Query 005510
Match_columns 693
No_of_seqs 242 out of 2275
Neff 7.9
Searched_HMMs 29240
Date Tue Mar 26 18:09:27 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005510.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2018-2022//hhsearch_pdb/005510hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qdz_A TPSB transporter FHAC; 1.0 1 1 394.2 44.8 446 211-691 49-532 (554)
2 3mc9_A ALR2269 protein; polype 1.0 1 1 243.7 17.5 236 130-373 55-309 (316)
3 3efc_A OMP85, outer membrane p 1.0 1 1 218.4 21.2 235 128-375 66-331 (395)
4 2x8x_X TLR1789 protein, OMP85; 1.0 1 1 216.8 24.1 231 134-373 2-235 (235)
5 3efc_A OMP85, outer membrane p 1.0 1 1 216.7 11.8 222 134-376 4-251 (395)
6 2qdf_A OMP85, outer membrane p 1.0 1 1 215.9 24.3 236 128-376 67-333 (335)
7 2qdf_A OMP85, outer membrane p 1.0 1 1 175.9 24.8 220 135-375 6-251 (335)
8 3q6b_A Outer membrane protein 1.0 1 1 157.9 16.6 152 210-370 27-189 (189)
9 3q6b_A Outer membrane protein 1.0 1 1 106.9 18.5 148 130-288 28-189 (189)
10 2qdz_A TPSB transporter FHAC; 1.0 1 1 100.4 23.9 263 131-452 50-337 (554)
No 1
>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} PDB: 3njt_A
Probab=1.00 E-value=1 Score=394.24 Aligned_cols=446 Identities=13% Similarity=0.062 Sum_probs=338.9
Q ss_pred EEEE---CCCEE--EEEEECCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCC-EEEEEE-EEEEECCEEE
Q ss_conf 9922---88269--999970767895689876135999700688899999999999996995-268641-8983084799
Q 005510 211 QVEP---NQEFH--GLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGL-FGMVSG-VEILSGGIIR 283 (693)
Q Consensus 211 ~V~E---G~~i~--~I~i~G~~~~~~~~L~~~l~~~~G~~~~~~~l~~~~~~I~~~Y~~~GY-~a~V~~-~~~~~~g~l~ 283 (693)
..+| |++++ +|.|+|++.+++++|++.+..+.|++++...+++++++|.++|.++|| +++|.. .+...++.|+
T Consensus 49 ~~~e~~~g~~~~i~~I~~~G~~~~~~~~l~~~~~~~~G~~~~~~~l~~~~~~i~~~y~~~GY~~a~v~~~~~~~~~g~l~ 128 (554)
T 2qdz_A 49 RKPDATSGHTVTVHAVDLDFGVEGRLFDPAPLVQDYLNRPLDNEQLFLLVKALSAALYDRGYATSIVTFVPPGVVDGVLK 128 (554)
T ss_dssp ----CBCCCSSSSCCEEEECCSSSCCCSCSTTSTTSSSSCBCSTTHHHHHHHHHHHHHHTTCTTCEEEEEEEEEETTEEE
T ss_pred CCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEE
T ss_conf 87211588619999999978863899999987576438877999999999999999997695522588166335688899
Q ss_pred EEEEEEEEEEEEEEECCCCCCCCCCCCCCHHHHHH---HCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCC
Q ss_conf 99977899769999723667988768999788996---604378984226769999999982999622066430599999
Q 005510 284 LQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILR---QLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTG 360 (693)
Q Consensus 284 i~I~eg~I~~I~i~~~~~~~Gn~~~~~t~~~~I~r---~l~l~~G~~~n~~~l~~~~~~L~~lg~F~~V~i~~~~~~~~~ 360 (693)
+.|.||+|++|.|. |+ .++++.+|++ ++++++|++||..+|++++++|++++ .+|.+.+.|+.+++
T Consensus 129 i~v~eG~i~~I~i~------G~---~~~~~~~l~~~~~~~~~~~G~~~n~~~le~~~~~L~~~~--~~v~~~~~p~~~~g 197 (554)
T 2qdz_A 129 LKVEWGRIKGWLID------GK---PLEGTRDRMMVFSAMPGWQDKVLNVFDIDQAIYNINNGG--KTGNITIVPADEYG 197 (554)
T ss_dssp EEEECCEEEEEEET------TE---ECCSHHHHHHHHHHSTTCTTCBCCHHHHHHHHHHHCSSS--EEEEEEEEECSSTT
T ss_pred EEEEEEEEEEEEEC------CC---CCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCC--HHCEEEEECCCCCC
T ss_conf 99986898899988------98---765536663133314456899677899999999975381--32169990278799
Q ss_pred EEEEEEEEEECCCCEEEEEEEEEC--CCCCCCCCCEEEEEEEEECCCCCCCEEEEEEEEECC-------EEEEEEEEEEC
Q ss_conf 599999999757704999675624--767888753089999963356768708999999603-------22599999961
Q 005510 361 KVDLIMNVVERPSGGFSAGGGISS--GITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQ-------IDSIFRINYTD 431 (693)
Q Consensus 361 ~v~i~i~V~E~~~~~l~~g~gyss--~~~~g~~~g~~~~~~~~~~NlfG~G~~l~~~~~~s~-------~~~~~~l~y~~ 431 (693)
.++|+++|+|++++.+.++++... ..+ ..++++.+.+.++|++|.|+.+++.+..+. ..+.+.++|+.
T Consensus 198 ~~~l~v~v~e~~~~~~~~g~~~~g~g~~~---tg~~~~~~~~~~~n~~g~gd~l~~~~~~~~~~~~~~~~~~~~~~~y~~ 274 (554)
T 2qdz_A 198 YSYLDLQLQRRALPRVSLGMDNSGPGTPE---NGRYKYNASVTANDLLGLNDTLGLYIGNRYYRDAGHDAERNYDLMYSV 274 (554)
T ss_dssp EEEEEEEEEECCSCEEEEEEEECSCSSSC---SSCEEEEEEEEEECSSSSSCEEEEEEEEECCSCCSSCEEEEEEEEEEE
T ss_pred EEEEEEEEEECCCEEEEEEECCCCCCCCC---CCCEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEE
T ss_conf 16999998667938999998578988877---043478999982798898868999998457556678881489999999
Q ss_pred CCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEC--CCCEEEEEEEEEEEEEEECC-CCCC--
Q ss_conf 522489983079999985216776446788999861796887899998566--99749899999999864349-9982--
Q 005510 432 PWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPI--RPKWSGTVGLIFQHSGARDE-KGNP-- 506 (693)
Q Consensus 432 P~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~--~~~~~~~~g~~~~~~~~~~~-~~~~-- 506 (693)
||.. +++.+++.+++++..+ .+. .....|...+.++++.+++|+ ...+++++++.+.+.+..+. .+..
