Query 005510
Match_columns 693
No_of_seqs 347 out of 2275
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 00:36:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005510.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005510hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03138 Protein TOC75; Provis 100.0 3.5E-66 7.6E-71 581.6 56.2 536 130-690 141-780 (796)
2 COG4775 Outer membrane protein 100.0 4.3E-66 9.3E-71 593.2 55.1 524 130-692 165-748 (766)
3 TIGR00992 3a0901s03IAP75 chlor 100.0 1.3E-65 2.8E-70 593.9 57.4 520 138-683 109-703 (718)
4 PRK11067 outer membrane protei 100.0 3.2E-62 7E-67 582.7 61.2 517 130-692 168-785 (803)
5 TIGR03303 OM_YaeT outer membra 100.0 5.7E-59 1.2E-63 551.7 60.6 522 130-692 143-723 (741)
6 COG0729 Outer membrane protein 100.0 2.6E-38 5.7E-43 354.1 35.3 458 188-691 81-576 (594)
7 COG2831 FhaC Hemolysin activat 100.0 2.1E-35 4.5E-40 331.4 42.9 437 218-692 75-534 (554)
8 PF01103 Bac_surface_Ag: Surfa 100.0 3.6E-28 7.7E-33 259.0 28.2 264 404-691 1-304 (323)
9 PF03865 ShlB: Haemolysin secr 99.9 2.4E-22 5.2E-27 220.2 32.8 307 318-652 9-347 (404)
10 TIGR03303 OM_YaeT outer membra 99.9 2.3E-21 4.9E-26 230.4 42.4 230 128-373 60-321 (741)
11 KOG2602 Predicted cell surface 99.9 3.5E-24 7.6E-29 223.0 15.5 362 287-692 34-436 (457)
12 PRK11067 outer membrane protei 99.9 1.9E-22 4.1E-27 241.2 29.5 233 128-373 83-346 (803)
13 COG4775 Outer membrane protein 99.9 4.6E-21 1E-25 221.5 30.4 233 127-375 82-345 (766)
14 PF08479 POTRA_2: POTRA domain 98.9 9.9E-09 2.2E-13 85.1 8.9 72 218-289 3-76 (76)
15 PF07244 Surf_Ag_VNR: Surface 98.8 3.2E-08 7E-13 82.3 9.8 73 217-289 2-78 (78)
16 PF07244 Surf_Ag_VNR: Surface 98.8 2.6E-08 5.7E-13 82.9 8.6 72 137-215 1-78 (78)
17 PLN03138 Protein TOC75; Provis 98.6 1.6E-06 3.5E-11 99.9 18.4 144 220-379 152-350 (796)
18 TIGR00992 3a0901s03IAP75 chlor 98.5 1.4E-06 3.1E-11 102.3 14.0 155 128-292 171-351 (718)
19 COG2831 FhaC Hemolysin activat 98.1 0.00033 7.1E-09 79.9 22.9 156 133-298 69-229 (554)
20 COG0729 Outer membrane protein 97.4 0.001 2.3E-08 76.0 12.2 151 130-289 107-275 (594)
21 PF08479 POTRA_2: POTRA domain 95.9 0.044 9.6E-07 45.2 8.0 70 138-215 2-76 (76)
22 PF11854 DUF3374: Protein of u 90.7 40 0.00087 39.6 25.9 192 465-691 333-548 (637)
23 PF08478 POTRA_1: POTRA domain 88.2 1.3 2.8E-05 35.4 5.6 68 290-371 2-69 (69)
24 PF08478 POTRA_1: POTRA domain 83.7 3.2 6.9E-05 33.0 5.7 67 217-288 2-68 (69)
25 PRK05529 cell division protein 83.4 6.3 0.00014 40.6 9.2 71 289-373 61-131 (255)
26 PF10082 DUF2320: Uncharacteri 70.5 1.6E+02 0.0035 31.8 17.7 28 470-497 332-359 (381)
27 COG1589 FtsQ Cell division sep 63.6 21 0.00045 37.1 7.1 70 290-373 61-130 (269)
28 PF10437 Lip_prot_lig_C: Bacte 59.7 22 0.00048 29.7 5.4 54 203-258 15-68 (86)
29 PF11854 DUF3374: Protein of u 58.4 1.4E+02 0.0031 35.1 13.3 61 441-501 538-600 (637)
30 PF15603 Imm45: Immunity prote 56.8 21 0.00045 29.8 4.5 61 207-267 9-77 (82)
31 PRK05529 cell division protein 53.4 45 0.00099 34.3 7.4 73 134-219 58-133 (255)
32 PF10437 Lip_prot_lig_C: Bacte 51.5 8.7 0.00019 32.2 1.5 61 278-348 14-76 (86)
33 PRK10775 cell division protein 41.4 90 0.0019 32.5 7.5 70 290-373 57-128 (276)
34 TIGR02876 spore_yqfD sporulati 37.4 96 0.0021 34.0 7.2 69 138-216 104-175 (382)
35 TIGR03509 OMP_MtrB_PioB decahe 34.8 4.9E+02 0.011 30.7 13.1 34 464-497 575-608 (649)
36 PF11059 DUF2860: Protein of u 30.6 6.7E+02 0.014 26.5 14.9 66 422-500 168-233 (297)
37 PF04338 DUF481: Protein of un 26.5 5.9E+02 0.013 24.5 22.2 32 471-502 85-120 (210)
38 TIGR00545 lipoyltrans lipoyltr 26.0 2.2E+02 0.0048 30.4 7.5 50 282-341 262-311 (324)
39 COG1589 FtsQ Cell division sep 25.1 1.7E+02 0.0037 30.3 6.3 118 137-267 60-191 (269)
40 TIGR00545 lipoyltrans lipoyltr 24.8 1.6E+02 0.0034 31.5 6.2 54 203-258 257-310 (324)
41 PRK03822 lplA lipoate-protein 23.6 2E+02 0.0044 30.9 6.7 55 203-259 262-316 (338)
42 TIGR03016 pepcterm_hypo_1 unch 23.5 3.9E+02 0.0084 29.8 9.2 65 422-498 345-410 (431)
43 PF04338 DUF481: Protein of un 23.5 6.7E+02 0.014 24.1 24.6 138 467-646 47-186 (210)
44 PF10082 DUF2320: Uncharacteri 21.9 1E+03 0.022 25.6 30.8 157 470-672 219-379 (381)
45 PF13505 OMP_b-brl: Outer memb 21.1 1.5E+02 0.0033 27.0 4.8 66 622-690 85-154 (176)
46 PF13505 OMP_b-brl: Outer memb 21.1 6.1E+02 0.013 22.8 12.6 30 468-497 127-156 (176)
47 PF03349 Toluene_X: Outer memb 20.3 1.1E+03 0.024 25.6 18.7 30 469-498 366-395 (427)
No 1
>PLN03138 Protein TOC75; Provisional
Probab=100.00 E-value=3.5e-66 Score=581.56 Aligned_cols=536 Identities=21% Similarity=0.315 Sum_probs=435.8
Q ss_pred ccCccccceEEEEEEEeCCCCccChhhHHHHHHHHhhccCCCCccCHHHHHHHHHHHHHcCccceEeEEEE--ecCCcEE
Q 005510 130 SRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAV--DTRDGIR 207 (693)
Q Consensus 130 ~~~~~e~~~I~~I~i~G~~N~~i~~~~l~~~~~~~l~~~~~g~~~~~~~l~~d~~~L~~~GYf~a~v~~~~--~~~~~v~ 207 (693)
...--++.+|++|.|.|. +.-....+++.+.++| .+++|..|++..|++|+++|++.|||+ .|.+.+ ..++.+.
T Consensus 141 ~~~~~~~~~vs~v~~~~~--~~~~~~~~e~~l~~~i-~~kpG~v~trsqLq~dv~~I~~tG~F~-~V~~~v~~~~dg~v~ 216 (796)
T PLN03138 141 KLSGFKRYKVSEIEFFDR--RRNTTVGTEDSFFEMV-TLRPGGVYTKAQLQKELETLASCGMFE-KVDLEGKTKPDGTLG 216 (796)
T ss_pred hcCCcceEEEEEEEEecc--ccCCCcchHHHHHHHH-hcCCCCccCHHHHHHHHHHHHhcCCce-EEEEEEEeCCCCeEE
Confidence 445567889999999871 2212223444444456 699999999999999999999999999 777654 3577899
Q ss_pred EEEEEeeCCc--eEEEE------------EEcCcCCChhHHHHhhccCC-----------------------------CC
Q 005510 208 LVFQVEPNQE--FHGLV------------CEGANVLPTKFVEDAFRDGY-----------------------------GK 244 (693)
Q Consensus 208 l~~~V~EG~~--i~~I~------------~~Gn~~~~~~~L~~~~~~~~-----------------------------G~ 244 (693)
|+|.|+||+. +++|+ |+||+.+++++|++.+..++ ..
T Consensus 217 V~~~i~Eg~~~~I~~I~~i~~~~~~~~~~~~GN~~fs~~el~~~~~~~e~~~~~~~~~a~~~~Lp~~v~~e~f~~~~~~g 296 (796)
T PLN03138 217 LTISFTESTWQSADSFRCINVGLMSQSKPIEMDEDMTDKEKMEYYRSQEKDYKRRIRKARPCLLPKSVRREVLGMLRDQG 296 (796)
T ss_pred EEEEEEeCCceeeeeeeecccccccccceeeCCcccCHHHHHHHhhccccccccccccccccccchHHHHHHHhhhccCC
Confidence 9999999986 55888 99999999999888876643 12
Q ss_pred cccHHHHHHHHHHHHHHHHhCCc-eeEeeeEEEeeCcEEEEEEEEEEEEeEEEEEccccCCCCCcCCCCHHHHHhhcc--
Q 005510 245 VVNIRRLDEVITSINGWYMERGL-FGMVSGVEILSGGIIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLT-- 321 (693)
Q Consensus 245 ~~~~~~l~~~~~~I~~~Y~~~GY-~a~V~~~~~~~~g~v~~~I~eg~I~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l~-- 321 (693)
.|+.++|++++++|+++|.++|| +++|.+....+++.|+++|.||.+..|+|++.++ .|+.+..+|+|.+|+|+|+
T Consensus 297 klN~e~Lq~die~I~~~Y~d~GYafa~V~~~~~id~g~Vtl~V~EG~i~~I~V~~~dr-ig~~i~GNTrD~VIRREL~~~ 375 (796)
T PLN03138 297 KVSARLLQRIRDRVQKWYHDEGYACAQVVNFGNLNTNEVVCEVVEGDITKVVIQFQDK-LGNVVEGNTQLPIIDRELPKQ 375 (796)
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCceEEEecccccCCceEEEEEecccEEEEEEEeccc-ccccccCCccCeEEeeecccc
Confidence 59999999999999999999999 8999987777778899999999999999886653 2433345679999999997
Q ss_pred cCCCCccchHhHHHHHHHHHhCCCcccceeeeecC-CCCCeEEEEEEEEE--cCCceEEEeEeeecCcC--CC-CCcceE
Q 005510 322 TKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPA-GDTGKVDLIMNVVE--RPSGGFSAGGGISSGIT--SG-PLSGLI 395 (693)
Q Consensus 322 l~~G~~~~~~~l~~~~~~L~~lg~F~~V~i~~~~~-~~~~~v~l~i~V~E--~~~~~~~~g~gyss~~~--~g-~~~g~~ 395 (693)
++||++||..++++++++|+++|+|++|++++.|+ ..++.++|+|+|+| .+++.++++++|+.+.. .+ ...++.
T Consensus 376 lkeGd~fN~~~l~~slqRL~~LGlFedV~V~~~Pg~~~p~~VdL~V~VkE~e~~t~~ls~g~g~~~G~g~~Psl~S~g~~ 455 (796)
T PLN03138 376 LRQGHIFNIEAGKQALRNINSLALFSNIEVNPRPDEKNEGGIVVEIKLKELEPKSAEVSTEWSIVPGRGGRPTLASIQPG 455 (796)
T ss_pred cCCCcccCHHHHHHHHHHHHhCCCCceeEEEeccCCCCCCeEEEEEEEEEccCCceeEecccccccccCCCCccccccce
Confidence 59999999999999999999999999999999886 46899999999999 55566666666643210 00 125678
Q ss_pred EEEEEeecccCcCCeEEEEEEEe-----cceeeEEEEEEecccccC--CCCceEEEEEEEeeccCCccccCCC--CCCCc
Q 005510 396 GSFAYSHRNVFGRNQKLNISLER-----GQIDSIFRINYTDPWIEG--DDKRTSRTIMVQNSRTPGTHVHGNQ--PDNSS 466 (693)
Q Consensus 396 ~~~~~~~~NlfG~G~~l~l~~~~-----g~~~~~~~lsy~~P~~~~--~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~~ 466 (693)
+.++|+|+||+|+|+++.++++. ++.+..+.++|++||+.+ ++.++++.+++|+++....++.+.. .....
T Consensus 456 Gtvs~~~~NL~G~g~~L~~~v~~s~~~~g~~d~~f~lsytdPWi~g~~d~~rts~~~~~f~~r~~s~vf~~~~~~~~~~~ 535 (796)
T PLN03138 456 GTVSFEHRNIQGLNRSILGSVTSSNLLNPQDDLSFKLEYVHPYLDGVYNPRNRTFRASCFNSRKLSPVFTGGPGVDEVPP 535 (796)
T ss_pred eEEEEeccccccccceEEEEEEeecccCCccceEEEEEeecccccCCCCcccccEEEEEEecCcCCceeeCCCCcccCCc
Confidence 89999999999999999999998 356789999999999987 4555899999999887654444321 22234
Q ss_pred eEEeEEEEEEEEEeecCCCeEEEEEEEEEEEeeecCCCCccc-------------------------ccccCCceeeecc
Q 005510 467 LTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGNPII-------------------------KDFYSSPLTASGK 521 (693)
Q Consensus 467 ~~~~~~g~~l~l~~~l~~~~~~~~gl~~~~~~~~~~~~~~~~-------------------------~~~~~~~l~~~~d 521 (693)
....+.|+++.+++|+.+.+.+++++.|++....+..+.... .+++...+.+++|
T Consensus 536 ~~~~R~G~~~~~~rp~~~~~~~s~g~~~q~v~~~d~~g~~~~~~~~~~~~~~~~~~g~plT~S~~g~D~l~~~~~~~trd 615 (796)
T PLN03138 536 IWVDRAGFKANITENFTRQSKFTYGLVVEEITTRDETSHICTHGQRVLPSGGLSADGPPTTLSGTGIDRMAFLQANITRD 615 (796)
T ss_pred ceEeecccceEeecccCCCCceEEEEEEEEEEeecCCCCccccccccccccccccCCCceeeccCCcchhhheeeeeEec
Confidence 567899999999999998888899999999888765443211 1233455678899
Q ss_pred cCCceeEEEEEEEecCCCCCCCceEEEEeeecCCcCCCcceeEEEEEEEEEeEEec----------CceEEEEEeeceec
Q 005510 522 TNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGVEIG----------PARLLLSLSGGHVV 591 (693)
Q Consensus 522 ~rD~~~~P~~g~~~~~~G~~g~~~~~~~~~~~~~~~~~~~~f~k~~~~~~~y~~l~----------~~~l~~~~~~G~~~ 591 (693)
++|++..|+ .|. .+.++++|++|.+.++..|.|+.+++++|+|+. +.+|++++++|.+.
T Consensus 616 ~~~~~~~pt-------~G~----~~~~~~EQ~lpvg~~~~~fNR~~~~~s~fipv~~~~~~~~~~~Pq~la~~~~aG~~~ 684 (796)
T PLN03138 616 NTKFVNGAV-------VGD----RHIFQVDQGLGIGSKFPFFNRHQLTVTKFIQLNKVEKGAGKPPPPVLVLHGHYGGCV 684 (796)
T ss_pred cCCCCCCCC-------ccc----eEEEEeeeeccccCCCCceEEEEEEEEEEEeeccccccccCCCCcEEEEEEecccee
Confidence 999998886 553 279999999998888889999999999999982 45799999999999
Q ss_pred cCCCccCceecCCCCCccCCcCCCccccceEEEEeEEEEEecCCceeEEEEEEeeecCCCCCCCCCCCCCc------Ccc
Q 005510 592 GNFSPHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGEISFPMLGPVEGVIFSDYGTDLGSGPSVPGGFLYD------WPH 665 (693)
Q Consensus 592 g~lp~~e~F~lGG~~svRGy~~~~lg~G~~~~~~s~Elr~pl~~~l~~~~F~D~G~v~~~~~~~~~~~~~~------~~s 665 (693)
|++|++|.|.|||.+|||||..++++.|++++.+++|||+|+ .++.+++|+|+|+.|....+++++|... -.|
T Consensus 685 GdLPpYEAF~LGG~nSVRGY~eG~lg~gRs~l~asaEyRfPi-~~~~g~~F~D~GsdLgS~~~V~G~P~~~r~kpG~G~s 763 (796)
T PLN03138 685 GDLPSYDAFTLGGPYSVRGYNMGELGAARNILEVAAELRIPV-RNTHVYAFAEHGTDLGSSKDVKGNPTEFFRRAGHGSS 763 (796)
T ss_pred cCCCcHHhcccCCCCcccCcccCcccccceeEEEEEEEEeee-ccceEEEEEEeccccCCCCCCCCCchhhccCCCCCcc
Confidence 999999999999999999999999999999999999999999 5678999999999999999999988653 245
Q ss_pred ceeEEEEEecCCCCcccceeecccc
Q 005510 666 VSYAFKVCSLPPPPRLQPYFVYLFC 690 (693)
Q Consensus 666 ~G~Glr~~tpiGPi~~dir~dy~~~ 690 (693)
+|+|+| +||| |+|||++
T Consensus 764 yG~Gvr----lGpi----R~dYa~~ 780 (796)
T PLN03138 764 YGVGVK----LGLV----RAEYAVD 780 (796)
T ss_pred cceeeE----ecce----eEEEeec
Confidence 555655 7876 5666665
No 2
>COG4775 Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=4.3e-66 Score=593.19 Aligned_cols=524 Identities=23% Similarity=0.339 Sum_probs=441.6
Q ss_pred ccCccccceEEEEEEEeCCCCccChhhHHHHHHHHhh----ccCCCCccCHHHHHHHHHHHH----HcCccceEeEEE-E
Q 005510 130 SRSDEERVLISEVLVRNKDGEELERKDLETEALTALK----ACRANSALTVREVQEDVHRII----DSGYFCSCMPVA-V 200 (693)
Q Consensus 130 ~~~~~e~~~I~~I~i~G~~N~~i~~~~l~~~~~~~l~----~~~~g~~~~~~~l~~d~~~L~----~~GYf~a~v~~~-~ 200 (693)
.|++|++..|++|.|.| |+.+++++|+..+..+-. ++...+.|+++.++.|+++|. ++||.+..|... +
T Consensus 165 ~i~eG~~~~i~~I~~~G--n~~~s~~~l~~~~~~k~~~~~~~~~~~~~y~~~~l~~D~e~lr~~Y~n~Gy~d~~v~s~~~ 242 (766)
T COG4775 165 VINEGPSAKIKQINFEG--NTAFSDSDLESVVQTKESNIWGWLTRLDKYDPDKLEADLETLRSFYLNRGYADFRVSSTQV 242 (766)
T ss_pred EeCCCCccceeeeEEec--cccccchhhhhheeeccceeEEEEecccccChhhhhccHHHHHHHHHhCceEEEEEeeeee
Confidence 78899999999999999 999999999986632211 234556899999999999995 899999999533 2
Q ss_pred ---ecCCcEEEEEEEeeCCceE--EEEEEcCcCCChhHHHHhhccCCCCcccHHHHHHHHHHHHHHHHhCCc-eeEeeeE
Q 005510 201 ---DTRDGIRLVFQVEPNQEFH--GLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGL-FGMVSGV 274 (693)
Q Consensus 201 ---~~~~~v~l~~~V~EG~~i~--~I~~~Gn~~~~~~~L~~~~~~~~G~~~~~~~l~~~~~~I~~~Y~~~GY-~a~V~~~ 274 (693)
++++.+.|++.|+|||+|+ +|.++|+...+.++|++++..++|++|+.++|+++.++|+++|.+.|| +++|.+.
T Consensus 243 ~~~~~k~~~~vt~~V~EG~~y~~~~i~i~g~~~~~~~el~~~~~~~~g~~fn~~~i~~~~~~I~~~~~~~GY~~a~V~p~ 322 (766)
T COG4775 243 SLDPDKKGVTVTYTVKEGPQYKFGSVLIEGNLAGVSEELEKLLKVKPGKLFNRKKIEDDADKIKERYARYGYAFANVSPQ 322 (766)
T ss_pred cccCCCccEEEEEEEccCCceEEEEEEEEcCccCcHHHHHHhhccCCCceEcHHHHHHHHHHHHHHHHhcCceeeEeeee
Confidence 3678999999999999877 999999999999999999999999999999999999999999999999 8999876
Q ss_pred EEeeC--cE--EEEEEEEE---EEEeEEEEEccccCCCCCcCCCCHHHHHhhcccCCCCccchHhHHHHHHHHHhCCCcc
Q 005510 275 EILSG--GI--IRLQVAEA---EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIME 347 (693)
Q Consensus 275 ~~~~~--g~--v~~~I~eg---~I~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l~l~~G~~~~~~~l~~~~~~L~~lg~F~ 347 (693)
...++ .+ |.++|.++ +|++|.|. || .+|+|++|||+|+++||++||..+++++++||+++|||+
T Consensus 323 ~~~n~~~~tv~v~~~V~~g~~~~V~~i~i~------gn---~rT~D~VIrRE~~~~eGd~fn~~~v~~~~~rL~~lgyF~ 393 (766)
T COG4775 323 PDANDENKTVDVVFRVDEGDRVYVRRIRIR------GN---TRTKDYVIRREMRLKEGDVFNRKLVQRGKRRLRRLGYFE 393 (766)
T ss_pred cccCCCCcEEEEEEEEEcCCceeeeeeeec------CC---CccccHHhhhhhhcCCcchhhHHHHHHHHHHHHhcCCce
Confidence 55443 33 78888886 89999999 99 799999999999999999999999999999999999999
Q ss_pred cceeeeecCCCCCeEEEEEEEEEcCCceEEEeEeeecCcCCCCCcceEEEEEEeecccCcCCeEEEEEEEecceeeEEEE
Q 005510 348 DVSIIPQPAGDTGKVDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQIDSIFRI 427 (693)
Q Consensus 348 ~V~i~~~~~~~~~~v~l~i~V~E~~~~~~~~g~gyss~~~~g~~~g~~~~~~~~~~NlfG~G~~l~l~~~~g~~~~~~~l 427 (693)
+|+++..|+..++.+||+++|+|++++++.+|+||++. +|+.+.++++.+|+||.|+.+++.++.|+..+.+.+
T Consensus 394 ~V~i~~~~~~~~~~vdvvv~VkE~~Tgsi~~G~Gy~s~------~gl~~~~s~~e~N~~G~G~~~~~~~~~g~~~~~~~l 467 (766)
T COG4775 394 SVNIDTAPGSGSDQVDVVVDVKERSTGSINFGLGYGSD------SGLSGFASLSERNFLGTGQSLSLNANLGDKQTSYSL 467 (766)
T ss_pred eeEEEeccCCCCCeEEEEEEEEecCceeEEecccccCC------CceEEEEEEEEeecCccccEEEEEEEeccceEEEEE
Confidence 99999998866779999999999999999999999986 889999999999999999999999999999999999
Q ss_pred EEecccccCCCCceEEEEEEEeeccCCccccCCCCCCCceEEeEEEEEEEEEeecCCCeEEEEEEEEEEEeeecCCCCc-
Q 005510 428 NYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGNP- 506 (693)
Q Consensus 428 sy~~P~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~l~~~l~~~~~~~~gl~~~~~~~~~~~~~~- 506 (693)
+|+.||+..++ +++++++++++++... .......|+..+.|+++++++|++++++++++|.+.+..+......+
T Consensus 468 ~ft~P~f~~~~--~slg~~~f~~~~~~~~---~~~~~~~y~~~~~G~~~~lg~pi~e~~~~~~~y~~~~~~~~~~~~~~~ 542 (766)
T COG4775 468 SFTDPYFLDDR--VSLGFNLFSNRYDTFD---ADTANDSYRVKTYGGGVSLGRPITENLSLGLGYGYEQNSLSLLNKSPP 542 (766)
T ss_pred EEecccccCCC--ceeEEEeEeeeecccc---cccccccceEeeccceEEecccccCCceEEEEEEEEEEEeeccccCcc
Confidence 99999998755 7899999888764110 00112378899999999999999999999999999998776332111
Q ss_pred ------cc------ccccCCceeeecccCCceeEEEEEEEecCCCCCCCceEEEEeeecCCcCCCcceeEEEEEEEEEeE
Q 005510 507 ------II------KDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGV 574 (693)
Q Consensus 507 ------~~------~~~~~~~l~~~~d~rD~~~~P~~g~~~~~~G~~g~~~~~~~~~~~~~~~~~~~~f~k~~~~~~~y~ 574 (693)
.. ......+++++||++|+.++|+ +|+. .+...+.+.+ +++..|+|+++++++|+
T Consensus 543 ~~~~~~~~~~~~~~~~~~~~s~~~tyD~rD~~~~Pt-------~G~~----~~~~~e~~~~--Ggd~~~~K~~~~~~~Y~ 609 (766)
T COG4775 543 DEYASLGVKLQGGKSDLSSLSLGWTYDTRDNALFPT-------KGSY----LSLTQEVAGL--GGDIKYYKLELDGSKYY 609 (766)
T ss_pred ccccccccccccCcceeEEEEEeEEEcCCCCcCCCC-------CCeE----EeeeeEEecc--CCcceEEEEEEEEEEEE
Confidence 00 1123467789999999999998 5532 3445555544 37899999999999999
Q ss_pred EecCc--eEEEEEeeceecc----CCCccCceecCCCCCccCCcCCCccc---------cceEEEEeEEEEEecCC----
Q 005510 575 EIGPA--RLLLSLSGGHVVG----NFSPHEAFAIGGTNSVRGYEEGAVGS---------GRSYVVGSGEISFPMLG---- 635 (693)
Q Consensus 575 ~l~~~--~l~~~~~~G~~~g----~lp~~e~F~lGG~~svRGy~~~~lg~---------G~~~~~~s~Elr~pl~~---- 635 (693)
|+.+. ++.++..+|+..+ .+|++|+|++||.++||||+.+.+|| |+.++.+++||+||++.
