BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005510
(693 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C5J8|OEP80_ARATH Outer envelope protein 80, chloroplastic OS=Arabidopsis thaliana
GN=OEP80 PE=1 SV=1
Length = 732
Score = 1000 bits (2586), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/687 (73%), Positives = 564/687 (82%), Gaps = 35/687 (5%)
Query: 1 MPLRNDDVRFISSPLKIPPFRPEPPVPF----------FAQTLTKSKNSLSHLIYSLNE- 49
M NDDVRF SS ++I P+ F L+ ++NSL+ ++ SL
Sbjct: 1 MHCHNDDVRFSSSSIRIHSPSPKEQHSLLTNLQSCSKTFVSHLSNTRNSLNQMLQSLKNR 60
Query: 50 ------STRSTEPFTRKLQSFAEHLYGKSVRICSTCLSMTG---------AVDTL--VNF 92
S R T+ L S + + GKS I + + T V+T+ ++
Sbjct: 61 HTPPPRSVRRPNLPTQMLNSVTQLMIGKSSPISLSLIQSTQFNWSESRDENVETIRGLSS 120
Query: 93 PLLCSASLSLNQSSAEFPAQSELSTQLQQKAQQP--HSVSRSDEERVLISEVLVRNKDGE 150
PLLC ASLSL + P +S S + + QQ HSVSR+ EERVLISEVLVR KDGE
Sbjct: 121 PLLCCASLSLTR-----PNESTQSVEGKDTVQQQKGHSVSRNAEERVLISEVLVRTKDGE 175
Query: 151 ELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVF 210
ELERKDLE EAL ALKACRANSALT+REVQEDVHRII+SGYFCSC PVAVDTRDGIRL+F
Sbjct: 176 ELERKDLEMEALAALKACRANSALTIREVQEDVHRIIESGYFCSCTPVAVDTRDGIRLMF 235
Query: 211 QVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGM 270
QVEPNQEF GLVCE ANVLP+KF+ +AFRDG+GKV+NI+RL+E ITSINGWYMERGLFG+
Sbjct: 236 QVEPNQEFRGLVCENANVLPSKFIHEAFRDGFGKVINIKRLEEAITSINGWYMERGLFGI 295
Query: 271 VSGVEILSGGIIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSM 330
VS ++ LSGGI+RLQVAEAEVNNISIRFLDRKTGEPTKGKT PETILRQLTTKKGQVYSM
Sbjct: 296 VSDIDTLSGGIVRLQVAEAEVNNISIRFLDRKTGEPTKGKTSPETILRQLTTKKGQVYSM 355
Query: 331 LQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPSGGFSAGGGISSGITSGP 390
LQGKRDV+TVL MGIMEDVSIIPQPAGD+GKVDLIMN VERPSGGFSAGGGISSGITSGP
Sbjct: 356 LQGKRDVDTVLAMGIMEDVSIIPQPAGDSGKVDLIMNCVERPSGGFSAGGGISSGITSGP 415
Query: 391 LSGLIGSFAYSHRNVFGRNQKLNISLERGQIDSIFRINYTDPWIEGDDKRTSRTIMVQNS 450
LSGLIGSFAYSHRN+FGRNQKLN+SLERGQIDSIFRINYTDPWIEGDDKRTSR+IMVQNS
Sbjct: 416 LSGLIGSFAYSHRNLFGRNQKLNVSLERGQIDSIFRINYTDPWIEGDDKRTSRSIMVQNS 475
Query: 451 RTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGNPIIKD 510
RTPG VHGNQPDNSSLTIGRVTAG+E+SRP RPKW+GT GLIFQH+GARDE+GNPIIKD
Sbjct: 476 RTPGNLVHGNQPDNSSLTIGRVTAGVEYSRPFRPKWNGTAGLIFQHAGARDEQGNPIIKD 535
Query: 511 FYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARA 570
FYSSPLTASGK +DE ++AK ES+YTGSGDQGS+MF FNMEQGLPV PEWL FNRV RA
Sbjct: 536 FYSSPLTASGKPHDETMLAKLESIYTGSGDQGSTMFAFNMEQGLPVLPEWLCFNRVTGRA 595
Query: 571 RKGVEIGPARLLLSLSGGHVVGNFSPHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGEIS 630
RKG+ IGPAR L SLSGGHVVG FSPHEAF IGGTNSVRGYEEGAVGSGRSYVVGSGE+S
Sbjct: 596 RKGIHIGPARFLFSLSGGHVVGKFSPHEAFVIGGTNSVRGYEEGAVGSGRSYVVGSGELS 655
Query: 631 FPMLGPVEGVIFSDYGTDLGSGPSVPG 657
FP+ GPVEGVIF+DYGTD+GSG +VPG
Sbjct: 656 FPVRGPVEGVIFTDYGTDMGSGSTVPG 682
>sp|Q6H7M7|OEP80_ORYSJ Outer envelope protein 80, chloroplastic OS=Oryza sativa subsp.