T Consensus 275 P~~~-----~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (554)
T 2qdz_A 275 PLGR-----TRLDLQTGYSTYRNLL-KTR-YGQYQSAGNSRSFGLKATRLLYRDTRSQFSVYGGLKLRQNKNYLAGTRLD 347 (554)
T ss_dssp EETT-----EEEEEEEEEEEEECCC-SSS-SCCCCCEEEEEEEEEEEEEEEECCSSEEEEEEEEEEEEEEEEECCTTSCC
T ss_pred EEEC-----CEEEEEEEEEEEEEEC-CCC-CCEEEEEEEEEEEEEEEEEEEEECCCEEEEEEEEEEEEEEEEEECCCCCC
T ss_conf 8815-----7079999996788781-688-62699985689999999978997887279999999999854240783721
Q ss_pred -CCCCCCCCCEEEECCCCCC--EEEEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEEEEEEEEEE---CC-C
Q ss_conf -1123347855652125884--048887778617999897407997530577677751259999998886896---58-2
Q 005510 507 -IIKDFYSSPLTASGKTNDE--MLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGVEI---GP-A 579 (693)
Q Consensus 507 -~~~~~~~~~l~~s~d~rD~--~~~P~~g~~~~~~G~~g~~~~~~~~~~~~~~~~~~~~f~k~~~~~~~y~~l---~~-~ 579 (693)
.........+++++|+++. .+.++.+... |.. +............++..|.|+.+++++++++ .. .
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---G~~----~~a~~~~~~~~~~~~~~f~k~~~~~~~~~~~~~~~~~~ 420 (554)
T 2qdz_A 348 VSSKHYSDVTVGMQYSTQRGANAYFGDLSFTR---GVG----VNNGKYAAYDERGPQGNVSRFNGSLAWTRYMALAGQPI 420 (554)
T ss_dssp CEEEEEEEEEEEEEEEEECSSEEEEEEEEEEE---CCC----C--------------CCCEEEEEEEEEEEEEEETTEEE
T ss_pred CCCCEEEEEEEEEEEEEEECCEEEEEEEEEEE---CCC----CCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCE
T ss_conf 35765999999999999806849999999982---578----88876831136888640799999999999920368888
Q ss_pred EEEEEEEECEECCCCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEC-----C--CCEEEEEEEEEEECCCCC
Q ss_conf 299997410001689946713229999866886898664506899859999854-----7--763599999842128999
Q 005510 580 RLLLSLSGGHVVGNFSPHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGEISFPM-----L--GPVEGVIFSDYGTDLGSG 652 (693)
Q Consensus 580 ~l~~~~~~G~~~g~lP~~e~F~lGG~~svRGy~~~~ig~G~~~~~~s~Elr~pl-----~--~~l~~~~F~D~G~v~~~~ 652 (693)
.+.+++.+|+..+++|.+|+|++||.++||||++++++||+.++++++|||+|+ . ..+++++|+|+|++|+..
T Consensus 421 ~~~~~~~~q~~~~~lp~~e~f~lGG~~sVRGy~~~~l~pGd~g~~~~~El~~~~~~~~~~~~~~~~~~~F~D~G~v~~~~ 500 (554)
T 2qdz_A 421 QWASQLGFQYSRQQLLNSYQITVGDEYTVRGYNLRTSQSGDSGVYLSNTLTVPVQFSLLGKQASVAPFVGADVGALKSNH 500 (554)
T ss_dssp EEEEEEEEEECSSCSSSSEECCSCCCCCCTTCCCCCSCCSSCSSCCEESEEEEEEEEEEECCSSCEEEEEEEEEEEECSS
T ss_pred EEEEEEEEEECCCCCCCHHHEECCCCCEECCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCEEEEEEEEEEEEEECCC
T ss_conf 99999895766999995885711797738874666445777557999999812245655765168899999889982588
Q ss_pred CCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEECCCCC
Q ss_conf 998999887573120477997169997345301000232
Q 005510 653 PSVPGGFLYDWPHVSYAFKVCSLPPPPRLQPYFVYLFCF 691 (693)
Q Consensus 653 ~~~~~~~~~~~~s~G~Glr~~tpiGPi~ldirfdy~~~~ 691 (693)
.+. ...++.|+|+|+||.+|++| +++|||+++
T Consensus 501 ~~~---~~~~~~g~G~Glr~~~~~~~----l~l~~a~pl 532 (554)
T 2qdz_A 501 PDA---RTIRMAGLAAGVRFDLPYAR----MSFTYSKPV 532 (554)
T ss_dssp SSC---CEEEEEEEEEEEEECCSSEE----EEEEEEEEC
T ss_pred CCC---CCCEEEEEEEEEEEECCCEE----EEEEEEEEC
T ss_conf 888---89889999999999648489----999998263
No 2
>3mc9_A ALR2269 protein; polypeptide transport associated, potra, outer bacterial MEM protein membrane transport, beta barrel biogenesis, membran; 2.20A {Nostoc SP} PDB: 3mc8_A
Probab=1.00 E-value=1 Score=243.69 Aligned_cols=236 Identities=33% Similarity=0.583 Sum_probs=202.1
Q ss_pred CCCCCCCCEEEEEEEEECCC----CCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEE-ECCC
Q ss_conf 35864552499999992789----866844389999998530689985279999999999997483451757887-3699
Q 005510 130 SRSDEERVLISEVLVRNKDG----EELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAV-DTRD 204 (693)
Q Consensus 130 ~i~~~e~~~I~~I~i~G~~n----~~i~~~~l~~~i~~~l~~~~~g~~~~~~~i~~d~~~L~~~GYf~a~v~~~~-~~~~ 204 (693)
...+|++++|++|.|+| | ..++++.|++ .+ .+++|+.|+.+.+++++++|++.|||. .|.+.. +..+
T Consensus 55 ~~~Eg~~~~I~~I~i~G--n~~~~~~~~~~~l~~----~l-~~k~G~~~~~~~l~~di~~L~~~GyF~-~V~v~~~~~~~ 126 (316)
T 3mc9_A 55 PETTEPRVLVSEVLVRP--QSGQLTPELETQVYN----VI-RTQPGRTTTRSQLQEDINAIFGTGFFS-NVQASPEDTPL 126 (316)
T ss_dssp ---CCCCEEEEEEEEEE--SSSCCCHHHHHHHHH----HC-CCCTTSEECHHHHHHHHHHHHHTSCEE-EEEEEEEEETT
T ss_pred CCCCCCCEEEEEEEEEC--CCCCCCCCCHHHHHH----HC-CCCCCCCCCHHHHHHHHHHHHHCCCCE-EEEEEEECCCC
T ss_conf 87779844899999977--866234568999996----50-579998359999999999999779961-78998744898
Q ss_pred CEEEEEEEEECCCEEEEEEECC------CCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCC-EEEEEE-EEE
Q ss_conf 3899999922882699999707------67895689876135999700688899999999999996995-268641-898
Q 005510 205 GIRLVFQVEPNQEFHGLVCEGA------NVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGL-FGMVSG-VEI 276 (693)
Q Consensus 205 ~v~i~i~V~EG~~i~~I~i~G~------~~~~~~~L~~~l~~~~G~~~~~~~l~~~~~~I~~~Y~~~GY-~a~V~~-~~~ 276 (693)
++.|+|.|+|||.+++|.|.|+ +.++.+.|++.+.++.|++|+...+.+++++|.++|+++|| +|+|.. .+.
