Query 005509
Match_columns 693
No_of_seqs 369 out of 2553
Neff 7.7
Searched_HMMs 29240
Date Tue Mar 26 17:53:42 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005509.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2018-2022//hhsearch_pdb/005509hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ygq_A WIF-1, WNT inhibitory f 1.0 1 1 160.6 8.7 162 115-312 143-312 (324)
2 3k6s_B Integrin beta-2; cell r 1.0 1 1 153.1 7.1 140 124-311 434-596 (687)
3 3fcs_B Integrin beta-3; beta p 1.0 1 1 151.4 12.5 135 126-308 447-600 (690)
4 3fcs_B Integrin beta-3; beta p 1.0 1 1 143.2 13.2 164 97-313 451-633 (690)
5 3k6s_B Integrin beta-2; cell r 1.0 1 1 133.2 8.2 132 126-308 483-623 (687)
6 2gy5_A Angiopoietin-1 receptor 1.0 1 1 127.7 8.4 128 139-311 186-323 (423)
7 2vj2_A Jagged-1; signalling, p 1.0 1 1 121.9 6.3 145 97-308 13-169 (169)
8 2gy5_A Angiopoietin-1 receptor 1.0 1 1 119.1 9.3 146 126-311 204-353 (423)
9 4fbr_A Lectin, myxobacterial h 1.0 1 1 115.7 -12.3 141 123-276 36-204 (267)
10 2ygq_A WIF-1, WNT inhibitory f 1.0 1 1 112.5 6.6 119 176-312 154-280 (324)
No 1
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Probab=1.00 E-value=1 Score=160.63 Aligned_cols=162 Identities=27% Similarity=0.590 Sum_probs=121.6
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCEEEECC
Q ss_conf 4765789789999899789566991771799547888744457678899999998981034468--97779985344199
Q 005509 115 VEMIGGKSCKSDCSGQGVCNHELGQCRCFHGFRGKGCSERIHFQCNFPKTPELPYGRWVVSICP--THCDTTRAMCFCGE 192 (693)
Q Consensus 115 ~~~~~~~~C~~~C~~~G~C~~~~G~C~C~~G~~G~~Ce~~~~~~C~~~~~~~~~~g~~~~~~C~--~~C~~~~g~C~C~~ 192 (693)
...|....|+++|+++|+|+. .+.|.|++||+|++|+.. .|.. .|. +.|.. .+.|.|.+
T Consensus 143 ~~~C~~~~C~~~C~~~G~C~~-~~~C~C~~G~~G~~C~~~---~C~~--------------~C~~~G~C~~-~~~C~C~~ 203 (324)
T 2ygq_A 143 FKTCQQAECPGGCRNGGFCNE-RRICECPDGFHGPHCEKA---LCTP--------------RCMNGGLCVT-PGFCICPP 203 (324)
T ss_dssp EEEECCCCCSSCCCSSCEECT-TSCEECCTTEESSSSCEE---SSSS--------------CCCTTCEECS-SCCEECCT
T ss_pred CCCCCCCCCCCCCCCCCEECC-CCEEECCCCCCCCCCCCC---CCCC--------------CCCCCCEECC-CCEEECCC
T ss_conf 542667889988999799899-996789999808988898---7788--------------8899899869-99785799
Q ss_pred CCCCCCCCCCCCCCCCC-CCCCC---CCCCCCCCCCCCCCCC-CCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 94159999988778755-69999---9999888976777787-6578999992425996310123663354211289997
Q 005509 193 GTKYPNRPVAEACGFQV-NLPSQ---PGAPKSTDWAKADLDN-IFTTNGSKPGWCNVDPEEAYALKVQFKEECDCKYDGL 267 (693)
Q Consensus 193 G~~G~~C~~~~~C~~~~-~~~~~---~~~~c~~gw~g~~c~~-~~~~~C~~~G~C~~~~~~~~~~~~~~~g~C~C~~~G~ 267 (693)
||+|.+|+... |...+ +...| ..|.|..||.|..|+. ....+|.++|.|.. .++|.|. +||
T Consensus 204 G~~G~~C~~~~-C~~~C~~~G~C~~~~~C~C~~G~~G~~C~~~~C~~~C~~~g~C~~------------~~~C~C~-~G~ 269 (324)
T 2ygq_A 204 GFYGVNCDKAN-CSTTCFNGGTCFYPGKCICPPGLEGEQCEISKCPQPCRNGGKCIG------------KSKCKCS-KGY 269 (324)
T ss_dssp TCBTTTTCBCC-CSSCCCSSCCBSCSSCBCCCTTCCTTTTC---------------------------------------
T ss_pred CCCCCCCCCCC-CCCCCCCCCEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCEECC------------CCEEECC-CCC
T ss_conf 96588856686-788789987618998466899860788775867786789799799------------9988899-997
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEE-CCEEECCCCCCCCCCCCCCCC
Q ss_conf 676544346886578999995430-980003999546999998657
Q 005509 268 LGQFCEVPVSSTCVNQCSGHGHCR-GGFCQCDSGWYGVDCSIPSVM 312 (693)
Q Consensus 268 ~G~~C~~~~~~~C~~~C~~~G~C~-~g~C~C~~G~~G~~Cs~~~~~ 312 (693)
+|..|+.. .|..+|.++|+|+ .+.|.|.+||+|.+|++....
