Query 005511
Match_columns 693
No_of_seqs 428 out of 3658
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 00:37:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005511.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005511hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0542 clpA ATP-binding subun 100.0 7.6E-96 2E-100 793.7 67.2 634 14-670 142-777 (786)
2 CHL00095 clpC Clp protease ATP 100.0 2E-84 4.3E-89 746.5 73.7 658 20-681 157-815 (821)
3 TIGR03345 VI_ClpV1 type VI sec 100.0 1.6E-80 3.6E-85 708.1 69.1 640 21-668 166-851 (852)
4 PRK11034 clpA ATP-dependent Cl 100.0 7.6E-79 1.6E-83 680.0 58.5 574 21-671 165-739 (758)
5 TIGR03346 chaperone_ClpB ATP-d 100.0 1.6E-77 3.5E-82 690.7 70.5 640 19-669 150-847 (852)
6 PRK10865 protein disaggregatio 100.0 1.1E-77 2.4E-82 687.7 66.0 644 20-675 156-855 (857)
7 TIGR02639 ClpA ATP-dependent C 100.0 1.8E-78 3.8E-83 690.0 58.2 570 21-667 161-731 (731)
8 KOG1051 Chaperone HSP104 and r 100.0 3.1E-65 6.8E-70 561.7 46.4 649 19-672 163-857 (898)
9 KOG0733 Nuclear AAA ATPase (VC 100.0 3E-52 6.4E-57 427.8 35.3 497 40-654 188-740 (802)
10 KOG0730 AAA+-type ATPase [Post 100.0 7.3E-46 1.6E-50 387.3 32.4 435 42-651 184-656 (693)
11 TIGR01243 CDC48 AAA family ATP 100.0 3.2E-39 6.9E-44 369.8 38.3 460 38-653 174-678 (733)
12 KOG0736 Peroxisome assembly fa 100.0 4.9E-39 1.1E-43 338.9 31.7 450 43-654 402-902 (953)
13 KOG0735 AAA+-type ATPase [Post 100.0 8.2E-36 1.8E-40 311.6 33.5 432 61-656 429-894 (952)
14 TIGR00382 clpX endopeptidase C 100.0 5.3E-31 1.2E-35 274.5 28.8 283 367-667 68-401 (413)
15 PRK05342 clpX ATP-dependent pr 100.0 1.1E-30 2.4E-35 274.5 26.4 273 367-653 62-384 (412)
16 KOG0741 AAA+-type ATPase [Post 100.0 2.7E-29 5.8E-34 254.9 24.6 409 44-595 223-683 (744)
17 COG0464 SpoVK ATPases of the A 100.0 1.7E-27 3.6E-32 262.7 34.8 426 54-652 9-467 (494)
18 COG1222 RPT1 ATP-dependent 26S 100.0 5.5E-28 1.2E-32 236.3 19.9 198 40-264 149-372 (406)
19 COG1219 ClpX ATP-dependent pro 100.0 3.4E-27 7.3E-32 226.2 22.7 286 365-667 50-384 (408)
20 COG2204 AtoC Response regulato 99.9 1.4E-25 3E-30 233.9 25.8 229 375-645 140-372 (464)
21 COG1223 Predicted ATPase (AAA+ 99.9 1.6E-25 3.5E-30 208.6 18.1 205 33-264 112-335 (368)
22 TIGR00763 lon ATP-dependent pr 99.9 3.3E-24 7.2E-29 246.3 32.7 298 342-690 287-597 (775)
23 CHL00195 ycf46 Ycf46; Provisio 99.9 8.7E-24 1.9E-28 226.5 32.7 335 135-647 82-444 (489)
24 KOG0730 AAA+-type ATPase [Post 99.9 2.4E-25 5.3E-30 233.9 20.1 202 37-266 429-654 (693)
25 KOG0745 Putative ATP-dependent 99.9 1.8E-24 4E-29 215.4 20.5 271 367-651 136-512 (564)
26 COG3604 FhlA Transcriptional r 99.9 7.4E-25 1.6E-29 223.5 17.1 229 376-647 223-456 (550)
27 COG3829 RocR Transcriptional r 99.9 1.1E-24 2.4E-29 225.7 17.6 230 374-645 243-477 (560)
28 PRK05201 hslU ATP-dependent pr 99.9 3.9E-24 8.5E-29 218.8 21.3 260 368-667 7-422 (443)
29 PRK10787 DNA-binding ATP-depen 99.9 8.7E-23 1.9E-27 231.6 33.2 265 342-656 289-564 (784)
30 KOG0738 AAA+-type ATPase [Post 99.9 5.1E-24 1.1E-28 209.7 17.0 232 40-303 210-467 (491)
31 COG0466 Lon ATP-dependent Lon 99.9 2E-22 4.3E-27 214.1 30.1 263 343-653 291-563 (782)
32 TIGR00390 hslU ATP-dependent p 99.9 2.2E-23 4.8E-28 213.2 21.1 259 368-667 4-420 (441)
33 KOG0733 Nuclear AAA ATPase (VC 99.9 7.2E-24 1.5E-28 219.3 16.1 198 40-263 509-732 (802)
34 PF05496 RuvB_N: Holliday junc 99.9 8.8E-24 1.9E-28 197.8 13.5 193 27-262 9-227 (233)
35 COG2256 MGS1 ATPase related to 99.9 1.8E-23 4E-28 208.3 16.0 199 30-264 12-220 (436)
36 KOG0734 AAA+-type ATPase conta 99.9 1.7E-23 3.7E-28 213.2 15.9 206 36-268 298-525 (752)
37 PF07724 AAA_2: AAA domain (Cd 99.9 6.5E-24 1.4E-28 197.2 11.4 155 404-579 1-171 (171)
38 KOG2004 Mitochondrial ATP-depe 99.9 2E-22 4.4E-27 212.3 23.7 255 344-647 380-645 (906)
39 COG1222 RPT1 ATP-dependent 26S 99.9 1.1E-22 2.3E-27 199.4 17.8 199 374-646 149-371 (406)
40 CHL00195 ycf46 Ycf46; Provisio 99.9 5.6E-22 1.2E-26 212.7 22.6 200 39-263 225-443 (489)
41 TIGR02974 phageshock_pspF psp 99.9 3.3E-22 7.2E-27 206.4 19.4 226 378-646 1-232 (329)
42 CHL00181 cbbX CbbX; Provisiona 99.9 5.8E-22 1.3E-26 200.3 20.0 224 365-653 12-260 (287)
43 KOG0736 Peroxisome assembly fa 99.9 8.3E-22 1.8E-26 209.3 20.9 202 40-267 670-898 (953)
44 KOG0989 Replication factor C, 99.9 7.2E-22 1.6E-26 189.7 16.1 207 28-262 22-236 (346)
45 PTZ00454 26S protease regulato 99.9 2.9E-21 6.3E-26 203.1 20.8 199 39-264 142-366 (398)
46 PRK03992 proteasome-activating 99.9 3.2E-21 6.9E-26 204.3 20.9 199 39-264 128-352 (389)
47 COG1223 Predicted ATPase (AAA+ 99.9 1.3E-21 2.8E-26 182.6 15.5 206 370-654 115-338 (368)
48 TIGR02880 cbbX_cfxQ probable R 99.9 5.7E-21 1.2E-25 193.5 21.5 222 366-652 12-258 (284)
49 KOG0739 AAA+-type ATPase [Post 99.9 6.2E-22 1.3E-26 188.2 12.9 187 39-246 130-337 (439)
50 KOG0737 AAA+-type ATPase [Post 99.9 1E-21 2.3E-26 193.9 14.3 196 40-263 90-310 (386)
51 COG1221 PspF Transcriptional r 99.9 2.4E-21 5.2E-26 198.7 16.8 229 371-647 73-309 (403)
52 PRK11608 pspF phage shock prot 99.9 7.2E-21 1.6E-25 196.9 20.6 230 375-645 5-238 (326)
53 PF05496 RuvB_N: Holliday junc 99.9 6.1E-21 1.3E-25 178.8 17.1 187 368-625 16-210 (233)
54 KOG0728 26S proteasome regulat 99.9 9.2E-21 2E-25 175.9 18.0 197 40-263 145-367 (404)
55 PTZ00361 26 proteosome regulat 99.9 7.7E-21 1.7E-25 200.8 19.6 204 33-264 174-404 (438)
56 KOG0652 26S proteasome regulat 99.9 5.7E-21 1.2E-25 178.3 16.0 202 40-268 169-396 (424)
57 TIGR01817 nifA Nif-specific re 99.9 6.6E-21 1.4E-25 211.7 19.7 229 374-645 194-426 (534)
58 KOG2028 ATPase related to the 99.9 6.7E-21 1.5E-25 185.9 16.9 206 31-269 127-349 (554)
59 PRK14956 DNA polymerase III su 99.9 1.1E-20 2.4E-25 198.7 19.4 202 30-262 6-228 (484)
60 PRK15424 propionate catabolism 99.9 1.4E-20 3E-25 204.0 20.3 227 375-645 218-463 (538)
61 COG2255 RuvB Holliday junction 99.9 2.4E-20 5.3E-25 177.3 19.3 193 30-265 14-232 (332)
62 TIGR01241 FtsH_fam ATP-depende 99.9 9E-21 1.9E-25 208.3 18.9 200 36-262 49-273 (495)
63 COG1220 HslU ATP-dependent pro 99.9 1.6E-20 3.6E-25 181.8 18.3 259 369-668 8-424 (444)
64 TIGR02329 propionate_PrpR prop 99.9 1.3E-20 2.8E-25 204.7 19.6 227 375-645 211-448 (526)
65 TIGR02881 spore_V_K stage V sp 99.9 2.3E-20 5E-25 188.0 19.6 217 41-269 5-243 (261)
66 PRK05022 anaerobic nitric oxid 99.9 3.5E-20 7.7E-25 203.8 21.7 230 375-646 186-419 (509)
67 KOG0735 AAA+-type ATPase [Post 99.8 1.5E-20 3.3E-25 197.8 16.8 196 40-262 665-883 (952)
68 PRK10820 DNA-binding transcrip 99.8 4.7E-20 1E-24 202.7 21.4 231 374-646 202-436 (520)
69 PRK07003 DNA polymerase III su 99.8 1.6E-19 3.5E-24 196.3 24.6 202 31-263 5-227 (830)
70 KOG0727 26S proteasome regulat 99.8 1.5E-20 3.3E-25 174.6 14.2 198 40-264 153-376 (408)
71 COG2256 MGS1 ATPase related to 99.8 7.9E-21 1.7E-25 189.6 13.2 189 371-641 19-214 (436)
72 KOG0734 AAA+-type ATPase conta 99.8 1.1E-20 2.4E-25 192.8 14.5 202 371-648 299-522 (752)
73 CHL00176 ftsH cell division pr 99.8 1E-19 2.2E-24 201.5 22.6 198 39-263 180-402 (638)
74 KOG0731 AAA+-type ATPase conta 99.8 3.8E-20 8.2E-25 201.4 18.5 200 39-264 308-533 (774)
75 TIGR01243 CDC48 AAA family ATP 99.8 7.5E-20 1.6E-24 210.3 22.1 199 40-266 451-674 (733)
76 COG0464 SpoVK ATPases of the A 99.8 1E-19 2.2E-24 200.8 21.1 204 39-267 239-465 (494)
77 COG3283 TyrR Transcriptional r 99.8 1.1E-19 2.4E-24 177.1 18.6 226 375-646 203-431 (511)
78 TIGR02881 spore_V_K stage V sp 99.8 9.8E-20 2.1E-24 183.5 18.6 213 377-654 7-245 (261)
79 PRK12323 DNA polymerase III su 99.8 6.2E-20 1.3E-24 197.2 17.9 202 30-262 4-231 (700)
80 KOG0740 AAA+-type ATPase [Post 99.8 5E-20 1.1E-24 189.3 15.8 202 35-262 146-369 (428)
81 PLN03025 replication factor C 99.8 9.2E-20 2E-24 189.2 17.5 193 31-259 2-203 (319)
82 KOG0732 AAA+-type ATPase conta 99.8 2.3E-20 5E-25 208.1 13.5 205 40-265 263-490 (1080)
83 CHL00181 cbbX CbbX; Provisiona 99.8 4.1E-19 8.9E-24 179.6 20.9 215 43-269 24-259 (287)
84 PLN00020 ribulose bisphosphate 99.8 1.3E-19 2.7E-24 181.3 16.8 158 59-240 144-328 (413)
85 PRK11388 DNA-binding transcrip 99.8 1.6E-19 3.5E-24 205.2 19.7 226 375-645 324-552 (638)
86 PRK13342 recombination factor 99.8 1.6E-19 3.5E-24 193.7 18.4 194 31-262 1-202 (413)
87 KOG0726 26S proteasome regulat 99.8 2.5E-20 5.5E-25 176.7 10.7 203 34-263 177-405 (440)
88 TIGR03689 pup_AAA proteasome A 99.8 2E-19 4.3E-24 192.5 18.8 179 33-218 173-379 (512)
89 PRK14949 DNA polymerase III su 99.8 2.5E-19 5.3E-24 198.7 19.8 202 30-262 4-226 (944)
90 PRK15429 formate hydrogenlyase 99.8 5E-19 1.1E-23 202.3 22.0 228 375-645 375-607 (686)
91 TIGR01242 26Sp45 26S proteasom 99.8 3.2E-19 6.9E-24 188.7 18.9 199 38-264 118-343 (364)
92 PRK14960 DNA polymerase III su 99.8 3.4E-19 7.4E-24 192.0 19.1 203 30-263 3-226 (702)
