BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005508
(693 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9T0J6|DUS3L_ARATH tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Arabidopsis
thaliana GN=At4g38890 PE=2 SV=2
Length = 691
Score = 916 bits (2368), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/692 (65%), Positives = 539/692 (77%), Gaps = 32/692 (4%)
Query: 16 ADSPPPQPNSTGVPVHNLTPEELVAKAIAPVKKQFLRPPPTRANQNDTVKYTNERSSQQH 75
A + P ++ V+ T EEL+ +++AP+KK+FL PPP + +VK + +
Sbjct: 18 AKAALPVQSTKQFSVYEATSEELIERSMAPIKKEFLCPPPP----SRSVKQNDAADVRAP 73
Query: 76 SSTLVKEKKSKRQLKRERQQEKKSASHLCPEVAKSGDVSSCPYKDKCRFSHDLDGFKAQK 135
S LV+EKKSKRQLKRER+++ S +LCP+VA++ DV SC YKDKCRF+HD++ FKAQK
Sbjct: 74 QSGLVQEKKSKRQLKRERREQ--STINLCPQVARTEDVDSCQYKDKCRFNHDIEAFKAQK 131
Query: 136 PDDLEGECPFLSSEGPCPYGLACRFSGTHRDVVDVAGSTNTLRKSSEVNGLNKDVQKLLW 195
DD+EG+CPF++S C YGL+CRF G+HRD+ G+++ ++ SE+N NK+ Q+LLW
Sbjct: 132 ADDIEGQCPFVASGMKCAYGLSCRFLGSHRDIT---GNSDD-KEKSEMNFFNKETQRLLW 187
Query: 196 KNKMKFPKADAKLKSLGLLGPAKSKMKVMEDKEQEGVVDSNNSHATNGNGCMKGTGDSVD 255
KNKM F ADAKLKSLGLLG AK + E + + NG + DS
Sbjct: 188 KNKMTFTNADAKLKSLGLLGHAK------KSNAAEEITAEKTQNGMNGTQATEVAVDSAV 241
Query: 256 ESECSPCVPEENNIVND------RPLKKAKSENVENCCSVEGDNGVSV----LEEDTRNN 305
SE + + ++ +I RP+KKAKSE+ +N S GD G LEE+T+ N
Sbjct: 242 SSEHTSEMIQDVDIPGPLETEEVRPMKKAKSEDQKN--SKTGDVGGVYDGVKLEEETKKN 299
Query: 306 TADTQPAAKIDD---ILPETDGSLKTHSREKK-LIDFREKLYLAPLTTVGNLPFRRVCKV 361
T A D+ + ETD SLK H REKK LIDFR+KLYLAPLTTVGNLPFRR+CKV
Sbjct: 300 GYPTSKANVEDEDSIKIVETDSSLKLHPREKKKLIDFRDKLYLAPLTTVGNLPFRRLCKV 359
Query: 362 LGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCT 421
LGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICG+YPDT++R VELID++CT
Sbjct: 360 LGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGSYPDTVSRVVELIDRECT 419
Query: 422 VDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNR 481
VDFIDINMGCPID+VVNK AGS LL KP+RMK I+E +S V+ PITIKVRT +FEGKNR
Sbjct: 420 VDFIDINMGCPIDMVVNKSAGSALLNKPLRMKNIVEVSSSIVETPITIKVRTAFFEGKNR 479
Query: 482 IDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLD 541
IDSLIADIG WGA+AVT+HGR+RQQRYSK ADWDYIYQC + A+ +LQV+GNGD+YSYLD
Sbjct: 480 IDSLIADIGNWGATAVTIHGRSRQQRYSKSADWDYIYQCTKNATTNLQVIGNGDVYSYLD 539
Query: 542 WNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGS 601
WNKHKSDCPEL+SCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDF RFGL+HWGS
Sbjct: 540 WNKHKSDCPELSSCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFVRFGLQHWGS 599
Query: 602 DKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADW 661
D KGVETTRHFLLEWLSYT RYIPVGLLDVIPQ++NWRPP+Y GRDDLETLM S+SA DW
Sbjct: 600 DTKGVETTRHFLLEWLSYTFRYIPVGLLDVIPQQINWRPPSYFGRDDLETLMMSESAGDW 659
Query: 662 IRISEMLLGKVPDGFTFAPKHKSNAYDRAENG 693
+RISEMLLGKVP+GFTFAPKHKSNAYDRAENG
Sbjct: 660 VRISEMLLGKVPEGFTFAPKHKSNAYDRAENG 691
>sp|Q7XT07|DUS3L_ORYSJ tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Oryza sativa
subsp. japonica GN=Os04g0117600 PE=2 SV=2
Length = 685
Score = 878 bits (2269), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/667 (65%), Positives = 503/667 (75%), Gaps = 22/667 (3%)
Query: 36 EELVAKAIAPVKKQFLRPPPTRANQNDTVKYTNERSSQQHSSTLVKEKKSKRQLKRERQQ 95
EELVA+A+APVK FLRPP + D K +V EKKSKRQLKRER+Q
Sbjct: 32 EELVARAVAPVKPAFLRPPLSATPPKDEGKANG-------GGAVVAEKKSKRQLKRERKQ 84
Query: 96 EKKSASHLCPEVAKSGDVSSCPYKDKCRFSHDLDGFKAQKPDDLEGECPFLSSEGPCPYG 155
E+KS+SHLC EV KSG+VSSC Y D CRFSHD+D + AQKP DLEG CPF + + CPYG
Sbjct: 85 EQKSSSHLCIEVGKSGNVSSCKYGDSCRFSHDIDAYLAQKPADLEGTCPFTNLDQLCPYG 144
Query: 156 LACRFSGTHRDVVDVAGSTNTLRKSSEVNGLNKDVQKLLWKNKMKFPKADAKLKSLGLLG 215
L CRF GTH+D+ +G+ L + E+N LNKD+QKLLWKNK KFPKA A++K LGL
Sbjct: 145 LTCRFLGTHKDIHAASGN---LSEKHEINALNKDIQKLLWKNKYKFPKASAQIKLLGLKE 201
Query: 216 PAKSKMKVMEDKEQ------EGVVDSNNSHATN---GNGCMKGTGDSVDESECSPCVPEE 266
KSK D ++ +G D N N C + +D SE P +
Sbjct: 202 VIKSKPDAANDDKKVNHDNLDGNDDENKEPLCNPPVNAECDSTLCEELDRSEGEPLIDNS 261
Query: 267 NNIVNDRPLKKAKSENVENCCSVEGDNGVSVLEEDTRNNTADTQPAAKIDDILPETDGSL 326
V RP KK+K E+ E G + ED N + +P+ TD
Sbjct: 262 IPCVEPRPTKKSKVESDEIDKHGAGTLNTNTESEDP-NLSNGLEPSNNSSSC--RTDLIT 318
Query: 327 KTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWA 386
H REKK+IDFREKLYLAPLTTVGNLPFRR+CK LGAD+TCGEMAMCTNLLQGQASEWA
Sbjct: 319 TPHLREKKIIDFREKLYLAPLTTVGNLPFRRLCKTLGADITCGEMAMCTNLLQGQASEWA 378
Query: 387 LLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLL 446
LLRRHSSEDLFGVQICGAYPDT+ARTVEL+D +C+VDFIDINMGCPIDIVVNKGAGS LL
Sbjct: 379 LLRRHSSEDLFGVQICGAYPDTVARTVELVDNECSVDFIDINMGCPIDIVVNKGAGSSLL 438
Query: 447 TKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQ 506
TKPMR+K I++A S +KP+T+KVRT +FEG+NR DS+++DI WGASA+TVHGR+RQQ
Sbjct: 439 TKPMRIKSIVQAASTVTEKPLTVKVRTAFFEGRNRADSIVSDIYDWGASAITVHGRSRQQ 498
Query: 507 RYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPW 566
RYSKLADWDYIYQCA+KA D L V+GNGD++S+ DWNKH S C ++++ MIARGALIKPW
Sbjct: 499 RYSKLADWDYIYQCAQKAPDQLHVVGNGDVFSFTDWNKHVSGCSKISTSMIARGALIKPW 558
Query: 567 IFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPV 626
IFTE+KEQRHWDITSGER NI+KDF FGLEHWGSD KGVETTR+FLLEWLSYTCRYIPV
Sbjct: 559 IFTEVKEQRHWDITSGERFNILKDFVSFGLEHWGSDSKGVETTRYFLLEWLSYTCRYIPV 618
Query: 627 GLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNA 686
GLLDVIPQRLNWRPP+Y GRDDLETLM SDSAADWIRISEMLLGKVP+GFTF PKHKSNA
Sbjct: 619 GLLDVIPQRLNWRPPSYCGRDDLETLMISDSAADWIRISEMLLGKVPEGFTFTPKHKSNA 678
Query: 687 YDRAENG 693
YDRAENG
Sbjct: 679 YDRAENG 685
>sp|Q3KRC5|DUS3L_RAT tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Rattus
norvegicus GN=Dus3l PE=2 SV=1
Length = 640
Score = 521 bits (1342), Expect = e-147, Method: Compositional matrix adjust.
Identities = 280/649 (43%), Positives = 375/649 (57%), Gaps = 82/649 (12%)
Query: 55 PTRANQNDTVKYTNERSSQQHSSTLVKEKKSKRQLKRERQQEKKSASH----------LC 104
PT K Q++ T V + +RQ+ + + + KS H LC
Sbjct: 57 PTEGPAEPEAKRIRLEDGQENGKTEVAVESHERQVPKRARGQNKSRPHMKPAHYDKERLC 116
Query: 105 PEVAKSGDVSSCPYKDKCRFSHDLDGFKAQKPDDLEGECPFLSSEGPCPYGLACRFSGTH 164
P + + + C + D+CRF HD+ + KP DL C ++ G CPY + CRF+G H
Sbjct: 117 PSLLQE-SATPCAFGDRCRFLHDVGRYLETKPADLGPHCVLFNTFGRCPYSMTCRFAGAH 175
Query: 165 -----RDVVDVAGSTNTLRKSSEVNGLNKDVQKLLWKNKMKFPKADAKLKSLGLLGPAKS 219
+++V + S NGL++ +Q+ L K ++ F +A+ L
Sbjct: 176 LGPEGQNLVQEEVVARCAQLPSVRNGLDRALQQQLRKRQVCFERAEQAL----------- 224
Query: 220 KMKVMEDKEQEGVVDSNNSHATNGNGCMKGTGDSVDESECSPCVPEENNIVNDRPLKKAK 279
SH T G P + E+ + P +
Sbjct: 225 ------------------SHLTQGP---------------MPTIAPESTVATLTPKHSS- 250
Query: 280 SENVENCCSVEGDNGVSVLEEDTRNNTADTQPAAKIDDILPETDGSL-KTHSREKKLIDF 338
C V+ DN V + R + + P TD + + EKK +D
Sbjct: 251 -------CHVQLDN---VGGDGARQGSP-------VPTCGPLTDEDVVRLRPCEKKRLDI 293
Query: 339 REKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFG 398
KLYLAPLTT GNLPFRR+CK GADVTCGEMAMCTNLLQGQ SEWALL+RH ED+FG
Sbjct: 294 SGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAMCTNLLQGQMSEWALLKRHPCEDIFG 353
Query: 399 VQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEA 458
VQ+ GA+PDT+ + EL+++ VDF+DIN+GCPID+V KG G L+ + + + I+
Sbjct: 354 VQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGGGCALMNRSAKFQQIVRG 413
Query: 459 TSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIY 518
+ +D P+T+K+RTG E + L+ ++ WG + VT+HGR+R+QRY++LADW YI
Sbjct: 414 MNEVLDVPLTVKMRTGVQERVSLAHRLLPELRNWGVALVTLHGRSREQRYTRLADWPYIE 473
Query: 519 QCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWD 578
QCA+ AS + + GNGDI S+ D N +A M+ARGAL+KPW+FTEIKEQRHWD
Sbjct: 474 QCAKVAS-PMPLFGNGDILSFEDANCAMQT--GVAGIMVARGALLKPWLFTEIKEQRHWD 530
Query: 579 ITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNW 638
I+S ERL+I++DF +GLEHWGSD +GVE TR FLLEWLS+ CRY+PVGLL+ +PQR+N
Sbjct: 531 ISSSERLDILRDFTHYGLEHWGSDTQGVERTRRFLLEWLSFLCRYVPVGLLERLPQRINE 590
Query: 639 RPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAY 687
RPP Y GRD LETLMAS AADWIRISEMLLG VP GF F PKHK+NAY
Sbjct: 591 RPPYYLGRDYLETLMASQQAADWIRISEMLLGPVPPGFVFLPKHKANAY 639
>sp|Q7ZWS1|DUS3L_XENLA tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Xenopus laevis
GN=dus3l PE=2 SV=1
Length = 640
Score = 484 bits (1245), Expect = e-135, Method: Compositional matrix adjust.
Identities = 235/413 (56%), Positives = 298/413 (72%), Gaps = 9/413 (2%)
Query: 279 KSENVENCCSVEGDNGVS---VLEEDTRNNTADTQPAAKIDDILPETDGS-LKTHSREKK 334
KS+ C GD+ V++ED+ TQ + I + TD +K EKK
Sbjct: 232 KSDKYLKLCFKSGDSSKMKNPVVKEDSAVQV--TQKDSPITTVGAVTDEDVIKLRPCEKK 289
Query: 335 LIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSE 394
IDFR KLYLAPLTT GNLPFRR+CK LGAD+TCGEMAMCTNLLQGQ SEWALL+RH SE
Sbjct: 290 TIDFRNKLYLAPLTTCGNLPFRRICKRLGADITCGEMAMCTNLLQGQPSEWALLKRHHSE 349
Query: 395 DLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKG 454
D+FGVQ+ GA+PDT+ + EL+++ VDF+DIN+GCPID+V KG G L+ + + +
Sbjct: 350 DIFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGGGCGLMNRTNKFEQ 409
Query: 455 IIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADW 514
I++ + +D P+T+K+RTG E N LI ++ WG S VT+HGR+R+QRY+KLA+W
Sbjct: 410 IVKGMNSVLDVPLTVKIRTGVQEKVNIAHKLIPNLRDWGVSLVTLHGRSREQRYTKLANW 469
Query: 515 DYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQ 574
+YI QCA+ AS + + GNGDI SY D N+ +A M+ARGAL KPW+FTEIKEQ
Sbjct: 470 EYIDQCAKIAS-PVPLFGNGDIISYEDANRALQ--TGVAGVMLARGALFKPWLFTEIKEQ 526
Query: 575 RHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQ 634
RHWDI+S ER +I+KDF +GLEHWGSD +GVE TR F+LEWLS+ CRYIPVGLL+ +PQ
Sbjct: 527 RHWDISSTERFDILKDFTNYGLEHWGSDCQGVEKTRKFMLEWLSFLCRYIPVGLLEHVPQ 586
Query: 635 RLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAY 687
++N RPP Y GRD LETLMAS + DWI+ISEMLLG VP FTF PKHK+N+Y
Sbjct: 587 KINERPPYYMGRDYLETLMASQNVTDWIKISEMLLGPVPPNFTFLPKHKANSY 639
Score = 73.9 bits (180), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 79/160 (49%), Gaps = 10/160 (6%)
Query: 81 KEKKSKRQLKRERQQEKKSA---SHLCPEVAKSGDVSSCPYKDKCRFSHDLDGFKAQKPD 137
+EKK R + R K S + LCP V + S C + DKC+FSHD+ + +QKP+
Sbjct: 103 QEKKRARGQNKSRPHMKHSQFEENKLCPSVTQEC-ASKCFFGDKCKFSHDVAKYVSQKPE 161
Query: 138 DLEGECPFLSSEGPCPYGLACRFSGTH-----RDVVDVAGSTNTLRKSSEVNGLNKDVQK 192
D+ C + G C YG+ CRF+ +H +++++ K N L+K +++
Sbjct: 162 DIRPNCHLYETFGKCIYGVTCRFAKSHLGEDFKNIINEELMKEWEGKVLVKNSLDKSLKE 221
Query: 193 LLWKNKMKFPKADAKLKSLGLLGPAKSKMKVMEDKEQEGV 232
L K K+ F K+D LK L SKMK KE V
Sbjct: 222 QLRKKKVVFEKSDKYLK-LCFKSGDSSKMKNPVVKEDSAV 260
>sp|Q28BT8|DUS3L_XENTR tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Xenopus
tropicalis GN=dus3l PE=2 SV=2
Length = 639
Score = 481 bits (1237), Expect = e-134, Method: Compositional matrix adjust.
Identities = 228/399 (57%), Positives = 292/399 (73%), Gaps = 13/399 (3%)
Query: 289 VEGDNGVSVLEEDTRNNTADTQPAAKIDDILPETDGSLKTHSREKKLIDFREKLYLAPLT 348
V+ DN V+++D+ T A D+ L +K EKK IDFR KLYLAPLT
Sbjct: 253 VKEDNAAQVVQKDSPVTTV----GAVTDEDL------VKLRPCEKKTIDFRNKLYLAPLT 302
Query: 349 TVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDT 408
T GNLPFRR+CK GAD+TCGEMAMCTNLLQGQ SEWALL+RH SED+FGVQ+ GA+PDT
Sbjct: 303 TCGNLPFRRLCKRFGADITCGEMAMCTNLLQGQPSEWALLKRHHSEDIFGVQLEGAFPDT 362
Query: 409 LARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPIT 468
+ + EL+++ VDF+DIN+GCPID+V KG G L+ + + + I++ + +D P+T
Sbjct: 363 MTKCAELLNRTIDVDFVDINVGCPIDLVYKKGGGCGLMNRTNKFEQIVKGMNSVLDVPLT 422
Query: 469 IKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDL 528
+K+RTG E N LI ++ WG S VT+HGR+R+QRY+KLADW+YI QCA AS L
Sbjct: 423 VKIRTGVQEKINIAHKLIPNLRDWGVSLVTLHGRSREQRYTKLADWEYIAQCADIAS-PL 481
Query: 529 QVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIM 588
+ GNGDI SY D N+ ++ M+ARGAL+KPW+FTEIKEQRHWDI+S ER +I+
Sbjct: 482 PLFGNGDIISYEDANRALQ--TGVSGIMLARGALLKPWLFTEIKEQRHWDISSTERFDIL 539
Query: 589 KDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDD 648
KDF +GLEHWGSD +GVE TR F+LEWLS+ CRYIP+GLL+ +PQ++N RPP Y GRD
Sbjct: 540 KDFTNYGLEHWGSDCQGVEKTRRFMLEWLSFLCRYIPIGLLEHVPQKINERPPYYMGRDY 599
Query: 649 LETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAY 687
+ETLMAS + DWI+ISEMLLG VP F+F PKHK+N+Y
Sbjct: 600 METLMASQNVTDWIKISEMLLGPVPPNFSFLPKHKANSY 638
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 83/172 (48%), Gaps = 10/172 (5%)
Query: 81 KEKKSKRQLKRERQQEKKSA---SHLCPEVAKSGDVSSCPYKDKCRFSHDLDGFKAQKPD 137
+EKK R + R K S + LCP V + S C + DKC+F HD+ + ++KP+
Sbjct: 102 QEKKRARGQNKSRPHMKHSQFEENKLCPSVTQEC-ASKCFFGDKCKFLHDVAKYVSEKPE 160
Query: 138 DLEGECPFLSSEGPCPYGLACRFSGTH-----RDVVDVAGSTNTLRKSSEVNGLNKDVQK 192
D+ C + G C YG+ CRF+ +H +++++ + N L+K +++
Sbjct: 161 DIRPNCYLYETFGKCIYGVTCRFAKSHLGDNFKNLINEELMKQWEGQVLVKNSLDKSLKE 220
Query: 193 LLWKNKMKFPKADAKLKSLGLLGPA-KSKMKVMEDKEQEGVVDSNNSHATNG 243
L K K+ F K D LK G + K K V+++ VV ++ T G
Sbjct: 221 QLRKRKVVFEKTDKYLKLCNKSGDSLKIKSPVVKEDNAAQVVQKDSPVTTVG 272
>sp|Q96G46|DUS3L_HUMAN tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Homo sapiens
GN=DUS3L PE=1 SV=2
Length = 650
Score = 478 bits (1229), Expect = e-133, Method: Compositional matrix adjust.
