BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005511
(693 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/691 (53%), Positives = 482/691 (69%), Gaps = 66/691 (9%)
Query: 24 TLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGL 83
LE+YG +LT+LA EGKLDPV+GR +I RV+QIL RRTKNNP LIGEPGVGKTAI EGL
Sbjct: 152 ALEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGL 211
Query: 84 AQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSD-EIILFIDE 142
AQRI GDVP+ ++GK++++L MG L+AG KYRGEFEERLK +++E+ QS E+ILFIDE
Sbjct: 212 AQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDE 271
Query: 143 VHTLXXXXXXXXXXXXXXXLKPSLARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVP 202
+HT+ LKP+LARGEL+ IGATTLDEYR+ IEKDPALERRFQPV V
Sbjct: 272 LHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYRE-IEKDPALERRFQPVYVD 330
Query: 203 EPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGS 262
EP+V+ETI IL+GL+E+YE+HH +R +D A+++AA LS++YI++R LPDKAIDLIDEA +
Sbjct: 331 EPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAA 390
Query: 263 RVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLK------AQIS 316
R+R+ PEE LE++ Q+ E+ + +D + L+ E ++ A++
Sbjct: 391 RLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLR 450
Query: 317 ALVDKGKEMSK----------------------------AETEAGDVGPVVTEV------ 342
A ++ +E+ + AE G++ + EV
Sbjct: 451 AEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEK 510
Query: 343 --------------DIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAI 388
DI IVS WTGIPV K+ E ++LL++EE LHKRV+GQDEA++A+
Sbjct: 511 LRGARFVRLEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAV 570
Query: 389 SRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMER 448
+ AIRRAR GLK+PNRPI SF+F GPTGVGK+ELAK LAA F +EEAMIR+DM+E+ME+
Sbjct: 571 ADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEK 630
Query: 449 HTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLT 508
H VS+LIG+PPGYVGY EGGQLTEAVRRRPY+V+LFDEIEKAHPDVFN++LQIL+DGRLT
Sbjct: 631 HAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLT 690
Query: 509 DSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYF 568
DS GRTVDF+NT++I+TSN+GS +I +G +K Y RI+ V + L+Q+F
Sbjct: 691 DSHGRTVDFRNTVIILTSNLGSPLILEG----------LQKGWPYERIRDEVFKVLQQHF 740
Query: 569 RPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYN 628
RPEFLNRLDE++VFR LTK ++++I +I L + RL K I L+ GY+
Sbjct: 741 RPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYD 800
Query: 629 PSYGARPLRRAIMRLLEDSMAEKMLAREIKE 659
P +GARPLRR I R LE +A+K+LA E+KE
Sbjct: 801 PVFGARPLRRVIQRELETPLAQKILAGEVKE 831
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/631 (55%), Positives = 446/631 (70%), Gaps = 61/631 (9%)
Query: 23 PTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEG 82
PTL+ +LT +A+E LDPV+GR +I+RV+++L RRTKNNP LIGEPGVGKTAIAEG
Sbjct: 161 PTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEG 220
Query: 83 LAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDE 142
LAQ+I + +VP+ + K+V+TLDMG TKYRGEFE+RLKK+M+EI+Q+ IILFID
Sbjct: 221 LAQQIINNEVPEILRDKRVMTLDMG-----TKYRGEFEDRLKKVMDEIRQAGNIILFID- 274
Query: 143 VHTLXXXXXXXXXXXXXXXLKPSLARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVP 202
LKPSLARGELQCIGATTLDEYRK+IEKD ALERRFQP++V
Sbjct: 275 -----------AAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVD 323
Query: 203 EPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGS 262
+PSVDE+IQIL+GLR+RYE HH++ TD+A+ +A +LS +YISDRFLPDKAIDLIDEAGS
Sbjct: 324 QPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGS 383
Query: 263 RVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKG 322
+VRLR P +ELE++L ++ KEK+ AV+ Q+FEKA LRD E L+ Q+
Sbjct: 384 KVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSW 443
Query: 323 KEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQD 382
KE + G VT DI +VS+WTG+PV K++ E+D+LL ME LH RVIGQD
Sbjct: 444 KE------KQGQENSEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQD 497
Query: 383 EAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDM 442
EAV A+++A+RRAR GLK+P RPI SFIF GPTGVGK+ELA+ALA FG EE+MIR+DM
Sbjct: 498 EAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDM 557
Query: 443 SEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQIL 502
SE+ME+H+ T GGQLTE VRR+PY+VVL D IEKAHPDVFN++LQ+L
Sbjct: 558 SEYMEKHS--------------TSGGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVL 603
Query: 503 EDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTE 562
EDGRLTDSKGRTVDF+NT+LIMTSNVG+S EKD V
Sbjct: 604 EDGRLTDSKGRTVDFRNTILIMTSNVGAS----------------EKDK--------VMG 639
Query: 563 ELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXX 622
ELK+ FRPEF+NR+DE+IVF L K + EI +M ++ RLK +D+ ++
Sbjct: 640 ELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKV 699
Query: 623 XXXGYNPSYGARPLRRAIMRLLEDSMAEKML 653
G + YGARPLRRAI + +ED ++E++L
Sbjct: 700 AEEGVDLEYGARPLRRAIQKHVEDRLSEELL 730
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 367 bits (943), Expect = e-101, Method: Compositional matrix adjust.