japonica GN=OEP80 PE=3 SV=2
Length = 665
Score = 839 bits (2167), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/537 (77%), Positives = 473/537 (88%), Gaps = 1/537 (0%)
Query: 122 KAQQPHSVSRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQE 181
+ Q+ EERVLISEV VR KDGE LER +LE A AL+ACR N+ALTVREVQE
Sbjct: 79 RRQKDGGGGGGGEERVLISEVAVRGKDGEPLERPELEAAAAAALRACRPNAALTVREVQE 138
Query: 182 DVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAFRDG 241
DVHR+++SG F SCMPVAVDTRDGIRLVF+VEPNQ+FHGLVCEGAN+LP+KF+EDAF D
Sbjct: 139 DVHRVVESGLFRSCMPVAVDTRDGIRLVFEVEPNQDFHGLVCEGANMLPSKFLEDAFHDR 198
Query: 242 YGKVVNIRRLDEVITSINGWYMERGLFGMVSGVEILSGGIIRLQVAEAEVNNISIRFLDR 301
+GK++NIR LD+VI S+NGWY ERGL G+VS EILSGGI+RLQV+EAEVNNI+IRFLDR
Sbjct: 199 HGKIINIRHLDQVIKSVNGWYQERGLTGLVSYAEILSGGILRLQVSEAEVNNINIRFLDR 258
Query: 302 KTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGK 361
+TGEPT GKT+PETILR LTTKKGQ Y+ Q KRDVET+LTMGIMEDV+IIPQP GD+ K
Sbjct: 259 RTGEPTVGKTQPETILRHLTTKKGQAYNRAQVKRDVETILTMGIMEDVTIIPQPVGDSNK 318
Query: 362 VDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQI 421
VDL+MN+VERPSGGFSAGGGISSGIT+GPLSGLIGSFAYSHRNVFGRN+KLN+SLERGQI
Sbjct: 319 VDLVMNLVERPSGGFSAGGGISSGITNGPLSGLIGSFAYSHRNVFGRNKKLNLSLERGQI 378
Query: 422 DSIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVH-GNQPDNSSLTIGRVTAGMEFSR 480
DSIFR+NYTDPWI+GD+KRTSRTIMVQNSRTPGT +H G+ PD+ +TIGRVTAG+E+SR
Sbjct: 379 DSIFRLNYTDPWIDGDNKRTSRTIMVQNSRTPGTLIHGGDHPDHGPITIGRVTAGIEYSR 438
Query: 481 PIRPKWSGTVGLIFQHSGARDEKGNPIIKDFYSSPLTASGKTNDEMLIAKFESVYTGSGD 540
P RPKWSGT+GLIFQH+GARD+KGNPII+DFY+S LTASG D+ L+AK ESVYT SGD
Sbjct: 439 PFRPKWSGTLGLIFQHAGARDDKGNPIIRDFYNSQLTASGNAYDDTLLAKLESVYTDSGD 498
Query: 541 QGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGVEIGPARLLLSLSGGHVVGNFSPHEAF 600
+ S+MFVFN+EQGLP+ PEWL FNRV AR R+G EIGPARLLLS SGGHV GNFSPHEAF
Sbjct: 499 RSSTMFVFNIEQGLPILPEWLSFNRVTARLRQGYEIGPARLLLSASGGHVEGNFSPHEAF 558
Query: 601 AIGGTNSVRGYEEGAVGSGRSYVVGSGEISFPMLGPVEGVIFSDYGTDLGSGPSVPG 657
AIGGTNSVRGYEEGAVGSGRSY VGSGE+S M GP+EGV+F DYG+DL SGP VPG
Sbjct: 559 AIGGTNSVRGYEEGAVGSGRSYAVGSGEVSCRMFGPLEGVVFGDYGSDLSSGPKVPG 615
>sp|A2X208|OEP80_ORYSI Outer envelope protein 80, chloroplastic OS=Oryza sativa subsp.