93 PRK14962 DNA polymerase III su 99.8 8.2E-19 1.8E-23 188.4 21.6 202 30-262 2-224 (472)
94 PRK00080 ruvB Holliday junctio 99.8 1.5E-18 3.3E-23 180.9 23.1 191 31-264 14-230 (328)
95 PRK07764 DNA polymerase III su 99.8 3.1E-18 6.7E-23 194.3 27.2 202 30-262 3-227 (824)
96 PF00158 Sigma54_activat: Sigm 99.8 2E-19 4.4E-24 166.6 14.3 163 378-578 1-164 (168)
97 PRK14964 DNA polymerase III su 99.8 1.3E-18 2.8E-23 185.7 21.8 202 31-263 2-224 (491)
98 PRK14958 DNA polymerase III su 99.8 8.2E-19 1.8E-23 190.5 19.9 203 30-263 4-227 (509)
99 KOG0729 26S proteasome regulat 99.8 2.3E-19 5E-24 168.1 13.1 198 40-264 175-398 (435)
100 PRK07994 DNA polymerase III su 99.8 7E-19 1.5E-23 193.0 18.5 202 30-262 4-226 (647)
101 KOG0738 AAA+-type ATPase [Post 99.8 6.3E-19 1.4E-23 174.0 16.1 209 375-653 211-438 (491)
102 TIGR02880 cbbX_cfxQ probable R 99.8 5.8E-18 1.3E-22 171.5 22.6 214 43-268 23-257 (284)
103 PRK14952 DNA polymerase III su 99.8 3E-18 6.5E-23 187.3 21.7 201 31-262 2-225 (584)
104 PRK10923 glnG nitrogen regulat 99.8 2.1E-18 4.5E-23 190.0 20.2 227 377-646 139-370 (469)
105 CHL00206 ycf2 Ycf2; Provisiona 99.8 1.4E-18 3E-23 202.1 19.2 185 57-268 1624-1861(2281)
106 PRK14961 DNA polymerase III su 99.8 4.2E-18 9E-23 179.4 21.3 203 30-263 4-227 (363)
107 KOG0991 Replication factor C, 99.8 3.2E-19 6.9E-24 164.1 10.6 211 20-262 5-220 (333)
108 PRK13341 recombination factor 99.8 1.8E-18 3.8E-23 194.1 18.2 201 30-262 16-223 (725)
109 PRK08691 DNA polymerase III su 99.8 6.3E-18 1.4E-22 184.3 21.8 203 30-263 4-227 (709)
110 PRK14951 DNA polymerase III su 99.8 5E-18 1.1E-22 186.1 21.2 203 30-263 4-232 (618)
111 KOG0989 Replication factor C, 99.8 2.3E-18 4.9E-23 165.8 15.5 190 369-641 29-229 (346)
112 COG0465 HflB ATP-dependent Zn 99.8 1.8E-18 3.9E-23 185.4 16.4 213 28-267 136-373 (596)
113 PRK14957 DNA polymerase III su 99.8 4.9E-18 1.1E-22 183.9 19.9 203 30-263 4-227 (546)
114 PRK06645 DNA polymerase III su 99.8 5.1E-18 1.1E-22 182.8 19.7 204 30-264 9-237 (507)
115 TIGR00635 ruvB Holliday juncti 99.8 1.7E-17 3.8E-22 172.0 22.8 182 39-263 1-208 (305)
116 PRK15115 response regulator Gl 99.8 5.1E-17 1.1E-21 177.8 27.3 227 377-645 135-365 (444)
117 PRK14956 DNA polymerase III su 99.8 2E-18 4.3E-23 181.8 15.4 191 369-625 11-211 (484)
118 TIGR02915 PEP_resp_reg putativ 99.8 8E-18 1.7E-22 184.2 20.4 227 377-645 140-370 (445)
119 COG2255 RuvB Holliday junction 99.8 7E-18 1.5E-22 160.7 17.0 185 370-625 20-212 (332)
120 TIGR02902 spore_lonB ATP-depen 99.8 4.7E-18 1E-22 186.7 17.9 228 14-264 32-312 (531)
121 PRK14959 DNA polymerase III su 99.8 9.8E-18 2.1E-22 182.3 20.0 201 30-261 4-225 (624)
122 PRK05896 DNA polymerase III su 99.8 1.4E-17 3E-22 180.2 20.2 202 30-262 4-226 (605)
123 PRK08451 DNA polymerase III su 99.8 2.4E-17 5.2E-22 177.5 21.7 204 30-264 2-226 (535)
124 COG5271 MDN1 AAA ATPase contai 99.8 4.2E-17 9.1E-22 182.6 22.6 150 408-599 1545-1704(4600)
125 PRK04195 replication factor C 99.8 5.5E-18 1.2E-22 185.4 15.2 193 30-259 2-205 (482)
126 PRK05563 DNA polymerase III su 99.8 4.1E-17 8.8E-22 179.9 22.0 203 30-263 4-227 (559)
127 TIGR02902 spore_lonB ATP-depen 99.8 1.3E-17 2.9E-22 183.1 17.9 217 371-645 60-310 (531)
128 PRK07003 DNA polymerase III su 99.8 9.1E-18 2E-22 182.8 15.9 192 368-625 8-209 (830)
129 KOG0727 26S proteasome regulat 99.8 1.5E-17 3.2E-22 154.9 15.0 163 375-598 154-339 (408)
130 PRK14969 DNA polymerase III su 99.8 1.7E-17 3.8E-22 181.5 18.2 203 30-263 4-227 (527)
131 PRK07133 DNA polymerase III su 99.8 3.3E-17 7.2E-22 180.7 20.0 202 30-262 6-225 (725)
132 PRK14963 DNA polymerase III su 99.8 3.5E-17 7.5E-22 177.4 19.5 202 30-262 2-223 (504)
133 PRK12323 DNA polymerase III su 99.8 6.5E-18 1.4E-22 181.8 13.5 193 368-625 8-214 (700)
134 TIGR01818 ntrC nitrogen regula 99.7 4.4E-17 9.6E-22 179.3 20.4 227 377-646 135-366 (463)
135 PRK10733 hflB ATP-dependent me 99.7 3.1E-17 6.7E-22 184.4 19.3 200 38-264 148-372 (644)
136 PRK09111 DNA polymerase III su 99.7 4.4E-17 9.5E-22 179.3 19.9 203 30-263 12-240 (598)
137 PLN00020 ribulose bisphosphate 99.7 5.9E-17 1.3E-21 162.2 18.9 159 406-629 148-330 (413)
138 PRK11361 acetoacetate metaboli 99.7 4.5E-17 9.8E-22 179.1 19.9 226 377-645 144-374 (457)
139 COG2812 DnaX DNA polymerase II 99.7 9.5E-18 2.1E-22 178.0 13.6 204 30-264 4-228 (515)
140 PRK14949 DNA polymerase III su 99.7 1.5E-17 3.3E-22 184.7 15.6 191 369-625 9-209 (944)
141 PRK12402 replication factor C 99.7 6.3E-17 1.4E-21 170.6 19.7 202 31-260 4-230 (337)
142 PHA02544 44 clamp loader, smal 99.7 4.6E-17 9.9E-22 169.8 17.9 187 29-242 8-201 (316)
143 PRK03992 proteasome-activating 99.7 3.8E-17 8.2E-22 173.3 17.5 201 375-648 130-353 (389)
144 PRK14965 DNA polymerase III su 99.7 5E-17 1.1E-21 180.1 19.1 204 30-264 4-228 (576)
145 COG5271 MDN1 AAA ATPase contai 99.7 2E-15 4.3E-20 169.5 30.4 199 15-243 836-1064(4600)
146 PTZ00454 26S protease regulato 99.7 7.7E-17 1.7E-21 169.7 18.4 198 375-648 144-367 (398)
147 KOG0651 26S proteasome regulat 99.7 1.7E-17 3.6E-22 159.5 11.9 185 37-243 127-337 (388)
148 PRK14953 DNA polymerase III su 99.7 1.2E-16 2.6E-21 172.6 19.9 202 30-262 4-226 (486)
149 PRK06305 DNA polymerase III su 99.7 3.8E-16 8.3E-21 167.9 23.2 201 30-261 5-227 (451)
150 KOG0728 26S proteasome regulat 99.7 2E-17 4.3E-22 153.8 11.4 166 373-599 144-332 (404)
151 PRK06647 DNA polymerase III su 99.7 1.4E-16 3E-21 174.8 19.7 202 30-262 4-226 (563)
152 PRK04132 replication factor C 99.7 1.8E-15 3.9E-20 170.4 28.8 146 408-625 566-720 (846)
153 PRK07994 DNA polymerase III su 99.7 3.8E-17 8.1E-22 179.5 14.8 191 369-625 9-209 (647)
154 KOG0739 AAA+-type ATPase [Post 99.7 1.7E-17 3.7E-22 158.1 10.3 203 375-648 132-351 (439)
155 PRK14954 DNA polymerase III su 99.7 6.5E-15 1.4E-19 162.4 31.5 202 31-263 5-235 (620)
156 TIGR03689 pup_AAA proteasome A 99.7 1.3E-16 2.8E-21 171.0 17.5 164 376-600 182-380 (512)
157 PRK14960 DNA polymerase III su 99.7 9E-17 1.9E-21 173.5 16.3 191 369-625 8-208 (702)
158 KOG0731 AAA+-type ATPase conta 99.7 1.2E-16 2.7E-21 174.2 17.4 165 373-601 308-498 (774)
159 KOG0742 AAA+-type ATPase [Post 99.7 8.7E-17 1.9E-21 159.5 14.3 181 23-221 331-532 (630)
160 PRK14958 DNA polymerase III su 99.7 7.4E-17 1.6E-21 175.3 15.1 192 368-625 8-209 (509)
161 PRK14964 DNA polymerase III su 99.7 7.2E-17 1.6E-21 172.3 14.4 206 369-643 6-221 (491)
162 TIGR01241 FtsH_fam ATP-depende 99.7 1.5E-16 3.3E-21 174.9 17.4 166 375-600 54-240 (495)
163 PRK14955 DNA polymerase III su 99.7 2.7E-16 5.8E-21 167.7 18.7 203 30-263 4-235 (397)
164 TIGR02397 dnaX_nterm DNA polym 99.7 3.7E-16 8E-21 165.9 19.7 202 30-262 2-224 (355)
165 KOG0729 26S proteasome regulat 99.7 4.8E-17 1E-21 152.6 11.0 161 375-596 176-359 (435)
166 PLN03025 replication factor C 99.7 1.2E-16 2.6E-21 165.9 15.2 175 370-625 7-189 (319)
167 COG2812 DnaX DNA polymerase II 99.7 4E-17 8.8E-22 173.3 11.8 210 368-645 8-226 (515)
168 PRK07764 DNA polymerase III su 99.7 1.2E-16 2.5E-21 181.6 16.0 207 368-644 7-226 (824)
169 PRK14957 DNA polymerase III su 99.7 9.8E-17 2.1E-21 173.8 14.8 206 369-642 9-223 (546)
170 CHL00176 ftsH cell division pr 99.7 2.9E-16 6.3E-21 174.2 18.5 166 375-600 182-368 (638)
171 PTZ00361 26 proteosome regulat 99.7 2E-16 4.4E-21 167.4 15.9 161 375-599 182-368 (438)
172 PRK00440 rfc replication facto 99.7 4.5E-16 9.8E-21 162.8 18.5 201 30-262 5-209 (319)
173 PRK14952 DNA polymerase III su 99.7 2.7E-16 5.8E-21 172.1 17.0 207 368-642 5-222 (584)
174 PRK14970 DNA polymerase III su 99.7 6E-16 1.3E-20 164.4 18.9 202 30-262 5-215 (367)
175 PRK14962 DNA polymerase III su 99.7 1.5E-16 3.2E-21 171.1 14.2 203 369-641 7-220 (472)
176 KOG2028 ATPase related to the 99.7 1.8E-16 3.9E-21 155.2 13.3 153 408-625 164-325 (554)
177 COG3284 AcoR Transcriptional a 99.7 1.6E-16 3.4E-21 168.6 13.6 219 379-644 316-537 (606)
178 PRK14948 DNA polymerase III su 99.7 8.4E-16 1.8E-20 170.5 20.0 200 30-260 4-226 (620)
179 PRK08084 DNA replication initi 99.7 9.4E-16 2E-20 151.5 18.2 188 40-259 20-212 (235)
180 PRK14951 DNA polymerase III su 99.7 2.6E-16 5.6E-21 172.7 15.1 191 369-625 9-214 (618)
181 KOG0652 26S proteasome regulat 99.7 3.6E-16 7.8E-21 146.4 13.7 164 375-599 170-356 (424)
182 KOG2170 ATPase of the AAA+ sup 99.7 3.3E-16 7.2E-21 150.5 13.7 236 366-625 72-318 (344)
183 PRK14961 DNA polymerase III su 99.7 4.6E-16 9.9E-21 164.0 15.9 204 369-641 9-222 (363)
184 PRK10365 transcriptional regul 99.7 9.4E-16 2E-20 167.9 19.1 226 378-645 141-370 (441)
185 TIGR00635 ruvB Holliday juncti 99.7 1.8E-15 3.9E-20 156.9 20.1 180 375-625 3-190 (305)
186 PRK00080 ruvB Holliday junctio 99.7 1.5E-15 3.2E-20 158.6 19.0 198 370-641 19-224 (328)
187 PRK14971 DNA polymerase III su 99.7 1.4E-15 3E-20 168.9 19.5 201 31-262 6-228 (614)