T Consensus 127 ~v~l~~~V~egp~I~~I~~~Gn~~~~~~~~~~~~~L~~~l~l~~G~~~n~~~l~~~~~~I~~~y~~~GY~~A~V~~~~~~ 206 (316)
T 3mc9_A 127 GVRVSFIVQPNPVLSKVEIQANPGTNVPSVLPQATADEIFRAQYGKILNLRDLQEGIKELTKRYQDQGYVLANVVGAPQV 206 (316)
T ss_dssp EEEEEEEEEECCBCCEEEEECCC----CCSSCTTHHHHHHGGGTTSBCCHHHHHHHHHHHHHHHHHTTCTTCEECSSCEE
T ss_pred EEEEEEEEECCCEEEEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHHHCCCEEEEEEECCEE
T ss_conf 08999998437517789996465655556279999999854367974279999999999999999789705896305688
Q ss_pred EECCEEEEEEEEEEEEEEEEEECCCC------CCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 30847999997789976999972366------798876899978899660437898422676999999998299962206
Q 005510 277 LSGGIIRLQVAEAEVNNISIRFLDRK------TGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVS 350 (693)
Q Consensus 277 ~~~g~l~i~I~eg~I~~I~i~~~~~~------~Gn~~~~~t~~~~I~r~l~l~~G~~~n~~~l~~~~~~L~~lg~F~~V~ 350 (693)
..++.|+|.|.||+|++|.|...+.+ +|++...++++.+|+|++++++|++||..++++++++|+++|+|++|.
T Consensus 207 ~~~g~l~i~V~eG~i~~i~v~~i~~~Gn~~~~~Gn~i~~~t~~~vI~r~l~~~~G~~yn~~~l~~~~~~L~~lg~F~~V~ 286 (316)
T 3mc9_A 207 SENGVVTLQVAEGVVENISVRFRNKEGQDVNEQGQPIRGRTQDYIITREVELKPGQVFNRNTVQKDLQRVFGTGLFEDVN 286 (316)
T ss_dssp CTTSEEEEEEECCEEC----------------------------------------------------------------
T ss_pred CCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCEEE
T ss_conf 89997999997276553899997414653245786144534789997441258999679999999999998079962246
Q ss_pred EEEECCCCCCEEEEEEEEEECCC
Q ss_conf 64305999995999999997577
Q 005510 351 IIPQPAGDTGKVDLIMNVVERPS 373 (693)
Q Consensus 351 i~~~~~~~~~~v~i~i~V~E~~~ 373 (693)
+.+.++..++.++|.++|+|+..
T Consensus 287 v~~~p~~~~~~vdl~v~v~e~~~ 309 (316)
T 3mc9_A 287 VSLDPGTDPTKVNVVVNVVERSL 309 (316)
T ss_dssp -----------------------
T ss_pred EEEECCCCCCEEEEEEEEEECCC
T ss_conf 78503799996899999998102
No 3
>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane, ME protein; 3.30A {Escherichia coli}
Probab=1.00 E-value=1 Score=218.44 Aligned_cols=235 Identities=13% Similarity=0.209 Sum_probs=199.6
Q ss_pred CCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH----HHCCCCCEEEEEEEE--
Q ss_conf 21358645524999999927898668443899999985306899852799999999999----974834517578873--
Q 005510 128 SVSRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRI----IDSGYFCSCMPVAVD-- 201 (693)
Q Consensus 128 ~~~i~~~e~~~I~~I~i~G~~n~~i~~~~l~~~i~~~l~~~~~g~~~~~~~i~~d~~~L----~~~GYf~a~v~~~~~-- 201 (693)
.+.+++.|+|.|++|.|+| |+.++.++|++.+. .+ ++++|+.|++..+++++++| .++|||+|.|...+.
T Consensus 66 ~l~~~v~e~p~I~~I~~~G--n~~~~~~~l~~~l~-~~-~~~~g~~~~~~~~~~~~~~l~~~y~~~Gy~~a~V~~~~~~~ 141 (395)
T 3efc_A 66 TLLVQVKERPTIASITFSG--NKSVKDDMLKQNLE-AS-GVRVGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVTPL 141 (395)
T ss_dssp EEEEEEEECCEEEEEEEES--CTTSCHHHHHHHHH-HH-TCCSSSCCCGGGHHHHHHHHHHHHHTTTCCSCEEEEECCBC
T ss_pred EEEEEEEECCEEEEEEEEC--CCCCCHHHHHHHHH-HC-CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC
T ss_conf 9999998736999999999--85489999999888-61-87778723999999999999999997196430998999988
Q ss_pred CCCCEEEEEEEEECCCE--EEEEEECCCCCCHHHHHHHHCCCCC---------CCCCHHHHHHHHHHHHHHHHHCCC-EE
Q ss_conf 69938999999228826--9999970767895689876135999---------700688899999999999996995-26
Q 005510 202 TRDGIRLVFQVEPNQEF--HGLVCEGANVLPTKFVEDAFRDGYG---------KVVNIRRLDEVITSINGWYMERGL-FG 269 (693)
Q Consensus 202 ~~~~v~i~i~V~EG~~i--~~I~i~G~~~~~~~~L~~~l~~~~G---------~~~~~~~l~~~~~~I~~~Y~~~GY-~a 269 (693)
.++++.|+|.|+||+++ ++|.|+||+.+++++|++.+.+++| ++|+...+++++++|.++|+++|| .+
T Consensus 142 ~~~~v~l~~~V~eG~~~~I~~I~~~Gn~~~~~~~L~~~~~~~~g~~~~~~~~~~~~~~~~l~~d~~~l~~~y~~~GY~~a 221 (395)
T 3efc_A 142 PRNRVDLKLVFQEGVSAEIQQINIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARF 221 (395)
T ss_dssp TTSEEEEEEEEECCCCCCCCCCEEESCCSSCTTTTGGGCCCCSSCCSCCSCTTTHHHHHHHHHHHHHHHHHHHHTTCTTC
T ss_pred CCCEEEEEEEEECCCEEEEEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 99979999999338808999999989821699999999707777660110368841899998689999999986799669
Q ss_pred EEEEEE--EEEC--C-EEEEEEEEE---EEEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHH---
Q ss_conf 864189--8308--4-799999778---9976999972366798876899978899660437898422676999999---
Q 005510 270 MVSGVE--ILSG--G-IIRLQVAEA---EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVE--- 338 (693)
Q Consensus 270 ~V~~~~--~~~~--g-~l~i~I~eg---~I~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l~l~~G~~~n~~~l~~~~~--- 338 (693)
+|.+.. ...+ . .|++.|.|| +|++|.|. |+ ..+++..+++.+.+++|++|+..+++++.+
T Consensus 222 ~v~~~~~~~~~~~~~v~v~i~V~eG~~y~i~~I~i~------Gn---~~~~~~~l~~~~~l~~G~~y~~~~l~~~~~~l~ 292 (395)
T 3efc_A 222 NIDSTQVSLTPDKKGIYVTVNITEGDQYKLSGVEVS------GN---LAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIK 292 (395)
T ss_dssp EEEECCCEECTTSCSEECEEEEECCCCCEEEEECCB------SC---CTTCHHHHHHTCCCCSSCBCCHHHHHHHHHHHH
T ss_pred EEECCEEEECCCCCEEEEEEEEECCCCEEEEEEEEE------CC---CCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 970568998799968999999814898899879998------77---878889999875437999769999999999999
Q ss_pred -HHHHCCCC-CCCEEEEECCCCCCEEEEEEEEEECCCCE
Q ss_conf -99829996-22066430599999599999999757704
Q 005510 339 -TVLTMGIM-EDVSIIPQPAGDTGKVDLIMNVVERPSGG 375 (693)
Q Consensus 339 -~L~~lg~F-~~V~i~~~~~~~~~~v~i~i~V~E~~~~~ 375 (693)
.+.+.||+ ..|.+.+....+++.+++.+.|.|+++..