indica GN=OEP80 PE=3 SV=1
Length = 665
Score = 838 bits (2164), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/537 (77%), Positives = 473/537 (88%), Gaps = 1/537 (0%)
Query: 122 KAQQPHSVSRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQE 181
+ Q+ EERVLISEV VR KDGE LER +LE A AL+ACR N+ALTVREVQE
Sbjct: 79 RRQKDGGGGGGGEERVLISEVAVRGKDGEPLERPELEAAAAAALRACRPNAALTVREVQE 138
Query: 182 DVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAFRDG 241
DVHR+++SG F SCMPVAVDTRDGIRLVF+VEPNQ+FHGLVCEGAN+LP+KF+EDAF D
Sbjct: 139 DVHRVVESGLFRSCMPVAVDTRDGIRLVFEVEPNQDFHGLVCEGANMLPSKFLEDAFHDR 198
Query: 242 YGKVVNIRRLDEVITSINGWYMERGLFGMVSGVEILSGGIIRLQVAEAEVNNISIRFLDR 301
+GK++NIR LD+VI S+NGWY ERGL G+VS EILSGGI+RLQV+EAEVNNI+IRFLDR
Sbjct: 199 HGKIINIRHLDQVIKSVNGWYQERGLTGLVSYAEILSGGILRLQVSEAEVNNINIRFLDR 258
Query: 302 KTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGK 361
+TGEPT GKT+PETILR LTTKKGQ Y+ Q KRDVET+LTMGIMEDV+IIPQP GD+ K
Sbjct: 259 RTGEPTVGKTQPETILRHLTTKKGQAYNRAQVKRDVETILTMGIMEDVTIIPQPVGDSNK 318
Query: 362 VDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQI 421
VDL+MN+VERPSGGFSAGGGISSGIT+GPLSGLIGSFAYSHRNVFGRN+KLN+SLERGQI
Sbjct: 319 VDLVMNLVERPSGGFSAGGGISSGITNGPLSGLIGSFAYSHRNVFGRNKKLNLSLERGQI 378
Query: 422 DSIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVH-GNQPDNSSLTIGRVTAGMEFSR 480
DSIFR+NYTDPWI+GD+KRTSRTIMVQNSRTPGT +H G+ PD+ +TIGRVTAG+E+SR
Sbjct: 379 DSIFRLNYTDPWIDGDNKRTSRTIMVQNSRTPGTLIHGGDHPDHGPITIGRVTAGIEYSR 438
Query: 481 PIRPKWSGTVGLIFQHSGARDEKGNPIIKDFYSSPLTASGKTNDEMLIAKFESVYTGSGD 540
P RPKWSGT+GLIFQH+GARD+KGNPII+DFY+S LTASG D+ L+AK ESVYT SGD
Sbjct: 439 PFRPKWSGTLGLIFQHAGARDDKGNPIIRDFYNSQLTASGNAYDDTLLAKLESVYTDSGD 498
Query: 541 QGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGVEIGPARLLLSLSGGHVVGNFSPHEAF 600
+ S+MFVFN+EQGLP+ PEWL FNRV AR R+G EIGPARLLLS SGGHV GNFSPHEAF
Sbjct: 499 RSSTMFVFNIEQGLPILPEWLSFNRVTARLRQGYEIGPARLLLSASGGHVEGNFSPHEAF 558
Query: 601 AIGGTNSVRGYEEGAVGSGRSYVVGSGEISFPMLGPVEGVIFSDYGTDLGSGPSVPG 657
AIGGTNSVRGYEEGAVGSGRSY VGSGE+S M GP+EGV+F DYG+DL SGP VPG
Sbjct: 559 AIGGTNSVRGYEEGAVGSGRSYAVGSGEVSCRMFGPLEGVVFGDYGSDLSSGPKVPG 615
>sp|Q43715|TOC75_PEA Protein TOC75, chloroplastic OS=Pisum sativum GN=TOC75 PE=1 SV=1
Length = 809
Score = 113 bits (283), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 131/528 (24%), Positives = 224/528 (42%), Gaps = 60/528 (11%)
Query: 182 DVHRIIDSGYFCSCMPVAVD--TRDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAFR 239
D R I+ G PV +D + ++ F +E+ + L V + +
Sbjct: 243 DRFRCINVGLMGQSKPVEMDPDMSEKEKIEFFRRQEREYKRRISSARPCLLPTSVHEEIK 302
Query: 240 DGYGKV--VNIRRLDEVITSINGWYMERGL-------FGMVSGVEILSGGIIRLQVAEAE 290
D + V+ R L ++ + WY E G FG ++ E++ +V E +
Sbjct: 303 DMLAEQGRVSARLLQKIRDRVQSWYHEEGYACAQVVNFGNLNTREVV------CEVVEGD 356
Query: 291 VNNISIRFLDRKTGEPTKGKTRPETILRQLTTK--KGQVYSMLQGKRDVETVLTMGIMED 348
+ +SI++LD K G +G T + R+L + G +++ GK+ + + ++ + +
Sbjct: 357 ITKLSIQYLD-KLGNVVEGNTEGPVVQRELPKQLLPGHTFNIEAGKQALRNINSLALFSN 415
Query: 349 VSIIPQP-AGDTGK--VDLIMNVVERPSGGFSAGGGISSGITSGPLSGLI---GSFAYSH 402
+ + P+P + G V++ + +E+ S S I G P + G+ + H
Sbjct: 416 IEVNPRPDEMNEGSIIVEIKLKELEQKSAEVSTEWSIVPGRGGRPTLASLQPGGTITFEH 475
Query: 403 RNVFGRNQKLNISLERG-----QIDSIFRINYTDPWIEGDDKRTSRTIMVQ--NSRTPGT 455
RN+ G N+ L S+ Q D F++ Y P+++G D +RT+ V NSR