188 PRK07133 DNA polymerase III su 99.7 4.9E-16 1.1E-20 171.5 15.3 192 369-625 11-208 (725)
189 TIGR00763 lon ATP-dependent pr 99.7 6.6E-16 1.4E-20 178.0 16.8 183 43-245 321-539 (775)
190 PRK08691 DNA polymerase III su 99.7 2.7E-16 5.9E-21 171.6 12.8 207 369-643 9-224 (709)
191 PRK06645 DNA polymerase III su 99.7 6E-16 1.3E-20 166.8 15.2 206 369-643 14-233 (507)
192 PRK14950 DNA polymerase III su 99.7 4.2E-15 9.2E-20 165.8 22.3 201 30-261 4-226 (585)
193 KOG0737 AAA+-type ATPase [Post 99.7 6.6E-16 1.4E-20 153.1 13.7 181 405-655 126-319 (386)
194 PRK07940 DNA polymerase III su 99.7 6.4E-16 1.4E-20 162.3 14.3 171 375-595 4-186 (394)
195 TIGR01242 26Sp45 26S proteasom 99.7 1.2E-15 2.7E-20 161.4 16.6 207 373-648 119-344 (364)
196 PRK14969 DNA polymerase III su 99.7 5.2E-16 1.1E-20 169.9 14.1 192 369-625 9-209 (527)
197 PRK05563 DNA polymerase III su 99.7 1.4E-15 3E-20 167.9 17.5 204 369-641 9-222 (559)
198 PRK13342 recombination factor 99.7 1.3E-15 2.8E-20 163.6 16.8 188 370-643 6-200 (413)
199 PRK14959 DNA polymerase III su 99.7 8.4E-16 1.8E-20 167.3 15.1 190 369-625 9-209 (624)
200 PRK05896 DNA polymerase III su 99.7 6.3E-16 1.4E-20 167.4 13.8 192 369-625 9-209 (605)
201 PRK13341 recombination factor 99.7 1.4E-15 2.9E-20 171.0 17.0 190 373-644 25-222 (725)
202 PRK14965 DNA polymerase III su 99.7 9.7E-16 2.1E-20 169.9 15.6 191 369-625 9-209 (576)
203 KOG2035 Replication factor C, 99.7 5.9E-15 1.3E-19 139.9 18.4 207 32-262 3-234 (351)
204 TIGR02640 gas_vesic_GvpN gas v 99.7 8.3E-15 1.8E-19 147.3 20.9 150 408-597 23-197 (262)
205 PF00004 AAA: ATPase family as 99.7 8.7E-16 1.9E-20 138.2 12.3 120 66-202 1-131 (132)
206 PRK08451 DNA polymerase III su 99.7 3E-15 6.5E-20 161.4 18.0 191 369-625 7-207 (535)
207 CHL00206 ycf2 Ycf2; Provisiona 99.7 1E-15 2.3E-20 178.6 15.4 188 407-648 1631-1858(2281)
208 COG0466 Lon ATP-dependent Lon 99.6 1.8E-15 4E-20 161.5 15.8 199 43-261 324-558 (782)
209 PRK14963 DNA polymerase III su 99.6 3.2E-15 6.9E-20 162.2 17.9 204 369-642 7-220 (504)
210 PTZ00112 origin recognition co 99.6 6.5E-15 1.4E-19 161.0 19.6 210 41-263 754-988 (1164)
211 PRK09111 DNA polymerase III su 99.6 1.6E-15 3.5E-20 167.0 14.6 205 369-642 17-236 (598)
212 KOG0726 26S proteasome regulat 99.6 4.3E-16 9.3E-21 148.2 8.4 167 369-596 178-367 (440)
213 PRK14953 DNA polymerase III su 99.6 2.3E-15 5E-20 162.7 14.8 205 369-642 9-223 (486)
214 KOG0990 Replication factor C, 99.6 1.1E-14 2.5E-19 141.3 17.2 215 17-263 16-239 (360)
215 PRK06893 DNA replication initi 99.6 1.1E-14 2.4E-19 143.4 17.1 180 37-244 11-197 (229)
216 TIGR02903 spore_lon_C ATP-depe 99.6 1.4E-14 3E-19 161.7 20.0 211 30-263 142-401 (615)
217 KOG0742 AAA+-type ATPase [Post 99.6 5.9E-15 1.3E-19 146.7 15.0 166 376-603 355-533 (630)
218 PRK13531 regulatory ATPase Rav 99.6 8E-15 1.7E-19 154.0 16.7 207 365-625 9-235 (498)
219 PRK06305 DNA polymerase III su 99.6 6.4E-15 1.4E-19 158.5 16.4 189 370-625 11-211 (451)
220 PRK07940 DNA polymerase III su 99.6 6.3E-15 1.4E-19 154.9 15.8 176 40-244 3-207 (394)
221 COG1224 TIP49 DNA helicase TIP 99.6 2E-14 4.3E-19 141.1 17.9 113 479-645 292-406 (450)
222 PRK11034 clpA ATP-dependent Cl 99.6 6.7E-15 1.5E-19 166.2 16.7 233 2-262 426-717 (758)
223 TIGR02903 spore_lon_C ATP-depe 99.6 2.8E-14 6.1E-19 159.3 21.2 201 371-627 149-386 (615)
224 TIGR02928 orc1/cdc6 family rep 99.6 5.1E-14 1.1E-18 150.1 21.9 211 42-265 15-255 (365)
225 PRK06647 DNA polymerase III su 99.6 8.4E-15 1.8E-19 160.8 16.2 204 369-642 9-223 (563)
226 PRK14954 DNA polymerase III su 99.6 6.5E-15 1.4E-19 162.4 15.2 190 369-625 9-217 (620)
227 PRK14955 DNA polymerase III su 99.6 8E-15 1.7E-19 156.4 15.1 190 369-625 9-217 (397)
228 COG0465 HflB ATP-dependent Zn 99.6 7.5E-15 1.6E-19 157.8 14.7 164 375-599 149-334 (596)
229 PF01078 Mg_chelatase: Magnesi 99.6 4.8E-16 1E-20 145.4 4.6 182 375-589 2-206 (206)
230 PRK14948 DNA polymerase III su 99.6 8.1E-15 1.8E-19 162.7 15.1 205 369-641 9-224 (620)
231 COG0542 clpA ATP-binding subun 99.6 8.1E-15 1.7E-19 161.5 14.6 215 2-241 459-734 (786)
232 CHL00081 chlI Mg-protoporyphyr 99.6 1.2E-14 2.6E-19 149.0 14.9 232 375-655 16-306 (350)
233 KOG2004 Mitochondrial ATP-depe 99.6 1.1E-14 2.5E-19 154.4 15.0 183 43-245 412-630 (906)
234 PRK00411 cdc6 cell division co 99.6 1.7E-13 3.6E-18 147.7 24.5 208 41-264 29-262 (394)
235 PRK12402 replication factor C 99.6 1.7E-14 3.7E-19 152.1 16.4 202 369-641 8-228 (337)
236 PHA02544 44 clamp loader, smal 99.6 3.1E-14 6.7E-19 148.5 18.1 182 369-627 14-200 (316)
237 TIGR00390 hslU ATP-dependent p 99.6 2.4E-14 5.1E-19 147.3 16.6 108 134-242 247-380 (441)
238 PF06068 TIP49: TIP49 C-termin 99.6 1.8E-14 3.8E-19 144.3 15.1 110 479-641 279-390 (398)
239 COG4650 RtcR Sigma54-dependent 99.6 2.7E-15 5.9E-20 143.0 8.9 261 373-685 181-453 (531)
240 TIGR02397 dnaX_nterm DNA polym 99.6 3.2E-14 6.9E-19 151.1 18.1 203 369-642 7-221 (355)
241 PRK00149 dnaA chromosomal repl 99.6 7.2E-14 1.6E-18 152.0 20.7 201 40-263 120-329 (450)
242 KOG0740 AAA+-type ATPase [Post 99.6 9.8E-15 2.1E-19 150.5 13.0 205 372-648 149-372 (428)
243 PRK14086 dnaA chromosomal repl 99.6 8.4E-14 1.8E-18 151.0 20.4 187 40-243 286-481 (617)
244 PRK13407 bchI magnesium chelat 99.6 4.3E-14 9.3E-19 144.8 17.1 232 375-655 7-290 (334)
245 PRK05642 DNA replication initi 99.6 5.8E-14 1.2E-18 138.6 17.4 177 40-244 17-202 (234)
246 PRK04195 replication factor C 99.6 2E-14 4.4E-19 157.4 15.5 187 372-641 10-201 (482)
247 PRK05201 hslU ATP-dependent pr 99.6 3.6E-14 7.7E-19 146.1 15.8 108 134-242 249-382 (443)
248 PRK12422 chromosomal replicati 99.6 1.2E-13 2.6E-18 148.1 20.6 198 39-260 108-317 (445)
249 COG1474 CDC6 Cdc6-related prot 99.6 7.3E-13 1.6E-17 138.0 25.8 213 41-270 16-251 (366)
250 PRK05342 clpX ATP-dependent pr 99.6 1.1E-13 2.4E-18 146.2 19.7 186 44-240 73-357 (412)
251 TIGR00362 DnaA chromosomal rep 99.6 8.9E-14 1.9E-18 149.6 19.5 188 39-243 107-303 (405)
252 PRK08727 hypothetical protein; 99.6 1.1E-13 2.4E-18 136.5 18.5 188 40-260 17-208 (233)
253 TIGR02639 ClpA ATP-dependent C 99.6 3.8E-14 8.2E-19 162.7 17.2 180 375-625 181-380 (731)
254 PRK14950 DNA polymerase III su 99.6 2.3E-14 5E-19 159.9 14.9 206 368-642 8-224 (585)
255 PRK10733 hflB ATP-dependent me 99.6 2.6E-14 5.6E-19 160.8 15.0 162 375-600 151-337 (644)
256 TIGR03420 DnaA_homol_Hda DnaA 99.6 1.7E-13 3.7E-18 135.6 19.2 190 39-262 12-207 (226)
257 PRK14087 dnaA chromosomal repl 99.6 1.8E-13 3.8E-18 147.3 20.7 203 38-261 111-324 (450)
258 PRK14971 DNA polymerase III su 99.6 4E-14 8.6E-19 157.3 16.1 204 368-641 9-224 (614)
259 PRK14970 DNA polymerase III su 99.6 6E-14 1.3E-18 149.2 16.8 192 369-642 10-212 (367)
260 PRK14088 dnaA chromosomal repl 99.6 2.5E-13 5.5E-18 146.1 21.3 190 39-244 102-299 (440)
261 PF00004 AAA: ATPase family as 99.6 1.2E-14 2.6E-19 130.8 9.4 116 409-583 1-131 (132)
262 PHA02244 ATPase-like protein 99.6 6.2E-13 1.3E-17 135.1 22.4 171 376-590 96-266 (383)
263 PRK10787 DNA-binding ATP-depen 99.5 7.3E-14 1.6E-18 159.2 16.6 180 40-240 319-535 (784)
264 TIGR02442 Cob-chelat-sub cobal 99.5 1.1E-13 2.3E-18 155.8 17.7 203 375-628 3-264 (633)
265 PRK09112 DNA polymerase III su 99.5 2.6E-13 5.6E-18 140.9 19.1 200 36-260 17-244 (351)
266 TIGR02030 BchI-ChlI magnesium 99.5 6.4E-14 1.4E-18 143.9 14.3 232 375-655 3-293 (337)
267 PRK07399 DNA polymerase III su 99.5 6.4E-14 1.4E-18 143.4 14.2 167 374-597 2-194 (314)
268 PRK07471 DNA polymerase III su 99.5 1.8E-13 3.9E-18 142.8 17.7 196 36-258 13-240 (365)
269 TIGR01650 PD_CobS cobaltochela 99.5 2E-13 4.4E-18 137.5 17.1 158 408-597 66-232 (327)
270 PF00308 Bac_DnaA: Bacterial d 99.5 5.9E-14 1.3E-18 136.8 12.8 188 39-243 5-201 (219)
271 TIGR00602 rad24 checkpoint pro 99.5 8.8E-14 1.9E-18 153.2 15.6 223 29-262 71-329 (637)
272 TIGR03345 VI_ClpV1 type VI sec 99.5 1.7E-13 3.6E-18 158.2 18.3 182 373-625 184-385 (852)
273 TIGR02640 gas_vesic_GvpN gas v 99.5 2.2E-13 4.7E-18 137.0 16.8 163 49-242 9-214 (262)
274 COG0714 MoxR-like ATPases [Gen 99.5 8E-14 1.7E-18 145.5 14.1 171 367-589 15-193 (329)
275 CHL00081 chlI Mg-protoporyphyr 99.5 3.3E-13 7.2E-18 138.4 17.8 168 29-216 3-231 (350)
276 KOG0732 AAA+-type ATPase conta 99.5 1.3E-13 2.8E-18 154.9 15.7 207 374-648 263-490 (1080)
277 PF07728 AAA_5: AAA domain (dy 99.5 4.1E-14 8.8E-19 128.5 9.8 115 408-530 1-125 (139)
278 COG0606 Predicted ATPase with 99.5 1.1E-13 2.5E-18 142.5 13.6 183 375-589 178-383 (490)
279 KOG0991 Replication factor C, 99.5 8.5E-14 1.8E-18 128.6 11.3 177 367-624 18-202 (333)
280 PRK00440 rfc replication facto 99.5 3.3E-13 7.1E-18 141.2 17.1 175 370-625 11-192 (319)
281 PRK13407 bchI magnesium chelat 99.5 4.3E-13 9.3E-18 137.5 17.5 164 37-216 3-215 (334)
