Query 005510
Match_columns 693
No_of_seqs 242 out of 2275
Neff 7.9
Searched_HMMs 13730
Date Tue Mar 26 18:13:42 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005510.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_2018-2022//hhsearch_scop/005510hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vqza1 d.224.1.3 (A:242-329) 65.5 2.2 0.00016 16.8 2.8 62 278-349 14-77 (88)
2 d1x2ga1 d.224.1.3 (A:247-337) 33.0 8.9 0.00065 13.3 5.8 49 282-340 20-68 (91)
3 d2fnaa1 a.4.5.11 (A:284-356) H 7.4 42 0.0031 9.4 2.1 24 169-192 31-54 (73)
4 d3etja1 b.84.2.1 (A:277-355) N 7.4 43 0.0031 9.3 0.2 14 133-146 33-46 (79)
5 d1t6sa1 a.4.5.60 (A:1-85) Segr 7.1 45 0.0033 9.2 4.6 44 225-272 19-65 (85)
6 d2cc0a1 c.6.2.3 (A:1-192) Acet 5.9 57 0.0041 8.6 2.5 35 239-273 145-184 (192)
7 d2bf5a1 d.137.1.1 (A:11-102) T 5.2 68 0.0049 8.2 3.1 36 212-251 31-66 (92)
8 d1qapa1 c.1.17.1 (A:130-296) Q 4.7 75 0.0055 7.9 0.7 25 48-72 19-43 (167)
9 d1ppji_ d.184.1.3 (I:) Ubiquin 4.2 87 0.0063 7.6 0.2 17 90-106 14-30 (47)
10 d2fyui1 d.184.1.3 (I:1-57) Ubi 4.0 94 0.0068 7.4 0.8 12 90-101 45-56 (57)
No 1
>d1vqza1 d.224.1.3 (A:242-329) LplA-like protein SP1160, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=65.54 E-value=2.2 Score=16.82 Aligned_cols=62 Identities=16% Similarity=0.221 Sum_probs=32.3
Q ss_pred ECCE--EEEEEEEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 0847--99999778997699997236679887689997889966043789842267699999999829996220
Q 005510 278 SGGI--IRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDV 349 (693)
Q Consensus 278 ~~g~--l~i~I~eg~I~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l~l~~G~~~n~~~l~~~~~~L~~lg~F~~V 349 (693)
+.|. +.++|..|.|.++.|. |. -.....|...-..-.|..|+.+.+.+....+.-..||..+
T Consensus 14 ~~G~vev~l~V~~G~I~~iki~------GD----ff~~~~i~~le~~L~G~~y~~~~i~~~L~~~~~~~Yf~~i 77 (88)
T d1vqza1 14 TSGKVEVFANVTESKIQDIKIY------GD----FFGIEDVAAVEDVLRGVKYEREDVLKALKTIDITRYFAGI 77 (88)
T ss_dssp TTEEEEEEEEEETTEEEEEEEE------ES----CCCSSCTHHHHHHHTTCBSSHHHHHHHHTTSCGGGTSTTC
T ss_pred CCCEEEEEEEEECCEEEEEEEE------EC----CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHCCC
T ss_conf 8867999999818989799998------04----7993129999999769977899999999848888874789
No 2
>d1x2ga1 d.224.1.3 (A:247-337) Two-domain LplA, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=33.03 E-value=8.9 Score=13.27 Aligned_cols=49 Identities=10% Similarity=0.228 Sum_probs=19.8
Q ss_pred EEEEEEEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99999778997699997236679887689997889966043789842267699999999
Q 005510 282 IRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETV 340 (693)
Q Consensus 282 l~i~I~eg~I~~I~i~~~~~~~Gn~~~~~t~~~~I~r~l~l~~G~~~n~~~l~~~~~~L 340 (693)
+.++|..|.|.++.|. |. -.....|...-..-.|-+|+.+.+.+....+
T Consensus 20 ~~l~V~~G~I~~~~i~------gD----fl~~~~i~~le~~L~G~~y~~~~i~~~l~~~ 68 (91)
T d1x2ga1 20 LHFDVEKGHITRAQVF------TD----SLNPAPLEALAGRLQGCLYRADMLQQECEAL 68 (91)
T ss_dssp EEEEEETTEEEEEEEE------EC----CSCCHHHHHHHHHHTTCBSSHHHHHHHHHHT
T ss_pred EEEEEECCEEEEEEEE------CC----CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 9999727989899998------68----8992789999999769986899999999998
No 3
>d2fnaa1 a.4.5.11 (A:284-356) Hypothetical protein SSO1545, C-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}
Probab=7.43 E-value=42 Score=9.36 Aligned_cols=24 Identities=4% Similarity=0.200 Sum_probs=13.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 899852799999999999974834
Q 005510 169 RANSALTVREVQEDVHRIIDSGYF 192 (693)
Q Consensus 169 ~~g~~~~~~~i~~d~~~L~~~GYf 192 (693)
+.|...+...+.+.+++|.+.||.
