11% Similarity=0.051 Sum_probs=107.4
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEE------EEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCC
Q 005506 61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFC------TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD 134 (693)
Q Consensus 61 ~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~s------v~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 134 (693)
.+..+++++.++.|.-+|..+++.+-.........+.. +.-.|.-.+..++.++.++.+..+|..++
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG------- 140 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDG------- 140 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCC-------
Confidence 35677788888999999999998876653222111110 00011111356777888999999999865
Q ss_pred CCCCCceeeccCCCCeEE-EEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCC
Q 005506 135 NAITPSALYQCHTRRVKK-LAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPK 213 (693)
Q Consensus 135 ~~~~~~~~~~~h~~~V~~-la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 213 (693)
+.+....... .+.+ ..+. + ..++.+..+|.|..+|..+++ .+|........ + ....
T Consensus 141 ---~~~W~~~~~~-~~~ssP~v~--~-~~v~v~~~~g~l~ald~~tG~--------------~~W~~~~~~~~-~-~~~~ 197 (394)
T PRK11138 141 ---EVAWQTKVAG-EALSRPVVS--D-GLVLVHTSNGMLQALNESDGA--------------VKWTVNLDVPS-L-TLRG 197 (394)
T ss_pred ---CCcccccCCC-ceecCCEEE--C-CEEEEECCCCEEEEEEccCCC--------------EeeeecCCCCc-c-cccC
Confidence 2233333221 1211 1121 3 345567788999999998876 34433322100 0 0000
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcC--CC
Q 005506 214 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP--NG 291 (693)
Q Consensus 214 ~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fsp--dg 291 (693)
...++ +. ...+++++.+|.+..+|..+++.+........... ..+ .....+.-+| .+
T Consensus 198 ~~sP~----v~---~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~--~~~------------~~~~~~~~sP~v~~ 256 (394)
T PRK11138 198 ESAPA----TA---FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGA--TEI------------DRLVDVDTTPVVVG 256 (394)
T ss_pred CCCCE----EE---CCEEEEEcCCCEEEEEEccCChhhheeccccCCCc--cch------------hcccccCCCcEEEC
Confidence 01111 11 13567778899999999988875433211100000 000 0000111112 24
Q ss_pred CEEEEEecCCcEEEEECCCCC
Q 005506 292 EEVLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 292 ~~L~sgs~Dg~V~lwdl~~~~ 312 (693)
..|++++.+|.++.+|+.+++
T Consensus 257 ~~vy~~~~~g~l~ald~~tG~ 277 (394)
T PRK11138 257 GVVYALAYNGNLVALDLRSGQ 277 (394)
T ss_pred CEEEEEEcCCeEEEEECCCCC
Confidence 567777789999999998864
No 481
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.03 E-value=0.29 Score=53.47 Aligned_cols=181 Identities=14% Similarity=0.128 Sum_probs=99.2
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEeccCCCc------ceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCC
Q 005506 64 LLISGSDDTHINVWSYSSRKLLHSIETGHSA------NVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAI 137 (693)
Q Consensus 64 ~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~------~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~ 137 (693)
.++.++.++.+..+|..+++.+......... ....+.-.|--.+..++.++.++.+..+|+.++.
T Consensus 207 ~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~--------- 277 (394)
T PRK11138 207 GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ--------- 277 (394)
T ss_pred EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC---------
Confidence 4666777888988998888765543211110 0111111221113567777789999999998642
Q ss_pred CCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccc
Q 005506 138 TPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLS 217 (693)
Q Consensus 138 ~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ 217 (693)
.+.... ......+.. .+..+..++.+|.|..+|..+++ .+|...... ...