Identities = 222/380 (58%), Positives = 280/380 (73%), Gaps = 4/380 (1%)
Query: 309 TQPAAKIDDILPETDGSL-KTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVT 367
T P++ + P TD + + EKK +D R KLYLAPLTT GNLPFRR+CK GADVT
Sbjct: 273 TPPSSPVRTCGPLTDEDVVRLRPCEKKRLDIRGKLYLAPLTTCGNLPFRRICKRFGADVT 332
Query: 368 CGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDI 427
CGEMA+CTNLLQGQ SEWALL+RH ED+FGVQ+ GA+PDT+ + EL+ + VDF+DI
Sbjct: 333 CGEMAVCTNLLQGQMSEWALLKRHQCEDIFGVQLEGAFPDTMTKCAELLSRTVEVDFVDI 392
Query: 428 NMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIA 487
N+GCPID+V KG G L+ + + + I+ + +D P+T+K+RTG E N L+
Sbjct: 393 NVGCPIDLVYKKGGGCALMNRSTKFQQIVRGMNQVLDVPLTVKIRTGVQERVNLAHRLLP 452
Query: 488 DIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKS 547
++ WG + VT+HGR+R+QRY+KLADW YI +C + AS + + GNGDI S+ D N+
Sbjct: 453 ELRDWGVALVTLHGRSREQRYTKLADWQYIEECVQAAS-PMPLFGNGDILSFEDANRAMQ 511
Query: 548 DCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVE 607
+ MIARGAL+KPW+FTEIKEQRHWDI+S ERL+I++DF +GLEHWGSD +GVE
Sbjct: 512 T--GVTGIMIARGALLKPWLFTEIKEQRHWDISSSERLDILRDFTNYGLEHWGSDTQGVE 569
Query: 608 TTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEM 667
TR FLLEWLS+ CRY+PVGLL+ +PQR+N RPP Y GRD LETLMAS AADWIRISEM
Sbjct: 570 KTRRFLLEWLSFLCRYVPVGLLERLPQRINERPPYYLGRDYLETLMASQKAADWIRISEM 629
Query: 668 LLGKVPDGFTFAPKHKSNAY 687
LLG VP F F PKHK+NAY
Sbjct: 630 LLGPVPPSFAFLPKHKANAY 649
Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 86/188 (45%), Gaps = 17/188 (9%)
Query: 101 SHLCPEVAKSGDVSSCPYKDKCRFSHDLDGFKAQKPDDLEGECPFLSSEGPCPYGLACRF 160
+ LCP + + + C + D+CRF HD+ + KP DL C + G CPYG+ CRF
Sbjct: 121 NRLCPSLIQE-SAAKCFFGDRCRFLHDVGRYLETKPADLGPRCVLFETFGRCPYGVTCRF 179
Query: 161 SGTH-----RDVVDVAGSTNTLRKSSEVNGLNKDVQKLLWKNKMKFPKADAKLKSLGLLG 215
+G H +++V + + S NGL+K +Q+ L K +++F +A+ L+ G
Sbjct: 180 AGAHLRPEGQNLVQEELAARGTQPPSIRNGLDKALQQQLRKREVRFERAEQALRRFS-QG 238
Query: 216 PAKSKMKVMEDKEQEGVVDSNNSHATNGNGCMKGTGDSVDESE----CSPCVPEENNIVN 271
P + V E EG N A G G S S C P E ++V
Sbjct: 239 PTPA-AAVPEGTAAEGAPRQENCGAQQ---VPAGPGTSTPPSSPVRTCGPLTDE--DVVR 292
Query: 272 DRPLKKAK 279
RP +K +
Sbjct: 293 LRPCEKKR 300
>sp|Q91XI1|DUS3L_MOUSE tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Mus musculus
GN=Dus3l PE=2 SV=1
Length = 637
Score = 474 bits (1219), Expect = e-132, Method: Compositional matrix adjust.
Identities = 218/356 (61%), Positives = 272/356 (76%), Gaps = 3/356 (0%)
Query: 332 EKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRH 391
EKK +D KLYLAPLTT GNLPFRR+CK GADVTCGEMA+CTNLLQGQ SEWALL+RH
Sbjct: 284 EKKRLDISGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQMSEWALLKRH 343
Query: 392 SSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMR 451
ED+FGVQ+ GA+PDT+ + EL+++ VDF+DIN+GCPID+V KG G L+ + +
Sbjct: 344 PCEDIFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGGGCALMNRSAK 403
Query: 452 MKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKL 511
+ I+ +G +D P+T+K+RTG E + L+ ++ WG + VT+HGR+R+QRY++L
Sbjct: 404 FQQIVRGVNGVLDVPLTVKMRTGVQERVSLAHRLLPELRDWGVALVTLHGRSREQRYTRL 463
Query: 512 ADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEI 571
ADW YI QCA+ AS + + GNGDI S+ D N +A M+ARGAL+KPW+FTEI
Sbjct: 464 ADWPYIEQCAKVAS-PMPLFGNGDILSFEDANCAMQT--GVAGIMVARGALLKPWLFTEI 520
Query: 572 KEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDV 631
KEQRHWDI+S ERL+I++DF +GLEHWGSD +GVE TR FLLEWLS+ CRY+PVGLL+
Sbjct: 521 KEQRHWDISSSERLDILRDFTHYGLEHWGSDTQGVERTRRFLLEWLSFLCRYVPVGLLER 580
Query: 632 IPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAY 687
PQR+N RPP Y GRD LETLMAS AADWIRISEMLLG VP GF F PKHK+NAY
Sbjct: 581 PPQRINERPPYYLGRDYLETLMASQQAADWIRISEMLLGPVPPGFVFLPKHKANAY 636
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 96/224 (42%), Gaps = 25/224 (11%)
Query: 73 QQHSSTLVKEKKSKRQLKRERQQEKKSASH----------LCPEVAKSGDVSSCPYKDKC 122
Q++ T V + +RQ+ + + + KS H LCP + + C + D+C
Sbjct: 72 QENGKTEVAIESRERQVPKRARGQNKSRPHVKPAHYDKDRLCPSFLQE-PATPCAFGDRC 130
Query: 123 RFSHDLDGFKAQKPDDLEGECPFLSSEGPCPYGLACRFSGTH-----RDVVDVAGSTNTL 177
RF HD+ + KP DL C + G CP+ + CRF+G H +++V
Sbjct: 131 RFLHDVGRYLETKPADLGPRCVLFETFGRCPFSMTCRFAGAHLGPEGQNLVQEEVVARCA 190
Query: 178 RKSSEVNGLNKDVQKLLWKNKMKFPKADAKLKSLGLLGPAKSKMK--VMEDKEQEGVVDS 235
+ S NGL++ +Q+ L K ++ F +A+ L L +S M V E
Sbjct: 191 QLPSVRNGLDRALQQQLRKRQVCFERAEQALNRL-----TQSPMPTVVPETTVAMATPKQ 245
Query: 236 NNSHATNGNGCMKGTGDSVDESECSPCVPEENNIVNDRPLKKAK 279
N+ HA GT S C P E +++ RP +K +
Sbjct: 246 NSCHAQLDTVGGAGTPQSSPVPTCGPLTDE--DVIRLRPCEKKR 287
>sp|Q54CU9|DUS3L_DICDI tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Dictyostelium
discoideum GN=dus3l PE=3 SV=1
Length = 671
Score = 433 bits (1113), Expect = e-120, Method: Compositional matrix adjust.
Identities = 202/368 (54%), Positives = 264/368 (71%), Gaps = 4/368 (1%)
Query: 321 ETDGSLKTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQG 380
E D + EKK I+F +L LAPLTTVGNLPFRR+CK LGAD+T GEMA+ T LL+G
Sbjct: 305 EIDIMTPLKANEKKRINFENQLILAPLTTVGNLPFRRICKRLGADITIGEMALTTKLLEG 364
Query: 381 QASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKG 440
SE ALL+RH ED FGVQICG+Y D + E I+ + DF+DIN GCPID+V N G
Sbjct: 365 TKSELALLKRHPCEDKFGVQICGSYVDAAVKCAEFIENEIDADFVDINSGCPIDLVCNMG 424
Query: 441 AGSCLLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVH 500
AG+ L+ +P +++ ++ S ++ P TIK+R G E LI +G WGA AVT+H
Sbjct: 425 AGAALMERPKKVEQLLRGISSSLSCPTTIKIRIGKSEDAPTAHKLIPSLGEWGACAVTLH 484
Query: 501 GRTRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARG 560
GR+R QRYS+LA+WDY+ QC+ +S + ++GNGDIY+Y D + D +++S MIARG
Sbjct: 485 GRSRAQRYSRLANWDYVKQCSEVSS--IPLIGNGDIYNYQDV-VNIYDSSKVSSIMIARG 541
Query: 561 ALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYT 620
ALIKPWIFTEIKE+R WDI++ ERL+ ++DFA +GL+HWGSD+ GV+ TR FLL WLS++
Sbjct: 542 ALIKPWIFTEIKEKREWDISASERLDFIRDFANYGLDHWGSDRIGVDNTRKFLLNWLSFS 601
Query: 621 CRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAP 680
RYIPVGLLD + +N RPPAY GR DLETL+AS DWI+I+EM LG V ++F P
Sbjct: 602 HRYIPVGLLDKV-HYMNERPPAYFGRSDLETLLASTQVKDWIKITEMFLGPVTSDYSFVP 660
Query: 681 KHKSNAYD 688
KH SN+Y+
Sbjct: 661 KHNSNSYE 668
>sp|A8NZY7|DUS3_COPC7 tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Coprinopsis cinerea
(strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003)
GN=DUS3 PE=3 SV=1
Length = 676
Score = 419 bits (1078), Expect = e-116, Method: Compositional matrix adjust.
Identities = 256/686 (37%), Positives = 345/686 (50%), Gaps = 124/686 (18%)
Query: 71 SSQQHSSTLVKEKKSKRQL--KRERQQEKKSASHLCPEVAKSGDVSSCPYKDKCRFSHDL 128
+ Q L K +K RQ K R + + LC +VA + C + CRF+HD+
Sbjct: 49 NGQPSRRALAKAQKKARQGANKGRRFGKVRDEVELCWKVANG---AICDFGTSCRFTHDI 105
Query: 129 DGFKAQKPDDLE---------------------------------GECPFLSSEGPCPYG 155
+ +KP DL +CP G C YG
Sbjct: 106 AEYIKEKPQDLRIPLLSEFKESPPYGPDLTVIGKPGKKHPNIDFSTKCPVHEESGECRYG 165
Query: 156 LACRFSGTH---------RDVVDVAGSTNTLRKSSEVNGLNKDVQKLLWKNKMKFPKADA 206
CR+ G H V D S E+N + DVQK L K P A A
Sbjct: 166 YKCRYMGGHALEDEEGNVTLVADEDKKAQVALTSHEINFVGGDVQKQLRSKKYPTPIASA 225
Query: 207 KLKSLGLLGPAKSKMKVMEDKEQ--EGVVDSNNSHATNGNGCMKGTGDSVDESECSPCVP 264
L+ L K M D+ Q + VV T+
Sbjct: 226 YLEEL----------KSMNDEAQKPQAVVSETTVMETD---------------------- 253
Query: 265 EENNIVNDRPLKKAKSENVENCCSVEGDNGV--SVLEEDTRNNTADTQPAAKIDDILPET 322
+A+ + + S NG + EE Q D+
Sbjct: 254 ------------EAQPSSTDAVASEATQNGTEPAPAEEVISKRVGGVQSGKDEPDV---- 297
Query: 323 DGSLKTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQA 382
EK+ +D++ K YLAPLTTVGNLPFRR+C LGAD+TCGEM + T+ L G
Sbjct: 298 ----PMRFSEKRRLDWKGKTYLAPLTTVGNLPFRRMCVKLGADITCGEMGLATSFLAGSK 353
Query: 383 SEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQ--CTVDFIDINMGCPIDIVVNKG 440
EW+L+RRH SE +FG+Q+ G P TL T E+I ++ VDF+D+N GCPID+V G
Sbjct: 354 EEWSLVRRHPSEKIFGIQVAGNKPHTLVPTAEVIAKEFPTGVDFVDLNCGCPIDLVFKAG 413
Query: 441 AGSCLLTKPMRMKGIIEATSGTVDK-PITIKVRTGYFEGKNRIDSLIADIGT-WGASAVT 498
+GS LL ++ II+ + + + P+T+K+RTG EG+N L+ I W ASA+T
Sbjct: 414 SGSALLDNAGKLGKIIQGMNRALGEIPLTVKIRTGVKEGRNNAHKLMPRISAEWSASAIT 473
Query: 499 VHGRTRQQRYSKLADWDYIYQC-----ARKASDDLQ---VLGNGDIYSYLDW----NKHK 546
+HGRTRQQRY+KLADWDYI +C AR+A +DL + G GD +S D+ N +
Sbjct: 474 LHGRTRQQRYTKLADWDYIKECVAAVRAREADEDLPPVPIFGGGDCFSSQDYWEKINNYG 533
Query: 547 SDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGV 606
D MI RGALIKPWIFTEIKE+R WDI++ ERL +++D+ +GL H+GSD GV
Sbjct: 534 VD-----GVMIGRGALIKPWIFTEIKERREWDISATERLQLIRDYVEYGLNHFGSDTAGV 588
Query: 607 ETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISE 666
TTR +L E LS+ RY+P+GLL+ +P ++N R PA+ GR DLETL+AS + DW++ISE
Sbjct: 589 NTTRRYLCEALSFQYRYVPIGLLERLPAKINERAPAFVGRSDLETLLASPDSQDWVKISE 648
Query: 667 MLLGKVPDGFTFAPKHKSNAYDRAEN 692
M LG P + F PKHKSNAY E
Sbjct: 649 MFLGPAPQSWVFTPKHKSNAYGSEEG 674
>sp|P0CN28|DUS3_CRYNJ tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=DUS3 PE=3 SV=1
Length = 725
Score = 408 bits (1048), Expect = e-113, Method: Compositional matrix adjust.
Identities = 252/648 (38%), Positives = 333/648 (51%), Gaps = 129/648 (19%)
Query: 119 KDKCRFSHDLDGFKAQKPDDL----------------EGE------------------CP 144
K CR++H +G+ KP+D+ EGE CP
Sbjct: 121 KGDCRYAHSWEGYFEVKPNDISYRPDWSLVGEAPFVVEGERVVGGEDVVGKTLDLDTVCP 180
Query: 145 FLSSEGPCPYGLACRFSGTHRDVVDVAGSTNTLR-------------------------- 178
L G CP+G CRF G H V VA + + +
Sbjct: 181 VLKDLGYCPFGWRCRFLGAH--VKRVAAAVDGEKEKEAGPEKRMGEWQVENWVQSEVENG 238
Query: 179 -KSSEVNGLNKDVQKLLWKNKMKFPKADAKLKSLGLLGPA----KSKMKVMEDKEQEGVV 233
K E N +V L ++ FP ++A LK + P K K K + V+
Sbjct: 239 WKQKETNWPEHEVLNALRRSTASFPFSEAYLKKVDPDKPFTLQNKKPTKQQPHKRKNNVL 298
Query: 234 DSNNSHATNGNGCMKGTGDSVDESECSPCVPEENNIVNDRPLKKAKSENVENCCSVEGDN 293
D A NG + GD +E N +N +EN
Sbjct: 299 DE--EEAANGPTGIPSAGD------------DEENAMN-------ATEN----------- 326
Query: 294 GVSVLEEDTRNNTADTQPAAKIDDILPETDGSLKTHSREKKLIDFREKLYLAPLTTVGNL 353
E + +P A + PE EK+ +++ YLAPLTTVGNL
Sbjct: 327 -----ERNEEKGKVYGEPEAIDVPLRPE----------EKRRLNWEGGRYLAPLTTVGNL 371
Query: 354 PFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTV 413
PFRR+C GA +T EMA+ L+ G EWAL+RRH SE +FGVQ+ G +P+ +
Sbjct: 372 PFRRLCVDYGATITVSEMALAQPLVYGAKEEWALVRRHESEKMFGVQVAGGFPNRMVPAA 431
Query: 414 ELIDQQCT----VDFIDINMGCPIDIVVNKGAGSCLLTKPMRM-KGIIEATSGTVDKPIT 468
E+I VDF+D+NMGCPID+V N+GAGS L+ P R+ K ++ D P+T
Sbjct: 432 EVIANTIGKGGGVDFVDVNMGCPIDLVFNQGAGSALMDSPGRLGKLLVGMNRALGDIPLT 491
Query: 469 IKVRTGYFEGKNRIDSLIADIGT-WGASAVTVHGRTRQQRYSKLADWDYIYQCA---RKA 524
+K RTG GK LI T WGA A+T+HGR+RQQRYSK ADW+YI C R++
Sbjct: 492 VKFRTGVAHGKPNAHKLIPRFVTEWGAGALTIHGRSRQQRYSKPADWEYIKTCVTALRES 551
Query: 525 SDD-----LQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDI 579
D + + GNGD +S + + + D + M+ARGALIKPWIFTEIKE+R WDI
Sbjct: 552 VADANLPPVPIFGNGDCFSAASYYE-EMDRSGVDGVMVARGALIKPWIFTEIKERREWDI 610
Query: 580 TSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWR 639
++ ERL +K FA FGL HWGSD +GV TTR FL E LS+ RYIP+GLL+ +P +LN R
Sbjct: 611 SAVERLEGIKKFAEFGLSHWGSDTQGVNTTRRFLCEALSFQHRYIPIGLLERLPAKLNER 670
Query: 640 PPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAY 687
PPAY GR++LETL+AS A DW++ISEM LGKV +GF+F PKHKSNAY
Sbjct: 671 PPAYRGRNELETLLASPFAGDWVKISEMFLGKVDEGFSFVPKHKSNAY 718
>sp|P0CN29|DUS3_CRYNB tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=DUS3 PE=3 SV=1
Length = 725
Score = 406 bits (1044), Expect = e-112, Method: Compositional matrix adjust.
Identities = 252/649 (38%), Positives = 334/649 (51%), Gaps = 131/649 (20%)
Query: 119 KDKCRFSHDLDGFKAQKPDDL----------------EGE------------------CP 144
K CR++H +G+ KP+D+ EGE CP
Sbjct: 121 KGDCRYAHSWEGYFEVKPNDISYRPDWSLVGEAPFVVEGERVVGGEDVVGKTLDLDTVCP 180
Query: 145 FLSSEGPCPYGLACRFSGTHRDVVDVAGSTNTLR-------------------------- 178
L G CP+G CRF G H V VA + + +
Sbjct: 181 VLKDLGYCPFGWRCRFLGAH--VKRVAAAVDGEKEKEAGPEKRMGEWQVENWVQSEVENG 238
Query: 179 -KSSEVNGLNKDVQKLLWKNKMKFPKADAKLKSLGLLGPA----KSKMKVMEDKEQEGVV 233
K E N +V L ++ FP ++A LK + P K K K + V+
Sbjct: 239 WKQKETNWPEHEVLNALRRSTASFPFSEAYLKKVDPDKPFTLQNKKPTKQQPHKRKNNVL 298
Query: 234 DSNNSHATNGNGCMKGTGDSVDESECSPCVPEENNIVNDRPLKKAKSENVENCCSVEGDN 293
D A NG + GD +E N +N +EN N
Sbjct: 299 DE--EEAANGPTGIPSAGD------------DEENAMN-------ATENERN-------- 329
Query: 294 GVSVLEEDTRNNTADTQPAAKIDDILPETDG-SLKTHSREKKLIDFREKLYLAPLTTVGN 352
EE + + ET+ + EK+ +++ YLAPLTTVGN
Sbjct: 330 -----EEKGK--------------VYGETEAIDVPLRPEEKRRLNWEGGRYLAPLTTVGN 370
Query: 353 LPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLART 412
LPFRR+C GA +T EMA+ L+ G EWAL+RRH SE +FGVQ+ G +P+ +
Sbjct: 371 LPFRRLCVDYGATITVSEMALAQPLVYGAKEEWALVRRHESEKMFGVQVAGGFPNRMVPA 430
Query: 413 VELIDQQCT----VDFIDINMGCPIDIVVNKGAGSCLLTKPMRM-KGIIEATSGTVDKPI 467
E+I VDF+D+NMGCPID+V N+GAGS L+ P R+ K ++ D P+
Sbjct: 431 AEVIANTIGKGGGVDFVDVNMGCPIDLVFNQGAGSALMDSPGRLGKLLVGMNRALGDIPL 490
Query: 468 TIKVRTGYFEGKNRIDSLIADIGT-WGASAVTVHGRTRQQRYSKLADWDYIYQCA---RK 523
T+K RTG GK LI T WGA A+T+HGR+RQQRYSK ADW+YI C R+
Sbjct: 491 TVKFRTGVAHGKPNAHKLIPRFVTEWGAGALTIHGRSRQQRYSKPADWEYIKTCVTALRE 550
Query: 524 ASDD-----LQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWD 578
+ D + + GNGD +S + + + D + M+ARGALIKPWIFTEIKE+R WD
Sbjct: 551 SVADANLPPVPIFGNGDCFSAASYYE-EMDRSGVDGVMVARGALIKPWIFTEIKERREWD 609
Query: 579 ITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNW 638
I++ ERL +K FA FGL HWGSD +GV TTR FL E LS+ RYIP+GLL+ +P +LN
Sbjct: 610 ISAVERLEGIKKFAEFGLSHWGSDTQGVNTTRRFLCEALSFQHRYIPIGLLERLPAKLNE 669
Query: 639 RPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAY 687
RPPAY GR++LETL+AS A DW++ISEM LGKV +GF+F PKHKSNAY
Sbjct: 670 RPPAYRGRNELETLLASPFAGDWVKISEMFLGKVDEGFSFVPKHKSNAY 718
>sp|Q4P1U2|DUS3_USTMA tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=DUS3 PE=3 SV=1
Length = 867
Score = 387 bits (995), Expect = e-106, Method: Compositional matrix adjust.
