Query 005506
Match_columns 693
No_of_seqs 689 out of 3890
Neff 8.6
Searched_HMMs 29240
Date Tue Mar 26 18:19:14 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005506.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2013-2017//hhsearch_pdb/005506hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 1.0 1 1 257.5 31.0 169 40-248 98-266 (410)
2 2ymu_A WD-40 repeat protein; u 1.0 1 1 257.5 24.6 186 41-246 7-210 (577)
3 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 251.6 32.1 258 42-340 607-901 (1249)
4 2ynn_A Coatomer subunit beta'; 1.0 1 1 249.9 31.3 249 39-333 2-282 (304)
5 1vyh_C Platelet-activating fac 1.0 1 1 249.4 29.8 187 85-332 101-287 (410)
6 3iz6_a 40S ribosomal protein R 1.0 1 1 249.1 25.4 230 37-312 53-282 (380)
7 3ow8_A WD repeat-containing pr 1.0 1 1 248.8 29.1 254 43-334 25-303 (321)
8 4gqb_B Methylosome protein 50; 1.0 1 1 246.5 30.8 233 46-336 78-314 (344)
9 2ynn_A Coatomer subunit beta'; 1.0 1 1 244.9 31.1 247 25-310 32-302 (304)
10 1nr0_A Actin interacting prote 1.0 1 1 243.3 32.1 228 28-312 39-272 (611)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=1.00 E-value=1 Score=257.47 Aligned_cols=169 Identities=20% Similarity=0.312 Sum_probs=132.2
Q ss_pred CCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCEEEEEEEECCCCCEEEEEECCCCE
Q ss_conf 30007841677857999997999999999599959999899980777734577745699999417999899999689949
Q 005506 40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 119 (693)
Q Consensus 40 l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~si~f~p~~~~~~lvsgs~Dg~I 119 (693)
......+.+|.++|++++|+|++.+|++|+.|+.|+|||+.+++....+ .+|.+.|.+++|+|+ +.+|++|+.|++|
T Consensus 98 ~~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l-~~h~~~V~~v~~~~~--~~~l~sgs~D~~i 174 (410)
T 1vyh_C 98 PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL-KGHTDSVQDISFDHS--GKLLASCSADMTI 174 (410)
T ss_dssp SSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEE-CCCSSCEEEEEECTT--SSEEEEEETTSCC
T ss_pred CCCEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEE-ECCCCCEEEEEECCC--CCEEEEEECCCEE
T ss_conf 9730766166776899999699998999938985999989999377888-166786878998599--9999999189819
Q ss_pred EEEECCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 99995889878878898877223215789757999922999599999289949998478998899998887653118984
Q 005506 120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 199 (693)
Q Consensus 120 ~iwdi~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~~~~~l~Sgs~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~ 199 (693)
++||+... ..+..+.+|...|.+++|+| ++.+|++++.|++|++||++++....
T Consensus 175 ~iwd~~~~----------~~~~~~~~h~~~V~~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~~~~--------------- 228 (410)
T 1vyh_C 175 KLWDFQGF----------ECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVK--------------- 228 (410)
T ss_dssp CEEETTSS----------CEEECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEE---------------
T ss_pred EEEECCCC----------CEEEEECCCCCCEEEEEEEC-CCCEEEEEECCCEEEEEECCCCCEEE---------------
T ss_conf 99958998----------26699828999778999967-99999999689969999899994899---------------
Q ss_pred CCCCCEEEECCCCCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCCC
Q ss_conf 4689534312899994154999980899949999969991999966999
Q 005506 200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML 248 (693)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~i~si~~sp~~~~~Latgs~Dg~I~iwD~r~~ 248 (693)
....|...+.++.++|+ +.++++|+.|+.|++||+++.
T Consensus 229 ----------~~~~h~~~v~~~~~~~~-g~~l~s~s~D~~v~vwd~~~~ 266 (410)
T 1vyh_C 229 ----------TFTGHREWVRMVRPNQD-GTLIASCSNDQTVRVWVVATK 266 (410)
T ss_dssp ----------EEECCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTC
T ss_pred ----------EEECCCCCEEEEEECCC-CCEEEEECCCCEEEEEECCCC
T ss_conf ----------99278862899999899-999999918990999989897
No 2
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=257.46 Aligned_cols=186 Identities=22% Similarity=0.357 Sum_probs=136.1
Q ss_pred CEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCEEEEEEEECCCCCEEEEEECCCCEE
Q ss_conf 00078416778579999979999999995999599998999807777345777456999994179998999996899499
Q 005506 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120 (693)
Q Consensus 41 ~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~si~f~p~~~~~~lvsgs~Dg~I~ 120 (693)
+..+.|+||++.|++++|+|+|++||+|+.|+.|+|||. +++++..+ .+|.+.|++++|+|+ +++|++++.|++|+
T Consensus 7 ~e~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l-~gh~~~V~~l~fspd--g~~las~~~d~~i~ 82 (577)
T 2ymu_A 7 KERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL-TGHSSSVWGVAFSPD--GQTIASASDDKTVK 82 (577)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEE-ECCSSCEEEEEECTT--SSEEEEEETTSCEE
T ss_pred EEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEE-ECCCCCEEEEEECCC--CCEEEEEECCCEEE
T ss_conf 894398789985799999899899999938998999979-99789999-689899899999899--99999996989799
Q ss_pred EEECCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCC-----------
Q ss_conf 999588987887889887722321578975799992299959999928994999847899889999888-----------
Q 005506 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS----------- 189 (693)
Q Consensus 121 iwdi~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~~~~~l~Sgs~Dg~I~iwDlr~~~~~~~~~~~----------- 189 (693)
+||+.. +.+..+.+|...|.+++|+| ++.+|++++.|+.+++|+.............