Identities = 190/331 (57%), Positives = 240/331 (72%), Gaps = 23/331 (6%)
Query: 23 PTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEG 82
PTL+ +LT +A+E LDPV+GR +I+RV+++L RRTKNNP LIGEPGVGKTAIAEG
Sbjct: 161 PTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEG 220
Query: 83 LAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDE 142
LAQ+I + +VP+ + K+V+TLDMG TKYRGEFE+RLKK+M+EI+Q+ IILFID
Sbjct: 221 LAQQIINNEVPEILRDKRVMTLDMG-----TKYRGEFEDRLKKVMDEIRQAGNIILFID- 274
Query: 143 VHTLXXXXXXXXXXXXXXXLKPSLARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVP 202
LKPSLARGELQCIGATTLDEYRK+IEKD ALERRFQP++V
Sbjct: 275 -----------AAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVD 323
Query: 203 EPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGS 262
+PSVDE+IQIL+GLR+RYE HH++ TD+A+ +A +LS +YISDRFLPDKAIDLIDEAGS
Sbjct: 324 QPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGS 383
Query: 263 RVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKG 322
+VRLR P +ELE++L ++ KEK+ AV+ Q+FEKA LRD E L+ Q+
Sbjct: 384 KVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSW 443
Query: 323 KEMSKAETEAGDVGPVVTEVDIQHIVSAWTG 353
KE + G VT DI +VS+WTG
Sbjct: 444 KE------KQGQENSEVTVDDIAMVVSSWTG 468
>pdb|4FCT|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|D Chain D, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 308
Score = 357 bits (917), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 174/285 (61%), Positives = 221/285 (77%), Gaps = 10/285 (3%)
Query: 375 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE 434
HKRV+GQDEA++A++ AIRRAR GLK+PNRPI SF+F GPTGVGK+ELAK LAA F +E
Sbjct: 13 HKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE 72
Query: 435 EAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDV 494
EAMIR+DM+E+ME+H VS+LIG+PPGYVGY EGGQLTEAVRRRPY+V+LFD IEKAHPDV
Sbjct: 73 EAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDV 132
Query: 495 FNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYN 554
FN++LQIL+DGRLTDS GRTVDF+NT++I+TSN+GS +I +G +K Y
Sbjct: 133 FNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEG----------LQKGWPYE 182
Query: 555 RIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQX 614
RI+ V + L+Q+FRPEFLNRLDE++VFR LTK ++++I +I L + RL K I L+
Sbjct: 183 RIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLEL 242
Query: 615 XXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 659
GY+P +GARPLRR I R LE +A+K+LA E+KE
Sbjct: 243 TEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKE 287
>pdb|4FCV|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|F Chain F, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 311
Score = 344 bits (883), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 169/285 (59%), Positives = 215/285 (75%), Gaps = 10/285 (3%)
Query: 375 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE 434
HKRV+GQDEA++A++ AIRRAR GLK+PNRPI SF+F GPTGVGK+ELAK LAA F +E
Sbjct: 16 HKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE 75
Query: 435 EAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDV 494
EA IR+D +E+ E+H VS+LIG+PPGYVGY EGGQLTEAVRRRPY+V+LFD IEKAHPDV
Sbjct: 76 EAXIRIDXTEYXEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDV 135
Query: 495 FNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYN 554
FN++LQ L+DGRLTDS GRTVDF+NT++I TSN+GS +I +G +K Y
Sbjct: 136 FNILLQXLDDGRLTDSHGRTVDFRNTVIIXTSNLGSPLILEG----------LQKGWPYE 185
Query: 555 RIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQX 614
RI+ V + L+Q+FRPEFLNRLDE++VFR LTK ++++I +I + RL K I L+
Sbjct: 186 RIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQXSYLRARLAEKRISLEL 245
Query: 615 XXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 659
GY+P +GARPLRR I R LE +A+K+LA E+KE
Sbjct: 246 TEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKE 290
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 328 bits (842), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 172/299 (57%), Positives = 229/299 (76%), Gaps = 6/299 (2%)
Query: 24 TLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGL 83
LE+YG +LT+LA EGKLDPV+GR +I RV+QIL RRTKNNP LIGEPGVGKTAI EGL
Sbjct: 15 ALEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGL 74
Query: 84 AQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSD-EIILFIDE 142
AQRI GDVP+ ++GK++++L MG L+AG KYRGEFEERLK +++E+ QS E+ILFIDE
Sbjct: 75 AQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDE 134
Query: 143 VHTLXXXXXXXXXXXXXXXLKPSLARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVP 202
+HT+ LKP+LARGEL+ IGATTLDEYR+ IEKDPALERRFQPV V
Sbjct: 135 LHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYRE-IEKDPALERRFQPVYVD 193
Query: 203 EPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGS 262
EP+V+ETI IL+GL+E+YE+HH +R +D A+++AA LS++YI++R LPDKAIDLIDEA +
Sbjct: 194 EPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAA 253
Query: 263 RVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDK 321
R+R+ PEE LE++ Q+ E+ EA++ EK + ++R ++A+I+ L ++
Sbjct: 254 RLRMALESAPEEIDALERKKLQLEIER-EALKK---EKDPDSQERLKAIEAEIAKLTEE 308
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 12/80 (15%)
Query: 276 RELEKELRQITKEKNEAVRGQDFEKAGELRDREM-DLKAQISALVDK--GKEMSKAETEA 332
RE + L ++ +E A R D +A ELR E+ L+A++ AL +K G + E
Sbjct: 327 REAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFVRLE--- 383
Query: 333 GDVGPVVTEVDIQHIVSAWT 352
VTE DI IVS WT
Sbjct: 384 ------VTEEDIAEIVSRWT 397
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 265 bits (676), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 125/243 (51%), Positives = 175/243 (72%), Gaps = 1/243 (0%)
Query: 25 LEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLA 84
LE + TNL +LA G +DP++GR+ ++ER +Q+L RR KNNP L+GE GVGKTAIAEGLA
Sbjct: 169 LENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLA 228
Query: 85 QRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVH 144
RI GDVP+ + + +LD+G L+AGTKYRG+FE+R K L+++++Q ILFIDE+H
Sbjct: 229 WRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIH 288
Query: 145 TLXXXXXXXXXXXXXXXL-KPSLARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPE 203
T+ L KP L+ G+++ IG+TT E+ EKD AL RRFQ + + E
Sbjct: 289 TIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITE 348
Query: 204 PSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSR 263
PS++ET+QI+ GL+ +YE HH +RYT +A+ +A +L+ +YI+DR LPDKAID+IDEAG+R
Sbjct: 349 PSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGAR 408
Query: 264 VRL 266
RL
Sbjct: 409 ARL 411
Score = 249 bits (637), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 131/315 (41%), Positives = 200/315 (63%), Gaps = 14/315 (4%)