Identities = 187/391 (47%), Positives = 256/391 (65%), Gaps = 27/391 (6%)
Query: 322 TDGSL---KTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLL 378
T+GS+ + EK+ +++R +LYLAPLTT GNLPFRR+C G+D+ CGEM + + L
Sbjct: 469 TNGSIDLARIRPSEKRRLNWRGELYLAPLTTTGNLPFRRICTGYGSDIHCGEMGLAESFL 528
Query: 379 QGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCT--VDFIDINMGCPIDIV 436
G A+EW+L+RRH SE +FG Q+CG PD L E + + +DF+DIN GCPID+V
Sbjct: 529 HGNAAEWSLVRRHESERIFGTQLCGGKPDLLVPVAEALKAEVGDGLDFVDINCGCPIDLV 588
Query: 437 VNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNRIDSLIADIGT-WGA 494
NKGAGS LL P ++ I+ + + D P+TIK+RTG K + A T W
Sbjct: 589 FNKGAGSALLDHPTKLSKIVRGMNAVLGDTPLTIKLRTGT-GAKQTTHKIFAKAQTEWRV 647
Query: 495 SAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQ------------------VLGNGDI 536
+A T+HGR+R+QRY ADW YI CA + + V GNGD+
Sbjct: 648 AAATLHGRSRKQRYKNDADWGYIATCANTLRESVSEWNESSRFADEPEMVPIPVYGNGDV 707
Query: 537 YSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGL 596
YS+ D+ + + + + MIARGALIKPW+FTEIKE+R WDI+S ERL++M+ FA +GL
Sbjct: 708 YSWQDYYE-RIERTHVDGEMIARGALIKPWLFTEIKERRDWDISSRERLDMMRKFAEYGL 766
Query: 597 EHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASD 656
HWGSD GV TTR F+ E +S+T RY+P GLL+ +P RLN RPP + GRD+LETL+AS
Sbjct: 767 THWGSDTHGVNTTRRFMCEMMSFTHRYVPTGLLEFLPSRLNDRPPLFRGRDELETLLASS 826
Query: 657 SAADWIRISEMLLGKVPDGFTFAPKHKSNAY 687
+A DW++++EM LGK P ++F PKHKS++Y
Sbjct: 827 NAQDWVKLTEMFLGKPPQEWSFTPKHKSSSY 857
>sp|A8PTG4|DUS3_MALGO tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Malassezia globosa
(strain ATCC MYA-4612 / CBS 7966) GN=DUS3 PE=3 SV=1
Length = 766
Score = 383 bits (983), Expect = e-105, Method: Compositional matrix adjust.
Identities = 223/579 (38%), Positives = 314/579 (54%), Gaps = 63/579 (10%)
Query: 143 CPFLSSEGPCPYGLACRFSGTHRDVVDVAGSTNTLRKSSEVNGL--------NKDVQKLL 194
CP+ G CP G CRF G H V ++ S L +E G+ + +K
Sbjct: 217 CPYFQERGTCPMGWKCRFLGAH--VRRLSASCRVL--GAEAQGMLGTGLELVEDEAKKHA 272
Query: 195 WKNKMKFPKADAKLKSLGLLGPAKSKMKVMEDKEQEGVVDSNNSHATNGNGCMKGTGDSV 254
W ++ + + +A+ +S + A + + ++ A ++ D +
Sbjct: 273 WLHRSPYMRNEAQPESDQVNWLASDVARRLRSRKY------TFDKAPAITSALRKEVDML 326
Query: 255 DESECSPCVPEE--NNIVNDRPLKKAKSENVENCCSVEGDNGVSVLEEDTRNNTADTQPA 312
S P E + V PL+ N E+ V + ED N + A
Sbjct: 327 -----SAMTPAEAASTEVGKGPLRV----NYEHERLVADPSATLEACEDALRNGGNDDAA 377
Query: 313 AKIDDILPETDGSLKTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMA 372
A + P EK+ + ++ LYLAPLTT GNLPFRR+C G+D+ CGEM
Sbjct: 378 ADTARVRPC----------EKRRLQWKGDLYLAPLTTTGNLPFRRLCASFGSDIHCGEMG 427
Query: 373 MCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCT--VDFIDINMG 430
M + LQG ASEW+L+RR E +FG Q+CGA P+ L T E++ ++ +DF+D+N G
Sbjct: 428 MAESFLQGHASEWSLVRRWEGERIFGTQVCGAKPELLVPTAEVLAREVGRGLDFVDVNCG 487
Query: 431 CPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDK-PITIKVRTGYFEGKNRIDSLIADI 489
CPID+V NKGAGS LL ++ I+ S + + P+TIK+RTG K + A
Sbjct: 488 CPIDLVYNKGAGSALLDHANKLGRIVRGMSEALGEIPLTIKLRTGT-TSKPTTHKIFARA 546
Query: 490 GT-WGASAVTVHGRTRQQRYSKLADWDYIYQCARKASDDLQ------------------V 530
T WG +++HGR+R+QRY ADW YI C D ++ V
Sbjct: 547 QTEWGVGGLSLHGRSRKQRYKNDADWAYIRTCVDTLHDAVRTWNEEPQHADEPDMVPVPV 606
Query: 531 LGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKD 590
GNGD+Y + D+ H + MIARGALIKPWIFTEIKE+R WDI+S ERL++++
Sbjct: 607 YGNGDVYGWRDYYDHLEHA-HVDGTMIARGALIKPWIFTEIKERRDWDISSRERLDMIRQ 665
Query: 591 FARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLE 650
+A +GL HWGSD +GV TTR FL E LS+T RY+P+GLLD IP R+N RPP + GRD LE
Sbjct: 666 YASYGLTHWGSDTQGVNTTRRFLCEMLSFTHRYVPLGLLDHIPVRMNDRPPPFHGRDPLE 725
Query: 651 TLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAYDR 689
+L++S SA DW+RIS+M LG P + F PKH+SNAY++
Sbjct: 726 SLLSSPSAHDWVRISDMFLGPAPPDWHFTPKHRSNAYEQ 764
Score = 37.4 bits (85), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 51/133 (38%), Gaps = 36/133 (27%)
Query: 42 AIAPVKKQFLRPP-PTRANQNDTVKYTNERS--------------------------SQQ 74
IAP+K QFLR P R+ D T S +
Sbjct: 7 GIAPIKAQFLRTAWPARSEALDGSTETGADSEPTAFVPDDEPDGKPEQENPTDAAAPTTS 66
Query: 75 HSSTLVKEKKSKRQLKRERQQEK-------KSASHLCPEVAKSGDVSSCPYKDKCRFSHD 127
+ ++ + + KR R Q K + LC ++A D +C + D C+F+HD
Sbjct: 67 SGANRAQDGEQDKPRKRARGQNKGRTFTRTEDNIALCTQIATGRD--ACKFGDSCKFTHD 124
Query: 128 LDGFKAQKPDDLE 140
L + QKP D+E
Sbjct: 125 LCTYLEQKPRDIE 137
>sp|Q9UTH9|DUS3_SCHPO tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=dus3 PE=3 SV=1
Length = 617
Score = 382 bits (980), Expect = e-105, Method: Compositional matrix adjust.
Identities = 240/658 (36%), Positives = 345/658 (52%), Gaps = 102/658 (15%)
Query: 79 LVKEKKSKRQLKRERQQEK-------KSASHLCPEVAKSGDVSSCPYKDKCRFSHDLDGF 131
LVK+ +K++ ++ER Q K K + LCP ++ + CPYK+ C+F HD++ +
Sbjct: 16 LVKQDGNKKRKRKERGQNKRREKIHVKENNALCPAISIGNE---CPYKENCKFPHDVEAY 72
Query: 132 KAQKPDDLEGECPFLSSEGPCPYGLACRFSGTHRDVVDVAGSTNTLRKSS------EVNG 185
A K D+ +CP G CP G CR+ H V++ G ++K VN
Sbjct: 73 LATKAPDIGDKCPIFERYGVCPAGFKCRWLAGHV-VINADGKYELIKKPDGQFTLFTVNT 131
Query: 186 LNKDVQKLLWKNKMKFPKADAKLKSLGLLGPAKSKMKVMEDKEQEGVVDSNNSHATNGNG 245
+ K+VQ+ L ++ KA++ + ++ LG K
Sbjct: 132 VGKEVQRKLRTKQLDLSKAESIISAV--LGEEKP-------------------------- 163
Query: 246 CMKGTGDSVDESECSPCVPEENNIVNDRPLKKAKSENVENCCSVEGDNGVSVLEEDTRNN 305
D S +PEEN R A SE E + GV +N
Sbjct: 164 ---------DPSSKVSNIPEEN-----RDATSAISEGKETESVSLEETGV------LKNQ 203
Query: 306 TADTQPAAKIDDILPETDGSLKT-HSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGA 364
T K ++ +L T +EK LID+R++ LAPLTTVGN PFRR+C LGA
Sbjct: 204 TVSVNVDLKEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTTVGNPPFRRLCGSLGA 263
Query: 365 DVTCGEMAMCTNLLQGQASEWALLR---------RHSSEDLFGVQICGAYPDTLARTVEL 415
D EMAMC L+QG EWAL+R R + GVQ+ +T ++
Sbjct: 264 DTFYSEMAMCYPLMQGHQPEWALVRGLNYEREMMRGGRRGILGVQLATGKLWQATKTAQV 323
Query: 416 IDQQCT-VDFIDINMGCPIDIVVNKGAGSCLLTKPMRM----KGIIEATSGTVDKPITIK 470
I +QC VDF+D+N GCPID+V +GAGS LL P R+ +G+ +A SG + P+T+K
Sbjct: 324 IAEQCDGVDFLDLNCGCPIDLVFRQGAGSSLLENPGRLLRNLQGM-DAVSGQI--PVTVK 380
Query: 471 VRTGYFEGKNRIDSLIADI-GTWGASAVTVHGRTRQQRYSKLADWDYIYQCARKA----- 524
+R G + + +LI I SA T+HGR+RQQRYSK A+WDYI + A K
Sbjct: 381 LRMGNKDDHPVVKNLIGRIFNETNTSAATLHGRSRQQRYSKNANWDYIGEIASKVKSMNE 440
Query: 525 -----------SDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKE 573
+ L ++GNGD YS+ DW + + + MIARGAL+KPWIF EI+
Sbjct: 441 RIDELPEDSLRTQPLSLIGNGDCYSWQDW--YDGVNKGVDTVMIARGALVKPWIFEEIEA 498
Query: 574 QRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDVIP 633
++ D +S +RL +++ + GLE+WGSD +GV TTR F LE++S+ RY P+ L +V
Sbjct: 499 RQFIDKSSTQRLEMLEQYCNNGLEYWGSDSQGVNTTRRFFLEFMSFFHRYTPIALYEVQR 558
Query: 634 QRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAYDRAE 691
RLN RPP Y+ RD++ETL+AS+ DW+++SE LG P+ FTF PKHKSN+ + AE
Sbjct: 559 PRLNDRPPLYTARDEMETLLASNKVTDWVKLSEFFLGPTPERFTFTPKHKSNSVEEAE 616
>sp|Q6FJ14|DUS3_CANGA tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=DUS3 PE=3 SV=1
Length = 640
Score = 379 bits (973), Expect = e-104, Method: Compositional matrix adjust.
Identities = 226/634 (35%), Positives = 333/634 (52%), Gaps = 95/634 (14%)
Query: 91 RERQQEKKSASHLCPEVA---KSGDVSSCPYKDKCRFSHDLDGFKAQK----PDDLEGEC 143
R+ +Q+K++ + LCP+ + V C + D CRF HD+ + K D + C
Sbjct: 64 RDNRQQKETHA-LCPKYVLADVTNQVDLCTFGDNCRFVHDIPTYLEHKRPEITDSVFKTC 122
Query: 144 PFLSSEGPCPYGLACRFSGTHRD--VVDVAGS--TNTLRKSSEVNGLNKDVQKLLWKNKM 199
P + G CP G CRF +H D + G ++ S E+N + +D + L K +
Sbjct: 123 PVFETLGYCPMGFKCRFLSSHMDKETHKLLGEYPSDLASASHEINHITQDQKYDLIKKRF 182
Query: 200 KFPKADAKLKSLGLLGPAKSKMKVMEDKEQEGVVDSNNSHATNGNGCMKGTGDSVDESEC 259
F K++ L+ L +M +K +E D+ + ++ E
Sbjct: 183 PFSKSELVLEILDSFQEENREMHREAEKVKEDQQDNED-----------------EQKEK 225
Query: 260 SPCVPEENNIVNDRPLKKAKSENVENCCSVEGDNGVSVLEEDTRNNTADTQPAAKIDDIL 319
+P V + R L+ K + + + +DTR + +P
Sbjct: 226 APQVVQ-------RELEAQKRRQRQ--------KDLYLQYKDTRFFAQEKKP-------- 262
Query: 320 PETDGSLKTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQ 379
+D R K ++PLTTVGNLP+RR+ + LGADVT EMA+ L+Q
Sbjct: 263 ----------------LDLRHKKIVSPLTTVGNLPYRRLMRTLGADVTYSEMALAVPLVQ 306
Query: 380 GQASEWALLRRHSSE-DLFGVQICGAYPDTLARTVELIDQQCT--VDFIDINMGCPIDIV 436
G SEWAL + H SE FGVQ+ + ++ E + + I++N GCPID++
Sbjct: 307 GTNSEWALPKAHESEYPGFGVQVACSKGWQASKAAEALATYIPNGISEINLNSGCPIDLL 366
Query: 437 VNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNRIDSLIAD-IGTWGA 494
+G+GS LL P RM + A + D PIT+K+RTG EG D+L+ +
Sbjct: 367 YRQGSGSALLDNPARMIRCLNAMNYVSGDIPITVKIRTGTKEGHPIADTLVRRLVFETDV 426
Query: 495 SAVTVHGRTRQQRYSKLADWDYIYQCA---RKASDDL------------------QVLGN 533
+A+T+HGR+RQQRY+K+ADWDY+ Q A R+A D Q +GN
Sbjct: 427 AAITLHGRSRQQRYTKVADWDYVSQVAKALRQAEADFMESPQGKESHHDEKTRHTQFVGN 486
Query: 534 GDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFAR 593
GDI++Y DW +H D PE+ SCM+ARGALIKPWIF EI Q+H D TS ERL I+K +++
Sbjct: 487 GDIFNYTDWYQHLED-PEVDSCMVARGALIKPWIFEEINAQQHLDKTSSERLEILKTYSK 545
Query: 594 FGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLM 653
F ++HWG+D+ G+ R F E++S+ RYIPVG+L+ +P +LN RPP + GRDD+ETL+
Sbjct: 546 FAMDHWGTDEYGIALGRRFFCEFMSFFHRYIPVGILERVPVQLNERPPLWKGRDDMETLL 605
Query: 654 ASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAY 687
S DWI++SEM G D F F PKHKS++Y
Sbjct: 606 GSSDVKDWIKLSEMFFGPTEDSFVFTPKHKSSSY 639
>sp|Q06053|DUS3_YEAST tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DUS3 PE=1
SV=2
Length = 668
Score = 370 bits (950), Expect = e-101, Method: Compositional matrix adjust.
Identities = 231/686 (33%), Positives = 355/686 (51%), Gaps = 86/686 (12%)
Query: 40 AKAIAPVKKQFLRPPPTRANQNDTV--------KYTNERSSQQHSSTLVKEKKSKRQLKR 91
+K IA +K +++ P NQ + + TNE + + K + Q K
Sbjct: 26 SKGIAHIKPEYIVPLKQNENQKVAIYDEEMSSDRMTNEFAGGTNKKNKNGRGKKRGQNKN 85
Query: 92 ERQQEKKSASHLCPEVAKSGDVSSCPYKDKCRFSHDLDGFKAQKPDDLEGE----CPFLS 147
++ K + LCP + GD+S C + D CRF HD++ + + K ++E CP +
Sbjct: 86 RDNRQVKEQNVLCPRLIH-GDISKCSFGDNCRFVHDINLYLSTKKPEVESNIFPSCPVFN 144
Query: 148 SEGPCPYGLACRFSGTHRDVVDVAGSTNTLRKSSEVNGLNKDVQKLLW--KNKMKFPKAD 205
S G CP G CRF +H + D N L E++ D Q + W K ++ +
Sbjct: 145 SLGFCPMGFKCRFLSSHLNKED-----NILISKKEID---PDAQTI-WSVKGEVNHISPE 195
Query: 206 AKLKSLGLLGPAKSKMKVMEDKEQEGVVDSNNSHATNGNGCMKGTGDSVDESECSPCV-P 264
KL + P +++E ++DS + EC + P
Sbjct: 196 RKLDLIKRRFPFTKSNEILE------IIDSF-------------------QQECRDSMKP 230
Query: 265 EENNIVNDRPLKKAKSENVENCCSVEGDNGVSVLEEDTRNNTADTQPAAKIDDILPETDG 324
EE V P K + +VE + + + RN + + L D
Sbjct: 231 EEE--VESTPQLKKQDPDVEQPVAPQVEQ---------RNKELSEHRMKQREVYLKYKD- 278
Query: 325 SLKTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASE 384
+ ++EKK +D K ++PLTTVGNLP+RR+ + LGADVT EMA+ L+QG SE
Sbjct: 279 -TRYFAQEKKPLDLYHKKIVSPLTTVGNLPYRRLMRKLGADVTYSEMALAVPLIQGTNSE 337
Query: 385 WALLRRHSSE-DLFGVQI-CGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAG 442
WAL + H+SE FGVQ+ C L + + I++N GCPID++ +G+G
Sbjct: 338 WALPKAHTSEFPGFGVQVACSKAWQAAKAAEALANSVSEISEINLNSGCPIDLLYRQGSG 397
Query: 443 SCLLTKPMRMKGIIEATSG-TVDKPITIKVRTGYFEGKNRIDSLIAD-IGTWGASAVTVH 500
S LL P RM + A + + D PIT+K+RTG EG + L+ + +A+T+H
Sbjct: 398 SALLDNPARMIRCLNAMNYVSKDIPITVKIRTGTKEGHPIAEGLVKRLVNETDVAAITLH 457
Query: 501 GRTRQQRYSKLADWDYIYQCA-------------------RKASDDLQVLGNGDIYSYLD 541
GR+RQQRY+K ADWDY+ Q A R + + +Q +GNGD+ ++ D
Sbjct: 458 GRSRQQRYTKSADWDYVSQVADTLRSAEADFIETEQGKEGRDSKNRIQFVGNGDVNNFED 517
Query: 542 WNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGS 601
W ++ + + S M+ARGALIKPWIF E++ Q++ D TS ERL+I++D+A+F +EHWG+
Sbjct: 518 WYRYLNGNENIDSVMVARGALIKPWIFEEVESQQYLDKTSTERLDILRDYAQFSMEHWGT 577
Query: 602 DKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADW 661
D+ G+ R F E++S+ RY+P+G+ + P +LN RPP + GRD+LETLM S DW
Sbjct: 578 DEYGISQCRRFFCEFMSFFHRYVPMGICERYPVKLNERPPNWCGRDELETLMGSTDVNDW 637
Query: 662 IRISEMLLGKVPDGFTFAPKHKSNAY 687
I++S++ GK + F F PKHKS++Y
Sbjct: 638 IKLSDLFFGKTDENFVFVPKHKSSSY 663
>sp|A7A1S5|DUS3_YEAS7 tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Saccharomyces
cerevisiae (strain YJM789) GN=DUS3 PE=3 SV=1
Length = 668
Score = 370 bits (950), Expect = e-101, Method: Compositional matrix adjust.
Identities = 231/686 (33%), Positives = 355/686 (51%), Gaps = 86/686 (12%)
Query: 40 AKAIAPVKKQFLRPPPTRANQNDTV--------KYTNERSSQQHSSTLVKEKKSKRQLKR 91
+K IA +K +++ P NQ + + TNE + + K + Q K
Sbjct: 26 SKGIAHIKPEYIVPLKQNENQKVAIYDEEMSSDRMTNEFAGGTNKKNKNGRGKKRGQNKN 85
Query: 92 ERQQEKKSASHLCPEVAKSGDVSSCPYKDKCRFSHDLDGFKAQKPDDLEGE----CPFLS 147
++ K + LCP + GD+S C + D CRF HD++ + + K ++E CP +
Sbjct: 86 RDNRQVKEQNVLCPRLIH-GDISKCSFGDNCRFVHDINLYLSTKKPEVESNIFPSCPVFN 144
Query: 148 SEGPCPYGLACRFSGTHRDVVDVAGSTNTLRKSSEVNGLNKDVQKLLW--KNKMKFPKAD 205
S G CP G CRF +H + D N L E++ D Q + W K ++ +
Sbjct: 145 SLGFCPMGFKCRFLSSHLNKED-----NILISKKEID---PDAQTI-WSVKGEVNHISPE 195
Query: 206 AKLKSLGLLGPAKSKMKVMEDKEQEGVVDSNNSHATNGNGCMKGTGDSVDESECSPCV-P 264
KL + P +++E ++DS + EC + P
Sbjct: 196 RKLDLIKRRFPFTKSNEILE------IIDSF-------------------QQECRDSMKP 230
Query: 265 EENNIVNDRPLKKAKSENVENCCSVEGDNGVSVLEEDTRNNTADTQPAAKIDDILPETDG 324
EE V P K + +VE + + + RN + + L D
Sbjct: 231 EEE--VESTPQLKKQDPDVEQPVAPQVEQ---------RNKELSEHRMKQREVYLKYKD- 278
Query: 325 SLKTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASE 384
+ ++EKK +D K ++PLTTVGNLP+RR+ + LGADVT EMA+ L+QG SE
Sbjct: 279 -TRYFAQEKKPLDLYHKKIVSPLTTVGNLPYRRLMRKLGADVTYSEMALAVPLIQGTNSE 337
Query: 385 WALLRRHSSE-DLFGVQI-CGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAG 442
WAL + H+SE FGVQ+ C L + + I++N GCPID++ +G+G
Sbjct: 338 WALPKAHTSEFPGFGVQVACSKAWQAAKAAEALANSVSEISEINLNSGCPIDLLYRQGSG 397
Query: 443 SCLLTKPMRMKGIIEATSG-TVDKPITIKVRTGYFEGKNRIDSLIAD-IGTWGASAVTVH 500
S LL P RM + A + + D PIT+K+RTG EG + L+ + +A+T+H
Sbjct: 398 SALLDNPARMIRCLNAMNYVSKDIPITVKIRTGTKEGHPIAEGLVKRLVNETDVAAITLH 457
Query: 501 GRTRQQRYSKLADWDYIYQCA-------------------RKASDDLQVLGNGDIYSYLD 541
GR+RQQRY+K ADWDY+ Q A R + + +Q +GNGD+ ++ D
Sbjct: 458 GRSRQQRYTKSADWDYVSQVADTLRSAEADFIETEQGKEGRDSKNRIQFVGNGDVNNFED 517
Query: 542 WNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGS 601
W ++ + + S M+ARGALIKPWIF E++ Q++ D TS ERL+I++D+A+F +EHWG+
Sbjct: 518 WYRYLNGNENIDSVMVARGALIKPWIFEEVESQQYLDKTSTERLDILRDYAQFSMEHWGT 577
Query: 602 DKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADW 661
D+ G+ R F E++S+ RY+P+G+ + P +LN RPP + GRD+LETLM S DW
Sbjct: 578 DEYGISQCRRFFCEFMSFFHRYVPMGICERYPVKLNERPPNWCGRDELETLMGSTDVNDW 637
Query: 662 IRISEMLLGKVPDGFTFAPKHKSNAY 687
I++S++ GK + F F PKHKS++Y
Sbjct: 638 IKLSDLFFGKTDENFVFVPKHKSSSY 663
>sp|A7TQ73|DUS3_VANPO tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294) GN=DUS3 PE=3
SV=1
Length = 664
Score = 369 bits (948), Expect = e-101, Method: Compositional matrix adjust.