T Consensus 83 vWd~~~-----------~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 150 (577)
T 2ymu_A 83 LWNRNG-----------QLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPD 150 (577)
T ss_dssp EEETTS-----------CEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTT
T ss_pred EEECCC-----------CEEEEEECCCCCEEEEEECC-CCCEEEEECCCCCEEECCCCCCEEEECCCCCCCEEEEEEECC
T ss_conf 998999-----------78999978999889999989-999899980798335202355200110477774355542037
Q ss_pred -------CCCCCEEEEECCCCCEEEECCCCCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECC
Q ss_conf -------765311898446895343128999941549999808999499999699919999669
Q 005506 190 -------HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR 246 (693)
Q Consensus 190 -------~~~~~~~l~~~~~~~~~~l~~~~~~~~~i~si~~sp~~~~~Latgs~Dg~I~iwD~r 246 (693)
.......++..... .......+...+.++.++|+ +.++++++.|+.|++||..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~~w~~~ 210 (577)
T 2ymu_A 151 GQTIASASDDKTVKLWNRNGQ---LLQTLTGHSSSVWGVAFSPD-GQTIASASDDKTVKLWNRN 210 (577)
T ss_dssp SSCEEEEETTSEEEEECTTSC---EEEEEECCSSCEEEEEECTT-SSCEEEEETTSEEEEECTT
T ss_pred CCCCEECCCCCCEECCCCCEE---EEEECCCCCCCEEEEEECCC-CCEEEEECCCCEEEEEECC
T ss_conf 763200255531000000000---00002687763566541699-7789998599989999499
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=251.63 Aligned_cols=258 Identities=19% Similarity=0.216 Sum_probs=200.2
Q ss_pred EEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCEEEEEEEECCCCCEEEEEECCCCEEE
Q ss_conf 00784167785799999799999999959995999989998077773457774569999941799989999968994999
Q 005506 42 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 121 (693)
Q Consensus 42 ~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~si~f~p~~~~~~lvsgs~Dg~I~i 121 (693)
....+.+|.+.|++++|+|++++|++|+.|+.|+||++.+++.+..+ .+|.+.|.+++|+|+ +.+|++++.|+.|++
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~-~~h~~~v~~~~~s~~--~~~l~s~~~d~~v~v 683 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI-KAHEDEVLCCAFSSD--DSYIATCSADKKVKI 683 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTSEEEE
T ss_pred CEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEE-CCCCCCEEEEEEECC--CCEEEEEECCCEEEE
T ss_conf 22787166664899998799998999948894999998999788876-067777899999269--998999818995999
Q ss_pred EECCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECC-CCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 9958898788788988772232157897579999229-995999992899499984789988999988876531189844
Q 005506 122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 200 (693)
Q Consensus 122 wdi~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~-~~~~l~Sgs~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~ 200 (693)
||+.+. ..+..+..|...|.+++|+|. +..++++++.||.|++||++++..
T Consensus 684 wd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~------------------ 735 (1249)
T 3sfz_A 684 WDSATG----------KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC------------------ 735 (1249)
T ss_dssp EETTTC----------CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE------------------
T ss_pred EECCCC----------CEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCH------------------
T ss_conf 877999----------3689995899737999984089965999980897099998999634------------------
Q ss_pred CCCCEEEECCCCCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCC-------------CCCCCCCC
Q ss_conf 68953431289999415499998089994999996999199996699999754456799-------------99864322
Q 005506 201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS-------------PPPCVNYF 267 (693)
Q Consensus 201 ~~~~~~~l~~~~~~~~~i~si~~sp~~~~~Latgs~Dg~I~iwD~r~~~~~~~~~~~~~-------------~~~~~~~~ 267 (693)
+.....|...|.+++|+|+ +.++++++.||.|++||++.......+..... ...++. +
T Consensus 736 -------~~~~~~h~~~v~~~~~sp~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~ 806 (1249)
T 3sfz_A 736 -------RNTMFGHTNSVNHCRFSPD-DELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCS-W 806 (1249)
T ss_dssp -------EEEECCCSSCEEEEEECSS-TTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCC-B
T ss_pred -------HHEECCCCCCEEEEEEECC-CCEEEEEECCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEE-E
T ss_conf -------2201277797889999259-998999978985999968888655302023210246776445650179999-9
Q ss_pred CCC-----------------------CCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEEEECCCCC
Q ss_conf 567-----------------------435688775546999992899989999569929999879999520795129985
Q 005506 268 CPM-----------------------HLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDAS 324 (693)
Q Consensus 268 ~~~-----------------------~~~~~~~~~~~V~~i~fspdg~~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~ 324 (693)
.+. .....+|.. .|++++|+|++.++++++.++.|++||+.++........+...+
T Consensus 807 s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v 885 (1249)
T 3sfz_A 807 SADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHS-TIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWV 885 (1249)
T ss_dssp CTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSS-CCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCE
T ss_pred CCCCCEEEEECCCCEEEEEECCCCCEEEECCCCCC-CEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCCE
T ss_conf 78998899975895999995689723577478777-60799982788889999479869999867895653227876656
Q ss_pred EEEEECCCCCCCCCCC
Q ss_conf 1378466878520058
Q 005506 325 KIMSFTPTLNGLELQP 340 (693)
Q Consensus 325 ~~~~~sp~~~~~~~~~ 340 (693)
..+.|+|+...+....