T Consensus 270 ~G~~C~~~---~C~~~C~~~g~C~~~~~C~C~~G~~G~~C~~~~~~ 312 (324)
T 2ygq_A 270 QGDLCSKP---VCEPGCGAHGTCHEPNKCQCQEGWHGRHCNKRYEA 312 (324)
T ss_dssp ----------------------------------------------
T ss_pred CCCCCCCC---CCCCCCCCCCEECCCCEEECCCCCCCCCCCCCCCC
T ss_conf 38877578---78898999899799998688998847888888866
No 2
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=1.00 E-value=1 Score=153.11 Aligned_cols=140 Identities=29% Similarity=0.652 Sum_probs=94.0
Q ss_pred CCCCCCCCEEECCCCEEEECCCCCCCCCCCCCC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC----
Q ss_conf 999989978956699177179954788874445--------76788999999989810344689777998534419----
Q 005509 124 KSDCSGQGVCNHELGQCRCFHGFRGKGCSERIH--------FQCNFPKTPELPYGRWVVSICPTHCDTTRAMCFCG---- 191 (693)
Q Consensus 124 ~~~C~~~G~C~~~~G~C~C~~G~~G~~Ce~~~~--------~~C~~~~~~~~~~g~~~~~~C~~~C~~~~g~C~C~---- 191 (693)
+..|+++|+|. .|.|.|++||+|..|+.... ..|.... ....|.++..+..|.|.|.
T Consensus 434 s~~Cs~~G~C~--~g~C~C~~Gy~G~~Cec~~~~~~~~~~~~~C~~~~---------~~~~Cs~~G~C~~G~C~C~~~~~ 502 (687)
T 3k6s_B 434 RSLCHGKGFLE--CGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDN---------NSIICSGLGDCVCGQCLCHTSDV 502 (687)
T ss_dssp SSTGGGSEEES--SSSEEECSSEESTTSCEESSSCCCSGGGSTTSSST---------TSCGGGSSEEEETTEEEECCCCS
T ss_pred CCCCCCCCEEE--CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------CCCCCCCCCEEECCEEECCCCCC
T ss_conf 98789999884--99868699971884434677677554677788999---------99867999888699877588778
Q ss_pred --CCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf --994159999988-77875569999999988897677778765789999--9242599631012366335421128999
Q 005509 192 --EGTKYPNRPVAE-ACGFQVNLPSQPGAPKSTDWAKADLDNIFTTNGSK--PGWCNVDPEEAYALKVQFKEECDCKYDG 266 (693)
Q Consensus 192 --~G~~G~~C~~~~-~C~~~~~~~~~~~~~c~~gw~g~~c~~~~~~~C~~--~G~C~~~~~~~~~~~~~~~g~C~C~~~G 266 (693)
+||+|..|+... .|. ......|.+ +|.| ..++|.|. +|
T Consensus 503 ~~~G~~G~~Ce~~~~~C~-----------------------~~~~~~C~~~~~G~C-------------~~g~C~C~-~G 545 (687)
T 3k6s_B 503 PGKLIYGQYCECDTINCE-----------------------RYNGQVCGGPGRGLC-------------FCGKCRCH-PG 545 (687)
T ss_dssp TTCCEESTTSCEESSCSC-----------------------EETTEETSHHHHEEE-------------ETTEEEEC-TT
T ss_pred CCCCCCCCCCCCCCCCCC-----------------------CCCCCCCCCCCCCEE-------------ECCEEECC-CC
T ss_conf 888821565124666455-----------------------889867678889748-------------79998769-99
Q ss_pred CCCCCCCCCC-CCCCCC----CCCCCCEEECCEEECCCCCCCCCCCC-CCC
Q ss_conf 7676544346-886578----99999543098000399954699999-865
Q 005509 267 LLGQFCEVPV-SSTCVN----QCSGHGHCRGGFCQCDSGWYGVDCSI-PSV 311 (693)
Q Consensus 267 ~~G~~C~~~~-~~~C~~----~C~~~G~C~~g~C~C~~G~~G~~Cs~-~~~ 311 (693)
|+|..|+... ...|.. .|+++|+|+.|.|.|.+||+|..|++ +.+
T Consensus 546 ~~G~~Cec~~~~~~C~~~~g~~Cs~~G~C~~g~C~C~~Gy~G~~Ce~c~~C 596 (687)
T 3k6s_B 546 FEGSACQCERTTEGCLNPRRVECSGRGRCRCNVCECHSGYQLPLCQECPGC 596 (687)
T ss_dssp CCSTTSCSCCSSCTTBCTTCSBTSSSCCBCSSCBCCSTTCCTTTTCCCTTS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
T ss_conf 737887657887887798988889998698898787999848888989988
No 3
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=1.00 E-value=1 Score=151.45 Aligned_cols=135 Identities=27% Similarity=0.620 Sum_probs=73.9
