Your job contains 1 sequence.
>005510
MPLRNDDVRFISSPLKIPPFRPEPPVPFFAQTLTKSKNSLSHLIYSLNESTRSTEPFTRK
LQSFAEHLYGKSVRICSTCLSMTGAVDTLVNFPLLCSASLSLNQSSAEFPAQSELSTQLQ
QKAQQPHSVSRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQ
EDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAFRD
GYGKVVNIRRLDEVITSINGWYMERGLFGMVSGVEILSGGIIRLQVAEAEVNNISIRFLD
RKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTG
KVDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQ
IDSIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSR
PIRPKWSGTVGLIFQHSGARDEKGNPIIKDFYSSPLTASGKTNDEMLIAKFESVYTGSGD
QGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGVEIGPARLLLSLSGGHVVGNFSPHEAF
AIGGTNSVRGYEEGAVGSGRSYVVGSGEISFPMLGPVEGVIFSDYGTDLGSGPSVPGGFL
YDWPHVSYAFKVCSLPPPPRLQPYFVYLFCFIR
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 005510
(693 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2183164 - symbol:OEP80 "outer envelope protein... 2248 4.5e-233 1
TAIR|locus:2081423 - symbol:AT3G44160 "AT3G44160" species... 443 8.4e-42 1
TAIR|locus:2102767 - symbol:TOC75-III "translocon at the ... 140 2.3e-12 2
UNIPROTKB|Q74AT3 - symbol:yaeT "Outer membrane protein as... 109 1.2e-05 3
TIGR_CMR|GSU_2268 - symbol:GSU_2268 "outer membrane prote... 109 1.2e-05 3
>TAIR|locus:2183164 [details] [associations]
symbol:OEP80 "outer envelope protein of 80 kDa"
species:3702 "Arabidopsis thaliana" [GO:0003674
"molecular_function" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=IMP] [GO:0019867 "outer membrane" evidence=IEA]
[GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0009536 "plastid" evidence=IDA]
[GO:0016020 "membrane" evidence=IDA] [GO:0009658 "chloroplast
organization" evidence=IMP] [GO:0010207 "photosystem II assembly"
evidence=RCA] InterPro:IPR000184 InterPro:IPR010827 Pfam:PF01103
Pfam:PF07244 GO:GO:0005739 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0016020 GO:GO:0009941 GO:GO:0009658 GO:GO:0009707
eggNOG:COG4775 EMBL:AF296838 EMBL:AF360205 EMBL:AY040053
IPI:IPI00540445 RefSeq:NP_568378.1 UniGene:At.25139
ProteinModelPortal:Q9C5J8 SMR:Q9C5J8 STRING:Q9C5J8 TCDB:1.B.33.2.2
PaxDb:Q9C5J8 PRIDE:Q9C5J8 EnsemblPlants:AT5G19620.1 GeneID:832082
KEGG:ath:AT5G19620 TAIR:At5g19620 HOGENOM:HOG000233123
InParanoid:Q9C5J8 OMA:DYGRTLN PhylomeDB:Q9C5J8
ProtClustDB:CLSN2689797 Genevestigator:Q9C5J8 Uniprot:Q9C5J8
Length = 732
Score = 2248 (796.4 bits), Expect = 4.5e-233, P = 4.5e-233
Identities = 451/643 (70%), Positives = 505/643 (78%)
Query: 33 LTKSKNSLSHLIYSL-NEST---RSTE-PF--TRKLQSFAEHLYGKSVRICSTCLSMTGA 85
L+ ++NSL+ ++ SL N T RS P T+ L S + + GKS I + + T
Sbjct: 43 LSNTRNSLNQMLQSLKNRHTPPPRSVRRPNLPTQMLNSVTQLMIGKSSPISLSLIQSTQF 102
Query: 86 ---------VDTL--VNFPLLCSASLSLNQSSAEFPAQSELSTQLQQKAQQPHSVSRSDE 134
V+T+ ++ PLLC ASLSL + + + T QQK HSVSR+ E
Sbjct: 103 NWSESRDENVETIRGLSSPLLCCASLSLTRPNESTQSVEGKDTVQQQKG---HSVSRNAE 159
Query: 135 ERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCS 194
ERVLISEVLVR KDGEELERKDLE EAL ALKACRANSALT+REVQEDVHRII+SGYFCS