282 TIGR00368 Mg chelatase-related 99.5 6.4E-13 1.4E-17 143.7 19.4 242 375-652 191-482 (499)
283 PRK09112 DNA polymerase III su 99.5 2.1E-13 4.6E-18 141.5 15.0 166 375-596 22-211 (351)
284 TIGR03420 DnaA_homol_Hda DnaA 99.5 2.4E-13 5.3E-18 134.6 14.6 163 408-644 40-206 (226)
285 KOG0743 AAA+-type ATPase [Post 99.5 1.3E-13 2.8E-18 140.9 12.6 157 37-218 196-384 (457)
286 PF07726 AAA_3: ATPase family 99.5 1.6E-14 3.4E-19 123.5 4.4 106 408-528 1-112 (131)
287 PRK08903 DnaA regulatory inact 99.5 1.1E-12 2.3E-17 129.8 17.7 184 37-259 13-202 (227)
288 KOG0651 26S proteasome regulat 99.5 1.1E-13 2.3E-18 133.6 9.6 163 375-594 131-312 (388)
289 PRK07471 DNA polymerase III su 99.5 2.3E-13 4.9E-18 142.1 12.9 163 375-597 18-212 (365)
290 KOG0741 AAA+-type ATPase [Post 99.5 7.9E-14 1.7E-18 143.1 9.0 195 408-675 258-478 (744)
291 PRK08903 DnaA regulatory inact 99.5 9.1E-13 2E-17 130.3 16.4 159 408-644 44-204 (227)
292 CHL00095 clpC Clp protease ATP 99.5 5.5E-13 1.2E-17 154.9 17.1 214 2-240 477-760 (821)
293 PRK11331 5-methylcytosine-spec 99.5 2.4E-12 5.1E-17 134.5 19.2 233 375-654 174-443 (459)
294 PRK10865 protein disaggregatio 99.5 6.5E-13 1.4E-17 153.9 16.7 213 2-239 536-806 (857)
295 KOG1942 DNA helicase, TBP-inte 99.5 1.4E-12 3E-17 124.6 15.9 110 479-641 297-409 (456)
296 PF05621 TniB: Bacterial TniB 99.5 3.1E-12 6.8E-17 126.3 18.9 223 34-265 26-270 (302)
297 KOG0744 AAA+-type ATPase [Post 99.5 4.5E-13 9.7E-18 129.9 12.4 138 408-603 179-345 (423)
298 PRK06893 DNA replication initi 99.5 1.3E-12 2.8E-17 128.7 16.1 163 408-643 41-207 (229)
299 PF13177 DNA_pol3_delta2: DNA 99.5 2.6E-13 5.6E-18 125.7 10.5 151 380-586 1-162 (162)
300 TIGR00382 clpX endopeptidase C 99.5 2.6E-12 5.7E-17 134.8 19.0 186 44-240 79-363 (413)
301 PRK05564 DNA polymerase III su 99.5 6.9E-13 1.5E-17 137.5 14.6 158 375-597 3-164 (313)
302 KOG0744 AAA+-type ATPase [Post 99.5 3.2E-13 7E-18 130.9 11.1 171 42-220 142-343 (423)
303 PRK05564 DNA polymerase III su 99.5 1.3E-12 2.8E-17 135.5 16.5 174 40-242 2-182 (313)
304 PRK08058 DNA polymerase III su 99.5 4.9E-13 1.1E-17 138.8 12.7 166 375-596 4-180 (329)
305 COG0593 DnaA ATPase involved i 99.4 5.5E-12 1.2E-16 130.6 19.8 202 40-264 85-294 (408)
306 PRK06871 DNA polymerase III su 99.4 8.9E-13 1.9E-17 134.4 13.8 162 379-596 5-177 (325)
307 PRK08084 DNA replication initi 99.4 2.6E-12 5.7E-17 127.0 16.2 159 408-643 47-213 (235)
308 COG1224 TIP49 DNA helicase TIP 99.4 6.6E-12 1.4E-16 123.6 18.6 117 135-268 292-416 (450)
309 PF06068 TIP49: TIP49 C-termin 99.4 2.9E-12 6.4E-17 128.6 16.3 109 135-260 279-395 (398)
310 TIGR02030 BchI-ChlI magnesium 99.4 3.6E-12 7.8E-17 131.1 17.3 164 41-216 3-218 (337)
311 TIGR00678 holB DNA polymerase 99.4 2.9E-12 6.4E-17 122.6 15.7 155 407-625 15-180 (188)
312 PRK09087 hypothetical protein; 99.4 1E-11 2.3E-16 121.4 19.5 164 40-244 19-189 (226)
313 TIGR00764 lon_rel lon-related 99.4 2.1E-12 4.5E-17 143.8 16.2 116 472-625 211-342 (608)
314 TIGR02031 BchD-ChlD magnesium 99.4 1.6E-12 3.4E-17 144.6 15.0 205 406-654 16-241 (589)
315 TIGR03346 chaperone_ClpB ATP-d 99.4 2.8E-12 6E-17 149.4 17.7 212 3-239 534-803 (852)
316 PRK13765 ATP-dependent proteas 99.4 1.9E-12 4.2E-17 143.2 15.4 119 472-625 220-351 (637)
317 PRK08769 DNA polymerase III su 99.4 1.3E-12 2.8E-17 133.2 12.5 163 378-596 6-183 (319)
318 PRK07399 DNA polymerase III su 99.4 6E-12 1.3E-16 128.9 17.5 193 40-258 2-223 (314)
319 PRK06620 hypothetical protein; 99.4 3.6E-12 7.7E-17 123.5 14.7 169 40-259 14-192 (214)
320 PF14532 Sigma54_activ_2: Sigm 99.4 5.5E-13 1.2E-17 120.5 8.5 137 379-585 1-138 (138)
321 PF05673 DUF815: Protein of un 99.4 1.3E-11 2.9E-16 118.0 18.0 168 37-233 22-219 (249)
322 PRK06090 DNA polymerase III su 99.4 2.2E-12 4.7E-17 131.2 13.5 161 378-596 5-178 (319)
323 PTZ00111 DNA replication licen 99.4 9E-12 1.9E-16 139.8 19.3 198 367-598 441-657 (915)
324 KOG2035 Replication factor C, 99.4 4E-12 8.8E-17 120.9 13.6 195 375-641 12-227 (351)
325 PRK08727 hypothetical protein; 99.4 9.2E-12 2E-16 122.9 16.7 163 408-644 43-209 (233)
326 smart00350 MCM minichromosome 99.4 1.1E-11 2.5E-16 136.2 19.2 195 367-599 194-401 (509)
327 PRK05707 DNA polymerase III su 99.4 1.7E-12 3.7E-17 133.6 11.6 143 407-597 23-177 (328)
328 TIGR01650 PD_CobS cobaltochela 99.4 2.4E-12 5.3E-17 129.7 12.0 154 43-217 46-233 (327)
329 KOG1969 DNA replication checkp 99.4 2.4E-12 5.3E-17 137.5 12.4 191 31-260 260-514 (877)
330 PRK08058 DNA polymerase III su 99.4 6.9E-12 1.5E-16 130.2 15.2 155 40-214 3-179 (329)
331 PTZ00112 origin recognition co 99.4 9.6E-12 2.1E-16 136.6 16.7 209 375-641 754-980 (1164)
332 KOG0743 AAA+-type ATPase [Post 99.4 3.4E-12 7.3E-17 130.7 12.2 128 408-600 237-385 (457)
333 PRK07993 DNA polymerase III su 99.4 3.4E-12 7.3E-17 131.8 12.1 162 379-596 5-178 (334)
334 TIGR00678 holB DNA polymerase 99.4 1.2E-11 2.7E-16 118.3 14.9 162 53-244 3-185 (188)
335 TIGR02928 orc1/cdc6 family rep 99.4 2.4E-11 5.2E-16 129.5 18.6 197 376-625 15-232 (365)
336 COG1219 ClpX ATP-dependent pro 99.4 4.2E-11 9.1E-16 116.3 17.7 187 44-241 63-347 (408)
337 PRK06964 DNA polymerase III su 99.4 5.5E-12 1.2E-16 129.6 12.4 142 407-596 22-202 (342)
338 smart00763 AAA_PrkA PrkA AAA d 99.3 3.4E-11 7.4E-16 122.7 17.8 209 377-624 52-347 (361)
339 PRK05642 DNA replication initi 99.3 3E-11 6.5E-16 119.3 16.5 165 407-645 46-214 (234)
340 PRK00411 cdc6 cell division co 99.3 5E-11 1.1E-15 128.5 19.6 195 376-625 30-240 (394)
341 PRK13531 regulatory ATPase Rav 99.3 6.5E-11 1.4E-15 124.9 19.4 152 43-215 21-192 (498)
342 COG1239 ChlI Mg-chelatase subu 99.3 1E-11 2.3E-16 126.5 13.0 180 373-599 14-233 (423)
343 COG0470 HolB ATPase involved i 99.3 1.1E-11 2.5E-16 129.9 13.2 146 377-589 2-172 (325)
344 PRK09862 putative ATP-dependen 99.3 2.6E-11 5.6E-16 130.5 15.7 179 376-589 191-392 (506)
345 TIGR00362 DnaA chromosomal rep 99.3 1.4E-11 3.1E-16 132.5 13.6 174 407-645 137-316 (405)
346 PRK04132 replication factor C 99.3 2.4E-11 5.1E-16 137.5 15.6 162 65-262 566-737 (846)
347 PRK12422 chromosomal replicati 99.3 3.6E-11 7.8E-16 129.0 16.3 173 407-644 142-318 (445)
348 PF13177 DNA_pol3_delta2: DNA 99.3 2.2E-11 4.7E-16 112.8 12.6 142 46-205 1-162 (162)
349 COG0470 HolB ATPase involved i 99.3 3.7E-11 7.9E-16 126.1 15.8 152 42-210 1-174 (325)
350 PF01078 Mg_chelatase: Magnesi 99.3 2.1E-12 4.6E-17 121.0 5.3 130 40-182 1-161 (206)
351 TIGR02442 Cob-chelat-sub cobal 99.3 8.4E-11 1.8E-15 132.6 18.3 162 41-216 3-213 (633)
352 PF00308 Bac_DnaA: Bacterial d 99.3 3.2E-11 6.8E-16 117.6 12.7 173 408-645 36-214 (219)
353 PRK05707 DNA polymerase III su 99.3 1.1E-10 2.3E-15 120.4 16.8 162 56-243 14-196 (328)
354 PRK00149 dnaA chromosomal repl 99.3 5.3E-11 1.1E-15 129.7 15.2 174 407-645 149-328 (450)
355 PRK07993 DNA polymerase III su 99.3 1.5E-10 3.4E-15 119.5 17.6 169 48-243 8-197 (334)
356 cd00009 AAA The AAA+ (ATPases 99.3 5.7E-11 1.2E-15 108.8 12.5 150 380-584 2-151 (151)
357 COG5245 DYN1 Dynein, heavy cha 99.3 3.6E-10 7.8E-15 127.8 20.8 456 61-600 1492-2018(3164)
358 COG0714 MoxR-like ATPases [Gen 99.3 5.4E-11 1.2E-15 124.2 13.7 152 43-214 25-200 (329)
359 PRK08769 DNA polymerase III su 99.3 3.2E-10 6.8E-15 115.7 18.5 171 48-243 10-201 (319)
360 PHA02244 ATPase-like protein 99.2 4.9E-11 1.1E-15 121.4 11.9 143 44-208 98-265 (383)
361 PRK14088 dnaA chromosomal repl 99.2 1.2E-10 2.7E-15 125.4 15.7 174 408-645 132-311 (440)
362 KOG2680 DNA helicase TIP49, TB 99.2 2.4E-10 5.2E-15 109.8 15.2 110 479-641 289-400 (454)
363 COG1220 HslU ATP-dependent pro 99.2 1.5E-10 3.3E-15 113.3 14.0 106 135-241 251-382 (444)
364 TIGR02974 phageshock_pspF psp 99.2 2.2E-10 4.7E-15 118.7 16.2 172 44-238 1-212 (329)
365 PRK14086 dnaA chromosomal repl 99.2 1.5E-10 3.4E-15 125.9 15.6 173 408-645 316-494 (617)
366 PF05673 DUF815: Protein of un 99.2 5.6E-10 1.2E-14 106.9 17.4 181 376-600 27-209 (249)
367 KOG0745 Putative ATP-dependent 99.2 4.5E-10 9.7E-15 113.5 17.2 189 63-265 226-509 (564)
368 cd00009 AAA The AAA+ (ATPases 99.2 9.4E-11 2E-15 107.3 11.8 144 45-202 1-150 (151)
369 PRK08699 DNA polymerase III su 99.2 7.3E-11 1.6E-15 121.5 11.0 142 407-596 22-183 (325)
370 PRK11608 pspF phage shock prot 99.2 5.1E-10 1.1E-14 116.1 17.1 178 41-238 5-219 (326)
371 PRK14087 dnaA chromosomal repl 99.2 3.1E-10 6.6E-15 122.4 15.9 178 407-645 142-325 (450)
372 PRK07276 DNA polymerase III su 99.2 1.7E-10 3.7E-15 115.5 12.8 157 380-595 6-172 (290)
373 TIGR01817 nifA Nif-specific re 99.2 3.7E-10 8E-15 125.9 16.9 179 38-239 192-408 (534)
374 PRK06871 DNA polymerase III su 99.2 7.9E-10 1.7E-14 113.0 17.8 148 49-215 9-177 (325)
375 smart00350 MCM minichromosome 99.2 5.1E-10 1.1E-14 123.2 17.6 201 40-262 201-451 (509)
376 COG1474 CDC6 Cdc6-related prot 99.2 5.1E-10 1.1E-14 116.8 16.6 196 377-625 18-223 (366)