T Consensus 278 -~~W~~~--~~~~~~~~~---~~~~vy~~~~~g~l~ald~~tG~--------------~~W~~~~~~----------~~~ 327 (394)
T PRK11138 278 -IVWKRE--YGSVNDFAV---DGGRIYLVDQNDRVYALDTRGGV--------------ELWSQSDLL----------HRL 327 (394)
T ss_pred -EEEeec--CCCccCcEE---ECCEEEEEcCCCeEEEEECCCCc--------------EEEcccccC----------CCc
Confidence 122211 111122222 23455577889999999988764 233211100 001
Q ss_pred eEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEE
Q 005506 218 LKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS 297 (693)
Q Consensus 218 v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sg 297 (693)
..+..+. +..|++++.||.|.++|..+++.+...... ... ......+ .+..|+++
T Consensus 328 ~~sp~v~---~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~-------------------~~~-~~s~P~~--~~~~l~v~ 382 (394)
T PRK11138 328 LTAPVLY---NGYLVVGDSEGYLHWINREDGRFVAQQKVD-------------------SSG-FLSEPVV--ADDKLLIQ 382 (394)
T ss_pred ccCCEEE---CCEEEEEeCCCEEEEEECCCCCEEEEEEcC-------------------CCc-ceeCCEE--ECCEEEEE
Confidence 1111222 347888999999999999887644322110 000 0111112 24578899
Q ss_pred ecCCcEEEEEC
Q 005506 298 YSGEHVYLMDV 308 (693)
Q Consensus 298 s~Dg~V~lwdl 308 (693)
+.||.|+.+++
T Consensus 383 t~~G~l~~~~~ 393 (394)
T PRK11138 383 ARDGTVYAITR 393 (394)
T ss_pred eCCceEEEEeC
Confidence 99999998875
No 482
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=96.01 E-value=0.02 Score=64.20 Aligned_cols=58 Identities=19% Similarity=0.117 Sum_probs=55.0
Q ss_pred cCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchh
Q 005506 420 KNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 477 (693)
Q Consensus 420 ~~d~~~Al~Dc~~Al~l~p~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~ 477 (693)
.+||.+|.++...+++++|-....+|+++-|.+++++++.|.++|..+..++|++.++
T Consensus 498 ~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~ea 555 (777)
T KOG1128|consen 498 NKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEA 555 (777)
T ss_pred chhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhh
Confidence 4789999999999999999999999999999999999999999999999999998654
No 483
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.026 Score=59.35 Aligned_cols=117 Identities=14% Similarity=0.071 Sum_probs=88.2
Q ss_pred ccCcchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCC------------------Ccchhhhhhh----H----
Q 005506 357 ATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIG------------------PMLRHECLCI----R---- 410 (693)
Q Consensus 357 ~~~~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~------------------~~~~~~~~~N----R---- 410 (693)
+..+.....+.+-|.-.|..|+ |.+|+..++++....|.... .++...|++- +
T Consensus 226 ~~lr~NvhLl~~lak~~~~~Gd-n~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wf 304 (564)
T KOG1174|consen 226 TTLRCNEHLMMALGKCLYYNGD-YFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWF 304 (564)
T ss_pred ccCCccHHHHHHHhhhhhhhcC-chHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhh
Confidence 3345566777888888999999 99999999999988775421 1111112211 1
Q ss_pred -HHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCch
Q 005506 411 -AALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (693)
Q Consensus 411 -A~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~ 476 (693)
++|++-- ..++..|+.-..++|+++|+++.||.-+|.+|.++++.++|.-.|++++.+.|..-.
T Consensus 305 V~~~~l~~--~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~ 369 (564)
T KOG1174|consen 305 VHAQLLYD--EKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLE 369 (564)
T ss_pred hhhhhhhh--hhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHH
Confidence 2222211 234888999999999999999999999999999999999999999999999987543
No 484
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=95.95 E-value=0.021 Score=63.40 Aligned_cols=107 Identities=21% Similarity=0.067 Sum_probs=83.6
Q ss_pred cchhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCC--cchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccC
Q 005506 360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGP--MLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRID 437 (693)
Q Consensus 360 ~~~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~--~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~ 437 (693)
+..+..++..|.-+...++ |.+|+..|.+|+.......++ +..+..+.|.|.+|.+++. |.+|-.-|.+|++|-
T Consensus 238 l~va~~l~~~a~~y~~~~k-~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GK---f~EA~~~~e~Al~I~ 313 (508)
T KOG1840|consen 238 LVVASMLNILALVYRSLGK-YDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGK---FAEAEEYCERALEIY 313 (508)
T ss_pred HHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCC---hHHHHHHHHHHHHHH
Confidence 3344555667888888899 999999999999876543322 2335689999999999755 999999999999762