Identities = 241/707 (34%), Positives = 361/707 (51%), Gaps = 121/707 (17%)
Query: 39 VAKAIAPVKKQFLRPPPTRANQNDTVK--YTNERSSQQHSSTLVKEKKSKRQLKRERQQE 96
+K IA +K +F+ ++N N + Y +E + K S++ K++R Q
Sbjct: 24 FSKGIAHIKAEFI----AKSNDNSQFQQAYNDEEIADADRIGAEGGKNSRKHKKKQRGQN 79
Query: 97 K-------KSASHLCPEVAK--SGDVSS-CPYKDKCRFSHDLDGFKAQKPDDLEGE---- 142
K K LCP+ + S D S C + DKCRF HD+ + + K ++E +
Sbjct: 80 KSRDNRQVKEEKVLCPKYIQGYSEDGESLCQFGDKCRFVHDIKEYLSHKKPEIELDQFKI 139
Query: 143 CPFLSSEGPCPYGLACRFSGTHRDVVD---VAGSTNTLRKS-----SEVNGLNKDVQKLL 194
CP + G CP G CRF +H D + V T+ R+ EVN + + + L
Sbjct: 140 CPVFDALGFCPMGFKCRFMSSHFDKENFKLVKRGTDEERQKLWSLDHEVNRITSEEKLSL 199
Query: 195 WKNKMKFPKADAKLKSLG--------LLGPAKSKMKVMEDKEQEGVVDSNNSHATNGNGC 246
K + F K++ L + + P SK + EDK + DSN
Sbjct: 200 IKRRFPFTKSNEVLDIIDSIQQEFRDITAPKVSKEEASEDKPK----DSN---------- 245
Query: 247 MKGTGDSVDESECSPCVPEENNIVNDRPLKKAKSENVENCCSVEGDNGVSVLEEDTRNNT 306
E+E +P V + + LKK + E + + +DTR
Sbjct: 246 ---------EAEVAPQV-----LQREEELKKKREHQRE----------LYLKYKDTR--- 278
Query: 307 ADTQPAAKIDDILPETDGSLKTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADV 366
++EKK +D R K ++PLTTVGNLP+RR+ + LGADV
Sbjct: 279 ---------------------YFAQEKKDLDLRRKKIVSPLTTVGNLPYRRLMRKLGADV 317
Query: 367 TCGEMAMCTNLLQGQASEWALLRRHSSE-DLFGVQI-CGAYPDTLARTVELIDQQCTVDF 424
T EMA+ L+QG SEWAL + HS+E FGVQI C L ++
Sbjct: 318 TYSEMALAVPLIQGTNSEWALPKAHSTEIPGFGVQIACSKAWQAAKAAEALAKFTPDINE 377
Query: 425 IDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDK-PITIKVRTGYFEGKNRID 483
I++N GCPID++ +G+GS LL P RM + A + D PIT+K+RTG + D
Sbjct: 378 INLNSGCPIDLLYRQGSGSALLDNPARMIRCLNAMNYVSDSIPITVKIRTGTRDSHPVAD 437
Query: 484 SLIAD-IGTWGASAVTVHGRTRQQRYSKLADWDYIYQCA-------------------RK 523
+L+ + +A+T+HGR+RQQRY+++ADWDY+ A R+
Sbjct: 438 TLVKRLVYETDVAAITLHGRSRQQRYTRVADWDYVSTVAKSLRESEASFLESAEGKESRE 497
Query: 524 ASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGE 583
+ +Q +GNGD+ ++ DW++ ++ + S M+ARGALIKPW+F E+ Q+H D +S E
Sbjct: 498 SKRRIQFVGNGDVNNFEDWHRILNNDENIDSIMVARGALIKPWVFEEVDAQQHLDKSSTE 557
Query: 584 RLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAY 643
RL I++D+A+F +EHWG+D+ G+ R F E++S+ RYIP+G+ + P +LN RPP +
Sbjct: 558 RLEILRDYAQFSMEHWGTDEYGIAQCRRFFCEFMSFFHRYIPIGICERYPVQLNERPPNW 617
Query: 644 SGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAYDRA 690
GRDDLETLM S A DWI++SEM GKV + F F PKHKS+++ A
Sbjct: 618 VGRDDLETLMGSTDARDWIKLSEMFFGKVEESFVFTPKHKSSSFPSA 664
>sp|Q6CWM0|DUS3_KLULA tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=DUS3 PE=3 SV=1
Length = 665
Score = 347 bits (890), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 224/691 (32%), Positives = 344/691 (49%), Gaps = 97/691 (14%)
Query: 39 VAKAIAPVKKQFL-------RPPPTRANQNDTVKYTNERSSQQHSSTLVKEKKS----KR 87
+K IA +K +F+ P ND + T+ R Q ++ + +K++ +
Sbjct: 27 TSKGIAHLKPEFILFNDQNGSSRPMAGEYNDEEESTSSRLESQPANQIKGKKQNSKKKRG 86
Query: 88 QLKRERQQEKKSASHLCPEVAKSGDVSSCPYKDKCRFSHDLDGFKAQKPDDLEGE----C 143
Q K ++ + LC + + D ++C + KCR+ HD+ + ++K +++ E C
Sbjct: 87 QNKNRDNRQVREQHALCSKFVTNVD-ATCSFDTKCRYVHDVREYLSKKAPEIKTEFFPIC 145
Query: 144 PFLSSEGPCPYGLACRFSGTH--------RDVVDVAGSTNTLRKSSEVNGLNKDVQKLLW 195
P S G CP G C F +H +D+ +V + E+N ++ + + L
Sbjct: 146 PVWQSLGHCPMGYKCCFLSSHCNMETLELKDLYEVDERKKLYEANHEINHIDGERKYDLI 205
Query: 196 KNKMKFPKADAKLKSLGLLGPAKSKMKVMEDKEQEGVVDSNNSHATNGNGCMKGTGDSVD 255
K + F K+D L+ +++ +QE N S + D+ D
Sbjct: 206 KRRFSFTKSDYILE-------------IIDAMQQENRDLMNTSKGSETTTDANAGEDAND 252
Query: 256 ESECSPCVPEENNIVNDRPLKKAKSENVENCCSVEGDNGVSVLEEDTRNNTADTQPAAKI 315
E ++N + R E + + DTR
Sbjct: 253 EKVSFQATEKQNQLTEKR----------------ERQRELYLKYHDTR------------ 284
Query: 316 DDILPETDGSLKTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCT 375
++EK+ +D K ++PLTTVGNLP+RR+ + LGADVT EMA+
Sbjct: 285 ------------FFAQEKRKLDLHHKKIVSPLTTVGNLPYRRLMRKLGADVTYSEMALAV 332
Query: 376 NLLQGQASEWALLRRHSSE-DLFGVQI-CGAYPDTLARTVELIDQQCTVDFIDINMGCPI 433
L+QG SEWAL + H SE FGVQI C L V I++N GCPI
Sbjct: 333 PLIQGTNSEWALPKAHCSEFPGFGVQIACSKTWQAAKAAEALAANVTGVSEINLNSGCPI 392
Query: 434 DIVVNKGAGSCLLTKPMRMKGIIEATSGTV-DKPITIKVRTGYFEGKNRIDSLIAD-IGT 491
D++ +G+GS LL P RM + + D P+T+K+RTG EG S+ +
Sbjct: 393 DLLYRQGSGSALLDNPARMIRCLNGMNYVSNDIPVTVKIRTGTREGHPIALSITKRLVLE 452
Query: 492 WGASAVTVHGRTRQQRYSKLADWDYI---------YQCARKASDDL------QVLGNGDI 536
+A+T+HGRTRQQRY+K ADWDY+ Y+ R+ + +L Q +GNGD
Sbjct: 453 TDVAAITLHGRTRQQRYTKSADWDYVGEVANAVRTYEAERQENKNLRDGQKIQFVGNGDC 512
Query: 537 YSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGL 596
++ DW KH + + S M+ARGALIKPWIF E+ Q++ D +S ERL I+KD+ +F +
Sbjct: 513 NNWEDWYKHLEN-KNMDSVMVARGALIKPWIFEEVDAQQYMDKSSKERLEILKDYCKFAM 571
Query: 597 EHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASD 656
+HWG+D+ G+ R F E++S+ RY+P+G+ + P LN RPP + GRDDLETL+ S
Sbjct: 572 DHWGTDQYGISQCRRFFCEFMSFFHRYVPMGICERYPVLLNERPPNWKGRDDLETLLGST 631
Query: 657 SAADWIRISEMLLGKVPDGFTFAPKHKSNAY 687
+ DW+++SEM GKV D F F PKHKSN++
Sbjct: 632 DSNDWLKLSEMFFGKVNDEFVFTPKHKSNSF 662
>sp|Q5ALL3|DUS3_CANAL tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Candida albicans
(strain SC5314 / ATCC MYA-2876) GN=DUS3 PE=3 SV=1
Length = 613
Score = 344 bits (883), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 180/378 (47%), Positives = 250/378 (66%), Gaps = 24/378 (6%)
Query: 332 EKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRH 391
EKK + R ++PLTTVGNLP+RR+ K LGADVT EMA+ L+QG EWAL + H
Sbjct: 237 EKKKLHLRNAKIVSPLTTVGNLPYRRLMKTLGADVTYSEMALSVPLIQGHNPEWALPKAH 296
Query: 392 SSE-DLFGVQICGAYPDTLARTVELIDQQCT-VDFIDINMGCPIDIVVNKGAGSCLLTKP 449
SE FGVQI + A+ E I + T V +++N GCPID++ +G GS LL +P
Sbjct: 297 VSEYPGFGVQIASSKHWAAAKAAEAIYRNTTHVSELNLNCGCPIDLLYKQGQGSALLDQP 356
Query: 450 ---MRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWG-ASAVTVHGRTRQ 505
+R+ + A+SG D P+T+K+RTG EGKN +L++ + G A+A+T+HGR+RQ
Sbjct: 357 SKLLRILSGMNASSG--DIPVTVKIRTGIKEGKNTAVNLVSRVLEEGNAAAITLHGRSRQ 414
Query: 506 QRYSKLADWDYIYQCAR---------------KASDDLQVLGNGDIYSYLDWNKHKSDCP 550
QRYSK ADW+YI + + D + +GNGD+YS+ DW +H +
Sbjct: 415 QRYSKEADWNYIAEVGTVVKNWNEQQKEDKEGRDRDPVYFVGNGDVYSHEDWYEH-VNTD 473
Query: 551 ELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTR 610
+ S M+ARGALIKPWIF E++ Q++ D +S ERL+I+ FA++ +EHWGSD+ GV +R
Sbjct: 474 GIDSVMVARGALIKPWIFEEVEAQQYLDKSSSERLDILGKFAKYAIEHWGSDEYGVGLSR 533
Query: 611 HFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLG 670
F+ E+LS+T RYIPVG+++ +P +LN RPP + GR+DLETL+AS DWI+I+EM LG
Sbjct: 534 RFMCEFLSFTHRYIPVGIMERLPPKLNERPPKWVGRNDLETLLASTDYKDWIKITEMFLG 593
Query: 671 KVPDGFTFAPKHKSNAYD 688
K D F F PKHKSNAY+
Sbjct: 594 KATDDFQFTPKHKSNAYE 611
Score = 72.8 bits (177), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 86/187 (45%), Gaps = 24/187 (12%)
Query: 40 AKAIAPVKKQFLRPPPTRANQNDTVKYTNERSS---QQHSSTLVKEKKSKRQLKRERQQE 96
K +A +K ++L P + V+Y ++ + ++ S +KK K Q + ++
Sbjct: 27 VKGVAAIKAEYLVPTSSLT----VVEYDDDEAEGGDREGESKPRNKKKQKGQNHKRDLKQ 82
Query: 97 KKSASHLCPEVAKSGDVSSCPY-KDKCRFSHDLDGFKAQKPDDLEGECPFLSSEGPCPYG 155
KK LCP + D C DKCRF HD+ + KP D++G CP + G CP G
Sbjct: 83 KKDIIKLCPSLIDPEDDRICQVGADKCRFHHDIASYLESKPQDIDGICPVFEALGYCPTG 142
Query: 156 LACRFSGTHR-----------DVVDVAGSTNTLRKSSEVNGLNKDVQKLLWKNKMKFPKA 204
+ CR+ +H D ++ A +TN EVN ++KD + + K K F +
Sbjct: 143 IKCRWLKSHYNPETSKLIKDGDKMETAKTTNY-----EVNHIDKDQKMEMQKKKYFFKIS 197
Query: 205 DAKLKSL 211
+K L
Sbjct: 198 QPVIKYL 204
>sp|A5DBS1|DUS3_PICGU tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 /
JCM 1539 / NBRC 10279 / NRRL Y-324) GN=DUS3 PE=3 SV=2
Length = 607
Score = 341 bits (874), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 184/421 (43%), Positives = 263/421 (62%), Gaps = 39/421 (9%)
Query: 289 VEGDNGVSVLEEDTRNNTADTQPAAKIDDILPETDGSLKTHSREKKLIDFREKLYLAPLT 348
V+ D ++ EE NN + + KI EKK +D R ++PLT
Sbjct: 203 VQSDENIAKREEAKENNASYVEAPFKI---------------AEKKKLDLRGAKIVSPLT 247
Query: 349 TVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSE-DLFGVQICGAYPD 407
TVGNLP+RR+ K LGADVT EMA+ LLQ SEWAL + HSSE FGVQI +
Sbjct: 248 TVGNLPYRRLMKTLGADVTYSEMALSLPLLQATNSEWALPKAHSSEYPGFGVQIATSKHW 307
Query: 408 TLARTVELIDQQCT-VDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIE---ATSGTV 463
A+ E+I ++ T V +++N GCPID++ +G GS L+ +P R+ I++ A+SG
Sbjct: 308 AAAKAAEVIYKETTHVSELNLNCGCPIDLLYRQGQGSALMEQPARLLRILKGMNASSG-- 365
Query: 464 DKPITIKVRTGYFEGKNRIDSLIADI-GTWGASAVTVHGRTRQQRYSKLADWDYIYQCA- 521
D P+T+K+RTG + KN SL+ + +A+T+HGR+RQQRY+K ADW+YI +
Sbjct: 366 DIPVTVKIRTGTKDNKNTAKSLVERVLAENDVAAITLHGRSRQQRYTKDADWEYIKEVGA 425
Query: 522 ------RKASDDLQ--------VLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWI 567
K +D + +GNGD++++ DW + + + S M+ARGALIKPWI
Sbjct: 426 VVTEWNNKKEEDKESSETNRTNFVGNGDVFTHEDW-YNAVNTEGVDSVMVARGALIKPWI 484
Query: 568 FTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVG 627
F E++ Q++ D ++ ERL+I++ FA F LEHWGSD+ GV +R F+ E+LS+T RYIPVG
Sbjct: 485 FEEVEAQQYLDKSATERLDILRKFADFSLEHWGSDEYGVGLSRRFMCEFLSFTHRYIPVG 544
Query: 628 LLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAY 687
+L+ +P ++N RPP + GR++LETL+ S DWI+I+EM GK D FTF PKHKSNAY
Sbjct: 545 ILERLPPKINQRPPQWRGRNELETLLGSTDYKDWIKITEMFYGKTGDNFTFIPKHKSNAY 604
Query: 688 D 688
+
Sbjct: 605 E 605
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 85/181 (46%), Gaps = 15/181 (8%)
Query: 41 KAIAPVKKQFLRPPPTRANQNDTVKYTNERSSQQHSSTLVKEKKSKRQLKRERQQEKKSA 100
K IAP+K +F+ P+ + V + + ++ K+KK + KR+ +Q+ +
Sbjct: 24 KGIAPIKPEFIVENPSVPADDRYVNDDDAEAGDRNGEEKGKKKKRGQNKKRDMRQQHEEV 83
Query: 101 SHLCPEVAKSGDVSSCPYK-DKCRFSHDLDGFKAQKPDDLEGECPFLSSEGPCPYGLACR 159
LC + + +C + + CR +HD+ + A K D++G CP S G CP GL CR
Sbjct: 84 -RLCSSLLDPSNPGTCRFGPEHCRSTHDVTTYLAAKAPDIDGVCPVFKSIGYCPAGLKCR 142
Query: 160 FSGTH-------RD--VVDVAGSTNTLRKSSEVNGLNKDVQKLLWKNKMKFPKADAKLKS 210
+ +H RD +D S+ EVN ++ + + L K K F +D +K
Sbjct: 143 WLNSHYEDGKLKRDQSQIDAYASSG----QGEVNKISTEAKLALQKKKYLFEVSDNVIKY 198
Query: 211 L 211
L
Sbjct: 199 L 199
>sp|A6QYC6|DUS3_AJECN tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Ajellomyces
capsulata (strain NAm1 / WU24) GN=DUS3 PE=3 SV=1
Length = 741
Score = 340 bits (871), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 240/736 (32%), Positives = 351/736 (47%), Gaps = 141/736 (19%)
Query: 41 KAIAPVKKQFL----------RPPPTRANQNDTVKYTNERSSQQHSSTLVKEKKSKRQLK 90
K +APVKK++L P + +E+ +EKK + +K
Sbjct: 64 KGVAPVKKEYLIEVSQSTGQASPRAIADDDAAEAAKHHEKDGGGAKQKGRREKKGGQNIK 123
Query: 91 RE--RQQEKKSASHLCPEVAKSGDVSS--CPYKDKCRFSHD----LDGFKAQKPDDLEGE 142
R R Q++K LC VA + S C + C+F HD L +K D G
Sbjct: 124 RTFGRSQDEK---QLCQTVAYYPEFSPNPCAFGKSCKFEHDIRKYLKNYKRADLDTFGGV 180
Query: 143 CPFLSSEGPCPYGLACRFSGTHRDVVDVAGSTNTLRKSSEVNGLNKDVQKLLWKNKMKFP 202
CP ++G CP G CRF GS R++ + K++ + ++M+ P
Sbjct: 181 CPVWEAKGRCPSGWKCRF----------VGSHMAERETEDGR---KELVLVEDASRMRHP 227
Query: 203 KADAKLKSLGLLG--PAKSKMKVMEDKEQEGVVDSNNSHATNGNGCMKGTGDSVDESECS 260
+ ++ G++ ++K+ + + + Q DS +
Sbjct: 228 TSTNGIEVDGVVNVVTTEAKLALAKKRYQTPKADSYTTWI-------------------- 267
Query: 261 PCVPEENNIVNDRPLKKAKSENVENCCSVEGDNGVSVLEEDTRNNTADTQPAAKIDDILP 320
+ V+ + N + SV G N D+++ D + LP
Sbjct: 268 -------DTVSREVERNLHGRNQDEAASVPG-NADGQGTSDSKDRKEDNRAQYTEPPFLP 319
Query: 321 ETDGSLKTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQG 380
S +++L E LAPLTT GNLPFRR+C LGA +T EMAM +L+QG
Sbjct: 320 ---------SEKRRLYFGPETPVLAPLTTQGNLPFRRLCVDLGAQLTYSEMAMSMSLVQG 370
Query: 381 QASEWALLRRHSSEDL---------------------FGVQICGAYPDTLARTVELIDQQ 419
SEWAL++ H SE L FG QI G P R E +
Sbjct: 371 SKSEWALMKAHESETLPPAVNPKQTIVKDYDNSRDLKFGAQITGNKPWVALRATEAMTAL 430
Query: 420 C-TVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIE---ATSGTVDKPITIKVRTGY 475
C + ID+N GCPID+V +G+GS LL +++ ++ A SG + PIT K+R G
Sbjct: 431 CPQLRVIDMNCGCPIDMVFREGSGSALLDHASKLEKMLRGMNAVSGEI--PITAKIRMGT 488
Query: 476 FEGKNRIDSLIADI------------GTWGASAVTVHGRTRQQRYSKLADWDYIYQCA-- 521
+ LI + G G +A+T+HGR+RQQRYS+ ADW+YI QCA
Sbjct: 489 KDSNPTATKLIERLIMGGVESHEIGRGPAGVAAITLHGRSRQQRYSRQADWEYISQCAAL 548
Query: 522 ----------------------RKASDDLQVLGNGDIYSYLDW--NKHKSDCPELASCMI 557
+ ++ + LGNGD YS+ D+ KS + + M+
Sbjct: 549 VKRLNEQTDIGTDTIKEPDARDQPSAGKVFFLGNGDCYSHEDYFNGIQKSG---VDTVMV 605
Query: 558 ARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWL 617
ARGAL+KPWIF EI++ ++ D ++ ERL +++ FAR+GLE WGSD+ GV TR FLLE+L
Sbjct: 606 ARGALVKPWIFEEIEKGQYLDKSASERLALVEKFARYGLEAWGSDEYGVGNTRRFLLEYL 665
Query: 618 SYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFT 677
S+T RYIPVG+L+ +P + RPPA+ GR++LETL+ SD+ DWI+ISEM LG F
Sbjct: 666 SFTHRYIPVGILEYLPPSIQDRPPAWKGRNELETLLGSDNYKDWIKISEMFLGPAHKDFK 725
Query: 678 FAPKHKSNAYDRAENG 693
F PKHKSN+Y+ G
Sbjct: 726 FEPKHKSNSYEIVAEG 741
>sp|A3LUK5|DUS3_PICST tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Scheffersomyces
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 /
NRRL Y-11545) GN=DUS3 PE=3 SV=1
Length = 613
Score = 338 bits (867), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 179/423 (42%), Positives = 266/423 (62%), Gaps = 36/423 (8%)
Query: 288 SVEGDNGVSVLEEDTRNNTADTQPAAKIDDILPETDGSLKTHSREKKLIDFREKLYLAPL 347
+V+ D ++ +E +NN A D K EKK +DFR ++PL
Sbjct: 206 TVQNDENIANAKEQRKNNEATY------------VDAPYKIA--EKKRLDFRNAKIVSPL 251
Query: 348 TTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSE-DLFGVQICGAYP 406
TTVGNLP+RR+ K LGAD+T EMA+ LLQ +EWAL + H +E +GVQI +
Sbjct: 252 TTVGNLPYRRLMKKLGADITYSEMALSVPLLQATNAEWALPKAHRTEYPGYGVQIATSKH 311
Query: 407 DTLARTVELIDQQCT-VDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTV-D 464
A+ E+I ++ V +++N GCPID++ +G GS LL +P R+ I++A + + D