Q ss_pred CCC-CCCEEECCCCEEEECCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC----CC
Q ss_conf 998-997895669917717995478887444-------576788999999989810344689777998534419----99
Q 005509 126 DCS-GQGVCNHELGQCRCFHGFRGKGCSERI-------HFQCNFPKTPELPYGRWVVSICPTHCDTTRAMCFCG----EG 193 (693)
Q Consensus 126 ~C~-~~G~C~~~~G~C~C~~G~~G~~Ce~~~-------~~~C~~~~~~~~~~g~~~~~~C~~~C~~~~g~C~C~----~G 193 (693)
.|+ ++|.|. .|.|.|++||+|..|+... .++|.... ....|.+++.+..|.|.|. +|
T Consensus 447 ~C~~g~G~~~--~G~C~C~~Gy~G~~Ce~~~~~~~~~~~~~C~~~~---------~~~~Cs~~G~C~~g~C~C~~~~~~G 515 (690)
T 3fcs_B 447 RCNNGNGTFE--CGVCRCGPGWLGSQCECSEEDYRPSQQDECSPRE---------GQPVCSQRGECLCGQCVCHSSDFGK 515 (690)
T ss_dssp TTTTTSEEEE--TTEEEECTTCCSSSSCCSCC------CCCCSSSS---------SSCGGGGSEEECSSSEEECCCSSCC
T ss_pred CCCCCCCEEE--CCCEEECCCCCCCCEEECCCCCCCCCCCCCCCCC---------CCCCCCCCCEEECCEEEEECCCCCC
T ss_conf 3209999686--8916829884278602025766776677677878---------8987799988879835711578998
Q ss_pred CCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4159999988-778755699999999888976777787657899999242599631012366335421128999767654
Q 005509 194 TKYPNRPVAE-ACGFQVNLPSQPGAPKSTDWAKADLDNIFTTNGSKPGWCNVDPEEAYALKVQFKEECDCKYDGLLGQFC 272 (693)
Q Consensus 194 ~~G~~C~~~~-~C~~~~~~~~~~~~~c~~gw~g~~c~~~~~~~C~~~G~C~~~~~~~~~~~~~~~g~C~C~~~G~~G~~C 272 (693)
|+|..|+... .|.. .....|.++|.|. .++|.|. +||+|..|
T Consensus 516 y~G~~Ce~~~~~C~~-----------------------~~~~~C~~~G~C~-------------~g~C~C~-~Gy~G~~C 558 (690)
T 3fcs_B 516 ITGKYCECDDFSCVR-----------------------YKGEMCSGHGQCS-------------CGDCLCD-SDWTGYYC 558 (690)
T ss_dssp CBSTTSCBCSSCCCB-----------------------SSSSBGGGSEEEE-------------TTEEEEC-TTEESSSS
T ss_pred EECCCCCCCCCCCCC-----------------------CCCCCCCCCCEEC-------------CCEEECC-CCCCCCCC
T ss_conf 037986745675767-----------------------8997889989855-------------8862796-89828887
Q ss_pred CCC-CCCCCC----CCCCCCCEEECCEEEC-CCCCCCCCCCC
Q ss_conf 434-688657----8999995430980003-99954699999
Q 005509 273 EVP-VSSTCV----NQCSGHGHCRGGFCQC-DSGWYGVDCSI 308 (693)
Q Consensus 273 ~~~-~~~~C~----~~C~~~G~C~~g~C~C-~~G~~G~~Cs~ 308 (693)
+.+ ....|. .+|+++|+|+.+.|.| .+||+|..|++
T Consensus 559 eC~~~~~~C~~~~g~~C~~~G~C~~g~C~C~~~Gy~G~~Ce~ 600 (690)
T 3fcs_B 559 NCTTRTDTCMSSNGLLCSGRGKCECGSCVCIQPGSYGDTCEK 600 (690)
T ss_dssp CEECCCTTTBCTTSSBTSSSCEEETTEEECCSTTCBSTTSCB
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCEEECCCCCCCCCCCCC
T ss_conf 667888856589999899998770898877899832887676
No 4
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=1.00 E-value=1 Score=143.19 Aligned_cols=164 Identities=22% Similarity=0.349 Sum_probs=113.1
Q ss_pred CCCCCC---CCCCCCCCCCCCCCCC------CCCCCC-----CCCCCCCEEECCCCEEEEC----CCCCCCCCCCCCCCC
Q ss_conf 568610---0577885224324765------789789-----9998997895669917717----995478887444576
Q 005509 97 EIGRWL---SGCDSVAKEVDLVEMI------GGKSCK-----SDCSGQGVCNHELGQCRCF----HGFRGKGCSERIHFQ 158 (693)
Q Consensus 97 ~~g~~~---~~c~~~~~~~~~~~~~------~~~~C~-----~~C~~~G~C~~~~G~C~C~----~G~~G~~Ce~~~~~~ 158 (693)
..|.+. +.|..++.+..+.... ....|. ..|+++|+|. .|+|.|+ +||+|..||.. ...