T Consensus 293 ~~~~~~GY~~~~v~~~~~~~~~~~~v~l~~~v~eG~~~~ 331 (395)
T 3efc_A 293 KLLGRYGYAYPRVQSMPEINDADKTVKLRVNVDAGNRFY 331 (395)
T ss_dssp HHHHHTTCSSCEEEEEEEEETTTTEEEEEEEEECCCCCC
T ss_pred HHHHHCCCCCCEEEEEEEECCCCCEEEEEEEEEECCEEE
T ss_conf 999867998407877557658999899999999677699
No 4
>2x8x_X TLR1789 protein, OMP85; chaperone, TOC75, protein targeting; 1.97A {Thermosynechococcus elongatus}
Probab=1.00 E-value=1 Score=216.77 Aligned_cols=231 Identities=32% Similarity=0.530 Sum_probs=193.4
Q ss_pred CCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCC-CEEEEEEEECCCCEEEEEEE
Q ss_conf 45524999999927898668443899999985306899852799999999999974834-51757887369938999999
Q 005510 134 EERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYF-CSCMPVAVDTRDGIRLVFQV 212 (693)
Q Consensus 134 ~e~~~I~~I~i~G~~n~~i~~~~l~~~i~~~l~~~~~g~~~~~~~i~~d~~~L~~~GYf-~a~v~~~~~~~~~v~i~i~V 212 (693)
++++.|++|.|+| |+.+..+.++ ..+ .+++|+.|++..+++|+++|++.||| ++.+.... ..+++.|+|.|
T Consensus 2 ~~~~~I~~I~i~G--~~~~~~~~i~----~~l-~~~~g~~~~~~~~~~~~~~L~~~Gyf~~~~v~~~~-~~~~~~l~~~v 73 (235)
T 2x8x_X 2 EPKVLIAEVVVEG--ATPELEQLVY----QVI-STRPGSTTTRTQLQQDTNAIFATGFFADVNAVPRD-TPLGVRITFVV 73 (235)
T ss_dssp CCCEEEEEEEEES--CCHHHHHHHH----HHC-CCCTTCEECHHHHHHHHHHHHTTSCEEEEEEEEEE-ETTEEEEEEEE
T ss_pred CCCCEEEEEEEEC--CCCCCHHHHH----HHH-CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEC-CCCCEEEEEEE
T ss_conf 9850899999989--8756889999----750-56778734899999999999988981799998740-89968999999
Q ss_pred EECCCEEEEEEECCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCC-EEEEEEE-EEEECCEEEEEEEEEE
Q ss_conf 2288269999970767895689876135999700688899999999999996995-2686418-9830847999997789
Q 005510 213 EPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGL-FGMVSGV-EILSGGIIRLQVAEAE 290 (693)
Q Consensus 213 ~EG~~i~~I~i~G~~~~~~~~L~~~l~~~~G~~~~~~~l~~~~~~I~~~Y~~~GY-~a~V~~~-~~~~~g~l~i~I~eg~ 290 (693)
+|||.+.+|.|.|+..++.+.|.+.+.++.|++|+...+.+++++|.++|+++|| +|+|... +...++.|++.|.||.
T Consensus 74 ~eg~~i~~i~~~G~~~~~~~~l~~~~~~~~G~~~~~~~l~~~~~~i~~~y~~~GY~~a~v~~~~~~~~~~~l~~~v~eG~ 153 (235)
T 2x8x_X 74 RPYPVLRAVQVAGNQVLTQEKVNEIFAPQIGRTLNLRELQAGIEKINTFYRDNGYILGQVVGTPQVDPDGVVTLQVAEGV 153 (235)
T ss_dssp EECCBCCEEEEESCSSSCHHHHHHHHGGGTTSBCCHHHHHHHHHHHHHHHHHTTCTTCEEEEEEEECTTSEEEEEEECCB
T ss_pred EECCEEEEEEEECCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCEEEEEEEECC
T ss_conf 81416879999898627999999874735797828999999999999999967970689986032289967999998073
Q ss_pred EEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEEEEEEE
Q ss_conf 97699997236679887689997889966043789842267699999999829996220664305999995999999997
Q 005510 291 VNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVE 370 (693)
Q Consensus 291 I~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l~l~~G~~~n~~~l~~~~~~L~~lg~F~~V~i~~~~~~~~~~v~i~i~V~E 370 (693)
+..|.+.... -.|+....++++.+|++.+.+++|++|+..++++++++|.++|+|+.|.+.+.++.+++.+++.+.|+|
T Consensus 154 ~~~i~i~~i~-~~G~~~~~~~~~~~i~~~~~~~~G~~~~~~~l~~~~~~L~~~g~f~~v~i~~~~~~~~~~~~l~i~v~e 232 (235)
T 2x8x_X 154 VEQVTYRFLN-KEGEPTKQRTRDFVISREMDTQPGVVLNQKTVQADLRRLFELGLFEDVQVALEPGQNPRRVNLILNIKE 232 (235)
T ss_dssp EEEEEEEEBC-TTSCBCCCCSCHHHHHTTCSCCTTSBCCHHHHHHHHHHHHHHTCEEEEEEEEEECSSTTSEEEEEEEEE
T ss_pred EEEEEEEEEC-CCCCCCCCCCCHHHEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEEEEEEEE
T ss_conf 6899999851-469848886614655336303899824899999999999826996534377446899980699999995
Q ss_pred CCC
Q ss_conf 577
Q 005510 371 RPS 373 (693)
Q Consensus 371 ~~~ 373 (693)
+++
T Consensus 233 ~~t 235 (235)
T 2x8x_X 233 RNT 235 (235)
T ss_dssp CCC
T ss_pred CCC
T ss_conf 899
No 5
>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane, ME protein; 3.30A {Escherichia coli}
Probab=1.00 E-value=1 Score=216.65 Aligned_cols=222 Identities=14% Similarity=0.265 Sum_probs=174.2
Q ss_pred CCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEEEEEE
Q ss_conf 45524999999927898668443899999985306899852799999999999974834517578873699389999992
Q 005510 134 EERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVE 213 (693)
Q Consensus 134 ~e~~~I~~I~i~G~~n~~i~~~~l~~~i~~~l~~~~~g~~~~~~~i~~d~~~L~~~GYf~a~v~~~~~~~~~v~i~i~V~ 213 (693)
.+.+.|++|.|+| |+.++.+.++. .+ .+++|+.+++..+.+++++|++.|||+.+-. .. ++..|+|.|+
T Consensus 4 ~~~~~i~~I~v~G--~~~~~~~~i~~----~~-~~~~G~~~~~~~i~~~i~~l~~~g~F~dv~v-~~---~g~~l~~~v~ 72 (395)
T 3efc_A 4 AEGFVVKDIHFEG--LQRVAVGAALL----SM-PVRTGDTVNDEDISNTIRALFATGNFEDVRV-LR---DGDTLLVQVK 72 (395)
T ss_dssp --CCCEEEEECSC--CSSSCHHHHHH----TC-SCCTTSCCCTHHHHHHHHHHHHHCCEEEEEE-EC---CSSEEEEEEE
T ss_pred CCCCEEEEEEEEC--CCCCCHHHHHH----HC-CCCCCCEECHHHHHHHHHHHHHCCCCCEEEE-EE---ECCEEEEEEE
T ss_conf 6672687899999--82379899997----55-8888962188999999999997399627999-97---0999999998
Q ss_pred ECCCEEEEEEECCCCCCHHHHHHHH---CCCCCCCCCHHHHHHHHHHHHHHHHHCCCE-EEEEEEEE-EECC--EEEEEE
Q ss_conf 2882699999707678956898761---359997006888999999999999969952-68641898-3084--799999