Sbjct: 312 WAAAKVAEIISRETEHVSELNLNCGCPIDLLYRQGQGSALLEQPARLVRILKAMNASSGD 371
Query: 465 KPITIKVRTGYFEGKNRIDSLIADI-GTWGASAVTVHGRTRQQRYSKLADWDYIYQCAR- 522
P+T+K+RTG E KN +L+ + +A+T+HGR+RQQRY+K ADW+YI + +
Sbjct: 372 IPVTVKIRTGSKENKNTAKTLVERLLAENDVAAITLHGRSRQQRYTKEADWNYIAEVGQV 431
Query: 523 -----------KASDDLQ---VLGNGDIYSYLDW-NKHKSDCPELASCMIARGALIKPWI 567
K S D Q +GNGD++S++DW N +D + S M+ARGALIKPWI
Sbjct: 432 VQQWNDKKEENKDSRDTQRTCFVGNGDVFSHVDWYNAVNTDG--IDSVMVARGALIKPWI 489
Query: 568 FTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVG 627
F E++ Q++ D T+ ERL+I+K F+ + LEHWG+D+ GV R F+ E+LS+T RYIP+G
Sbjct: 490 FEEVEAQQYLDKTATERLDILKTFSDYALEHWGTDEYGVGLARRFMCEFLSFTHRYIPLG 549
Query: 628 LLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAY 687
+L+ +P ++N RPP + GR+++ETL+ S DWI+I+EM LGK D F F PKHKSN+Y
Sbjct: 550 ILERLPPKINERPPQWKGRNEMETLLGSTDYKDWIKITEMFLGKSGDDFVFTPKHKSNSY 609
Query: 688 DRA 690
+++
Sbjct: 610 EKS 612
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 66/126 (52%), Gaps = 13/126 (10%)
Query: 87 RQLKRERQQEKKSASHLCPEVAKSGDVSSCPYK-DKCRFSHDLDGFKAQKPDDLEGECPF 145
R LK++R++ + LC + ++ +C Y ++CR +H+++ + A KP D+EG CP
Sbjct: 76 RDLKQKREEIR-----LCTSLLDPDNIKTCAYGPEQCRSTHNVEEYLASKPVDIEGICPV 130
Query: 146 LSSEGPCPYGLACRFSGTH-----RDVVDVAGSTNT--LRKSSEVNGLNKDVQKLLWKNK 198
+ G CP GL CR+ +H R ++ G T + + EVN ++ + + L K +
Sbjct: 131 FRAIGYCPAGLKCRWLQSHYDKETRKLIKDLGRTEASKIELNYEVNNVSHEARGKLRKKQ 190
Query: 199 MKFPKA 204
F A
Sbjct: 191 YDFAIA 196
>sp|Q6BS64|DUS3_DEBHA tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=DUS3 PE=3 SV=1
Length = 622
Score = 335 bits (858), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 174/380 (45%), Positives = 248/380 (65%), Gaps = 24/380 (6%)
Query: 332 EKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRH 391
EKK ++ R+ ++PLTTVGNLP+RR+ K LGADVT EMA+ LLQG +EWAL + H
Sbjct: 246 EKKKLNLRDAKIVSPLTTVGNLPYRRLMKTLGADVTYSEMALSVPLLQGTNAEWALPKAH 305
Query: 392 SSE-DLFGVQICGAYPDTLARTVELIDQQCT-VDFIDINMGCPIDIVVNKGAGSCLLTKP 449
+E +GVQI + A+ E I ++ T V +++N GCPID++ +G GS L+ +P
Sbjct: 306 RTEYPGYGVQIATSKHWAAAKAAEAIYKEATHVSELNLNCGCPIDLLYRQGQGSALMEQP 365
Query: 450 MRMKGIIE---ATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWG-ASAVTVHGRTRQ 505
R+ I++ A+SG D P+T+K+RTG E KN +L+ I + +A+T+HGR+RQ
Sbjct: 366 ARLLRILKGMNASSG--DIPVTVKIRTGTKENKNTAKALVERILSENEVAAITLHGRSRQ 423
Query: 506 QRYSKLADWDYIYQCARKASD------------DLQ---VLGNGDIYSYLDWNKHKSDCP 550
QRY+K ADW Y+ A D D Q +GNGD+Y++ DW + + P
Sbjct: 424 QRYTKEADWSYVQDVANIVQDWNNKKEDNKELRDTQPTCFVGNGDVYTHEDW-YNAVNIP 482
Query: 551 ELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTR 610
+ S M+ARGALIKPWIF E++ Q++ D +S ERL ++ +A+F +EHWGSD+ GV R
Sbjct: 483 GVDSVMVARGALIKPWIFEEVEAQQYLDKSSTERLEMIGQYAKFAIEHWGSDEYGVGLAR 542
Query: 611 HFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLG 670
F+ E+L +T RYIPVG+L+ +P +LN RPP + GRD+LETL+ S DWI+I+EM LG
Sbjct: 543 RFMCEFLGFTHRYIPVGILERLPPKLNQRPPQWKGRDELETLLGSTDYKDWIKITEMFLG 602
Query: 671 KVPDGFTFAPKHKSNAYDRA 690
K F F PKHKSNAY+++
Sbjct: 603 KAGPNFQFVPKHKSNAYEKS 622
Score = 69.3 bits (168), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 107/236 (45%), Gaps = 26/236 (11%)
Query: 14 LPADSPPPQPNSTGVPVHNLTP-EELVAKAIAPVKKQFLRPPPTRANQNDTVKYTNERSS 72
+P P QP+ ++ P + AK IAP+K +F+ P + KY N+ +
Sbjct: 4 IPEKRPSEQPDEAEAKKPHIEPRHDHFAKGIAPIKAEFIVENPDVPVEE---KYINDDEA 60
Query: 73 Q-----------QHSSTLVKEKKSKRQLKRERQQEKKSASHLCPEVAKSGDVSSCPYKDK 121
+ + + + KR LK++ ++ + +S L PE K + +
Sbjct: 61 EGGDRQEEEGGKGGKNKKRRGQNKKRDLKQQHEEVRLCSSLLDPENPKECRFGA----EN 116
Query: 122 CRFSHDLDGFKAQKPDDLEGECPFLSSEGPCPYGLACRF------SGTHRDVVDVAGSTN 175
CR SH+++ + + KP+D+EG CP ++ G CP GL CR+ TH+ + D+ N
Sbjct: 117 CRNSHNVEEYISSKPEDIEGNCPVYTAIGYCPAGLKCRWLHSHYNKETHKLLKDLEQVEN 176
Query: 176 T-LRKSSEVNGLNKDVQKLLWKNKMKFPKADAKLKSLGLLGPAKSKMKVMEDKEQE 230
+ EVN + D + L K K F A + L L ++ ++ +++ +E
Sbjct: 177 AKALNNYEVNKITPDKKTSLQKKKYTFEYASQMIPYLDSLVQNEANIEKAQEQAKE 232
>sp|Q2HDP2|DUS3_CHAGB tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Chaetomium globosum
(strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 /
NRRL 1970) GN=DUS3 PE=3 SV=2
Length = 713
Score = 330 bits (847), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 185/424 (43%), Positives = 243/424 (57%), Gaps = 63/424 (14%)
Query: 330 SREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLR 389
S +++L RE LAPLTT GNLPFRR+C LGA VT EMA+ LLQG ++W L+R
Sbjct: 293 SEKRRLYFGRETPVLAPLTTQGNLPFRRLCVELGAQVTYSEMALGLPLLQGLKADWTLMR 352
Query: 390 RHSSEDL---------------------FGVQICGAYPDTLARTVELIDQQCT-VDFIDI 427
H SE + FG QI P + E + Q + +D+
Sbjct: 353 AHESEIVPPRFNPGGPIVQGYDNSKDVKFGAQIAANAPWVAVKATEALSQLLPHLRLVDL 412
Query: 428 NMGCPIDIVVNKGAGSCLL---TKPMRMKGIIEATSGTVDKPITIKVRTGYFEGKNRIDS 484
N GCP+D V G+GS LL +K RM + A SG V PIT K+R G +GK
Sbjct: 413 NCGCPVDAVFKSGSGSALLDSHSKLERMIRGMNAVSGEV--PITAKIRMGSRDGKLTAQK 470
Query: 485 LIAD-----------IGTWGASAVTVHGRTRQQRYSKLADWDYIYQCA------------ 521
L+ IG G +AVT+HGRTR QRY+K ADW YI +CA
Sbjct: 471 LVERLALGSEDLRDMIGAPGCAAVTLHGRTRLQRYTKAADWGYIAECAALIKQFNEKSND 530
Query: 522 -----RKASDD-------LQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFT 569
R+A ++ + LGNGD YS++++ H D ++ S MI RGAL+KPW+F
Sbjct: 531 LADTIREADENTLPNGGKMYFLGNGDCYSHVEYFDH-VDNAKVDSVMIGRGALVKPWVFE 589
Query: 570 EIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLL 629
EI++ ++ D +S ERL ++ F R+G+E WGSD+ G+ TR FLLE+LS+ CRY+P+GLL
Sbjct: 590 EIEKGQYLDKSSSERLTYIEKFVRYGMEAWGSDELGLNYTRRFLLEFLSFFCRYVPIGLL 649
Query: 630 DVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAYDR 689
+ +P LN RPPAY GRDDLETL AS + DWI+ISEM LG P GF F PKHKSN+Y+
Sbjct: 650 ERLPPNLNERPPAYRGRDDLETLFASKNYKDWIKISEMFLGPAPPGFKFQPKHKSNSYEI 709
Query: 690 AENG 693
G
Sbjct: 710 EAEG 713
Score = 49.7 bits (117), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 76/186 (40%), Gaps = 38/186 (20%)
Query: 21 PQPNSTGVPV--HNLTPEELVAKAI---------------APVKKQFLRPPPTRANQ--- 60
PQ GVP+ HN + E AK I AP+K ++L PP + +
Sbjct: 10 PQEEDNGVPIDGHNGSNSEPAAKKIKLDSPSSADSRAKGVAPIKAEYLLFPPGQKAKPTQ 69
Query: 61 -------NDTVKYTNERSSQQHSSTLVKEKKSKRQLKRERQQEKK-----SASHLCPEVA 108
ND + + +K KR+ +R + +E++ A LC +A
Sbjct: 70 SEAEADDNDDDAAEGRTAPTPQETQQAPQKDGKRKSQRGQNKEREFGTFSDAQRLCNTIA 129
Query: 109 KSGDVSS--CPYKDKCRFSHDLDGF--KAQKPD--DLEGECPFLSSEGPCPYGLACRFSG 162
+ + S C + D+C HDL + + ++PD G+CP G CP G C F
Sbjct: 130 WTPEFSPRPCKHGDRCNALHDLRKYLKEGRRPDITTFGGKCPVWEKYGKCPSGWRCLFVH 189
Query: 163 THRDVV 168
+H D +
Sbjct: 190 SHMDEI 195
>sp|A6RMI1|DUS3_BOTFB tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Botryotinia
fuckeliana (strain B05.10) GN=dus3 PE=3 SV=1
Length = 750
Score = 330 bits (845), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 187/421 (44%), Positives = 246/421 (58%), Gaps = 67/421 (15%)
Query: 332 EKKLIDFR-EKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRR 390
EK+ I F E LAPLTT GNLPFRR+C LGA +T EMAM LLQGQ SEWAL++
Sbjct: 328 EKRRIYFGPETPVLAPLTTQGNLPFRRLCVELGAQLTYSEMAMSIPLLQGQKSEWALMKA 387
Query: 391 HSSE---------------------DL-FGVQICGAYPDTLARTVELIDQQCT-VDFIDI 427
H SE DL FG QI + P + E++ + + ID+
Sbjct: 388 HKSEVTPPRVNSDRTSIVRKYDNSKDLKFGTQISASKPFMAIKAAEVLSRFVPHLRVIDL 447
Query: 428 NMGCPIDIVVNKGAGSCLLTKPMRMKGIIE---ATSGTVDKPITIKVRTGYFEGK----N 480
N GCPI++V +GAGS LL P +++ +I A SG V PIT K+R G GK
Sbjct: 448 NCGCPIELVYRQGAGSALLDAPSKLEKMIRGMNAVSGEV--PITAKIRMGTMTGKPTAFK 505
Query: 481 RIDSLI-------ADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCA------RKASDD 527
I+ L +G G +A+T+HGR+RQQRY+K ADW YI +CA + DD
Sbjct: 506 TIERLAFGGVESRERLGAPGCAAITLHGRSRQQRYTKSADWSYIAECAALVKSYNQKKDD 565
Query: 528 L--------------------QVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWI 567
L +GNGD YS++D+ H + + S M+ARGALIKPW+
Sbjct: 566 LTDTVMEPDARTLPNAPDGKIHFIGNGDCYSHIDYLDHIQNA-GVDSVMVARGALIKPWL 624
Query: 568 FTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVG 627
F EI++ + D ++ ERL ++ F R+GLE WGSD+ GV TR FLLEWLS+ RY+P G
Sbjct: 625 FEEIEKGQVLDKSASERLEYVEKFTRYGLEAWGSDEIGVGQTRRFLLEWLSFAHRYVPAG 684
Query: 628 LLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAY 687
+L+ +P L RPPAY GR+DLETL+ASD+ DW++ISEM LG +GF F PKHKSN+Y
Sbjct: 685 ILEHLPPSLQDRPPAYRGRNDLETLLASDNYMDWMKISEMFLGPAHEGFKFQPKHKSNSY 744
Query: 688 D 688
+
Sbjct: 745 E 745
Score = 41.2 bits (95), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 13/137 (9%)
Query: 41 KAIAPVKKQFL-RPPPTRANQNDTVKYTNERSSQQHSSTLVKEKKSKRQLKRERQQEKKS 99
+ IAPVK ++L +P +R+ +D N+ ++ ++ K++ K + Q + +
Sbjct: 85 RGIAPVKAEYLIQPAGSRSATDDRNPAENDDDAEGKPRGDERDNGGKKKKKAKGQNKDRQ 144
Query: 100 AS------HLCPEVAKSGDVS--SCPYKDKCRFSHDLDGFKAQ-KPDDL---EGECPFLS 147
LC ++ S + S C + D C+ H+L + A+ + DL +CP
Sbjct: 145 FGSWGDKIKLCNSISNSSEFSPKECSFGDSCKCEHNLRKYLAEGRRADLTTFNSKCPVWE 204
Query: 148 SEGPCPYGLACRFSGTH 164
G C G CRF G+H
Sbjct: 205 DNGTCLAGWKCRFVGSH 221
>sp|A7EKL8|DUS3_SCLS1 tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=dus3
PE=3 SV=1
Length = 750
Score = 329 bits (844), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 186/421 (44%), Positives = 244/421 (57%), Gaps = 67/421 (15%)
Query: 332 EKKLIDFR-EKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRR 390
EK+ I F E LAPLTT GNLPFRR+C LGA +T EMAM L QGQ SEWAL++
Sbjct: 328 EKRRIYFGPETPVLAPLTTQGNLPFRRLCVELGAQLTYSEMAMSIPLFQGQKSEWALMKA 387
Query: 391 HSSE---------------------DL-FGVQICGAYPDTLARTVELIDQQCT-VDFIDI 427
H SE DL FG QI P + E++ + + ID+
Sbjct: 388 HESEITPPRINPDRSSIVQNYNNSKDLKFGTQISANKPFQAIKAAEILSRFVPHLRVIDL 447
Query: 428 NMGCPIDIVVNKGAGSCLLTKPMRMKGIIE---ATSGTVDKPITIKVRTGYFEGK----N 480
N GCPI++V +GAGS LL P +++ +I A SG V PIT K+R G GK
Sbjct: 448 NCGCPIELVYRQGAGSALLDAPSKLEKMIRGMNAVSGEV--PITAKIRMGTMTGKPTALK 505
Query: 481 RIDSLI-------ADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCA------RKASDD 527
I+ L +G G +A+T+HGR+RQQRY+K ADW YI +CA + DD
Sbjct: 506 TIERLAFGGVESRERLGAPGCAAITLHGRSRQQRYTKNADWSYIAECAALVKSYNQKKDD 565
Query: 528 L--------------------QVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWI 567
L +GNGD YS++D+ H + + S M+ARGALIKPW+
Sbjct: 566 LTDTIMEPDARTLPNAPDGKLHFIGNGDCYSHVDYLDHIQNA-SVDSVMVARGALIKPWL 624
Query: 568 FTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVG 627
F EI++ + D ++ ERL ++ FAR+GLE WGSD+ GV TR FLLEWLS+ RY+P G
Sbjct: 625 FEEIEKGQTLDKSASERLQYIEKFARYGLEAWGSDEMGVGQTRRFLLEWLSFAHRYVPAG 684
Query: 628 LLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAY 687
+L+ +P L RPPAY GR+DLETL+ASD+ DW++I EM LG +GF F PKHKSN+Y
Sbjct: 685 ILEHLPPSLQDRPPAYRGRNDLETLLASDNYMDWMKICEMFLGPAHEGFKFQPKHKSNSY 744
Query: 688 D 688
+
Sbjct: 745 E 745
Score = 39.3 bits (90), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 13/137 (9%)
Query: 41 KAIAPVKKQFL-RPPPTRANQNDTVKYTNERSSQQHSSTLVKEKKSKRQLKRERQQEKKS 99
+ IAP+K ++L P +R+ + N+ ++++ ++ K++ K + Q + +
Sbjct: 85 RGIAPIKAEYLLHPAGSRSATDGRNPAANDDAAEEKPRGDNRDNGGKKKKKEKGQNKDRQ 144
Query: 100 AS------HLCPEVAKSGDVS--SCPYKDKCRFSHDLDGFKAQ-KPDDL---EGECPFLS 147
LC + S + S C + + C+ HDL + A+ K DL +CP
Sbjct: 145 FGSWGDKIKLCNSTSNSPEFSPKECSFGESCKCEHDLRKYLAEGKRGDLTTFNSKCPVWE 204
Query: 148 SEGPCPYGLACRFSGTH 164
G C G CRF G+H
Sbjct: 205 DNGTCLAGWKCRFVGSH 221
>sp|A5DTS1|DUS3_LODEL tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 /
NBRC 1676 / NRRL YB-4239) GN=DUS3 PE=3 SV=1
Length = 642
Score = 328 bits (842), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 171/381 (44%), Positives = 238/381 (62%), Gaps = 29/381 (7%)
Query: 332 EKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRH 391
EKK I+ R ++PLTTVGNLP+RR+ K LGADVT EMA+ L QG EWAL + H
Sbjct: 266 EKKKINLRGAKIVSPLTTVGNLPYRRLMKTLGADVTYSEMALAVPLSQGHRPEWALPKAH 325
Query: 392 SSE-DLFGVQICGA-YPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKP 449
+E FGVQI + + L V I++N GCPID++ +G GS LL P
Sbjct: 326 VTEYPGFGVQIASSKHWAAAKAAEALYKTTLHVSEINLNCGCPIDLLFKQGQGSALLDSP 385
Query: 450 MRMKGIIEATSGTV-DKPITIKVRTGYFEGKNRIDSLIADI-GTWGASAVTVHGRTRQQR 507
R+ I++A + + D P+TIK+RTG E KN L+ + +A+T+HGR+RQQR
Sbjct: 386 PRLIRIVKAMNASSGDIPVTIKIRTGVKENKNTAVHLVNRVLEETQVAAITLHGRSRQQR 445
Query: 508 YSKLADWDYIYQCAR----------------KASDDLQVLGNGDIYSYLDW----NKHKS 547
Y+K ADWDYI + + + ++ +GNGD+YS+ DW N+
Sbjct: 446 YTKEADWDYIEEVGKVVKTWNEKREDEDKEGRDTNPTWFVGNGDVYSHEDWYNGVNREGV 505
Query: 548 DCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVE 607
D S M+ARGALIKPWIF E++ Q++ D +S ERL +++ +A++ +EHWGSD+ GV
Sbjct: 506 D-----SVMVARGALIKPWIFEEVEAQQYLDKSSTERLAMLEKYAKYAVEHWGSDEYGVS 560
Query: 608 TTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEM 667
R F+ E+LS+T RY+PVG+L+ +P +LN RPP + GR+DLETL+ S DWI+I+EM
Sbjct: 561 NARRFMCEFLSFTHRYVPVGILERLPAKLNERPPKWIGRNDLETLLGSSDYKDWIKITEM 620
Query: 668 LLGKVPDGFTFAPKHKSNAYD 688
LGK D F F PKHKSN+Y+
Sbjct: 621 FLGKAGDDFLFIPKHKSNSYE 641
Score = 59.7 bits (143), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 10/124 (8%)
Query: 120 DKCRFSHDLDGFKAQKPDDLEGECPFLSSEGPCPYGLACRFSGTHRD------VVDVAGS 173
+ C++SH+++ + A K DD+EG CP + G CP GL CR+ +H + + D+
Sbjct: 124 ENCKYSHNIEEYLAAKSDDIEGTCPVYEALGYCPSGLKCRWLHSHYNKETKKLIKDLEKL 183
Query: 174 TNTLRKSSEVNGLNKDVQKLLWKNKMKFPKADAKLKSLGLLGPAKSKMKVMEDK-EQEGV 232
K+ EVN ++++ + L + K F D + L K K ++K EQE
Sbjct: 184 EREKSKNHEVNIIDRESKVALQRKKFNF---DISTPVINFLESRKQKDDGKQNKEEQEAS 240
Query: 233 VDSN 236
D N
Sbjct: 241 TDGN 244
>sp|Q7SG01|DUS3_NEUCR tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=dus-3 PE=3 SV=1
Length = 737
Score = 325 bits (834), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 183/421 (43%), Positives = 245/421 (58%), Gaps = 64/421 (15%)