T Consensus 451 g~G~~~~G~C~C~~Gy~G~~Ce~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~--~g~C~C~~~~~~Gy~G~~Ce~~-~~~ 527 (690)
T 3fcs_B 451 GNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECL--CGQCVCHSSDFGKITGKYCECD-DFS 527 (690)
T ss_dssp TSEEEETTEEEECTTCCSSSSCCSCC------CCCCSSSSSSCGGGGSEEEC--SSSEEECCCSSCCCBSTTSCBC-SSC
T ss_pred CCCEEECCCEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEE--CCEEEEECCCCCCEECCCCCCC-CCC
T ss_conf 9996868916829884278602025766776677677878898779998887--9835711578998037986745-675
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 78899999998981034468977799853441999415999998877875569999999988897677778765789999
Q 005509 159 CNFPKTPELPYGRWVVSICPTHCDTTRAMCFCGEGTKYPNRPVAEACGFQVNLPSQPGAPKSTDWAKADLDNIFTTNGSK 238 (693)
Q Consensus 159 C~~~~~~~~~~g~~~~~~C~~~C~~~~g~C~C~~G~~G~~C~~~~~C~~~~~~~~~~~~~c~~gw~g~~c~~~~~~~C~~ 238 (693)
|.... +..|.+++.+..+.|.|.+||+|..|+... ... .|......+|.+
T Consensus 528 C~~~~----------~~~C~~~G~C~~g~C~C~~Gy~G~~CeC~~------~~~--------------~C~~~~g~~C~~ 577 (690)
T 3fcs_B 528 CVRYK----------GEMCSGHGQCSCGDCLCDSDWTGYYCNCTT------RTD--------------TCMSSNGLLCSG 577 (690)
T ss_dssp CCBSS----------SSBGGGSEEEETTEEEECTTEESSSSCEEC------CCT--------------TTBCTTSSBTSS
T ss_pred CCCCC----------CCCCCCCCEECCCEEECCCCCCCCCCCCCC------CCC--------------CCCCCCCCCCCC
T ss_conf 76789----------978899898558862796898288876678------888--------------565899998999
Q ss_pred CCEECCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCEEECCCCCCCCCCCCCCCCC
Q ss_conf 924259963101236633542112-899976765443468865789999954309800039995469999986579
Q 005509 239 PGWCNVDPEEAYALKVQFKEECDC-KYDGLLGQFCEVPVSSTCVNQCSGHGHCRGGFCQCDSGWYGVDCSIPSVMS 313 (693)
Q Consensus 239 ~G~C~~~~~~~~~~~~~~~g~C~C-~~~G~~G~~C~~~~~~~C~~~C~~~G~C~~g~C~C~~G~~G~~Cs~~~~~~ 313 (693)
+|.|. .++|.| . +||+|..|+.. ..|+++|.++|+|+. |..||+|..|+...+..
T Consensus 578 ~G~C~-------------~g~C~C~~-~Gy~G~~Ce~C--~~C~~~C~~~g~Cv~----C~~g~tG~~C~~~~C~~ 633 (690)
T 3fcs_B 578 RGKCE-------------CGSCVCIQ-PGSYGDTCEKC--PTCPDACTFKKECVE----CKKFDRGALHDENTCNR 633 (690)
T ss_dssp SCEEE-------------TTEEECCS-TTCBSTTSCBC--TTSCCTTTSCCGGGT----TTTTCCSSSSSSSCSTT
T ss_pred CCEEE-------------CCEEECCC-CCCCCCCCCCC--CCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCC
T ss_conf 98770-------------89887789-98328876768--888888889987423----88987568877462343
No 5
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=1.00 E-value=1 Score=133.24 Aligned_cols=132 Identities=24% Similarity=0.462 Sum_probs=92.7
Q ss_pred CCCCCCEEECCCCEEEEC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCEEEECCCCCCC
Q ss_conf 998997895669917717------995478887444576788999999989810344689--777998534419994159
Q 005509 126 DCSGQGVCNHELGQCRCF------HGFRGKGCSERIHFQCNFPKTPELPYGRWVVSICPT--HCDTTRAMCFCGEGTKYP 197 (693)
Q Consensus 126 ~C~~~G~C~~~~G~C~C~------~G~~G~~Ce~~~~~~C~~~~~~~~~~g~~~~~~C~~--~C~~~~g~C~C~~G~~G~ 197 (693)
.|+++|+|. .|+|.|+ +||+|..|+.. ...|... .+..|.+ +..+..|.|.|.+||+|.
T Consensus 483 ~Cs~~G~C~--~G~C~C~~~~~~~~G~~G~~Ce~~-~~~C~~~----------~~~~C~~~~~G~C~~g~C~C~~G~~G~ 549 (687)
T 3k6s_B 483 ICSGLGDCV--CGQCLCHTSDVPGKLIYGQYCECD-TINCERY----------NGQVCGGPGRGLCFCGKCRCHPGFEGS 549 (687)
T ss_dssp GGGSSEEEE--TTEEEECCCCSTTCCEESTTSCEE-SSCSCEE----------TTEETSHHHHEEEETTEEEECTTCCST
T ss_pred CCCCCCEEE--CCEEECCCCCCCCCCCCCCCCCCC-CCCCCCC----------CCCCCCCCCCCEEECCEEECCCCCCCC
T ss_conf 679998886--998775887788888215651246-6645588----------986767888974879998769997378
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99998877875569999999988897677778765789999924259963101236633542112899976765443468
Q 005509 198 NRPVAEACGFQVNLPSQPGAPKSTDWAKADLDNIFTTNGSKPGWCNVDPEEAYALKVQFKEECDCKYDGLLGQFCEVPVS 277 (693)
Q Consensus 198 ~C~~~~~C~~~~~~~~~~~~~c~~gw~g~~c~~~~~~~C~~~G~C~~~~~~~~~~~~~~~g~C~C~~~G~~G~~C~~~~~ 277 (693)
.|+.... .. .|.......|+++|.|. .++|.|. +||+|..|++.
