RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 005508
         (693 letters)



>d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096
           {Thermotoga maritima [TaxId: 2336]}
          Length = 305

 Score =  120 bits (302), Expect = 7e-31
 Identities = 65/277 (23%), Positives = 112/277 (40%), Gaps = 14/277 (5%)

Query: 341 KLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQ 400
           K+ LAP+    +  FR +    GAD    EM      L        LL     E    VQ
Sbjct: 2   KVGLAPMAGYTDSAFRTLAFEWGADFAFSEMVSAKGFLMNSQKTEELL-PQPHERNVAVQ 60

Query: 401 ICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSCLLTKPMRMKGIIEATS 460
           I G+ P+ L+    ++       +ID+N GCP+  VV +GAG  LL      + I+    
Sbjct: 61  IFGSEPNELSEAARIL--SEKYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELR 118

Query: 461 GTVDKPITIKVRTGYFEGKNRIDSLIADIGTWGASAVTVHGRTRQQRYSKLADWDYIYQC 520
            +V    ++K R G+ + +         +   G   V +H RT  Q ++  A+W  +   
Sbjct: 119 KSVSGKFSVKTRLGWEKNEVEEI--YRILVEEGVDEVFIHTRTVVQSFTGRAEWKALSVL 176

Query: 521 ARKASDDLQVLGNGDIYSYLDWNKHKSDCPELASCMIARGALIKPWIF----TEIKEQRH 576
                  +    +GDI++  D  +   +       ++ARGA+ +PWIF      ++  ++
Sbjct: 177 ----EKRIPTFVSGDIFTPEDAKRAL-EESGCDGLLVARGAIGRPWIFKQIKDFLRSGKY 231

Query: 577 WDITSGERLNIMKDFARFGLEHWGSDKKGVETTRHFL 613
            + +  E L   +      ++  G  K  VE  +   
Sbjct: 232 SEPSREEILRTFERHLELLIKTKGERKAVVEMRKFLA 268


>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus
           lactis, isozyme B [TaxId: 1358]}
          Length = 311

 Score = 49.2 bits (116), Expect = 7e-07
 Identities = 30/208 (14%), Positives = 61/208 (29%), Gaps = 28/208 (13%)

Query: 385 WALLRRHSSEDLFGVQICGAYPDTLARTVELIDQQCTVDFIDINMGCPIDIVVNKGAGSC 444
              L  +  E      + G+           I     V  I++N+ CP         G  
Sbjct: 89  LPWLNENFPELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVK----HGGQA 144

Query: 445 LLTKPMRMKGIIEATSGTVDKPITIKVRTGYFEG--------KNRIDSLIADIGTWGASA 496
             T P     +++A       P+ +K+     +             D L   I T     
Sbjct: 145 FGTDPEVAAALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEAAGADGLTM-INTLMGVR 203

Query: 497 VTVHGR---------TRQQRYSKLADWDYIYQCARKASDDLQVLGNGDIYSYLD-WNKHK 546
             +  R                K      I+Q A+    D+ ++G G + +  D    + 
Sbjct: 204 FDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQD--VDIPIIGMGGVANAQDVLEMYM 261

Query: 547 SDCPELASCMIARGALIKPWIFTEIKEQ 574
           +     ++  +       P++  +I ++
Sbjct: 262 AGA---SAVAVGTANFADPFVCPKIIDK 286


>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 34

 Score = 29.6 bits (67), Expect = 0.072
 Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 3/27 (11%)

Query: 103 LCPEVAKSGDVSSCPYKDKCRFSHDLD 129
           LC      G    CPY  +C F H+ D
Sbjct: 10  LCRTFHTIG---FCPYGPRCHFIHNAD 33



 Score = 25.8 bits (57), Expect = 1.8
 Identities = 8/18 (44%), Positives = 9/18 (50%)

Query: 143 CPFLSSEGPCPYGLACRF 160
           C    + G CPYG  C F
Sbjct: 11  CRTFHTIGFCPYGPRCHF 28


>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 40

 Score = 29.3 bits (66), Expect = 0.12
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 3/27 (11%)

Query: 103 LCPEVAKSGDVSSCPYKDKCRFSHDLD 129
           LC   ++SG    C Y  KC+F+H L 
Sbjct: 11  LCRTYSESG---RCRYGAKCQFAHGLG 34



 Score = 27.0 bits (60), Expect = 0.76
 Identities = 8/18 (44%), Positives = 9/18 (50%)

Query: 143 CPFLSSEGPCPYGLACRF 160
           C   S  G C YG  C+F
Sbjct: 12  CRTYSESGRCRYGAKCQF 29


>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 36

 Score = 28.9 bits (65), Expect = 0.13
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 3/27 (11%)

Query: 103 LCPEVAKSGDVSSCPYKDKCRFSHDLD 129
           LC    +SG   +C Y +KC+F+H   
Sbjct: 8   LCRPFEESG---TCKYGEKCQFAHGFH 31



 Score = 27.4 bits (61), Expect = 0.59
 Identities = 7/18 (38%), Positives = 8/18 (44%)

Query: 143 CPFLSSEGPCPYGLACRF 160
           C      G C YG  C+F
Sbjct: 9   CRPFEESGTCKYGEKCQF 26


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.132    0.401 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,580,328
Number of extensions: 122792
Number of successful extensions: 247
Number of sequences better than 10.0: 1
Number of HSP's gapped: 244
Number of HSP's successfully gapped: 10
Length of query: 693
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 601
Effective length of database: 1,144,436
Effective search space: 687806036
Effective search space used: 687806036
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.6 bits)