Q 005510 214 PNQEFHGLVCEGANVLPTKFVEDAF---RDGYGKVVNIRRLDEVITSINGWYMERGLF-GMVSGVEI-LSGG--IIRLQV 286 (693)
Q Consensus 214 EG~~i~~I~i~G~~~~~~~~L~~~l---~~~~G~~~~~~~l~~~~~~I~~~Y~~~GY~-a~V~~~~~-~~~g--~l~i~I 286 (693)
|+|.+.+|.|+||+.++.++|++.+ .+++|++|+...++++.++|.++|+++||+ |.|..... .+++ .|.+.|
T Consensus 73 e~p~I~~I~~~Gn~~~~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~y~~~Gy~~a~V~~~~~~~~~~~v~l~~~V 152 (395)
T 3efc_A 73 ERPTIASITFSGNKSVKDDMLKQNLEASGVRVGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVTPLPRNRVDLKLVF 152 (395)
T ss_dssp ECCEEEEEEEESCTTSCHHHHHHHHHHHTCCSSSCCCGGGHHHHHHHHHHHHHTTTCCSCEEEEECCBCTTSEEEEEEEE
T ss_pred ECCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEEE
T ss_conf 73699999999985489999999888618777872399999999999999999719643099899998899979999999
Q ss_pred EEE---EEEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCC---------CCCCHHHHHHHHHHHH----HCCCCCCCE
Q ss_conf 778---997699997236679887689997889966043789---------8422676999999998----299962206
Q 005510 287 AEA---EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKG---------QVYSMLQGKRDVETVL----TMGIMEDVS 350 (693)
Q Consensus 287 ~eg---~I~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l~l~~G---------~~~n~~~l~~~~~~L~----~lg~F~~V~ 350 (693)
.|| +|++|.|. || ...++..+++.+.+++| ++|+...++.+.++|. +.||+. +.
T Consensus 153 ~eG~~~~I~~I~~~------Gn---~~~~~~~L~~~~~~~~g~~~~~~~~~~~~~~~~l~~d~~~l~~~y~~~GY~~-a~ 222 (395)
T 3efc_A 153 QEGVSAEIQQINIV------GN---HAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYAR-FN 222 (395)
T ss_dssp ECCCCCCCCCCEEE------SC---CSSCTTTTGGGCCCCSSCCSCCSCTTTHHHHHHHHHHHHHHHHHHHHTTCTT-CE
T ss_pred ECCCEEEEEEEEEE------CC---CCCCHHHHHHHHHCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCE-EE
T ss_conf 33880899999998------98---2169999999970777766011036884189999868999999998679966-99
Q ss_pred EEEECC---CCCCEEEEEEEEEECCCCEE
Q ss_conf 643059---99995999999997577049
Q 005510 351 IIPQPA---GDTGKVDLIMNVVERPSGGF 376 (693)
Q Consensus 351 i~~~~~---~~~~~v~i~i~V~E~~~~~l 376 (693)
+..... .+.+.++|.+.|.|+++..+
T Consensus 223 v~~~~~~~~~~~~~v~v~i~V~eG~~y~i 251 (395)
T 3efc_A 223 IDSTQVSLTPDKKGIYVTVNITEGDQYKL 251 (395)
T ss_dssp EEECCCEECTTSCSEECEEEEECCCCCEE
T ss_pred EECCEEEECCCCCEEEEEEEEECCCCEEE
T ss_conf 70568998799968999999814898899
No 6
>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A
Probab=1.00 E-value=1 Score=215.87 Aligned_cols=236 Identities=13% Similarity=0.197 Sum_probs=203.3
Q ss_pred CCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH----HCCCCCEEEEEEEE--
Q ss_conf 213586455249999999278986684438999999853068998527999999999999----74834517578873--
Q 005510 128 SVSRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRII----DSGYFCSCMPVAVD-- 201 (693)
Q Consensus 128 ~~~i~~~e~~~I~~I~i~G~~n~~i~~~~l~~~i~~~l~~~~~g~~~~~~~i~~d~~~L~----~~GYf~a~v~~~~~-- 201 (693)
.+.+.+.|+|.|++|.|.| |+.+++++|++.+.. ..+..|..|+...++++.++|. ++|||+|.|...+.
T Consensus 67 ~l~~~V~e~p~I~~i~~~G--n~~~~~~~l~~~l~~--~~l~~g~~~~~~~~~~~~~~l~~~y~~~GY~~a~v~~~~~~~ 142 (335)
T 2qdf_A 67 TLLVQVKERPTIASITFSG--NKSVKDDMLKQNLEA--SGVRVGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVTPL 142 (335)
T ss_dssp EEEEEEEECCEEEEEEEES--CCSSCHHHHHHHHHT--TTCCTTSBCCTTSHHHHHHHHHHHGGGGTBSSCEEEEEEEEE
T ss_pred EEEEEEEECCEEEEEEEEC--CCCCCHHHHHHHHHH--CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC
T ss_conf 9999999621898999999--865899999999975--487777624999999999999999997697421999999977
Q ss_pred CCCCEEEEEEEEECCCEE--EEEEECCCCCCHHHHHHHHCCCCC---------CCCCHHHHHHHHHHHHHHHHHCCC-EE
Q ss_conf 699389999992288269--999970767895689876135999---------700688899999999999996995-26
Q 005510 202 TRDGIRLVFQVEPNQEFH--GLVCEGANVLPTKFVEDAFRDGYG---------KVVNIRRLDEVITSINGWYMERGL-FG 269 (693)
Q Consensus 202 ~~~~v~i~i~V~EG~~i~--~I~i~G~~~~~~~~L~~~l~~~~G---------~~~~~~~l~~~~~~I~~~Y~~~GY-~a 269 (693)
.++.+.|+|.|+||++++ +|.|.|+..++++.|++.+..+.| ++|+...+.+++++|.++|+++|| .+
T Consensus 143 ~~~~~~v~~~i~eG~~~~i~~I~~~G~~~~~~~~l~~~~~~~~g~~~~~~~~g~~~~~~~l~~~~~~l~~~y~~~GY~~~ 222 (335)
T 2qdf_A 143 PRNRVDLKLVFQEGVSAEIQQINIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARF 222 (335)
T ss_dssp TTTEEEEEEEEECCCBCEEEEEEEESCCSSCHHHHHGGGSCC--------------CCSCHHHHHHHHHHHHHTTTCTTC
T ss_pred CCCEEEEEEEEECCCEEEEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 99869999999449879999999988734798899998646778640000469806899999789999999987898279
Q ss_pred EEEEE-EEEE--CC--EEEEEEEEE---EEEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 86418-9830--84--799999778---9976999972366798876899978899660437898422676999999998
Q 005510 270 MVSGV-EILS--GG--IIRLQVAEA---EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVL 341 (693)
Q Consensus 270 ~V~~~-~~~~--~g--~l~i~I~eg---~I~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l~l~~G~~~n~~~l~~~~~~L~ 341 (693)
+|... ...+ ++ .|++.|.|| ++++|.|. |+ ..+.+.+|++.+.+++|++||..+++++.++|.