T Consensus 550 ~Cec~~~------~~--------------~C~~~~g~~Cs~~G~C~-------------~g~C~C~-~Gy~G~~Ce~c-- 593 (687)
T 3k6s_B 550 ACQCERT------TE--------------GCLNPRRVECSGRGRCR-------------CNVCECH-SGYQLPLCQEC-- 593 (687)
T ss_dssp TSCSCCS------SC--------------TTBCTTCSBTSSSCCBC-------------SSCBCCS-TTCCTTTTCCC--
T ss_pred CCCCCCC------CC--------------CCCCCCCCCCCCCCCCC-------------CCEEECC-CCCCCCCCCCC--
T ss_conf 8765788------78--------------87798988889998698-------------8987879-99848888989--
Q ss_pred CCCCCCCCCCCEEECCEEEC-CCCCCCCCCCC
Q ss_conf 86578999995430980003-99954699999
Q 005509 278 STCVNQCSGHGHCRGGFCQC-DSGWYGVDCSI 308 (693)
Q Consensus 278 ~~C~~~C~~~G~C~~g~C~C-~~G~~G~~Cs~ 308 (693)
..|+++|.++|.|+ .|.| ..|..+..|+.
T Consensus 594 ~~C~~~C~~~g~Cv--~C~~~~~G~~~~~C~~ 623 (687)
T 3k6s_B 594 PGCPSPCGKYISCA--ECLKFEKGPFGKNCSA 623 (687)
T ss_dssp TTSCCCCTTTHHHH--TTTTSCSCCCSSCSSS
T ss_pred CCCCCCCCCCCCCC--CCCCCCCCCCCCCCCC
T ss_conf 98876567988778--4547779998765100
No 6
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Probab=1.00 E-value=1 Score=127.74 Aligned_cols=128 Identities=20% Similarity=0.399 Sum_probs=81.4
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 17717995478887444576788999999989810344689777998534419994159999988778755699999999
Q 005509 139 QCRCFHGFRGKGCSERIHFQCNFPKTPELPYGRWVVSICPTHCDTTRAMCFCGEGTKYPNRPVAEACGFQVNLPSQPGAP 218 (693)
Q Consensus 139 ~C~C~~G~~G~~Ce~~~~~~C~~~~~~~~~~g~~~~~~C~~~C~~~~g~C~C~~G~~G~~C~~~~~C~~~~~~~~~~~~~ 218 (693)
.|.|++||.|+.|+.. ..+|.. .+.|+...+.|.|++||+|.+|+..
T Consensus 186 ~c~C~~g~~G~~C~~~-C~~C~~----------------~G~C~~~~g~C~C~~G~~G~~Ce~~---------------- 232 (423)
T 2gy5_A 186 VRRCEAQKWGPECNHL-CTACMN----------------NGVCHEDTGECICPPGFMGRTCEKA---------------- 232 (423)
T ss_dssp ECSSCTTEESTTSCEE-CCCCCT----------------TCEECTTTCCEECCTTEESTTSCEE----------------
T ss_pred CCCCCCCCCCCCCCCC-CCCCCC----------------CCEEECCCCCEECCCCCCCCCCCCC----------------
T ss_conf 7758778878887788-988899----------------9988799983729989537870132----------------
Q ss_pred CCCCCCCCCCCCCC--CCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CC----CCCC--CCCCCCCE
Q ss_conf 88897677778765--7899999242599631012366335421128999767654434-68----8657--89999954
Q 005509 219 KSTDWAKADLDNIF--TTNGSKPGWCNVDPEEAYALKVQFKEECDCKYDGLLGQFCEVP-VS----STCV--NQCSGHGH 289 (693)
Q Consensus 219 c~~gw~g~~c~~~~--~~~C~~~G~C~~~~~~~~~~~~~~~g~C~C~~~G~~G~~C~~~-~~----~~C~--~~C~~~G~ 289 (693)
|..++.|..|.... ...|.+++.|... .++|.|. +||+|..|+.. .. ..|. -+|.++|+
T Consensus 233 C~~g~~g~~C~~~C~~~~~C~~~g~C~~~-----------~~~C~C~-~G~~G~~C~~~C~~G~~G~~C~~~C~C~ngg~ 300 (423)
T 2gy5_A 233 CELHTFGRTCKERCSGQEGCKSYVFCLPD-----------PYGCSCA-TGWKGLQCNEACHPGFYGPDCKLRCSCNNGEM 300 (423)
T ss_dssp CCTTEESTTSCEECCSTTTTTTCCEEETT-----------TTEEECC-BTCBSGGGCBCCCTTBCSBTTCCBCCCTTCCE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEECCC-----------CCEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 68998799767607999987898778889-----------9827858-99654663575689875885566503799887
Q ss_pred EE-CCEEECCCCCCCCCCCCCCC
Q ss_conf 30-98000399954699999865
Q 005509 290 CR-GGFCQCDSGWYGVDCSIPSV 311 (693)
Q Consensus 290 C~-~g~C~C~~G~~G~~Cs~~~~ 311 (693)
|+ ...|.|.+||+|.+|++...