Q ss_pred --------CCCcchhhhHHHHHHHhccHHHHHHHHHHHccc
Q 005506 438 --------SSSFRAHLYMSEALEQLCKYKEALDFAIAAQCL 470 (693)
Q Consensus 438 --------p~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~ 470 (693)
|.=.+.+...+..+..++++++|...++.++++
T Consensus 314 ~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 314 EKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred HHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 223456677788899999999999999988865
No 485
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.91 E-value=0.43 Score=53.95 Aligned_cols=224 Identities=13% Similarity=0.123 Sum_probs=114.2
Q ss_pred CCCEEEEEe-CCCcEEEEECCCCcEEEEeccCCCcceEEEEEe--eCCCCCEEEEEeC-------CC-----------cE
Q 005506 61 KGSLLISGS-DDTHINVWSYSSRKLLHSIETGHSANVFCTKFV--PETSDELVVSGAG-------DA-----------EV 119 (693)
Q Consensus 61 ~g~~LaSgs-~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~--p~~~~~~l~sgs~-------Dg-----------~V 119 (693)
||++|..-. .+.+|-..++...++-..+..+....+..++|. |++ .+++.++. || .+
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t--~yv~~~~e~~~PlpnDGk~l~~~~ey~~~v 217 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRT--GYVFCNGEFRIPLPNDGKDLDDPKKYRSLF 217 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCc--cEEEeCcccccccCCCCCEeecccceeEEE
Confidence 678888765 366777778887776655544555556666664 443 34444332 33 34
Q ss_pred EEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEe---CCC------------cEEEEeCCCCCCCC
Q 005506 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS---EDG------------TLRQHDFRQGSSCP 184 (693)
Q Consensus 120 ~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs---~Dg------------~V~lwDlr~~~~~~ 184 (693)
.+.|..+. +....+.- ......++++|++ .++++.+ +.| .+.++++.......
T Consensus 218 SvID~etm----------eV~~qV~V-dgnpd~v~~spdG-k~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~v 285 (635)
T PRK02888 218 TAVDAETM----------EVAWQVMV-DGNLDNVDTDYDG-KYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAV 285 (635)
T ss_pred EEEECccc----------eEEEEEEe-CCCcccceECCCC-CEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhh
Confidence 44444421 22222221 2244567788844 4554443 222 22333332111000
Q ss_pred CCCCC--CcccceEEEeccC----CceeeecCCCCCccceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCC
Q 005506 185 PAGSS--HQECRNILLDLRC----GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRM 258 (693)
Q Consensus 185 ~~~~~--~~~~~~~l~~~~~----~~~~~l~~~~~~~~~v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~ 258 (693)
..+.. -......++|..+ +.. .+...+ -......+.++|++..+++++..+++|.|+|+.+.+.... ...
T Consensus 286 kdGK~~~V~gn~V~VID~~t~~~~~~~-v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~--~~~ 361 (635)
T PRK02888 286 KAGKFKTIGGSKVPVVDGRKAANAGSA-LTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFD--GKI 361 (635)
T ss_pred hCCCEEEECCCEEEEEECCccccCCcc-eEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhh--ccC
Confidence 00000 0011233445444 111 111111 1124567899998655566667799999999998653211 011
Q ss_pred CCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEEEECCC
Q 005506 259 SPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~lwdl~~ 310 (693)
.+..++.--. .-+......+|+++|....+-.-|.+|..||+..
T Consensus 362 ~~~~~vvaev--------evGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 362 KPRDAVVAEP--------ELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CccceEEEee--------ccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 1111111110 1122346789999998777777799999999987
No 486
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.89 E-value=0.4 Score=50.78 Aligned_cols=186 Identities=13% Similarity=0.153 Sum_probs=109.2
Q ss_pred cEEEEECCCCcEEEEeccCCCcceEEEEEeeCCC-----CCEEEEEeC----------CCcEEEEEcCCCCCCCCCCCCC
Q 005506 73 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETS-----DELVVSGAG----------DAEVRLFNLSRFSGRGLDDNAI 137 (693)
Q Consensus 73 ~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~-----~~~l~sgs~----------Dg~V~vwdl~~~~~~~~~~~~~ 137 (693)
.|+|.|..+.+.+..+.-.....+++++...-.. ..+|+.|.. .|.|.++++..... .....
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~---~~~~l 79 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPE---NNFKL 79 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS--------EE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccc---cceEE
Confidence 5889999888877766444455666666554211 367777754 28899999986300 00011
Q ss_pred CCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccc
Q 005506 138 TPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLS 217 (693)
Q Consensus 138 ~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ 217 (693)
+.+... ...+.|++|+-. ++.++++ ..+.|.+|++...+.. .....++ ....