Query: 339 VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVG 398
V DI+ +V+ IP + VS + D L + + L V GQD+A++A++ AI+ AR G
Sbjct: 421 VNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAG 480
Query: 399 LKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSP 458
L + ++P+ SF+F+GPTGVGK+E+ L+ G E ++R DMSE+MERHTVS+LIG+P
Sbjct: 481 LGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA-LGIE--LLRFDMSEYMERHTVSRLIGAP 537
Query: 459 PGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFK 518
PGYVG+ +GG LT+AV + P+ V+L DEIEKAHPDVFN++LQ++++G LTD+ GR DF+
Sbjct: 538 PGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFR 597
Query: 519 NTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDE 578
N +L+MT+N G E+ + IG +D+S + + EE+K+ F PEF NRLD
Sbjct: 598 NVVLVMTTNAGVRETER--KSIGL----IHQDNSTDAM-----EEIKKIFTPEFRNRLDN 646
Query: 579 MIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRR 638
+I F L+ + ++ D + E+ +L K + L+ GY+ + GARP+ R
Sbjct: 647 IIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMAR 706
Query: 639 AIMRLLEDSMAEKML 653
I L+ +A ++L
Sbjct: 707 VIQDNLKKPLANELL 721
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 243 bits (621), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 119/194 (61%), Positives = 150/194 (77%), Gaps = 1/194 (0%)
Query: 22 MPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAE 81
M L++Y +LT+ AE+GKLDPV+GR +I R +Q+L RRTKNNP LIGEPGVGKTAI E
Sbjct: 2 MQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVE 61
Query: 82 GLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEI-KQSDEIILFI 140
GLAQRI +G+VP+ ++G++V+ LDMG LVAG KYRGEFEERLK ++ ++ KQ +ILFI
Sbjct: 62 GLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFI 121
Query: 141 DEVHTLXXXXXXXXXXXXXXXLKPSLARGELQCIGATTLDEYRKHIEKDPALERRFQPVK 200
DE+HT+ LKP+LARGEL C+GATTLDEYR++IEKD ALERRFQ V
Sbjct: 122 DELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVF 181
Query: 201 VPEPSVDETIQILK 214
V EPSV++TI IL+
Sbjct: 182 VAEPSVEDTIAILR 195
>pdb|2P65|A Chain A, Crystal Structure Of The First Nucleotide Binding Domain
Of Chaperone Clpb1, Putative, (Pv089580) From Plasmodium
Vivax
Length = 187
Score = 216 bits (550), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 103/184 (55%), Positives = 139/184 (75%), Gaps = 2/184 (1%)
Query: 24 TLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGL 83
LE+Y +LT LA GKLDPV+GR +I R +QIL RRTKNNP L+G+PGVGKTAI EGL
Sbjct: 4 ALEKYSRDLTALARAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGL 63
Query: 84 AQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSD-EIILFIDE 142
A +I GDVPD+++G+K+++LD+ L+AG KYRG+FEERLK +++E++ ++ ++++FIDE
Sbjct: 64 AIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDE 123
Query: 143 VHTLXXXXXXXXXXX-XXXXLKPSLARGELQCIGATTLDEYRKHIEKDPALERRFQPVKV 201
+HT+ LKP LARGEL+CIGATT+ EYR+ IEKD ALERRFQ + V
Sbjct: 124 IHTVVGAGAVAEGALDAGNILKPMLARGELRCIGATTVSEYRQFIEKDKALERRFQQILV 183
Query: 202 PEPS 205
+PS
Sbjct: 184 EQPS 187
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 66/121 (54%), Gaps = 11/121 (9%)
Query: 374 LHKRVIGQDEAVKAISRAIRRA--RVGLKNPNRPIAS---FIFSGPTGVGKSELAKALAA 428
L + +IGQ +A +A++ A+R R+ L+ P R + + GPTGVGK+E+A+ LA
Sbjct: 13 LDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72
Query: 429 YYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIE 488
+ I+++ ++F E V K + S + + GG + +AV + +V DEI+
Sbjct: 73 L---ANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAI-DAVEQN--GIVFIDEID 126
Query: 489 K 489
K
Sbjct: 127 K 127
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 8/89 (8%)
Query: 374 LHKRVIGQDEAVKAISRAIRRA--RVGLKNPNR---PIASFIFSGPTGVGKSELAKALAA 428
L + +IGQ +A +A++ A+R R+ L+ P R + + GPTGVGK+E+A+ LA
Sbjct: 13 LDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72
Query: 429 YYFGSEEAMIRLDMSEFMERHTVSKLIGS 457
+ I+++ ++F E V K + S
Sbjct: 73 L---ANAPFIKVEATKFTEVGYVGKEVDS 98
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 10/90 (11%)
Query: 374 LHKRVIGQDEAVKAISRAIR----RARVG--LKNPNRPIASFIFSGPTGVGKSELAKALA 427
L K +IGQD A ++++ A+R R ++ L++ P + + GPTGVGK+E+A+ LA
Sbjct: 12 LDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTP-KNILMIGPTGVGKTEIARRLA 70
Query: 428 AYYFGSEEAMIRLDMSEFMERHTVSKLIGS 457
+ I+++ ++F E V K + S
Sbjct: 71 KL---ANAPFIKVEATKFTEVGYVGKEVDS 97
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 10/90 (11%)
Query: 374 LHKRVIGQDEAVKAISRAIR----RARVG--LKNPNRPIASFIFSGPTGVGKSELAKALA 427
L K +IGQD A ++++ A+R R ++ L++ P + + GPTGVGK+E+A+ LA
Sbjct: 19 LDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTP-KNILMIGPTGVGKTEIARRLA 77
Query: 428 AYYFGSEEAMIRLDMSEFMERHTVSKLIGS 457
+ I+++ ++F E V K + S
Sbjct: 78 KL---ANAPFIKVEATKFTEVGYVGKEVDS 104
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 10/90 (11%)
Query: 374 LHKRVIGQDEAVKAISRAIR----RARVG--LKNPNRPIASFIFSGPTGVGKSELAKALA 427
L K +IGQD A ++++ A+R R ++ L++ P + + GPTGVGK+E+A+ LA
Sbjct: 13 LDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTP-KNILMIGPTGVGKTEIARRLA 71
Query: 428 AYYFGSEEAMIRLDMSEFMERHTVSKLIGS 457
+ I+++ ++F E V K + S
Sbjct: 72 KL---ANAPFIKVEATKFTEVGYVGKEVDS 98
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 8/89 (8%)
Query: 374 LHKRVIGQDEAVKAISRAIRRA--RVGLKNPNR---PIASFIFSGPTGVGKSELAKALAA 428
L + +IGQ +A +A++ A+R R L+ P R + + GPTGVGK+E+A+ LA
Sbjct: 13 LDQHIIGQADAKRAVAIALRNRWRRXQLQEPLRHEVTPKNILXIGPTGVGKTEIARRLAK 72
Query: 429 YYFGSEEAMIRLDMSEFMERHTVSKLIGS 457
+ I+++ ++F E V K + S
Sbjct: 73 L---ANAPFIKVEATKFTEVGYVGKEVDS 98
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 43/77 (55%), Gaps = 12/77 (15%)
Query: 70 GEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEE 129
G PG GKT +A+ +A + + +I+G +++T+ + GE E ++++ ++
Sbjct: 56 GPPGCGKTLLAKAIANECQANFI--SIKGPELLTM----------WFGESEANVREIFDK 103
Query: 130 IKQSDEIILFIDEVHTL 146
+Q+ +LF DE+ ++
Sbjct: 104 ARQAAPCVLFFDELDSI 120
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 86/195 (44%), Gaps = 42/195 (21%)
Query: 351 WTGIPVEKVSTDESDRLLKME----ETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPI 406
WT +K+ E+ RLL E E + +R++ + AV+ ++++ LK P
Sbjct: 62 WTDETDDKLDLKEAGRLLDEEHHGLEKVKERIL-EYLAVQKLTKS-------LKGP---- 109
Query: 407 ASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRL----DMSEFMERHTVSKLIGSPPGYV 462
+GP GVGK+ LAK++A G + I L D SE R +G+ PG +
Sbjct: 110 -ILCLAGPPGVGKTSLAKSIAK-SLGRKFVRISLGGVRDESEI--RGHRRTYVGAMPGRI 165
Query: 463 --GYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDV----FNMMLQIL---EDGRLTDSK-G 512
G + G+L V L DEI+K D + ML++L ++ +D
Sbjct: 166 IQGMKKAGKLN--------PVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIE 217
Query: 513 RTVDFKNTLLIMTSN 527
T D L I T+N
Sbjct: 218 ETFDLSKVLFIATAN 232