377 PRK05917 DNA polymerase III su 99.2 2E-10 4.4E-15 114.5 12.8 143 384-586 5-155 (290)
378 PRK06620 hypothetical protein; 99.2 3.7E-10 8.1E-15 109.5 14.2 145 407-642 45-192 (214)
379 COG3829 RocR Transcriptional r 99.2 9.5E-11 2.1E-15 122.8 10.6 158 39-216 242-429 (560)
380 COG2204 AtoC Response regulato 99.2 2.6E-10 5.6E-15 120.1 13.3 159 40-214 139-322 (464)
381 PRK15424 propionate catabolism 99.2 6.7E-10 1.5E-14 121.2 17.0 208 40-286 217-462 (538)
382 TIGR02329 propionate_PrpR prop 99.2 5.9E-10 1.3E-14 121.8 16.5 201 39-285 209-446 (526)
383 COG3604 FhlA Transcriptional r 99.2 1.2E-10 2.6E-15 120.3 10.2 182 40-238 221-435 (550)
384 COG2607 Predicted ATPase (AAA+ 99.1 9.3E-10 2E-14 103.1 14.6 167 40-235 58-253 (287)
385 PF07726 AAA_3: ATPase family 99.1 5.8E-12 1.3E-16 107.8 0.1 108 65-197 1-130 (131)
386 TIGR03015 pepcterm_ATPase puta 99.1 4.3E-09 9.2E-14 107.2 21.1 180 62-263 42-245 (269)
387 PRK06964 DNA polymerase III su 99.1 5.5E-10 1.2E-14 114.9 14.3 152 50-215 9-202 (342)
388 KOG1942 DNA helicase, TBP-inte 99.1 1.9E-09 4E-14 103.5 16.3 116 134-266 296-420 (456)
389 TIGR00764 lon_rel lon-related 99.1 1.4E-09 2.9E-14 121.4 17.9 123 133-266 216-373 (608)
390 PRK15429 formate hydrogenlyase 99.1 1.6E-09 3.4E-14 124.4 18.2 192 31-237 363-587 (686)
391 PRK11331 5-methylcytosine-spec 99.1 5.1E-10 1.1E-14 117.2 12.7 150 41-203 174-357 (459)
392 PRK06090 DNA polymerase III su 99.1 1.3E-09 2.8E-14 111.1 15.4 149 48-214 9-177 (319)
393 PF07724 AAA_2: AAA domain (Cd 99.1 8.2E-11 1.8E-15 109.5 6.0 109 62-181 2-131 (171)
394 KOG0990 Replication factor C, 99.1 2E-10 4.4E-15 112.1 8.7 157 373-599 38-204 (360)
395 PF10431 ClpB_D2-small: C-term 99.1 3.8E-10 8.3E-15 91.3 9.1 81 585-665 1-81 (81)
396 PRK09087 hypothetical protein; 99.1 1.7E-09 3.6E-14 105.9 15.3 152 408-643 46-199 (226)
397 PF01637 Arch_ATPase: Archaeal 99.1 1.7E-10 3.7E-15 114.7 8.1 190 44-243 1-227 (234)
398 PRK05022 anaerobic nitric oxid 99.1 2.5E-09 5.4E-14 118.2 17.6 176 40-238 185-399 (509)
399 PF07728 AAA_5: AAA domain (dy 99.1 3.8E-11 8.2E-16 108.9 2.3 111 65-196 1-139 (139)
400 PF00158 Sigma54_activat: Sigm 99.1 1.6E-09 3.6E-14 100.5 12.9 114 44-180 1-144 (168)
401 PTZ00111 DNA replication licen 99.1 7.8E-09 1.7E-13 116.6 19.7 164 40-218 448-658 (915)
402 TIGR02031 BchD-ChlD magnesium 99.1 3.3E-09 7.1E-14 118.3 16.7 187 61-269 14-243 (589)
403 TIGR00368 Mg chelatase-related 99.1 2.1E-09 4.5E-14 116.6 14.4 155 39-209 189-396 (499)
404 COG1221 PspF Transcriptional r 99.0 3E-09 6.5E-14 110.1 14.7 205 40-264 76-309 (403)
405 COG1239 ChlI Mg-chelatase subu 99.0 4.7E-09 1E-13 107.4 15.8 165 40-218 15-233 (423)
406 PRK11388 DNA-binding transcrip 99.0 2E-09 4.3E-14 122.9 14.7 177 39-238 322-533 (638)
407 PRK10820 DNA-binding transcrip 99.0 2.8E-09 6E-14 117.7 15.3 179 37-238 199-416 (520)
408 TIGR00602 rad24 checkpoint pro 99.0 3.8E-09 8.2E-14 116.9 16.2 224 368-642 76-323 (637)
409 PRK05818 DNA polymerase III su 99.0 1.5E-09 3.2E-14 105.8 11.3 129 406-585 7-147 (261)
410 COG0606 Predicted ATPase with 99.0 7.5E-10 1.6E-14 114.7 9.4 159 40-209 177-384 (490)
411 KOG1514 Origin recognition com 99.0 2.4E-08 5.2E-13 107.4 20.2 227 23-269 380-633 (767)
412 PF03215 Rad17: Rad17 cell cyc 99.0 5.4E-09 1.2E-13 113.7 15.1 214 29-262 6-269 (519)
413 COG2607 Predicted ATPase (AAA+ 99.0 1.6E-08 3.4E-13 95.0 15.2 178 376-601 60-242 (287)
414 KOG2227 Pre-initiation complex 99.0 3.8E-08 8.2E-13 101.1 19.1 210 40-265 148-380 (529)
415 COG1241 MCM2 Predicted ATPase 99.0 8.1E-09 1.8E-13 113.7 15.1 255 368-656 278-579 (682)
416 smart00763 AAA_PrkA PrkA AAA d 99.0 1.6E-08 3.6E-13 103.3 16.0 97 135-240 237-349 (361)
417 PRK13406 bchD magnesium chelat 99.0 4.5E-09 9.8E-14 115.9 12.9 175 406-625 25-207 (584)
418 KOG1969 DNA replication checkp 99.0 1.6E-08 3.5E-13 108.8 16.4 166 407-644 327-512 (877)
419 KOG2680 DNA helicase TIP49, TB 99.0 3.4E-08 7.3E-13 95.3 16.8 116 135-267 289-412 (454)
420 PRK07132 DNA polymerase III su 99.0 1.8E-08 3.8E-13 102.1 15.7 152 383-596 3-160 (299)
421 KOG1051 Chaperone HSP104 and r 98.9 4.2E-09 9.1E-14 118.5 11.8 155 1-180 529-711 (898)
422 PRK08699 DNA polymerase III su 98.9 1.6E-08 3.5E-13 104.2 14.8 150 51-214 10-182 (325)
423 PF12775 AAA_7: P-loop contain 98.9 4.5E-09 9.7E-14 105.7 10.3 147 54-220 25-196 (272)
424 PRK09862 putative ATP-dependen 98.9 1.9E-08 4.1E-13 108.6 15.2 159 39-208 188-392 (506)
425 PRK08116 hypothetical protein; 98.9 2.2E-08 4.8E-13 100.7 14.2 107 408-532 116-224 (268)
426 PRK15455 PrkA family serine pr 98.9 2.5E-08 5.5E-13 106.6 15.0 192 374-600 74-348 (644)
427 PF06309 Torsin: Torsin; Inte 98.9 3.9E-09 8.4E-14 90.4 7.3 73 366-440 15-89 (127)
428 PRK12377 putative replication 98.9 4.3E-09 9.4E-14 103.7 8.7 144 36-196 68-222 (248)
429 TIGR03015 pepcterm_ATPase puta 98.9 1.3E-07 2.8E-12 96.3 19.4 171 408-625 45-227 (269)
430 PRK13765 ATP-dependent proteas 98.9 1.9E-08 4E-13 111.9 14.1 124 133-267 225-383 (637)
431 smart00382 AAA ATPases associa 98.9 1.2E-08 2.7E-13 92.4 10.6 126 63-203 2-146 (148)
432 PRK12377 putative replication 98.9 1E-08 2.2E-13 101.1 10.3 104 408-531 103-208 (248)
433 PRK08116 hypothetical protein; 98.9 2E-08 4.3E-13 101.0 12.5 169 33-215 76-258 (268)
434 PRK05917 DNA polymerase III su 98.8 7.1E-08 1.5E-12 96.4 15.3 157 50-243 5-174 (290)
435 COG0593 DnaA ATPase involved i 98.8 2.7E-08 5.8E-13 103.5 12.6 171 406-646 113-293 (408)
436 KOG0478 DNA replication licens 98.8 2.9E-08 6.4E-13 106.0 13.0 221 370-625 423-672 (804)
437 PRK07952 DNA replication prote 98.8 1.2E-08 2.6E-13 100.2 9.5 147 33-196 63-221 (244)
438 KOG0480 DNA replication licens 98.8 1.7E-07 3.6E-12 99.5 18.4 252 367-653 336-627 (764)
439 KOG1970 Checkpoint RAD17-RFC c 98.8 1.2E-07 2.6E-12 99.3 16.4 202 29-244 69-309 (634)
440 smart00382 AAA ATPases associa 98.8 2.4E-08 5.1E-13 90.5 10.2 118 408-528 4-125 (148)
441 TIGR02915 PEP_resp_reg putativ 98.8 6.4E-08 1.4E-12 106.1 14.4 176 40-238 137-351 (445)
442 PRK08181 transposase; Validate 98.8 2.4E-08 5.2E-13 99.7 9.9 132 61-206 104-244 (269)
443 PF00493 MCM: MCM2/3/5 family 98.8 5.8E-09 1.3E-13 108.3 5.3 251 370-655 18-312 (331)
444 PF13173 AAA_14: AAA domain 98.8 2.6E-08 5.6E-13 88.7 8.4 124 64-209 3-127 (128)
445 PF12774 AAA_6: Hydrolytic ATP 98.8 2.4E-07 5.3E-12 90.4 15.9 133 408-594 34-176 (231)
446 PF14532 Sigma54_activ_2: Sigm 98.7 7.6E-09 1.6E-13 93.5 4.5 129 45-204 1-136 (138)
447 PRK10923 glnG nitrogen regulat 98.7 2.8E-07 6.1E-12 101.7 17.8 176 40-238 136-350 (469)
448 PRK07132 DNA polymerase III su 98.7 3.9E-07 8.4E-12 92.5 16.6 165 48-242 2-177 (299)
449 PRK07276 DNA polymerase III su 98.7 2.2E-07 4.7E-12 93.3 13.8 146 46-214 6-172 (290)
450 PF12775 AAA_7: P-loop contain 98.7 9.1E-08 2E-12 96.2 10.8 199 408-645 35-253 (272)
451 KOG1808 AAA ATPase containing 98.7 5.1E-07 1.1E-11 108.3 18.6 135 61-215 438-597 (1856)
452 KOG3595 Dyneins, heavy chain [ 98.7 2E-06 4.3E-11 105.4 24.1 141 64-220 128-289 (1395)
453 PF13401 AAA_22: AAA domain; P 98.7 1.6E-07 3.5E-12 84.0 10.5 109 62-179 3-125 (131)
454 KOG2227 Pre-initiation complex 98.7 3.1E-07 6.8E-12 94.6 13.4 216 375-644 149-376 (529)
455 COG1484 DnaC DNA replication p 98.6 1E-07 2.2E-12 94.9 8.9 115 49-179 90-208 (254)
456 PRK06526 transposase; Provisio 98.6 5.7E-08 1.2E-12 96.6 6.9 128 61-207 96-237 (254)
457 PRK13406 bchD magnesium chelat 98.6 5E-07 1.1E-11 99.9 14.8 195 48-270 9-236 (584)
458 TIGR01818 ntrC nitrogen regula 98.6 2.6E-07 5.7E-12 101.9 12.8 184 41-239 133-347 (463)
459 PF01695 IstB_IS21: IstB-like 98.6 2.6E-08 5.7E-13 93.6 4.0 115 49-180 33-150 (178)
460 PRK11361 acetoacetate metaboli 98.6 4.4E-07 9.6E-12 99.9 14.3 176 40-238 141-355 (457)
461 COG1241 MCM2 Predicted ATPase 98.6 4.9E-07 1.1E-11 99.9 14.3 157 40-219 284-485 (682)
462 PF13173 AAA_14: AAA domain 98.6 1.8E-07 3.9E-12 83.3 9.0 121 408-590 4-127 (128)
463 PRK06581 DNA polymerase III su 98.6 6E-07 1.3E-11 85.5 12.8 135 407-598 16-161 (263)
464 PRK08939 primosomal protein Dn 98.6 8.5E-08 1.8E-12 98.0 7.3 128 38-180 123-261 (306)
465 PRK15115 response regulator Gl 98.6 5.8E-07 1.3E-11 98.6 14.4 174 43-239 135-347 (444)
466 PRK06921 hypothetical protein; 98.6 2.8E-07 6.1E-12 92.5 10.7 122 62-196 116-240 (266)
467 PRK06835 DNA replication prote 98.6 2.7E-07 5.9E-12 95.0 10.7 128 62-205 182-318 (329)
468 PRK08181 transposase; Validate 98.6 2E-07 4.3E-12 93.1 9.1 105 408-534 108-214 (269)
469 PRK06526 transposase; Provisio 98.6 7.8E-08 1.7E-12 95.6 5.7 103 408-533 100-205 (254)
470 KOG0478 DNA replication licens 98.6 4E-06 8.6E-11 90.1 18.7 163 42-219 429-628 (804)
471 PF01695 IstB_IS21: IstB-like 98.6 1E-07 2.2E-12 89.7 6.1 105 408-534 49-155 (178)