T Consensus 80 ~~i~~~-~~~g~V~ai~~~--~~~lv~~--~g~~l~v~~l~~~~~l---------~~~~~~~--------------~~~~ 131 (321)
T PF03178_consen 80 KLIHST-EVKGPVTAICSF--NGRLVVA--VGNKLYVYDLDNSKTL---------LKKAFYD--------------SPFY 131 (321)
T ss_dssp EEEEEE-EESS-EEEEEEE--TTEEEEE--ETTEEEEEEEETTSSE---------EEEEEE---------------BSSS
T ss_pred EEEEEE-eecCcceEhhhh--CCEEEEe--ecCEEEEEEccCcccc---------hhhheec--------------ceEE
Confidence 222222 357889998876 4444433 3488999999876411 0011110 1225
Q ss_pred eEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEE
Q 005506 218 LKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS 297 (693)
Q Consensus 218 v~sl~~sp~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sg 297 (693)
+.++.... +++++|..-..|.++..+... ..+..+. ......+++++.|-+++..++++
T Consensus 132 i~sl~~~~---~~I~vgD~~~sv~~~~~~~~~------------~~l~~va------~d~~~~~v~~~~~l~d~~~~i~~ 190 (321)
T PF03178_consen 132 ITSLSVFK---NYILVGDAMKSVSLLRYDEEN------------NKLILVA------RDYQPRWVTAAEFLVDEDTIIVG 190 (321)
T ss_dssp EEEEEEET---TEEEEEESSSSEEEEEEETTT------------E-EEEEE------EESS-BEEEEEEEE-SSSEEEEE
T ss_pred EEEEeccc---cEEEEEEcccCEEEEEEEccC------------CEEEEEE------ecCCCccEEEEEEecCCcEEEEE
Confidence 66666654 489999998888888544311 0011110 11112368999998777889999
Q ss_pred ecCCcEEEEECCC
Q 005506 298 YSGEHVYLMDVNH 310 (693)
Q Consensus 298 s~Dg~V~lwdl~~ 310 (693)
..+|.|+++....
T Consensus 191 D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 191 DKDGNLFVLRYNP 203 (321)
T ss_dssp ETTSEEEEEEE-S
T ss_pred cCCCeEEEEEECC
Confidence 9999999998874
No 487
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=95.83 E-value=0.043 Score=63.50 Aligned_cols=99 Identities=16% Similarity=0.128 Sum_probs=79.8
Q ss_pred cCCChhHHHHhhHHHHhcccCCCC----------------C----------c--chhhhhhhHHHHHHhccccCcHHHHH
Q 005506 376 EGKHPYYGIEACNEVLEGHLSGIG----------------P----------M--LRHECLCIRAALLLKRKWKNDAQMAI 427 (693)
Q Consensus 376 ~g~~y~~Ai~~Y~~ai~~~~~~~~----------------~----------~--~~~~~~~NRA~~~lk~~~~~d~~~Al 427 (693)
.+. |..|+..|.++|..+|.+.- + . .....|.|.|-||+-++. |..||
T Consensus 625 kk~-~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~q---y~~AI 700 (1018)
T KOG2002|consen 625 KKH-QEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQ---YRLAI 700 (1018)
T ss_pred HHH-HHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHH---HHHHH
Confidence 344 78888888888888775420 0 0 013568899999999877 99999
Q ss_pred HhHhHhhcc--CCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhH
Q 005506 428 RDCYNARRI--DSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA 478 (693)
Q Consensus 428 ~Dc~~Al~l--~p~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~ 478 (693)
.-...+++. ..+.+..+.++|+|+++-+++.+|++.+..+..+.|.|..+.