T Consensus 31 ~~G~~I~d~~ls~lL~nL~k~~~i 54 (73)
T d2fnaa1 31 EEGIEISDSEIYNYLTQLTKHSWI 54 (73)
T ss_dssp HHCSCCCHHHHHHHHHHHHHTTSE
T ss_pred HCCCCCCHHHHHHHHHHHHHCCCE
T ss_conf 708878858999999999875764
No 4
>d3etja1 b.84.2.1 (A:277-355) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), C-domain {Escherichia coli [TaxId: 562]}
Probab=7.41 E-value=43 Score=9.35 Aligned_cols=14 Identities=0% Similarity=-0.035 Sum_probs=8.0
Q ss_pred CCCCCEEEEEEEEE
Q ss_conf 64552499999992
Q 005510 133 DEERVLISEVLVRN 146 (693)
Q Consensus 133 ~~e~~~I~~I~i~G 146 (693)
+.+.-++.-|.+.|
T Consensus 33 ~RpgRKmGHitl~~ 46 (79)
T d3etja1 33 VRPGRKVGHLNLTD 46 (79)
T ss_dssp CCTTCEEEEEEEEC
T ss_pred CCCCCCEEEEEEEC
T ss_conf 88997578798615
No 5
>d1t6sa1 a.4.5.60 (A:1-85) Segregation and condensation protein B, ScpB {Chlorobium tepidum [TaxId: 1097]}
Probab=7.10 E-value=45 Score=9.21 Aligned_cols=44 Identities=11% Similarity=0.174 Sum_probs=30.3
Q ss_pred CCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH--CCC-EEEEE
Q ss_conf 0767895689876135999700688899999999999996--995-26864
Q 005510 225 GANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYME--RGL-FGMVS 272 (693)
Q Consensus 225 G~~~~~~~~L~~~l~~~~G~~~~~~~l~~~~~~I~~~Y~~--~GY-~a~V~ 272 (693)
..+.++.++|.+.+ ++..+...+.+..+.|+..|.+ +|+ ...+.
T Consensus 19 s~~Pls~~~L~~~l----~~~~~~~~i~~~l~~L~~~y~~~~~g~el~~~~ 65 (85)
T d1t6sa1 19 SEEPVNLQTLSQIT----AHKFTPSELQEAVDELNRDYEATGRTFRIHAIA 65 (85)
T ss_dssp CSSCBCHHHHHHHT----TCCCCHHHHHHHHHHHHHHHHHHTCSEEEEEET
T ss_pred CCCCCCHHHHHHHH----CCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 48998999999987----558999999999999999985079867999999
No 6
>d2cc0a1 c.6.2.3 (A:1-192) Acetyl-xylan esterase {Streptomyces lividans [TaxId: 1916]}
Probab=5.91 E-value=57 Score=8.62 Aligned_cols=35 Identities=31% Similarity=0.345 Sum_probs=22.8
Q ss_pred CCCCCCCCC----HHHHHHHHHHHHHHHHHCCC-EEEEEE
Q ss_conf 359997006----88899999999999996995-268641
Q 005510 239 RDGYGKVVN----IRRLDEVITSINGWYMERGL-FGMVSG 273 (693)
Q Consensus 239 ~~~~G~~~~----~~~l~~~~~~I~~~Y~~~GY-~a~V~~ 273 (693)
..+.|.++- ...-.+....|.++++++|| |+.|+.