T Consensus 223 ~v~~~~~~~~~~~~~v~v~i~v~eG~~~~i~~I~i~------g~---~~~~~~~l~~~~~~~~G~~~~~~~l~~~~~~l~ 293 (335)
T 2qdf_A 223 NIDSTQVSLTPDKKGIYVTVNITEGDQYKLSGVEVS------GN---LAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIK 293 (335)
T ss_dssp EEEEEEEEECTTSSEEEEEEEEECCCCCEEEEEEEE------EE---CTTCHHHHHHHTCCCTTEECCHHHHHHHHHHHH
T ss_pred EECCCEEEECCCCCEEEEEEEECCCCCEEEEEEEEE------CC---CCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 975888898379978999999736895799779998------46---668769999750789998329999999999999
Q ss_pred ----HCCC-CCCCEEEEECCCCCCEEEEEEEEEECCCCEE
Q ss_conf ----2999-6220664305999995999999997577049
Q 005510 342 ----TMGI-MEDVSIIPQPAGDTGKVDLIMNVVERPSGGF 376 (693)
Q Consensus 342 ----~lg~-F~~V~i~~~~~~~~~~v~i~i~V~E~~~~~l 376 (693)
++|| |.+|.+.+.+..+++.+++.+.|+|+++..+
T Consensus 294 ~~~~~~Gy~f~~v~~~~~~~~~~~~vdv~i~v~e~~~~~v 333 (335)
T 2qdf_A 294 KLLGRYGYAYPRVQSMPEINDADKTVKLRVNVDAGNRFYV 333 (335)
T ss_dssp HHHHTTTBSSCEEEEEEEEETTTTEEEEEEEEECCCBCCC
T ss_pred HHHHHCCCCCEEEEEEEEECCCCCEEEEEEEEEECCEEEE
T ss_conf 9998579872288876675588998999999920881783
No 7
>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A
Probab=1.00 E-value=1 Score=175.92 Aligned_cols=220 Identities=15% Similarity=0.270 Sum_probs=182.8
Q ss_pred CCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEEEEEEE
Q ss_conf 55249999999278986684438999999853068998527999999999999748345175788736993899999922
Q 005510 135 ERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEP 214 (693)
Q Consensus 135 e~~~I~~I~i~G~~n~~i~~~~l~~~i~~~l~~~~~g~~~~~~~i~~d~~~L~~~GYf~a~v~~~~~~~~~v~i~i~V~E 214 (693)
+.+.|.+|.|+| ++.++.+.|+. .+ .+++|+.+++..+++++++|++.|||+. |.+.. ++..|+|.|+|
T Consensus 6 ~~~~i~~i~v~G--~~~~~~~~i~~----~l-~~~~g~~~~~~~i~~~i~~L~~~g~f~~-v~v~~---~~~~l~~~V~e 74 (335)
T 2qdf_A 6 EGFVVKDIHFEG--LQRVAVGAALL----SM-PVRTGDTVNDEDISNTIRALFATGNFED-VRVLR---DGDTLLVQVKE 74 (335)
T ss_dssp CCEECCEEEEES--CSSSCHHHHHH----TS-SCCTTCEECHHHHHHHHHHHHTTSCEEE-EEEEE---ETTEEEEEEEE
T ss_pred CCCEEEEEEEEC--CEECCHHHHHH----HC-CCCCCCCCCHHHHHHHHHHHHHCCCCCE-EEEEE---CCCEEEEEEEE
T ss_conf 782686899999--87769999997----46-8899981699999999999996799645-89996---79899999996
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHCCC---CCCCCCHHHHHHHHHHHHHHHHHCCC-EEEEEEEEE-EECC--EEEEEEE
Q ss_conf 882699999707678956898761359---99700688899999999999996995-268641898-3084--7999997
Q 005510 215 NQEFHGLVCEGANVLPTKFVEDAFRDG---YGKVVNIRRLDEVITSINGWYMERGL-FGMVSGVEI-LSGG--IIRLQVA 287 (693)
Q Consensus 215 G~~i~~I~i~G~~~~~~~~L~~~l~~~---~G~~~~~~~l~~~~~~I~~~Y~~~GY-~a~V~~~~~-~~~g--~l~i~I~ 287 (693)
||++++|.|+||+.+++++|++.+..+ .|++|+...+++++++|.++|+++|| .|+|..... .+++ .|++.|.
T Consensus 75 ~p~I~~i~~~Gn~~~~~~~l~~~l~~~~l~~g~~~~~~~~~~~~~~l~~~y~~~GY~~a~v~~~~~~~~~~~~~v~~~i~ 154 (335)
T 2qdf_A 75 RPTIASITFSGNKSVKDDMLKQNLEASGVRVGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVTPLPRNRVDLKLVFQ 154 (335)
T ss_dssp CCEEEEEEEESCCSSCHHHHHHHHHTTTCCTTSBCCTTSHHHHHHHHHHHGGGGTBSSCEEEEEEEEETTTEEEEEEEEE
T ss_pred CCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEEEE
T ss_conf 21898999999865899999999975487777624999999999999999997697421999999977998699999994
Q ss_pred EE---EEEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCC---------CCCCHHHHHHHHHHHH----HCCCCCCCEE
Q ss_conf 78---997699997236679887689997889966043789---------8422676999999998----2999622066
Q 005510 288 EA---EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKG---------QVYSMLQGKRDVETVL----TMGIMEDVSI 351 (693)
Q Consensus 288 eg---~I~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l~l~~G---------~~~n~~~l~~~~~~L~----~lg~F~~V~i 351 (693)
|| +|++|.|. |+ ...++..+++.+.+++| ++|+...++++.++|. +.||+. +.+
T Consensus 155 eG~~~~i~~I~~~------G~---~~~~~~~l~~~~~~~~g~~~~~~~~g~~~~~~~l~~~~~~l~~~y~~~GY~~-~~v 224 (335)
T 2qdf_A 155 EGVSAEIQQINIV------GN---HAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYAR-FNI 224 (335)
T ss_dssp CCCBCEEEEEEEE------SC---CSSCHHHHHGGGSCC--------------CCSCHHHHHHHHHHHHHTTTCTT-CEE
T ss_pred CCCEEEEEEEEEE------CC---CCCCHHHHHHHHCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHCCCEE-EEE
T ss_conf 4987999999998------87---3479889999864677864000046980689999978999999998789827-997
Q ss_pred EE---ECCCCCCEEEEEEEEEECCCCE
Q ss_conf 43---0599999599999999757704
Q 005510 352 IP---QPAGDTGKVDLIMNVVERPSGG 375 (693)
Q Consensus 352 ~~---~~~~~~~~v~i~i~V~E~~~~~ 375 (693)
.. ....+++.++|.+.|.|+++..