T Consensus 701 qmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~ 753 (1018)
T KOG2002|consen 701 QMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVK 753 (1018)
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHH
Confidence 999999864 346678999999999999999999999999999999987653
No 488
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.82 E-value=0.0095 Score=39.43 Aligned_cols=31 Identities=19% Similarity=0.239 Sum_probs=29.7
Q ss_pred hhhhHHHHHHHhccHHHHHHHHHHHcccCCC
Q 005506 443 AHLYMSEALEQLCKYKEALDFAIAAQCLDPS 473 (693)
Q Consensus 443 A~~r~a~al~~l~~~~eA~~~~~~~~~~~p~ 473 (693)
|+|++|.++..+|++++|.+.+++++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 7899999999999999999999999999996
No 489
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=95.78 E-value=0.11 Score=56.96 Aligned_cols=109 Identities=12% Similarity=-0.054 Sum_probs=58.9
Q ss_pred hhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcc
Q 005506 363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR 442 (693)
Q Consensus 363 a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~K 442 (693)
+.....+|-..+..|+ |..|.+...++-+..+.. ...|..-|.+..++ |++..|..-+.+|.+.+|++.-
T Consensus 84 ~~~~~~~gl~a~~eGd-~~~A~k~l~~~~~~~~~p------~l~~llaA~aA~~~---g~~~~A~~~l~~A~~~~~~~~~ 153 (398)
T PRK10747 84 ARKQTEQALLKLAEGD-YQQVEKLMTRNADHAEQP------VVNYLLAAEAAQQR---GDEARANQHLERAAELADNDQL 153 (398)
T ss_pred HHHHHHHHHHHHhCCC-HHHHHHHHHHHHhcccch------HHHHHHHHHHHHHC---CCHHHHHHHHHHHHhcCCcchH
Confidence 3444455556666677 776665444433321111 12222222222443 4466677777777776666542
Q ss_pred -hhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHH
Q 005506 443 -AHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKV 481 (693)
Q Consensus 443 -A~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~ 481 (693)
...+.++.++..|++++|++.++++.+.+|++..+...+
T Consensus 154 ~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll 193 (398)
T PRK10747 154 PVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLA 193 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 233446666667777777777777777777665544333
No 490
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.77 E-value=0.021 Score=54.44 Aligned_cols=66 Identities=21% Similarity=0.129 Sum_probs=54.5
Q ss_pred hHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCC
Q 005506 365 MLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS 440 (693)
Q Consensus 365 ~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~ 440 (693)
.+...|-..++.++ +..||+.+++||++.|.. -..+-.||-+|-|+.. |..||.|..+.+++||..
T Consensus 136 ly~Nraaa~iKl~k-~e~aI~dcsKaiel~pty------~kAl~RRAeayek~ek---~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 136 LYSNRAAALIKLRK-WESAIEDCSKAIELNPTY------EKALERRAEAYEKMEK---YEEALEDYKKILESDPSR 201 (271)
T ss_pred HHhhhHHHHHHhhh-HHHHHHHHHhhHhcCchh------HHHHHHHHHHHHhhhh---HHHHHHHHHHHHHhCcch
Confidence 34556666778888 999999999999999865 2334588999999866 999999999999999964
No 491
>PRK11906 transcriptional regulator; Provisional
Probab=95.76 E-value=0.035 Score=59.98 Aligned_cols=88 Identities=14% Similarity=-0.035 Sum_probs=71.9
Q ss_pred hhHHHHhhHHHHhcccCCCCCcchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhccHHH
Q 005506 380 PYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKE 459 (693)
Q Consensus 380 y~~Ai~~Y~~ai~~~~~~~~~~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~KA~~r~a~al~~l~~~~e 459 (693)
-..|+.+-.+|++..+.+ +..+...|.++.-. +++..|+.-..+|+.|+|++.-++|.+|..+.--|+.++
T Consensus 320 ~~~a~~~A~rAveld~~D------a~a~~~~g~~~~~~---~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~ 390 (458)
T PRK11906 320 AQKALELLDYVSDITTVD------GKILAIMGLITGLS---GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEE 390 (458)
T ss_pred HHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHhh---cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHH
Confidence 456777777788887766 44444445544443 448899999999999999999999999999999999999
Q ss_pred HHHHHHHHcccCCCCch
Q 005506 460 ALDFAIAAQCLDPSNSV 476 (693)
Q Consensus 460 A~~~~~~~~~~~p~~~~ 476 (693)
|.+.++++++++|--..