T Consensus 610 ~l~~~~~~l~~~~~~g~~~~~g~~~~p~~e~F~~GG~~svRGf~~~~igp~~~~~~~~GG~~~~~~S~El~fPl~~~~~~ 689 (766)
T COG4775 610 PLTDYIFTLSLRGEVGYGKGYGTKLLPIYERFYLGGSNSVRGFESGGLGPKDGYTDALGGTSYFVASAELRFPLPKVIGS 689 (766)
T ss_pred EcccccEEEEEEEEEEEeeccCCcccccccceeeCCCccccceecCCcCCccccccccCceEEEEEEEEEEeecCCCCCc
Confidence 99864 4556666666542 48999999999999999999999998 99999999999999986
Q ss_pred ceeEEEEEEeeecCCCC---C---CCCCCCCCcCccceeEEEEEecCCCCcccceeecccccc
Q 005510 636 PVEGVIFSDYGTDLGSG---P---SVPGGFLYDWPHVSYAFKVCSLPPPPRLQPYFVYLFCFI 692 (693)
Q Consensus 636 ~l~~~~F~D~G~v~~~~---~---~~~~~~~~~~~s~G~Glr~~tpiGPi~~dir~dy~~~~~ 692 (693)
.+++++|+|+|.+|+.+ . ...+.-..++.|+|+|++|.+|+||+ +|||||++.
T Consensus 690 ~~r~~lF~D~G~v~~~~~~~~~~~~~~~~~~~~r~S~Gvgl~w~sP~gPl----r~d~a~pi~ 748 (766)
T COG4775 690 GVRGALFFDAGSVWNTGTDPSTVRNFYGSGSELRASAGVGLRWASPLGPL----RFDYAFPIK 748 (766)
T ss_pred ceEEEEEEEcccccccCcccccccCCcCcCcceeEEeeeeEEEecCCCcE----EEEeecccc
Confidence 27899999999999965 1 11111113578899999999999986 788887764
No 3
>TIGR00992 3a0901s03IAP75 chloroplast envelope protein translocase, IAP75 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the TOC IAP75 protein.
Probab=100.00 E-value=1.3e-65 Score=593.88 Aligned_cols=520 Identities=23% Similarity=0.347 Sum_probs=427.5
Q ss_pred eEEEEEEEeCCCCccChhhHHHHHHHHhhccCCCCccCHHHHHHHHHHHHHcCccceEeEEEEecCCcEEEEEEEeeCCc
Q 005510 138 LISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEPNQE 217 (693)
Q Consensus 138 ~I~~I~i~G~~N~~i~~~~l~~~~~~~l~~~~~g~~~~~~~l~~d~~~L~~~GYf~a~v~~~~~~~~~v~l~~~V~EG~~ 217 (693)
.|++|.+.|. +..|+..+.++| .+++|..+++..+++|+++|++.|||..+-....+++.+|+|+|+|+|+|.
T Consensus 109 l~~e~~~~~~------~~~~~~~~~~~~-~~~~G~~~t~~~~~~d~~~i~~tG~F~~V~~~~~~~~~Gv~v~~~V~enP~ 181 (718)
T TIGR00992 109 LQKELEVLAT------CGMFEKVDYEGK-TTQDGRLGTTISFAESVWAIADRFRCINVGLMPQSKPLEMDVDMEVKEKPE 181 (718)
T ss_pred eeeeeeeecC------cHHHHHHHhhcc-ccCCCCcccHHHHHHHHHHHHHcEEeeeeEEeeccCCCceEEEEEEecCCE
Confidence 8999999993 234777666666 699999999999999999999999998766655678899999999999999
Q ss_pred eEE-EEEEc--------CcCCChhHHHHhhccCCC-CcccHHHHHHHHHHHHHHHHhCCc-eeEeeeEEEeeCcEEEEEE
Q 005510 218 FHG-LVCEG--------ANVLPTKFVEDAFRDGYG-KVVNIRRLDEVITSINGWYMERGL-FGMVSGVEILSGGIIRLQV 286 (693)
Q Consensus 218 i~~-I~~~G--------n~~~~~~~L~~~~~~~~G-~~~~~~~l~~~~~~I~~~Y~~~GY-~a~V~~~~~~~~g~v~~~I 286 (693)
+++ |+|+| +.++|.++|++++..+.| ++++...|++++++|+++|+++|| +|+|........++|+|.|
T Consensus 182 ~~~~v~~~g~~~~~~~~~~~lp~~~l~e~~~~~~G~~~ln~~~L~~~~~~I~~~Y~~~GY~~A~V~~~~~~~~~~V~l~V 261 (718)
T TIGR00992 182 FTRRLEIRYKRRIAEARPCLLPQEVVDETFGMLYGQGIVSARLLQEIRDRVQEWYHNEGYACAQVVNFGNLNTDEVVCEV 261 (718)
T ss_pred EEEEEEEeecccccccccccCCHHHHHHHhccccCCeecCHHHHHHHHHHHHHHHHHCCceeEEEeccCcCCCCEEEEEE
Confidence 997 99974 456889999999999999 999999999999999999999999 8998865434445899999
Q ss_pred EEEEEEeEEEEEccccCCCCCcCCCCHHHHHhhcc--cCCCCccchHhHHHHHHHHHhCCCcccceeeeecCC-CCCeEE
Q 005510 287 AEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLT--TKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAG-DTGKVD 363 (693)
Q Consensus 287 ~eg~I~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l~--l~~G~~~~~~~l~~~~~~L~~lg~F~~V~i~~~~~~-~~~~v~ 363 (693)
.||+|.+|.|+..+. .||+...++++.+|+|+++ +++|++||.++|++++++|+++++|++|++.+.|.. .++.++
T Consensus 262 ~EG~i~~I~V~~i~~-~Gn~~~G~T~~~vI~Rel~~~lk~G~~fn~~~Le~~~~rL~~lg~F~~V~V~~~p~~~~~g~v~ 340 (718)
T TIGR00992 262 VEGDITNLQIQFFDK-LGNVVEGNTRDPVVTRELPKQLKPGDVFNIEAGKTALQNINSLGLFSNIEVNPRPDEMNEGEII 340 (718)
T ss_pred eccceeEEEEEEecc-cCccccCccchHHHHHHHHhccCCCCcCCHHHHHHHHHHHHcCCCcccceeeccCCCCCCCeEE
Confidence 999999998864332 2663335789999999999 999999999999999999999999999999998875 789999
Q ss_pred EEEEEEEcCCc--------eEEEeEe---eecCcCCCCCcceEEEEEEeecccCcCCeEEEEEEEec-----ceeeEEEE
Q 005510 364 LIMNVVERPSG--------GFSAGGG---ISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERG-----QIDSIFRI 427 (693)
Q Consensus 364 l~i~V~E~~~~--------~~~~g~g---yss~~~~g~~~g~~~~~~~~~~NlfG~G~~l~l~~~~g-----~~~~~~~l 427 (693)
|.|+|+|++++ ++.+|+| |++. .|+.+.++|+++||||.|++|+++++.+ +..+.+.+
T Consensus 341 V~V~V~E~~~~s~~~~~~~s~~~G~Gg~~~ss~------~G~~g~i~~~~rNl~G~g~~l~~~~~~s~~~~~~~~~~~~l 414 (718)
T TIGR00992 341 VEIKLKELEQKSAEVSTEWSIVPGRGGRPTLAS------SQPGGTITFEHRNLQGLNRSLGGSVTTSNFLNPQDDLLFKV 414 (718)
T ss_pred EEEEEEECCCCceeeeccccccccCCCcccccc------cceeEEeeEEeccCcccCcEEEEEEEeccccCCCcceEEEE
Confidence 99999999998 6666666 6654 7899999999999999999999999998 77889999
Q ss_pred EEecccccCC--CCceEEEEEEEeeccCCccccCC--CCCCCceEEeEEEEEEEEEeecCCCeEEEEEE------EEEEE
Q 005510 428 NYTDPWIEGD--DKRTSRTIMVQNSRTPGTHVHGN--QPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGL------IFQHS 497 (693)
Q Consensus 428 sy~~P~~~~~--~~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~l~~~l~~~~~~~~gl------~~~~~ 497 (693)
+|++||+.+. +.+.++.+++++++.....+... ......|..++.++++++++++.+++.+..++ .|+..
T Consensus 415 sy~~P~i~~~~~p~~~s~~~~~f~~~~~~~~~~~~~~~~~~~~y~~~r~G~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~ 494 (718)
T TIGR00992 415 EYTHPYLDGVDNPRNRTYTASCFNSRKLSPVFTGGPGVNEVPSIWVDRAGVKANITENFARQSKFTYGLVMEEIFTRDES 494 (718)
T ss_pred EEecCccCCCCCCccceEEEEEEEeccccccccCCcccccCCCceEEEEEEEEEEeeccCcccccccCeEEEEEeeeeee
Confidence 9999999875 44578888887776543221111 01234688899999999999998765544444 44443
Q ss_pred eeecCCCCcc-------------------cccccCCceeeecccCCceeEEEEEEEecCCCCCCCceEEEEeeecCCcCC
Q 005510 498 GARDEKGNPI-------------------IKDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWP 558 (693)
Q Consensus 498 ~~~~~~~~~~-------------------~~~~~~~~l~~~~d~rD~~~~P~~g~~~~~~G~~g~~~~~~~~~~~~~~~~ 558 (693)
+..+..+... ......+.++++||++|++++|+ .|++ +.++++++.+.++
T Consensus 495 ~~~~~~g~~~~~~~~~~~~g~~~t~s~~~~~~l~~l~~~~t~D~rDn~l~Pt-------~G~~----~~~~~e~~~~~g~ 563 (718)
T TIGR00992 495 RHINANGQRSLPSGPISADGPPTTLSGTGVDRMAFLQANITRDNTNFVNGPT-------VGSR----VRFQVDQGLGVGS 563 (718)
T ss_pred eeccccCccccccccccccCCcceecCCCccceEEEEEEEEEecCCCCCCCC-------cccE----EEEEEEeccCcCC
Confidence 3322211100 01234467789999999999997 6642 6788888877554
Q ss_pred CcceeEEEEEEEEEeEEecC----------ceEEEEEeeceeccCCCccCceecCCCCCccCCcCCCccccceEEEEeEE
Q 005510 559 EWLFFNRVNARARKGVEIGP----------ARLLLSLSGGHVVGNFSPHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGE 628 (693)
Q Consensus 559 ~~~~f~k~~~~~~~y~~l~~----------~~l~~~~~~G~~~g~lp~~e~F~lGG~~svRGy~~~~lg~G~~~~~~s~E 628 (693)
....|.|+.+++++|+|+.. .+|++++.+|++.+++|++++|++||.+|||||.+++++||++++.+++|
T Consensus 564 ~~~~f~r~~~~~~~y~pl~~~~~~~~~~~~~vla~r~~~G~~~gdlP~~e~F~lGG~~SVRGY~~~~lGpGr~~~~~s~E 643 (718)
T TIGR00992 564 GFPFFNRHQLTYTKFIQLNWVELGAGKSPPPVLVLHGHYGGCVGDLPSYDAFILGGPYSVRGYNMGELGAARNIFEATAE 643 (718)
T ss_pred CCceEEEEEEEEEEEEeccccccccccCCCcEEEEEEEeeeEcCCCCchhceecCCCCcccCccCCcccccceeeEEEEE
Confidence 44479999999999999852 47899999999889999999999999999999999999999999999999
Q ss_pred EEEecCCceeEEEEEEeeecCCCCCCCCCCC------CCcCccceeEEEEEecCCCCcccc
Q 005510 629 ISFPMLGPVEGVIFSDYGTDLGSGPSVPGGF------LYDWPHVSYAFKVCSLPPPPRLQP 683 (693)
Q Consensus 629 lr~pl~~~l~~~~F~D~G~v~~~~~~~~~~~------~~~~~s~G~Glr~~tpiGPi~~di 683 (693)
||||+...+ +++|+|+|++|+...+++++| ..+++|+|+|+||.||+||+|+|+
T Consensus 644 ~r~Pi~~~~-g~~F~D~G~~~~s~~~~~g~~~~~~~~~~~~~s~GvGvR~~sPiGPiRlD~ 703 (718)
T TIGR00992 644 IRIPIKATH-VYAFVEHGSDLGSSKDVKGNPTIVYRRPGQGSSYGAGVKLGLVRAEYAVDH 703 (718)
T ss_pred EEEEecCcc-EEEEEecccccCcccccCCCccccccCCCCccceeEEEEEecCcccEEEEe
Confidence 999999888 999999999998865554433 235789999999999999987775
No 4
>PRK11067 outer membrane protein assembly factor YaeT; Provisional
Probab=100.00 E-value=3.2e-62 Score=582.68 Aligned_cols=517 Identities=18% Similarity=0.222 Sum_probs=423.9
Q ss_pred ccCccccceEEEEEEEeCCCCccChhhHHHHHHHHhhccC---------CCCccCHHHHHHHHHHHH----HcCccceEe
Q 005510 130 SRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACR---------ANSALTVREVQEDVHRII----DSGYFCSCM 196 (693)
Q Consensus 130 ~~~~~e~~~I~~I~i~G~~N~~i~~~~l~~~~~~~l~~~~---------~g~~~~~~~l~~d~~~L~----~~GYf~a~v 196 (693)
.|+||++++|++|+|+| |+.+++++|++.+ .++ .++.|+++++++|+++|. ++||++++|
T Consensus 168 ~i~EG~~~~I~~I~f~G--N~~~~~~~L~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~d~~~l~~~Y~~~Gy~~a~V 240 (803)
T PRK11067 168 VFTEGVSAKIQQINIVG--NHAFSTDELISRF-----QLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNI 240 (803)
T ss_pred EEecCCeEEEEEEEEEC--CCCcCHHHHHHHh-----cCCCCcchhhhccCCccCHHHHhhhHHHHHHHHHHCCCceEEe
Confidence 77888899999999999 9999999999755 344 348899999999999985 789999999
Q ss_pred EEE---E-ecCCcEEEEEEEeeCCceE--EEEEEcCcCCChhHHHHhhccCCCCcccHHHHHHHHHHHHHHHHhCCc-ee
Q 005510 197 PVA---V-DTRDGIRLVFQVEPNQEFH--GLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGL-FG 269 (693)
Q Consensus 197 ~~~---~-~~~~~v~l~~~V~EG~~i~--~I~~~Gn~~~~~~~L~~~~~~~~G~~~~~~~l~~~~~~I~~~Y~~~GY-~a 269 (693)
... + .+++.+.|+|.|+||++++ +|.|+|+..+++++|++.+.+++|++|+...+++++++|.++|+++|| ++
T Consensus 241 ~~~~~~~~~~~~~v~i~~~I~eG~~~~i~~i~~~G~~~~~~~~l~~~~~~k~G~~~~~~~~~~~~~~i~~~~~~~GY~~a 320 (803)
T PRK11067 241 DSTQVSLTPDKKGIYITVNITEGDQYKLSGVQVSGNLAGHSAEIEKLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYP 320 (803)
T ss_pred cCcEEEEcCCCceEEEEEEEeeCCcEEEEEEEEEecCCCCHHHHHHhhcCCCCceeCHHHHHHHHHHHHHHHHhCCCCcc
Confidence 643 2 2445799999999999866 999999999999999999999999999999999999999999999999 78
Q ss_pred EeeeEEE--eeCcE--EEEEEEEE---EEEeEEEEEccccCCCCCcCCCCHHHHHhhcccCCCCccchHhHHHHHHHHHh
Q 005510 270 MVSGVEI--LSGGI--IRLQVAEA---EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLT 342 (693)
Q Consensus 270 ~V~~~~~--~~~g~--v~~~I~eg---~I~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l~l~~G~~~~~~~l~~~~~~L~~ 342 (693)
+|.+... .+++. |++.|.|| +|++|.|. |+ .++++++|++++.+++|++|+.+++++++++|.+
T Consensus 321 ~v~~~~~~~~~~~~v~i~~~v~eG~~y~ig~I~i~------Gn---~~~~~~~l~r~l~~~~G~~~~~~~l~~~~~~L~~ 391 (803)
T PRK11067 321 RVQTQPEINDADKTVKLHVNVDAGNRFYVRKIRFE------GN---DTSKDAVLRREMRQMEGAWLGSDLVEQGKERLNR 391 (803)
T ss_pred eeeeccccCCCCCEEEEEEEEeeCCeEEEEEEEEE------CC---ccccchhhhhheeccccccCCHHHHHHHHHHHHh
Confidence 8864322 23343 78899987 79999999 98 5899999999999999999999999999999999
Q ss_pred CCCcccceeeeecC-CCCCeEEEEEEEEEcCCceEEEeEeeecCcCCCCCcceEEEEEEeecccCcCCeEEEEEEEecce
Q 005510 343 MGIMEDVSIIPQPA-GDTGKVDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQI 421 (693)
Q Consensus 343 lg~F~~V~i~~~~~-~~~~~v~l~i~V~E~~~~~~~~g~gyss~~~~g~~~g~~~~~~~~~~NlfG~G~~l~l~~~~g~~ 421 (693)
+|+|+.|.+.+.+. ..++.++|++.|+|++++.+.+|+||+++ .|+.+.++++++|+||.|+++++.++.+..
T Consensus 392 ~g~F~~V~~~~~~~~~~~~~v~l~v~v~e~~~~~~~~g~gy~s~------~g~~~~~~~~~~N~~G~G~~l~l~~~~s~~ 465 (803)
T PRK11067 392 LGFFETVDVDTQRVPGSPDQVDVVYKVKERNTGSFNFGVGYGTE------SGVSFQAGVQQDNWLGTGNSVGINGTKNDY 465 (803)
T ss_pred cCCcccCccccccCCCCCCeEEEEEEEEEccCCcEEEEeeecCc------CCEEEEEEEEecccCCcCcEEEEEEEeccc
Confidence 99999999888654 34679999999999999999999999986 788999999999999999999999999988
Q ss_pred eeEEEEEEecccccCCCCceEEEEEEEeeccCCccccCCCCCCCceEEeEEEEEEEEEeecCCCeEEEEEEEEEEEeeec
Q 005510 422 DSIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARD 501 (693)
Q Consensus 422 ~~~~~lsy~~P~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~l~~~l~~~~~~~~gl~~~~~~~~~ 501 (693)
.+.+.++|+.||+...+ ++++.++++...... ......|..++.++++.+++|+.+.+++.+++.+++.++.+
T Consensus 466 ~~~~~l~~~~P~~~~~~--~~~~~~~~~~~~~~~-----~~~~~~y~~~~~g~~~~~~~~l~~~~~~~~g~~~~~~~~~~ 538 (803)
T PRK11067 466 QTYAELSVTDPYFTVDG--VSLGGRIFYNDFEAD-----DADLSDYTNKSYGTDVTLGFPINENNSLRAGLGYVHNSLSN 538 (803)
T ss_pred eEEEEEEEeCCcCcCCC--ceEEEEEEEEecccc-----ccccccceeeEEEEEEEEEEEecCceEEEEEEEEEEEEeec
Confidence 88999999999987655 566666655543211 11234688889999999999999999999999999887653
Q ss_pred CCCCc-----------c--------c-ccccCCceeeecccCCceeEEEEEEEecCCCCCCCceEEEEeeecCCcCCCcc
Q 005510 502 EKGNP-----------I--------I-KDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWL 561 (693)
Q Consensus 502 ~~~~~-----------~--------~-~~~~~~~l~~~~d~rD~~~~P~~g~~~~~~G~~g~~~~~~~~~~~~~~~~~~~ 561 (693)
..... . . .....+.+++++|++|+.++|+ .|+. +.++.+.+.+ +++.
T Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~~~~Pt-------~G~~----~~~~~~~~~~--gs~~ 605 (803)
T PRK11067 539 MQPQVAMWRYLYSMGENPSSDSDNSFKTDDFTFNYGWTYNNLDRGYFPT-------AGNR----VNLTGKVTIP--GSDN 605 (803)
T ss_pred CCcchhHHHHHHHcCCccccccccccceEEEEEEEEEEEecCcCCCCCC-------CCee----EEEEEEEEee--cccc
Confidence 21100 0 0 0123456788899999999998 5532 3344444332 4678
Q ss_pred eeEEEEEEEEEeEEecC-c--eEEEEEeeceecc----CCCccCceecCCCCCccCCcCCCccc----------------
Q 005510 562 FFNRVNARARKGVEIGP-A--RLLLSLSGGHVVG----NFSPHEAFAIGGTNSVRGYEEGAVGS---------------- 618 (693)
Q Consensus 562 ~f~k~~~~~~~y~~l~~-~--~l~~~~~~G~~~g----~lp~~e~F~lGG~~svRGy~~~~lg~---------------- 618 (693)
+|.|+.+++++|+|+.+ + ++.+++.+|++.+ ++|++++|++||.++||||+++++||
T Consensus 606 ~f~k~~~~~~~y~~l~~~~~~~l~~r~~~G~~~~~~~~~lP~~erF~lGG~~svRGy~~~siGp~~~~~~~~~~~~~~~~ 685 (803)
T PRK11067 606 EYYKVTLDTAQYVPLDDDHKWVLLGRGRLGYGDGLGGKEMPFYENFYAGGSSTVRGFQSNTIGPKAVYYPGQASNYTQDG 685 (803)
T ss_pred eEEEEEEEEEEEEEecCCCcEEEEEEEEeeeeecCCCCCCChhheeccCCCCcCCcccCCCcCCcccccccccccccccc
Confidence 99999999999999984 3 4566666666543 59999999999999999999877664
Q ss_pred ------------cceEEEEeEEEEEecC-------CceeEEEEEEeeecCCCCCC---------CCC--CCCCcCcccee
Q 005510 619 ------------GRSYVVGSGEISFPML-------GPVEGVIFSDYGTDLGSGPS---------VPG--GFLYDWPHVSY 668 (693)
Q Consensus 619 ------------G~~~~~~s~Elr~pl~-------~~l~~~~F~D~G~v~~~~~~---------~~~--~~~~~~~s~G~ 668 (693)
|+.++.+++|||+|++ ++|++++|+|+|++|+...+ .+. ++..+++|+|+
T Consensus 686 ~~~~~~~~~~iGG~~~~~~s~E~~~p~~~~~~~~~~~~~~~~F~D~G~~~~~~~~~~~~~~~~~~~~~~~~~~~r~s~G~ 765 (803)
T PRK11067 686 AKDLCKSDDAVGGNAMAVASLELITPTPFISDKYANSVRTSFFWDMGTVWDTNWDNTAYTRAAGYPDYSDPSNIRMSAGI 765 (803)
T ss_pred ccccCCCCCCCCCeEEEEEeEEEEEeCCccccccCCCEEEEEEEEeeecccCCcccccccccccccCcCCCCcEEEEEeE
Confidence 7799999999999953 47999999999999986311 011 23358999999
Q ss_pred EEEEEecCCCCcccceeecccccc
Q 005510 669 AFKVCSLPPPPRLQPYFVYLFCFI 692 (693)
Q Consensus 669 Glr~~tpiGPi~~dir~dy~~~~~ 692 (693)
|+||.||+||+ |||||++++
T Consensus 766 G~r~~sPiGPi----rld~a~pl~ 785 (803)
T PRK11067 766 ALQWMSPLGPL----VFSYAQPFK 785 (803)
T ss_pred EEEEeCCCCCe----EEEEEEeCC
Confidence 99999999986 678887765
No 5
>TIGR03303 OM_YaeT outer membrane protein assembly complex, YaeT protein. Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat.
Probab=100.00 E-value=5.7e-59 Score=551.74 Aligned_cols=522 Identities=20% Similarity=0.289 Sum_probs=432.2
Q ss_pred ccCccccceEEEEEEEeCCCCccChhhHHHHHHHHh----hccCCCCccCHHHHHHHHHHHH----HcCccceEeEE-E-
Q 005510 130 SRSDEERVLISEVLVRNKDGEELERKDLETEALTAL----KACRANSALTVREVQEDVHRII----DSGYFCSCMPV-A- 199 (693)
Q Consensus 130 ~~~~~e~~~I~~I~i~G~~N~~i~~~~l~~~~~~~l----~~~~~g~~~~~~~l~~d~~~L~----~~GYf~a~v~~-~- 199 (693)
.|+++++.+|.+|+|+| |+.+++++|++.+.... ..++.++.|+++.+++|+++|. ++||+++.|.. .
T Consensus 143 ~v~eg~~~~i~~i~~~G--n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~y~~~Gy~~a~v~~~~~ 220 (741)
T TIGR03303 143 NIKEGKKAKIKKINFVG--NKAFSDSELRDVFALKESNFWSWFTGDDKYSKQKLEADLELLRSFYLNRGYLDFKVESTQV 220 (741)
T ss_pred EEecCCEEEEEEEEEEC--CCcCCHHHHHHHHhcCcchhHHhccCCCeECHHHHhhhHHHHHHHHHhCCcEEEEEcCCEE
Confidence 77888888999999999 99999999987652111 1134578999999999999995 89999999862 2
Q ss_pred -E-ecCCcEEEEEEEeeCCceE--EEEEEcCcCCChhHHHHhhccCCCCcccHHHHHHHHHHHHHHHHhCCc-eeEeeeE
Q 005510 200 -V-DTRDGIRLVFQVEPNQEFH--GLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGL-FGMVSGV 274 (693)
Q Consensus 200 -~-~~~~~v~l~~~V~EG~~i~--~I~~~Gn~~~~~~~L~~~~~~~~G~~~~~~~l~~~~~~I~~~Y~~~GY-~a~V~~~ 274 (693)
+ .+++.+.|+|.|+||++++ +|.|+|+..+++++|++.+.+++|++|+...+++++++|.++|+++|| +++|.+.
T Consensus 221 ~~~~~~~~~~i~~~v~eG~~~~i~~i~i~g~~~~~~~~l~~~~~~~~G~~~~~~~~~~~~~~l~~~y~~~Gy~~~~v~~~ 300 (741)
T TIGR03303 221 SITPDKKGVYITYNIKEGEQYKFGEVTIEGDLIGPDEELKKLLKIKKGEVFNRSKVTKIVKAIKDLLGEKGYAFANVNPR 300 (741)
T ss_pred EECCCCCEEEEEEEeccCCCEEEEeEEEEeccCCcHHHHHHhhcCCCCCeeCHHHHHHHHHHHHHHHHhcCCceeEEEec
Confidence 2 2567899999999999966 999999999999999999999999999999999999999999999999 7888764
Q ss_pred EEe--eCc--EEEEEEEEE---EEEeEEEEEccccCCCCCcCCCCHHHHHhhcccCCCCccchHhHHHHHHHHHhCCCcc
Q 005510 275 EIL--SGG--IIRLQVAEA---EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIME 347 (693)
Q Consensus 275 ~~~--~~g--~v~~~I~eg---~I~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l~l~~G~~~~~~~l~~~~~~L~~lg~F~ 347 (693)
... +++ .|++.|.|| +|++|.|. |+ ..+++++|++++.+++|++|+.+++++++++|+++|+|+
T Consensus 301 ~~~~~~~~~v~v~~~v~eg~~~~i~~i~i~------g~---~~t~~~~i~~~~~~~~G~~~~~~~l~~~~~~L~~lg~f~ 371 (741)
T TIGR03303 301 PQINDENKTVDLTFKVDPGKRVYVRRINIS------GN---TRTRDEVIRRELRQLEGDWYSLSKIKRSKRRLERLGYFE 371 (741)
T ss_pred ceECCCCCEEEEEEEEccCCeEEEEEEEEE------CC---CccccceeehhhccCcccccCHHHHHHHHHHHHhCCCCc
Confidence 332 233 388999997 69999999 98 689999999999999999999999999999999999999
Q ss_pred cceeeeecCCCCCeEEEEEEEEEcCCceEEEeEeeecCcCCCCCcceEEEEEEeecccCcCCeEEEEEEEecceeeEEEE
Q 005510 348 DVSIIPQPAGDTGKVDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQIDSIFRI 427 (693)
Q Consensus 348 ~V~i~~~~~~~~~~v~l~i~V~E~~~~~~~~g~gyss~~~~g~~~g~~~~~~~~~~NlfG~G~~l~l~~~~g~~~~~~~l 427 (693)
.|.+.+.+...++.++|++.|+|++++.+.++++|++. .++.+.++++++|+||.|+.+++.+..+...+.+.+
T Consensus 372 ~v~~~~~~~~~~~~~~v~i~v~e~~~~~~~~~~g~~~~------~~~~~~~~~~~~Nl~G~g~~l~~~~~~~~~~~~~~~ 445 (741)
T TIGR03303 372 TVNIETVPVGSPDQVDLNVKVKEQPTGSISFGVGYGSS------SGLSFNASISERNFLGTGNRLSLSANKSSLSTSYSL 445 (741)
T ss_pred eeeeeecCCCCCCEEEEEEEEEEccccEEEEeeeecCC------CceEEEEEEEEecccccccEEEEEEEeccceEEEEE
Confidence 99999888767899999999999999999999999875 789999999999999999999999999988788999
Q ss_pred EEecccccCCCCceEEEEEEEeeccCCccccCCCCCCCceEEeEEEEEEEEEeecCCCeEEEEEEEEEEEeeecCCCCc-
Q 005510 428 NYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGNP- 506 (693)
Q Consensus 428 sy~~P~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~l~~~l~~~~~~~~gl~~~~~~~~~~~~~~- 506 (693)
+|+.||+.+.+ +.+++++++++.+.. ......|..++.++++.+++++.+++.+++++++++.++.+.....
T Consensus 446 ~~~~P~~~~~~--~~~~~~~~~~~~~~~-----~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (741)
T TIGR03303 446 SFTDPYFTDDG--VSLGFSIFYSETDRN-----YKNFSDYKTKTYGGSINLGYPITEYLRVSLGYGYEQNKIKNSSDSDS 518 (741)
T ss_pred EEECCCCcCCC--eEEEEEEEEEEcccc-----cccccCceeEEEEEEEEEEEEecCceEEEEEEEEEEEEEecCCCcch
Confidence 99999988755 566666666554311 0123457888899999999999999999999999988776422110
Q ss_pred ----cc------ccccCCceeeecccCCceeEEEEEEEecCCCCCCCceEEEEeeecCCcCCCcceeEEEEEEEEEeEEe
Q 005510 507 ----II------KDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGVEI 576 (693)
Q Consensus 507 ----~~------~~~~~~~l~~~~d~rD~~~~P~~g~~~~~~G~~g~~~~~~~~~~~~~~~~~~~~f~k~~~~~~~y~~l 576 (693)
.. ....+..++++||++|+.++|+ .|+. +.+..+.+. .+++.+|.|+.+++++|+++
T Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~d~rD~~~~P~-------~G~~----~~~~~~~~~--~g~~~~f~k~~~~~~~y~~l 585 (741)
T TIGR03303 519 SASYFIKEQGGKFIDSSLSYGWSYDTLDSGYFPT-------KGSI----QRLSQEFAG--PGGDLKYYKLTYDSEYYIPL 585 (741)
T ss_pred hHHHHHHHhCCceEEEEEEEEEEEeCCcCCCCCC-------CCcE----EEEEEEEee--ecCCceEEEEEEEEEEEEEc
Confidence 00 1123566788999999999998 4531 344444432 24578999999999999999
Q ss_pred cC---ceEEEEEeeceecc----CCCccCceecCCCCCccCCcCCCccc-----------cceEEEEeEEEEEecC----
Q 005510 577 GP---ARLLLSLSGGHVVG----NFSPHEAFAIGGTNSVRGYEEGAVGS-----------GRSYVVGSGEISFPML---- 634 (693)
Q Consensus 577 ~~---~~l~~~~~~G~~~g----~lp~~e~F~lGG~~svRGy~~~~lg~-----------G~~~~~~s~Elr~pl~---- 634 (693)
.+ .+|++++.+|++.+ ++|++++|++||.++||||..++++| |+.++.+++|||+|++
T Consensus 586 ~~~~~~~l~~~~~~g~~~~~~~~~~p~~e~f~lGG~~svRGy~~~~igp~~~~~~~~~~gG~~~~~~~~Elr~pl~~~~~ 665 (741)
T TIGR03303 586 SKEDDWVLSLRGRLGYGNGYGGKDLPFYERFYAGGIGSVRGFESNGIGPRDINDSGDSIGGNAMATANVELIFPLPFLPE 665 (741)
T ss_pred CCCCcEEEEEEEEeeEEEcCCCCccChhHeEecCCCCcCCCccCCCcCCCccCCCCCCCCceEEEEEEEEEEEcCCCCCc
Confidence 87 57888888888752 69999999999999999999998875 8999999999999995
Q ss_pred -CceeEEEEEEeeecCCCCCCC---CCCCCCcCccceeEEEEEecCCCCcccceeecccccc
Q 005510 635 -GPVEGVIFSDYGTDLGSGPSV---PGGFLYDWPHVSYAFKVCSLPPPPRLQPYFVYLFCFI 692 (693)
Q Consensus 635 -~~l~~~~F~D~G~v~~~~~~~---~~~~~~~~~s~G~Glr~~tpiGPi~~dir~dy~~~~~ 692 (693)
.++++++|+|+|+||....+. ..+...++.|+|+|+||.+|+||+ +||||+++.
T Consensus 666 ~~~~~~~~F~D~G~v~~~~~~~~~~~~~~~~~~~s~G~Glr~~tp~gpi----~ld~a~~l~ 723 (741)
T TIGR03303 666 DNGLRGSVFFDAGNVWGTDQKKEGDYSDDSSLRASVGVGLRWISPMGPL----RFSYAKPLK 723 (741)
T ss_pred cCcEEEEEEEEeeecccCCcccccccCCCCcEEEEEEEEEEEECCcCcE----EEEEEEeCC
Confidence 259999999999999875320 112334789999999999999976 677777664
No 6
>COG0729 Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.6e-38 Score=354.06 Aligned_cols=458 Identities=19% Similarity=0.213 Sum_probs=331.7
Q ss_pred HcCccceEeEEEEe---cCCcEEEEEEEeeCCceE----EEEEEcCcCCChhHHHHh---hccCCCCcccHHHHHHHHHH
Q 005510 188 DSGYFCSCMPVAVD---TRDGIRLVFQVEPNQEFH----GLVCEGANVLPTKFVEDA---FRDGYGKVVNIRRLDEVITS 257 (693)
Q Consensus 188 ~~GYf~a~v~~~~~---~~~~v~l~~~V~EG~~i~----~I~~~Gn~~~~~~~L~~~---~~~~~G~~~~~~~l~~~~~~ 257 (693)
..||+.+.+.+.+. ....-.++.+|++|++.+ .+.+.| ..+.+.+++.. ...+.|.++++..++..+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~pg~~~~i~~~~~v~~G-~a~~d~~~~~~~~~~~~~~G~~~~~~~~~n~k~~ 159 (594)
T COG0729 81 ALGYLQPKGRFGGKVSVTEKRGKLIAKVTPGEPTPIAVVIVVLPG-PAFTDGDYRLLGDAAGPKEGEDLNQGTYENAKSS 159 (594)
T ss_pred hhceecceeeecccccccccccceeeecCCCCCcccceeeeeccc-ccccChhhhhhhhhhccccCCccccchhhhhHHH
Confidence 57888888765542 224456788888888743 556678 44444444332 34668999999999999999
Q ss_pred HHHHHHhCCc-eeEeeeEEEe---eCcE--EEEEEEEE---EEEeEEEEEccccCCCCCcCCCCHHHHHhhcccCCCCcc
Q 005510 258 INGWYMERGL-FGMVSGVEIL---SGGI--IRLQVAEA---EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVY 328 (693)
Q Consensus 258 I~~~Y~~~GY-~a~V~~~~~~---~~g~--v~~~I~eg---~I~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l~l~~G~~~ 328 (693)
|.+...++|| .+++...+.. .... +++.++-| .++.|.++ |. .+++++.|++.+++++|++|
T Consensus 160 i~~~~~~~gy~~a~~~~~r~~v~~~~~~a~~~~~~dsG~~y~~g~v~~~------g~---~r~~~~~~~~~~~~~~G~~Y 230 (594)
T COG0729 160 IVRALLRKGYFLARFTKSRLVVDPATHTADVDLNYDSGRRYRFGPVTVE------GS---QRIDEEYLQNLVPFKYGLPY 230 (594)
T ss_pred HHHHHHHcCcchhcccccccccccccceEEEEEeecccceEEeCcEEEc------cc---eecCHHHHhhccccCCCCcC
Confidence 9999999999 5877643321 1223 55555544 78999999 77 57999999999999999999
Q ss_pred chHhHHHHHHHHHhCCCcccceeeeecC--CCCCeEEEEEEEEEcCCceEEEeEeeecCcCCCCCcceEEEEEEeecccC
Q 005510 329 SMLQGKRDVETVLTMGIMEDVSIIPQPA--GDTGKVDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVF 406 (693)
Q Consensus 329 ~~~~l~~~~~~L~~lg~F~~V~i~~~~~--~~~~~v~l~i~V~E~~~~~~~~g~gyss~~~~g~~~g~~~~~~~~~~Nlf 406 (693)
..+++++..++|.++++|++|.|++... ..++.++|.+.+.|++...+.+|+||+++ .|..+++.|.++|+|
T Consensus 231 ~~~~l~~~~~rl~~~~~F~sv~v~~~~~~~~~~~~~pv~v~~~~rk~~~~~lG~gyst~------~G~~~~~~w~~~~~~ 304 (594)
T COG0729 231 DPEDLAELNQRLRQTGYFSSVVVQPADKQAGPDGLLPVKVSVSERKENTFELGVGYSTD------VGAGLEAGWEKRNLF 304 (594)
T ss_pred CHHHHHHHHHHHhhcCceeeEEEecCccccCcCceeceEEEecccccceEEeeeEEecc------ccccceEEeeeeccc
Confidence 9999999999999999999999988755 44566899999999999999999999986 889999999999999
Q ss_pred cCCeEEEEEEEecceeeEEEEEEecccccCCCCceEEEEEEEeeccCCccccCCCCCCCceEEeEEEEEEEEEeecCCCe
Q 005510 407 GRNQKLNISLERGQIDSIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKW 486 (693)
Q Consensus 407 G~G~~l~l~~~~g~~~~~~~lsy~~P~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~l~~~l~~~~ 486 (693)
|+||.+.....++...+.....|..|.+.... .....++.++...+.. ......+. ..+++..++.....|
T Consensus 305 ~~~~~l~~~~~is~~~~~~~~~y~~p~~~~~~-~~~~~~~~~~~~~~~~-----~t~~~~~~---~~l~~~~~~~~~~~~ 375 (594)
T COG0729 305 GRGHSLRIESEISAPLQTLEATYKAPLLFNPL-GQYNPVSAGFDRLDLY-----DTESDAYT---ESLSASRGWDASLGW 375 (594)
T ss_pred CcceeEeeeeeeccchhcCceEEEeecccCCc-cceeccccccccchhh-----cccccccc---ceeeeeehhccccCc
Confidence 99999999999998878899999999987641 1223333333222110 00111121 223444444445556
Q ss_pred EEEEEEEEEEEeee--cCCCCcccccccCCceeeecccCCceeEEEEEEEecCCCCCCCceEEEEeeecCCcCCCcceeE
Q 005510 487 SGTVGLIFQHSGAR--DEKGNPIIKDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFN 564 (693)
Q Consensus 487 ~~~~gl~~~~~~~~--~~~~~~~~~~~~~~~l~~~~d~rD~~~~P~~g~~~~~~G~~g~~~~~~~~~~~~~~~~~~~~f~ 564 (693)
...+++++...... +..+. ...-..+..+++.+|+ |+.++|+ .|+. +......+...+.++..|.
T Consensus 376 ~~~~~~r~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~-dd~~~Pt-------~G~~----~~~~~~~s~~~~~s~~~~~ 442 (594)
T COG0729 376 QRSLALRFSYDNFRQGDISGK-TSLLTPGVEFSYTRDT-DDGLFPT-------WGDR----LDLTIGPSYEALGSDVDFR 442 (594)
T ss_pred eeEEEEEEEccccccccccCC-ceEEecceEEEEEEcc-CCCCCCC-------ccce----eeeeeeeccccccCchHHh
Confidence 55555555554421 11111 1111234555666777 9999998 4431 3444444444455555444
Q ss_pred EEEEEEEEeEEec-C-ceEEEEEeeceecc----CCCccCceecCCCCCccCCcCCCccc---------cceEEEEeEEE
Q 005510 565 RVNARARKGVEIG-P-ARLLLSLSGGHVVG----NFSPHEAFAIGGTNSVRGYEEGAVGS---------GRSYVVGSGEI 629 (693)
Q Consensus 565 k~~~~~~~y~~l~-~-~~l~~~~~~G~~~g----~lp~~e~F~lGG~~svRGy~~~~lg~---------G~~~~~~s~El 629 (693)
.+. ..+.|+++. . +.++.++.+|++.+ ++|++.+|++||..+||||.+++|+| |..++..++||
T Consensus 443 ~~~-~~~~~~~~~~~~~~~~~R~~~G~il~~~~~~vPps~rFfaGG~~svRGY~y~sI~p~~~~g~~~Gg~~l~~~s~Ey 521 (594)
T COG0729 443 LVQ-ARSGYLRTGGADHRLAGRGELGAILTGDLDDVPPSLRFFAGGDRSVRGYGYQSIGPQDANGDLLGGRSLVTGSLEY 521 (594)
T ss_pred hhh-ccceeeecCccceEEEEecccceEeeCccccCCccceeecCCCcceeccccccccCcCCCCCcccceEEEEeeEEE
Confidence 444 444445554 3 35777888888875 59999999999999999999999985 67999999999
Q ss_pred EEecCCceeEEEEEEeeecCCCCCCCCCCCCCcCccceeEEEEEecCCCCcccceeeccccc
Q 005510 630 SFPMLGPVEGVIFSDYGTDLGSGPSVPGGFLYDWPHVSYAFKVCSLPPPPRLQPYFVYLFCF 691 (693)
Q Consensus 630 r~pl~~~l~~~~F~D~G~v~~~~~~~~~~~~~~~~s~G~Glr~~tpiGPi~~dir~dy~~~~ 691 (693)
||++..+|++++|+|+|.+|++.... ...++.|+|+|+||.||+|||+ ||+|+++
T Consensus 522 ~~~~t~~~~~a~FvD~G~a~n~~~~~---~~d~k~G~Gigvr~~SPvGPIr----~DiA~pl 576 (594)
T COG0729 522 QYLVTDPWGLAVFVDAGSAGNNFTRL---FSDLKKGAGIGVRWDSPVGPIR----FDIAVPL 576 (594)
T ss_pred EEeccCcEEEEEEEEccccccCCchh---hhhhhccceeeEeecCCcCCeE----EEeeccc
Confidence 99999999999999999999986431 1348999999999999999975 5555544
No 7
>COG2831 FhaC Hemolysin activation/secretion protein [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.1e-35 Score=331.36 Aligned_cols=437 Identities=17% Similarity=0.198 Sum_probs=330.3
Q ss_pred eEEEEEEcCcCCChhHHHHhhccCCCCcccHHHHHHHHHHHHHHHHhCCc-eeEee-eEEEeeCcEEEEEEEEEEEEeEE
Q 005510 218 FHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGL-FGMVS-GVEILSGGIIRLQVAEAEVNNIS 295 (693)
Q Consensus 218 i~~I~~~Gn~~~~~~~L~~~~~~~~G~~~~~~~l~~~~~~I~~~Y~~~GY-~a~V~-~~~~~~~g~v~~~I~eg~I~~I~ 295 (693)
|++|.++|+..++..+|++++....|++++...|...+++|+++|.++|| .++|. |.+.+.+|+|.|+|.||+|++|+
T Consensus 75 I~~i~l~g~~~~~~~~l~~~~~~~~g~~l~~~~l~~l~~~lt~~y~~~GYvtsra~lp~Q~i~~G~l~l~VveG~i~~i~ 154 (554)
T COG2831 75 INRIELEGNTLLDALELQAILAPYLGRCLGLADLNQLASALTNLYIDRGYVTTRALLPPQDLKSGTLRLQVVEGRIEDIR 154 (554)
T ss_pred EEEEEEeCCcccChHHHHHhhHHhhCCccCHHHHHHHHHHHHHHHHhCCcEEEEEEcCCCcccCCeEEEEEeceEeeeEE
Confidence 45899999999999999999999999999999999999999999999999 78876 55788999999999999999999
Q ss_pred EEEccccCCCCCcCCCCHHHHHhhcccCCCCccchHhHHHHHHHHHhCCCcccceeeeecCCCCCeEEEEEEEEEcCCce
Q 005510 296 IRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPSGG 375 (693)
Q Consensus 296 i~~~~~~~Gn~~~~~t~~~~I~r~l~l~~G~~~~~~~l~~~~~~L~~lg~F~~V~i~~~~~~~~~~v~l~i~V~E~~~~~ 375 (693)
|. |+ ....+..++..++.++|+++|..+||+.++.|.++.-.+ |.+++.|+..+|..+|.|++++.++++
T Consensus 155 i~------g~---~~~~~~~~~~~~p~~~g~~Ln~~~lEq~l~~l~~~P~~q-a~~~l~pg~~~G~S~l~i~~~~~~~~~ 224 (554)
T COG2831 155 IT------GD---SDLRSVALRSLFPAHRGDPLNLRDLEQGLELLNRLPGVQ-ADAELVPGSEPGESDLVIKVQQGKPWR 224 (554)
T ss_pred Ec------CC---CccchhhHHhhccccCCCCCCHHHHHHHHHHhhhCcccc-ceeEEccCCCCCccEEEEEeeeCCCeE
Confidence 99 87 456667888899999999999999999999999998876 899999998999999999999999887
Q ss_pred EEEeEeeecCcCCCCCcceEEEEEEeecccCcCCeEEEEEEEeccee---eEEEEEEecccccCCCCceEEEEEEEeecc
Q 005510 376 FSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQID---SIFRINYTDPWIEGDDKRTSRTIMVQNSRT 452 (693)
Q Consensus 376 ~~~g~gyss~~~~g~~~g~~~~~~~~~~NlfG~G~~l~l~~~~g~~~---~~~~lsy~~P~~~~~~~~~s~~~~~~~~~~ 452 (693)
+++++.......+ ..+++++++.+.|++|.|+.+++++..+... ..++++|+.|+... . +++++++...+.