Sbjct: 160 ERVLISEVLVRTKDGEELERKDLEMEALAALKACRANSALTIREVQEDVHRIIESGYFCS 219
Query: 195 CMPVAVDTRDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEV 254
C PVAVDTRDGIRL+FQVEPNQEF GLVCE ANVLP+KF+ +AFRDG+GKV+NI+RL+E
Sbjct: 220 CTPVAVDTRDGIRLMFQVEPNQEFRGLVCENANVLPSKFIHEAFRDGFGKVINIKRLEEA 279
Query: 255 ITSINGWYMERGLFGMVSGVEILSGGIIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPE 314
ITSINGWYMERGLFG+VS ++ LSGGI+RLQVAEAEVNNISIRFLDRKTGEPTKGKT PE
Sbjct: 280 ITSINGWYMERGLFGIVSDIDTLSGGIVRLQVAEAEVNNISIRFLDRKTGEPTKGKTSPE 339
Query: 315 TILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPXX 374
TILRQLTTKKGQVYSMLQGKRDV+TVL MGIMEDVSIIPQPAGD+GKVDLIMN VERP
Sbjct: 340 TILRQLTTKKGQVYSMLQGKRDVDTVLAMGIMEDVSIIPQPAGDSGKVDLIMNCVERPSG 399
Query: 375 XXXXXXXXXXXXXXXXXXXXXXXFAYSHRNVFGRNQKLNISLERGQIDSIFRINYTDPWI 434
FAYSHRN+FGRNQKLN+SLERGQIDSIFRINYTDPWI
Sbjct: 400 GFSAGGGISSGITSGPLSGLIGSFAYSHRNLFGRNQKLNVSLERGQIDSIFRINYTDPWI 459
Query: 435 EGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIF 494
EGDDKRTSR+IMVQNSRTPG VHGNQPDNSSLTIGRVTAG+E+SRP RPKW+GT GLIF
Sbjct: 460 EGDDKRTSRSIMVQNSRTPGNLVHGNQPDNSSLTIGRVTAGVEYSRPFRPKWNGTAGLIF 519
Query: 495 QHSGARDEKGNPIIKDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGL 554
QH+GARDE+GNPIIKDFYSSPLTASGK +DE ++AK ES+YTGSGDQGS+MF FNMEQGL
Sbjct: 520 QHAGARDEQGNPIIKDFYSSPLTASGKPHDETMLAKLESIYTGSGDQGSTMFAFNMEQGL 579
Query: 555 PVWPEWLFFNRVNARARKGVEIGPARXXXXXXXXHVVGNFSPHEAFAIGGTNSVRGYEEX 614
PV PEWL FNRV RARKG+ IGPAR HVVG FSPHEAF IGGTNSVRGYEE
Sbjct: 580 PVLPEWLCFNRVTGRARKGIHIGPARFLFSLSGGHVVGKFSPHEAFVIGGTNSVRGYEEG 639
Query: 615 XXXXXXXXXXXXXEISFPMLGPVEGVIFSDYGTDLGSGPSVPG 657
E+SFP+ GPVEGVIF+DYGTD+GSG +VPG
Sbjct: 640 AVGSGRSYVVGSGELSFPVRGPVEGVIFTDYGTDMGSGSTVPG 682
>TAIR|locus:2081423 [details] [associations]
symbol:AT3G44160 "AT3G44160" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] [GO:0019867 "outer membrane"
evidence=IEA] InterPro:IPR000184 Pfam:PF01103 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0019867 eggNOG:COG4775
EMBL:BT020246 EMBL:BT021139 IPI:IPI00534790 RefSeq:NP_190002.2
UniGene:At.50243 ProteinModelPortal:Q5PP51
EnsemblPlants:AT3G44160.1 GeneID:823537 KEGG:ath:AT3G44160
TAIR:At3g44160 HOGENOM:HOG000006438 InParanoid:Q5PP51 OMA:QKSIHAG
PhylomeDB:Q5PP51 ProtClustDB:CLSN2680886 Genevestigator:Q5PP51
Uniprot:Q5PP51
Length = 362
Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
Identities = 97/262 (37%), Positives = 138/262 (52%)
Query: 402 HRNVFGRNQKLNISLERGQIDSIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQ 461
H N+FG ++KL++S ++G DS + + P E R + +Q+S +P VHG
Sbjct: 51 HPNLFGGSEKLDVSWDKGLYDSNVLVAFRRPRPEW---RPQQCFFIQHSLSPEIGVHGTP 107
Query: 462 PDNSS------LTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGNPIIKDFYSSP 515
DN S + + ++ G++ S P KWS T + F+H ++ G I +D P
Sbjct: 108 VDNFSRSGSGGVNLSKLALGLDLSEPASSKWSSTTSIKFEHVRPINDDGRAITRDLDGFP 167
Query: 516 LTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGVE 575