T Consensus 225 ~~~~~~~~~~~~~v~v~i~v~eG~~~~ 251 (335)
T 2qdf_A 225 DSTQVSLTPDKKGIYVTVNITEGDQYK 251 (335)
T ss_dssp EEEEEEECTTSSEEEEEEEEECCCCCE
T ss_pred CCCEEEECCCCCEEEEEEEECCCCCEE
T ss_conf 588889837997899999973689579
No 8
>3q6b_A Outer membrane protein assembly complex, YAET Pro; potra fold, insertion of outer membrane proteins, protein BI; 1.50A {Escherichia coli} PDB: 3og5_A
Probab=1.00 E-value=1 Score=157.94 Aligned_cols=152 Identities=18% Similarity=0.238 Sum_probs=136.0
Q ss_pred EEEEECCCEE--EEEEECCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCC-EEEEEEE-EE-EECC--EE
Q ss_conf 9992288269--999970767895689876135999700688899999999999996995-2686418-98-3084--79
Q 005510 210 FQVEPNQEFH--GLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGL-FGMVSGV-EI-LSGG--II 282 (693)
Q Consensus 210 i~V~EG~~i~--~I~i~G~~~~~~~~L~~~l~~~~G~~~~~~~l~~~~~~I~~~Y~~~GY-~a~V~~~-~~-~~~g--~l 282 (693)
-..+|||+|+ +|.|.|+..++.++|++.+.+++|++|+...+++++++|.++|+++|| +++|.+. .. ..++ .|
T Consensus 27 ~~~~~~~~y~i~~I~i~G~~~~~~~~L~~~~~~~~G~~~~~~~l~~~~~~I~~~y~~~GY~~a~v~~~~~~d~~~~~v~l 106 (189)
T 3q6b_A 27 TGGQQMGRYKLSGVEVSGNLAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKTVKL 106 (189)
T ss_dssp --------CEEEEEEEEEECTTCHHHHHHHTCCCTTCBCCHHHHHHHHHHHHHHHHTTTCCSCEEEEEEEEETTTTEEEE
T ss_pred CCCCCCCCEEEEEEEEECCCCCCHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEE
T ss_conf 78999997799889997788689899998618999985089999999999999999679951786678786288988999
Q ss_pred EEEEEEE---EEEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECC-CC
Q ss_conf 9999778---9976999972366798876899978899660437898422676999999998299962206643059-99
Q 005510 283 RLQVAEA---EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPA-GD 358 (693)
Q Consensus 283 ~i~I~eg---~I~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l~l~~G~~~n~~~l~~~~~~L~~lg~F~~V~i~~~~~-~~ 358 (693)
++.|.|| +|++|.|. |+ .++++.+|++++++++|++||..++++++++|.++|+|+.|++.+.+. ..
T Consensus 107 ~~~V~eG~~~~i~~I~i~------Gn---~~~~~~~i~r~l~~~~G~~~n~~~l~~~~~~L~~lg~F~~V~i~~~~~~~~ 177 (189)
T 3q6b_A 107 RVNVDAGNRFYVRKIRFE------GN---DTSKDAVLRREMRQMEGAWLGSDLVDQGKERLNRLGFFETVDTDTQRVPGS 177 (189)
T ss_dssp EEEEECCCCCEEEEEEEE------SC---SSSCHHHHHTTCCSCTTSBCCHHHHHHHHHHHHHHSCCSEEEEEEEEETTE
T ss_pred EEEECCCCEEEEEEEEEE------CC---CCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCC
T ss_conf 999778975999999997------89---647989998644579997569999999999998479950457775158999
Q ss_pred CCEEEEEEEEEE
Q ss_conf 995999999997
Q 005510 359 TGKVDLIMNVVE 370 (693)
Q Consensus 359 ~~~v~i~i~V~E 370 (693)
++.++|.+.|+|
T Consensus 178 ~~~vdv~v~V~E 189 (189)
T 3q6b_A 178 PDQVDVVYKVKE 189 (189)
T ss_dssp EEEEEEEEEEEC
T ss_pred CCEEEEEEEEEC
T ss_conf 997889999879
No 9
>3q6b_A Outer membrane protein assembly complex, YAET Pro; potra fold, insertion of outer membrane proteins, protein BI; 1.50A {Escherichia coli} PDB: 3og5_A
Probab=1.00 E-value=1 Score=106.86 Aligned_cols=148 Identities=16% Similarity=0.179 Sum_probs=117.2
Q ss_pred CCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH----HCCCCCEEEEEEE--E-C
Q ss_conf 3586455249999999278986684438999999853068998527999999999999----7483451757887--3-6
Q 005510 130 SRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRII----DSGYFCSCMPVAV--D-T 202 (693)
Q Consensus 130 ~i~~~e~~~I~~I~i~G~~n~~i~~~~l~~~i~~~l~~~~~g~~~~~~~i~~d~~~L~----~~GYf~a~v~~~~--~-~ 202 (693)
..++++++.|++|.|.| |..++.+.|++ .+ .+++|++|+...++++.++|. ++||+.+.|...+ + .
T Consensus 28 ~~~~~~~y~i~~I~i~G--~~~~~~~~L~~----~~-~~~~G~~~~~~~l~~~~~~I~~~y~~~GY~~a~v~~~~~~d~~ 100 (189)
T 3q6b_A 28 GGQQMGRYKLSGVEVSG--NLAGHSAEIEQ----LT-KIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEINDA 100 (189)
T ss_dssp -------CEEEEEEEEE--ECTTCHHHHHH----HT-CCCTTCBCCHHHHHHHHHHHHHHHHTTTCCSCEEEEEEEEETT
T ss_pred CCCCCCCEEEEEEEEEC--CCCCCHHHHHH----HH-CCCCCCEECHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCC
T ss_conf 89999977998899977--88689899998----61-8999985089999999999999999679951786678786288
Q ss_pred CCCEEEEEEEEECCCEE--EEEEECCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEE--EEEEE-
Q ss_conf 99389999992288269--99997076789568987613599970068889999999999999699526864--18983-
Q 005510 203 RDGIRLVFQVEPNQEFH--GLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGMVS--GVEIL- 277 (693)
Q Consensus 203 ~~~v~i~i~V~EG~~i~--~I~i~G~~~~~~~~L~~~l~~~~G~~~~~~~l~~~~~~I~~~Y~~~GY~a~V~--~~~~~- 277 (693)
.+.+.|+|.|+||++++ .|.|.|+....+..|+..+.+++|++|+...+++.+++|. +.|||..|. +....