T Consensus 301 C~~~~~C~C~~G~~G~~Ce~~~~ 323 (423)
T 2gy5_A 301 CDRFQGCLCSPGWQGLQCEREGI 323 (423)
T ss_dssp EETTTEEECCTTCBSTTSCBCSS
T ss_pred ECCCCCEECCCCCCCCCCCCCCC
T ss_conf 05998139899985888765766
No 7
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A
Probab=1.00 E-value=1 Score=121.87 Aligned_cols=145 Identities=26% Similarity=0.542 Sum_probs=102.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5686100577885224324765789789--99989978956699177179954788874445767889999999898103
Q 005509 97 EIGRWLSGCDSVAKEVDLVEMIGGKSCK--SDCSGQGVCNHELGQCRCFHGFRGKGCSERIHFQCNFPKTPELPYGRWVV 174 (693)
Q Consensus 97 ~~g~~~~~c~~~~~~~~~~~~~~~~~C~--~~C~~~G~C~~~~G~C~C~~G~~G~~Ce~~~~~~C~~~~~~~~~~g~~~~ 174 (693)
....+...|+.++.+..+. ..|. .+|.++|+|+. +|+|.|++||+|..|+.. .|..
T Consensus 13 ~~~~~~c~C~~g~~G~~C~-----~~C~~~~~c~~~g~C~~-~g~C~C~~G~~G~~C~~~---~C~~------------- 70 (169)
T 2vj2_A 13 IEGRSAVTCDDYYYGFGCN-----KFCRPRDDFFGHYACDQ-NGNKTCMEGWMGPECNRA---ICRQ------------- 70 (169)
T ss_dssp --------CCTTEETTTTC-----EECCCEEETTEEEEECS-SCCEEECTTEESTTSCEE---CCCT-------------
T ss_pred CCCCEEEECCCCCCCCCCC-----CCCCCCCCCCCCCEECC-CCEEECCCCCCCCCCCCC---CCCC-------------
T ss_conf 1157462689869378825-----43689887678888089-984479998828987778---7889-------------
Q ss_pred CCCC---CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCC
Q ss_conf 4468---9777998534419994159999988778755699999999888976777787657899999242599631012
Q 005509 175 SICP---THCDTTRAMCFCGEGTKYPNRPVAEACGFQVNLPSQPGAPKSTDWAKADLDNIFTTNGSKPGWCNVDPEEAYA 251 (693)
Q Consensus 175 ~~C~---~~C~~~~g~C~C~~G~~G~~C~~~~~C~~~~~~~~~~~~~c~~gw~g~~c~~~~~~~C~~~G~C~~~~~~~~~ 251 (693)
.|. +.|.. .+.|.|.+||+|..|+.+ . . ...|. +|.|..
T Consensus 71 -~C~~~~g~C~~-~~~C~C~~G~~G~~C~~C---~---~----------------------~~~C~-~g~C~~------- 112 (169)
T 2vj2_A 71 -GCSPKHGSCKL-PGDCRCQYGWQGLYCDKC---I---P----------------------HPGCV-HGICNE------- 112 (169)
T ss_dssp -TCCTTTEECSS-TTCCEECTTEESSSSCEE---C---C----------------------CTTCS-SEECSS-------
T ss_pred -CCCCCCCCCCC-CCEEECCCCCCCCCCCCC---C---C----------------------CCCCC-CCCCCC-------
T ss_conf -88788853389-986679999879875567---8---8----------------------88888-899289-------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCEEEC-----CEEECCCCCCCCCCCC
Q ss_conf 366335421128999767654434688657--89999954309-----8000399954699999
Q 005509 252 LKVQFKEECDCKYDGLLGQFCEVPVSSTCV--NQCSGHGHCRG-----GFCQCDSGWYGVDCSI 308 (693)
Q Consensus 252 ~~~~~~g~C~C~~~G~~G~~C~~~~~~~C~--~~C~~~G~C~~-----g~C~C~~G~~G~~Cs~ 308 (693)
.++|.|. +||+|..|++. ...|. ++|.++|+|+. +.|.|.+||+|.+|++
T Consensus 113 -----~~~C~C~-~G~~G~~C~~~-~~~C~~~~~C~~~g~C~~~~~~~~~C~C~~G~~G~~Ce~ 169 (169)
T 2vj2_A 113 -----PWQCLCE-TNWGGQLCDKD-LNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCEI 169 (169)
T ss_dssp -----TTCCEEC-TTEETTTTCEE-SCHHHHTCCCCTTCEEEECSTTCEEEECCTTCCSTTSCC
T ss_pred -----CCEEECC-CCCCCCCCCCC-CCCCCCCCCCCCCCEECCCCCCCCEEECCCCCCCCCCCC
T ss_conf -----9978599-99988855477-877889888899998758999883848999793768687
No 8
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Probab=1.00 E-value=1 Score=119.11 Aligned_cols=146 Identities=21% Similarity=0.363 Sum_probs=98.7
Q ss_pred CCCCCCEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCC--CCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf 998997895669917717995478887444576788999999989810-34468--977799853441999415999998
Q 005509 126 DCSGQGVCNHELGQCRCFHGFRGKGCSERIHFQCNFPKTPELPYGRWV-VSICP--THCDTTRAMCFCGEGTKYPNRPVA 202 (693)
Q Consensus 126 ~C~~~G~C~~~~G~C~C~~G~~G~~Ce~~~~~~C~~~~~~~~~~g~~~-~~~C~--~~C~~~~g~C~C~~G~~G~~C~~~ 202 (693)
+|+++|+|+..+|+|.|++||+|.+|+.. |..+.....+...|. ...|. +.|+...+.|.|.+||+|.+|+.