T Consensus 886 ~~v~~spdg~~l~s~s 901 (1249)
T 3sfz_A 886 HGVMFSPDGSSFLTAS 901 (1249)
T ss_dssp EEEEECTTSSEEEEEE
T ss_pred EEEEECCCCCEEEEEE
T ss_conf 8999989999899995
No 4
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=1.00 E-value=1 Score=249.87 Aligned_cols=249 Identities=14% Similarity=0.227 Sum_probs=152.7
Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCEEEEEEEECCCCCEEEEEECCCC
Q ss_conf 43000784167785799999799999999959995999989998077773457774569999941799989999968994
Q 005506 39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 118 (693)
Q Consensus 39 ~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~si~f~p~~~~~~lvsgs~Dg~ 118 (693)
++.+.++|.+|.+.|++++|+|++.+|++|+.|+.|+|||+.++..+..+ ..|..+|.+++|+|+ +++|++|+.|++
T Consensus 2 ~l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~l~s~s~d~~ 78 (304)
T 2ynn_A 2 KLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSI-QVTETPVRAGKFIAR--KNWIIVGSDDFR 78 (304)
T ss_dssp CCCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEEGG--GTEEEEEETTSE
T ss_pred CCEEEEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEE-ECCCCCEEEEEEECC--CCEEEEECCCCE
T ss_conf 31467701078885689998999987999827996999878888266776-056774889999689--998999889997
Q ss_pred EEEEECCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 99999588987887889887722321578975799992299959999928994999847899889999888765311898
Q 005506 119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 198 (693)
Q Consensus 119 I~iwdi~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~~~~~l~Sgs~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~ 198 (693)
|++||+... +.+..+.+|...|.+++|+| ++.+|++++.||+|++||++....+
T Consensus 79 i~vwd~~~~----------~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~--------------- 132 (304)
T 2ynn_A 79 IRVFNYNTG----------EKVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWAL--------------- 132 (304)
T ss_dssp EEEEETTTC----------CEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEEGGGTTEE---------------
T ss_pred EEEEECCCC----------CEEEEEECCCCCEEEEEECC-CCCEEEEECCCCEEEEEECCCCCCH---------------
T ss_conf 999999999----------67899807998089999959-9999999879981999989999223---------------
Q ss_pred ECCCCCEEEECCCCCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCC------------------
Q ss_conf 44689534312899994154999980899949999969991999966999997544567999------------------
Q 005506 199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP------------------ 260 (693)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~i~si~~sp~~~~~Latgs~Dg~I~iwD~r~~~~~~~~~~~~~~------------------ 260 (693)
......|...|.+++|+|.++.+|++|+.|+.|++||++...+...+......
T Consensus 133 ---------~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s 203 (304)
T 2ynn_A 133 ---------EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT 203 (304)
T ss_dssp ---------EEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEE
T ss_pred ---------HHHHCCCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCCCEECCCCCCCEEEEEEEECCCCCEEEE
T ss_conf ---------10105668957999988899998999918983999989999766332168747577899998699999999
Q ss_pred --------------CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEEEECCCCCEE
Q ss_conf --------------986432256743568877554699999289998999956992999987999952079512998513
Q 005506 261 --------------PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKI 326 (693)
Q Consensus 261 --------------~~~~~~~~~~~~~~~~~~~~~V~~i~fspdg~~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~~ 326 (693)
..++..+ .+|.. .|+.++|+|++.+|++++.|+.|++||+.++........+...+..