472 PRK07952 DNA replication prote 98.5 3.9E-07 8.5E-12 89.7 10.3 107 408-533 101-209 (244)
473 PRK06835 DNA replication prote 98.5 2.1E-07 4.6E-12 95.8 8.8 107 407-532 184-292 (329)
474 PF01637 Arch_ATPase: Archaeal 98.5 5.5E-07 1.2E-11 89.4 11.2 191 378-625 1-223 (234)
475 PF05729 NACHT: NACHT domain 98.5 1.6E-06 3.5E-11 80.9 13.6 145 65-218 2-164 (166)
476 PF12780 AAA_8: P-loop contain 98.5 6.8E-07 1.5E-11 89.3 11.3 184 378-601 10-213 (268)
477 PRK09183 transposase/IS protei 98.5 2.9E-07 6.4E-12 92.1 8.3 119 49-180 88-206 (259)
478 PF03215 Rad17: Rad17 cell cyc 98.5 6.1E-06 1.3E-10 90.1 18.9 72 567-646 194-267 (519)
479 PRK05818 DNA polymerase III su 98.5 2E-06 4.3E-11 84.2 12.9 125 61-205 5-148 (261)
480 COG1484 DnaC DNA replication p 98.5 7.5E-07 1.6E-11 88.7 9.7 105 408-533 107-213 (254)
481 PHA00729 NTP-binding motif con 98.4 8.4E-07 1.8E-11 85.2 9.1 126 53-215 7-138 (226)
482 PRK08939 primosomal protein Dn 98.4 9.4E-07 2E-11 90.4 9.9 106 408-534 158-266 (306)
483 PF13401 AAA_22: AAA domain; P 98.4 3.6E-07 7.8E-12 81.8 6.0 97 408-505 6-115 (131)
484 PF05621 TniB: Bacterial TniB 98.4 3.3E-05 7.2E-10 77.0 20.0 215 372-643 30-265 (302)
485 PF00931 NB-ARC: NB-ARC domain 98.4 7.2E-06 1.6E-10 84.3 15.7 174 47-243 1-195 (287)
486 PF08298 AAA_PrkA: PrkA AAA do 98.4 4.2E-06 9.2E-11 84.8 13.2 208 376-624 61-344 (358)
487 PF13191 AAA_16: AAA ATPase do 98.4 6.7E-07 1.5E-11 85.3 7.1 47 43-89 1-50 (185)
488 PRK09183 transposase/IS protei 98.4 6.1E-07 1.3E-11 89.8 6.6 103 408-533 104-210 (259)
489 PF12774 AAA_6: Hydrolytic ATP 98.4 9.6E-07 2.1E-11 86.2 7.5 123 63-213 32-176 (231)
490 PF05729 NACHT: NACHT domain 98.4 2.9E-06 6.4E-11 79.2 10.6 144 408-599 2-164 (166)
491 KOG0477 DNA replication licens 98.4 1.3E-05 2.9E-10 85.0 16.2 147 43-198 450-625 (854)
492 PF00493 MCM: MCM2/3/5 family 98.3 1.7E-07 3.7E-12 97.4 2.2 155 42-219 24-223 (331)
493 KOG0482 DNA replication licens 98.3 1.7E-05 3.7E-10 82.3 16.4 161 34-217 334-539 (721)
494 COG1618 Predicted nucleotide k 98.3 1.1E-05 2.4E-10 71.5 13.0 143 62-219 4-174 (179)
495 PRK06921 hypothetical protein; 98.3 7.9E-07 1.7E-11 89.3 6.8 103 408-533 119-229 (266)
496 PRK10365 transcriptional regul 98.3 1E-05 2.2E-10 88.7 15.2 174 43-239 140-352 (441)
497 KOG2228 Origin recognition com 98.3 7.3E-06 1.6E-10 81.2 12.0 176 25-217 8-219 (408)
498 KOG1514 Origin recognition com 98.3 1.5E-05 3.2E-10 86.4 15.0 217 375-647 395-628 (767)
499 PF00910 RNA_helicase: RNA hel 98.3 1.8E-06 3.9E-11 74.0 6.6 98 409-527 1-106 (107)
500 PRK06851 hypothetical protein; 98.3 4E-05 8.6E-10 79.6 17.0 39 408-446 216-254 (367)
No 1
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-96 Score=793.70 Aligned_cols=634 Identities=61% Similarity=0.977 Sum_probs=586.6
Q ss_pred CCCCCCCCCccHHHHHhhhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCC
Q 005511 14 GGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVP 93 (693)
Q Consensus 14 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~ 93 (693)
.+..+....+.|++|+.++++.+|.+.+|++|||+++++++.++|.+..++|.+|+|+||+|||.++..+|+++.++.+|
T Consensus 142 ~~~~~~~~~~~L~~y~~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP 221 (786)
T COG0542 142 DSKNAEEDQDALEKYTRDLTELAREGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVP 221 (786)
T ss_pred CCcccccchhhHHHHhhhhHHHHhcCCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCC
Confidence 33444555688999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEEeccccccCCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCC-hHhHHHHHhhhhcCCCcE
Q 005511 94 DTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEG-AIDAANILKPSLARGELQ 172 (693)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~-~~~~~~~L~~~l~~~~v~ 172 (693)
..+.+.+++.++++.+.+|++|+|+++++++.+++.+.+..+.||||||+|.+.+.+...+ +.++.|+|++.|.+|++.
T Consensus 222 ~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~ 301 (786)
T COG0542 222 ESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELR 301 (786)
T ss_pred HHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeE
Confidence 9999999999999999999999999999999999999988899999999999999887766 588999999999999999
Q ss_pred EEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchh
Q 005511 173 CIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDK 252 (693)
Q Consensus 173 vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 252 (693)
+|++|+..+|.+++.-|++|.|||+.|.+..|+.++...||+.+.++|+.+|++.|+++++.+++.++.+|+.++++|++
T Consensus 302 ~IGATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDK 381 (786)
T COG0542 302 CIGATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDK 381 (786)
T ss_pred EEEeccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHhhHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHhcCcchHHHhhhHHHHHHHHH-HHHHHHhhhhhhhHhhhh
Q 005511 253 AIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKA-QISALVDKGKEMSKAETE 331 (693)
Q Consensus 253 ~~~ll~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 331 (693)
|++++++|+++.++... .|.+++.++..+.++..+.+...+.+| +.+.........++. .+.... ++..
T Consensus 382 AIDLiDeA~a~~~l~~~-~p~~l~~~~~~~~~l~~e~~~~~~e~~-~~~k~~~~~~~~~~~~~~~~~~---~~~~----- 451 (786)
T COG0542 382 AIDLLDEAGARVRLEID-KPEELDELERELAQLEIEKEALEREQD-EKEKKLIDEIIKLKEGRIPELE---KELE----- 451 (786)
T ss_pred HHHHHHHHHHHHHhccc-CCcchhHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHhhhhhhhHH---HHHh-----
Confidence 99999999999999888 999999999999999999988888887 333333333333332 111111 1110
Q ss_pred cCCCCCccCHhHHHHHHHHHhCCCccCCCcchhHHHHHHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEE
Q 005511 332 AGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIF 411 (693)
Q Consensus 332 ~~~~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl 411 (693)
. .|+.++|..+++.|+|+|..++...+.+.+.++++.|.+.|+||+.+++.+.+++++.+.|+..|++|.+++||
T Consensus 452 ----~-~v~~~~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF 526 (786)
T COG0542 452 ----A-EVDEDDIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLF 526 (786)
T ss_pred ----h-ccCHHHHHHHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEe
Confidence 1 19999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCCcCcCccchhhHHHHcCCCEEEEEccCcccC
Q 005511 412 SGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAH 491 (693)
Q Consensus 412 ~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~ 491 (693)
.||+|+|||.+|++||..+|+...+++++|||+|.+++++++|+|+|+||||+.+++.|+++++..|++||+||||+|++
T Consensus 527 ~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAH 606 (786)
T COG0542 527 LGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAH 606 (786)
T ss_pred eCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchh
Q 005511 492 PDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPE 571 (693)
Q Consensus 492 ~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 571 (693)
|+++|.||++|++|++++..|+++++.|++||+|||.|+..+..... + .....+..++..+...+++.|+|+
T Consensus 607 pdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~---~-----~~~~~~~~~~~~v~~~l~~~F~PE 678 (786)
T COG0542 607 PDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDAD---G-----DDFADKEALKEAVMEELKKHFRPE 678 (786)
T ss_pred HHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhcc---c-----cccchhhhHHHHHHHHHHhhCCHH
Confidence 99999999999999999999999999999999999999987764411 1 112335567778889999999999
Q ss_pred HhhccCcEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHHHHHHHHHHH
Q 005511 572 FLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEK 651 (693)
Q Consensus 572 l~~R~~~~v~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~~~l~~~ 651 (693)
|++|+|.+|+|.||+.+++.+|++..|.++..++..+++.+++++++.++|++.+|.+.||+|+|++.|++.+..+|++.
T Consensus 679 FLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~~ 758 (786)
T COG0542 679 FLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLADE 758 (786)
T ss_pred HHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred HHhcccCCCCEEEEEEcCC
Q 005511 652 MLAREIKEGDSVIVDVDSD 670 (693)
Q Consensus 652 ~l~~~~~~~~~~~v~~~~~ 670 (693)
+|.+.+.+|..|.|+++.+
T Consensus 759 iL~g~~~~~~~v~v~~~~~ 777 (786)
T COG0542 759 ILFGKIEDGGTVKVDVDDE 777 (786)
T ss_pred HHhcccCCCcEEEEEecCc
Confidence 9999999999999999983
No 2
>CHL00095 clpC Clp protease ATP binding subunit
Probab=100.00 E-value=2e-84 Score=746.49 Aligned_cols=658 Identities=72% Similarity=1.112 Sum_probs=607.9
Q ss_pred CCCccHHHHHhhhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCc
Q 005511 20 NKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGK 99 (693)
Q Consensus 20 ~~~~~l~~~~~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~ 99 (693)
.+.+.|++|+.+|+++++.+.+++++|++++++++.++|.+..++|++|+||||||||++|+.+|+.+..+.+|..+.+.