Sbjct: 476 RNLQGLNRSLTGSVTTSNFLNPQDDLAFKMEYAHPYLDGVDNPRNRTLRVSCFNSRKLSP 535
Query: 456 HVHGNQ--PDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDE------KGNPI 507
G + S+ + R + + T GL+ + RDE G +
Sbjct: 536 VFTGGPGVDEVPSIWVDRAGVKANITENFSRQSKFTYGLVMEEIITRDESNHICSNGQRV 595
Query: 508 IKDFYSS----PLTASGKTNDEMLIAKF----ESVYTGSGDQGSSMFVFNMEQGLPVWPE 559
+ + S P T SG D M + ++ +G S +F ++QGL V
Sbjct: 596 LPNGAISADGPPTTLSGTGIDRMAFLQANITRDNTRFVNGTIVGSRNMFQVDQGLGVGSN 655
Query: 560 WLFFNRVNARARK-----GVEIG-----PARLLLSLSGGHVVGNFSPHEAFAIGGTNSVR 609
+ FFNR K VE G P L+L G VG+ ++AF +GG SVR
Sbjct: 656 FPFFNRHQLTVTKFLQLMSVEEGAGKSPPPVLVLHGHYGGCVGDLPSYDAFTLGGPYSVR 715
Query: 610 GYEEGAVGSGRSYVVGSGEISFPMLGPVEGVIFSDYGTDLGSGPSVPG 657
GY G +G+ R+ + + EI P+ G F+++GTDLGS V G
Sbjct: 716 GYNMGEIGAARNILELAAEIRIPIKG-THVYAFAEHGTDLGSSKDVKG 762
>sp|Q84Q83|TOC75_ORYSJ Protein TOC75, chloroplastic OS=Oryza sativa subsp. japonica
GN=TOC75 PE=2 SV=2
Length = 817
Score = 99.8 bits (247), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 112/459 (24%), Positives = 194/459 (42%), Gaps = 53/459 (11%)
Query: 246 VNIRRLDEVITSINGWYMERGLF-GMVSGVEILSGGIIRLQVAEAEVNNISIRFLDRKTG 304
V+ R L + + WY G V L+ + +V E ++ + +F D K G
Sbjct: 318 VSARLLQRIRDHVQKWYHNEGFVCAQVVNFGNLNTSEVVCEVVEGDITKVEYQFQD-KLG 376
Query: 305 EPTKGKTRPETILRQL--TTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGK- 361
+G T+ I R+L + G ++++ GK+ ++ + ++ + ++ + P+P D K
Sbjct: 377 NFVEGNTQIPIIDRELPQQLRPGHIFNIGAGKQALKNINSLALFSNIEVNPRP--DETKE 434
Query: 362 ----VDLIMNVVERPSGGFSAGGGISSGITSGPLSGLI---GSFAYSHRNVFGRNQKL-- 412
V++ + +E S S I G P I G+ ++ HRN++G N+ +
Sbjct: 435 GGIVVEIKLKELEPKSAEVSTEWSIVPGREGRPTLASIQPGGTVSFEHRNIYGLNRSIVG 494
Query: 413 ---NISLERGQIDSIFRINYTDPWIEG-DDKRTSRTIMVQ--NSR--TPGTHVHGNQPDN 464
+ +L Q D F++ Y P+++G DD+ +RT N+R +P N +
Sbjct: 495 SVTSSNLLNPQDDLSFKLEYVHPYLDGVDDRNKNRTFKTSCFNTRKLSPVFVAGPNMDEA 554
Query: 465 SSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGNPIIK----------DFYSS 514
+ + RV + + T GL+ + RDE +
Sbjct: 555 PPVWVDRVGFKANITESFTRQSKFTYGLVVEEITTRDETNSICTHGSRAMPSGGLSMDGP 614
Query: 515 PLTASGKTNDEML-----IAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNAR 569
P T SG D M I + + + G +F ++QGL + + FFNR
Sbjct: 615 PTTLSGTGIDRMAFLQANITRDNTEFVNGAVIGDRC-IFQLDQGLGIGSKNPFFNRHQLT 673
Query: 570 ARKGVEIG----------PARLLLSLSGGHVVGNFSPHEAFAIGGTNSVRGYEEGAVGSG 619
K V + PA L+L VG+ ++AF +GG SVRGY G +G+
Sbjct: 674 LTKFVNLNKQEKGAGKPLPAVLVLHGHYAGCVGDLPSYDAFTLGGPYSVRGYGMGELGAS 733
Query: 620 RSYVVGSGEISFPMLGP-VEGVIFSDYGTDLGSGPSVPG 657
R+ + + E+ P+ V G F ++GTDLGS V G
Sbjct: 734 RNVLEVASELRIPVRNTYVYG--FVEHGTDLGSSKDVKG 770
>sp|Q9STE8|TC753_ARATH Protein TOC75-3, chloroplastic OS=Arabidopsis thaliana GN=TOC75-3
PE=1 SV=1
Length = 818
Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 129/535 (24%), Positives = 217/535 (40%), Gaps = 74/535 (13%)
Query: 182 DVHRIIDSGYFCSCMPVAVDT--RDGIRLVFQVEPNQEFHGLVCEG-ANVLPTKF---VE 235
D R I+ G P+ +D+ D +L + +++ + +LP V
Sbjct: 252 DRFRCINVGLMVQSKPIEMDSDMTDKEKLEYYRSLEKDYKRRIDRARPCLLPAPVYGEVM 311
Query: 236 DAFRDGYGKVVNIRRLDEVITSINGWYMERGL-------FGMVSGVEILSGGIIRLQVAE 288
RD GKV + R L + + WY + G FG ++ E++ +V E
Sbjct: 312 QMLRD-QGKV-SARLLQRIRDRVQKWYHDEGYACAQVVNFGNLNTKEVVC------EVVE 363
Query: 289 AEVNNISIRFLDRKTGEPTKGKTRPETILRQL--TTKKGQVYSMLQGKRDVETVLTMGIM 346
++ + I+F D K G +G T+ + R+L ++G V+++ GK+ + + ++G+