T Consensus 204 ~s~D~~i~iWd~~~~~~~~~~-------~~h~~-~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~ 275 (304)
T 2ynn_A 204 ASDDLTIKIWDYQTKSCVATL-------EGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWC 275 (304)
T ss_dssp EETTSEEEEEETTTTEEEEEE-------ECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEE
T ss_pred ECCCCEEEEEECCCCCCCEEE-------CCCCC-CEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEECCCCCCCEEE
T ss_conf 869991999967898602464-------79888-8899998899998999938995999989987145644689860899
Q ss_pred EEECCCC
Q ss_conf 7846687
Q 005506 327 MSFTPTL 333 (693)
Q Consensus 327 ~~~sp~~ 333 (693)
++++|..
T Consensus 276 ~~~~~~~ 282 (304)
T 2ynn_A 276 IATHPTG 282 (304)
T ss_dssp EEECTTC
T ss_pred EEECCCC
T ss_conf 9987899
No 5
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=1.00 E-value=1 Score=249.41 Aligned_cols=187 Identities=17% Similarity=0.207 Sum_probs=148.8
Q ss_pred EEEECCCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCEEE
Q ss_conf 77734577745699999417999899999689949999958898788788988772232157897579999229995999
Q 005506 85 LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW 164 (693)
Q Consensus 85 ~~~l~~~h~~~I~si~f~p~~~~~~lvsgs~Dg~I~iwdi~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~~~~~l~ 164 (693)
...+ .+|.++|++++|+|+ +.+|++|+.|++|++||+... .....+.+|...|.+++|+| ++.+|+
T Consensus 101 ~~~l-~gh~~~V~~~~~~p~--~~~l~s~s~Dg~i~vwd~~~~----------~~~~~l~~h~~~V~~v~~~~-~~~~l~ 166 (410)
T 1vyh_C 101 KYAL-SGHRSPVTRVIFHPV--FSVMVSASEDATIKVWDYETG----------DFERTLKGHTDSVQDISFDH-SGKLLA 166 (410)
T ss_dssp SCEE-ECCSSCEEEEEECSS--SSEEEEEESSSCEEEEETTTC----------CCCEEECCCSSCEEEEEECT-TSSEEE
T ss_pred EEEE-CCCCCCEEEEEECCC--CCEEEEEECCCEEEEEECCCC----------CEEEEEECCCCCEEEEEECC-CCCEEE
T ss_conf 0766-166776899999699--998999938985999989999----------37788816678687899859-999999
Q ss_pred EEECCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCEEEEEECCCCCCEEEEEECCCCEEEEE
Q ss_conf 99289949998478998899998887653118984468953431289999415499998089994999996999199996
Q 005506 165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD 244 (693)
Q Consensus 165 Sgs~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~i~si~~sp~~~~~Latgs~Dg~I~iwD 244 (693)
+|+.|++|++||+.... .+.....|...|.+++|+|+ +.+|++|+.|+.|++||
T Consensus 167 sgs~D~~i~iwd~~~~~-------------------------~~~~~~~h~~~V~~v~~~p~-~~~l~s~s~D~~i~~wd 220 (410)
T 1vyh_C 167 SCSADMTIKLWDFQGFE-------------------------CIRTMHGHDHNVSSVSIMPN-GDHIVSASRDKTIKMWE 220 (410)
T ss_dssp EEETTSCCCEEETTSSC-------------------------EEECCCCCSSCEEEEEECSS-SSEEEEEETTSEEEEEE
T ss_pred EEECCCEEEEEECCCCC-------------------------EEEEECCCCCCEEEEEEECC-CCEEEEEECCCEEEEEE
T ss_conf 99189819999589982-------------------------66998289997789999679-99999996899699998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEEEECCCCC
Q ss_conf 69999975445679999864322567435688775546999992899989999569929999879999520795129985
Q 005506 245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDAS 324 (693)
Q Consensus 245 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fspdg~~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~ 324 (693)
++++.. +..+ .+|.. .|..+.|+|++.+|++++.|+.|++||+.++........+...+
T Consensus 221 ~~~~~~-------------~~~~-------~~h~~-~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v 279 (410)
T 1vyh_C 221 VQTGYC-------------VKTF-------TGHRE-WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 279 (410)
T ss_dssp TTTCCE-------------EEEE-------ECCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred CCCCCE-------------EEEE-------ECCCC-CEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCEE
T ss_conf 999948-------------9999-------27886-28999998999999999189909999898974366733787458
Q ss_pred EEEEECCC
Q ss_conf 13784668
Q 005506 325 KIMSFTPT 332 (693)
Q Consensus 325 ~~~~~sp~ 332 (693)
..+.|+|.