T Consensus 225 ~~~~~DN~G~~~t---G~~r~~~~l~~dn~lglgD~l~~~~~~~~~~~~~~~~~~~Ys~P~g~~-~--~~~~~s~~~y~~ 298 (554)
T COG2831 225 VSASADNYGSKST---GRYRLGVGLSLDNPLGLGDQLSLSYSRSLDGQTTNNYSLSYSVPLGYW-T--FSLGASYSEYRQ 298 (554)
T ss_pred EEEEecCCCCcCc---cceeeEeEEEecCCCcchhheeehhcccCCCcccceEEEEEEEEEccc-e--eEEEeeeeeeEe
Confidence 7776643322122 4578999999999999999999999984322 48999999999763 2 344444332221
Q ss_pred CCccccCCCCCCCceEEeEEEEEEEEEeecCC--CeEEEEEEEEEEEeeecCCCCc----ccccccCCceeeeccc----
Q 005510 453 PGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRP--KWSGTVGLIFQHSGARDEKGNP----IIKDFYSSPLTASGKT---- 522 (693)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~g~~l~l~~~l~~--~~~~~~gl~~~~~~~~~~~~~~----~~~~~~~~~l~~~~d~---- 522 (693)
. + . .......+..++...++.+.+++.+ ..++++++++.+.+..+..... ..+......+++++..
T Consensus 299 ~--~-~-~~~~~~~~~G~s~~~~~~l~~~l~R~~~~~~s~~~~~~~r~~~~~~~~~~~~~q~r~~~~~~~gl~~~~~~~~ 374 (554)
T COG2831 299 V--L-E-GPFDVLDYQGKSQNLSLRLSHPLLRNRSSKLSLGLGLSHRRSENYLDDTEIEVQRRRLTAVELGLSGRRYLGG 374 (554)
T ss_pred e--c-c-cCCceEEEecceEEEEEEeeeEEEecCcceEEEEEEEEEehhhhhhccccccccccccccEEecceEEEEecc
Confidence 1 1 0 1122345677788899999999954 4466667777766553321110 1111222222222111
Q ss_pred --CCceeEEEEEEEecCCCCCCCceEEEEeee-cCCcC-CCcceeEEEEEEEEEeEEecC--ceEEEEEeeceeccCCCc
Q 005510 523 --NDEMLIAKFESVYTGSGDQGSSMFVFNMEQ-GLPVW-PEWLFFNRVNARARKGVEIGP--ARLLLSLSGGHVVGNFSP 596 (693)
Q Consensus 523 --rD~~~~P~~g~~~~~~G~~g~~~~~~~~~~-~~~~~-~~~~~f~k~~~~~~~y~~l~~--~~l~~~~~~G~~~g~lp~ 596 (693)
.|..+.-.. +.++.| ... ..... ..+..|.++++++++.+||.. ..+..++.++++.+.+++
T Consensus 375 ~~~~~~l~~~~-----G~~~lG-------a~~~~~~~~~~~~~~f~~~~~~~~~~~~f~~~~~~~~~~~~~Q~s~~~L~s 442 (554)
T COG2831 375 GTLDASLGYRR-----GLGALG-------ASKDDEETNGEPTSRFKKLNGNASLLQPFGLGPFLYATQFNAQYSGDPLLS 442 (554)
T ss_pred ceecccchhhh-----Cchhhc-------CCCCchhhcCCCCcceEEEEEeeEEEeecccccEEEEEEEEEEEcCCCCCc
Confidence 111111000 011111 111 00011 246789999999999999995 478889999999899999
Q ss_pred cCceecCCCCCccCCcCCCccccceEEEEeEEEEEecCCc--eeEEEEEEeeecCCCCCCCCCCCCCcCccceeEEEEEe
Q 005510 597 HEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGEISFPMLGP--VEGVIFSDYGTDLGSGPSVPGGFLYDWPHVSYAFKVCS 674 (693)
Q Consensus 597 ~e~F~lGG~~svRGy~~~~lg~G~~~~~~s~Elr~pl~~~--l~~~~F~D~G~v~~~~~~~~~~~~~~~~s~G~Glr~~t 674 (693)
.|+|.+||..+||||+.+.+. ||..|+++.|+|+++... +++++|+|+|.||...... .......|+|+|+||..
T Consensus 443 ~e~fsiGg~~sVRGf~~~~ls-gD~G~~~snel~~~~~~~~~~~~y~f~D~G~v~~~~~~~--~~~~~l~g~~~Glr~~~ 519 (554)
T COG2831 443 SEKFSIGGRYSVRGFDGGSLS-GDRGWYLSNELRWPLPPGGALQPYVFVDYGKVYNNSAEY--LSGETLAGAGLGLRGNL 519 (554)
T ss_pred HHHeecCCCceecccCCCCcc-ccceEEEEEEEEeeccCCCceeEEEEEEeEEEecccccc--CCCCeeEEEEEeEEeee
Confidence 999999999999999998886 999999999999999987 9999999999999983221 12235789999999998
Q ss_pred cCCCCcccceeecccccc
Q 005510 675 LPPPPRLQPYFVYLFCFI 692 (693)
Q Consensus 675 piGPi~~dir~dy~~~~~ 692 (693)
.-+ +++.|+||.++.
T Consensus 520 ~~~---f~~~l~~g~pl~ 534 (554)
T COG2831 520 KDG---FSYDLDLGRPLS 534 (554)
T ss_pred cCc---ceeEEEeccccc
Confidence 866 788899988763
No 8
>PF01103 Bac_surface_Ag: Surface antigen; InterPro: IPR000184 The protein sequences of d15 from various strains of Haemophilus influenzae are highly conserved, with only a small variable region identified near the carboxyl terminus of the protein []. D15 is a highly conserved antigen that is protective in animal models and it may be a useful component of a universal subunit vaccine against Haemophilus infection and disease []. Membrane proteins from other bacteria have been shown to elicit protective immunity. Oma87 is a protective outer membrane antigen of Pasteurella multocida [].; GO: 0019867 outer membrane
Probab=99.96 E-value=3.6e-28 Score=258.99 Aligned_cols=264 Identities=26% Similarity=0.359 Sum_probs=209.6
Q ss_pred ccCcCCeEEEEEEEecceeeEEEEEEecccccCCCCceEEEEEEEeeccCCccccCCCCCCCceEEeEEEEEEEEEeecC
Q 005510 404 NVFGRNQKLNISLERGQIDSIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIR 483 (693)
Q Consensus 404 NlfG~G~~l~l~~~~g~~~~~~~lsy~~P~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~l~~~l~ 483 (693)
|+||.|+++++.+..+...+.+.++|+.|++.+++ +.+.+++++.+... .....|..++.++++++++++.
T Consensus 1 N~~G~g~~~~~~~~~~~~~~~~~~~~~~P~~~~~~--~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 71 (323)
T PF01103_consen 1 NLFGTGQSLSVSATYGSDSQSLSLSYTNPYFFGDR--LSLGFSLYYSSSDS-------DEFSSYDEQTFGFSLSLGYRIS 71 (323)
T ss_pred CCCCCCeEEEEEEEEcCceEEEEEEEEEcCCCCCC--EEEEEEEEEEEccc-------cccccceeeeccccccceeEcc
Confidence 89999999999999988889999999999988755 67777776653211 1234678888899999999999
Q ss_pred CCeEEEEEEEEEEEeeecCCCCcc------------cccccCCceeeecccCCceeEEEEEEEecCCCCCCCceEEEEee
Q 005510 484 PKWSGTVGLIFQHSGARDEKGNPI------------IKDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNME 551 (693)
Q Consensus 484 ~~~~~~~gl~~~~~~~~~~~~~~~------------~~~~~~~~l~~~~d~rD~~~~P~~g~~~~~~G~~g~~~~~~~~~ 551 (693)
+.+++++++.+.+.++........ ......+.++++||++|+.++|+ +|+. +.+..+
T Consensus 72 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~p~-------~G~~----~~~~~~ 140 (323)
T PF01103_consen 72 PNWSLSLGYSYSRNDFSTSSGSPFSDSVSSSDLQDGKSNISSLGLSLSYDTRDNSFFPT-------KGWY----LSFSLE 140 (323)
T ss_pred cceEEEEEEEEEEEEEEcCCCcccccccccccccCCceEEEEEEEEEEEecCCCccCCc-------cceE----EEEEEE
Confidence 999999999999988765432210 11234567889999999999997 5531 455555
Q ss_pred ecCCcCCCcceeEEEEEEEEEeEEecC---ceEEEEEeeceecc-----CCCccCceecCCCCCccCCcCCCccc-----
Q 005510 552 QGLPVWPEWLFFNRVNARARKGVEIGP---ARLLLSLSGGHVVG-----NFSPHEAFAIGGTNSVRGYEEGAVGS----- 618 (693)
Q Consensus 552 ~~~~~~~~~~~f~k~~~~~~~y~~l~~---~~l~~~~~~G~~~g-----~lp~~e~F~lGG~~svRGy~~~~lg~----- 618 (693)
.+.+..+++.+|.|+.+++++|+++.+ ..+++++.+|++.+ ++|..|+|++||.++||||..++++|
T Consensus 141 ~~~~~~~~~~~f~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~f~lGG~~svRGy~~~~~~~~~~~~ 220 (323)
T PF01103_consen 141 FSGKFLGSDSNFYKFELSARYYYPLGNNHKFVLALRLQGGYIFGYSNSDNLPFSERFYLGGPNSVRGYRYRSIGPRDGDG 220 (323)
T ss_pred EecccCCCcceEEEEEEEEEEEEECccCCceEEEEeeeeeEeeecccccccchhhhhccCCCCccccccCCccccccccC
Confidence 555445678889999999999999974 26778888887652 49999999999999999999999985
Q ss_pred ----cceEEEEeEEEEEecC-----CceeEEEEEEeeecCCCCCCCCCCC------CCcCccceeEEEEEecCCCCcccc
Q 005510 619 ----GRSYVVGSGEISFPML-----GPVEGVIFSDYGTDLGSGPSVPGGF------LYDWPHVSYAFKVCSLPPPPRLQP 683 (693)
Q Consensus 619 ----G~~~~~~s~Elr~pl~-----~~l~~~~F~D~G~v~~~~~~~~~~~------~~~~~s~G~Glr~~tpiGPi~~di 683 (693)
|+.++.+++|||+|++ ..+++++|+|+|+||+......... ..++.|+|+|+||.+|+||+
T Consensus 221 ~~~gG~~~~~~~~E~r~~l~~~~~~~~~~~~~F~D~G~v~~~~~~~~~~~~~~~~~~~~~~s~G~Glr~~~~~g~l---- 296 (323)
T PF01103_consen 221 DSLGGDYYFTASAEYRFPLPKIPGSPNLYLVAFADAGNVWNDNDNFPLNSDSFTSKDNIRSSVGVGLRYDTPIGPL---- 296 (323)
T ss_pred cccCceEEEEEeeeeEeeccccccCCcEEEEEEEccccccccCCCcCcccccccccccccceEEEEEEEecCcEEE----
Confidence 5999999999999994 3699999999999999876544321 13689999999999999875
Q ss_pred eeeccccc
Q 005510 684 YFVYLFCF 691 (693)
Q Consensus 684 r~dy~~~~ 691 (693)
|+|||+++
T Consensus 297 r~d~a~~l 304 (323)
T PF01103_consen 297 RFDYAYPL 304 (323)
T ss_pred EEEEEEEc
Confidence 67777654
No 9
>PF03865 ShlB: Haemolysin secretion/activation protein ShlB/FhaC/HecB; InterPro: IPR005565 Haemolysin (HlyA) and related toxins are secreted across both the cytoplasmic and outer membranes of Gram-negative bacteria in a process which proceeds without a periplasmic intermediate. HlyA is directed by an uncleaved C-terminal targeting signal and the HlyD and HlyB translocator proteins [].; PDB: 2QDZ_A 3NJT_A.
Probab=99.92 E-value=2.4e-22 Score=220.17 Aligned_cols=307 Identities=18% Similarity=0.186 Sum_probs=172.0
Q ss_pred hhcccCCCCccchHhHHHHHHHHHhCCCcccceeeeecCCCCCeEEEEEEEEEcCCceEEEeEe-eecCcCCCCCcceEE
Q 005510 318 RQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPSGGFSAGGG-ISSGITSGPLSGLIG 396 (693)
Q Consensus 318 r~l~l~~G~~~~~~~l~~~~~~L~~lg~F~~V~i~~~~~~~~~~v~l~i~V~E~~~~~~~~g~g-yss~~~~g~~~g~~~ 396 (693)
-.++..+|+++|..+||+.+++|.+++-- +|++.+.|++++|..+|.|++++.+++.+.+++. +++. . ...+++
T Consensus 9 ~~fP~~~G~~LnlrdlEQgle~lnrl~~~-~~~~~i~PG~~~G~S~i~i~~~~~~~~~~~~~~DN~Gs~-~---TG~~q~ 83 (404)
T PF03865_consen 9 TAFPNRKGKPLNLRDLEQGLEQLNRLPSN-QAKIDILPGEEPGTSDIVIENQPSKPWSGSLSLDNSGSK-S---TGRYQG 83 (404)
T ss_dssp --STT-TT-B--HHHHHHHHHHH-S-SSE-EEEEEEEE-SSTTEEEEEEEEEE-SS-EEEEEEEE-SSS-----SS-EEE
T ss_pred ccCCCCCCCCCCHHHHHHHHHHhccCCCC-cceEEEecCCCCCEEEEEEEecccCCEEEEEEEecCCcc-c---cceEEE
Confidence 35778999999999999999999998764 5889999998899999999999988876665543 3332 1 145788
Q ss_pred EEEEeecccCcCCeEEEEEEEecc------eeeEEEEEEecccccCCCCceEEEEEEEeeccCCccccCCCCCCCceEEe
Q 005510 397 SFAYSHRNVFGRNQKLNISLERGQ------IDSIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIG 470 (693)
Q Consensus 397 ~~~~~~~NlfG~G~~l~l~~~~g~------~~~~~~lsy~~P~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (693)
.+++..+|+||.++.+++++.... ..+.+.+.|+.|+.. |.+++.+.++++.... .. ......+..+
T Consensus 84 ~~~l~~dnplgl~D~lsls~~~~~~~~~~~~~~~~~~~YsvP~G~-----~~ls~~~s~s~y~~~~-~~-~~~~~~~~G~ 156 (404)
T PF03865_consen 84 GATLSLDNPLGLNDQLSLSYSSSLDNPDSRYSRSYSLSYSVPYGY-----WTLSLFASYSDYRYHQ-GL-SYSTYDLSGD 156 (404)
T ss_dssp EEEEEEE-SSSSS-EEEEEEEE--S--SS-EEEEEEEEEEEEETT-----EEEEEEEEEEEEE----SS-SS-----EEE
T ss_pred EEEEEECCCccccceeEEEEeccccCcccCCceEEEEEEEeeeec-----eEEEEEEEEeEEEEee-cc-ccceEEeeee
Confidence 999999999999999999987642 235688999999874 3454443333332111 00 0112345666
Q ss_pred EEEEEEEEEeecCC--CeEEEEEEEEEEEeeecCC--CCc--ccccccCCceeeecccCCceeEEEEEEEecCCCCCCCc
Q 005510 471 RVTAGMEFSRPIRP--KWSGTVGLIFQHSGARDEK--GNP--IIKDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSS 544 (693)
Q Consensus 471 ~~g~~l~l~~~l~~--~~~~~~gl~~~~~~~~~~~--~~~--~~~~~~~~~l~~~~d~rD~~~~P~~g~~~~~~G~~g~~ 544 (693)
+..+++.++|++.+ ..++++.+.+.+.+..+.. ... ..+......+++++... ++ .| ..
T Consensus 157 s~~~~~~~~~~l~R~~~~k~~l~~~l~~k~~~n~i~d~~i~v~~~~lt~~~lgl~~~~~----~~--------~g---~~ 221 (404)
T PF03865_consen 157 SRSLGLRLSYVLYRSQNSKTSLSAGLSHKKSKNYINDIEIEVQSRRLTSLELGLNHSRY----LG--------GG---VL 221 (404)
T ss_dssp EEEEEEEEEEEEE--SSEEEEEEEEEEEEEEEEE--TTS---EEEEEEEEEEEEEEEEE-----T--------TE---EE
T ss_pred EEEEEEEeeEEEEECCCceEEEEEEEEEEEcccccccceeeeccceeeEEEeccceEEE----ec--------Cc---EE
Confidence 77788888888853 4455666665555443321 111 11223334444443211 11 01 00
Q ss_pred eEEEEeeecCCcC------------CCcceeEEEEEEEEEeEEec--Cc--eEEEEEeeceeccCCCccCceecCCCCCc
Q 005510 545 MFVFNMEQGLPVW------------PEWLFFNRVNARARKGVEIG--PA--RLLLSLSGGHVVGNFSPHEAFAIGGTNSV 608 (693)
Q Consensus 545 ~~~~~~~~~~~~~------------~~~~~f~k~~~~~~~y~~l~--~~--~l~~~~~~G~~~g~lp~~e~F~lGG~~sv 608 (693)
...+++++|++++ ..+.+|.|+.+.+.++.++. +. .+..++.+||+.++|+..|+|.+||.++|
T Consensus 222 ~~~l~~~~G~~~~ga~~~~~~~~~~~~~~~f~k~~l~~~~~~~~~~~~~~~~~~~~~~gQys~d~L~ssEq~siGG~~sV 301 (404)
T PF03865_consen 222 SANLSYSQGLPWFGAERDPEDADGNGPDSQFTKWSLNASLYQPFQLGNQPFSYNSSLSGQYSNDNLYSSEQFSIGGRYSV 301 (404)
T ss_dssp EEEEEEEEE-------------------EEEEEE---EEEEEEEEETTEEEEEEEEEEEEE-SS-SSSSEE--S------
T ss_pred EEeEEEEeccCccCCcCCchhccCCCcccceEEEEeehhhccceeecCccEEEEEEEEEEECCCCCChhheeccCCCceE
Confidence 1233333333221 13568999888888777763 43 45567889999889999999999999999
Q ss_pred cCCcCCCccccceEEEEeEEEEEecCC---ceeEEEEEEeeecCCCC
Q 005510 609 RGYEEGAVGSGRSYVVGSGEISFPMLG---PVEGVIFSDYGTDLGSG 652 (693)
Q Consensus 609 RGy~~~~lg~G~~~~~~s~Elr~pl~~---~l~~~~F~D~G~v~~~~ 652 (693)
|||+.+++. ||..++++.|+.+++.. .+.+++|+|+|.|+...
T Consensus 302 RGF~~~~ls-Gd~G~~~rNeLs~~~~~~~~~l~py~g~D~G~v~~~~ 347 (404)
T PF03865_consen 302 RGFDESSLS-GDSGWYLRNELSWPFPLGNFSLTPYLGLDYGRVRGNK 347 (404)
T ss_dssp TT----S---SS-SS--EESEEEEEEE--SS-EEEEEEEEEEEEESS
T ss_pred cccCCCcee-ecceEEEEEEEEeecCCCCceEEEEEEEEEEEEecCC
Confidence 999999986 99999999999987643 48889999999999764
No 10
>TIGR03303 OM_YaeT outer membrane protein assembly complex, YaeT protein. Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat.
Probab=99.91 E-value=2.3e-21 Score=230.39 Aligned_cols=230 Identities=16% Similarity=0.292 Sum_probs=194.6
Q ss_pred ccccCccccceEEEEEEEeCCCCccChhhHHHHHHHHhhccCCCCccCHHHHHHHHHHH----HHcCccceEeEEEEe--
Q 005510 128 SVSRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRI----IDSGYFCSCMPVAVD-- 201 (693)
Q Consensus 128 ~~~~~~~e~~~I~~I~i~G~~N~~i~~~~l~~~~~~~l~~~~~g~~~~~~~l~~d~~~L----~~~GYf~a~v~~~~~-- 201 (693)
...+.+.|+|+|++|+|+| |+.++++.|++.+ ..+++|+.|+++.+++|+++| .++|||++.|...+.