Query: 332 EKKLIDF-REKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRR 390
EK+ I F RE LAPLTT GNLPFRR+C LGA++T EMA+ LLQGQ ++W L+R
Sbjct: 317 EKRRIYFGRETPVLAPLTTQGNLPFRRLCVELGAEITYSEMALGLPLLQGQKADWTLMRA 376
Query: 391 HSSE--------------------DL-FGVQICGAYPDTLARTVELIDQQCT-VDFIDIN 428
H SE DL FGVQI P ++ E + + + ID+N
Sbjct: 377 HESEITPPRYTPTGIVDPAYDNSKDLKFGVQITAHAPWIAIKSAETLARYLPHLRVIDLN 436
Query: 429 MGCPIDIVVNKGAGSCLLTKPMRMKGIIEA---TSGTVDKPITIKVRTGYFEGKNRIDSL 485
GCPID+V GAGS LL P +++ +I SG V P+T K+R G + L
Sbjct: 437 CGCPIDMVYKSGAGSALLDAPSKLERMIRGMNTVSGEV--PVTAKIRMGVRDNHLTAQKL 494
Query: 486 IADI-----------GTWGASAVTVHGRTRQQRYSKLADWDYIYQCA------RKASDDL 528
+ + G G +AVT+HGRTRQQRY+K ADW YI +CA + +D L
Sbjct: 495 VERLALGAPDIRAVSGAPGCAAVTLHGRTRQQRYTKAADWSYIAECAALVKSFNEKADSL 554
Query: 529 Q------------------VLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTE 570
Q +GNGD YS++D+ H D ++ S M+ RGA+IKPWIF E
Sbjct: 555 QDTIREADERSLPNGGRMYFVGNGDCYSHVDYFNH-VDNAKVDSVMVGRGAIIKPWIFEE 613
Query: 571 IKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLD 630
I ++ D ++ ERL ++ FA++G+E WGSD+ G+ TR FLLE+LS+ RY+P+GLL+
Sbjct: 614 ISAGQYLDKSATERLAYVEKFAKYGMEAWGSDELGLNYTRRFLLEFLSFFHRYVPIGLLE 673
Query: 631 VIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAYDRA 690
+P +N RPPAY GR++LETL+AS + DWI+ISEM LG P F F PKHKSNAY+
Sbjct: 674 YLPPAMNDRPPAYKGRNELETLLASKNYLDWIKISEMFLGPAPPNFKFQPKHKSNAYENI 733
Query: 691 E 691
E
Sbjct: 734 E 734
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 12/136 (8%)
Query: 41 KAIAPVKKQFLRPPPTRANQNDTV---KYTNERSSQQHSSTLVKEKKSKRQLKRERQQEK 97
+ IAP+KK++L PP++ + V R++ K+ K KR + +++E
Sbjct: 73 RGIAPIKKEYLVVPPSQVAKTAEVVDDDAAEGRTAPGAEGAAGKDGKKKRPKGQNKEREF 132
Query: 98 ---KSASHLCPEVAKSGDVS--SCPYKDKCRFSHDLDGF--KAQKPD--DLEGECPFLSS 148
A LC VA + + S C + ++C HD+ + + ++PD G+CP +
Sbjct: 133 GIFADAQRLCNSVAWTPEFSPRHCKHGERCNALHDIRKYLKEGRRPDLNVFGGKCPVWET 192
Query: 149 EGPCPYGLACRFSGTH 164
G C G C F +H
Sbjct: 193 HGKCSSGWRCLFVESH 208
>sp|Q6C4K3|DUS3_YARLI tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=DUS3 PE=3 SV=1
Length = 622
Score = 325 bits (832), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 171/383 (44%), Positives = 241/383 (62%), Gaps = 31/383 (8%)
Query: 332 EKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRH 391
EKK +D + K ++PLTTVGNLP+RR+ K LGADVT GEMA+ L+QG +EWAL R H
Sbjct: 239 EKKKLDLKGKYIVSPLTTVGNLPYRRLMKDLGADVTYGEMALTLPLIQGHKAEWALTRCH 298
Query: 392 SSE----DLFGVQICGAYPDTLARTVELIDQQCT-VDFIDINMGCPIDIVVNKGAGSCLL 446
SSE + FGVQ+ + + + + CT + I++N GCPID+V +GAGS L+
Sbjct: 299 SSEVTEGNHFGVQVTAPKHWQAIKAAQAVSELCTGISEINLNCGCPIDLVYRQGAGSALM 358
Query: 447 TKPMRMKGIIEATSGTV-DKPITIKVRTGYFE---GKNRIDSLIADIGTWGASAVTVHGR 502
+ + I+ S D PIT+K+RTG K L+A+ T +A T+HGR
Sbjct: 359 DQQGKTARIVRGMSMVSGDVPITVKMRTGTGSTPTAKKLTARLLAEGQT---AAFTLHGR 415
Query: 503 TRQQRYSKLADWDYIYQCARKA---SDDLQ---------------VLGNGDIYSYLDWNK 544
+R QRY+KLADW+YI + A DD++ V+GNGD Y++ DW++
Sbjct: 416 SRAQRYTKLADWNYIREVADSVVNTRDDVREKSELDDHVISHPTWVVGNGDCYTWSDWHR 475
Query: 545 HKSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKK 604
D + S M+ARGALIKPWIF E++ ++H D ++ ERL + FA++GLEHWGSD+
Sbjct: 476 -AVDEAHVDSVMVARGALIKPWIFEEVESRQHIDKSATERLEYFQKFAQYGLEHWGSDQY 534
Query: 605 GVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRI 664
GV TR +L E++S+T RY+P G+L+ +P ++N RP + GRD++ETL+ S DWI++
Sbjct: 535 GVNQTRRYLCEFMSFTHRYVPSGILEYLPAKMNDRPDLWKGRDEMETLLGSSDYRDWIKV 594
Query: 665 SEMLLGKVPDGFTFAPKHKSNAY 687
+E LG V D F F PKHKSNAY
Sbjct: 595 TERFLGPVGDEFEFTPKHKSNAY 617
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 63/138 (45%), Gaps = 12/138 (8%)
Query: 81 KEKKSKRQLKRERQQEKKSASHLCP---EVAKSGDVSSCPYKDKCRFSHDLDGFKAQKPD 137
+EKK Q K +++K A +C + + G C Y DKC+F HDL + KP
Sbjct: 71 EEKKKGGQNKNRSLKQRKDAIKMCSSALQFKEDGSPQECSYGDKCKFEHDLQKYLESKPK 130
Query: 138 DLEGECPFLSSEGPCPYGLACRFSGTHRDVVDVAGSTNTLRKSSEVNGLNKDVQKL---- 193
D+EG CP G CP G CR+ +HR D G + + N NK++ +
Sbjct: 131 DIEGVCPVFDLTGQCPQGYKCRWLSSHR---DSEGKLLVDEEKKKANADNKELNHVFKHL 187
Query: 194 --LWKNKMKFPKADAKLK 209
L + K K+D +K
Sbjct: 188 NPLQRKKYDLSKSDEAIK 205
>sp|Q0U9D6|DUS3_PHANO tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Phaeosphaeria
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173)
GN=DUS3 PE=3 SV=2
Length = 739
Score = 324 bits (831), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 222/650 (34%), Positives = 320/650 (49%), Gaps = 126/650 (19%)
Query: 103 LCPEVAKSGDVSS--CPYKDKCRFSHDLDGF-KAQKPDDLEGECPFLSSEGPCPYGLACR 159
LC A S + S+ C + DKC+F HDL + K + +DL + +G CP
Sbjct: 147 LCGTRALSNEFSAPECRFGDKCKFEHDLRKYLKEGRREDL------TTFDGQCP------ 194
Query: 160 FSGTHRDVVDVAGSTNTLRKSSEVNGLNKDVQKLLWKNKMKFPKADAKLKSLGLLGPAKS 219
+ +V G + L WK + ++ + G +
Sbjct: 195 -------IYEVRGYCH-----------------LGWKCRFVGSHSEERATEHG-----RQ 225
Query: 220 KMKVMEDKEQEGVVDSNNSHATNGNGCMKGTGDSVDESECSPCVPEENNI-VNDRPLKKA 278
++ + ED E++ K G DE E +P+E ++ R +
Sbjct: 226 ELVLREDAERKA----------------KFAGLEDDEVEVVNILPKEVRFGLSRRKIGTP 269
Query: 279 KSENVENCCSVEGDNGVSVLEEDTRNNTADTQPAAKIDDILPETDGSLKTHSREKKLIDF 338
+S+ + D + + NN DT+ + D EK+ + +
Sbjct: 270 RSDQYLEWINSNKDQERELFD----NNQGDTEALKEERDARRAEYVEAPFRPSEKRRLYY 325
Query: 339 R-EKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSE--- 394
E LAPLTT GN+P+RR+C LG VT EMAM L+QG+ EWAL++ H SE
Sbjct: 326 GPETPVLAPLTTQGNMPYRRLCVDLGCQVTWSEMAMGMPLIQGERGEWALMKAHESEIAA 385
Query: 395 -----------------DL-FGVQICGAYPDTLARTVELIDQQC-TVDFIDINMGCPIDI 435
D+ FG QI P +TVE++ C + ID+N GCPI++
Sbjct: 386 PRFQSKGTVVQGYDNAADIRFGAQIAANKPWLANKTVEVLTDNCPKLRAIDLNCGCPINL 445
Query: 436 VVNKGAGSCLLTKPMRMKGIIEATSGTVDK-PITIKVRTGYFEGKNRIDSLI-------- 486
V KG+GS LL +++ I+ + + PIT+KVR G + LI
Sbjct: 446 VCEKGSGSALLDSEAKLENILRGMNYVSKEVPITVKVRMGTKDNHPTAQKLIKRLVLGGY 505
Query: 487 ----ADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCAR-----KASDDLQ-------- 529
+D GT G +A+T+HGR++QQRYSK ADW YI +CA K D Q
Sbjct: 506 EALASDKGTSGVAAITLHGRSKQQRYSKSADWSYIAECASLINRLKKEKDAQTDTAAEAD 565
Query: 530 -----------VLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRHWD 578
+GNGD YS+ D+ H ++ + S MI RGALIKPWIF EI++ ++ D
Sbjct: 566 PRDQANGGHVYFVGNGDCYSHEDYYNHMNNA-NVDSVMIGRGALIKPWIFEEIEKGQYLD 624
Query: 579 ITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNW 638
++ ERL ++ FA++GL+ WGSD+ G+ TTR FLLEWLS+ RY+PVGLL+ +P +
Sbjct: 625 KSATERLAYIEKFAKYGLQTWGSDELGIGTTRRFLLEWLSFAHRYVPVGLLEHLPPNIQD 684
Query: 639 RPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAYD 688
RPP + GR+DLETLMAS+ DWI++SEM LGK P F F PKHKSNAY+
Sbjct: 685 RPPRFRGRNDLETLMASEHYLDWIKLSEMFLGKAPPTFKFEPKHKSNAYE 734
>sp|Q4WRX4|DUS3_ASPFU tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=dus3 PE=3 SV=1
Length = 726
Score = 323 bits (827), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 174/417 (41%), Positives = 243/417 (58%), Gaps = 61/417 (14%)
Query: 332 EKKLIDFR-EKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRR 390
EK+ I F E LAPLTT GNLPFRR+C G T EMAM +L+QGQ SEWAL++
Sbjct: 308 EKRRIYFGPETPTLAPLTTQGNLPFRRLCIDYGCQFTYSEMAMGMSLIQGQKSEWALMKA 367
Query: 391 HSSEDL---------------------FGVQICGAYPDTLARTVELIDQQC-TVDFIDIN 428
H SE L FG QI G P + EL+ + + ID+N
Sbjct: 368 HESEALPPTISSTADVVQGYDNSKDFKFGAQIAGNKPWHAIKATELLSRLTPNLRVIDLN 427
Query: 429 MGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDK-PITIKVRTGYFEGKNRIDSLIA 487
GCPID V +GAGS LL P +++ ++ + + PIT+K+RTG + LI
Sbjct: 428 CGCPIDQVFREGAGSALLDHPSKLEKMLRGMNAVSEMIPITVKIRTGTRDNSPNATKLIE 487
Query: 488 ------------DIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCA------RKASDDLQ 529
+IG G +AVT+HGR+RQQRY+K+ADW YI +CA + DD+
Sbjct: 488 RLVLGGHESGILNIGPPGVAAVTLHGRSRQQRYTKMADWSYIAECAALIKRLNEKKDDVT 547
Query: 530 ------------------VLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEI 571
LGNGD YS+ D++ H ++ + + M+ RGA+IKPW+F EI
Sbjct: 548 DTVREPDERMLPNGGKVFFLGNGDCYSHYDYDDHINNA-GVDAVMVGRGAIIKPWVFEEI 606
Query: 572 KEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDV 631
+ ++ D ++ ERL +++ +A++GL+ WGSD+ GV TTR F+LEWLS+T RY+P+GLL+
Sbjct: 607 QAGQYLDKSATERLAMIEKYAKYGLDTWGSDEHGVGTTRRFMLEWLSFTYRYVPIGLLEY 666
Query: 632 IPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAYD 688
+P + RPPA+ GR++LETL+ S + DWI+I+EM LG F F PKHKSNAY+
Sbjct: 667 LPPHIQDRPPAWRGRNELETLLGSPNYKDWIKITEMFLGPAHKDFKFEPKHKSNAYE 723
Score = 62.8 bits (151), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 66/150 (44%), Gaps = 26/150 (17%)
Query: 41 KAIAPVKKQFL-----RPPPTR-------ANQNDTVKYTNERSSQQHSSTLVKEKKSKRQ 88
K +AP+K +FL R P A+ + ER Q +KK+ Q
Sbjct: 57 KGVAPIKAEFLVQKSARSQPVEESALSLSADDAAEAAHYQEREGDQKG-----KKKASGQ 111
Query: 89 LKRERQQEKKSASHLCPEVAKSGDVS--SCPYKDKCRFSHDLDGF-KAQKPDDLE---GE 142
K + A LCP A S + S C + +KCRF HD+ + K K +DL G
Sbjct: 112 NKGRDFGRSEDAKGLCPSRAFSPEFSPKECKFGEKCRFEHDVRTYLKEHKREDLTTFGGI 171
Query: 143 CPFLSSEGPCPYGLACRFSGTH---RDVVD 169
CP ++G CPYG CR G+H RD D
Sbjct: 172 CPIWDAKGRCPYGFKCRLVGSHMTERDTSD 201
>sp|Q1E2F4|DUS3_COCIM tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Coccidioides
immitis (strain RS) GN=DUS3 PE=3 SV=1
Length = 724
Score = 323 bits (827), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 177/418 (42%), Positives = 242/418 (57%), Gaps = 60/418 (14%)
Query: 330 SREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLR 389
S +++L E LAPLTT GNLPFRR+C LGA T EMAM ++QG EWAL++
Sbjct: 305 SEKRRLYFGSETPVLAPLTTQGNLPFRRLCVELGAQFTYSEMAMSLPIVQGHKGEWALMK 364
Query: 390 RHSSEDL---------------------FGVQICGAYPDTLARTVELIDQQC-TVDFIDI 427
H SE L FGVQI P + E++ C + +D+
Sbjct: 365 AHQSEVLPPTIKPNQGVVKDYDHSRDLKFGVQISANKPWQALKATEVMTALCPHLRVVDL 424
Query: 428 NMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDK-PITIKVRTGYFEGKNRIDSLI 486
N GCPID+V GAGS LL P +++ I+ + ++ P++ K+R G + LI
Sbjct: 425 NCGCPIDLVYRDGAGSALLEHPSKLEKILRGMNAVSNEVPVSAKIRMGTKDNSPTALKLI 484
Query: 487 ADI------------GTWGASAVTVHGRTRQQRYSKLADWDYIYQCA------------- 521
+ G G +A+T+HGR+RQQRY++ ADW YI +CA
Sbjct: 485 ERLVLGGPEFTEIGQGPAGVAAITLHGRSRQQRYTREADWSYISECAALIRRLNERSDDL 544
Query: 522 ----RKASDDLQ-------VLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTE 570
R+A D LQ LGNGD YS+ D+ + + + + MIARGAL+KPWIF E
Sbjct: 545 TDTIREADDRLQAPGRRVYFLGNGDCYSHEDYYRAIGESG-VDTVMIARGALMKPWIFEE 603
Query: 571 IKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLD 630
I+ ++ D ++ ERL+I++ FA++GL WGSD+ GV TTR FLLE LS+T RYIP+GLL+
Sbjct: 604 IQAGQYLDKSASERLSIVEKFAKYGLNAWGSDEHGVGTTRRFLLELLSFTHRYIPIGLLE 663
Query: 631 VIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAYD 688
+P R+ RPPAY GR++LETL+ASD+ DWI+ISEM LG F F PKHKSN+Y+
Sbjct: 664 HLPPRIQDRPPAYKGRNELETLLASDNYKDWIKISEMFLGPAHKDFKFEPKHKSNSYE 721
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 69/144 (47%), Gaps = 27/144 (18%)
Query: 41 KAIAPVKKQFLRPPPTRANQNDTVKYTN--------------ERSSQQHSSTLVKEKKSK 86
K AP+++++L R+ Q +VK T+ ER+ ++ K+K
Sbjct: 56 KGTAPIREEYL----VRSGQEPSVKQTSDVRDDDEAEAARHQERAGEKGGKQRKKQKGQN 111
Query: 87 RQLKRERQQEKKSASHLCPEVAKSGDVS--SCPYKDKCRFSHDLDGF-KAQKPDDLE--- 140
K + Q++K LC V+ S ++S +C + D CRF H+L + K K +DL+
Sbjct: 112 TARKFGKSQDEKG---LCQSVSHSPELSPRTCQFGDNCRFEHNLRKYLKEYKREDLKTFN 168
Query: 141 GECPFLSSEGPCPYGLACRFSGTH 164
G CP + G C G CRF G+H
Sbjct: 169 GMCPVWDAYGLCFSGWKCRFVGSH 192
>sp|A4RLF4|DUS3_MAGO7 tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Magnaporthe oryzae
(strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=DUS3 PE=3
SV=1
Length = 739
Score = 322 bits (825), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 188/429 (43%), Positives = 243/429 (56%), Gaps = 68/429 (15%)
Query: 330 SREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLR 389
S +++L RE LAPLTT GNLPFRR+C LGA T EMAM ++QGQ SEWAL++
Sbjct: 314 SEKRRLYFGRETPVLAPLTTQGNLPFRRLCVDLGAQGTYSEMAMAKPIVQGQQSEWALMK 373
Query: 390 RHSSE-------------------------DL-FGVQICGA-YPDTLARTVELIDQQCTV 422
H SE DL FG QI + +P + L +
Sbjct: 374 AHESETRPPTLSPETLASNSPIVKVYDNSRDLRFGAQISASSHPLAIKAAECLTTFLPHL 433
Query: 423 DFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIE---ATSGTVDKPITIKVRTGYFE-- 477
ID+N GCPID++ GAGS LL + +++ II A SG V PIT K+R G E
Sbjct: 434 RLIDLNCGCPIDMIYKAGAGSALLEQHNKIERIIRGMNAVSGEV--PITCKLRIGVKENH 491
Query: 478 --GKNRIDSLIA-------DIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCA------R 522
K I+ + +G G +A+T+HGRTRQQRY K ADW YI +CA R
Sbjct: 492 PLAKKNIERAVFGSPDFRNQLGAPGCAAITLHGRTRQQRYKKPADWGYIAECAALIQSYR 551
Query: 523 KASDDLQ------------------VLGNGDIYSYLDWNKHKSDCPELASCMIARGALIK 564
D+L LGNGD YS+ D+ K D + + MI RGALIK
Sbjct: 552 DKRDELTDTVREPDASTLAPSSEVFFLGNGDCYSHADYYK-AIDESHVDTVMIGRGALIK 610
Query: 565 PWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYI 624
PW+F EI ++ D +S ERL ++ F R+G+E WG+D+ G+ TTR FLLE+LS+ RY+
Sbjct: 611 PWVFEEIAAGQYLDKSSTERLGYIERFCRYGMEAWGADEMGIGTTRRFLLEYLSFAYRYV 670
Query: 625 PVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKS 684
P+GLL+ +P +N RPPAY GRDDLETLMASD+ DWI+ISEM LG +GF F PKHKS
Sbjct: 671 PIGLLERLPPAINDRPPAYRGRDDLETLMASDNYRDWIKISEMFLGPAHEGFKFQPKHKS 730
Query: 685 NAYDRAENG 693
N+Y+ G
Sbjct: 731 NSYEMEAEG 739
Score = 40.0 bits (92), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 116 CPYKDKCRFSHDLDGFKAQ--KPD--DLEGECPFLSSEGPCPYGLACRFSGTHRDVVD 169
C + D+C SHDL + A+ +PD G+CP G C G C F +H + V+
Sbjct: 157 CSFGDRCNLSHDLRKYLAEGRRPDLETFGGKCPIFEVHGWCNAGWKCLFVRSHMEEVE 214
>sp|A1D1U0|DUS3_NEOFI tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 /
NRRL 181) GN=dus3 PE=3 SV=1
Length = 726