+T SG T+D M++ K ES + + DQG S F +EQG+PV +WL FNR A KGV
Sbjct: 168 ITCSGNTHDSMVVLKQESRFAKATDQGLSHFSMQIEQGIPVVSKWLIFNRFKFVASKGVR 227
Query: 576 IGPARXXXXXXXXHVVGNFSPHEAFAIGGTNSVRGYEEXXXXXXXXXXXXXXEISFPMLG 635
GPA +VG+ +P++AFAIGG SVRGY E E++ P+
Sbjct: 228 FGPAFLLASLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTELALPLNK 287
Query: 636 PVEGVIFSDYGTDLGSGPSVPG 657
EG IF D GTDLGS VPG
Sbjct: 288 MTEGTIFLDCGTDLGSSRLVPG 309
>TAIR|locus:2102767 [details] [associations]
symbol:TOC75-III "translocon at the outer envelope
membrane of chloroplasts 75-III" species:3702 "Arabidopsis
thaliana" [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0015450
"P-P-bond-hydrolysis-driven protein transmembrane transporter
activity" evidence=IEA] [GO:0010006 "Toc complex" evidence=ISS]
[GO:0009658 "chloroplast organization" evidence=ISS;RCA;IMP]
[GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0045036
"protein targeting to chloroplast" evidence=IDA] [GO:0031359
"integral to chloroplast outer membrane" evidence=IDA] [GO:0048598
"embryonic morphogenesis" evidence=IMP] [GO:0005774 "vacuolar
membrane" evidence=IDA] [GO:0016020 "membrane" evidence=IDA]
[GO:0045037 "protein import into chloroplast stroma" evidence=IMP]
[GO:0048481 "ovule development" evidence=RCA] [GO:0009536 "plastid"
evidence=IDA] InterPro:IPR000184 InterPro:IPR005689
InterPro:IPR010827 Pfam:PF01103 Pfam:PF07244 GO:GO:0005774
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0048598 GO:GO:0009658
eggNOG:COG4775 EMBL:AL096859 GO:GO:0045037 GO:GO:0015450
GO:GO:0031359 EMBL:AY127014 EMBL:BT006358 IPI:IPI00518793
PIR:T12975 RefSeq:NP_190258.1 UniGene:At.3633 UniGene:At.67270
ProteinModelPortal:Q9STE8 SMR:Q9STE8 IntAct:Q9STE8 STRING:Q9STE8
PaxDb:Q9STE8 PRIDE:Q9STE8 EnsemblPlants:AT3G46740.1 GeneID:823827
KEGG:ath:AT3G46740 TAIR:At3g46740 HOGENOM:HOG000029694
InParanoid:Q9STE8 OMA:RDESSHI PhylomeDB:Q9STE8 ProtClustDB:PLN03138
Genevestigator:Q9STE8 GermOnline:AT3G46740 GO:GO:0010006
TIGRFAMs:TIGR00992 Uniprot:Q9STE8
Length = 818
Score = 140 (54.3 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 70/348 (20%), Positives = 135/348 (38%)
Query: 182 DVHRIIDSGYFCSCMPVAVDT--RDGIRLVFQVEPNQEFHGLVCEGAN-VLPTKF---VE 235
D R I+ G P+ +D+ D +L + +++ + +LP V
Sbjct: 252 DRFRCINVGLMVQSKPIEMDSDMTDKEKLEYYRSLEKDYKRRIDRARPCLLPAPVYGEVM 311
Query: 236 DAFRDGYGKVVNIRRLDEVITSINGWYMERGLF-GMVSGVEILSGGIIRLQVAEAEVNNI 294
RD GKV + R L + + WY + G V L+ + +V E ++ +
Sbjct: 312 QMLRD-QGKV-SARLLQRIRDRVQKWYHDEGYACAQVVNFGNLNTKEVVCEVVEGDITQL 369
Query: 295 SIRFLDRKTGEPTKGKTRPETILRQLTT--KKGQVYSMLQGKRDVETVLTMGIMEDVSII 352
I+F D K G +G T+ + R+L ++G V+++ GK+ + + ++G+ ++ +
Sbjct: 370 VIQFQD-KLGNVVEGNTQVPVVRRELPKQLRQGYVFNIEAGKKALSNINSLGLFSNIEVN 428
Query: 353 PQP--AGDTGK-VDLIMNVVERPXXXXXXXXXXXXXXXXXXXXXXXX---XFAYSHRNVF 406
P+P + G V++ + +E+ + HRN+
Sbjct: 429 PRPDEKNEGGIIVEIKLKELEQKSAEVSTEWSIVPGRGGAPTLASFQPGGSVTFEHRNLQ 488
Query: 407 GRNQKLNISLERG-----QIDSIFRINYTDPWIEGDDKRTSRTIMVQ--NSRTPGTHVHG 459