T Consensus 60 ~l~~~v~e~~~i~~i~~~G--~~~~~~~~l~~~~----~~~~~g~~~~~~~~~~~~~~l~~~y~~~Gy~~a~V~~~~~~~ 133 (741)
T TIGR03303 60 VLVIKVKERPIINSIVFSG--NKEIKKDQLKKAL----VGIKKGEIFNRAKLEKDEKALKEFYRSRGKYNAKVEAKVTPL 133 (741)
T ss_pred EEEEEEEecceEEEEEEEC--CccCCHHHHHHHH----hhccCCCcCCHHHHHHHHHHHHHHHHHcCcceeEEEEEEEEC
Confidence 3688999999999999999 9999999998743 258899999999999999999 389999999987653
Q ss_pred cCCcEEEEEEEeeCCce--EEEEEEcCcCCChhHHHHhhccCC---------CCcccHHHHHHHHHHHHHHHHhCCc-ee
Q 005510 202 TRDGIRLVFQVEPNQEF--HGLVCEGANVLPTKFVEDAFRDGY---------GKVVNIRRLDEVITSINGWYMERGL-FG 269 (693)
Q Consensus 202 ~~~~v~l~~~V~EG~~i--~~I~~~Gn~~~~~~~L~~~~~~~~---------G~~~~~~~l~~~~~~I~~~Y~~~GY-~a 269 (693)
.++.+.|+|.|+||+++ .+|.|+||+.+++++|++++..++ +++|+.+.+++++++|.++|+++|| .+
T Consensus 134 ~~~~~~v~~~v~eg~~~~i~~i~~~Gn~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~y~~~Gy~~a 213 (741)
T TIGR03303 134 PRNRVDLEFNIKEGKKAKIKKINFVGNKAFSDSELRDVFALKESNFWSWFTGDDKYSKQKLEADLELLRSFYLNRGYLDF 213 (741)
T ss_pred CCCeEEEEEEEecCCEEEEEEEEEECCCcCCHHHHHHHHhcCcchhHHhccCCCeECHHHHhhhHHHHHHHHHhCCcEEE
Confidence 45668999999999964 499999999999999999998776 4899999999999999999999999 68
Q ss_pred EeeeEE-Ee-eC-c--EEEEEEEEE---EEEeEEEEEccccCCCCCcCCCCHHHHHhhcccCCCCccchHhHHHHHHHHH
Q 005510 270 MVSGVE-IL-SG-G--IIRLQVAEA---EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVL 341 (693)
Q Consensus 270 ~V~~~~-~~-~~-g--~v~~~I~eg---~I~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l~l~~G~~~~~~~l~~~~~~L~ 341 (693)
+|...+ .. .+ + .|++.|.|| +|++|.|. |+ ..++++.|++.+.+++|++|+.++++++.++|.
T Consensus 214 ~v~~~~~~~~~~~~~~~i~~~v~eG~~~~i~~i~i~------g~---~~~~~~~l~~~~~~~~G~~~~~~~~~~~~~~l~ 284 (741)
T TIGR03303 214 KVESTQVSITPDKKGVYITYNIKEGEQYKFGEVTIE------GD---LIGPDEELKKLLKIKKGEVFNRSKVTKIVKAIK 284 (741)
T ss_pred EEcCCEEEECCCCCEEEEEEEeccCCCEEEEeEEEE------ec---cCCcHHHHHHhhcCCCCCeeCHHHHHHHHHHHH
Confidence 888433 22 22 2 488999997 79999999 88 578889999999999999999999999988876
Q ss_pred h----CCCcccceeeeec--CCCCCeEEEEEEEEEcCC
Q 005510 342 T----MGIMEDVSIIPQP--AGDTGKVDLIMNVVERPS 373 (693)
Q Consensus 342 ~----lg~F~~V~i~~~~--~~~~~~v~l~i~V~E~~~ 373 (693)
+ .||. .+.+.+.+ ..+.+.++|++.|.|+++
T Consensus 285 ~~y~~~Gy~-~~~v~~~~~~~~~~~~v~v~~~v~eg~~ 321 (741)
T TIGR03303 285 DLLGEKGYA-FANVNPRPQINDENKTVDLTFKVDPGKR 321 (741)
T ss_pred HHHHhcCCc-eeEEEecceECCCCCEEEEEEEEccCCe
Confidence 5 6874 35555433 235678999999999986
No 11
>KOG2602 consensus Predicted cell surface protein homologous to bacterial outer membrane proteins [General function prediction only]
Probab=99.91 E-value=3.5e-24 Score=222.99 Aligned_cols=362 Identities=17% Similarity=0.224 Sum_probs=248.9
Q ss_pred EEEEEEeEEEEEccccCCCCCcCCCCHHHHHhhccc--CCCCccc-hHhHHHHHHHHHhCCCcccceeeeec----CCCC
Q 005510 287 AEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTT--KKGQVYS-MLQGKRDVETVLTMGIMEDVSIIPQP----AGDT 359 (693)
Q Consensus 287 ~eg~I~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l~l--~~G~~~~-~~~l~~~~~~L~~lg~F~~V~i~~~~----~~~~ 359 (693)
.|.+|..|+|. |+ .+|++.+|.+++.. +...+.+ ......+..+|.+++.|+.|++.++. ...+
T Consensus 34 ~~~~v~~V~v~------Gl---~~Tkdd~I~k~v~~~~ka~nl~el~~~s~~a~~nL~~l~iF~~v~~~iD~~~g~~~~p 104 (457)
T KOG2602|consen 34 LESRVDHVIVS------GL---ERTKDDFIMKEVDLVFKAKNLQELLLASHEAASNLRALGIFDSVNILIDTKEGSDALP 104 (457)
T ss_pred ccceeeEEEec------cc---cccchHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHhcccccceeeeccccCCCCCC
Confidence 35589999999 98 69999999998762 2222211 12334566788999999999998874 2458
Q ss_pred CeEEEEEEEEEcCCceEEEeEeeecCcCCCCCcceEEEEEEeecccCcCCeEEEEEEEec-ceeeEEEEEEecccccCCC
Q 005510 360 GKVDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERG-QIDSIFRINYTDPWIEGDD 438 (693)
Q Consensus 360 ~~v~l~i~V~E~~~~~~~~g~gyss~~~~g~~~g~~~~~~~~~~NlfG~G~~l~l~~~~g-~~~~~~~lsy~~P~~~~~~ 438 (693)
+..+|++.|.|.++ +....|-..+ . .--.+.+.+..+|++|+|+.++.++.++ .....+.+++..|.+.+..
T Consensus 105 ~~~~Vt~~v~E~kr--~tg~~GT~~g--n---~~~s~~~~l~~~ni~G~ge~l~~~~sy~~~~~~~~~l~f~~P~~~~~~ 177 (457)
T KOG2602|consen 105 GGLVVTFLVTEPKR--LTGSTGTDVG--N---REGSVELNLKLPNILGRGENLSGQVSYGCTRSTDMGLSFYKPRFHGLK 177 (457)
T ss_pred CceeEEEEeeecch--heeecccccc--C---CCcccchhcccccccCcceeeeeeEEEecccCceeeeEEEecccCCCC
Confidence 88999999999887 3443342211 0 1112456678899999999999999998 5567899999999987643
Q ss_pred CceEEEEEEEeeccCCccccCCCCCCCceEEeEEEEEEEEEeecCCCeEEEEEEEEEEEeee--cCCCCccccccc----
Q 005510 439 KRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGAR--DEKGNPIIKDFY---- 512 (693)
Q Consensus 439 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~l~~~l~~~~~~~~gl~~~~~~~~--~~~~~~~~~~~~---- 512 (693)
. .++...++...+. ...+.++....++++.+.++......+++.|..-..++. ....+..++...
T Consensus 178 ~--~~~~~~~~~~~d~-------~~~ss~d~~~~g~sL~l~~~~~~~l~H~l~~~~~WR~l~~~sq~as~svR~qaG~~L 248 (457)
T KOG2602|consen 178 T--PFSSFSIFRTQDW-------MKWSSLDETHRGASLELSAEDWFLLFHELKYEIAWRNLGDLSQGASFSVRRQAGHSL 248 (457)
T ss_pred c--chhhhhhhhhhcc-------cccccccccccceEEEEecchhhhhhHHHHHHHHHHhhccccccccHHHHHHhhHHH
Confidence 2 3333332222221 223456666667777776653211111222111111221 111222233222
Q ss_pred --CCceeeecccCCceeEEEEEEEecCCCCCCCceEEEEeeecCCcCCCcceeEEEEEEEEEeEEecCc-eEEEEEeece
Q 005510 513 --SSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGVEIGPA-RLLLSLSGGH 589 (693)
Q Consensus 513 --~~~l~~~~d~rD~~~~P~~g~~~~~~G~~g~~~~~~~~~~~~~~~~~~~~f~k~~~~~~~y~~l~~~-~l~~~~~~G~ 589 (693)
.+..++.+|+||..+.|+ +|.. +..+.+.+. ...+..|.|-+++.++..|+.-. ++.+++++|+
T Consensus 249 ~s~L~~tfv~D~Rd~~~~pt-------rG~~----~k~~~e~~g--~~~~~sf~k~e~~lq~avpl~~~~~~s~~~~~G~ 315 (457)
T KOG2602|consen 249 KSSLSYTFVFDKRDSSIIPT-------RGIL----LKSTSELAG--LFGDVSFLKSELDLQKAVPLGFDATLSFSFSGGV 315 (457)
T ss_pred HHhhcceEEEeccCCccccc-------ccce----eEeehhhcC--cccchhhhhhhhhheeccccccceeeEeeEeeee
Confidence 355678899999999998 4421 233334332 22458899999999999999876 7888999998
Q ss_pred ecc----CCCccCceecCCCCCccCCcCCCccc--------cceEEEEeEEEEEecCC------ceeEEEEEEeeecCCC
Q 005510 590 VVG----NFSPHEAFAIGGTNSVRGYEEGAVGS--------GRSYVVGSGEISFPMLG------PVEGVIFSDYGTDLGS 651 (693)
Q Consensus 590 ~~g----~lp~~e~F~lGG~~svRGy~~~~lg~--------G~~~~~~s~Elr~pl~~------~l~~~~F~D~G~v~~~ 651 (693)
+.+ .+++.||||+||+.+||||..+++|| |+.+|.+.+.+-+|++. .+++++|+.+|++-+.
T Consensus 316 l~~~~~~~v~I~dRFylGGps~lRGFk~~giGP~~~~~~lGG~a~~a~~~~L~~~lP~~~~~~~~fr~h~F~naG~l~~l 395 (457)
T KOG2602|consen 316 LKPLGSRPVSIADRFYLGGPSDLRGFKTRGIGPKDEGDFLGGDAFVAAGAHLYFPLPFAKGFKSGFRGHVFANAGNLANL 395 (457)
T ss_pred eecCCCCccchhhhhccCCcccccccccCCcCCCCCCcccCCceeeEeeeEecccCCcccccccceeeEEEecccccccc
Confidence 864 47789999999999999999999986 89999999999998875 4899999999999876
Q ss_pred CCCCCCC-----CCCcCccceeEEEEEec-CCCCcccceeecccccc
Q 005510 652 GPSVPGG-----FLYDWPHVSYAFKVCSL-PPPPRLQPYFVYLFCFI 692 (693)
Q Consensus 652 ~~~~~~~-----~~~~~~s~G~Glr~~tp-iGPi~~dir~dy~~~~~ 692 (693)
....+.+ ....+.|+|+|+-+.+| + .||+.+||++
T Consensus 396 ~s~~~~~~~~kl~e~~r~S~G~Glv~~~~~~------aR~ELNy~~p 436 (457)
T KOG2602|consen 396 SSEAPKNTIPKLLETFRTSVGAGLVVPTPRA------ARLELNYCLP 436 (457)
T ss_pred CcccccchhhhhhhhhccccccceEEecchh------hceeeeeEEE
Confidence 5422111 12358999999999888 5 5899999974
No 12
>PRK11067 outer membrane protein assembly factor YaeT; Provisional
Probab=99.91 E-value=1.9e-22 Score=241.15 Aligned_cols=233 Identities=13% Similarity=0.214 Sum_probs=195.1
Q ss_pred ccccCccccceEEEEEEEeCCCCccChhhHHHHHHHHhhccCCCCccCHHHHHHHHHHH----HHcCccceEeEEEEe--
Q 005510 128 SVSRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRI----IDSGYFCSCMPVAVD-- 201 (693)
Q Consensus 128 ~~~~~~~e~~~I~~I~i~G~~N~~i~~~~l~~~~~~~l~~~~~g~~~~~~~l~~d~~~L----~~~GYf~a~v~~~~~-- 201 (693)
.+.+.+.|+|.|++|.|+| |+.++++.|++.+.. + .+++|+.|++..+++++++| .++|||++.|...+.
T Consensus 83 ~l~~~v~e~p~I~~I~~~G--n~~~~~~~l~~~l~~-~-~~~~g~~~~~~~~~~~~~~l~~~Y~~~Gy~~~~V~~~~~~~ 158 (803)
T PRK11067 83 TLLVQVKERPTIASITFSG--NKSVKDDMLKQNLEA-S-GVRVGEALDRTTLSNIEKGLEDFYYSVGKYSASVKAVVTPL 158 (803)
T ss_pred EEEEEEecCcEEEEEEEEC--cccCCHHHHHHHHHh-c-cccccccCCHHHHHHHHHHHHHHHHhcCccccEEEEEEEEC
Confidence 5689999999999999999 999999999876522 2 57899999999999999999 479999999987653
Q ss_pred cCCcEEEEEEEeeCCc--eEEEEEEcCcCCChhHHHHhhccCCC---------CcccHHHHHHHHHHHHHHHHhCCc-ee
Q 005510 202 TRDGIRLVFQVEPNQE--FHGLVCEGANVLPTKFVEDAFRDGYG---------KVVNIRRLDEVITSINGWYMERGL-FG 269 (693)
Q Consensus 202 ~~~~v~l~~~V~EG~~--i~~I~~~Gn~~~~~~~L~~~~~~~~G---------~~~~~~~l~~~~~~I~~~Y~~~GY-~a 269 (693)
.++++.|+|.|+||++ |++|.|+||+.+++++|++.+.++++ +.|+..++++++++|+++|+++|| .+
T Consensus 159 ~~~~v~l~~~i~EG~~~~I~~I~f~GN~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~~l~~~Y~~~Gy~~a 238 (803)
T PRK11067 159 PRNRVDLKLVFTEGVSAKIQQINIVGNHAFSTDELISRFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARF 238 (803)
T ss_pred CCCeEEEEEEEecCCeEEEEEEEEECCCCcCHHHHHHHhcCCCCcchhhhccCCccCHHHHhhhHHHHHHHHHHCCCceE
Confidence 4678899999999987 55999999999999999999998875 779999999999999999999999 58
Q ss_pred EeeeEEE--eeCc---EEEEEEEEE---EEEeEEEEEccccCCCCCcCCCCHHHHHhhcccCCCCccchHhHHHHHHHH-
Q 005510 270 MVSGVEI--LSGG---IIRLQVAEA---EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETV- 340 (693)
Q Consensus 270 ~V~~~~~--~~~g---~v~~~I~eg---~I~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l~l~~G~~~~~~~l~~~~~~L- 340 (693)
+|.+... ..++ .|++.|+|| +|++|.|. |+ ....++.|++.+.+++|++|+..++++..++|
T Consensus 239 ~V~~~~~~~~~~~~~v~i~~~I~eG~~~~i~~i~~~------G~---~~~~~~~l~~~~~~k~G~~~~~~~~~~~~~~i~ 309 (803)
T PRK11067 239 NIDSTQVSLTPDKKGIYITVNITEGDQYKLSGVQVS------GN---LAGHSAEIEKLTKIEPGELYNGTKVTKMEDDIK 309 (803)
T ss_pred EecCcEEEEcCCCceEEEEEEEeeCCcEEEEEEEEE------ec---CCCCHHHHHHhhcCCCCceeCHHHHHHHHHHHH
Confidence 9986432 2232 488999997 89999999 88 46778889999999999999998888777655
Q ss_pred ---HhCCCc-ccceeeeecCCCCCeEEEEEEEEEcCC
Q 005510 341 ---LTMGIM-EDVSIIPQPAGDTGKVDLIMNVVERPS 373 (693)
Q Consensus 341 ---~~lg~F-~~V~i~~~~~~~~~~v~l~i~V~E~~~ 373 (693)
.+.||+ ..|...+....+.+.++|++.|.|+++
T Consensus 310 ~~~~~~GY~~a~v~~~~~~~~~~~~v~i~~~v~eG~~ 346 (803)
T PRK11067 310 KLLGRYGYAYPRVQTQPEINDADKTVKLHVNVDAGNR 346 (803)
T ss_pred HHHHhCCCCcceeeeccccCCCCCEEEEEEEEeeCCe
Confidence 457994 334322323345789999999999986
No 13
>COG4775 Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane]
Probab=99.89 E-value=4.6e-21 Score=221.48 Aligned_cols=233 Identities=18% Similarity=0.318 Sum_probs=198.9
Q ss_pred cccccCccccceEEEEEEEeCCCCccChhhHHHHHHHHhhccCCCCccCHHHHHHHHHHHH----HcCccceEeEEEE-e
Q 005510 127 HSVSRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRII----DSGYFCSCMPVAV-D 201 (693)
Q Consensus 127 ~~~~~~~~e~~~I~~I~i~G~~N~~i~~~~l~~~~~~~l~~~~~g~~~~~~~l~~d~~~L~----~~GYf~a~v~~~~-~ 201 (693)
..+.+++.|+|.|++|.|+| |+.+++++|++.+ .+++|++|+.+.+++++++|. +.|||++.|+..+ +
T Consensus 82 ~~Lvv~V~e~p~I~~v~~~G--n~~i~~~~L~~~l-----~~~~g~~~~~~~l~~~~~~l~e~Y~~~G~~~~~v~~~~~~ 154 (766)
T COG4775 82 GTLVVTVKERPVINSVVFSG--NKSIKDDALKKNL-----KIKPGEVLNRAKLEADVEALKEAYLSRGYYSVKVTYKVTP 154 (766)
T ss_pred CEEEEEEecCCcEEEEEEeC--CccCChHHHHHhh-----ccCCCCcccHHHHHHHHHHHHHHHHhcCeecceeEEEEEE
Confidence 34799999999999999999 9999999999743 578999999999999999995 6999999998665 2
Q ss_pred -cCCcEEEEEEEeeCCc--eEEEEEEcCcCCChhHHHHhhccCCC---------CcccHHHHHHHHHHHHHHHHhCCc-e
Q 005510 202 -TRDGIRLVFQVEPNQE--FHGLVCEGANVLPTKFVEDAFRDGYG---------KVVNIRRLDEVITSINGWYMERGL-F 268 (693)
Q Consensus 202 -~~~~v~l~~~V~EG~~--i~~I~~~Gn~~~~~~~L~~~~~~~~G---------~~~~~~~l~~~~~~I~~~Y~~~GY-~ 268 (693)
.+++|.|.|.|+||+. ++.|.|+||+++++.+|++.+.+++- +.|++.+++.|++.|+++|+++|| -
T Consensus 155 ~~~~~v~v~f~i~eG~~~~i~~I~~~Gn~~~s~~~l~~~~~~k~~~~~~~~~~~~~y~~~~l~~D~e~lr~~Y~n~Gy~d 234 (766)
T COG4775 155 LPRNRVDVVFVINEGPSAKIKQINFEGNTAFSDSDLESVVQTKESNIWGWLTRLDKYDPDKLEADLETLRSFYLNRGYAD 234 (766)
T ss_pred CCCCeEEEEEEeCCCCccceeeeEEeccccccchhhhhheeeccceeEEEEecccccChhhhhccHHHHHHHHHhCceEE
Confidence 4799999999999986 56999999999999999998877653 469999999999999999999999 5
Q ss_pred eEeeeEEEee--C--c-EEEEEEEEE---EEEeEEEEEccccCCCCCcCCCCHHHHHhhcccCCCCccchHhHHHHHHHH
Q 005510 269 GMVSGVEILS--G--G-IIRLQVAEA---EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETV 340 (693)
Q Consensus 269 a~V~~~~~~~--~--g-~v~~~I~eg---~I~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l~l~~G~~~~~~~l~~~~~~L 340 (693)
++|...+... + + .|++.|.|| ++++|.|+ |+. ....+.|.+.+.+++|++|+.++++++..+|
T Consensus 235 ~~v~s~~~~~~~~k~~~~vt~~V~EG~~y~~~~i~i~------g~~---~~~~~el~~~~~~~~g~~fn~~~i~~~~~~I 305 (766)
T COG4775 235 FRVSSTQVSLDPDKKGVTVTYTVKEGPQYKFGSVLIE------GNL---AGVSEELEKLLKVKPGKLFNRKKIEDDADKI 305 (766)
T ss_pred EEEeeeeecccCCCccEEEEEEEccCCceEEEEEEEE------cCc---cCcHHHHHHhhccCCCceEcHHHHHHHHHHH
Confidence 8888654422 2 2 489999997 79999999 883 5558889999999999999999999988877
Q ss_pred H----hCCC-cccceeeeecCCCCCeEEEEEEEEEcCCce
Q 005510 341 L----TMGI-MEDVSIIPQPAGDTGKVDLIMNVVERPSGG 375 (693)
Q Consensus 341 ~----~lg~-F~~V~i~~~~~~~~~~v~l~i~V~E~~~~~ 375 (693)
. +.|| |..|.+.+.++.+..+++|.+.|.++++-.
T Consensus 306 ~~~~~~~GY~~a~V~p~~~~n~~~~tv~v~~~V~~g~~~~ 345 (766)
T COG4775 306 KERYARYGYAFANVSPQPDANDENKTVDVVFRVDEGDRVY 345 (766)
T ss_pred HHHHHhcCceeeEeeeecccCCCCcEEEEEEEEEcCCcee
Confidence 4 5688 666665666656678999999999998743
No 14
>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO). ShlB is important in the secretion and activation of the haemolysin ShlA. It has been postulated that the POTRA domain has a chaperone-like function over ShlA; it may fold back into the C-terminal beta-barrel channel []. ; PDB: 2X8X_X 2QDZ_A 3NJT_A 3MC8_A 3MC9_B.
Probab=98.87 E-value=9.9e-09 Score=85.10 Aligned_cols=72 Identities=21% Similarity=0.457 Sum_probs=60.3
Q ss_pred eEEEEEEcCcCCChhHHHHhhccCCCCcccHHHHHHHHHHHHHHHHhCCc-eeEee-eEEEeeCcEEEEEEEEE
Q 005510 218 FHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGL-FGMVS-GVEILSGGIIRLQVAEA 289 (693)
Q Consensus 218 i~~I~~~Gn~~~~~~~L~~~~~~~~G~~~~~~~l~~~~~~I~~~Y~~~GY-~a~V~-~~~~~~~g~v~~~I~eg 289 (693)
+++|+|+|++.++.++|.++++...|++++...|++..++|.++|+++|| +++|. |.+...+|.|++.|.||
T Consensus 3 i~~i~~~G~~~~~~~~l~~~~~~~~g~~l~~~~l~~~~~~l~~~y~~~GY~~s~v~~p~q~i~~G~l~i~V~eG 76 (76)
T PF08479_consen 3 IKGIRFEGNTLLPEEELQAILAPYIGRCLTLADLQQLADALTNYYREKGYITSRVYLPPQDISDGVLTIRVVEG 76 (76)
T ss_dssp --EEEEES-TSSSCCHHHHHHGGGTTSBB-HHHHHHHHHHHHHHHHHTT-TT-EEEEEEEEETTSEEEEEEE--
T ss_pred eEEEEEECCCcCCHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHcCceEEEEEeCCeecCCCEEEEEEEcC
Confidence 67899999999999999999999999999999999999999999999999 78876 56778899999999986
No 15
>PF07244 Surf_Ag_VNR: Surface antigen variable number repeat; InterPro: IPR010827 This motif is found primarily in bacterial surface antigens, normally as variable number repeats at the N terminus. The C terminus of these proteins is normally represented by IPR000184 from INTERPRO. There may also be a relationship to haemolysin activator HlyB (IPR005565 from INTERPRO). The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.; GO: 0019867 outer membrane; PDB: 2X8X_X 3MC8_A 3OG5_A 3MC9_B 2QCZ_B 3EFC_A 3Q6B_A 2QDF_A 2V9H_A.