T Consensus 145 ~~~~G~IiL~Hd~~~~t~~aL~~ii~~lk~~Gy~fvtlse 184 (192)
T d2cc0a1 145 RLGNGQVILMHDWPANTLAAIPRIAQTLAGKGLCSGMISP 184 (192)
T ss_dssp TCCTTCEEEEESSCHHHHHHHHHHHHHHHHTTEEECEECT
T ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 6589969997189520999999999999988998997266
No 7
>d2bf5a1 d.137.1.1 (A:11-102) Toluene-4-monooxygenase catalytic effector protein {Pseudomonas mendocina [TaxId: 300]}
Probab=5.15 E-value=68 Score=8.18 Aligned_cols=36 Identities=28% Similarity=0.542 Sum_probs=14.4
Q ss_pred EEECCCEEEEEEECCCCCCHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 9228826999997076789568987613599970068889
Q 005510 212 VEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRL 251 (693)
Q Consensus 212 V~EG~~i~~I~i~G~~~~~~~~L~~~l~~~~G~~~~~~~l 251 (693)
|+..|.+-.|.-.|.-.+..+.+.+.+ |++|+.+.+
T Consensus 31 V~d~~a~vrI~a~g~L~i~r~tieE~L----Gr~~~~~el 66 (92)
T d2bf5a1 31 VEDRRAYVRIAAEGELILTRKTLEEQL----GRPFNMQEL 66 (92)
T ss_dssp EECCTTCEEEEEESEEEEEHHHHHHHH----TSCCCHHHH
T ss_pred EEECCCEEEEECCCEEEEEHHHHHHHH----CCCCCHHHE
T ss_conf 950686899902985999878989985----898606874
No 8
>d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=4.74 E-value=75 Score=7.92 Aligned_cols=25 Identities=28% Similarity=0.131 Sum_probs=21.4
Q ss_pred CCCCCCCCCCHHCCHHHHHHCCCCC
Q ss_conf 1255778620000000122203641
Q 005510 48 NESTRSTEPFTRKLQSFAEHLYGKS 72 (693)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (693)
.-.||-|-|..|+++..|-+.=|-.
T Consensus 19 i~~TRKT~PGlR~l~k~Av~~GGg~ 43 (167)
T d1qapa1 19 LLDTRKTLPGLRTALKYAVLCGGGA 43 (167)
T ss_dssp EECCSCCCTTCHHHHHHHHHHHTCB
T ss_pred EEECCCCCCCHHHHHHHHHHHHCCC
T ss_conf 9843688815689999999981660
No 9
>d1ppji_ d.184.1.3 (I:) Ubiquinol-cytochrome c reductase 8 kDa protein {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.23 E-value=87 Score=7.56 Aligned_cols=17 Identities=24% Similarity=0.505 Sum_probs=11.1
Q ss_pred CCCCCCCCCCCCCCCCC
Q ss_conf 57742112233345557
Q 005510 90 VNFPLLCSASLSLNQSS 106 (693)
Q Consensus 90 ~~~~~~~~~~~~~~~~~ 106 (693)
.+-|+||-+||+--.+.
T Consensus 14 ~krpfLcrESLsGqa~~ 30 (47)
T d1ppji_ 14 LKLSVLCRESLRGQAAG 30 (47)
T ss_dssp ----CCSHHHHTTCSCC
T ss_pred CCCCEEEHHHCCCCCCC
T ss_conf 36662551010675655
No 10
>d2fyui1 d.184.1.3 (I:1-57) Ubiquinol-cytochrome c reductase 8 kDa protein {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.98 E-value=94 Score=7.37 Aligned_cols=12 Identities=33% Similarity=0.636 Sum_probs=9.1
Q ss_pred CCCCCCCCCCCC
Q ss_conf 577421122333
Q 005510 90 VNFPLLCSASLS 101 (693)
Q Consensus 90 ~~~~~~~~~~~~ 101 (693)
.+-|+||-+||+
T Consensus 45 ~KrpfLcRESl~ 56 (57)
T d2fyui1 45 LKRSVLCRESLR 56 (57)
T ss_dssp SCCCCSCSSCCC
T ss_pred CCCCEEEHHHCC
T ss_conf 677625421216
Done!