Sbjct: 364 GDITQLVIQFQD-KLGNVVEGNTQVPVVRRELPKQLRQGYVFNIEAGKKALSNINSLGLF 422
Query: 347 EDVSIIPQPAGDTGK---VDLIMNVVERPSGGFSAGGGISSGITSGPLSGLI---GSFAY 400
++ + P+P V++ + +E+ S S I G P GS +
Sbjct: 423 SNIEVNPRPDEKNEGGIIVEIKLKELEQKSAEVSTEWSIVPGRGGAPTLASFQPGGSVTF 482
Query: 401 SHRNVFGRNQKLNISLERG-----QIDSIFRINYTDPWIEGDDKRTSRTIMVQ--NSR-- 451
HRN+ G N+ L S+ Q D F++ Y P+++G +RT NSR
Sbjct: 483 EHRNLQGLNRSLMGSVTTSNFLNPQDDLSFKLEYVHPYLDGVYNPRNRTFKTSCFNSRKL 542
Query: 452 ----TPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDE----- 502
T G V P + + R + + T GL+ + RDE
Sbjct: 543 SPVFTGGPGVEEVPP----IWVDRAGVKANITENFTRQSKFTYGLVMEEITTRDESSHIA 598
Query: 503 -KGNPIIKDFYSS----PLTASGKTNDEML-----IAKFESVYTGSGDQGSSMFVFNMEQ 552
G ++ S P T SG D M I + + + G VF ++Q
Sbjct: 599 ANGQRLLPSGGISADGPPTTLSGTGVDRMAFLQANITRDNTKFVNGAVVGQRT-VFQVDQ 657
Query: 553 GLPVWPEWLFFNRVNARARKGVEIG----------PARLLLSLSGGHVVGNFSPHEAFAI 602
GL + ++ FFNR K +++ P L+L G VG+ ++AF +
Sbjct: 658 GLGIGSKFPFFNRHQLTMTKFIQLREVEQGAGKSPPPVLVLHGHYGGCVGDLPSYDAFVL 717
Query: 603 GGTNSVRGYEEGAVGSGRSYVVGSGEISFPMLGPVEGVIFSDYGTDLGSGPSVPG 657
GG SVRGY G +G+ R+ EI P+ F ++G DLGS V G
Sbjct: 718 GGPYSVRGYNMGELGAARNIAEVGAEIRIPVKN-THVYAFVEHGNDLGSSKDVKG 771
>sp|P0C891|OEP80_PEA Outer envelope protein 80, chloroplastic (Fragments) OS=Pisum
sativum GN=OEP80 PE=1 SV=1
Length = 158
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 90/274 (32%), Positives = 100/274 (36%), Gaps = 156/274 (56%)
Query: 283 RLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLT 342
+LQV+EAEVNNISIRFLDRK
Sbjct: 11 KLQVSEAEVNNISIRFLDRK---------------------------------------- 30
Query: 343 MGIMEDVSIIPQPAGDTGKVDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSH 402
SI+PQPA VDLI+ GLIGSFAYSH
Sbjct: 31 -------SIVPQPAQTA--VDLIVR-------------------------GLIGSFAYSH 56
Query: 403 RNVFGRNQKLNISLERGQIDSIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQP 462
R LN+SLER TPGT VHGNQ
Sbjct: 57 R--------LNLSLER---------------------------------TPGTLVHGNQD 75
Query: 463 DNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGNPIIKDFYSSPLTASGKT 522
NS+LTIGR WSGT GLIFQ Y+SPLTASG T
Sbjct: 76 GNSNLTIGR--------------WSGTAGLIFQR---------------YNSPLTASGNT 106
Query: 523 NDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPV 556
+ E L+AK S+ EQGLPV
Sbjct: 107 HTETLLAK------------SATLELTDEQGLPV 128
>sp|Q5IZC8|TC754_ARATH Protein TOC75-4, chloroplastic OS=Arabidopsis thaliana GN=TOC75-4
PE=2 SV=1
Length = 396
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 11/121 (9%)
Query: 547 VFNMEQGLPVWPEWLFFNRVNARAR-----KGVEIG-----PARLLLSLSGGHVVGNFSP 596
+F ++QGL + + FNR K VE G P L+L G +G+
Sbjct: 230 IFQVDQGLGIGNNFPLFNRHQLSLTSFIQLKQVEEGSDKPQPPVLVLHGRYGGCIGDLPS 289
Query: 597 HEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGEISFPMLGPVEGVIFSDYGTDLGSGPSVP 656
++ FA+GG NSVRGY G +G+ ++ + EI P+ F+++G DLGS V
Sbjct: 290 YDVFALGGPNSVRGYSMGELGAAKNILELGAEIRIPVKN-THVYAFAEHGNDLGSSKDVK 348
Query: 657 G 657
G
Sbjct: 349 G 349
>sp|Q9K1H0|BAMA_NEIMB Outer membrane protein assembly factor BamA OS=Neisseria
meningitidis serogroup B (strain MC58) GN=bamA PE=1 SV=1
Length = 797
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 93/392 (23%), Positives = 141/392 (35%), Gaps = 88/392 (22%)
Query: 310 KTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQP-AGDTGKVDLIMNV 368