Score = 319 bits (817), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 173/417 (41%), Positives = 242/417 (58%), Gaps = 61/417 (14%)
Query: 332 EKKLIDFR-EKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRR 390
EK+ I F E LAPLTT GNLPFRR+C G T EMAM +L+QGQ SEWAL++
Sbjct: 308 EKRRIYFGPETPALAPLTTQGNLPFRRLCIDHGCQFTYSEMAMGMSLIQGQKSEWALMKA 367
Query: 391 HSSEDL---------------------FGVQICGAYPDTLARTVELIDQQC-TVDFIDIN 428
H SE L FG QI G P + EL+ + + ID+N
Sbjct: 368 HESEALPPTISSTADVVQGYDNSKDLKFGAQIAGNKPWHAIKATELLGRLTPNLRVIDLN 427
Query: 429 MGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDK-PITIKVRTGYFEGKNRIDSLIA 487
GCPID V +GAGS LL P +++ ++ + + PIT+K+RTG + LI
Sbjct: 428 CGCPIDQVFREGAGSALLDHPSKLEKMLRGMNAVSEMIPITVKIRTGTRDNSPNATKLIE 487
Query: 488 ------------DIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCA------RKASDDLQ 529
+IG G +A+T+HGR+RQQRY+K ADW YI +CA + DD+
Sbjct: 488 RLVLGGHESSMLNIGPPGVAAITLHGRSRQQRYTKSADWSYIAECAALIKRLNEKKDDVT 547
Query: 530 ------------------VLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEI 571
LGNGD YS+ D++ H ++ + + M+ RGA+IKPW+F EI
Sbjct: 548 DTVREPDERMLPNGGKVFFLGNGDCYSHHDYDDHINNA-GVDAVMVGRGAIIKPWVFEEI 606
Query: 572 KEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDV 631
+ ++ D ++ ERL +++ +A++GL+ WGSD+ GV TTR F+LEWLS+T RY+P+GLL+
Sbjct: 607 QAGQYLDKSATERLAMVEKYAKYGLDTWGSDEHGVGTTRRFMLEWLSFTYRYVPIGLLEY 666
Query: 632 IPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAYD 688
+P + RPPA+ GR++LETL+ S + DWI+I+EM LG F F PKHKSNAY+
Sbjct: 667 LPPHIQDRPPAWRGRNELETLLGSPNYKDWIKITEMFLGPAHKDFKFEPKHKSNAYE 723
Score = 60.1 bits (144), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 63/150 (42%), Gaps = 26/150 (17%)
Query: 41 KAIAPVKKQFL-----RPPPTR-------ANQNDTVKYTNERSSQQHSSTLVKEKKSKRQ 88
K +AP+K +FL R P A+ + ER +Q + R
Sbjct: 57 KGVAPIKAEFLVQKSARSQPVEESVVSLSADDAAEAAHYQEREGEQKGKKRASGQNKGRD 116
Query: 89 LKRERQQEKKSASHLCPEVAKSGDVS--SCPYKDKCRFSHDLDGF-KAQKPDDLE---GE 142
R + A LCP A S + S C + +KCRF HD+ + K K +DL G
Sbjct: 117 FGR-----SEDAKGLCPSRAFSPEFSPKECKFGEKCRFEHDVRTYLKEHKREDLTTFGGI 171
Query: 143 CPFLSSEGPCPYGLACRFSGTH---RDVVD 169
CP ++G CPYG CR +H RD D
Sbjct: 172 CPIWDAKGRCPYGFKCRLVRSHMTERDTSD 201
>sp|A1CNY3|DUS3_ASPCL tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1) GN=dus3 PE=3 SV=1
Length = 728
Score = 318 bits (815), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 173/418 (41%), Positives = 240/418 (57%), Gaps = 60/418 (14%)
Query: 330 SREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLR 389
S +++L E LAPLTT GNLPFRR+C LGA T EMAM +L+QGQ SEWAL++
Sbjct: 309 SEKRRLYFGPETPALAPLTTQGNLPFRRLCTDLGAQFTYSEMAMGMSLIQGQKSEWALMK 368
Query: 390 RHSSEDL---------------------FGVQICGAYPDTLARTVELIDQQCT-VDFIDI 427
H +E + FG QI P + EL+ + + ID+
Sbjct: 369 AHETEAIPPTISSGANIVQGYDNSQDLKFGAQIAANKPWHAIKATELLGRLTPHLRVIDL 428
Query: 428 NMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDK-PITIKVRTGYFEGKNRIDSLI 486
N GCPID V GAGS LL +++ I+ + + PIT+K+RTG + LI
Sbjct: 429 NCGCPIDQVYRDGAGSALLDHQSKLEKILRGMNAVSEAIPITVKIRTGTRDASPNALKLI 488
Query: 487 A------------DIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCA------RKASDDL 528
+IG G +A+T+HGRTRQQRY+K ADW YI +CA + +D++
Sbjct: 489 ERLTLGGHESSMLNIGPPGVAAITLHGRTRQQRYTKQADWSYIAECAALIKRLNEKTDEV 548
Query: 529 Q------------------VLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTE 570
LGNGD YS+ D+ H ++ + + M+ RGA+IKPW+F E
Sbjct: 549 TDTVREPDARTLPNGGKVYFLGNGDCYSHKDYEDHINNA-GVDAVMVGRGAIIKPWVFEE 607
Query: 571 IKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLD 630
I+ ++ D T+ ERL ++ FA++GL+ WGSD+ GV TTR F+LEWLS+T RY+P+GLLD
Sbjct: 608 IQTGQYLDKTATERLAYVEKFAKYGLDTWGSDEHGVGTTRRFMLEWLSFTQRYVPIGLLD 667
Query: 631 VIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAYD 688
+P + RPPA+ GR++LETL+ S + DWI+I+EM LG F F PKHKSNAY+
Sbjct: 668 YLPPNIQDRPPAWRGRNELETLLGSPNYKDWIKITEMFLGPAHKDFKFEPKHKSNAYE 725
Score = 77.4 bits (189), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 90/201 (44%), Gaps = 30/201 (14%)
Query: 41 KAIAPVKKQFL-----RPPPTRA-NQNDTVKYTNERSSQQHSSTLVKEKKSKRQLKRERQ 94
K IAPVK +F+ RP P A N D S QQ S +KK+ Q K
Sbjct: 62 KGIAPVKAEFIVQKSARPQPVEADNTVDADDAAEAASHQQRESEQKGKKKTSGQNKGRDF 121
Query: 95 QEKKSASHLCPEVAKSGDVS--SCPYKDKCRFSHDLDGF-KAQKPDDLE---GECPFLSS 148
+ A LCP A S + S C + D+CRF HD+ + K K DL G CP +
Sbjct: 122 GQHNDAKGLCPSRAFSPEFSPKECKFGDRCRFEHDVRTYLKEHKRADLTTFGGICPLWEA 181
Query: 149 EGPCPYGLACRFSGTHRDVVDVAGSTNTL-------RKSSE-----------VNGLNKDV 190
+G CPYG CRF G+H + A L RK ++ VN ++ +
Sbjct: 182 KGRCPYGYKCRFVGSHMTERETADGRKELVLVEDETRKKAQPLVPHASEDGIVNAVSMED 241
Query: 191 QKLLWKNKMKFPKADAKLKSL 211
+ + + K+K P++DA L L
Sbjct: 242 KVAVARRKIKTPRSDAYLTWL 262
>sp|Q5BF62|DUS3_EMENI tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=dus3 PE=3 SV=1
Length = 714
Score = 318 bits (814), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 166/418 (39%), Positives = 241/418 (57%), Gaps = 60/418 (14%)
Query: 330 SREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLR 389
S +++L E LAPLTT GNLPFRR+C LGA +T EMA+ L+QG EWAL+R
Sbjct: 295 SEKRRLYFGPETPALAPLTTQGNLPFRRLCVELGAQLTYSEMALSMPLIQGHKPEWALMR 354
Query: 390 RHSSEDL---------------------FGVQICGAYPDTLARTVELIDQQC-TVDFIDI 427
H +E L FG QI G + + E++ + ID+
Sbjct: 355 AHETEALPPTVSARASVVQDYDNSKDMKFGAQIAGNKYRWVMKATEVLSSLTPNLRVIDL 414
Query: 428 NMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDK-PITIKVRTGYFEGKNRIDSLI 486
N GCPID++ +G+GS LL P +++ ++ + ++ PIT+K+RTG + L+
Sbjct: 415 NCGCPIDLLYREGSGSALLDAPSKLEKMLRGMNAVSEQIPITVKIRTGTRDNTPNAQKLV 474
Query: 487 ADI------------GTWGASAVTVHGRTRQQRYSKLADWDYIYQCA------RKASDDL 528
+ G G +A+T+HGR+RQQRY++ A+W+YI + A + SD++
Sbjct: 475 ERLILGGHEASMLNCGPSGVAAITLHGRSRQQRYTREANWEYISETAALIKRLNEKSDEV 534
Query: 529 Q------------------VLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTE 570
LGNGD YS++D+ H + ++ S M+ RGALIKPW+F E
Sbjct: 535 TDTIREPEERMRPNGGKTWFLGNGDCYSHVDYEDHIKNA-KVDSVMVGRGALIKPWLFEE 593
Query: 571 IKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLD 630
I+ ++ D ++ ERL ++ FAR+G+E WGSD+ G+ TR FLLEWLS+ CRY+P+GLL+
Sbjct: 594 IQAGQYLDKSASERLAYVEKFARYGMETWGSDEYGIGITRRFLLEWLSFACRYVPIGLLE 653
Query: 631 VIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAYD 688
+P ++N RPP + GR+D+ETLM S DWI+ISEM LG F F PKHKSN+YD
Sbjct: 654 YLPPKINDRPPYWRGRNDMETLMGSHDYRDWIKISEMFLGPAHKDFKFEPKHKSNSYD 711
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 17/137 (12%)
Query: 41 KAIAPVKKQFLRPPPTRA--------NQNDTVKYTNERSSQQHSSTLVKEKKSKRQLKRE 92
K +AP+K +FL P P + + + Y + ++ + R R
Sbjct: 51 KGVAPIKAEFLIPKPKQGQAAVSSTDDAAEAAAYKDREDEKKGKKKKTTGQNKNRTFGRS 110
Query: 93 RQQEKKSASHL-CPEVAKSGDVSSCPYKDKCRFSHDLDGF-KAQKPDDLE---GECPFLS 147
+ + AS + PE + + CP+ DKCRF HDL + K K +DL G CP S
Sbjct: 111 QDSKGLCASRVYSPEFSPA----ECPFGDKCRFEHDLRTYLKEHKREDLNTFNGVCPVWS 166
Query: 148 SEGPCPYGLACRFSGTH 164
+ G C G CRF G+H
Sbjct: 167 ARGKCDAGWKCRFVGSH 183
>sp|Q2UL89|DUS3_ASPOR tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Aspergillus oryzae
(strain ATCC 42149 / RIB 40) GN=dus3 PE=3 SV=1
Length = 730
Score = 317 bits (813), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 174/422 (41%), Positives = 242/422 (57%), Gaps = 61/422 (14%)
Query: 332 EKKLIDFR-EKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRR 390
EK+ I F E LAPLTT GNLPFRR+C LGA T EMA+ L+QGQ EWAL+R
Sbjct: 310 EKRRIYFGPETPVLAPLTTQGNLPFRRLCIELGAQFTYSEMALSMPLIQGQRGEWALMRA 369
Query: 391 HSSEDL---------------------FGVQICG-AYPDTLARTVELIDQQCTVDFIDIN 428
H +E L FG QI + L T L + ID+N
Sbjct: 370 HETEMLPPTISPGADVVQGYDHSKDFRFGAQIAANKHWQALKATEVLSAYTPNLRVIDLN 429
Query: 429 MGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDK-PITIKVRTGYFEGK-------- 479
GCPID++ +GAGS LL P +++ I+ + + PIT K+R G +
Sbjct: 430 CGCPIDLLFREGAGSALLEHPSKLERILRGMNAVSQEIPITAKIRMGTRDNSPNALKLAE 489
Query: 480 ----NRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCAR----------KAS 525
+S +G G +A+T+HGR+RQQRY++ ADW YI +CA + +
Sbjct: 490 RLILGGYESSTLGLGAPGVAALTLHGRSRQQRYTRQADWGYISECAALIKRLNEKTDQVT 549
Query: 526 DDLQ--------------VLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEI 571
D ++ LGNGD YS+LD++ H ++ + + M+ RGALIKPW+F EI
Sbjct: 550 DTVREPDPRTQPNGGKTWFLGNGDCYSHLDYDDHVNNA-GVDTVMVGRGALIKPWLFEEI 608
Query: 572 KEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLDV 631
+ ++ D ++ ERL++++ FA++GLE WGSD+ GV TTR FLLEWLS+ CRYIP+GLL+
Sbjct: 609 QAGQYLDKSASERLSLVEKFAKYGLETWGSDEHGVGTTRRFLLEWLSFACRYIPIGLLEY 668
Query: 632 IPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAYDRAE 691
+P R+ RPP++ GR++LETLM S + DWI+I+EM LG F F PKHKSNA++
Sbjct: 669 LPPRIQDRPPSWRGRNELETLMGSHNYKDWIKITEMFLGPAHKDFRFEPKHKSNAWEAEA 728
Query: 692 NG 693
G
Sbjct: 729 EG 730
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 67/145 (46%), Gaps = 12/145 (8%)
Query: 30 VHNLTPEELVAKAIAPVKKQFLRPPPT----RANQNDTVKYTNERSSQQHSSTLVKEKKS 85
+N+ P+ + + +APVK +F+ P T + N +D + +Q + K+KK
Sbjct: 53 ANNIAPQRM--RGVAPVKPEFIIPRATGTEPQPNTDDAAEAARHEGAQGQEAGKKKKKKP 110
Query: 86 KRQLKRERQQEKKSASHLCPEVAKSGDVS--SCPYKDKCRFSHDLDGF-KAQKPDDL--- 139
Q + LCP + + S +C + +KCRF HDL + K K DL
Sbjct: 111 TGQNTNRTFGSSQDEKGLCPSRIFTPEFSPGACQWGEKCRFEHDLRTYLKEYKRGDLTTF 170
Query: 140 EGECPFLSSEGPCPYGLACRFSGTH 164
+G CP ++G C G CR G+H
Sbjct: 171 DGVCPVWDAKGKCLSGWKCRLVGSH 195
>sp|A2QAU6|DUS3_ASPNC tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Aspergillus niger
(strain CBS 513.88 / FGSC A1513) GN=dus3 PE=3 SV=1
Length = 748
Score = 315 bits (807), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 176/422 (41%), Positives = 242/422 (57%), Gaps = 61/422 (14%)
Query: 330 SREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLR 389
S +++L E LAPLTT GN+PFRR+C LGA T EMAM L+QG SEWAL+R
Sbjct: 327 SEKRRLYFGPETPALAPLTTQGNMPFRRLCVELGAQFTYSEMAMSLPLIQGNKSEWALMR 386
Query: 390 RHSSEDL---------------------FGVQICGAYP-DTLARTVELIDQQCTVDFIDI 427
H SE L FG QI P T L + ID+
Sbjct: 387 AHESEMLPPTMLPGADIVQGYDNSKDMKFGAQIAANKPWQAFKATEALAKVTPNLRVIDL 446
Query: 428 NMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDK-PITIKVRTGYFEGK------- 479
N GCPID+V GAGS LL P +++ II + D+ PIT+K+R G +
Sbjct: 447 NCGCPIDLVFKDGAGSALLEHPSKLEKIIRGMNTVSDQIPITVKIRMGTKDNNPNALKLT 506
Query: 480 NRI------DSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCA------------ 521
R+ SL+ G GA+A+T+HGR+RQQRY++ ADW+YI +CA
Sbjct: 507 ERLLLGGYETSLLHHDGAAGAAAITLHGRSRQQRYTRQADWEYISECAALIKRLNEKTDA 566
Query: 522 ------------RKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFT 569
+ + LGNGD YS++D++ H ++ + + M+ RG LIKPW+F
Sbjct: 567 VTDTIREPDARTQPNGGKVYFLGNGDCYSHVDYDNHINNA-GVDAVMLGRGPLIKPWLFE 625
Query: 570 EIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLL 629
EI+ ++ D ++ ERL +++ F ++GLE WGSD+ GV TTR FL+EWLS+T RY+P+GLL
Sbjct: 626 EIQAGQYLDKSATERLAMIEKFCKYGLEAWGSDEHGVGTTRRFLMEWLSFTRRYVPIGLL 685
Query: 630 DVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAYDR 689
+ +P +N RPPA+ GR++LETL+AS + DW++ISEM LG F F PKHKSN+YD
Sbjct: 686 EHLPPYINDRPPAFRGRNELETLLASANYKDWLKISEMFLGPAHKDFKFEPKHKSNSYDE 745
Query: 690 AE 691
AE
Sbjct: 746 AE 747
Score = 46.2 bits (108), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 100 ASHLCPEVAKSGDVS--SCPYKDKCRFSHDLDGF-KAQKPDDL---EGECPFLSSEGPCP 153
A LC V + S C + +KCR+ HDL + K K +DL G CP G C
Sbjct: 133 AKGLCSSVNFRPEFSPAECTFGEKCRYEHDLRTYLKEHKREDLTTFNGMCPVWDVHGKCF 192
Query: 154 YGLACRFSGTHRDVVDVAGSTNTL 177
G CRF G+H + + A L
Sbjct: 193 VGWKCRFVGSHSEERETADGRKEL 216
>sp|Q757E3|DUS3_ASHGO tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=DUS3 PE=3 SV=1
Length = 647
Score = 314 bits (804), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 165/382 (43%), Positives = 237/382 (62%), Gaps = 22/382 (5%)
Query: 327 KTHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWA 386
+ ++EKK +D K ++PLTTVGNLPFRR+ + LGADVT EMA+ L+QG SEWA
Sbjct: 262 RYFAQEKKPLDLHHKKIVSPLTTVGNLPFRRLMRQLGADVTYSEMALAVPLIQGTNSEWA 321
Query: 387 LLRRHSSE-DLFGVQICGAYPDTLARTVELIDQQCT--VDFIDINMGCPIDIVVNKGAGS 443
L + H SE FGVQ+ + P A+ E + + I++N GCPID++ +G+GS
Sbjct: 322 LPKAHCSELPGFGVQLACSKPWQAAKAAEALADNVGDGLSEINLNSGCPIDLLYRQGSGS 381
Query: 444 CLLTKPMRMKGIIEATSG-TVDKPITIKVRTGYFEGKNRIDSLIAD-IGTWGASAVTVHG 501
LL P RM + A + + D P+++K+RTG +G L + +A+T+HG
Sbjct: 382 ALLDNPARMIRCLNAMNYVSKDVPVSVKLRTGTRDGHPIALGLCKRLVMETDVAAITLHG 441
Query: 502 RTRQQRYSKLADWDYIYQCA----------------RKASDDLQVLGNGDIYSYLDWNKH 545
RTRQQRY++ ADWDY+ Q A R+ +Q +GNGD ++ DW +H
Sbjct: 442 RTRQQRYTRSADWDYVGQVADALRSYETERAEKLKDREGKLRIQFVGNGDCNNWEDWYRH 501
Query: 546 KSDCPELASCMIARGALIKPWIFTEIKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKG 605
+ + S M+ARGALIKPWIF E+ +++ D +S ERL I++D+ARF ++HWG+D+ G
Sbjct: 502 LEN-ENVDSVMVARGALIKPWIFEEVDARQYIDKSSSERLEILRDYARFSMDHWGTDEYG 560
Query: 606 VETTRHFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPAYSGRDDLETLMASDSAADWIRIS 665
+ R + E++S+ RY+P+G+ + P LN RPP + GRDDLETL+ S AADWI++S
Sbjct: 561 IALCRRYFCEFMSFFHRYVPMGICERYPVLLNERPPNWRGRDDLETLLGSTDAADWIKLS 620
Query: 666 EMLLGKVPDGFTFAPKHKSNAY 687
E G PD F F PKHKSN+Y
Sbjct: 621 EQFFGPTPDKFVFQPKHKSNSY 642
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 91/193 (47%), Gaps = 24/193 (12%)
Query: 30 VHNLTPEELVAKAIAPVKKQFLRPPPTRANQNDTVKYTNERSSQQHSSTLVKEKKSKRQL 89
V L PE +VA A RA ++D + T+ER + T K KK++ Q
Sbjct: 30 VAQLKPEYVVAGAAQ-----------LRAAESDE-ELTSERMVEPEGGTRKKSKKARGQN 77
Query: 90 KRERQQEKKSASHLCPEVAKSGDVSSCPYKDKCRFSHDLDGFKAQKPDDLE----GECPF 145
K ++ K LCP +A+ G+ +C + +CR+ HD+ + K ++E CP