G N+ L S+ Q D F++ Y P+++G +RT NSR G
Sbjct: 489 GLNRSLMGSVTTSNFLNPQDDLSFKLEYVHPYLDGVYNPRNRTFKTSCFNSRKLSPVFTG 548
Query: 460 NQ--PDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGN 505
+ + + R + + T GL+ + RDE +
Sbjct: 549 GPGVEEVPPIWVDRAGVKANITENFTRQSKFTYGLVMEEITTRDESSH 596
Score = 112 (44.5 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 42/158 (26%), Positives = 61/158 (38%)
Query: 515 PLTASGKTNDEML-----IAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNAR 569
P T SG D M I + + + G VF ++QGL + ++ FFNR
Sbjct: 616 PTTLSGTGVDRMAFLQANITRDNTKFVNGAVVGQRT-VFQVDQGLGIGSKFPFFNRHQLT 674
Query: 570 ARKGVEI-----GPARXXXXXXXXH-----VVGNFSPHEAFAIGGTNSVRGYEEXXXXXX 619
K +++ G + H VG+ ++AF +GG SVRGY
Sbjct: 675 MTKFIQLREVEQGAGKSPPPVLVLHGHYGGCVGDLPSYDAFVLGGPYSVRGYNMGELGAA 734
Query: 620 XXXXXXXXEISFPMLGPVEGVIFSDYGTDLGSGPSVPG 657
EI P+ F ++G DLGS V G
Sbjct: 735 RNIAEVGAEIRIPVKN-THVYAFVEHGNDLGSSKDVKG 771
Score = 66 (28.3 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 296 IRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSII--P 353
I F DR+ + T G ++ ++ + G VY+ Q ++++ET+ T G+ E V +
Sbjct: 175 IMFFDRRR-QTTIGTE--DSFFEMVSIRPGGVYTKAQLQKELETLATCGMFEKVDLEGKT 231
Query: 354 QPAGDTG 360
+P G G
Sbjct: 232 KPDGTLG 238
>UNIPROTKB|Q74AT3 [details] [associations]
symbol:yaeT "Outer membrane protein assembly factor BamA"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01430 InterPro:IPR000184 InterPro:IPR010827
Pfam:PF01103 Pfam:PF07244 GO:GO:0016021 GO:GO:0005886 GO:GO:0009279
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0051205 KO:K07277
GO:GO:0043165 InterPro:IPR023707 PIRSF:PIRSF006076
TIGRFAMs:TIGR03303 OMA:IEPRITR RefSeq:NP_953317.1
ProteinModelPortal:Q74AT3 GeneID:2687454 KEGG:gsu:GSU2268
PATRIC:22027391 HOGENOM:HOG000017982 ProtClustDB:CLSK828786
BioCyc:GSUL243231:GH27-2244-MONOMER Uniprot:Q74AT3
Length = 765
Score = 109 (43.4 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 38/165 (23%), Positives = 63/165 (38%)
Query: 310 KTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVV 369
KTR + I R+L +G+ YS K+ + ++ +G E+ +I K+D+ + V
Sbjct: 363 KTRDKVIRRELKVAEGETYSSTGLKQSKQRLMNLGFFEEAAISTVKGSAENKLDVNIEVK 422
Query: 370 ERPXXXXXXXXXXXXXXXXXXXXXXXXXFAYSHRNVFGRNQKLNISLERGQIDSIFRINY 429
E+P + S N G + N++ G S F +
Sbjct: 423 EKPTGTFSIGAGYSSLDGLIGQG------SVSQGNFLGLGLRANLAASIGGKSSTFNLGL 476
Query: 430 TDP------W-IEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSL 467
TDP W + GD RT R + R G + P + +L
Sbjct: 477 TDPYFLDTRWTLGGDLYRTERDYLDFTRRATGGDIKAGYPLSDTL 521
Score = 75 (31.5 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 38/164 (23%), Positives = 62/164 (37%)
Query: 157 LETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEPNQ 216
+ET A+T + + L +V DV + G F G+ LV+ V+
Sbjct: 40 VETAAITNALSLKTGDLLYAEKVDADVRAVYKLGQFIDVRAETEQGDGGVVLVYTVQEKP 99
Query: 217 EFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLF--GMVSGV 274
+ EG L T V DA + + + L + Y + G + + +