T Consensus 204 ~C~~~G~C~~~~g~C~C~~G~~G~~Ce~~----C~~g~~g~~C~~~C~~~~~C~~~g~C~~~~~~C~C~~G~~G~~C~~- 278 (423)
T 2gy5_A 204 ACMNNGVCHEDTGECICPPGFMGRTCEKA----CELHTFGRTCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNE- 278 (423)
T ss_dssp CCCTTCEECTTTCCEECCTTEESTTSCEE----CCTTEESTTSCEECCSTTTTTTCCEEETTTTEEECCBTCBSGGGCB-
T ss_pred CCCCCCEEECCCCCEECCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEECCCCCCCCCCC-
T ss_conf 88999988799983729989537870132----6899879976760799998789877888998278589965466357-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 87787556999999998889767777876578999992425996310123663354211289997676544346886578
Q 005509 203 EACGFQVNLPSQPGAPKSTDWAKADLDNIFTTNGSKPGWCNVDPEEAYALKVQFKEECDCKYDGLLGQFCEVPVSSTCVN 282 (693)
Q Consensus 203 ~~C~~~~~~~~~~~~~c~~gw~g~~c~~~~~~~C~~~G~C~~~~~~~~~~~~~~~g~C~C~~~G~~G~~C~~~~~~~C~~ 282 (693)
.|..||.|..|+. ..+|.++|.|... ..|.|. +||+|..|+... ++
T Consensus 279 ---------------~C~~G~~G~~C~~--~C~C~ngg~C~~~------------~~C~C~-~G~~G~~Ce~~~---~~- 324 (423)
T 2gy5_A 279 ---------------ACHPGFYGPDCKL--RCSCNNGEMCDRF------------QGCLCS-PGWQGLQCEREG---IP- 324 (423)
T ss_dssp ---------------CCCTTBCSBTTCC--BCCCTTCCEEETT------------TEEECC-TTCBSTTSCBCS---SC-
T ss_pred ---------------CCCCCCCCCCCCC--CCCCCCCCEECCC------------CCEECC-CCCCCCCCCCCC---CC-
T ss_conf ---------------5689875885566--5037998870599------------813989-998588876576---67-
Q ss_pred CCCCCCEE-ECCEEECCCCCCCCCCCCCCC
Q ss_conf 99999543-098000399954699999865
Q 005509 283 QCSGHGHC-RGGFCQCDSGWYGVDCSIPSV 311 (693)
Q Consensus 283 ~C~~~G~C-~~g~C~C~~G~~G~~Cs~~~~ 311 (693)
......+ ..+.|.|.+||+|..|+....
T Consensus 325 -~~~~~~~~~~~~~~c~~g~~g~~C~~~~~ 353 (423)
T 2gy5_A 325 -RMTPKIVDLPDHIEVNSGKFNPICKASGW 353 (423)
T ss_dssp -CCCCEECSCCSBCCEESEEECCEEEEECT
T ss_pred -CCCCCEECCCCEEEECCCCCCCCCCCCCC
T ss_conf -86762104788588589864876313477
No 9
>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*
Probab=1.00 E-value=1 Score=115.74 Aligned_cols=141 Identities=12% Similarity=-0.070 Sum_probs=77.9
Q ss_pred CCCCCCCCCEEECCCC--EEEECCCCCCCCCCCCCCCC------CCCCCCCCC--C-CC-------CCCCCCCC--CCCC
Q ss_conf 8999989978956699--17717995478887444576------788999999--9-89-------81034468--9777
Q 005509 123 CKSDCSGQGVCNHELG--QCRCFHGFRGKGCSERIHFQ------CNFPKTPEL--P-YG-------RWVVSICP--THCD 182 (693)
Q Consensus 123 C~~~C~~~G~C~~~~G--~C~C~~G~~G~~Ce~~~~~~------C~~~~~~~~--~-~g-------~~~~~~C~--~~C~ 182 (693)
+..+|.++|+|....+ .|.|++||+|..||.. +.+ |.+.++..+ + .| .+...+|. +.|.
T Consensus 36 ~~~~c~ngG~C~~g~~~y~C~Cp~Gf~G~~Ce~n-i~ec~~~~~c~s~pC~nggtc~~G~~c~~~~eC~s~pC~ngG~C~ 114 (267)
T 4fbr_A 36 LDIKSDDGGKTLKGTMTYNGEGPIGFRGTLSSAN-NYTVENQWGGTSAPWQPGGVWVLGARDKQNIVAVSIKSNDGGKTL 114 (267)
T ss_dssp EEEECSSTTSEEEEEEEETTSCCEEEEEEECSTT-EEEEEEESSSTTSCEEEEEEEECCCCSSCCEEEEEEECSSTTSEE
T ss_pred CCCCCCCCCEECCCCCCEEEECCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 7777689886048997767759888223510005-542244667678866589730116865656604788778898885
Q ss_pred CCC--CEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCC---CCCCCCCCCCEECCCCCCCCCCCC
Q ss_conf 998--5344199941599999887787556999999998889---76777787---657899999242599631012366
Q 005509 183 TTR--AMCFCGEGTKYPNRPVAEACGFQVNLPSQPGAPKSTD---WAKADLDN---IFTTNGSKPGWCNVDPEEAYALKV 254 (693)
Q Consensus 183 ~~~--g~C~C~~G~~G~~C~~~~~C~~~~~~~~~~~~~c~~g---w~g~~c~~---~~~~~C~~~G~C~~~~~~~~~~~~ 254 (693)
+.. ..|.|+.||+|.+|+...+. ..+...+..++|..+ +.|..|+. ....+|.++|.|....