Probab=98.81 E-value=3.2e-08 Score=82.32 Aligned_cols=73 Identities=18% Similarity=0.261 Sum_probs=63.4
Q ss_pred ceEEEEEEcC-cCCChhHHHHhhccCCCCcccHHHHHHHHHHHHHHHHhCCc-eeEeeeEEEeeCc--EEEEEEEEE
Q 005510 217 EFHGLVCEGA-NVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGL-FGMVSGVEILSGG--IIRLQVAEA 289 (693)
Q Consensus 217 ~i~~I~~~Gn-~~~~~~~L~~~~~~~~G~~~~~~~l~~~~~~I~~~Y~~~GY-~a~V~~~~~~~~g--~v~~~I~eg 289 (693)
++.+|.|.|| +.+++++|++.+.+++|++|+...+++++++|.++|.++|| +++|.+....+++ .|++.|.||
T Consensus 2 ~i~~I~i~Gn~~~~~~~~l~~~l~~~~G~~~~~~~i~~~~~~l~~~y~~~Gy~~~~V~~~~~~~~~~v~l~~~V~Eg 78 (78)
T PF07244_consen 2 RIGEINIEGNLKKFSDEELRRELGLKPGDPFNPEKIEEDIERLQDYYKDKGYFFAKVSPEIDPDDNTVDLTFNVDEG 78 (78)
T ss_dssp EEEEEEEESE-SSSHHHHHHHCHSS-TTSBECHHHHHHHHHHHHHHHHTTSCSEEEEEEEEEEETTEEEEEEEEEEC
T ss_pred EEEEEEEEcCceEeCHHHHHhhcCCCCCCEeCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCEEEEEEEEEeC
Confidence 5779999998 89999999999999999999999999999999999999999 8999875544434 478888885
No 16
>PF07244 Surf_Ag_VNR: Surface antigen variable number repeat; InterPro: IPR010827 This motif is found primarily in bacterial surface antigens, normally as variable number repeats at the N terminus. The C terminus of these proteins is normally represented by IPR000184 from INTERPRO. There may also be a relationship to haemolysin activator HlyB (IPR005565 from INTERPRO). The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.; GO: 0019867 outer membrane; PDB: 2X8X_X 3MC8_A 3OG5_A 3MC9_B 2QCZ_B 3EFC_A 3Q6B_A 2QDF_A 2V9H_A.
Probab=98.78 E-value=2.6e-08 Score=82.87 Aligned_cols=72 Identities=19% Similarity=0.468 Sum_probs=62.4
Q ss_pred ceEEEEEEEeCCC-CccChhhHHHHHHHHhhccCCCCccCHHHHHHHHHHHH----HcCccceEeEEEE-ecCCcEEEEE
Q 005510 137 VLISEVLVRNKDG-EELERKDLETEALTALKACRANSALTVREVQEDVHRII----DSGYFCSCMPVAV-DTRDGIRLVF 210 (693)
Q Consensus 137 ~~I~~I~i~G~~N-~~i~~~~l~~~~~~~l~~~~~g~~~~~~~l~~d~~~L~----~~GYf~a~v~~~~-~~~~~v~l~~ 210 (693)
++|.+|.|+| | +.++++.|++ .| .+++|+.|+++.+++++++|. +.||+.+.|.... .+++.+.|+|
T Consensus 1 ~~i~~I~i~G--n~~~~~~~~l~~----~l-~~~~G~~~~~~~i~~~~~~l~~~y~~~Gy~~~~V~~~~~~~~~~v~l~~ 73 (78)
T PF07244_consen 1 YRIGEINIEG--NLKKFSDEELRR----EL-GLKPGDPFNPEKIEEDIERLQDYYKDKGYFFAKVSPEIDPDDNTVDLTF 73 (78)
T ss_dssp CEEEEEEEES--E-SSSHHHHHHH----CH-SS-TTSBECHHHHHHHHHHHHHHHHTTSCSEEEEEEEEEEETTEEEEEE
T ss_pred CEEEEEEEEc--CceEeCHHHHHh----hc-CCCCCCEeCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCEEEEEE
Confidence 5799999999 8 8899998885 34 699999999999999999998 8999988887655 3458899999
Q ss_pred EEeeC
Q 005510 211 QVEPN 215 (693)
Q Consensus 211 ~V~EG 215 (693)
.|+||
T Consensus 74 ~V~Eg 78 (78)
T PF07244_consen 74 NVDEG 78 (78)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99998
No 17
>PLN03138 Protein TOC75; Provisional
Probab=98.59 E-value=1.6e-06 Score=99.86 Aligned_cols=144 Identities=12% Similarity=0.087 Sum_probs=106.6
Q ss_pred EEEEEc----CcCCChhHHHHhhccCCCCcccHHHHHHHHHHHHHHHHhCCceeEeeeEE-EeeCcE--EEEEEEEE---
Q 005510 220 GLVCEG----ANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGMVSGVE-ILSGGI--IRLQVAEA--- 289 (693)
Q Consensus 220 ~I~~~G----n~~~~~~~L~~~~~~~~G~~~~~~~l~~~~~~I~~~Y~~~GY~a~V~~~~-~~~~g~--v~~~I~eg--- 289 (693)
+|.|.| ++...++.|.+.+.+++|.+|+..+|++++++|. +.|||..|.+.. ...++. |+|.|.|+
T Consensus 152 ~v~~~~~~~~~~~~~e~~l~~~i~~kpG~v~trsqLq~dv~~I~----~tG~F~~V~~~v~~~~dg~v~V~~~i~Eg~~~ 227 (796)
T PLN03138 152 EIEFFDRRRNTTVGTEDSFFEMVTLRPGGVYTKAQLQKELETLA----SCGMFEKVDLEGKTKPDGTLGLTISFTESTWQ 227 (796)
T ss_pred EEEEeccccCCCcchHHHHHHHHhcCCCCccCHHHHHHHHHHHH----hcCCceEEEEEEEeCCCCeEEEEEEEEeCCce
Confidence 899977 6677788899999999999999999999999997 999987888643 345553 78888886
Q ss_pred EEEeEE------------EEEccccCCCCCcCCCCHHHHHhhcccCC-----------------------------CCcc
Q 005510 290 EVNNIS------------IRFLDRKTGEPTKGKTRPETILRQLTTKK-----------------------------GQVY 328 (693)
Q Consensus 290 ~I~~I~------------i~~~~~~~Gn~~~~~t~~~~I~r~l~l~~-----------------------------G~~~ 328 (693)
+|.+|+ |+ || ...++..+++.|..++ ...|
T Consensus 228 ~I~~I~~i~~~~~~~~~~~~------GN---~~fs~~el~~~~~~~e~~~~~~~~~a~~~~Lp~~v~~e~f~~~~~~gkl 298 (796)
T PLN03138 228 SADSFRCINVGLMSQSKPIE------MD---EDMTDKEKMEYYRSQEKDYKRRIRKARPCLLPKSVRREVLGMLRDQGKV 298 (796)
T ss_pred eeeeeeecccccccccceee------CC---cccCHHHHHHHhhccccccccccccccccccchHHHHHHHhhhccCCcC
Confidence 788888 77 77 3455554444443322 2249
Q ss_pred chHhHHHHHHHHH----hCCCcccceeeeecCCCCCeEEEEEEEEEcCCceEEEe
Q 005510 329 SMLQGKRDVETVL----TMGIMEDVSIIPQPAGDTGKVDLIMNVVERPSGGFSAG 379 (693)
Q Consensus 329 ~~~~l~~~~~~L~----~lg~F~~V~i~~~~~~~~~~v~l~i~V~E~~~~~~~~g 379 (693)
|.++|++++++|. +.||. .++|.+.+. .+.++|++.|.|+....+.+-
T Consensus 299 N~e~Lq~die~I~~~Y~d~GYa-fa~V~~~~~--id~g~Vtl~V~EG~i~~I~V~ 350 (796)
T PLN03138 299 SARLLQRIRDRVQKWYHDEGYA-CAQVVNFGN--LNTNEVVCEVVEGDITKVVIQ 350 (796)
T ss_pred CHHHHHHHHHHHHHHHHhCCCc-eEEEecccc--cCCceEEEEEecccEEEEEEE
Confidence 9999999998874 57884 255554433 233778999999998766653
No 18
>TIGR00992 3a0901s03IAP75 chloroplast envelope protein translocase, IAP75 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the TOC IAP75 protein.
Probab=98.46 E-value=1.4e-06 Score=102.28 Aligned_cols=155 Identities=19% Similarity=0.197 Sum_probs=108.6
Q ss_pred ccccCccccceEEE-EEEEeCC------CCccChhhHHHHHHHHhhccCCC-CccCHHHHHHHHHHHH----HcCccceE
Q 005510 128 SVSRSDEERVLISE-VLVRNKD------GEELERKDLETEALTALKACRAN-SALTVREVQEDVHRII----DSGYFCSC 195 (693)
Q Consensus 128 ~~~~~~~e~~~I~~-I~i~G~~------N~~i~~~~l~~~~~~~l~~~~~g-~~~~~~~l~~d~~~L~----~~GYf~a~ 195 (693)
+.+.+|.|+|.|.+ |+|+|.. |..++.+.|++ .+ ..+.| ..++...|++++++|. ++||..+.
T Consensus 171 ~v~~~V~enP~~~~~v~~~g~~~~~~~~~~~lp~~~l~e----~~-~~~~G~~~ln~~~L~~~~~~I~~~Y~~~GY~~A~ 245 (718)
T TIGR00992 171 DVDMEVKEKPEFTRRLEIRYKRRIAEARPCLLPQEVVDE----TF-GMLYGQGIVSARLLQEIRDRVQEWYHNEGYACAQ 245 (718)
T ss_pred EEEEEEecCCEEEEEEEEeecccccccccccCCHHHHHH----Hh-ccccCCeecCHHHHHHHHHHHHHHHHHCCceeEE
Confidence 45888999999999 9998721 23355665654 23 46788 9999999999999984 79999888
Q ss_pred eEEEEecCCcEEEEEEEeeCCc--eE--EEEEEcCc---CCChhHHHHhhc--cCCCCcccHHHHHHHHHHHHHHHHhCC
Q 005510 196 MPVAVDTRDGIRLVFQVEPNQE--FH--GLVCEGAN---VLPTKFVEDAFR--DGYGKVVNIRRLDEVITSINGWYMERG 266 (693)
Q Consensus 196 v~~~~~~~~~v~l~~~V~EG~~--i~--~I~~~Gn~---~~~~~~L~~~~~--~~~G~~~~~~~l~~~~~~I~~~Y~~~G 266 (693)
|......... .|+|.|.||+. |+ .|...||. ...+..+++.+. +++|++|+..+|++++++|. +-|
T Consensus 246 V~~~~~~~~~-~V~l~V~EG~i~~I~V~~i~~~Gn~~~G~T~~~vI~Rel~~~lk~G~~fn~~~Le~~~~rL~----~lg 320 (718)
T TIGR00992 246 VVNFGNLNTD-EVVCEVVEGDITNLQIQFFDKLGNVVEGNTRDPVVTRELPKQLKPGDVFNIEAGKTALQNIN----SLG 320 (718)
T ss_pred EeccCcCCCC-EEEEEEeccceeEEEEEEecccCccccCccchHHHHHHHHhccCCCCcCCHHHHHHHHHHHH----cCC
Confidence 7544221222 89999999993 22 23345664 334566888888 89999999999999888876 445
Q ss_pred ce--eEeeeEEEe-eCc--EEEEEEEEEEEE
Q 005510 267 LF--GMVSGVEIL-SGG--IIRLQVAEAEVN 292 (693)
Q Consensus 267 Y~--a~V~~~~~~-~~g--~v~~~I~eg~I~ 292 (693)
|| ++|.+.+.. +.+ .|.+.|.|..-.
T Consensus 321 ~F~~V~V~~~p~~~~~g~v~V~V~V~E~~~~ 351 (718)
T TIGR00992 321 LFSNIEVNPRPDEMNEGEIIVEIKLKELEQK 351 (718)
T ss_pred CcccceeeccCCCCCCCeEEEEEEEEECCCC
Confidence 64 555543322 233 377788886444
No 19
>COG2831 FhaC Hemolysin activation/secretion protein [Intracellular trafficking and secretion]
Probab=98.14 E-value=0.00033 Score=79.89 Aligned_cols=156 Identities=14% Similarity=0.157 Sum_probs=111.9
Q ss_pred ccccceEEEEEEEeCCCCccChhhHHHHHHHHhhccCCCCccCHHHHHHHHHHHH----HcCccceEeEEEEe-cCCcEE
Q 005510 133 DEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRII----DSGYFCSCMPVAVD-TRDGIR 207 (693)
Q Consensus 133 ~~e~~~I~~I~i~G~~N~~i~~~~l~~~~~~~l~~~~~g~~~~~~~l~~d~~~L~----~~GYf~a~v~~~~~-~~~~v~ 207 (693)
+.++..|++|+++| |......+|++.+ .--.|..+..+.|..-.++|. ++||-.+.+..... -+++ +
T Consensus 69 E~~~f~I~~i~l~g--~~~~~~~~l~~~~-----~~~~g~~l~~~~l~~l~~~lt~~y~~~GYvtsra~lp~Q~i~~G-~ 140 (554)
T COG2831 69 ETPCFPINRIELEG--NTLLDALELQAIL-----APYLGRCLGLADLNQLASALTNLYIDRGYVTTRALLPPQDLKSG-T 140 (554)
T ss_pred CCceEEEEEEEEeC--CcccChHHHHHhh-----HHhhCCccCHHHHHHHHHHHHHHHHhCCcEEEEEEcCCCcccCC-e
Confidence 33578999999999 8988888888632 233678888888777776663 89998777654422 2333 5
Q ss_pred EEEEEeeCCceEEEEEEcCcCCChhHHHHhhccCCCCcccHHHHHHHHHHHHHHHHhCCceeEeeeEEEeeCcEEEEEEE
Q 005510 208 LVFQVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGMVSGVEILSGGIIRLQVA 287 (693)
Q Consensus 208 l~~~V~EG~~i~~I~~~Gn~~~~~~~L~~~~~~~~G~~~~~~~l~~~~~~I~~~Y~~~GY~a~V~~~~~~~~g~v~~~I~ 287 (693)
|.+.|.||. +.+|++.|++......+...+..+.|++++..+|++..+.++..-..+ =.+.+.|-+..-.-+|.+++.
T Consensus 141 l~l~VveG~-i~~i~i~g~~~~~~~~~~~~~p~~~g~~Ln~~~lEq~l~~l~~~P~~q-a~~~l~pg~~~G~S~l~i~~~ 218 (554)
T COG2831 141 LRLQVVEGR-IEDIRITGDSDLRSVALRSLFPAHRGDPLNLRDLEQGLELLNRLPGVQ-ADAELVPGSEPGESDLVIKVQ 218 (554)
T ss_pred EEEEEeceE-eeeEEEcCCCccchhhHHhhccccCCCCCCHHHHHHHHHHhhhCcccc-ceeEEccCCCCCccEEEEEee
Confidence 889999997 889999999887778888999999999999999999999887655543 112233322111125888888
Q ss_pred EEEEEeEEEEE
Q 005510 288 EAEVNNISIRF 298 (693)
Q Consensus 288 eg~I~~I~i~~ 298 (693)
+++-=.+.+..
T Consensus 219 ~~~~~~~~~~~ 229 (554)
T COG2831 219 QGKPWRVSASA 229 (554)
T ss_pred eCCCeEEEEEe
Confidence 86443455553
No 20
>COG0729 Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=97.43 E-value=0.001 Score=76.00 Aligned_cols=151 Identities=15% Similarity=0.271 Sum_probs=108.2
Q ss_pred ccCcccc--ceEEEEEEEeCCCCccChhhHHHHHHHHhhccCCCCccCHHHHHHHHHHHH----HcCccceEeEE---EE
Q 005510 130 SRSDEER--VLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRII----DSGYFCSCMPV---AV 200 (693)
Q Consensus 130 ~~~~~e~--~~I~~I~i~G~~N~~i~~~~l~~~~~~~l~~~~~g~~~~~~~l~~d~~~L~----~~GYf~a~v~~---~~ 200 (693)
.+..+|. +.+..+.+.| ..+.+..++.....+ ..+.|..++...+......+. ++||+++.++. .+
T Consensus 107 ~v~pg~~~~i~~~~~v~~G---~a~~d~~~~~~~~~~--~~~~G~~~~~~~~~n~k~~i~~~~~~~gy~~a~~~~~r~~v 181 (594)
T COG0729 107 KVTPGEPTPIAVVIVVLPG---PAFTDGDYRLLGDAA--GPKEGEDLNQGTYENAKSSIVRALLRKGYFLARFTKSRLVV 181 (594)
T ss_pred ecCCCCCcccceeeeeccc---ccccChhhhhhhhhh--ccccCCccccchhhhhHHHHHHHHHHcCcchhccccccccc
Confidence 3444444 4455555567 555555555433222 356888888887777766653 89999999853 23
Q ss_pred -ecCCcEEEEEEEeeCCceE--EEEEEcCcCCChhHHHHhhccCCCCcccHHHHHHHHHHHHHHHHhCCceeEee--eEE
Q 005510 201 -DTRDGIRLVFQVEPNQEFH--GLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGMVS--GVE 275 (693)
Q Consensus 201 -~~~~~v~l~~~V~EG~~i~--~I~~~Gn~~~~~~~L~~~~~~~~G~~~~~~~l~~~~~~I~~~Y~~~GY~a~V~--~~~ 275 (693)
...+.+.+.+.++.|+++. .|+|+|...++++.++..+..+.|++|.++.|.+ +++.|++.+||..|. +..
T Consensus 182 ~~~~~~a~~~~~~dsG~~y~~g~v~~~g~~r~~~~~~~~~~~~~~G~~Y~~~~l~~----~~~rl~~~~~F~sv~v~~~~ 257 (594)
T COG0729 182 DPATHTADVDLNYDSGRRYRFGPVTVEGSQRIDEEYLQNLVPFKYGLPYDPEDLAE----LNQRLRQTGYFSSVVVQPAD 257 (594)
T ss_pred ccccceEEEEEeecccceEEeCcEEEccceecCHHHHhhccccCCCCcCCHHHHHH----HHHHHhhcCceeeEEEecCc
Confidence 3567899999999999987 9999999999999999999999999999888877 777788999975443 322
Q ss_pred --EeeCcE--EEEEEEEE
Q 005510 276 --ILSGGI--IRLQVAEA 289 (693)
Q Consensus 276 --~~~~g~--v~~~I~eg 289 (693)
..+++. |.+.+.|.
T Consensus 258 ~~~~~~~~~pv~v~~~~r 275 (594)
T COG0729 258 KQAGPDGLLPVKVSVSER 275 (594)
T ss_pred cccCcCceeceEEEeccc
Confidence 233444 55666664
No 21
>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO). ShlB is important in the secretion and activation of the haemolysin ShlA. It has been postulated that the POTRA domain has a chaperone-like function over ShlA; it may fold back into the C-terminal beta-barrel channel []. ; PDB: 2X8X_X 2QDZ_A 3NJT_A 3MC8_A 3MC9_B.
Probab=95.90 E-value=0.044 Score=45.15 Aligned_cols=70 Identities=20% Similarity=0.270 Sum_probs=47.6
Q ss_pred eEEEEEEEeCCCCccChhhHHHHHHHHhhccCCCCccCHHHHHHHHHHHH----HcCccceEeEEEEe-cCCcEEEEEEE
Q 005510 138 LISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRII----DSGYFCSCMPVAVD-TRDGIRLVFQV 212 (693)
Q Consensus 138 ~I~~I~i~G~~N~~i~~~~l~~~~~~~l~~~~~g~~~~~~~l~~d~~~L~----~~GYf~a~v~~~~~-~~~~v~l~~~V 212 (693)
.|++|.|+| |..++.++|.+.+ .-..|..++.+.+++..++|. ++||..+.+..... -.++ .|++.|
T Consensus 2 ~i~~i~~~G--~~~~~~~~l~~~~-----~~~~g~~l~~~~l~~~~~~l~~~y~~~GY~~s~v~~p~q~i~~G-~l~i~V 73 (76)
T PF08479_consen 2 PIKGIRFEG--NTLLPEEELQAIL-----APYIGRCLTLADLQQLADALTNYYREKGYITSRVYLPPQDISDG-VLTIRV 73 (76)
T ss_dssp ---EEEEES---TSSSCCHHHHHH-----GGGTTSBB-HHHHHHHHHHHHHHHHHTT-TT-EEEEEEEEETTS-EEEEEE
T ss_pred CeEEEEEEC--CCcCCHHHHHHHH-----HHhcCCCcCHHHHHHHHHHHHHHHHHcCceEEEEEeCCeecCCC-EEEEEE
Confidence 589999999 8999999888632 345789999999999888883 89999888865442 3455 488888
Q ss_pred eeC
Q 005510 213 EPN 215 (693)
Q Consensus 213 ~EG 215 (693)
.||
T Consensus 74 ~eG 76 (76)
T PF08479_consen 74 VEG 76 (76)
T ss_dssp E--
T ss_pred EcC
Confidence 887
No 22
>PF11854 DUF3374: Protein of unknown function (DUF3374); InterPro: IPR020016 Members of this protein family are integral proteins of the bacterial outer membrane, associated with multi-haem c-type cytochromes involved in electron transfer [, ]. The MtrB protein of Shewanella oneidensis MR-1 (SO1776) has been shown to form a complex with 1:1:1 stochiometry with the small, periplasmic decahaem cytochrome MtrA and large, surface-exposed decahaem cytochrome MtrC.
Probab=90.72 E-value=40 Score=39.57 Aligned_cols=192 Identities=14% Similarity=0.047 Sum_probs=101.8
Q ss_pred CceEEeEEEEEEEEEeecCCCeEEEEEEEEEEEeeecCCCC----cc------c--ccccCCceeeecccCCceeEEEEE
Q 005510 465 SSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGN----PI------I--KDFYSSPLTASGKTNDEMLIAKFE 532 (693)
Q Consensus 465 ~~~~~~~~g~~l~l~~~l~~~~~~~~gl~~~~~~~~~~~~~----~~------~--~~~~~~~l~~~~d~rD~~~~P~~g 532 (693)
..|..++..+++...|++.+.+++.+|+.+++.+-...... .. . .+-....+.++|..||..-+..