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 102/236 (43%), Gaps = 37/236 (15%)
Query: 67 CLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERL--- 123
CL G PGVGKT++A+ +A+ + G+K + + +G + ++ RG +
Sbjct: 112 CLAGPPGVGKTSLAKSIAKSL----------GRKFVRISLGGVRDESEIRGHRRTYVGAM 161
Query: 124 -KKLMEEIKQSDEI--ILFIDEVHTLXXXXXXXXXXXXXXXLKPSLARGELQCIGATTLD 180
++++ +K++ ++ + +DE+ + S RG+ LD
Sbjct: 162 PGRIIQGMKKAGKLNPVFLLDEIDKMS-----------------SDFRGDPSSAMLEVLD 204
Query: 181 EYRKHIEKDPALERRFQPVKVPEPSVDETIQILKG-LRERYEIHHKLRYTD-EAL-VSAA 237
+ D +E F KV + + + G LR+R EI + YT+ E L +
Sbjct: 205 PEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKD 264
Query: 238 QLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAV 293
L + I + L + L D+A + +R+ R LE++L I ++ +A+
Sbjct: 265 HLLPKQIKEHGLKKSNLQLRDQAILDI-IRYYTREAGVRSLERQLAAICRKAAKAI 319
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 43/77 (55%), Gaps = 12/77 (15%)
Query: 70 GEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEE 129
G PG GKT +A+ +A + + +I+G +++T+ + GE E ++++ ++
Sbjct: 518 GPPGCGKTLLAKAIANECQANFI--SIKGPELLTM----------WFGESEANVREIFDK 565
Query: 130 IKQSDEIILFIDEVHTL 146
+Q+ +LF DE+ ++
Sbjct: 566 ARQAAPCVLFFDELDSI 582
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 12/79 (15%)
Query: 68 LIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLM 127
L G PG GKT IA +A +G I G ++++ K GE E L+K
Sbjct: 243 LYGPPGTGKTLIARAVANE--TGAFFFLINGPEIMS----------KLAGESESNLRKAF 290
Query: 128 EEIKQSDEIILFIDEVHTL 146
EE +++ I+FIDE+ +
Sbjct: 291 EEAEKNAPAIIFIDELDAI 309
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 43/77 (55%), Gaps = 12/77 (15%)
Query: 70 GEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEE 129
G PG GKT +A+ +A + + +I+G +++T+ + GE E ++++ ++
Sbjct: 518 GPPGCGKTLLAKAIANECQANFI--SIKGPELLTM----------WFGESEANVREIFDK 565
Query: 130 IKQSDEIILFIDEVHTL 146
+Q+ +LF DE+ ++
Sbjct: 566 ARQAAPCVLFFDELDSI 582
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 12/79 (15%)
Query: 68 LIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLM 127
L G PG GKT IA +A +G I G ++++ K GE E L+K
Sbjct: 243 LYGPPGTGKTLIARAVANE--TGAFFFLINGPEIMS----------KLAGESESNLRKAF 290
Query: 128 EEIKQSDEIILFIDEVHTL 146
EE +++ I+FIDE+ +
Sbjct: 291 EEAEKNAPAIIFIDELDAI 309
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 12/89 (13%)
Query: 58 LGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRG 117
LG T L G PG GKT +A+ +A SG +++G +++ + Y G
Sbjct: 39 LGLVTPAGVLLAGPPGCGKTLLAKAVANE--SGLNFISVKGPELLNM----------YVG 86
Query: 118 EFEERLKKLMEEIKQSDEIILFIDEVHTL 146
E E ++++ + K S ++F DEV L
Sbjct: 87 ESERAVRQVFQRAKNSAPCVIFFDEVDAL 115
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 12/79 (15%)
Query: 68 LIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLM 127
L G PG GKT IA +A +G I G ++++ K GE E L+K
Sbjct: 243 LYGPPGTGKTLIARAVANE--TGAFFFLINGPEIMS----------KLAGESESNLRKAF 290
Query: 128 EEIKQSDEIILFIDEVHTL 146
EE +++ I+FIDE+ +
Sbjct: 291 EEAEKNAPAIIFIDELDAI 309
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 12/79 (15%)
Query: 68 LIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLM 127
L G PG GKT IA +A +G I G ++++ K GE E L+K
Sbjct: 243 LYGPPGTGKTLIARAVANE--TGAFFFLINGPEIMS----------KLAGESESNLRKAF 290
Query: 128 EEIKQSDEIILFIDEVHTL 146
EE +++ I+FIDE+ +
Sbjct: 291 EEAEKNAPAIIFIDELDAI 309
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 12/79 (15%)
Query: 68 LIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLM 127
L G PG GKT IA +A +G I G ++++ K GE E L+K
Sbjct: 243 LYGPPGTGKTLIARAVANE--TGAFFFLINGPEIMS----------KLAGESESNLRKAF 290
Query: 128 EEIKQSDEIILFIDEVHTL 146
EE +++ I+FIDE+ +
Sbjct: 291 EEAEKNAPAIIFIDELDAI 309
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 12/79 (15%)
Query: 68 LIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLM 127
L G PG GKT IA +A +G I G ++++ K GE E L+K
Sbjct: 243 LYGPPGTGKTLIARAVANE--TGAFFFLINGPEIMS----------KLAGESESNLRKAF 290
Query: 128 EEIKQSDEIILFIDEVHTL 146
EE +++ I+FIDE+ +
Sbjct: 291 EEAEKNAPAIIFIDELDAI 309
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 14/87 (16%)
Query: 58 LGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPD-TIEGKKVITLDMGLLVAGTKYR 116
+G R L+G PGVGKT +A +A VP T G + + +G+ A
Sbjct: 68 MGARIPKGVLLVGPPGVGKTHLARAVA---GEARVPFITASGSDFVEMFVGVGAA----- 119
Query: 117 GEFEERLKKLMEEIKQSDEIILFIDEV 143
R++ L E K+ I+FIDE+
Sbjct: 120 -----RVRDLFETAKRHAPCIVFIDEI 141
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 22/98 (22%)
Query: 399 LKNPNR--------PIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHT 450
LKNP+R P + GP GVGK+ LA+A+A + I S+F+E
Sbjct: 59 LKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLARAVAGE---ARVPFITASGSDFVE--- 111
Query: 451 VSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIE 488
+G VG L E +R +V DEI+
Sbjct: 112 --MFVG-----VGAARVRDLFETAKRHAPCIVFIDEID 142
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 14/87 (16%)
Query: 58 LGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPD-TIEGKKVITLDMGLLVAGTKYR 116
+G R L+G PGVGKT +A +A VP T G + + +G+ A
Sbjct: 59 MGARIPKGVLLVGPPGVGKTHLARAVA---GEARVPFITASGSDFVEMFVGVGAA----- 110
Query: 117 GEFEERLKKLMEEIKQSDEIILFIDEV 143
R++ L E K+ I+FIDE+
Sbjct: 111 -----RVRDLFETAKRHAPCIVFIDEI 132
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 22/98 (22%)
Query: 399 LKNPNR--------PIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHT 450
LKNP+R P + GP GVGK+ LA+A+A + I S+F+E
Sbjct: 50 LKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLARAVAGE---ARVPFITASGSDFVE--- 102
Query: 451 VSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIE 488
+G VG L E +R +V DEI+
Sbjct: 103 --MFVG-----VGAARVRDLFETAKRHAPCIVFIDEID 133
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 45/111 (40%), Gaps = 23/111 (20%)
Query: 68 LIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLM 127
L G PG GKT +AE +A R A+ DV + + +G K E E +++
Sbjct: 55 LWGPPGTGKTTLAEVIA-RYANADVE-----------RISAVTSGVK---EIREAIERAR 99
Query: 128 EEIKQSDEIILFIDEVHTLXXXXXXXXXXXXXXXLKPSLARGELQCIGATT 178
+ ILF+DEVH P + G + IGATT
Sbjct: 100 QNRNAGRRTILFVDEVHRF--------NKSQQDAFLPHIEDGTITFIGATT 142
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 67/163 (41%), Gaps = 40/163 (24%)
Query: 378 VIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE--E 435
V+GQDE ++ + + R KN I +FSGP G GK+ A ALA FG +
Sbjct: 19 VVGQDEVIQRLKGYVER-----KN----IPHLLFSGPPGTGKTATAIALARDLFGENWRD 69
Query: 436 AMIRLDMSE----FMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAH 491
I ++ S+ + RH + + + P GG P+ ++ DE +
Sbjct: 70 NFIEMNASDERGIDVVRHKIKEFARTAP------IGGA--------PFKIIFLDEADALT 115