T Consensus 391 a~~~i~~alrLsP~~~~ 407 (458)
T PRK11906 391 ARICIDKSLQLEPRRRK 407 (458)
T ss_pred HHHHHHHHhccCchhhH
Confidence 99999999999997543
No 492
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.76 E-value=0.015 Score=47.28 Aligned_cols=71 Identities=14% Similarity=-0.009 Sum_probs=55.4
Q ss_pred hhhhHHHHHHhhhhcCCChhHHHHhhHHHHhcccCCCCC-cchhhhhhhHHHHHHhccccCcHHHHHHhHhHhhcc
Q 005506 362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGP-MLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRI 436 (693)
Q Consensus 362 ~a~~lk~~gn~~~~~g~~y~~Ai~~Y~~ai~~~~~~~~~-~~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l 436 (693)
.+..+...|.-++..|+ |.+|+..|.++++........ ...+.+|.|.|.+|.++ ||+..|+.-..+|+++
T Consensus 4 ~a~~~~~la~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~---g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 4 TANAYNNLARVYRELGR-YDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRL---GDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhh
Confidence 35566778888999999 999999999999884333222 23367899999999995 5599999999999876
No 493
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.044 Score=60.45 Aligned_cols=77 Identities=18% Similarity=0.267 Sum_probs=65.5
Q ss_pred CcceEEEEEeeCCCCCEEEEEeCCCcEEEEEcCCCCCCCCCCCCCCCceeeccCCCCeE-EEEEecCCCcEEEEEeCCCc
Q 005506 93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVK-KLAVEVGNPHVVWSASEDGT 171 (693)
Q Consensus 93 ~~~I~sv~f~p~~~~~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~-~la~sp~~~~~l~Sgs~Dg~ 171 (693)
...|.-+.|+|.- .+||++..+|.|.++.++. ..+.++.-|...|+ +++|.| ++++|+.|-.||+
T Consensus 20 ~~~i~~~ewnP~~--dLiA~~t~~gelli~R~n~-----------qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~ 85 (665)
T KOG4640|consen 20 PINIKRIEWNPKM--DLIATRTEKGELLIHRLNW-----------QRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGT 85 (665)
T ss_pred ccceEEEEEcCcc--chhheeccCCcEEEEEecc-----------ceeEeccCCCCccceeeeecC-CCCEEEEEecCCe
Confidence 4568889999994 8999999999999999883 44777776777777 999999 6899999999999
Q ss_pred EEEEeCCCCCCC
Q 005506 172 LRQHDFRQGSSC 183 (693)
Q Consensus 172 V~lwDlr~~~~~ 183 (693)
|++.|+.++...
T Consensus 86 I~L~Dve~~~~l 97 (665)
T KOG4640|consen 86 IRLHDVEKGGRL 97 (665)
T ss_pred EEEEEccCCCce
Confidence 999999987643
No 494
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.72 E-value=0.55 Score=51.61 Aligned_cols=123 Identities=12% Similarity=0.143 Sum_probs=74.3
Q ss_pred eEEeccCCCcEEEEEECCCCCEEEEEe---CC-CcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeCCCc
Q 005506 43 ERELEGHQGCVNAISWNSKGSLLISGS---DD-THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 118 (693)
Q Consensus 43 ~~~l~gH~~~V~~l~~s~~g~~LaSgs---~D-g~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~Dg~ 118 (693)
...+..-...+..=+|+|++..++--+ .. ..+.++++.+++....+. ..+.-..-+|+|++ ..++++...|+.
T Consensus 185 ~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--~~g~~~~P~fspDG-~~l~f~~~rdg~ 261 (425)
T COG0823 185 QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--FNGNNGAPAFSPDG-SKLAFSSSRDGS 261 (425)
T ss_pred eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--cCCccCCccCCCCC-CEEEEEECCCCC
Confidence 334444456777889999998766542 22 459999999887655542 34445667899995 455666777887
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 005506 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDF 177 (693)
Q Consensus 119 V~vwdl~~~~~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDl 177 (693)
..||-+....+. ...+..-.+.-..=.|+|++..++.+.+..|.-.||-.
T Consensus 262 ~~iy~~dl~~~~---------~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~ 311 (425)
T COG0823 262 PDIYLMDLDGKN---------LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLY 311 (425)
T ss_pred ccEEEEcCCCCc---------ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEE
Confidence 666644432221 11122112222245788977777777777776555433
No 495
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=95.71 E-value=0.0053 Score=51.00 Aligned_cols=55 Identities=24% Similarity=0.251 Sum_probs=46.8
Q ss_pred CcHHHHHHhHhHhhccCCC--CcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCch
Q 005506 421 NDAQMAIRDCYNARRIDSS--SFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV 476 (693)
Q Consensus 421 ~d~~~Al~Dc~~Al~l~p~--~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~ 476 (693)
+++..|+.-+.++++.+|. +...++.+|+|++.+|+|++|++.+++ .+.+|.+..