T Consensus 333 ~~~d~tk~~~~~~a~YRl~~~~~l~~gy~~e~~dR~~~~re~T~E~~~~~~~~~r~~~~~~l~~~~~ys~R~GS~Y~~-- 410 (637)
T PF11854_consen 333 TPYDYTKQNAKLDADYRLARGYRLEAGYEYEDWDRSYQDRESTDENTLWAKLRYRPSDWLSLRLKYSYSDRDGSEYQP-- 410 (637)
T ss_pred CcccccceeeeEEeEEEecCCcEEEEeeeEeeeeccchhccceeeeeEEEEEEeeeccceEEEEEEEEeeccCCccCC--
Confidence 45666777889999999999999999999988744221100 00 0 0112233444455444322110
Q ss_pred EEecCCCCCCCceEEEEeeecCCcC----CCcceeEEEEEEEEEeEEecCceEEEEEeeceeccCCCccCceecCCCCCc
Q 005510 533 SVYTGSGDQGSSMFVFNMEQGLPVW----PEWLFFNRVNARARKGVEIGPARLLLSLSGGHVVGNFSPHEAFAIGGTNSV 608 (693)
Q Consensus 533 ~~~~~~G~~g~~~~~~~~~~~~~~~----~~~~~f~k~~~~~~~y~~l~~~~l~~~~~~G~~~g~lp~~e~F~lGG~~sv 608 (693)
.. .......+.+ ..|.+=.++++.+.+ .+. ..|.+.+.+.+..++-+-.+ +
T Consensus 411 -----~~--------~t~~~~~~~lRky~LADR~R~~~~l~~~~--~~~-~~l~l~~~~~~~~DdY~~t~---~------ 465 (637)
T PF11854_consen 411 -----NE--------WTSSESNPLLRKYYLADRDRTKLELRANY--SPF-EDLSLSLSGRYANDDYDDTD---I------ 465 (637)
T ss_pred -----Cc--------cccCCCChhhhcccccccccceeEEEeee--ccc-cceEEeEEEEEccCCCCCcc---c------
Confidence 00 0000001111 012222334443333 111 23666777766665543221 1
Q ss_pred cCCcCCCccccceEEEEeEEEEEecCCceeEEEEEEeeecCCCCC-----CCC-C--CCCCcCccceeEEEEEecCCCCc
Q 005510 609 RGYEEGAVGSGRSYVVGSGEISFPMLGPVEGVIFSDYGTDLGSGP-----SVP-G--GFLYDWPHVSYAFKVCSLPPPPR 680 (693)
Q Consensus 609 RGy~~~~lg~G~~~~~~s~Elr~pl~~~l~~~~F~D~G~v~~~~~-----~~~-~--~~~~~~~s~G~Glr~~tpiGPi~ 680 (693)
.+. ....+..++.+.|.+.+.+.+.+|+-.-+.-.... ..+ + +-...-..+|+|+.|.-.| +-+
T Consensus 466 ------GL~-~~~~~~~~ld~~y~~~~~l~~~af~~~q~~~s~Q~gs~~~~~~~W~~~~~D~~~~~G~G~~~~~l~-~~k 537 (637)
T PF11854_consen 466 ------GLT-ESDDYGYDLDASYQPSDDLSLYAFYNQQWIDSDQAGSQNFSTPDWTSDTEDKVTTVGAGFSYQGLM-DDK 537 (637)
T ss_pred ------ccc-cceeeeeeeeEEEEECCCeEEEEEEEeEeehhhhccccCccCCCccccccceeEEEEeceEeeccc-Ccc
Confidence 111 22344678999999999999999987654422110 000 1 0011246799999998544 457
Q ss_pred ccceeeccccc
Q 005510 681 LQPYFVYLFCF 691 (693)
Q Consensus 681 ~dir~dy~~~~ 691 (693)
+.+.+||.|..
T Consensus 538 L~lg~dYsys~ 548 (637)
T PF11854_consen 538 LSLGLDYSYSD 548 (637)
T ss_pred EEEeeeEEEec
Confidence 88999998864
No 23
>PF08478 POTRA_1: POTRA domain, FtsQ-type; InterPro: IPR013685 FtsQ/DivIB bacterial division proteins (IPR005548 from INTERPRO) contain an N-terminal POTRA domain (for polypeptide-transport-associated domain). This is found in different types of proteins, usually associated with a transmembrane beta-barrel. FtsQ/DivIB may have chaperone-like roles, which has also been postulated for the POTRA domain in other contexts []. ; PDB: 2ALJ_A 2VH1_B 3J00_Z 2VH2_B.
Probab=88.23 E-value=1.3 Score=35.39 Aligned_cols=68 Identities=25% Similarity=0.299 Sum_probs=50.9
Q ss_pred EEEeEEEEEccccCCCCCcCCCCHHHHHhhcccCCCCccchHhHHHHHHHHHhCCCcccceeeeecCCCCCeEEEEEEEE
Q 005510 290 EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVV 369 (693)
Q Consensus 290 ~I~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l~l~~G~~~~~~~l~~~~~~L~~lg~F~~V~i~~~~~~~~~~v~l~i~V~ 369 (693)
.|.+|.|. |+ ...+.+.|...+.+..|+.+=.-+.++..++|.+.++.++|.+.-.- +++ |.|.|+
T Consensus 2 ~v~~I~V~------G~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~p~V~~v~V~r~~---P~~--l~I~V~ 67 (69)
T PF08478_consen 2 RVKKIEVS------GN---SYLSKEEILQALGIQKGKNLFSLDLKKIEQRLEKLPWVKSVSVSRRF---PNT--LEIKVK 67 (69)
T ss_dssp S--EEEEE------S----SSS-HHHHHHHHCTTSTTTCCCSHHHHHHHCCCCTTTEEEEEEEEET---TTE--EEEEEE
T ss_pred CccEEEEE------CC---CcCCHHHHHHHhCcCCCCeEEEECHHHHHHHHHcCCCEEEEEEEEeC---CCE--EEEEEE
Confidence 36789999 98 68999999999999989877777777778888889999999987663 565 466666
Q ss_pred Ec
Q 005510 370 ER 371 (693)
Q Consensus 370 E~ 371 (693)
|+
T Consensus 68 Er 69 (69)
T PF08478_consen 68 ER 69 (69)
T ss_dssp E-
T ss_pred eC
Confidence 63
No 24
>PF08478 POTRA_1: POTRA domain, FtsQ-type; InterPro: IPR013685 FtsQ/DivIB bacterial division proteins (IPR005548 from INTERPRO) contain an N-terminal POTRA domain (for polypeptide-transport-associated domain). This is found in different types of proteins, usually associated with a transmembrane beta-barrel. FtsQ/DivIB may have chaperone-like roles, which has also been postulated for the POTRA domain in other contexts []. ; PDB: 2ALJ_A 2VH1_B 3J00_Z 2VH2_B.
Probab=83.68 E-value=3.2 Score=33.04 Aligned_cols=67 Identities=16% Similarity=0.091 Sum_probs=42.2
Q ss_pred ceEEEEEEcCcCCChhHHHHhhccCCCCcccHHHHHHHHHHHHHHHHhCCceeEeeeEEEeeCcEEEEEEEE
Q 005510 217 EFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGMVSGVEILSGGIIRLQVAE 288 (693)
Q Consensus 217 ~i~~I~~~Gn~~~~~~~L~~~~~~~~G~~~~~~~l~~~~~~I~~~Y~~~GY~a~V~~~~~~~~g~v~~~I~e 288 (693)
+++.|.++|+..++.+++.+.+....|+.+-.-...+ +.+...+..+...|.-... -.+.|.+.|.|
T Consensus 2 ~v~~I~V~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~l~~~p~V~~v~V~r~-~P~~l~I~V~E 68 (69)
T PF08478_consen 2 RVKKIEVSGNSYLSKEEILQALGIQKGKNLFSLDLKK----IEQRLEKLPWVKSVSVSRR-FPNTLEIKVKE 68 (69)
T ss_dssp S--EEEEES-SSS-HHHHHHHHCTTSTTTCCCSHHHH----HHHCCCCTTTEEEEEEEEE-TTTEEEEEEEE
T ss_pred CccEEEEECCCcCCHHHHHHHhCcCCCCeEEEECHHH----HHHHHHcCCCEEEEEEEEe-CCCEEEEEEEe
Confidence 3678999999999999999999999888665444444 5555556666443332111 23467777766
No 25
>PRK05529 cell division protein FtsQ; Provisional
Probab=83.40 E-value=6.3 Score=40.61 Aligned_cols=71 Identities=18% Similarity=0.418 Sum_probs=58.0
Q ss_pred EEEEeEEEEEccccCCCCCcCCCCHHHHHhhcccCCCCccchHhHHHHHHHHHhCCCcccceeeeecCCCCCeEEEEEEE
Q 005510 289 AEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNV 368 (693)
Q Consensus 289 g~I~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l~l~~G~~~~~~~l~~~~~~L~~lg~F~~V~i~~~~~~~~~~v~l~i~V 368 (693)
..|.+|.|+ |+ ..++.+.|+..+....|+.+-.-+++...++|.+..+.++|.++-.. +++ |.|+|
T Consensus 61 ~~v~~I~V~------Gn---~~vs~~eI~~~~~~~~g~~l~~vd~~~~~~~l~~~P~V~sa~V~r~~---P~t--l~I~V 126 (255)
T PRK05529 61 LALRSIEVA------GN---MRVKPQDIVAALRDQFGKPLPLVDPETVRKKLAAFPLIRSYSVESKP---PGT--IVVRV 126 (255)
T ss_pred eEEEEEEEE------CC---ccCCHHHHHHHhcccCCCcceeECHHHHHHHHhcCCCEeEEEEEEeC---CCE--EEEEE
Confidence 378899999 99 58999999999988889877666677777888899999999887663 455 57888
Q ss_pred EEcCC
Q 005510 369 VERPS 373 (693)
Q Consensus 369 ~E~~~ 373 (693)
+|+.+
T Consensus 127 ~Er~p 131 (255)
T PRK05529 127 VERVP 131 (255)
T ss_pred EEeee
Confidence 99887
No 26
>PF10082 DUF2320: Uncharacterized protein conserved in bacteria (DUF2320); InterPro: IPR018759 This domain has no known function.
Probab=70.52 E-value=1.6e+02 Score=31.83 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=16.5
Q ss_pred eEEEEEEEEEeecCCCeEEEEEEEEEEE
Q 005510 470 GRVTAGMEFSRPIRPKWSGTVGLIFQHS 497 (693)
Q Consensus 470 ~~~g~~l~l~~~l~~~~~~~~gl~~~~~ 497 (693)
+.+.+++++.|.+.++|.++++++|+..
T Consensus 332 ~~~~~~~~~~y~~~r~~~~~~~y~~~~~ 359 (381)
T PF10082_consen 332 DTYSAGLGLTYRLNRWLSLSAGYRYEDR 359 (381)
T ss_pred eEEEEEEEEEEEecCCEEEEEEEEEEEe
Confidence 3445566666666666666666665554
No 27
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=63.65 E-value=21 Score=37.07 Aligned_cols=70 Identities=21% Similarity=0.312 Sum_probs=58.3
Q ss_pred EEEeEEEEEccccCCCCCcCCCCHHHHHhhcccCCCCccchHhHHHHHHHHHhCCCcccceeeeecCCCCCeEEEEEEEE
Q 005510 290 EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVV 369 (693)
Q Consensus 290 ~I~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l~l~~G~~~~~~~l~~~~~~L~~lg~F~~V~i~~~~~~~~~~v~l~i~V~ 369 (693)
.|.+|.++ || ..++++.|++.+.+..+..+=.-++++..++|...+..++|.+.-.- |++ |.|.|+
T Consensus 61 ~i~~v~v~------Gn---~~~s~~~I~~~~~l~~~~~~~~ld~~~~~~~i~~~PwVk~a~V~r~~---Pnt--v~I~v~ 126 (269)
T COG1589 61 PIRKVSVS------GN---NQVSEEDILKALGLDGGTSFLTLDLNAIRENIEKLPWVKSAEVRRQF---PNT--LEIEVV 126 (269)
T ss_pred cceEEEEe------cC---cccCHHHHHHHhhhccCCceEEEcHHHHHHHHHhCCCeEEEEEEEeC---CCc--EEEEEE
Confidence 68899999 99 57779999999999999887778888888899999999988887642 455 578888
Q ss_pred EcCC
Q 005510 370 ERPS 373 (693)
Q Consensus 370 E~~~ 373 (693)
|+.+
T Consensus 127 Er~p 130 (269)
T COG1589 127 EREP 130 (269)
T ss_pred Eeee
Confidence 9876
No 28
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=59.73 E-value=22 Score=29.73 Aligned_cols=54 Identities=13% Similarity=0.140 Sum_probs=38.8
Q ss_pred CCcEEEEEEEeeCCceEEEEEEcCcCCChhHHHHhhccCCCCcccHHHHHHHHHHH
Q 005510 203 RDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSI 258 (693)
Q Consensus 203 ~~~v~l~~~V~EG~~i~~I~~~Gn~~~~~~~L~~~~~~~~G~~~~~~~l~~~~~~I 258 (693)
-+.+.|.++|+.| .|++|.|.|.-... ..+.++-..-.|.+|+.+.+.+..+.+
T Consensus 15 ~G~v~v~~~V~~G-~I~~i~i~gDf~~~-~~i~~le~~L~G~~~~~~~i~~~l~~~ 68 (86)
T PF10437_consen 15 WGTVEVHLNVKNG-IIKDIKIYGDFFGP-EDIEELEEALIGCPYDREAIKEALNSV 68 (86)
T ss_dssp TEEEEEEEEEETT-EEEEEEEEECBS-C-CCHHHHHHHHTTCBSSHHHHHHHHHHC
T ss_pred CceEEEEEEEECC-EEEEEEEECCCCCc-hHHHHHHHHHHhcCCCHHHHHHHHHHh
Confidence 4778999999755 48999999975433 234443333479999999998877765
No 29
>PF11854 DUF3374: Protein of unknown function (DUF3374); InterPro: IPR020016 Members of this protein family are integral proteins of the bacterial outer membrane, associated with multi-haem c-type cytochromes involved in electron transfer [, ]. The MtrB protein of Shewanella oneidensis MR-1 (SO1776) has been shown to form a complex with 1:1:1 stochiometry with the small, periplasmic decahaem cytochrome MtrA and large, surface-exposed decahaem cytochrome MtrC.
Probab=58.40 E-value=1.4e+02 Score=35.10 Aligned_cols=61 Identities=8% Similarity=0.007 Sum_probs=41.2
Q ss_pred eEEEEEEEeeccCCc--cccCCCCCCCceEEeEEEEEEEEEeecCCCeEEEEEEEEEEEeeec
Q 005510 441 TSRTIMVQNSRTPGT--HVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARD 501 (693)
Q Consensus 441 ~s~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~l~l~~~l~~~~~~~~gl~~~~~~~~~ 501 (693)
+.+++++.+++.... +..+....+.++......+.+...|++++++.+.+.+.||+....+
T Consensus 538 L~lg~dYsys~~~s~~~~~~~~~~~~pd~~~~~h~l~~~~~y~ls~~~~lrl~y~yEr~~~~D 600 (637)
T PF11854_consen 538 LSLGLDYSYSDSDSDTDVTQGGSGPYPDYYSRQHNLNLYARYQLSKNMSLRLDYRYERYSDTD 600 (637)
T ss_pred EEEeeeEEEecCccceEeecccccCCCCceeeEEEEEEEEEEEeCCCeEEEEEEEEEeeeccc
Confidence 566666655543322 1111123355677778888999999999999999999999886654
No 30
>PF15603 Imm45: Immunity protein 45
Probab=56.81 E-value=21 Score=29.84 Aligned_cols=61 Identities=16% Similarity=0.335 Sum_probs=44.7
Q ss_pred EEEEEEeeCCceE---EEEEEcCc-----CCChhHHHHhhccCCCCcccHHHHHHHHHHHHHHHHhCCc
Q 005510 207 RLVFQVEPNQEFH---GLVCEGAN-----VLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGL 267 (693)
Q Consensus 207 ~l~~~V~EG~~i~---~I~~~Gn~-----~~~~~~L~~~~~~~~G~~~~~~~l~~~~~~I~~~Y~~~GY 267 (693)
.++|.+.+|.+++ +.-+.+++ .+-.+.+...-.+..+.+++...+++.+++|.++..++|.
T Consensus 9 ~i~~el~~G~~~~~~GE~l~~~~~~~~~Fvvy~~si~~We~P~e~~~it~~e~q~II~aI~~~~~~~~~ 77 (82)
T PF15603_consen 9 YITFELEEGARRKAQGEMLLTGNDNDGDFVVYKDSIKNWEPPHENEPITIAERQKIIEAIEKYFSERGM 77 (82)
T ss_pred ceEEEecCCEEEEEeeeEEEeccCCCcCEEEEccccccccCCCCCcccCHHHHHHHHHHHHHHHhcCce
Confidence 4778888887755 34444221 2223445556678889999999999999999999999986
No 31
>PRK05529 cell division protein FtsQ; Provisional
Probab=53.36 E-value=45 Score=34.30 Aligned_cols=73 Identities=10% Similarity=0.113 Sum_probs=43.9
Q ss_pred cccceEEEEEEEeCCCCccChhhHHHHHHHHhhccCCCCcc---CHHHHHHHHHHHHHcCccceEeEEEEecCCcEEEEE
Q 005510 134 EERVLISEVLVRNKDGEELERKDLETEALTALKACRANSAL---TVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVF 210 (693)
Q Consensus 134 ~e~~~I~~I~i~G~~N~~i~~~~l~~~~~~~l~~~~~g~~~---~~~~l~~d~~~L~~~GYf~a~v~~~~~~~~~v~l~~ 210 (693)
.+-..|++|.|+| |+.++.++|++.+ ....|..+ +.+.+++.++ +.-+-+ .+.+...-.-.|.+
T Consensus 58 Sp~~~v~~I~V~G--n~~vs~~eI~~~~-----~~~~g~~l~~vd~~~~~~~l~---~~P~V~---sa~V~r~~P~tl~I 124 (255)
T PRK05529 58 SPLLALRSIEVAG--NMRVKPQDIVAAL-----RDQFGKPLPLVDPETVRKKLA---AFPLIR---SYSVESKPPGTIVV 124 (255)
T ss_pred CCceEEEEEEEEC--CccCCHHHHHHHh-----cccCCCcceeECHHHHHHHHh---cCCCEe---EEEEEEeCCCEEEE
Confidence 4567899999999 8999999998633 34555433 4444444443 334422 12222222235788
Q ss_pred EEeeCCceE
Q 005510 211 QVEPNQEFH 219 (693)
Q Consensus 211 ~V~EG~~i~ 219 (693)
+|+|.+++-
T Consensus 125 ~V~Er~pvA 133 (255)
T PRK05529 125 RVVERVPLA 133 (255)
T ss_pred EEEEeeeEE
Confidence 888887743
No 32
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=51.47 E-value=8.7 Score=32.23 Aligned_cols=61 Identities=21% Similarity=0.244 Sum_probs=41.0
Q ss_pred eCcE--EEEEEEEEEEEeEEEEEccccCCCCCcCCCCHHHHHhhcccCCCCccchHhHHHHHHHHHhCCCccc
Q 005510 278 SGGI--IRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMED 348 (693)
Q Consensus 278 ~~g~--v~~~I~eg~I~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l~l~~G~~~~~~~l~~~~~~L~~lg~F~~ 348 (693)
+.|. |.++|..|.|.+|.|. |... ..-.-+.|...| .|.+|+.+.+.+.+..+.-..||..
T Consensus 14 ~~G~v~v~~~V~~G~I~~i~i~------gDf~-~~~~i~~le~~L---~G~~~~~~~i~~~l~~~~~~~~~~~ 76 (86)
T PF10437_consen 14 PWGTVEVHLNVKNGIIKDIKIY------GDFF-GPEDIEELEEAL---IGCPYDREAIKEALNSVDLEDYFGN 76 (86)
T ss_dssp TTEEEEEEEEEETTEEEEEEEE------ECBS--CCCHHHHHHHH---TTCBSSHHHHHHHHHHCHGGGTCCT
T ss_pred CCceEEEEEEEECCEEEEEEEE------CCCC-CchHHHHHHHHH---HhcCCCHHHHHHHHHHhCHhhcccc
Confidence 4464 6778889999999999 6521 111123333333 6999999999999888755556553
No 33
>PRK10775 cell division protein FtsQ; Provisional
Probab=41.45 E-value=90 Score=32.55 Aligned_cols=70 Identities=16% Similarity=0.186 Sum_probs=51.2
Q ss_pred EEEeEEEEEccccCCCCCcCCCCHHHHHhhc-cc-CCCCccchHhHHHHHHHHHhCCCcccceeeeecCCCCCeEEEEEE
Q 005510 290 EVNNISIRFLDRKTGEPTKGKTRPETILRQL-TT-KKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMN 367 (693)
Q Consensus 290 ~I~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l-~l-~~G~~~~~~~l~~~~~~L~~lg~F~~V~i~~~~~~~~~~v~l~i~ 367 (693)
.|.+|.|+ |+. ..++.+.|+..+ .. .+|..| .-+++...++|.+++...+|.|+-.- |++ |.|.
T Consensus 57 pl~~V~V~------G~~--~~~~~~~I~~~i~~~~~~g~f~-~~Dl~~i~~~l~~lPWV~~a~VrR~w---Pdt--L~V~ 122 (276)
T PRK10775 57 PLSKLVVT------GER--HYTTNDDIRQAILALGAPGTFM-TQDVNIIQQQIERLPWIKQVSVRKQW---PDE--LKIH 122 (276)
T ss_pred ceeEEEEe------CCe--eeCCHHHHHHHHhhccCCCCce-EEcHHHHHHHHHcCCCeeEEEEEEeC---CCc--EEEE
Confidence 46678888 884 346777777755 32 567777 34777888889999999989887653 444 6888
Q ss_pred EEEcCC
Q 005510 368 VVERPS 373 (693)
Q Consensus 368 V~E~~~ 373 (693)
|+|..+
T Consensus 123 V~Er~P 128 (276)
T PRK10775 123 LVEYVP 128 (276)
T ss_pred EEEeec
Confidence 899887
No 34
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=37.38 E-value=96 Score=34.02 Aligned_cols=69 Identities=12% Similarity=0.104 Sum_probs=47.0
Q ss_pred eEEEEEEEeCCCCccChhhHHHHHHHHhhccCCCCc---cCHHHHHHHHHHHHHcCccceEeEEEEecCCcEEEEEEEee
Q 005510 138 LISEVLVRNKDGEELERKDLETEALTALKACRANSA---LTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEP 214 (693)
Q Consensus 138 ~I~~I~i~G~~N~~i~~~~l~~~~~~~l~~~~~g~~---~~~~~l~~d~~~L~~~GYf~a~v~~~~~~~~~v~l~~~V~E 214 (693)
.|=+|+|+| |..+++.+|++.+. .+ ++++|.. +|++.|++.+..-. ..+.+.--.-.+-++.++|.|
T Consensus 104 fIW~IeI~G--n~~~t~~~i~~~L~-e~-Gi~~G~~k~~id~~~ie~~l~~~~------~~i~WV~v~i~GTrl~i~v~E 173 (382)
T TIGR02876 104 FIWKIDITG--VKGETPYEIRKQLK-EM-GIKPGVWKFSVDVYKLERKLLDRV------PEIMWAGVRVRGTTLVIKVVE 173 (382)
T ss_pred eEEEEEEEC--CCCCCHHHHHHHHH-Hc-CCCcCeeeCCCCHHHHHHHHHhhC------CCcEEEEEEEEeEEEEEEEEe
Confidence 688999999 99999999988763 33 7888854 79999997665532 122211111235577888887
Q ss_pred CC
Q 005510 215 NQ 216 (693)
Q Consensus 215 G~ 216 (693)
..
T Consensus 174 k~ 175 (382)
T TIGR02876 174 KQ 175 (382)
T ss_pred cC
Confidence 74
No 35
>TIGR03509 OMP_MtrB_PioB decaheme-associated outer membrane protein, MtrB/PioB family. Members of this protein family are integral proteins of the bacterial outer membrane, associated with multiheme c-type cytochromes involved in electron transfer. The MtrB protein of Shewanella oneidensis MR-1 (SO1776) has been shown to form a complex with 1:1:1 stochiometry with the small, periplasmic decaheme cytochrome MtrA and large, surface-exposed decaheme cytochrome MtrC.
Probab=34.79 E-value=4.9e+02 Score=30.74 Aligned_cols=34 Identities=3% Similarity=-0.122 Sum_probs=26.1
Q ss_pred CCceEEeEEEEEEEEEeecCCCeEEEEEEEEEEE
Q 005510 464 NSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHS 497 (693)
Q Consensus 464 ~~~~~~~~~g~~l~l~~~l~~~~~~~~gl~~~~~ 497 (693)
.+.|......+.+.+.|.+.+++.+.+.+.+++.