Query: 492 PDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIE 534
D + + +E + K+ I++ N S +IE
Sbjct: 116 ADAQAALRRTME-----------MYSKSCRFILSCNYVSRIIE 147
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 41 LDPVVGRQPQIERVVQILGRRTKNNPCLI--GEPGVGKTAIAEGLAQ 85
LD VVG+ I+R+ + R KN P L+ G PG GKTA A LA+
Sbjct: 16 LDEVVGQDEVIQRLKGYVER--KNIPHLLFSGPPGTGKTATAIALAR 60
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 67/163 (41%), Gaps = 40/163 (24%)
Query: 378 VIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE--E 435
V+GQDE ++ + + R KN I +FSGP G GK+ A ALA FG +
Sbjct: 19 VVGQDEVIQRLKGYVER-----KN----IPHLLFSGPPGTGKTATAIALARDLFGENWRD 69
Query: 436 AMIRLDMSE----FMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAH 491
I ++ S+ + RH + + + P GG P+ ++ DE +
Sbjct: 70 NFIEMNASDERGIDVVRHKIKEFARTAP------IGGA--------PFKIIFLDEADALT 115
Query: 492 PDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIE 534
D + + +E + K+ I++ N S +IE
Sbjct: 116 ADAQAALRRTME-----------MYSKSCRFILSCNYVSRIIE 147
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 41 LDPVVGRQPQIERVVQILGRRTKNNPCLI--GEPGVGKTAIAEGLAQ 85
LD VVG+ I+R+ + R KN P L+ G PG GKTA A LA+
Sbjct: 16 LDEVVGQDEVIQRLKGYVER--KNIPHLLFSGPPGTGKTATAIALAR 60
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 14/92 (15%)
Query: 56 QILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVP-DTIEGKKVITLDMGLLVAGTK 114
Q LG + ++G PG GKT +A+ +A VP TI G + + +G+ +
Sbjct: 38 QKLGGKIPKGVLMVGPPGTGKTLLAKAIA---GEAKVPFFTISGSDFVEMFVGVGAS--- 91
Query: 115 YRGEFEERLKKLMEEIKQSDEIILFIDEVHTL 146
R++ + E+ K++ I+FIDE+ +
Sbjct: 92 -------RVRDMFEQAKKAAPCIIFIDEIDAV 116
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 14/90 (15%)
Query: 58 LGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPD-TIEGKKVITLDMGLLVAGTKYR 116
+G R L+G PGVGKT +A +A VP T G + + +G+ A
Sbjct: 68 MGARIPKGVLLVGPPGVGKTHLARAVA---GEARVPFITASGSDFVEMFVGVGAA----- 119
Query: 117 GEFEERLKKLMEEIKQSDEIILFIDEVHTL 146
R++ L E K+ I+FIDE+ +
Sbjct: 120 -----RVRDLFETAKRHAPCIVFIDEIDAV 144
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 22/98 (22%)
Query: 399 LKNPNR--------PIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHT 450
LKNP+R P + GP GVGK+ LA+A+A + I S+F+E
Sbjct: 59 LKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLARAVAGE---ARVPFITASGSDFVE--- 111
Query: 451 VSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIE 488
+G VG L E +R +V DEI+
Sbjct: 112 --MFVG-----VGAARVRDLFETAKRHAPCIVFIDEID 142
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 68 LIGEPGVGKTAIAEGLAQRIASGDVPDT-IEGKKVITLDM 106
+ G+PG GKTAIA G+AQ + D P T I G ++ +L+M
Sbjct: 75 IAGQPGTGKTAIAMGMAQALGP-DTPFTAIAGSEIFSLEM 113
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 14/90 (15%)
Query: 58 LGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPD-TIEGKKVITLDMGLLVAGTKYR 116
+G R L+G PGVGKT +A +A VP T G + + +G+ A
Sbjct: 44 MGARIPKGVLLVGPPGVGKTHLARAVA---GEARVPFITASGSDFVEMFVGVGAA----- 95
Query: 117 GEFEERLKKLMEEIKQSDEIILFIDEVHTL 146
R++ L E K+ I+FIDE+ +
Sbjct: 96 -----RVRDLFETAKRHAPCIVFIDEIDAV 120
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 22/98 (22%)
Query: 399 LKNPNR--------PIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHT 450
LKNP+R P + GP GVGK+ LA+A+A + I S+F+E
Sbjct: 35 LKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLARAVAGE---ARVPFITASGSDFVE--- 87
Query: 451 VSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIE 488
+G VG L E +R +V DEI+
Sbjct: 88 --MFVG-----VGAARVRDLFETAKRHAPCIVFIDEID 118
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 12/89 (13%)
Query: 59 GRRTKNNPCLI-GEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRG 117
G+RT L+ G PG GK+ +A+ +A A+ +I +++ K+ G
Sbjct: 40 GKRTPWRGILLFGPPGTGKSYLAKAVATE-ANNSTFFSISSSDLVS----------KWLG 88
Query: 118 EFEERLKKLMEEIKQSDEIILFIDEVHTL 146
E E+ +K L + +++ I+FIDE+ +L
Sbjct: 89 ESEKLVKNLFQLARENKPSIIFIDEIDSL 117
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 11/79 (13%)
Query: 68 LIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLM 127
L G PG GK+ +A+ +A A+ +I +++ K+ GE E+ +K L
Sbjct: 172 LFGPPGTGKSYLAKAVATE-ANNSTFFSISSSDLVS----------KWLGESEKLVKNLF 220
Query: 128 EEIKQSDEIILFIDEVHTL 146
+ +++ I+FIDE+ +L
Sbjct: 221 QLARENKPSIIFIDEIDSL 239
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 15/92 (16%)
Query: 397 VGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIG 456
G + P R I F GP G GKS LAKA+A + + S+ VSK +G
Sbjct: 161 TGKRTPWRGILLF---GPPGTGKSYLAKAVATE--ANNSTFFSISSSDL-----VSKWLG 210
Query: 457 SPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIE 488
V L + R +++ DEI+
Sbjct: 211 ESEKLV-----KNLFQLARENKPSIIFIDEID 237
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 12/87 (13%)
Query: 60 RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEF 119
R+ + L G PG GK+ +A+ +A S ++ LV +K+ GE
Sbjct: 57 RKPTSGILLYGPPGTGKSYLAKAVATEANS----------TFFSVSSSDLV--SKWMGES 104
Query: 120 EERLKKLMEEIKQSDEIILFIDEVHTL 146
E+ +K+L +++ I+FIDEV L
Sbjct: 105 EKLVKQLFAMARENKPSIIFIDEVDAL 131
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 13/90 (14%)
Query: 399 LKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSP 458
K +P + + GP G GKS LAKA+A + ++ D+ VSK +G
Sbjct: 53 FKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL--------VSKWMGES 104
Query: 459 PGYVGYTEGGQLTEAVRRRPYTVVLFDEIE 488
V QL R +++ DE++
Sbjct: 105 EKLV-----KQLFAMARENKPSIIFIDEVD 129
>pdb|3V4R|A Chain A, Crystal Structure Of A Uvrb Dimer-Dna Complex
pdb|3V4R|B Chain B, Crystal Structure Of A Uvrb Dimer-Dna Complex
Length = 667
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 276 RELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQ 314
+E +K + Q+ E EA + DFE+A ELRD ++LKA+
Sbjct: 628 KERQKVVEQMEHEMKEAAKALDFERAAELRDLLLELKAE 666
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 14/90 (15%)
Query: 58 LGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVP-DTIEGKKVITLDMGLLVAGTKYR 116
LG + L+G PG GKT +A+ +A VP ++ G I + +GL +
Sbjct: 39 LGAKIPKGVLLVGPPGTGKTLLAKAVA---GEAHVPFFSMGGSSFIEMFVGLGAS----- 90
Query: 117 GEFEERLKKLMEEIKQSDEIILFIDEVHTL 146
R++ L E K+ I+FIDE+ +
Sbjct: 91 -----RVRDLFETAKKQAPSIIFIDEIDAI 115
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 14/90 (15%)
Query: 58 LGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVP-DTIEGKKVITLDMGLLVAGTKYR 116
+G R L+G PG GKT +A +A +VP I G + L +G+ A
Sbjct: 44 IGARMPKGILLVGPPGTGKTLLARAVA---GEANVPFFHISGSDFVELFVGVGAA----- 95
Query: 117 GEFEERLKKLMEEIKQSDEIILFIDEVHTL 146
R++ L + K I+FIDE+ +
Sbjct: 96 -----RVRDLFAQAKAHAPCIVFIDEIDAV 120
>pdb|2D7D|A Chain A, Structural Insights Into The Cryptic Dna Dependent Atp-Ase
Activity Of Uvrb