T Consensus 280 ~~~~~~~~ 287 (410)
T 1vyh_C 280 ECISWAPE 287 (410)
T ss_dssp EEEEECCS
T ss_pred EEEEECCC
T ss_conf 99998586
No 6
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=1.00 E-value=1 Score=249.07 Aligned_cols=230 Identities=24% Similarity=0.372 Sum_probs=188.0
Q ss_pred HCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCEEEEEEEECCCCCEEEEEECC
Q ss_conf 21430007841677857999997999999999599959999899980777734577745699999417999899999689
Q 005506 37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD 116 (693)
Q Consensus 37 i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~si~f~p~~~~~~lvsgs~D 116 (693)
...+.+..+|+||.+.|++++|+|++.+|+||+.|++|+|||+.+++....+ ..|...|.+++|+|+ +.+|++|+.|
T Consensus 53 ~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~-~~h~~~v~~~~~s~~--g~~las~~~d 129 (380)
T 3iz6_a 53 PTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAI-KLHCPWVMECAFAPN--GQSVACGGLD 129 (380)
T ss_dssp CCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEE-ECCCTTCCCCEECTT--SSEEEECCSS
T ss_pred CCEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEE-ECCCCCEEEEEECCC--CCEEEEEECC
T ss_conf 5213982000045347789999689998999918980999878888601488-559987899999899--9989995479
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEE
Q ss_conf 94999995889878878898877223215789757999922999599999289949998478998899998887653118
Q 005506 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196 (693)
Q Consensus 117 g~I~iwdi~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~~~~~l~Sgs~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~ 196 (693)
+.|++|++...... .........+.+|...|.++.|.|..+..|++++.|++|++||++++... .
T Consensus 130 ~~v~iw~~~~~~~~---~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~------------~ 194 (380)
T 3iz6_a 130 SACSIFNLSSQADR---DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRI------------S 194 (380)
T ss_dssp SCCEEEECCCCSSC---CCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEE------------E
T ss_pred CCEEEEECCCCCCC---CCCCCCEEECCCCCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCCEE------------E
T ss_conf 85899989777555---67733126406897546899996489978999779981999986779578------------9
Q ss_pred EEECCCCCEEEECCCCCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98446895343128999941549999808999499999699919999669999975445679999864322567435688
Q 005506 197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 276 (693)
Q Consensus 197 l~~~~~~~~~~l~~~~~~~~~i~si~~sp~~~~~Latgs~Dg~I~iwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (693)
.+ .......|...+.+++|+|.++.+|++|+.|+.|++||++... .++..+ .+
T Consensus 195 ~~--------~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~------------~~~~~~-------~~ 247 (380)
T 3iz6_a 195 IF--------GSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS------------RAVRTY-------HG 247 (380)
T ss_dssp EE--------CCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC------------CCCEEE-------CC
T ss_pred EE--------ECCCCCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCC------------CCEEEE-------CC
T ss_conf 96--------0566788756769999206999989999789869999788897------------346998-------87
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC
Q ss_conf 775546999992899989999569929999879999
Q 005506 277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 277 ~~~~~V~~i~fspdg~~L~sgs~Dg~I~iwDl~~~~ 312 (693)
|.. .|++++|+|++.+|++++.|+.|++||+.++.
T Consensus 248 h~~-~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~ 282 (380)
T 3iz6_a 248 HEG-DINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH 282 (380)
T ss_dssp CSS-CCCEEEECTTSSEEEEECSSSCEEEEETTTTE
T ss_pred CCC-CEEEEEEECCCCEEEEECCCCEEEEEECCCCC
T ss_conf 488-75799991699969998389969999888996
No 7
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=248.78 Aligned_cols=254 Identities=17% Similarity=0.281 Sum_probs=132.9
Q ss_pred EEEECCCCCCEEEEEECCC----CCEEEEEECCCCEEEEECCCCCE--EEEECCCCCCCEEEEEEEECCCCCEEEEEECC
Q ss_conf 0784167785799999799----99999995999599998999807--77734577745699999417999899999689
Q 005506 43 ERELEGHQGCVNAISWNSK----GSLLISGSDDTHINVWSYSSRKL--LHSIETGHSANVFCTKFVPETSDELVVSGAGD 116 (693)
Q Consensus 43 ~~~l~gH~~~V~~l~~s~~----g~~LaSgs~Dg~I~IWd~~~~~~--~~~l~~~h~~~I~si~f~p~~~~~~lvsgs~D 116 (693)
.+.+++|.+.|++++|+++ +.+|+||+.|++|+||++..... ...+ .+|...|.++.|+|+ +.++++++.|
T Consensus 25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l-~gh~~~v~~~~~~~~--~~~l~s~s~D 101 (321)
T 3ow8_A 25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSL-EGHQLGVVSVDISHT--LPIAASSSLD 101 (321)
T ss_dssp EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECSS--SSEEEEEETT
T ss_pred EEECCCCCCCEEEEEEECCCCCCCCEEEEECCCCCEEEEECCCCCEEEEEEE-CCCCCCEEEEEECCC--CCEEEEEECC
T ss_conf 5521568896799998248888888899984999899988989974366600-567788899998899--9989999379
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCC----------
Q ss_conf 9499999588987887889887722321578975799992299959999928994999847899889999----------
Q 005506 117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA---------- 186 (693)
Q Consensus 117 g~I~iwdi~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~~~~~l~Sgs~Dg~I~iwDlr~~~~~~~~---------- 186 (693)
++|++||+... ..+..+..|...+.+++|+| ++.+|++++.||.|++||++.+......