T Consensus 575 ~pdy~~~~~~l~l~a~Y~~~~~l~l~l~~~~eny 608 (649)
T TIGR03509 575 YPDYFSNQHRLKLYGKYQLSKSSSLRLDYRYERY 608 (649)
T ss_pred CCcccceEEEEEEEEEEecCCCeEEEEEEEEEEE
Confidence 4556656778899999999999998777755554
No 36
>PF11059 DUF2860: Protein of unknown function (DUF2860); InterPro: IPR016896 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=30.59 E-value=6.7e+02 Score=26.48 Aligned_cols=66 Identities=11% Similarity=0.114 Sum_probs=37.7
Q ss_pred eeEEEEEEecccccCCCCceEEEEEEEeeccCCccccCCCCCCCceEEeEEEEEEEEEeecCCCeEEEEEEEEEEEeee
Q 005510 422 DSIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGAR 500 (693)
Q Consensus 422 ~~~~~lsy~~P~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~l~~~l~~~~~~~~gl~~~~~~~~ 500 (693)
...+.++|..|.-. . +.+..++.|...+. +......+++++.+++.+.+.+ +++.+.++|...++.
T Consensus 168 ~~~~~~~y~~~ls~--~--~~L~P~l~Y~~~dA--------dG~A~S~~~~g~~ls~~~~~~r-h~~~lt~~y~~~~Yd 233 (297)
T PF11059_consen 168 YYYLKGSYRLPLSQ--T--SFLTPSLNYTQRDA--------DGDAMSYDSYGAELSYFKRIGR-HSLALTASYSKRDYD 233 (297)
T ss_pred eEEEEEEEEEEecC--C--cEEeeEEEEEEecC--------CCceeccCccCeEEEeeeEccc-ceEEEEEeccccccc
Confidence 45788889988732 2 34555555554432 1122334567788888776654 555555555555443
No 37
>PF04338 DUF481: Protein of unknown function, DUF481; InterPro: IPR007433 This family includes several proteins of uncharacterised function.
Probab=26.54 E-value=5.9e+02 Score=24.51 Aligned_cols=32 Identities=22% Similarity=0.177 Sum_probs=21.3
Q ss_pred EEEEEEEEEeecC--C--CeEEEEEEEEEEEeeecC
Q 005510 471 RVTAGMEFSRPIR--P--KWSGTVGLIFQHSGARDE 502 (693)
Q Consensus 471 ~~g~~l~l~~~l~--~--~~~~~~gl~~~~~~~~~~ 502 (693)
+..++++++|.+. + .+.+.+|+.+++.+....
T Consensus 85 r~~~~~G~Gy~~~~~~~~~l~~~~G~~~~~~~~~~~ 120 (210)
T PF04338_consen 85 RYTLGAGLGYRLINTDRHKLSVEAGPGYRYEDYTDG 120 (210)
T ss_pred EEEEEeEeeEEEEECCCEEEEEEECCcEEEEEeccc
Confidence 5567777777773 2 456777777887776543
No 38
>TIGR00545 lipoyltrans lipoyltransferase and lipoate-protein ligase. One member of this group of proteins is bovine lipoyltransferase, which transfers the lipoyl group from lipoyl-AMP to the specific Lys of lipoate-dependent enzymes. However, it does not first activate lipoic acid with ATP to create lipoyl-AMP and pyrophosphate. Another member of this group, lipoate-protein ligase A from E. coli, catalyzes both the activation and the transfer of lipoate. Homology between the two is full-length, except for the bovine mitochondrial targeting signal, but is strongest toward the N-terminus.
Probab=26.00 E-value=2.2e+02 Score=30.40 Aligned_cols=50 Identities=16% Similarity=0.183 Sum_probs=34.7
Q ss_pred EEEEEEEEEEEeEEEEEccccCCCCCcCCCCHHHHHhhcccCCCCccchHhHHHHHHHHH
Q 005510 282 IRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVL 341 (693)
Q Consensus 282 v~~~I~eg~I~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l~l~~G~~~~~~~l~~~~~~L~ 341 (693)
+.+.|..|.|.+|.|. |. -.....+...-..-.|.+|+.+.+.+.+..+.
T Consensus 262 i~l~v~~g~I~~~~i~------gD----f~~~~~~~~l~~~L~G~~~~~~~i~~~l~~~~ 311 (324)
T TIGR00545 262 LHVQVEKGKIVDCKFF------GD----FLSVADITPVTNRLIGQKYDYDTFAKELENLD 311 (324)
T ss_pred EEEEEeCCEEEEEEEE------CC----CCCcccHHHHHHHhCCCccCHHHHHHHHHhhh
Confidence 5667888999999998 75 22222233222222699999999999887764
No 39
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=25.13 E-value=1.7e+02 Score=30.30 Aligned_cols=118 Identities=10% Similarity=0.123 Sum_probs=62.8
Q ss_pred ceEEEEEEEeCCCCccChhhHHHHHHHHhhccCCCCcc---CHHHHHHHHHHHHHcCccceEeEEEEecCCcEEEEEEEe
Q 005510 137 VLISEVLVRNKDGEELERKDLETEALTALKACRANSAL---TVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVE 213 (693)
Q Consensus 137 ~~I~~I~i~G~~N~~i~~~~l~~~~~~~l~~~~~g~~~---~~~~l~~d~~~L~~~GYf~a~v~~~~~~~~~v~l~~~V~ 213 (693)
..|++|.|+| |..++++++++.+ .+..+..| +.+.+++.++++ -+-... ++.-.=++ +|.+.|+
T Consensus 60 ~~i~~v~v~G--n~~~s~~~I~~~~-----~l~~~~~~~~ld~~~~~~~i~~~---PwVk~a-~V~r~~Pn--tv~I~v~ 126 (269)
T COG1589 60 FPIRKVSVSG--NNQVSEEDILKAL-----GLDGGTSFLTLDLNAIRENIEKL---PWVKSA-EVRRQFPN--TLEIEVV 126 (269)
T ss_pred ccceEEEEec--CcccCHHHHHHHh-----hhccCCceEEEcHHHHHHHHHhC---CCeEEE-EEEEeCCC--cEEEEEE
Confidence 3799999999 9999988888643 34444443 556666655553 332111 11111233 4788888
Q ss_pred eCCceE---------EEEEEcCcCCChhHHH--HhhccCCCCcccHHHHHHHHHHHHHHHHhCCc
Q 005510 214 PNQEFH---------GLVCEGANVLPTKFVE--DAFRDGYGKVVNIRRLDEVITSINGWYMERGL 267 (693)
Q Consensus 214 EG~~i~---------~I~~~Gn~~~~~~~L~--~~~~~~~G~~~~~~~l~~~~~~I~~~Y~~~GY 267 (693)
|-+++- -|.-.|+......+.. ..+..-.|-......+.+..+.+..+.+..++
T Consensus 127 Er~piA~w~~~~~~~~i~~~G~~~~~~~~~~~~~~lp~~~g~~~~~~~v~~~~~~~~~~~~~~~~ 191 (269)
T COG1589 127 EREPIAYWQRNDDYHLIDENGNLFIVPSDRPKLPVLPLLVGPEGADPKVKALLEQLSALLALLGE 191 (269)
T ss_pred EeeeEEEEecCCCcceEcCCCcEEeccCCcccccceeeccCCchhhHHHHHHHHHHHHHHHhhcc
Confidence 888743 2333454211111111 11222344344445555555566666667666
No 40
>TIGR00545 lipoyltrans lipoyltransferase and lipoate-protein ligase. One member of this group of proteins is bovine lipoyltransferase, which transfers the lipoyl group from lipoyl-AMP to the specific Lys of lipoate-dependent enzymes. However, it does not first activate lipoic acid with ATP to create lipoyl-AMP and pyrophosphate. Another member of this group, lipoate-protein ligase A from E. coli, catalyzes both the activation and the transfer of lipoate. Homology between the two is full-length, except for the bovine mitochondrial targeting signal, but is strongest toward the N-terminus.
Probab=24.76 E-value=1.6e+02 Score=31.51 Aligned_cols=54 Identities=13% Similarity=0.130 Sum_probs=41.0
Q ss_pred CCcEEEEEEEeeCCceEEEEEEcCcCCChhHHHHhhccCCCCcccHHHHHHHHHHH
Q 005510 203 RDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSI 258 (693)
Q Consensus 203 ~~~v~l~~~V~EG~~i~~I~~~Gn~~~~~~~L~~~~~~~~G~~~~~~~l~~~~~~I 258 (693)
.+.+.|.+.|++| .|+++.|.|.-. +...+.++...-.|.+|+.+.+.+....+
T Consensus 257 ~G~v~i~l~v~~g-~I~~~~i~gDf~-~~~~~~~l~~~L~G~~~~~~~i~~~l~~~ 310 (324)
T TIGR00545 257 AGGFELHVQVEKG-KIVDCKFFGDFL-SVADITPVTNRLIGQKYDYDTFAKELENL 310 (324)
T ss_pred CCcEEEEEEEeCC-EEEEEEEECCCC-CcccHHHHHHHhCCCccCHHHHHHHHHhh
Confidence 4678999999888 588999998743 33445555455579999999998887765
No 41
>PRK03822 lplA lipoate-protein ligase A; Provisional
Probab=23.57 E-value=2e+02 Score=30.89 Aligned_cols=55 Identities=16% Similarity=0.117 Sum_probs=41.5
Q ss_pred CCcEEEEEEEeeCCceEEEEEEcCcCCChhHHHHhhccCCCCcccHHHHHHHHHHHH
Q 005510 203 RDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSIN 259 (693)
Q Consensus 203 ~~~v~l~~~V~EG~~i~~I~~~Gn~~~~~~~L~~~~~~~~G~~~~~~~l~~~~~~I~ 259 (693)
-+.+.|.+.|+.|. |++|.|.|.- +...++.++...-.|..|+.+.+.+....+.
T Consensus 262 ~G~v~i~~~v~~g~-I~~~~i~gD~-~~~~~~~~l~~~L~G~~~~~~~i~~~l~~~~ 316 (338)
T PRK03822 262 WGGVELHFDVEKGH-ITRAQIFTDS-LNPAPLEALAGRLQGCLYRADALQQECEALI 316 (338)
T ss_pred CCcEEEEEEEECCE-EEEEEEECCC-CCcccHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 46789999998887 8899999874 3344455554445799999999998877664
No 42
>TIGR03016 pepcterm_hypo_1 uncharacterized protein, PEP-CTERM system associated. Members of this protein family are found predominantly in exopolysaccharide biosynthesis operons marked by the presence of the EpsH-family putative exosortase and presence in the genome of the PEP-CTERM protein sorting signal. Members of this family may be distantly related to the EpsL family modeled in TIGR03014.
Probab=23.47 E-value=3.9e+02 Score=29.81 Aligned_cols=65 Identities=11% Similarity=0.137 Sum_probs=39.8
Q ss_pred eeEEEEEEecccccCCCCceEEEEEEEeeccCCccccCCCCCCC-ceEEeEEEEEEEEEeecCCCeEEEEEEEEEEEe
Q 005510 422 DSIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNS-SLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSG 498 (693)
Q Consensus 422 ~~~~~lsy~~P~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~l~l~~~l~~~~~~~~gl~~~~~~ 498 (693)
...+.+.+..-|.. . ++.++++.+.+.+.. .. .-..+...+++++.|.+.++..++++|+|...+
T Consensus 345 ~~~~~~~~~h~l~~--r--l~~~l~~~y~~~dy~--------~~~~r~d~~~~~~~gl~Y~~~~~~~~~l~Y~y~~~d 410 (431)
T TIGR03016 345 QTGGSVLLTHRLSP--R--LTANLGLTYERNEGS--------GTNDQETDRTSVSAGLSYQLGENTTGSLTYRYQERD 410 (431)
T ss_pred EEeeeEEEEEeccc--c--cceeEEEEEEEeecc--------CCCCcccceEEEEEEEEEEecCCcEEEEEEEEEEec
Confidence 34577777766543 3 344444444433211 11 123356778889999999999999888887764
No 43
>PF04338 DUF481: Protein of unknown function, DUF481; InterPro: IPR007433 This family includes several proteins of uncharacterised function.
Probab=23.46 E-value=6.7e+02 Score=24.10 Aligned_cols=138 Identities=10% Similarity=0.003 Sum_probs=73.6
Q ss_pred eEEeEEEEEEEEEeecCCCeEEEEEEEEEEEeeecCCCCcccccccCCceeeecccCCc-eeEEEEEEEecCCCCCCCce
Q 005510 467 LTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGNPIIKDFYSSPLTASGKTNDE-MLIAKFESVYTGSGDQGSSM 545 (693)
Q Consensus 467 ~~~~~~g~~l~l~~~l~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~rD~-~~~P~~g~~~~~~G~~g~~~ 545 (693)
-..+++.+.+.+.+.+.+.|.+.+...|++.++.... .+...+.++++..-..++ .+....| .|
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~r~~~~~G~Gy~~~~~~~~~l~~~~G-----~~------ 111 (210)
T PF04338_consen 47 TTANRYRASLRYDYFLSERWYLFGFARYERDRFQGID----YRYTLGAGLGYRLINTDRHKLSVEAG-----PG------ 111 (210)
T ss_pred EEeeEEEEEEEEEEEcCCCEEEEEEEEEEEcccCCee----EEEEEEeEeeEEEEECCCEEEEEEEC-----Cc------
Confidence 4566777888999999999999999999887664321 122333444433222222 2222211 11
Q ss_pred EEEEeeecCCcCCCcceeEEEEEEEEEeEEecCc-eEEEEEeeceeccCCCccCceecCCCCCccCCcCCCccccceEEE
Q 005510 546 FVFNMEQGLPVWPEWLFFNRVNARARKGVEIGPA-RLLLSLSGGHVVGNFSPHEAFAIGGTNSVRGYEEGAVGSGRSYVV 624 (693)
Q Consensus 546 ~~~~~~~~~~~~~~~~~f~k~~~~~~~y~~l~~~-~l~~~~~~G~~~g~lp~~e~F~lGG~~svRGy~~~~lg~G~~~~~ 624 (693)
.... +.... ..+..+..+.+...+.+.+.++ .|...+.... .... ..+..+.
T Consensus 112 ~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------------~~~~--~~~~~~~ 164 (210)
T PF04338_consen 112 YRYE-DYTDG--DDDENSPAARFGLDYRWKISDNLSLTQTLSYQP----------------------SLSD--FSDYRVN 164 (210)
T ss_pred EEEE-Eeccc--CCceeEEEEEEEEEEEEEcCCCEEEEEEEEEEE----------------------eecC--CCCeEEE
Confidence 0100 01110 1344555666666666666554 2222222210 0111 2466777
Q ss_pred EeEEEEEecCCceeEEEEEEee
Q 005510 625 GSGEISFPMLGPVEGVIFSDYG 646 (693)
Q Consensus 625 ~s~Elr~pl~~~l~~~~F~D~G 646 (693)
..+.+.++|.++|.+.+=++.-
T Consensus 165 ~~~~l~~~l~~~l~l~~~~~~~ 186 (210)
T PF04338_consen 165 SETGLKVKLTKNLSLSLSYNYD 186 (210)
T ss_pred EEEEEEEEEeccEEEEEEEEEE
Confidence 8888999998887777666654
No 44
>PF10082 DUF2320: Uncharacterized protein conserved in bacteria (DUF2320); InterPro: IPR018759 This domain has no known function.
Probab=21.89 E-value=1e+03 Score=25.58 Aligned_cols=157 Identities=13% Similarity=0.102 Sum_probs=84.4
Q ss_pred eEEEEEEEEEeecCCCeEEEEEEEEEEEeeecCCCCcccccccCCce--eeecccCCceeEEEEEEEecCCCCCCCceEE
Q 005510 470 GRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGNPIIKDFYSSPL--TASGKTNDEMLIAKFESVYTGSGDQGSSMFV 547 (693)
Q Consensus 470 ~~~g~~l~l~~~l~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~l--~~~~d~rD~~~~P~~g~~~~~~G~~g~~~~~ 547 (693)
....+.+++.+.++..+++.+.++|...++.+.. ..++.++.+ .+.|.-.... .+.
T Consensus 219 ~~~~~~~G~~~~~t~~~~g~~~~Gy~~~~~d~~~----~~d~~g~~~~~~l~w~pt~~t------------------~~~ 276 (381)
T PF10082_consen 219 TGYEVLAGVSWDLTGKTRGEAKVGYQRRDFDDPS----RRDFSGPSWDASLTWSPTPKT------------------TVT 276 (381)
T ss_pred CceEEEEEEEEcccCcEEEEEEEEEEEeeccCCC----ccCCCceEEEEEEEEeccCce------------------EEE
Confidence 3445667778888999999999999988775431 123333333 3333311111 022
Q ss_pred EEeeecC--CcCCCcceeEEEEEEEEEeEEecCceEEEEEeeceeccCCCccCceecCCCCCccCCcCCCccccceEEEE
Q 005510 548 FNMEQGL--PVWPEWLFFNRVNARARKGVEIGPARLLLSLSGGHVVGNFSPHEAFAIGGTNSVRGYEEGAVGSGRSYVVG 625 (693)
Q Consensus 548 ~~~~~~~--~~~~~~~~f~k~~~~~~~y~~l~~~~l~~~~~~G~~~g~lp~~e~F~lGG~~svRGy~~~~lg~G~~~~~~ 625 (693)
+.+.... ........+....+.+.+-+.+.++ +.+.+.+++...+. .|.. .-|..+.+
T Consensus 277 l~~~r~~~~~~~~~~~~~~~~~~~~~~~h~~~~~-l~~~~~~~~~~~~y-------~~~~------------r~D~~~~~ 336 (381)
T PF10082_consen 277 LSASRSIEESTDAGGSYVRTTSVSLGWTHQLTPR-LSLSLSAGYENRDY-------QGSD------------REDDTYSA 336 (381)
T ss_pred EEEEEEEcCcccCCCcEEEEEEEEEEEEEEeeee-EEEEEEEEEEEeEc-------CCCC------------ceeeEEEE
Confidence 2222211 1001112233445555666666553 66666666654332 1111 24677799
Q ss_pred eEEEEEecCCceeEEEEEEeeecCCCCCCCCCCCCCcCccceeEEEE
Q 005510 626 SGEISFPMLGPVEGVIFSDYGTDLGSGPSVPGGFLYDWPHVSYAFKV 672 (693)
Q Consensus 626 s~Elr~pl~~~l~~~~F~D~G~v~~~~~~~~~~~~~~~~s~G~Glr~ 672 (693)
++.+.|.+...+.+.+.+.+-.--.+ .... .-....+++|+++
T Consensus 337 ~~~~~y~~~r~~~~~~~y~~~~~~S~---~~~~-~y~~n~v~l~l~~ 379 (381)
T PF10082_consen 337 GLGLTYRLNRWLSLSAGYRYEDRDSN---IPSY-DYDRNRVGLGLTY 379 (381)
T ss_pred EEEEEEEecCCEEEEEEEEEEEeeCC---CCCC-ceEeEEEEEEEEE
Confidence 99999999998888887766543222 1111 1124556666665
No 45
>PF13505 OMP_b-brl: Outer membrane protein beta-barrel domain; PDB: 3DZM_A 2LHF_A 1Q9F_A 1ORM_A 1Q9G_A 1QJ9_A 1QJ8_A 3QRA_A 3QRC_B.
Probab=21.15 E-value=1.5e+02 Score=27.01 Aligned_cols=66 Identities=8% Similarity=-0.093 Sum_probs=35.1
Q ss_pred EEEEeEEEEEecCCceeEEEEEEeeecCCCCCC--C--CCCCCCcCccceeEEEEEecCCCCcccceeecccc
Q 005510 622 YVVGSGEISFPMLGPVEGVIFSDYGTDLGSGPS--V--PGGFLYDWPHVSYAFKVCSLPPPPRLQPYFVYLFC 690 (693)
Q Consensus 622 ~~~~s~Elr~pl~~~l~~~~F~D~G~v~~~~~~--~--~~~~~~~~~s~G~Glr~~tpiGPi~~dir~dy~~~ 690 (693)
.+.+.+.+++++.+.+.+.+.+-+|....+... . ......+...+|+|++| .+.+ .+.++++|.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~y~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~y--~~~~-~~~l~~~y~~~ 154 (176)
T PF13505_consen 85 SIGLNAGYNFPLSDKFSPYVGAGYGYYYYEIDIDDFSSSDSDSGFGFGLGAGVEY--NISD-NFSLNAEYRYT 154 (176)
T ss_dssp EEEEEEEEEEEESSSEEEEEEEEEEEEEEEECSTSE--EEEEEEEEEEEEEEEEE--ESST-TEEEEEEEEEE
T ss_pred eeeeeEEEEeccCCcEEEEEEEeeEEEEEEEeeccceeccCCCceEEEEEEEEEE--EECC-CEEEEEEEEEE
Confidence 466677777887777777776666654332211 0 00001123444555555 4443 56677777664
No 46
>PF13505 OMP_b-brl: Outer membrane protein beta-barrel domain; PDB: 3DZM_A 2LHF_A 1Q9F_A 1ORM_A 1Q9G_A 1QJ9_A 1QJ8_A 3QRA_A 3QRC_B.
Probab=21.13 E-value=6.1e+02 Score=22.80 Aligned_cols=30 Identities=10% Similarity=-0.030 Sum_probs=22.6
Q ss_pred EEeEEEEEEEEEeecCCCeEEEEEEEEEEE
Q 005510 468 TIGRVTAGMEFSRPIRPKWSGTVGLIFQHS 497 (693)
Q Consensus 468 ~~~~~g~~l~l~~~l~~~~~~~~gl~~~~~ 497 (693)
+...+.+++++.++++++|.+.+++++...
T Consensus 127 ~~~~~~~g~G~~y~~~~~~~l~~~y~~~~~ 156 (176)
T PF13505_consen 127 SGFGFGLGAGVEYNISDNFSLNAEYRYTFY 156 (176)
T ss_dssp EEEEEEEEEEEEEESSTTEEEEEEEEEEEE
T ss_pred CceEEEEEEEEEEEECCCEEEEEEEEEEEE
Confidence 344556777888999999999888877544
No 47
>PF03349 Toluene_X: Outer membrane protein transport protein (OMPP1/FadL/TodX); InterPro: IPR005017 This family includes TodX from Pseudomonas putida (strain F1/ATCC 700007) Q51971 from SWISSPROT and TbuX from Burkholderia pickettii (Ralstonia pickettii) (Pseudomonas pickettii) PKO1 Q9RBW8 from SWISSPROT. These are membrane proteins of uncertain function that are involved in toluene catabolism. Related proteins involved in the degradation of similar aromatic hydrocarbons are also in this family, such as CymD O33458 from SWISSPROT.; PDB: 2R88_A 1T16_B 2R4N_B 2R4P_B 3PGU_A 2R4L_A 3DWN_B 2R4O_A 3PF1_B 3PGS_A ....
Probab=20.29 E-value=1.1e+03 Score=25.56 Aligned_cols=30 Identities=7% Similarity=-0.106 Sum_probs=24.3
Q ss_pred EeEEEEEEEEEeecCCCeEEEEEEEEEEEe
Q 005510 469 IGRVTAGMEFSRPIRPKWSGTVGLIFQHSG 498 (693)
Q Consensus 469 ~~~~g~~l~l~~~l~~~~~~~~gl~~~~~~ 498 (693)
..++.++++++|++.+++++.+++.|...+
T Consensus 366 ~~~~~~s~G~~y~~~~~~~~d~a~~~~~~~ 395 (427)
T PF03349_consen 366 TDRHWLSAGAGYRFSKNLSLDFAYQYIFYN 395 (427)
T ss_dssp SSEEEEEEEEEEESSSSEEEEEEEEEEEEE
T ss_pred CCcEEEEEeeEEEcCCCeEEEEEEEEEEcc
Confidence 456778889999999999999888876653
Done!