pdb|2NMV|A Chain A, Damage Detection By The Uvrabc Pathway: Crystal Structure
Of Uvrb Bound To Fluorescein-Adducted Dna
Length = 661
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 276 RELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQ 314
+E +K + Q+ E EA + DFE+A ELRD ++LKA+
Sbjct: 622 KERQKVVEQMEHEMKEAAKALDFERAAELRDLLLELKAE 660
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 12/87 (13%)
Query: 60 RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEF 119
R+ + L G PG GK+ +A+ +A S ++ LV +K+ GE
Sbjct: 81 RKPTSGILLYGPPGTGKSYLAKAVATEANS----------TFFSVSSSDLV--SKWMGES 128
Query: 120 EERLKKLMEEIKQSDEIILFIDEVHTL 146
E+ +K+L +++ I+FID+V L
Sbjct: 129 EKLVKQLFAMARENKPSIIFIDQVDAL 155
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 399 LKNPNRPIASFIFSGPTGVGKSELAKALA 427
K +P + + GP G GKS LAKA+A
Sbjct: 77 FKGNRKPTSGILLYGPPGTGKSYLAKAVA 105
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 12/79 (15%)
Query: 68 LIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLM 127
L G PG GKT I + +A + G ++ L +K+ GE E+ ++ L
Sbjct: 122 LFGPPGTGKTLIGKCIASQ----------SGATFFSISASSLT--SKWVGEGEKMVRALF 169
Query: 128 EEIKQSDEIILFIDEVHTL 146
+ ++FIDE+ +L
Sbjct: 170 AVARCQQPAVIFIDEIDSL 188
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 15/93 (16%)
Query: 52 ERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPD-TIEGKKVITLDMGLLV 110
ER +Q LG + L+G PG GKT +A+ +A VP + G + + + GL
Sbjct: 29 ERFLQ-LGAKVPKGALLLGPPGCGKTLLAKAVATE---AQVPFLAMAGAEFVEVIGGLGA 84
Query: 111 AGTKYRGEFEERLKKLMEEIKQSDEIILFIDEV 143
A R++ L +E + I++IDE+
Sbjct: 85 A----------RVRSLFKEARARAPCIVYIDEI 107
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 12/87 (13%)
Query: 60 RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEF 119
R+ + L G PG GK+ +A+ +A S ++ LV +K+ GE
Sbjct: 48 RKPTSGILLYGPPGTGKSYLAKAVATEANS----------TFFSVSSSDLV--SKWMGES 95
Query: 120 EERLKKLMEEIKQSDEIILFIDEVHTL 146
E+ +K+L +++ I+FID+V L
Sbjct: 96 EKLVKQLFAMARENKPSIIFIDQVDAL 122
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 399 LKNPNRPIASFIFSGPTGVGKSELAKALA 427
K +P + + GP G GKS LAKA+A
Sbjct: 44 FKGNRKPTSGILLYGPPGTGKSYLAKAVA 72
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 12/87 (13%)
Query: 60 RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEF 119
R+ + L G PG GK+ +A+ +A S ++ LV +K+ GE
Sbjct: 66 RKPTSGILLYGPPGTGKSYLAKAVATEANS----------TFFSVSSSDLV--SKWMGES 113
Query: 120 EERLKKLMEEIKQSDEIILFIDEVHTL 146
E+ +K+L +++ I+FID+V L
Sbjct: 114 EKLVKQLFAMARENKPSIIFIDQVDAL 140
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 399 LKNPNRPIASFIFSGPTGVGKSELAKALA 427
K +P + + GP G GKS LAKA+A
Sbjct: 62 FKGNRKPTSGILLYGPPGTGKSYLAKAVA 90
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 12/93 (12%)
Query: 54 VVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGT 113
+ Q +G + L G PG GKT +A+ +A TI + + G++
Sbjct: 206 IFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA---------TIGANFIFSPASGIV---D 253
Query: 114 KYRGEFEERLKKLMEEIKQSDEIILFIDEVHTL 146
KY GE ++++ K+ + I+F+DEV +
Sbjct: 254 KYIGESARIIREMFAYAKEHEPCIIFMDEVDAI 286
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 396 RVGLKNPNRPIASFIFSGPTGVGKSELAKALAA 428
RVG+K P + GP G GK+ LAKA+AA
Sbjct: 209 RVGIKPPK----GVLLYGPPGTGKTLLAKAVAA 237
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 68 LIGEPGVGKTAIAEGLAQRIASGDVPDT-IEGKKVITLD 105
+ G+PG GKTAIA G AQ + D P T I G ++ +L+
Sbjct: 90 IAGQPGTGKTAIAXGXAQALGP-DTPFTAIAGSEIFSLE 127
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 16/87 (18%)
Query: 62 TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGE-FE 120
+K+N LIG G GKT +A+ LA+ + D+P I +T AG Y GE E
Sbjct: 71 SKSNILLIGPTGSGKTLMAQTLAKHL---DIPIAISDATSLT------EAG--YVGEDVE 119
Query: 121 ERLKKLME----EIKQSDEIILFIDEV 143
L +L++ ++++ + I+FIDE+
Sbjct: 120 NILTRLLQASDWNVQKAQKGIVFIDEI 146
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 6/81 (7%)
Query: 63 KNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEER 122
K+N LIG G GKT +AE LA+ + DVP T+ +T + G + G ++
Sbjct: 51 KSNILLIGPTGSGKTLLAETLARLL---DVPFTMADATTLT-EAGYV--GEDVENIIQKL 104
Query: 123 LKKLMEEIKQSDEIILFIDEV 143
L+K +++++ I++ID++
Sbjct: 105 LQKCDYDVQKAQRGIVYIDQI 125
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 374 LHKRVIGQDEAVKAISRAIRRARVGLKNPNRPI------ASFIFSGPTGVGKSELAKALA 427
L VIGQ++A K ++ A+ L+N + ++ + GPTG GK+ LA+ LA
Sbjct: 13 LDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA 72
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 6/81 (7%)
Query: 63 KNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEER 122
K+N LIG G GKT +AE LA+ + DVP T+ +T + G + G ++
Sbjct: 51 KSNILLIGPTGSGKTLLAETLARLL---DVPFTMADATTLT-EAGYV--GEDVENIIQKL 104
Query: 123 LKKLMEEIKQSDEIILFIDEV 143
L+K +++++ I++ID++
Sbjct: 105 LQKCDYDVQKAQRGIVYIDQI 125
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 374 LHKRVIGQDEAVKAISRAIRRARVGLKNPNRPI------ASFIFSGPTGVGKSELAKALA 427
L VIGQ++A K ++ A+ L+N + ++ + GPTG GK+ LA+ LA
Sbjct: 13 LDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA 72
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 38/162 (23%)
Query: 378 VIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAM 437
++GQ+ VK + ++ + +F+GP GVGK+ A ALA FG
Sbjct: 27 IVGQEHIVKRLKHYVKTG---------SMPHLLFAGPPGVGKTTAALALARELFGEN--- 74
Query: 438 IRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRP-----YTVVLFDEIEKAHP 492
RH +L S + ++ E R +P + ++ DE +
Sbjct: 75 ---------WRHNFLELNASDERGINVIR-EKVKEFARTKPIGGASFKIIFLDEADALTQ 124
Query: 493 DVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIE 534
D + + +E + N I++ N S +IE
Sbjct: 125 DAQQALRRTME-----------MFSSNVRFILSCNYSSKIIE 155
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 40 KLDPVVGRQPQIERVVQILGRRTKNNPCLI--GEPGVGKTAIAEGLAQRI 87
+LD +VG++ ++R+ + +T + P L+ G PGVGKT A LA+ +
Sbjct: 23 RLDDIVGQEHIVKRLKHYV--KTGSMPHLLFAGPPGVGKTTAALALAREL 70
>pdb|3GLF|B Chain B, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|C Chain C, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|D Chain D, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|G Chain G, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|H Chain H, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|I Chain I, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLI|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
Length = 395
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 8/50 (16%)
Query: 378 VIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALA 427
V+GQ+ + A++ + R+ +++FSG GVGK+ +A+ LA
Sbjct: 40 VVGQEHVLTALANGLSLGRIH--------HAYLFSGTRGVGKTSIARLLA 81