KTR E + R+L + Y + +R E V +G ++V P AG KVDL M++
Sbjct: 359 KTRDEVVRRELRQMESAPYDTSKLQRSKERVELLGYFDNVQFDAVPLAGTPDKVDLNMSL 418
Query: 369 VERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQIDSIFRIN 428
ER +G +S+G +GL+ S S N+FG + + R + ++
Sbjct: 419 TERSTGSLD----LSAGWVQD--TGLVMSAGVSQDNLFGTGKSAALRASRSKTTLNGSLS 472
Query: 429 YTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGN--QPDNSSLTIGRVT-----AGMEFSRP 481
+TDP+ D + G V+G P +S +I + AG+ S P
Sbjct: 473 FTDPYFTAD------------GVSLGYDVYGKAFDPRKASTSIKQYKTTTAGAGIRMSVP 520
Query: 482 IRPKWSGTVGLIFQHSGARDEKGNPIIKDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQ 541
+ GL+ +H P Y+ + GKT+ + + G +
Sbjct: 521 VTEYDRVNFGLVAEHLTVNTYNKAP---KHYADFIKKYGKTDGT------DGSFKGWLYK 571
Query: 542 GSSMFVFNMEQGLPVWPEWLFFNRVNARARKGVEIG-PARLLLSLSGGHVVGNFSP---- 596
G+ + N +WP + VNA EI P L S H F P
Sbjct: 572 GTVGWGRNKTDS-ALWPTRGYLTGVNA------EIALPGSKLQYYSATHNQTWFFPLSKT 624
Query: 597 -----------------------HEAFAIGGTNSVRGYEEGAVG-------------SGR 620
E F GG SVRGYE G +G G
Sbjct: 625 FTLMLGGEVGIAGGYGRTKEIPFFENFYGGGLGSVRGYESGTLGPKVYDEYGEKISYGGN 684
Query: 621 SYVVGSGEISFPMLGPVEG-----VIFSDYGT 647
S E+ FPM G + +F+D G+
Sbjct: 685 KKANVSAELLFPMPGAKDARTVRLSLFADAGS 716
Score = 38.1 bits (87), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 81/205 (39%), Gaps = 47/205 (22%)
Query: 280 GIIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVET 339
GI L +A+ + +I + L R T P T+ L K G Y+ G +++
Sbjct: 14 GISPLALADFTIQDIRVEGLQR---------TEPSTVFNYLPVKVGDTYNDTHGSAIIKS 64
Query: 340 VLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPS-GGFSAGGGISSGITSGPLSGLIGSF 398
+ G +DV + +T L++ V+ERP+ G + G + + + + + SF
Sbjct: 65 LYATGFFDDVRV------ETADGQLLLTVIERPTIGSLNITG--AKMLQNDAIKKNLESF 116
Query: 399 AYSHRNVFGR---NQ-------------KLNI-------SLERGQIDSIFRIN------Y 429
+ F + NQ KLNI L R ++D I+
Sbjct: 117 GLAQSQYFNQATLNQAVAGLKEEYLGRGKLNIQITPKVTKLARNRVDIDITIDEGKSAKI 176
Query: 430 TDPWIEGDDKRTSRTIMVQNSRTPG 454
TD EG+ + R +M Q S T G
Sbjct: 177 TDIEFEGNQVYSDRKLMRQMSLTEG 201
>sp|C6V5K2|BAMA_NEORI Outer membrane protein assembly factor BamA OS=Neorickettsia
risticii (strain Illinois) GN=bamA PE=3 SV=1
Length = 738
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 7/134 (5%)
Query: 301 RKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTG 360
RK +T+ I R++ + +Y + +L +G ++V I + D
Sbjct: 335 RKINISGNTRTKDTVIRREMLLSENDLYQPSKVADSRRRILNLGFFDEV-YIEEHKIDGQ 393
Query: 361 KVDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQ 420
+ L + V ERP+G + GG S + G G+F++ N+FG + +L + L++
Sbjct: 394 NLILEVRVKERPTGTLNLSGGYGSDV------GFFGNFSFVENNLFGTSDRLVVELQKAS 447
Query: 421 IDSIFRINYTDPWI 434
+ S + + + I
Sbjct: 448 LGSNYSMEFQRKRI 461
>sp|Q8K9S5|BAMA_BUCAP Outer membrane protein assembly factor BamA OS=Buchnera aphidicola
subsp. Schizaphis graminum (strain Sg) GN=bamA PE=3 SV=1
Length = 799
Score = 35.4 bits (80), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 68/343 (19%), Positives = 130/343 (37%), Gaps = 53/343 (15%)
Query: 311 TRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGK-VDLIMNVV 369
T+ + R++ +G+ +++ + ++++ + + D+++ + + VD+ +
Sbjct: 360 TQDIVLRREMKQIEGEWFNLKLIELGIKSLEKLKFLSDITVQKEILFNKENGVDITYTLK 419
Query: 370 ERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQIDSIFRINY 429
E+P+G + G G G SGL + + S N+FG L S+ + I+