T Consensus 102 ~~i~lWd~~~~----------~~~~~~~~~~~~~~~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~ 170 (321)
T 3ow8_A 102 AHIRLWDLENG----------KQIKSIDAGPVDAWTLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSI 170 (321)
T ss_dssp SEEEEEETTTT----------EEEEEEECCTTCCCCEEECT-TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEE
T ss_pred CCEEEEECCCC----------CEEEEEECCCCCEEEEEECC-CCCEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEE
T ss_conf 80999978999----------79899937985679999999-99989998389919999867994667743899429999
Q ss_pred ---------CCCCCCCCEEEEECCCCCEEEECCCCCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCC
Q ss_conf ---------88876531189844689534312899994154999980899949999969991999966999997544567
Q 005506 187 ---------GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR 257 (693)
Q Consensus 187 ---------~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~i~si~~sp~~~~~Latgs~Dg~I~iwD~r~~~~~~~~~~~ 257 (693)
..+..+....+|++..+.. +.....|...|.+++|+|+ +.+|++|+.|+.|++||++.......
T Consensus 171 ~~spdg~~lasg~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~spd-~~~l~s~s~dg~i~iwd~~~~~~~~~---- 243 (321)
T 3ow8_A 171 AYSPDGKYLASGAIDGIINIFDIATGKL--LHTLEGHAMPIRSLTFSPD-SQLLVTASDDGYIKIYDVQHANLAGT---- 243 (321)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTTEE--EEEECCCSSCCCEEEECTT-SCEEEEECTTSCEEEEETTTCCEEEE----
T ss_pred EECCCCCEEEEECCCCEEEEEECCCCCE--EEEECCCCCCEEEEEECCC-CCEEEEECCCCEEEEEECCCCCEEEE----
T ss_conf 9989999999992898399999999909--9998025896018999489-99899990998099987899632589----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEEEECCCCCEEEEECCCCC
Q ss_conf 99998643225674356887755469999928999899995699299998799995207951299851378466878
Q 005506 258 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN 334 (693)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fspdg~~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~~~~~sp~~~ 334 (693)
+ .+|.. .|++++|+|++.+|++++.|+.|++||+.++.....+..+...+..++|+|+..
T Consensus 244 ---------~-------~~h~~-~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~ 303 (321)
T 3ow8_A 244 ---------L-------SGHAS-WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGS 303 (321)
T ss_dssp ---------E-------CCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred ---------E-------CCCCC-CEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCC
T ss_conf ---------8-------68888-268999979999899981898099994999888889837877389999989999
No 8
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=1.00 E-value=1 Score=246.54 Aligned_cols=233 Identities=17% Similarity=0.199 Sum_probs=189.1
Q ss_pred ECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEE---CCCCCCCEEEEEEEECCCCCEEEEEECCCCEEEE
Q ss_conf 4167785799999799999999959995999989998077773---4577745699999417999899999689949999
Q 005506 46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI---ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 122 (693)
Q Consensus 46 l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l---~~~h~~~I~si~f~p~~~~~~lvsgs~Dg~I~iw 122 (693)
...|...|++++|++++ .|++|+.||.|+|||+.+++.+..+ ..+|.+.|++++|+|+ +++|++|+.|++|++|
T Consensus 78 ~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spd--g~~l~sgs~d~~i~iw 154 (344)
T 4gqb_B 78 GVQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSS--GTQAVSGSKDICIKVW 154 (344)
T ss_dssp EEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTT--SSEEEEEETTSCEEEE
T ss_pred EECCCCCEEEEEEECCC-EEEEEECCCEEEEEECCCCCCEEEEECCCCCCCCCEEEEEECCC--CCEEEEEECCCEEEEE
T ss_conf 60367987899992998-29999897989999653887435860134678997899999899--8999999498939999
Q ss_pred ECCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 95889878878898877223215789757999922999599999289949998478998899998887653118984468
Q 005506 123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202 (693)
Q Consensus 123 di~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~~~~~l~Sgs~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~ 202 (693)
|+.+. +++..+.+|...|.+++|+|.+..+|++++.|++|++||+++++..