T Consensus 157 ~~~~~l~~~~~~l~~~a~~~~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~ 236 (821)
T CHL00095 157 SKTPTLEEFGTNLTKEAIDGNLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDK 236 (821)
T ss_pred ccchHHHHHHHHHHHHHHcCCCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCC
Confidence 44679999999999999999999999999999999999999999999999999999999999999999888889888999
Q ss_pred eEEEEeccccccCCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCCcEEEEEech
Q 005511 100 KVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTL 179 (693)
Q Consensus 100 ~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~t~~ 179 (693)
+++.++++.+.++.++.|+++.+++.+++.+....++||||||+|.++..+...+..+..+.|++.+.++++.+|++|+.
T Consensus 237 ~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt~ 316 (821)
T CHL00095 237 LVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTL 316 (821)
T ss_pred eEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCCH
Confidence 99999999999899999999999999999998888899999999999987766666678999999999999999999999
Q ss_pred HHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhhhhHHHH
Q 005511 180 DEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDE 259 (693)
Q Consensus 180 ~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~ 259 (693)
.+|...+..++++.+||..|.++.|+.++...|++.+...+...+++.++++++..++.++.+|++++++|+++++++++
T Consensus 317 ~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~ 396 (821)
T CHL00095 317 DEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDE 396 (821)
T ss_pred HHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHHH
Confidence 99988888999999999999999999999999999998888888888999999999999999999999999999999999
Q ss_pred HhhHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHhcCcchHHHhhhHHHHHHHHHHHHHHHhhhhhhhHhhhhcCCCCCcc
Q 005511 260 AGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVV 339 (693)
Q Consensus 260 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 339 (693)
|++..++.....|.....++..+..+..+.+......+++.+..+......+..++..+...|..... .......|
T Consensus 397 a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v 472 (821)
T CHL00095 397 AGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDFETAKQLRDREMEVRAQIAAIIQSKKTEEE----KRLEVPVV 472 (821)
T ss_pred HHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----ccccCCcc
Confidence 99999988878888899999999999999999988899988887777666777777776666654321 12234679
Q ss_pred CHhHHHHHHHHHhCCCccCCCcchhHHHHHHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcH
Q 005511 340 TEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGK 419 (693)
Q Consensus 340 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGK 419 (693)
+.++|..+++.|+|+|...+..++...+..+++.|.+.|+||+.+++.+..++.+.+.++..|.+|.+++||+|||||||
T Consensus 473 ~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGK 552 (821)
T CHL00095 473 TEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGK 552 (821)
T ss_pred CHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCCcCcCccchhhHHHHcCCCEEEEEccCcccCHHHHHHHH
Q 005511 420 SELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMML 499 (693)
Q Consensus 420 t~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll 499 (693)
|++|++||+.+++...+++.+|++++.+.++.+.++|+++||+|+.+.+.+.+.++..+++||+|||+|++++++++.|+
T Consensus 553 t~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Ll 632 (821)
T CHL00095 553 TELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLL 632 (821)
T ss_pred HHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHH
Confidence 99999999999998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCc-ccchHHHHHHHHHHHHhhcCchhHhhccCc
Q 005511 500 QILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDE-KDSSYNRIKSLVTEELKQYFRPEFLNRLDE 578 (693)
Q Consensus 500 ~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~-~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~ 578 (693)
++|++|.+++..|+.+++.|++||+|||.+...+.....++||...... .+..+..++..+.+.+.++|+|+|++|+|.
T Consensus 633 q~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ 712 (821)
T CHL00095 633 QILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDE 712 (821)
T ss_pred HHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCe
Confidence 9999999999999999999999999999999888766677888654322 233567788888899999999999999999
Q ss_pred EEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHHHHHHHHHHHHHhcccC
Q 005511 579 MIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIK 658 (693)
Q Consensus 579 ~v~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~~~l~~~~l~~~~~ 658 (693)
+|+|.||+.+++.+|++..+.++.+++...++.+.+++++.++|++.+|++.+|+|+|++.|++.+..++++.++.+.+.
T Consensus 713 ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~~~l~~~~~ 792 (821)
T CHL00095 713 IIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAEEVLSFKIK 792 (821)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHhCccC
Confidence 99999999999999999999999888888899999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEcCCCcEEEEeCCCC
Q 005511 659 EGDSVIVDVDSDGNVTVLNGSSG 681 (693)
Q Consensus 659 ~~~~~~v~~~~~~~~~~~~~~~~ 681 (693)
+|.++.|+++++|++.+.-.+..
T Consensus 793 ~g~~v~~~~~~~~~~~~~~~~~~ 815 (821)
T CHL00095 793 PGDIIIVDVNDEKEVKILLINKD 815 (821)
T ss_pred CCCEEEEEEeCCCcEEEEecccc
Confidence 99999999999999988766543
No 3
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=100.00 E-value=1.6e-80 Score=708.10 Aligned_cols=640 Identities=44% Similarity=0.714 Sum_probs=561.4
Q ss_pred CCccHHHHHhhhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCce
Q 005511 21 KMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKK 100 (693)
Q Consensus 21 ~~~~l~~~~~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~ 100 (693)
..+.|++|+.+|++++||+++++++||+++++++.+++.+...+|++|+||||||||++++.+|+.+..+.+|..+.+.+
T Consensus 166 ~~~~l~~~~~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~ 245 (852)
T TIGR03345 166 GTSALDQYTTDLTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVR 245 (852)
T ss_pred chhhHHHHhhhHHHHhcCCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCe
Confidence 45789999999999999999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEEEeccccccCCcccchHHHHHHHHHHHHHh-CCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCCcEEEEEech
Q 005511 101 VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQ-SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTL 179 (693)
Q Consensus 101 ~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~-~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~t~~ 179 (693)
++.++++.+.++..+.|+++.+++.++..+.. ..++||||||+|.+.+.+...+..+..++|++.+++|.+.+|++|+.
T Consensus 246 i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaTT~ 325 (852)
T TIGR03345 246 LLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATTW 325 (852)
T ss_pred EEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEEEecCH
Confidence 99999999888888999999999999999865 46789999999999987766666677889999999999999999999
Q ss_pred HHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhhhhHHHH
Q 005511 180 DEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDE 259 (693)
Q Consensus 180 ~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~ 259 (693)
.+|.+.+..|++|.|||+.|.+++|+.+++.+||+.+...+..++++.++++++..++.++.+|+.++++|+++++++++
T Consensus 326 ~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdllde 405 (852)
T TIGR03345 326 AEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDT 405 (852)
T ss_pred HHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHHHH
Confidence 99998999999999999999999999999999999888888888999999999999999999999999999999999999
Q ss_pred HhhHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHhcCcch-----HHHhhhHHHHHHHHHHHHHHHhhhhhhhH-------
Q 005511 260 AGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDF-----EKAGELRDREMDLKAQISALVDKGKEMSK------- 327 (693)
Q Consensus 260 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~~~~~~------- 327 (693)
||+..++.....|..+..++..+..+..+.....+...+ .....+...+..+..++..+...|.....
T Consensus 406 a~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (852)
T TIGR03345 406 ACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAALEARWQQEKELVEAILA 485 (852)
T ss_pred HHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988888888888888888887776666433211 11112223333444444444333322100
Q ss_pred --------------------------------hhhhcCCCCCccCHhHHHHHHHHHhCCCccCCCcchhHHHHHHHHHHh
Q 005511 328 --------------------------------AETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLH 375 (693)
Q Consensus 328 --------------------------------~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 375 (693)
...........|+.++|..+++.|+|+|..++..++...+.++++.|.
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~e~~~l~~l~~~L~ 565 (852)
T TIGR03345 486 LRAELEADADAPADDDAALRAQLAELEAALASAQGEEPLVFPEVDAQAVAEVVADWTGIPVGRMVRDEIEAVLSLPDRLA 565 (852)
T ss_pred HHHHhhhcccchhhhhHHHHHHHHHHHHHHHHHhhccccccceecHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhc
Confidence 000011224569999999999999999999999999999999999999
Q ss_pred ccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhc
Q 005511 376 KRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLI 455 (693)
Q Consensus 376 ~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 455 (693)
+.|+||+.+++.+.+++...+.|+..|.+|.+++||+||||||||.+|++||+.+++....++.+||++|.+.++++.|+
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~ 645 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLK 645 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999888899999999999999999999
Q ss_pred CCCCCCcCcCccchhhHHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhh
Q 005511 456 GSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEK 535 (693)
Q Consensus 456 g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~ 535 (693)
|+++||+|+.+++.+.+++++.+++||+|||+|++++.+++.|+++|++|.+++..|+.+++.|++||+|||.+...+..
T Consensus 646 g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~ 725 (852)
T TIGR03345 646 GSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMA 725 (852)
T ss_pred CCCCCcccccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887754
Q ss_pred cccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHHHHHHHHHHhcC-CCeEEe
Q 005511 536 GGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTK-DIELQV 614 (693)
Q Consensus 536 ~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l~~~~~~~~~~-~~~l~~ 614 (693)
... ++. .......+...+.+.+.+.|+|+|++||+ +|+|.||+.+++.+|++..+..+..++... ++.+.+
T Consensus 726 ~~~--~~~-----~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i 797 (852)
T TIGR03345 726 LCA--DPE-----TAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVY 797 (852)
T ss_pred hcc--Ccc-----cCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEE
Confidence 221 110 00123456677888889999999999995 999999999999999999999988887765 899999
Q ss_pred CHHHHHHHHHhccCCCCCcchHHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEc
Q 005511 615 TERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVD 668 (693)
Q Consensus 615 ~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~~~l~~~~l~~~~~~~~~~~v~~~ 668 (693)
+++++++|++.+|.+.+|+|+|++.|++.+..++++.++.+.........|++.
T Consensus 798 ~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~~l~~~~~~~~~~~~~~~ 851 (852)
T TIGR03345 798 SEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQILERLAAGEPIERIHLD 851 (852)
T ss_pred CHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHhChhcCCCeeEEEEe
Confidence 999999999999999999999999999999999999999988887777776653
No 4
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=7.6e-79 Score=679.97 Aligned_cols=574 Identities=47% Similarity=0.817 Sum_probs=525.2
Q ss_pred CCccHHHHHhhhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCce
Q 005511 21 KMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKK 100 (693)
Q Consensus 21 ~~~~l~~~~~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~ 100 (693)
+.+.|++|+.+|++.++.+.+++++|++++++++.+.+.+..++|+||+||||||||++|+.+++.+....+|..+.+..
T Consensus 165 ~~~~l~~~~~~l~~~a~~g~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~ 244 (758)
T PRK11034 165 GEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCT 244 (758)
T ss_pred chhHHHHHHHhHHHHHHcCCCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCe
Confidence 34689999999999999999999999999999999999999999999999999999999999999988777888888999
Q ss_pred EEEEeccccccCCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCC-CChHhHHHHHhhhhcCCCcEEEEEech
Q 005511 101 VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAA-EGAIDAANILKPSLARGELQCIGATTL 179 (693)
Q Consensus 101 ~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~-~~~~~~~~~L~~~l~~~~v~vI~~t~~ 179 (693)
++.++...+..+.++.|+++.+++.++..+.+..++||||||+|.+.+.+.. .+..++.+.|+++++++++.+|++||.