>pdb|3GLH|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|L Chain L, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|M Chain M, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|N Chain N, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
Length = 376
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 8/50 (16%)
Query: 378 VIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALA 427
V+GQ+ + A++ + R+ +++FSG GVGK+ +A+ LA
Sbjct: 21 VVGQEHVLTALANGLSLGRIH--------HAYLFSGTRGVGKTSIARLLA 62
>pdb|1JR3|A Chain A, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|B Chain B, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|C Chain C, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1XXH|B Chain B, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|C Chain C, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|D Chain D, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|G Chain G, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|H Chain H, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|I Chain I, Atpgs Bound E. Coli Clamp Loader Complex
Length = 373
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 8/50 (16%)
Query: 378 VIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALA 427
V+GQ+ + A++ + R+ +++FSG GVGK+ +A+ LA
Sbjct: 18 VVGQEHVLTALANGLSLGRIH--------HAYLFSGTRGVGKTSIARLLA 59
>pdb|3GLG|B Chain B, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|C Chain C, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|D Chain D, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|G Chain G, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|H Chain H, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|I Chain I, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
Length = 395
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 8/50 (16%)
Query: 378 VIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALA 427
V+GQ+ + A++ + R+ +++FSG GVGK+ +A+ LA
Sbjct: 40 VVGQEHVLTALANGLSLGRIH--------HAYLFSGTRGVGKTSIARLLA 81
>pdb|1XXI|B Chain B, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|C Chain C, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|D Chain D, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|G Chain G, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|H Chain H, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|I Chain I, Adp Bound E. Coli Clamp Loader Complex
Length = 368
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 8/50 (16%)
Query: 378 VIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALA 427
V+GQ+ + A++ + R+ +++FSG GVGK+ +A+ LA
Sbjct: 18 VVGQEHVLTALANGLSLGRIH--------HAYLFSGTRGVGKTSIARLLA 59
>pdb|1NJG|A Chain A, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJG|B Chain B, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|A Chain A, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|B Chain B, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|C Chain C, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|D Chain D, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
Length = 250
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 8/50 (16%)
Query: 378 VIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALA 427
V+GQ+ + A++ + R+ +++FSG GVGK+ +A+ LA
Sbjct: 25 VVGQEHVLTALANGLSLGRIH--------HAYLFSGTRGVGKTSIARLLA 66
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 14/90 (15%)
Query: 58 LGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVP-DTIEGKKVITLDMGLLVAGTKYR 116
+G R L+G PG G T +A +A +VP I G + L +G+ A
Sbjct: 44 IGARMPKGILLVGPPGTGATLLARAVA---GEANVPFFHISGSDFVELFVGVGAA----- 95
Query: 117 GEFEERLKKLMEEIKQSDEIILFIDEVHTL 146
R++ L + K I+FIDE+ +
Sbjct: 96 -----RVRDLFAQAKAHAPCIVFIDEIDAV 120
>pdb|3UWX|B Chain B, Crystal Structure Of Uvra-Uvrb Complex
Length = 683
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 276 RELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQ 314
+E E+ +R++ E EA + DFE+A +LRD +LKA+
Sbjct: 644 QEREELIRKLEAEMKEAAKALDFERAAQLRDIIFELKAE 682
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 405 PIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 449
P + GP G GK+ L KA+A ++ A IR++ SEF+ ++
Sbjct: 205 PPRGVLLYGPPGTGKTMLVKAVAN---STKAAFIRVNGSEFVHKY 246
>pdb|2D7D|B Chain B, Structural Insights Into The Cryptic Dna Dependent Atp-Ase
Activity Of Uvrb
Length = 40
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 276 RELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQ 314
+E +K + Q+ E EA + DFE+A ELRD ++LKA+
Sbjct: 1 KERQKVVEQMEHEMKEAAKALDFERAAELRDLLLELKAE 39
>pdb|2GA8|A Chain A, Crystal Structure Of Yfh7 From Saccharomyces Cerevisiae:
A Putative P-Loop Containing Kinase With A Circular
Permutation.
pdb|2GAA|A Chain A, Crystal Structure Of Yfh7 From Saccharomyces Cerevisiae:
A Putative P-Loop Containing Kinase With A Circular
Permutation
Length = 359
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Query: 54 VVQILGRRTKNN--PC--LIGEPGVGKTAIAEGLAQRI 87
V+Q+L R ++N C L+G PG GK+ IAE L Q I
Sbjct: 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELXQII 48
>pdb|2NMV|B Chain B, Damage Detection By The Uvrabc Pathway: Crystal Structure
Of Uvrb Bound To Fluorescein-Adducted Dna
Length = 38
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 276 RELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKA 313
+E +K + Q+ E EA + DFE+A ELRD ++LKA
Sbjct: 1 KERQKVVEQMEHEMKEAAKALDFERAAELRDLLLELKA 38
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query: 68 LIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLM 127
L G PG GKT +A+ +A ++ +KY GE E+ ++ L
Sbjct: 153 LFGPPGNGKTMLAKAVAAE------------SNATFFNISAASLTSKYVGEGEKLVRALF 200
Query: 128 EEIKQSDEIILFIDEVHTL 146
++ I+FID+V +L
Sbjct: 201 AVARELQPSIIFIDQVDSL 219
>pdb|3PPL|A Chain A, Crystal Structure Of An Aspartate Transaminase (Ncgl0237,
Cgl0240) From Corynebacterium Glutamicum Atcc 13032
Kitasato At 1.25 A Resolution
pdb|3PPL|B Chain B, Crystal Structure Of An Aspartate Transaminase (Ncgl0237,
Cgl0240) From Corynebacterium Glutamicum Atcc 13032
Kitasato At 1.25 A Resolution
Length = 427
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 302 GELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKV-S 360
G+ ++D ++ AL KG + T+ + G + VDI+ I + G+PVE+V +
Sbjct: 41 GKPSSEQLDFADELLALPGKGDFKAADGTDVRNYGGLDGIVDIRQIWADLLGVPVEQVLA 100
Query: 361 TDESDRLLKMEETLHKRVIGQDEAVKAISR 390
D S + + + G +++V+ S+
Sbjct: 101 GDASSLNIXFDVISWSYIFGNNDSVQPWSK 130
>pdb|1D9X|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb
Length = 658
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 276 RELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQ 314
+E E+ +R + E EA + DFE+A +LRD +LKA+
Sbjct: 619 QEREELIRTLEAEMKEAAKALDFERAAQLRDIIFELKAE 657