Sbjct: 420 EQPTGTLNFGLG------YGRDSGLSFNASISQDNLFGSGNSLKASIIKNDNQKYADISI 473
Query: 430 TDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGME--FSRPIRPKWS 487
P+ D I + + NS I + T+G E S I
Sbjct: 474 MHPYFIDDGTNLDTRIFYNDFKYNI---------NSFYNIVKTTSGFESDLSFLINAFNR 524
Query: 488 GTVGLIFQHSGA--RDEK-----GNPIIKDFYSSPLTASGKTNDEMLIAKFESVYT-GSG 539
+G + H+G ++EK GN F + L N + + Y SG
Sbjct: 525 VNIGFGYTHNGLLNKEEKFFSKNGNKSSDKFLKTSLVDDFTLNYSLTHDTLKYFYFPISG 584
Query: 540 DQ----------GSS----MFVFNMEQGLPVWPEWLFFNRVNARARKGVEIGPARLLLSL 585
+Q GS F+F+ EQ +P+ E F + RA G + +L
Sbjct: 585 NQTYISGKNTIPGSDNKFYKFLFDSEQYIPLEEEKKFIFLTHIRAGIGNSLNKEKLPF-- 642
Query: 586 SGGHVVGNFSPHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGE 628
+E F +N++RG+ +G + Y+ + E
Sbjct: 643 -----------YENFHAIDSNNIRGFRANTIGPKKIYINSNLE 674
>sp|P46278|CCNB2_MEDSV G2/mitotic-specific cyclin-2 OS=Medicago sativa subsp. varia PE=2
SV=1
Length = 434
Score = 35.4 bits (80), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 13/124 (10%)
Query: 150 EELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCM-PVAVDTRDGIRL 208
EE+E +D+E E + + +C AN++L V E ED+H + C+ P +D
Sbjct: 147 EEVEMEDIEGEMILDIDSCDANNSLAVVEYIEDLHAYYRKIEYLGCVSPTYMDE------ 200
Query: 209 VFQVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLF 268
Q++ N+ ++ + + KF D ++ VN+ +D + N + L
Sbjct: 201 --QLDLNERMRAILVDWLIEVHDKF--DLMQETLFLTVNL--IDRFLAKQNVVRKKLQLV 254
Query: 269 GMVS 272
G+V+
Sbjct: 255 GLVA 258
>sp|Q729H8|BAMA_DESVH Outer membrane protein assembly factor BamA OS=Desulfovibrio
vulgaris (strain Hildenborough / ATCC 29579 / NCIMB
8303) GN=bamA PE=3 SV=1
Length = 791
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 38/90 (42%)
Query: 179 VQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAF 238
+ +++ RI D GYF DG LV+ V +V EG++ + + A
Sbjct: 94 INKEIKRIWDLGYFSDVQASVEQGGDGTVLVYTVTEKPRIDNIVIEGSDKVGHDDILAAM 153
Query: 239 RDGYGKVVNIRRLDEVITSINGWYMERGLF 268
G V+N + L + + + Y + G +
Sbjct: 154 SSKTGSVLNDKLLAQDLQKVTELYRKEGFY 183
Score = 32.7 bits (73), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 6/99 (6%)
Query: 310 KTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVV 369
KTR +LR++ G ++ + +R E + V P +VDL + V
Sbjct: 398 KTRDNVVLREMRIADGDMFEGAKLRRSNERLNRTRYFSQVDTELVPTQKEDEVDLKVKVK 457
Query: 370 ERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGR 408
E+ +G G G S+ G +SG I RN+FG+
Sbjct: 458 EQNTGALIGGVGYSTFYQFG-VSGTI-----MERNLFGK 490
>sp|P30278|CCNB2_MEDSA G2/mitotic-specific cyclin-2 (Fragment) OS=Medicago sativa PE=2
SV=1
Length = 328
Score = 34.3 bits (77), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 13/124 (10%)
Query: 150 EELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCM-PVAVDTRDGIRL 208
EE+E +D+E E + + +C AN++L V E ED+H + C+ P +D
Sbjct: 41 EEVEMEDIEGEMILDIDSCDANNSLAVVEYIEDLHAYYRKIEYLGCVSPTYMDE------ 94
Query: 209 VFQVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLF 268
Q++ N+ ++ + + KF D ++ VN+ +D + N + L
Sbjct: 95 --QLDLNERMRAILVDWLIEVHDKF--DLMQETLFLTVNL--IDRFLAKQNVVRKKLQLV 148
Query: 269 GMVS 272
G+V+
Sbjct: 149 GLVA 152
>sp|C4Y3C1|VPS10_CLAL4 Vacuolar protein sorting/targeting protein 10 OS=Clavispora
lusitaniae (strain ATCC 42720) GN=VPS10 PE=3 SV=1
Length = 1525
Score = 33.9 bits (76), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 12/87 (13%)