T Consensus 115 ~~~~sy~C~C~~Gf~G~~Ce~~~d~--C~n~~~c~s~pC~ngg~c~~G~~c~~~i~c~~~~c~ngg~C~dg~-------- 184 (267)
T 4fbr_A 115 TGTTTYNGEGPIGFKSEVTDGDTYS--VENQWGGSAAPWHSGGVWVLGTRGKQNVINVDAKSNDGGKTLSGT-------- 184 (267)
T ss_dssp EEEEEETTSCCEEEEEEECCCCEEE--EEEECSSTTSCCEEEEEEECCSSTTSCEEEEEEECSSTTSEEEEE--------
T ss_pred CCCCCEEEECCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCEEECCC--------
T ss_conf 5886177638887466578897532--234577478466089642546546514506889889998960799--------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3354211289997676544346
Q 005509 255 QFKEECDCKYDGLLGQFCEVPV 276 (693)
Q Consensus 255 ~~~g~C~C~~~G~~G~~C~~~~ 276 (693)
-.++|.|+ +||+|..|+..+
T Consensus 185 -~~y~C~Cp-~Gf~G~~c~~~i 204 (267)
T 4fbr_A 185 -MTYNGEGP-IGFRGTLTSPDT 204 (267)
T ss_dssp -EEETTSCC-EEEEEEEEETTE
T ss_pred -CCEEEECC-CCCCCCCCCCCC
T ss_conf -87677499-983232115565
No 10
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Probab=1.00 E-value=1 Score=112.54 Aligned_cols=119 Identities=27% Similarity=0.537 Sum_probs=86.5
Q ss_pred CCC--CCCCCCCCEEEECCCCCCCCCCCCCCCCCCC-CCCC---CCCCCCCCCCCCCCCCCC-CCCCCCCCCEECCCCCC
Q ss_conf 468--9777998534419994159999988778755-6999---999998889767777876-57899999242599631
Q 005509 176 ICP--THCDTTRAMCFCGEGTKYPNRPVAEACGFQV-NLPS---QPGAPKSTDWAKADLDNI-FTTNGSKPGWCNVDPEE 248 (693)
Q Consensus 176 ~C~--~~C~~~~g~C~C~~G~~G~~C~~~~~C~~~~-~~~~---~~~~~c~~gw~g~~c~~~-~~~~C~~~G~C~~~~~~ 248 (693)
.|. +.|.. .+.|.|.+||+|..|+.. .|...+ +... ...|.|..||.|..|+.. ...+|.++|.|..
T Consensus 154 ~C~~~G~C~~-~~~C~C~~G~~G~~C~~~-~C~~~C~~~G~C~~~~~C~C~~G~~G~~C~~~~C~~~C~~~G~C~~---- 227 (324)
T 2ygq_A 154 GCRNGGFCNE-RRICECPDGFHGPHCEKA-LCTPRCMNGGLCVTPGFCICPPGFYGVNCDKANCSTTCFNGGTCFY---- 227 (324)
T ss_dssp CCCSSCEECT-TSCEECCTTEESSSSCEE-SSSSCCCTTCEECSSCCEECCTTCBTTTTCBCCCSSCCCSSCCBSC----
T ss_pred CCCCCCEECC-CCEEECCCCCCCCCCCCC-CCCCCCCCCCEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCEECC----
T ss_conf 8999799899-996789999808988898-7788889989986999785799965888566867887899876189----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE-CCEEECCCCCCCCCCCCCCCC
Q ss_conf 0123663354211289997676544346886578999995430-980003999546999998657
Q 005509 249 AYALKVQFKEECDCKYDGLLGQFCEVPVSSTCVNQCSGHGHCR-GGFCQCDSGWYGVDCSIPSVM 312 (693)
Q Consensus 249 ~~~~~~~~~g~C~C~~~G~~G~~C~~~~~~~C~~~C~~~G~C~-~g~C~C~~G~~G~~Cs~~~~~ 312 (693)
.++|.|. +||+|..|+.. .|.++|.++|+|+ .+.|.|.+||+|.+|+++.+.
T Consensus 228 --------~~~C~C~-~G~~G~~C~~~---~C~~~C~~~g~C~~~~~C~C~~G~~G~~C~~~~C~ 280 (324)
T 2ygq_A 228 --------PGKCICP-PGLEGEQCEIS---KCPQPCRNGGKCIGKSKCKCSKGYQGDLCSKPVCE 280 (324)
T ss_dssp --------SSCBCCC-TTCCTTTTC----------------------------------------
T ss_pred --------CCEEECC-CCCCCCCCCCC---CCCCCCCCCCEECCCCEEECCCCCCCCCCCCCCCC
T ss_conf --------9846689-98607887758---67786789799799998889999738877578788
Done!