Sbjct: 100 IIREVRIEGNKELSTDKVRDALGLKANTIFSQKELTLAGKRVKKLYGDEGYYLAEVTTRS 159
Query: 275 EILSGGIIRLQVAEAEVNNI---SIRFLDRKTGEPTKGKTRPET 315
E S +R+ V+ AE + SIRF K +K + ET
Sbjct: 160 EKRSDTDVRVIVSVAEGEKVLIKSIRFEGNKAFNASKLRGVMET 203
Score = 46 (21.3 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 593 NFSPHEAFAIGGTNSVRGYE 612
+ S E F GG N++RG+E
Sbjct: 625 DISIDERFFAGGINTLRGFE 644
>TIGR_CMR|GSU_2268 [details] [associations]
symbol:GSU_2268 "outer membrane protein, putative"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0009279 "cell outer membrane" evidence=ISS]
HAMAP:MF_01430 InterPro:IPR000184 InterPro:IPR010827 Pfam:PF01103
Pfam:PF07244 GO:GO:0016021 GO:GO:0005886 GO:GO:0009279
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0051205 KO:K07277
GO:GO:0043165 InterPro:IPR023707 PIRSF:PIRSF006076
TIGRFAMs:TIGR03303 OMA:IEPRITR RefSeq:NP_953317.1
ProteinModelPortal:Q74AT3 GeneID:2687454 KEGG:gsu:GSU2268
PATRIC:22027391 HOGENOM:HOG000017982 ProtClustDB:CLSK828786
BioCyc:GSUL243231:GH27-2244-MONOMER Uniprot:Q74AT3
Length = 765
Score = 109 (43.4 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 38/165 (23%), Positives = 63/165 (38%)
Query: 310 KTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVV 369
KTR + I R+L +G+ YS K+ + ++ +G E+ +I K+D+ + V
Sbjct: 363 KTRDKVIRRELKVAEGETYSSTGLKQSKQRLMNLGFFEEAAISTVKGSAENKLDVNIEVK 422
Query: 370 ERPXXXXXXXXXXXXXXXXXXXXXXXXXFAYSHRNVFGRNQKLNISLERGQIDSIFRINY 429
E+P + S N G + N++ G S F +
Sbjct: 423 EKPTGTFSIGAGYSSLDGLIGQG------SVSQGNFLGLGLRANLAASIGGKSSTFNLGL 476
Query: 430 TDP------W-IEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSL 467
TDP W + GD RT R + R G + P + +L
Sbjct: 477 TDPYFLDTRWTLGGDLYRTERDYLDFTRRATGGDIKAGYPLSDTL 521
Score = 75 (31.5 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 38/164 (23%), Positives = 62/164 (37%)
Query: 157 LETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEPNQ 216
+ET A+T + + L +V DV + G F G+ LV+ V+
Sbjct: 40 VETAAITNALSLKTGDLLYAEKVDADVRAVYKLGQFIDVRAETEQGDGGVVLVYTVQEKP 99
Query: 217 EFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLF--GMVSGV 274
+ EG L T V DA + + + L + Y + G + + +
Sbjct: 100 IIREVRIEGNKELSTDKVRDALGLKANTIFSQKELTLAGKRVKKLYGDEGYYLAEVTTRS 159
Query: 275 EILSGGIIRLQVAEAEVNNI---SIRFLDRKTGEPTKGKTRPET 315
E S +R+ V+ AE + SIRF K +K + ET
Sbjct: 160 EKRSDTDVRVIVSVAEGEKVLIKSIRFEGNKAFNASKLRGVMET 203
Score = 46 (21.3 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 593 NFSPHEAFAIGGTNSVRGYE 612
+ S E F GG N++RG+E
Sbjct: 625 DISIDERFFAGGINTLRGFE 644
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.136 0.401 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 693 634 0.00092 120 3 11 22 0.40 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 5
No. of states in DFA: 617 (66 KB)
Total size of DFA: 327 KB (2167 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 54.16u 0.10s 54.26t Elapsed: 00:00:02
Total cpu time: 54.16u 0.10s 54.26t Elapsed: 00:00:02
Start: Tue May 21 05:00:51 2013 End: Tue May 21 05:00:53 2013