Query: 578 PARLLLSLSGGHVVGNFSPHEAFAIGGTNSVRGYEEGAV----GSGRSYVVG-------- 625
P+ + + SPH F T+S G+E+GA+ +G YV+
Sbjct: 915 PSDFKIEAQTAFTILESSPHSIFMHVTTDSTSGHEKGAILKSNSNGTYYVLSLSDVNRNE 974
Query: 626 SGEISFPMLGPVEGVIFSDYGTDLGSG 652
G + + LG +EGV+ ++ TD G
Sbjct: 975 VGYVDYDRLGLLEGVLIANTATDSKEG 1001
>sp|P34616|CADH3_CAEEL Cadherin-3 OS=Caenorhabditis elegans GN=cdh-3 PE=2 SV=1
Length = 3343
Score = 33.1 bits (74), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 12/126 (9%)
Query: 251 LDEVITSINGWYMERGLFGMVSGVEILSGGIIRLQVAEAEVNNISIRFLDRKTGEPTKGK 310
LD + + ++ ++ +FG +EI G+I L E N +IR D + P K
Sbjct: 1390 LDAIASDVSFSIVDGDVFG---NLEIEDSGVISLNSIPNESFNATIRIYDNR--PPFKVH 1444
Query: 311 TRPETILRQLTTKKGQV------YSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDL 364
TI Q+T K V + M G DV ++ I+ I+PQ D+ K+D
Sbjct: 1445 FDDVTIEFQVTQKLRAVTCEDAEFWMFFGNEDVGMLIASEIVT-WRIVPQIGSDSFKIDP 1503
Query: 365 IMNVVE 370
I +++
Sbjct: 1504 ITGIIQ 1509
>sp|Q6PFG8|OLIG3_MOUSE Oligodendrocyte transcription factor 3 OS=Mus musculus GN=Olig3
PE=2 SV=1
Length = 273
Score = 33.1 bits (74), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 45/114 (39%), Gaps = 19/114 (16%)
Query: 580 RLLLSLSGGH-------VVGNFSPHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGEISFP 632
RL+ + GGH VG+ + H A A + V GA+ SG + S +S
Sbjct: 147 RLVGEIYGGHHSAFHCGTVGHSAGHPAHAANAVHPVHPILGGALSSGNA----SSPLSAT 202
Query: 633 MLGPVEGVIFSDYGTDLGSGPSVP-----GGFLYDWPHVSYAFKVCSLPPPPRL 681
L P G I + L PS P G W + +C +PPPP L
Sbjct: 203 SL-PTIGTIRPPH--SLLKAPSTPPALQLGSGFQHWAGLPCPCTICQMPPPPHL 253
>sp|Q3AFC6|HPPA_CARHZ Putative K(+)-stimulated pyrophosphate-energized sodium pump
OS=Carboxydothermus hydrogenoformans (strain Z-2901 /
DSM 6008) GN=hppA PE=1 SV=1
Length = 686
Score = 32.7 bits (73), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 14/91 (15%)
Query: 344 GIMEDVSIIPQPAGDTGKVDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHR 403
GI E + P+ T K+D + N + GF+ G S L+ L AY+
Sbjct: 434 GIAEMAELGPEIRNKTDKLDAVGNTTAAVAKGFAIG--------SAALTALALFSAYTDL 485
Query: 404 NVFGRNQKLNISLERGQIDSIFRINYTDPWI 434
K N +L++ ++ F +N TDPW+
Sbjct: 486 ------AKTNPNLQKYLVNGKFDLNITDPWV 510
>sp|Q7RTU3|OLIG3_HUMAN Oligodendrocyte transcription factor 3 OS=Homo sapiens GN=OLIG3
PE=1 SV=2
Length = 272
Score = 32.7 bits (73), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 45/114 (39%), Gaps = 19/114 (16%)
Query: 580 RLLLSLSGGH-------VVGNFSPHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGEISFP 632
RL+ + GGH VG+ + H A A + V GA+ SG + S +S
Sbjct: 146 RLVGEIYGGHHSAFHCGTVGHSAGHPAHAANSVHPVHPILGGALSSGNA----SSPLSAA 201
Query: 633 MLGPVEGVIFSDYGTDLGSGPSVP-----GGFLYDWPHVSYAFKVCSLPPPPRL 681
L P G I + L PS P G W + +C +PPPP L
Sbjct: 202 SL-PAIGTIRPPH--SLLKAPSTPPALQLGSGFQHWAGLPCPCTICQMPPPPHL 252
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 268,332,800
Number of Sequences: 539616
Number of extensions: 12238233
Number of successful extensions: 31879
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 31810
Number of HSP's gapped (non-prelim): 72
length of query: 693
length of database: 191,569,459
effective HSP length: 125
effective length of query: 568
effective length of database: 124,117,459
effective search space: 70498716712
effective search space used: 70498716712
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)