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~ 59 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPD 59 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHH
Confidence 6799999999999999995 466788899999999999999999998 667776533
No 496
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.71 E-value=0.074 Score=59.43 Aligned_cols=124 Identities=19% Similarity=0.192 Sum_probs=85.9
Q ss_pred CCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeeecCCCCCccceEEEEEcC
Q 005506 146 HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS 225 (693)
Q Consensus 146 h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~v~sl~~sp 225 (693)
|...|+--++.. ...+++.|+.-|.|.+|.-..+.... ....+....+..+.+|+
T Consensus 32 ~~~~v~lTc~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~------------------------~~~~~~~~~~~~~~vs~ 86 (726)
T KOG3621|consen 32 FPARVKLTCVDA-TEEYLAMGSSAGSVYLYNRHTGEMRK------------------------LKNEGATGITCVRSVSS 86 (726)
T ss_pred CcceEEEEEeec-CCceEEEecccceEEEEecCchhhhc------------------------ccccCccceEEEEEecc
Confidence 444555555555 56789999999999999866544210 00001234556677888
Q ss_pred CCCcEEEEEeCCCcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEEEcCCCCEEEEEecCCcEEE
Q 005506 226 TRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYL 305 (693)
Q Consensus 226 ~~~~~Latgs~Dg~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fspdg~~L~sgs~Dg~V~l 305 (693)
+ ..++|.|+..|.|.+|-+....+ +...++.+.+.. |. ..||+++|++++..|++|...|+|.+
T Consensus 87 ~-e~lvAagt~~g~V~v~ql~~~~p-----------~~~~~~t~~d~~---~~-~rVTal~Ws~~~~k~ysGD~~Gkv~~ 150 (726)
T KOG3621|consen 87 V-EYLVAAGTASGRVSVFQLNKELP-----------RDLDYVTPCDKS---HK-CRVTALEWSKNGMKLYSGDSQGKVVL 150 (726)
T ss_pred h-hHhhhhhcCCceEEeehhhccCC-----------Ccceeecccccc---CC-ceEEEEEecccccEEeecCCCceEEE
Confidence 6 57889999999999998876322 223333333321 33 36999999999999999999999999
Q ss_pred EECCC
Q 005506 306 MDVNH 310 (693)
Q Consensus 306 wdl~~ 310 (693)
-.+++
T Consensus 151 ~~L~s 155 (726)
T KOG3621|consen 151 TELDS 155 (726)
T ss_pred EEech
Confidence 98887
No 497
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.64 E-value=0.017 Score=61.08 Aligned_cols=68 Identities=22% Similarity=0.170 Sum_probs=58.5
Q ss_pred cCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHHHHHHHH
Q 005506 420 KNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKH 487 (693)
Q Consensus 420 ~~d~~~Al~Dc~~Al~l~p~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~~~l~~~ 487 (693)
.||+..|+.-..+||.-|.+-+.|+|..+..+.+||+++||++||-++..+--++.++.-++..+.+-
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~ 570 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYEL 570 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999887777776665555554443
No 498
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.61 E-value=2.5 Score=45.96 Aligned_cols=204 Identities=16% Similarity=0.187 Sum_probs=126.9
Q ss_pred EEEEEECCCCC-EEEEEeCCCcEEEEECCCCcEEEEeccCCCcceEEEEEeeCCCCCEEEEEeC---CCcEEEEEcCCCC
Q 005506 53 VNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFNLSRFS 128 (693)
Q Consensus 53 V~~l~~s~~g~-~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~sv~f~p~~~~~~l~sgs~---Dg~V~vwdl~~~~ 128 (693)
-+.+..++.+. ..++...+..|.+.|..+.+.+..+..+. ....++|.|+. ..+..+.. +++|.+.|-...