T Consensus 155 d~~~~----------~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~------------------- 205 (344)
T 4gqb_B 155 DLAQQ----------VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPA------------------- 205 (344)
T ss_dssp ETTTT----------EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCE-------------------
T ss_pred ECCCC----------CEEEEECCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCEE-------------------
T ss_conf 99999----------6999975768855788865899974011034435510234455200-------------------
Q ss_pred CCEEEECCCCCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 95343128999941549999808999499999699919999669999975445679999864322567435688775546
Q 005506 203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL 282 (693)
Q Consensus 203 ~~~~~l~~~~~~~~~i~si~~sp~~~~~Latgs~Dg~I~iwD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 282 (693)
.......+...+.+++|+|.++.+|++|+.|+.|++||+++++.+..+ .+|.. .|
T Consensus 206 ----~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~--------------------~~h~~-~v 260 (344)
T 4gqb_B 206 ----SQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSS--------------------AVHSQ-CV 260 (344)
T ss_dssp ----EECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEE--------------------ECCSS-CE
T ss_pred ----EEEECCEEECCCEEEEECCCCCCCEEEECCCCCEEEEECCCCCEEEEE--------------------CCCCC-CE
T ss_conf ----111010000121235661799960588615871898989999598998--------------------37889-98
Q ss_pred EEEEECCCC-CEEEEEECCCCEEEEECCCCCCCEEEEECCCCCEEEEECCCCCCC
Q ss_conf 999992899-989999569929999879999520795129985137846687852
Q 005506 283 THVTFSPNG-EEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGL 336 (693)
Q Consensus 283 ~~i~fspdg-~~L~sgs~Dg~I~iwDl~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 336 (693)
++++|+|++ .+|++++.|+.|++||+.+++ ......|...+..++|+|+...+
T Consensus 261 ~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~-~~~~~~H~~~V~~v~~sp~~~~l 314 (344)
T 4gqb_B 261 TGLVFSPHSVPFLASLSEDCSLAVLDSSLSE-LFRSQAHRDFVRDATWSPLNHSL 314 (344)
T ss_dssp EEEEECSSSSCCEEEEETTSCEEEECTTCCE-EEEECCCSSCEEEEEECSSSTTE
T ss_pred EEEEECCCCCEEEEEEECCCEEEEEECCCCC-EEEECCCCCCEEEEEEECCCCEE
T ss_conf 8999926999099999389949999999996-99972889977899991799969
No 9
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=1.00 E-value=1 Score=244.89 Aligned_cols=247 Identities=14% Similarity=0.184 Sum_probs=193.2
Q ss_pred CCCCCCCCCHHHHCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCEEEEEEEEC
Q ss_conf 76763002311021430007841677857999997999999999599959999899980777734577745699999417
Q 005506 25 DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 104 (693)
Q Consensus 25 ~~~~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~I~si~f~p~ 104 (693)
..+..+++|+ +........+.+|..+|++++|++++++|++|+.|+.|++||+.+++.+..+ .+|...|.+++|+|+
T Consensus 32 ~~dg~v~lWd--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~ 108 (304)
T 2ynn_A 32 LYSGRVELWN--YETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF-EAHPDYIRSIAVHPT 108 (304)
T ss_dssp ETTSEEEEEE--TTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSS
T ss_pred CCCCCEEEEE--CCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEECCCCCEEEEE-ECCCCCEEEEEECCC
T ss_conf 2799699987--8888266776056774889999689998999889997999999999678998-079980899999599
Q ss_pred CCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCC
Q ss_conf 99989999968994999995889878878898877223215789757999922999599999289949998478998899
Q 005506 105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP 184 (693)
Q Consensus 105 ~~~~~lvsgs~Dg~I~iwdi~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~~~~~l~Sgs~Dg~I~iwDlr~~~~~~ 184 (693)
+.+|++|+.|++|++||+.... .....+.+|...|.+++|+|.++.+|++++.|++|++||++......
T Consensus 109 --~~~l~sgs~D~~v~lWd~~~~~---------~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~ 177 (304)
T 2ynn_A 109 --KPYVLSGSDDLTVKLWNWENNW---------ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177 (304)
T ss_dssp --SSEEEEEETTSCEEEEEGGGTT---------EEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSE
T ss_pred --CCEEEEECCCCEEEEEECCCCC---------CHHHHHCCCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCCC
T ss_conf --9999998799819999899992---------23101056689579999888999989999189839999899997663
Q ss_pred CC----------------------CCCCCCCCEEEEECCCCCEEEECCCCCCCCCEEEEEECCCCCCEEEEEECCCCEEE
Q ss_conf 99----------------------88876531189844689534312899994154999980899949999969991999
Q 005506 185 PA----------------------GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARL 242 (693)
Q Consensus 185 ~~----------------------~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~i~si~~sp~~~~~Latgs~Dg~I~i 242 (693)
.. ..+..+....+|++..+.. +.....|...+.+++|+|+ +.+|++|+.|+.|++
T Consensus 178 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~--~~~~~~h~~~v~~~~~~p~-~~~l~s~s~Dg~i~i 254 (304)