Sbjct: 78 KNRDNRQAKEEHQLCPRLAQ-GNADACAFGAQCRYLHDVRTYLEHKTAEIECPQFTGCPV 136
Query: 146 LSSEGPCPYGLACRFSGTH--RDVVDVAGSTNTLRK-----SSEVNGLNKDVQKLLWKNK 198
++ G CP G CRF +H + +++A + R + EVN + D + L K +
Sbjct: 137 FAATGRCPMGFKCRFLSSHCNMETLELATTPEDERAKLWSVNHEVNHIASDRKLDLVKRR 196
Query: 199 MKFPKADAKLKSL 211
FP+++ L+ +
Sbjct: 197 APFPRSEHVLEII 209
>sp|Q0CZL3|DUS3_ASPTN tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Aspergillus terreus
(strain NIH 2624 / FGSC A1156) GN=dus3 PE=3 SV=1
Length = 719
Score = 308 bits (788), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 169/418 (40%), Positives = 239/418 (57%), Gaps = 60/418 (14%)
Query: 330 SREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLR 389
S +++L E LAPLTT GNLPFRR+C LGA EMAM L+QG SEWALLR
Sbjct: 300 SEKRRLYFGPETPTLAPLTTQGNLPFRRLCVELGAQFVYSEMAMSMPLIQGTKSEWALLR 359
Query: 390 RHSSE--------------------DL-FGVQICGAYPDTLARTVELIDQQC-TVDFIDI 427
H +E D+ FG QI P + E++ + + ID+
Sbjct: 360 SHETELTPPTISPSDKIVQGYDNSKDMKFGAQIAANKPWQALKATEVLSKFTPNLRVIDL 419
Query: 428 NMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATSGTVDK-PITIKVRTGYFEGKNRIDSLI 486
N GCPID++ +GAGS LL +++ I+ + ++ PI++K+R G + L+
Sbjct: 420 NCGCPIDLLFREGAGSALLEHHSKLEKILRGMNAVSEEIPISVKIRLGVRDNAPNAQKLV 479
Query: 487 A------------DIGTWGASAVTVHGRTRQQRYSKLADWDYIYQCA------RKASDDL 528
+G G +A+T+HGR+RQQRY+K ADW YI + A K D+L
Sbjct: 480 ERLVLGGHESHLLGLGPCGTAAITLHGRSRQQRYTKQADWGYIAETAALIKNLNKRKDEL 539
Query: 529 Q------------------VLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTE 570
LGNGD +S+ D++ H ++ + S MI RGALIKPW+F E
Sbjct: 540 TDTIYEPDERMLPNGGKVYFLGNGDCFSHQDYDDHINNA-GVDSVMIGRGALIKPWLFEE 598
Query: 571 IKEQRHWDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFLLEWLSYTCRYIPVGLLD 630
I+ ++ D ++ ERL++++ FA++GL+ WGSD+ GV TR FLLEWLS+ RY+PVGLL+
Sbjct: 599 IQTGQYLDKSASERLSLVEKFAKYGLDTWGSDEYGVGITRRFLLEWLSFHRRYVPVGLLE 658
Query: 631 VIPQRLNWRPPAYSGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAYD 688
+P + RPPA+ GR+++ETL+ASD DWI+I+EM LG F F PKHKSNAY+
Sbjct: 659 YLPPNIQDRPPAWRGRNEMETLLASDHYKDWIKITEMFLGPAHKDFKFEPKHKSNAYE 716
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 83/199 (41%), Gaps = 38/199 (19%)
Query: 41 KAIAPVKKQFL---RPPPTRANQNDT-----VKYTNERSSQQHSSTLVKEKKSKRQLKRE 92
K +AP+K ++L P A + +T + ER + ++ + + R R
Sbjct: 58 KGVAPIKAEYLVDINAIPVSAPEENTDDAAEAAHHEEREDDKKKKPKIRGQNTNRTFGR- 116
Query: 93 RQQEKKSASHLCPEVAKSGDVS--SCPYKDKCRFSHDLDGF-KAQKPDDLE---GECPFL 146
Q EK LCP + + S C + DKCRF HDL + K K +DL G CP
Sbjct: 117 YQDEKG----LCPSRVFAPEFSPGECRFGDKCRFEHDLRTYLKEHKREDLTTFGGVCPVW 172
Query: 147 SSEGPCPYGLACRFSGTHRDVVDVAGSTNTL---------RKSSEV----------NGLN 187
+ G C G CRF G+H D L +KS + N ++
Sbjct: 173 DARGKCYAGWKCRFVGSHMTERDTPDGRKELVLVEDEERKKKSPRLVPYASEEGLANTIS 232
Query: 188 KDVQKLLWKNKMKFPKADA 206
D + L + K+K P+ADA
Sbjct: 233 VDDRNALSRKKIKTPRADA 251
>sp|P37567|DUS1_BACSU Probable tRNA-dihydrouridine synthase 1 OS=Bacillus subtilis
(strain 168) GN=dus1 PE=3 SV=1
Length = 333
Score = 131 bits (330), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 112/233 (48%), Gaps = 3/233 (1%)
Query: 336 IDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSED 395
I + ++ LAP+ V N FR K GA + C EM +L A +L E
Sbjct: 7 IQLKNRVVLAPMAGVCNSAFRLTVKEFGAGLVCAEMVSDKAILYNNARTMGMLYIDEREK 66
Query: 396 LFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGI 455
+QI G +TL + +DQ T D IDINMGCP+ + AG+ L P ++ +
Sbjct: 67 PLSLQIFGGKKETLVEAAKFVDQNTTADIIDINMGCPVPKITKCDAGAKWLLDPDKIYEM 126
Query: 456 IEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWD 515
+ A V+KP+T+K+R G+ E + G AV +HGRTR Q Y A+WD
Sbjct: 127 VSAVVDAVNKPVTVKMRMGWDEDHIFAVKNAQAVERAGGKAVALHGRTRVQMYEGTANWD 186
Query: 516 YIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIF 568
I + K S + V+GNGD+ + D K D + MI R AL PW+
Sbjct: 187 IIKEV--KQSVSIPVIGNGDVKTPQD-AKRMLDETGVDGVMIGRAALGNPWMI 236
>sp|Q7VNP2|DUSB_HAEDU tRNA-dihydrouridine synthase B OS=Haemophilus ducreyi (strain
35000HP / ATCC 700724) GN=dusB PE=3 SV=1
Length = 320
Score = 126 bits (317), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 90/279 (32%), Positives = 140/279 (50%), Gaps = 11/279 (3%)
Query: 337 DFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWAL-LRRHSSED 395
+ +++LAP+ + + PFRR+C LGA +T EM M TN + L L H+
Sbjct: 7 EINSRIFLAPMAGITDQPFRRLCSQLGAGLTFSEM-MSTNPDVWHTEKSRLRLAHHAEIG 65
Query: 396 LFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGI 455
+ VQI G+ P +A + I+ IDINMGCP V K AGS LL +P + I
Sbjct: 66 INAVQIAGSEPTEIAEAAK-INVAYGAQIIDINMGCPAKKVNKKMAGSALLREPQLVARI 124
Query: 456 IEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWD 515
++A VD P+T+K+RTG+ + + G SA+T+HGRTR ++ A+++
Sbjct: 125 LDAVVNAVDVPVTLKIRTGWDKTHKNFLQIAKIAEKAGISALTIHGRTRDCLFNGQAEYE 184
Query: 516 YIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQR 575
I A K + + ++ NGDI S K D + MI RG+ +PW+F E+K+
Sbjct: 185 SIK--AVKQAVFMPIIANGDITSPQK-AKDVLDYTGADAVMIGRGSFGRPWLFQELKQFL 241
Query: 576 H----WDITSGERLNIMKDFARFGLEHWGSDKKGVETTR 610
D++ E+ +M L H+ ++KG R
Sbjct: 242 ETGDIIDLSIDEKCQLMLKHIE-DLHHFYGEQKGYRIAR 279
>sp|Q9CLW3|DUSB_PASMU tRNA-dihydrouridine synthase B OS=Pasteurella multocida (strain
Pm70) GN=dusB PE=3 SV=2
Length = 332
Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/234 (37%), Positives = 126/234 (53%), Gaps = 10/234 (4%)
Query: 338 FREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLR--RHSSED 395
+ +++LAP+ + + PFRR+C GA +T EM M TN Q +E + LR H
Sbjct: 8 LKNRIFLAPMAGITDQPFRRICTHYGAGLTFSEM-MSTNP-QVWHTEKSKLRLAHHQEAG 65
Query: 396 LFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGI 455
+ VQI G PD +A+ + I+ + + IDINMGCP V K AGS LL P +K I
Sbjct: 66 INAVQIAGCDPDEMAKAAQ-INVEYGAEIIDINMGCPAKKVNRKMAGSALLQYPDLVKQI 124
Query: 456 IEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTW-GASAVTVHGRTRQQRYSKLADW 514
+ +V P+T+K+RTG+ + NR IA I G A+T+HGRTR + A++
Sbjct: 125 LNKVVKSVTVPVTLKIRTGW-DKDNRNCLEIAKIAEQCGIQALTIHGRTRSCMFEGEAEY 183
Query: 515 DYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIF 568
D I A K + ++ NGDI S + K+ D + MI RG+L PW+F
Sbjct: 184 DNIK--AVKEQLSIPIIANGDITS-AEKAKYVLDYTNADAIMIGRGSLGNPWLF 234
>sp|P45672|DUS_AZOBR Probable tRNA-dihydrouridine synthase OS=Azospirillum brasilense
GN=dus PE=3 SV=1
Length = 328
Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 123/250 (49%), Gaps = 8/250 (3%)
Query: 336 IDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSED 395
I + LAP++ V +LPFRR+ K G + EM +++ ++ +
Sbjct: 8 ISLEGPVILAPMSGVTDLPFRRLVKQSGCGLVVSEMVASQAMIRENRQTLRMVECEPEQF 67
Query: 396 LFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGI 455
VQ+ G PD +A +L ++ IDIN GCP+ VVN AGS L+ I
Sbjct: 68 PMAVQLAGCEPDVMAEAAKL-NEDRGAAIIDINFGCPVKKVVNGHAGSSLMRDEALAARI 126
Query: 456 IEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWD 515
+EAT+ V P+T+K+R G+ + L G VTVHGRTR+Q Y+ ADW
Sbjct: 127 LEATAKAVTIPVTLKMRKGWDDSSLNAPRLARIAEECGIKLVTVHGRTREQFYNGTADWS 186
Query: 516 YIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQR 575
+I K + + V+ NGDI S+ ++ ++ MI RGA +PW ++
Sbjct: 187 FIRSV--KEAVSIPVVVNGDITSFDAVDRALAESGA-DGVMIGRGAYGRPWFPAQVM--- 240
Query: 576 HWDITSGERL 585
H+ I +GERL
Sbjct: 241 HY-IRTGERL 249
>sp|O67533|DUS_AQUAE Probable tRNA-dihydrouridine synthase OS=Aquifex aeolicus (strain
VF5) GN=dus PE=3 SV=1
Length = 316
Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 138/267 (51%), Gaps = 11/267 (4%)
Query: 341 KLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQ 400
++ LAP+ + + FRR+C+ LGAD T E+ +L+ L E +Q
Sbjct: 7 EVILAPMASYTHSAFRRLCRRLGADRTYTELISAVGVLR-NGIPMKLAYFTEEERPIHIQ 65
Query: 401 ICGAYPDTLARTVELIDQQCTVDFIDINMGCPI-DIVVNKGAGSCLLTKPMRMKGIIEAT 459
+ G+ P+ +A+ +I ++ DFIDIN GC + ++ NK AG L P+ M +++ T
Sbjct: 66 VFGSNPEEIAQASVVIAKELKPDFIDINFGCSVPKVLRNKAAGYMLQCPPL-MGEVVKET 124
Query: 460 SGTVDK---PITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDY 516
+ P++ K+R G+ K+ ++ ++ ++ G S + +H RT +Q +S A W
Sbjct: 125 VEALKPYGIPVSAKIRLGF--EKDEVERIVEELQKAGVSLIAIHARTAKQGFSGKALWHR 182
Query: 517 IYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQRH 576
I + + AS + ++G+GD+ S+ D + + E M+ R AL PWIF E KE+R
Sbjct: 183 IKEAKKVAS--VPIIGSGDVKSWRDIERMFEET-ECDGVMVGRAALSNPWIFKEFKEKRD 239
Query: 577 WDITSGERLNIMKDFARFGLEHWGSDK 603
++ ER++ + + E+ +K
Sbjct: 240 IEVGLKERMDFILEELSMMTEYMSREK 266
>sp|O52536|DUSB_KLEPN tRNA-dihydrouridine synthase B OS=Klebsiella pneumoniae GN=dusB
PE=3 SV=1
Length = 321
Score = 120 bits (300), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 90/250 (36%), Positives = 132/250 (52%), Gaps = 12/250 (4%)
Query: 338 FREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSE-DL 396
R +L AP+ + + PFR +C +GA +T EM M +N ++ + L H E +
Sbjct: 8 LRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEM-MSSNPQVWESDKSRLRMVHVDEPGI 66
Query: 397 FGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGII 456
VQI G+ P +A I+ + IDINMGCP V K AGS LL P ++K I+
Sbjct: 67 RTVQIAGSVPKEMAAAAR-INVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDQVKSIL 125
Query: 457 EATSGTVDKPITIKVRTGYFEGKNRIDSLIADIG-TWGASAVTVHGRTRQQRYSKLADWD 515
A VD P+T+K+RTG+ E ++R IA + G A+T+HGRTR ++ A++D
Sbjct: 126 TAVVKAVDVPVTLKIRTGW-EPEHRNCVEIAQLAEECGIQALTIHGRTRACLFNGDAEYD 184
Query: 516 YIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKEQR 575
I +K S + V+ NGDI L + D + MI R A +PWIF EI+
Sbjct: 185 SIRAVKQKVS--IPVIANGDITDPLK-ARAVLDYTGADALMIGRAAQGRPWIFREIQ--- 238
Query: 576 HWDITSGERL 585
H+ + +GE L
Sbjct: 239 HY-LDTGELL 247
>sp|Q9HUW1|DUSB_PSEAE tRNA-dihydrouridine synthase B OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=dusB
PE=3 SV=1
Length = 332
Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/262 (36%), Positives = 128/262 (48%), Gaps = 42/262 (16%)
Query: 341 KLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMC-TNLLQGQASEWALLRRHSSEDL-FG 398
+L LAP+ V + PFR++C+ LGA + EM L + S L+ H ED
Sbjct: 14 RLILAPMAGVTDRPFRQLCRRLGAGMVVSEMVTSDVRLWNSRKSRLRLI--HDGEDEPRS 71
Query: 399 VQICGAYPDTLA----RTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKG 454
VQI G P LA R VEL Q IDINMGCP V NK AGS LL +
Sbjct: 72 VQIAGGDPAMLAEAAQRNVELGAQ-----IIDINMGCPAKKVCNKAAGSALLRDEALVAE 126
Query: 455 IIEATSGTVDKPITIKVRTGYFEGKNRIDSLIADIG-TWGASAVTVHGRTRQQRYSKLAD 513
I++A VD P+T+K+RTG+ + NR +A + G A+ VHGRTR Y+ A+
Sbjct: 127 ILDAVVRAVDVPVTLKIRTGW-DRDNRNGVTVAKLAEQAGIQALAVHGRTRADLYTGEAE 185
Query: 514 WDYIYQCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELA----------SCMIARGALI 563
++ I A K + + V NGDI D PE A + +I R A
Sbjct: 186 YETI--AAIKQAVSIPVFANGDI-----------DSPEKARKVIEQTGVDALLIGRAAQG 232
Query: 564 KPWIFTEIKEQRHWDITSGERL 585
+PWIF EI H+ + +GE L
Sbjct: 233 RPWIFREID---HY-LRTGEHL 250
>sp|Q8PCH1|DUSB_XANCP tRNA-dihydrouridine synthase B OS=Xanthomonas campestris pv.
campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=dusB PE=3 SV=1
Length = 332
Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/235 (35%), Positives = 114/235 (48%), Gaps = 8/235 (3%)
Query: 341 KLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQ 400
K+ LAP+ V + PFR +CK LGA + EM + G + D VQ
Sbjct: 11 KVILAPMAGVTDKPFRLLCKRLGAGLAVSEMTISDPRFWGTRKSLHRMDHAGEPDPISVQ 70
Query: 401 ICGAYPDTLARTVEL-IDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEAT 459
I G P LA +D IDINMGCP V N AGS L+ + I+ A
Sbjct: 71 IAGTEPQQLAEAARYNVDHGA--QLIDINMGCPAKKVCNAWAGSALMRDEDLVARILSAV 128
Query: 460 SGTVDKPITIKVRTGYFEGKNRIDSLIADIGT-WGASAVTVHGRTRQQRYSKLADWDYIY 518
VD P+T+K+RTG+ + +R IA I G +A+ VHGRTR Q Y+ A++ I
Sbjct: 129 VRAVDVPVTLKIRTGW-DCDHRNGPTIARIAQDCGIAALAVHGRTRDQHYTGTAEYATIA 187
Query: 519 QCARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIFTEIKE 573
Q KA+ + V+ NGDI S + D + + MI R A +PWIF E+
Sbjct: 188 QI--KAALQIPVIANGDIDSPQKAAQVLRDT-GVDAVMIGRAAQGRPWIFGEVAH 239
>sp|O52539|DUSB_ERWCA tRNA-dihydrouridine synthase B OS=Erwinia carotovora GN=dusB PE=3
SV=2
Length = 321
Score = 117 bits (293), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 92/267 (34%), Positives = 138/267 (51%), Gaps = 24/267 (8%)
Query: 341 KLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSE-DLFGV 399
+L AP+ + + PFR +C +GA +T EM + +N ++ + L HS E + V
Sbjct: 11 RLIAAPMAGISDRPFRALCHAMGAGMTVSEM-LSSNPEVWRSDKSRLRMVHSDEPGIRAV 69
Query: 400 QICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEAT 459
QI G PD +A I+ IDINMGCP V K AGS LL P +K I+
Sbjct: 70 QIAGCDPDEMA-AARRINADSGAQIIDINMGCPAKKVNRKMAGSALLQYPDLVKQILSTV 128
Query: 460 SGTVDKPITIKVRTGYF-EGKNRIDSLIADIGT-WGASAVTVHGRTRQQRYSKLADWDYI 517
VD P+T+K+RTG+ E +N ++ IA + G A+T+HGRTR ++ A++D I
Sbjct: 129 VKAVDVPVTLKIRTGWAPEHRNCVE--IAKLAEDCGIQALTIHGRTRACLFNGFAEYDSI 186
Query: 518 YQCARKASDDLQVLGNGDIYSYLDWNKHKS----DCPELASCMIARGALIKPWIFTEIKE 573
A K + + ++ NGDI + HK+ D + MI R A +PWIF EI+
Sbjct: 187 R--AVKQAVSIPIIANGDIT-----DPHKARAVLDYTGADALMIGRAAQGRPWIFREIQ- 238
Query: 574 QRHWDITSGERLNIMK--DFARFGLEH 598
H+ + +GE L + + R +EH
Sbjct: 239 --HY-LDTGELLAPLPLVEVKRLLIEH 262
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 272,518,314
Number of Sequences: 539616
Number of extensions: 12297680
Number of successful extensions: 38880
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 144
Number of HSP's that attempted gapping in prelim test: 38112
Number of HSP's gapped (non-prelim): 524
length of query: 693
length of database: 191,569,459
effective HSP length: 125
effective length of query: 568
effective length of database: 124,117,459
effective search space: 70498716712
effective search space used: 70498716712
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)