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~--~~vYV~n~~~~~~~vsvid~~t~- 150 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDG--KYVYVANAGNGNNTVSVIDAATN- 150 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCC--CEEEEEecccCCceEEEEeCCCC-
Confidence 44677888777 55566667899999988888888775454 56789999984 44444443 677887777754
Q ss_pred CCCCCCCCCCCceeeccCCCCeEEEEEecCCCcEEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccceEEEeccCCceeee
Q 005506 129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 208 (693)
Q Consensus 129 ~~~~~~~~~~~~~~~~~h~~~V~~la~sp~~~~~l~Sgs~Dg~V~lwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 208 (693)
........-..+ ..+++.|.+...+++-..++.|.+.|........ .. .+.. +
T Consensus 151 ---------~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~--~~-------------~~~~--~ 203 (381)
T COG3391 151 ---------KVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR--GS-------------VGSL--V 203 (381)
T ss_pred ---------eEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec--cc-------------cccc--c
Confidence 223332222223 8899999665566666688999999966543210 00 0000 0
Q ss_pred cCCCCCccceEEEEEcCCCCcEEEEEeCC--CcEEEEecCCCCCCcccccCCCCCCcccccccCccccCCCCccceEEEE
Q 005506 209 ADPPKQTLSLKSCDISSTRPHLLLVGGSD--AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT 286 (693)
Q Consensus 209 ~~~~~~~~~v~sl~~sp~~~~~Latgs~D--g~IriwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~ 286 (693)
.....-..+.++|++....++-..+ +.|...|..+......- . + .... ....+.
T Consensus 204 ----~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~------------~-~------~~~~-~~~~v~ 259 (381)
T COG3391 204 ----GVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATD------------L-P------VGSG-APRGVA 259 (381)
T ss_pred ----ccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEec------------c-c------cccC-CCCcee
Confidence 0011234578899854444444444 58888888765432210 0 0 0011 234689
Q ss_pred EcCCCCEEEEEec-CCcEEEEECCCCC
Q 005506 287 FSPNGEEVLLSYS-GEHVYLMDVNHAG 312 (693)
Q Consensus 287 fspdg~~L~sgs~-Dg~V~lwdl~~~~ 312 (693)
++|+|.++.+... .+.|.+.|..+..
T Consensus 260 ~~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 260 VDPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred ECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence 9999999988855 5899999988844
No 499
>PRK10941 hypothetical protein; Provisional
Probab=95.60 E-value=0.044 Score=56.15 Aligned_cols=82 Identities=18% Similarity=0.069 Sum_probs=68.4
Q ss_pred chhhhhhhHHHHHHhccccCcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHcccCCCCchhHHHH
Q 005506 402 LRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKV 481 (693)
Q Consensus 402 ~~~~~~~NRA~~~lk~~~~~d~~~Al~Dc~~Al~l~p~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~~p~~~~~~~~~ 481 (693)
+..-+..|.-++|++.+ ++..|++.++..|.++|+++--+--||-+|.+|+.+..|..|++..++..|++..+
T Consensus 179 il~Rml~nLK~~~~~~~---~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a---- 251 (269)
T PRK10941 179 VIRKLLDTLKAALMEEK---QMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS---- 251 (269)
T ss_pred HHHHHHHHHHHHHHHcC---cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH----
Confidence 33446788889999964 49999999999999999999777779999999999999999999999999998654
Q ss_pred HHHHHHHHH
Q 005506 482 ENIKKHIAA 490 (693)
Q Consensus 482 ~~l~~~i~~ 490 (693)
+.++.++++
T Consensus 252 ~~ik~ql~~ 260 (269)
T PRK10941 252 EMIRAQIHS 260 (269)
T ss_pred HHHHHHHHH
Confidence 345555544
No 500
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=95.60 E-value=0.15 Score=56.13 Aligned_cols=50 Identities=10% Similarity=-0.044 Sum_probs=30.8
Q ss_pred CcHHHHHHhHhHhhccCCCCcchhhhHHHHHHHhccHHHHHHHHHHHccc
Q 005506 421 NDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCL 470 (693)
Q Consensus 421 ~d~~~Al~Dc~~Al~l~p~~~KA~~r~a~al~~l~~~~eA~~~~~~~~~~ 470 (693)
|++..|+....+.++..|+++.++.-.++++..+|++++|.+.+.++++.
T Consensus 167 ~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 167 NELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA 216 (409)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 34666666666666666666666666666666666666666666666554
Done!