>pdb|1D9Z|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb In
Complex With Atp
Length = 657
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 276 RELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQ 314
+E E+ +R + E EA + DFE+A +LRD +LKA+
Sbjct: 618 QEREELIRTLEAEMKEAAKALDFERAAQLRDIIFELKAE 656
>pdb|2FDC|A Chain A, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
pdb|2FDC|B Chain B, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
Length = 658
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 276 RELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQ 314
+E E+ +R + E EA + DFE+A +LRD +LKA+
Sbjct: 619 QEREELIRTLEAEMKEAAKALDFERAAQLRDIIFELKAE 657
>pdb|1T5L|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
pdb|1T5L|B Chain B, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
Length = 658
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 276 RELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQ 314
+E E+ +R + E EA + DFE+A +LRD +LKA+
Sbjct: 619 QEREELIRTLEAEMKEAAKALDFERAAQLRDIIFELKAE 657
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 12/76 (15%)
Query: 68 LIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLM 127
L G PG GKT +A +A ++ L++ +KY G+ E+ ++ L
Sbjct: 59 LFGPPGNGKTLLARAVATECSA------------TFLNISAASLTSKYVGDGEKLVRALF 106
Query: 128 EEIKQSDEIILFIDEV 143
+ I+FIDEV
Sbjct: 107 AVARHMQPSIIFIDEV 122
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 69/160 (43%), Gaps = 30/160 (18%)
Query: 68 LIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLM 127
L G PG GKT +A+ +A + + + G +++ K+ GE +K +
Sbjct: 56 LYGPPGTGKTLLAKAVATETNATFI--RVVGSELV----------KKFIGEGASLVKDIF 103
Query: 128 EEIKQSDEIILFIDEVHTLXXXXXXXXXXXXXXXLKPSL----------ARGELQCIGAT 177
+ K+ I+FIDE+ + + + ARG+++ IGAT
Sbjct: 104 KLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGAT 163
Query: 178 TLDEYRKHIEKDPALER--RF-QPVKVPEPSVDETIQILK 214
R I DPA+ R RF + ++VP P ++ILK
Sbjct: 164 N----RPDI-LDPAILRPGRFDRIIEVPAPDEKGRLEILK 198
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query: 68 LIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLM 127
L G PG GKT A +A R + + + G +++ KY GE +++L
Sbjct: 248 LYGPPGTGKTLCARAVANRTDATFI--RVIGSELV----------QKYVGEGARMVRELF 295
Query: 128 EEIKQSDEIILFIDEVHTL 146
E + I+F DE+ +
Sbjct: 296 EMARTKKACIIFFDEIDAV 314
>pdb|2Z83|A Chain A, Crystal Structure Of Catalytic Domain Of Japanese
Encephalitis Virus Ns3 HelicaseNUCLEOSIDE TRIPHOSPHATASE
At A Resolution 1.8
Length = 459
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Query: 370 MEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAY 429
+EE + ++G + + S A RR RVG +NPN+ + + G T S LA
Sbjct: 269 LEEGEGRVILGNPSPITSASAAQRRGRVG-RNPNQVGDEYHYGGATSEDDSNLAHWT--- 324
Query: 430 YFGSEEAMIRLDMSEFMERHTVSKLIG 456
EA I LD + M V++L G
Sbjct: 325 -----EAKIMLD-NIHMPNGLVAQLYG 345
>pdb|3CR8|A Chain A, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|B Chain B, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|C Chain C, Hexameric Aps Kinase From Thiobacillus Denitrificans
Length = 552
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 408 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 454
+ F+G +G GKS LA+ALAA + L + + RH S+L
Sbjct: 371 TVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSEL 417
>pdb|4FET|B Chain B, Catalytic Domain Of Germination-Specific Lytic
Tansglycosylase Sleb From Bacillus Anthracis
pdb|4FET|A Chain A, Catalytic Domain Of Germination-Specific Lytic
Tansglycosylase Sleb From Bacillus Anthracis
Length = 222
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 70 GEPGVGKTAIAEGLAQRIASGDVPDTIEG 98
GEP +G+ A+A + R+ S P+T+ G
Sbjct: 123 GEPYLGQVAVAAVILNRVTSASFPNTVSG 151
>pdb|4F55|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Bacillus Cereus Sleb Protein
Length = 128
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 70 GEPGVGKTAIAEGLAQRIASGDVPDTIEG 98
GEP +G+ A+A + R+ S P+T+ G
Sbjct: 29 GEPYLGQVAVAAVILNRVTSASFPNTVSG 57
>pdb|1SXJ|B Chain B, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 323
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 12/78 (15%)
Query: 21 KMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI--GEPGVGKTA 78
++P +E+Y + L +VG + I+R+ QI + N P +I G PG+GKT
Sbjct: 8 QLPWVEKYRPQV--------LSDIVGNKETIDRLQQI--AKDGNMPHMIISGMPGIGKTT 57
Query: 79 IAEGLAQRIASGDVPDTI 96
LA + D +
Sbjct: 58 SVHCLAHELLGRSYADGV 75
>pdb|3PPU|A Chain A, Crystal Structure Of The Glutathione-S-Transferase Xi From
Phanerochaete Chrysosporium
pdb|3PPU|B Chain B, Crystal Structure Of The Glutathione-S-Transferase Xi From
Phanerochaete Chrysosporium
Length = 352
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 464 YTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDG 505
Y GGQLTEA R T+V FD + H F L+ + DG
Sbjct: 257 YLIGGQLTEADIRLFVTIVRFDPVYVTH---FKCNLRTIRDG 295
>pdb|3PFI|A Chain A, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
pdb|3PFI|B Chain B, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
Length = 338
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 354 IPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSG 413
+ +EK S DE+ + + IGQ+ K ++ I A K N + +FSG
Sbjct: 8 VEIEKYSFDETYET-SLRPSNFDGYIGQESIKKNLNVFIAAA----KKRNECLDHILFSG 62
Query: 414 PTGVGKSELAKALA 427
P G+GK+ LA ++
Sbjct: 63 PAGLGKTTLANIIS 76
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 41 LDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTI 96
+D V+G++ +E V++ + K + LIGEPG GK+ + + +A+ + + + D +
Sbjct: 40 IDQVIGQEHAVE-VIKTAANQ-KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDIL 93
>pdb|1YKS|A Chain A, Crystal Structure Of Yellow Fever Virus Ns3 Helicase
Length = 440
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 385 VKAISRAIRRARVGLKNPNRPIASFIFSGPT 415
+ A S A RR R+G +NPNR S+ +S PT
Sbjct: 270 ISASSAAQRRGRIG-RNPNRDGDSYYYSEPT 299
>pdb|1YMF|A Chain A, Crystal Structure Of Yellow Fever Virus Ns3 Helicase
Complexed With Adp
Length = 440
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 385 VKAISRAIRRARVGLKNPNRPIASFIFSGPT 415
+ A S A RR R+G +NPNR S+ +S PT
Sbjct: 270 ISASSAAQRRGRIG-RNPNRDGDSYYYSEPT 299
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,288,462
Number of Sequences: 62578
Number of extensions: 737628
Number of successful extensions: 3062
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 2875
Number of HSP's gapped (non-prelim): 190
length of query: 693
length of database: 14,973,337
effective HSP length: 106
effective length of query: 587
effective length of database: 8,340,069
effective search space: 4895620503
effective search space used: 4895620503
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)