T Consensus 101 ~~~v~l~~~V~eG~~~~i~~I~i~Gn~~~~~~~i~r~l~~~~G~~~n~~~l~~~~~~L~----~lg~F~~V~i~~~~~~~ 176 (189)
T 3q6b_A 101 DKTVKLRVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVDQGKERLN----RLGFFETVDTDTQRVPG 176 (189)
T ss_dssp TTEEEEEEEEECCCCCEEEEEEEESCSSSCHHHHHTTCCSCTTSBCCHHHHHHHHHHHH----HHSCCSEEEEEEEEETT
T ss_pred CCEEEEEEEECCCCEEEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEECCCCC
T ss_conf 98899999977897599999999789647989998644579997569999999999998----47995045777515899
Q ss_pred ECCE--EEEEEEE
Q ss_conf 0847--9999977
Q 005510 278 SGGI--IRLQVAE 288 (693)
Q Consensus 278 ~~g~--l~i~I~e 288 (693)
.++. |.+.|.|
T Consensus 177 ~~~~vdv~v~V~E 189 (189)
T 3q6b_A 177 SPDQVDVVYKVKE 189 (189)
T ss_dssp EEEEEEEEEEEEC
T ss_pred CCCEEEEEEEEEC
T ss_conf 9997889999879
No 10
>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} PDB: 3njt_A
Probab=1.00 E-value=1 Score=100.38 Aligned_cols=263 Identities=18% Similarity=0.132 Sum_probs=167.2
Q ss_pred CCC---CCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH----HCCCCCEEEEEEE-EC
Q ss_conf 586---455249999999278986684438999999853068998527999999999999----7483451757887-36
Q 005510 131 RSD---EERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRII----DSGYFCSCMPVAV-DT 202 (693)
Q Consensus 131 i~~---~e~~~I~~I~i~G~~n~~i~~~~l~~~i~~~l~~~~~g~~~~~~~i~~d~~~L~----~~GYf~a~v~~~~-~~ 202 (693)
-.+ +++..|++|.|+| |..++.++|++ .+ ..+.|+.|+...+++++++|. ++||..+.|.... +.
T Consensus 50 ~~e~~~g~~~~i~~I~~~G--~~~~~~~~l~~----~~-~~~~G~~~~~~~l~~~~~~i~~~y~~~GY~~a~v~~~~~~~ 122 (554)
T 2qdz_A 50 KPDATSGHTVTVHAVDLDF--GVEGRLFDPAP----LV-QDYLNRPLDNEQLFLLVKALSAALYDRGYATSIVTFVPPGV 122 (554)
T ss_dssp ---CBCCCSSSSCCEEEEC--CSSSCCCSCST----TS-TTSSSSCBCSTTHHHHHHHHHHHHHHTTCTTCEEEEEEEEE
T ss_pred CCCCCCCCEEEEEEEEEEC--CCCCCHHHHHH----HH-HHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 7211588619999999978--86389999998----75-76438877999999999999999997695522588166335
Q ss_pred CCCEEEEEEEEECCCEEEEEEECCCCCCHHHHHH---HHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEE--E
Q ss_conf 9938999999228826999997076789568987---6135999700688899999999999996995268641898--3
Q 005510 203 RDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVED---AFRDGYGKVVNIRRLDEVITSINGWYMERGLFGMVSGVEI--L 277 (693)
Q Consensus 203 ~~~v~i~i~V~EG~~i~~I~i~G~~~~~~~~L~~---~l~~~~G~~~~~~~l~~~~~~I~~~Y~~~GY~a~V~~~~~--~ 277 (693)
.++ .|++.|.||+ +.+|.++|+...++..++. .+.+++|++|+..+|++..++|... + ..|.+... .
T Consensus 123 ~~g-~l~i~v~eG~-i~~I~i~G~~~~~~~~l~~~~~~~~~~~G~~~n~~~le~~~~~L~~~----~--~~v~~~~~p~~ 194 (554)
T 2qdz_A 123 VDG-VLKLKVEWGR-IKGWLIDGKPLEGTRDRMMVFSAMPGWQDKVLNVFDIDQAIYNINNG----G--KTGNITIVPAD 194 (554)
T ss_dssp ETT-EEEEEEECCE-EEEEEETTEECCSHHHHHHHHHHSTTCTTCBCCHHHHHHHHHHHCSS----S--EEEEEEEEECS
T ss_pred CCC-EEEEEEEEEE-EEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCC----C--HHCEEEEECCC
T ss_conf 688-8999998689-88999889876553666313331445689967789999999997538----1--32169990278
Q ss_pred ECCE--EEEEEEEEEEEEEEEEECCCCCC--CCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCC-CCCEEE
Q ss_conf 0847--99999778997699997236679--887689997889966043789842267699999999829996-220664
Q 005510 278 SGGI--IRLQVAEAEVNNISIRFLDRKTG--EPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIM-EDVSII 352 (693)
Q Consensus 278 ~~g~--l~i~I~eg~I~~I~i~~~~~~~G--n~~~~~t~~~~I~r~l~l~~G~~~n~~~l~~~~~~L~~lg~F-~~V~i~ 352 (693)
..+. |.+.|.|.+--.+.+.+.. .| . ..+ |-+ -.+.+.
T Consensus 195 ~~g~~~l~v~v~e~~~~~~~~g~~~--~g~g~---~~t--------------------------------g~~~~~~~~~ 237 (554)
T 2qdz_A 195 EYGYSYLDLQLQRRALPRVSLGMDN--SGPGT---PEN--------------------------------GRYKYNASVT 237 (554)
T ss_dssp STTEEEEEEEEEECCSCEEEEEEEE--CSCSS---SCS--------------------------------SCEEEEEEEE
T ss_pred CCCEEEEEEEEEECCCEEEEEEECC--CCCCC---CCC--------------------------------CCEEEEEEEE
T ss_conf 7991699999866793899999857--89888---770--------------------------------4347899998
Q ss_pred EEC-CCCCCEEEEEEEEEE----CCCCEEEEEEEEECCCCCCCCCCEEEEEEEEECC--CCCCCEEEEEEEEECCEEEEE
Q ss_conf 305-999995999999997----5770499967562476788875308999996335--676870899999960322599
Q 005510 353 PQP-AGDTGKVDLIMNVVE----RPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRN--VFGRNQKLNISLERGQIDSIF 425 (693)
Q Consensus 353 ~~~-~~~~~~v~i~i~V~E----~~~~~l~~g~gyss~~~~g~~~g~~~~~~~~~~N--lfG~G~~l~~~~~~s~~~~~~ 425 (693)
... -...+.+.+.+.+.+ ++.....++++|+.-. + ..++.+.+.+...| +.|.+..+. .......+
T Consensus 238 ~~n~~g~gd~l~~~~~~~~~~~~~~~~~~~~~~~y~~P~--~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~s~~~ 310 (554)
T 2qdz_A 238 ANDLLGLNDTLGLYIGNRYYRDAGHDAERNYDLMYSVPL--G-RTRLDLQTGYSTYRNLLKTRYGQYQ----SAGNSRSF 310 (554)
T ss_dssp EECSSSSSCEEEEEEEEECCSCCSSCEEEEEEEEEEEEE--T-TEEEEEEEEEEEEECCCSSSSCCCC----CEEEEEEE
T ss_pred ECCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEEEE--E-CCEEEEEEEEEEEEEECCCCCCEEE----EEEEEEEE
T ss_conf 279889886899999845755667888148999999988--1-5707999999678878168862699----98568999
Q ss_pred EEEEECCCCCCCCCCEEEEEEEEEECC
Q ss_conf 999961522489983079999985216
Q 005510 426 RINYTDPWIEGDDKRTSRTIMVQNSRT 452 (693)
Q Consensus 426 ~l~y~~P~~~~~~~~~s~~~~~~~~~~ 452 (693)
.+.+..|+.......+++++.+.+.+.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (554)
T 2qdz_A 311 GLKATRLLYRDTRSQFSVYGGLKLRQN 337 (554)
T ss_dssp EEEEEEEEECCSSEEEEEEEEEEEEEE
T ss_pred EEEEEEEEEECCCEEEEEEEEEEEEEE
T ss_conf 999997899788727999999999985
Done!