T 2ynn_A 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC--VATLEGHMSNVSFAVFHPT-LPIIISGSEDGTLKI 254 (304)
T ss_dssp EEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEE--EEEEECCSSCEEEEEECSS-SSEEEEEETTSCEEE
T ss_pred EECCCCCCCEEEEEEEECCCCCEEEEECCCCEEEEEECCCCCC--CEEECCCCCCEEEEEECCC-CCEEEEECCCCEEEE
T ss_conf 3216874757789999869999999986999199996789860--2464798888899998899-998999938995999
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC--EEEEEECCCCEEEEECCC
Q ss_conf 96699999754456799998643225674356887755469999928999--899995699299998799
Q 005506 243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE--EVLLSYSGEHVYLMDVNH 310 (693)
Q Consensus 243 wD~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fspdg~--~L~sgs~Dg~I~iwDl~~ 310 (693)
||.++.+....+ ..+.. .+.+++|+|++. +++++ .+..+.+|++.+
T Consensus 255 Wd~~~~~~~~~~--------------------~~~~~-~~~~~~~~~~~~~~~~asg-~~~g~~~~~~~~ 302 (304)
T 2ynn_A 255 WNSSTYKVEKTL--------------------NVGLE-RSWCIATHPTGRKNYIASG-FDNGFTVLSLGN 302 (304)
T ss_dssp EETTTCCEEEEE--------------------CCSSS-SEEEEEECTTCGGGCEEEE-ETTEEEEEECC-
T ss_pred EECCCCCEEEEC--------------------CCCCC-CEEEEEECCCCCCEEEEEE-CCCCEEEEEECC
T ss_conf 989987145644--------------------68986-0899998789981699996-389469998046
No 10
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=243.29 Aligned_cols=228 Identities=16% Similarity=0.173 Sum_probs=147.2
Q ss_pred CCCCCCHHHHCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC--EEEEECCCCCCCEEEEEEEECC
Q ss_conf 63002311021430007841677857999997999999999599959999899980--7777345777456999994179
Q 005506 28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPET 105 (693)
Q Consensus 28 ~~l~~~~~~i~~l~~~~~l~gH~~~V~~l~~s~~g~~LaSgs~Dg~I~IWd~~~~~--~~~~l~~~h~~~I~si~f~p~~ 105 (693)
..+.+|+ +...+...+|.+|.+.|++++|+|+|++||+|+.|++|+|||+.++. ....+ .+|.+.|.+++|+|+
T Consensus 39 ~~v~l~~--~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~-~~~~~~v~~v~fs~d- 114 (611)
T 1nr0_A 39 TSVYTVP--VGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTI-PVFSGPVKDISWDSE- 114 (611)
T ss_dssp TEEEEEE--TTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEE-ECSSSCEEEEEECTT-
T ss_pred CEEEEEC--CCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEEE-CCCCCCEEEEEECCC-
T ss_conf 9799945--787242737658998659999999996899994899789948989841566762-255784489998999-
Q ss_pred CCCEEEEEECC----CCEEEEECCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCC
Q ss_conf 99899999689----94999995889878878898877223215789757999922999599999289949998478998
Q 005506 106 SDELVVSGAGD----AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS 181 (693)
Q Consensus 106 ~~~~lvsgs~D----g~I~iwdi~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp~~~~~l~Sgs~Dg~I~iwDlr~~~ 181 (693)
+..|++++.+ +.|++||.. .....+.+|...|.+++|+|+.+..|++++.|++|++||....+
T Consensus 115 -g~~l~~~~~~~~~~~~v~~wd~~------------~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~ 181 (611)
T 1nr0_A 115 -SKRIAAVGEGRERFGHVFLFDTG------------TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK 181 (611)
T ss_dssp -SCEEEEEECCSSCSEEEEETTTC------------CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE
T ss_pred -CCEEEEEECCCCCEEEEEEEECC------------CCCCEECCCCCCCEEEEECCCCCEEEEEEECCCEEEEEECCCCE
T ss_conf -99799998997736699996389------------97632547889836999889998299999289809999799975
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 89999888765311898446895343128999941549999808999499999699919999669999975445679999
Q 005506 182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP 261 (693)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~i~si~~sp~~~~~Latgs~Dg~I~iwD~r~~~~~~~~~~~~~~~ 261 (693)
. +....+|...|.+++|+|+ +.+|++|+.|+.|++||...+.....+.
T Consensus 182 ~-------------------------~~~l~~H~~~V~~v~fspd-g~~las~s~D~~i~lwd~~~g~~~~~~~------ 229 (611)
T 1nr0_A 182 F-------------------------KSTFGEHTKFVHSVRYNPD-GSLFASTGGDGTIVLYNGVDGTKTGVFE------ 229 (611)
T ss_dssp E-------------------------EEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEECB------
T ss_pred E-------------------------EEEECCCCCCEEEEEECCC-CCEEEEEECCCCEEEEECCCCCEEEEEC------
T ss_conf 7-------------------------6652002571699999799-9989999899919998899982866513------
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC
Q ss_conf 864322567435688775546999992899989999569929999879999
Q 005506 262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312 (693)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~V~~i~fspdg~~L~sgs~Dg~I~iwDl~~~~ 312 (693)
.......+|.. .|++++|+|++++|++++.|+.|++||+.++.
T Consensus 230 -------~~~~~~~~h~~-~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~ 272 (611)
T 1nr0_A 230 -------DDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLK 272 (611)
T ss_dssp -------CTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred -------CCCCCCCCCCC-CEEEEEECCCCCEEEEEECCCEEEEEECCCCC
T ss_conf -------66432356678-78999997999999999089809999688870
Done!