T Consensus 245 ~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~ 324 (758)
T PRK11034 245 IYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTY 324 (758)
T ss_pred EEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCCh
Confidence 9999988888888899999999999999998888899999999999877653 456678899999999999999999999
Q ss_pred HHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhhhhHHHH
Q 005511 180 DEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDE 259 (693)
Q Consensus 180 ~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~ 259 (693)
++|...+..|++|.|||+.|.+++|+.+++.+||+.+..+++.+|++.++++++..++.++.+|+.++++|+++++++++
T Consensus 325 ~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidllde 404 (758)
T PRK11034 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDE 404 (758)
T ss_pred HHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHH
Confidence 99988888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHhcCcchHHHhhhHHHHHHHHHHHHHHHhhhhhhhHhhhhcCCCCCcc
Q 005511 260 AGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVV 339 (693)
Q Consensus 260 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 339 (693)
|++..++.... .....+
T Consensus 405 a~a~~~~~~~~---------------------------------------------------------------~~~~~v 421 (758)
T PRK11034 405 AGARARLMPVS---------------------------------------------------------------KRKKTV 421 (758)
T ss_pred HHHhhccCccc---------------------------------------------------------------cccccc
Confidence 99876432100 002347
Q ss_pred CHhHHHHHHHHHhCCCccCCCcchhHHHHHHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcH
Q 005511 340 TEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGK 419 (693)
Q Consensus 340 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGK 419 (693)
+.+++..+++.|+|+|...+..++...+..+++.|.+.|+||+.+++.|..++...+.|+..+.+|.+++||+|||||||
T Consensus 422 ~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGK 501 (758)
T PRK11034 422 NVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGK 501 (758)
T ss_pred ChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCH
Confidence 88899999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred HHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCCcCcCccchhhHHHHcCCCEEEEEccCcccCHHHHHHHH
Q 005511 420 SELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMML 499 (693)
Q Consensus 420 t~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll 499 (693)
|++|+++|+.+ +.+|+.+||+++.+.+..+.++|.++||+|+...+.+.+.++..+++||||||+|++++++++.|+
T Consensus 502 T~lAk~LA~~l---~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LL 578 (758)
T PRK11034 502 TEVTVQLSKAL---GIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLL 578 (758)
T ss_pred HHHHHHHHHHh---CCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHH
Confidence 99999999998 679999999999988889999999999999988889999999999999999999999999999999
Q ss_pred HHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcE
Q 005511 500 QILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEM 579 (693)
Q Consensus 500 ~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~ 579 (693)
++|++|.+++..|+.+++.|++||+|||.+...+.. ..+||..... ...+.+.+++.|.|+|++|+|.+
T Consensus 579 q~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~--~~~g~~~~~~---------~~~~~~~~~~~f~pefl~Rid~i 647 (758)
T PRK11034 579 QVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETER--KSIGLIHQDN---------STDAMEEIKKIFTPEFRNRLDNI 647 (758)
T ss_pred HHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhh--cccCcccchh---------hHHHHHHHHHhcCHHHHccCCEE
Confidence 999999999988999999999999999998776543 2456642211 11234567788999999999999
Q ss_pred EEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHHHHHHHHHHHHHhcccCC
Q 005511 580 IVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 659 (693)
Q Consensus 580 v~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~~~l~~~~l~~~~~~ 659 (693)
|.|+||+.+++.+|++..+.++.+++...|+.+.++++++++|++.+|++.+|+|+|++.|++.+..++++.++.+.+.+
T Consensus 648 i~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~il~~~~~~ 727 (758)
T PRK11034 648 IWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVD 727 (758)
T ss_pred EEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHHHhCcccC
Confidence 99999999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEcCCC
Q 005511 660 GDSVIVDVDSDG 671 (693)
Q Consensus 660 ~~~~~v~~~~~~ 671 (693)
|+++.|++++++
T Consensus 728 ~~~~~v~~~~~~ 739 (758)
T PRK11034 728 GGQVTVALDKEK 739 (758)
T ss_pred CCEEEEEEECCc
Confidence 999999998764
No 5
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=100.00 E-value=1.6e-77 Score=690.70 Aligned_cols=640 Identities=57% Similarity=0.958 Sum_probs=562.0
Q ss_pred CCCCccHHHHHhhhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCC
Q 005511 19 GNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEG 98 (693)
Q Consensus 19 ~~~~~~l~~~~~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~ 98 (693)
..+.+.|++|+.+|+++++++.+++++||+++++++.+.|.+...+|++|+||||||||++++.+++.+..+.+|..+.+
T Consensus 150 ~~~~~~l~~~~~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~ 229 (852)
T TIGR03346 150 EDQYEALEKYARDLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKN 229 (852)
T ss_pred ccchhHHHHHhhhHHHHhhCCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcC
Confidence 34567999999999999999999999999999999999999999999999999999999999999999988888888889
Q ss_pred ceEEEEeccccccCCcccchHHHHHHHHHHHHHh-CCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCCcEEEEEe
Q 005511 99 KKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQ-SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGAT 177 (693)
Q Consensus 99 ~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~-~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~t 177 (693)
.+++.++++.+..+.++.|+++.+++.++..+.. ..++||||||+|.+.+.+...+..+..+.|+..++++.+.+|++|
T Consensus 230 ~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaT 309 (852)
T TIGR03346 230 KRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGAT 309 (852)
T ss_pred CeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeC
Confidence 9999999999888888999999999999998865 458999999999998776666667788999999999999999999
Q ss_pred chHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhhhhHH
Q 005511 178 TLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLI 257 (693)
Q Consensus 178 ~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll 257 (693)
+..+|...+..|+++.+||+.|.++.|+.+++..|++.+..++..++++.++++++..++.++.+|+.++++|++|++++
T Consensus 310 t~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidll 389 (852)
T TIGR03346 310 TLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLI 389 (852)
T ss_pred cHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHH
Confidence 99999888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHhcCcchHHH---hhhHHHHHHHHHHHHHHHhhhhhhh--------
Q 005511 258 DEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKA---GELRDREMDLKAQISALVDKGKEMS-------- 326 (693)
Q Consensus 258 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a---~~~~~~~~~~~~~~~~~~~~~~~~~-------- 326 (693)
++|++.+++.....|..+..++..+..+..+.....+..+.... ..+......+..++..+...|....
T Consensus 390 d~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (852)
T TIGR03346 390 DEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYADLEEQWKAEKAAIQGIQQ 469 (852)
T ss_pred HHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888888888887766665443321110 1111122222222222222111100
Q ss_pred -------------------------------------------H---hhhhcCCCCCccCHhHHHHHHHHHhCCCccCCC
Q 005511 327 -------------------------------------------K---AETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVS 360 (693)
Q Consensus 327 -------------------------------------------~---~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~~~~ 360 (693)
. ...........|+.++|..+++.|+|+|...+.
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~i~~v~~~~tgip~~~~~ 549 (852)
T TIGR03346 470 IKEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEETKPRLLREEVTAEEIAEVVSRWTGIPVSKML 549 (852)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhccccccccCCcCHHHHHHHHHHhcCCCccccc
Confidence 0 000011223569999999999999999999999
Q ss_pred cchhHHHHHHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeee
Q 005511 361 TDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRL 440 (693)
Q Consensus 361 ~~~~~~~~~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~ 440 (693)
.++.+.+..+++.+.+.++||+.+++.+..++.+.+.++..|.+|.+++||+||||||||++|++||+.+++.+.+++.+
T Consensus 550 ~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~ 629 (852)
T TIGR03346 550 EGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRI 629 (852)
T ss_pred HHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999989999999
Q ss_pred ccccccchhhhhhhcCCCCCCcCcCccchhhHHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCe
Q 005511 441 DMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNT 520 (693)
Q Consensus 441 ~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~ 520 (693)
||+++.+.+..+.++|.++||+|+.+++.+.+.++..+++||||||++++++.+++.|+++|++|.+++..|+.+++.|+
T Consensus 630 d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~ 709 (852)
T TIGR03346 630 DMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNT 709 (852)
T ss_pred echhhcccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCc
Confidence 99999998899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHHHHH
Q 005511 521 LLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKE 600 (693)
Q Consensus 521 ~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l~~ 600 (693)
+||+|||.+...+..... ...+..+...+.+.+.+.|+|+|++|||.++.|.|++.+++.+|+...+..
T Consensus 710 iiI~TSn~g~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~ 778 (852)
T TIGR03346 710 VIIMTSNLGSQFIQELAG-----------GDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGR 778 (852)
T ss_pred EEEEeCCcchHhHhhhcc-----------cccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHH
Confidence 999999998876543210 011344566677788899999999999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEcC
Q 005511 601 VFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDS 669 (693)
Q Consensus 601 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~~~l~~~~l~~~~~~~~~~~v~~~~ 669 (693)
+.+.+...++.+.++++++++|++++|++.+|+|+|++.|++.+..++++.++.+.+.+|.+++|+++.
T Consensus 779 l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~l~~~~~~~~~~~~~~~~ 847 (852)
T TIGR03346 779 LRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKILAGEVADGDTIVVDVEG 847 (852)
T ss_pred HHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEeeC
Confidence 888887778889999999999999999999999999999999999999999999999999999999964
No 6
>PRK10865 protein disaggregation chaperone; Provisional
Probab=100.00 E-value=1.1e-77 Score=687.75 Aligned_cols=644 Identities=54% Similarity=0.919 Sum_probs=560.5
Q ss_pred CCCccHHHHHhhhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCc
Q 005511 20 NKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGK 99 (693)
Q Consensus 20 ~~~~~l~~~~~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~ 99 (693)
.+.+.|++|+.+|++++|++.+++++||+.+++++.++|.+...+|++|+||||||||++++.+|+.+..+.+|..+.+.
T Consensus 156 ~~~~~l~~~~~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~ 235 (857)
T PRK10865 156 DQRQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGR 235 (857)
T ss_pred cchhHHHHHhhhHHHHHhcCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCC
Confidence 34578999999999999999999999999999999999999999999999999999999999999999888889888999
Q ss_pred eEEEEeccccccCCcccchHHHHHHHHHHHHHh-CCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCCcEEEEEec
Q 005511 100 KVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQ-SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATT 178 (693)
Q Consensus 100 ~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~-~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~t~ 178 (693)
+++.++++.+..+.++.|+++.+++.++..+.. ..++||||||+|.+.+.+...++.+..+.|++.+++|.+.+|++|+
T Consensus 236 ~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt 315 (857)
T PRK10865 236 RVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATT 315 (857)
T ss_pred EEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCC
Confidence 999999999988889999999999999998654 5688999999999998877777788999999999999999999999
Q ss_pred hHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhhhhHHH
Q 005511 179 LDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLID 258 (693)
Q Consensus 179 ~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~ 258 (693)
..+|..++..|+++.+||+.|.++.|+.+++..|++.+..++..+|++.++++++..++.++.+|+.++++|++|+++++
T Consensus 316 ~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi~LiD 395 (857)
T PRK10865 316 LDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLID 395 (857)
T ss_pred CHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCChHHHHHHH
Confidence 99998888999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HHhhHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHhcCcchHH---HhhhHHHHHHHHHHHHHHHhhhhhhh---------
Q 005511 259 EAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEK---AGELRDREMDLKAQISALVDKGKEMS--------- 326 (693)
Q Consensus 259 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~~~~~--------- 326 (693)
.+++..++.....|..+..++..+..+..+.+......+... ...+......+..++..+...|....
T Consensus 396 ~aaa~~rl~~~~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~~l~~lq~e~~~L~eq~k~~k~el~~~~~~ 475 (857)
T PRK10865 396 EAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTI 475 (857)
T ss_pred HHhcccccccccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 999999888888888888888888888776655533321110 01111122222222221111111000
Q ss_pred --------------------------------------Hhh-----hhcCCCCCccCHhHHHHHHHHHhCCCccCCCcch
Q 005511 327 --------------------------------------KAE-----TEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDE 363 (693)
Q Consensus 327 --------------------------------------~~~-----~~~~~~~~~v~~~~i~~~~~~~~~~~~~~~~~~~ 363 (693)
... .........|+.++|..+++.|+|+|..++..++
T Consensus 476 ~~ele~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~~ 555 (857)
T PRK10865 476 KAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMLESE 555 (857)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHHHhhhccccccccCccCHHHHHHHHHHHHCCCchhhhhhH
Confidence 000 0011123569999999999999999999999999
Q ss_pred hHHHHHHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccc
Q 005511 364 SDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMS 443 (693)
Q Consensus 364 ~~~~~~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~ 443 (693)
...+..+++.+++.++||+.+++.+..++.+.+.++..|.+|.+++||+||||||||++|++||+.+++.+.+++.+||+
T Consensus 556 ~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~s 635 (857)
T PRK10865 556 REKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMS 635 (857)
T ss_pred HHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhH
Confidence 99999999999999999999999999999999999999999988899999999999999999999998888899999999
Q ss_pred cccchhhhhhhcCCCCCCcCcCccchhhHHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEE
Q 005511 444 EFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLI 523 (693)
Q Consensus 444 ~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI 523 (693)
++...+..+.++|.+++|+|+.+++.+.+.++..+++||||||++++++.+++.|+++|++|.+++..|+.+++.|++||
T Consensus 636 e~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI 715 (857)
T PRK10865 636 EFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVI 715 (857)
T ss_pred HhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEE
Confidence 99888888899999999999998888899999999999999999999999999999999999999988999999999999
Q ss_pred EecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHHHHHHHH
Q 005511 524 MTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFD 603 (693)
Q Consensus 524 ~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l~~~~~ 603 (693)
+|||.++..+... +|. ..+..+...+...+.+.|.|+|++|+|.++.|.|++.+++.+|++.++.++..
T Consensus 716 ~TSN~g~~~~~~~---~~~--------~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~ 784 (857)
T PRK10865 716 MTSNLGSDLIQER---FGE--------LDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYK 784 (857)
T ss_pred EeCCcchHHHHHh---ccc--------cchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHH
Confidence 9999987766431 111 12344555666778888999999999999999999999999999999999888
Q ss_pred HHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEcCCCcEEE
Q 005511 604 RLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVTV 675 (693)
Q Consensus 604 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~~~l~~~~l~~~~~~~~~~~v~~~~~~~~~~ 675 (693)
++...++.+.++++++++|++++|++.+|+|+|++.|++.+..++++.++.+.+.+|.++.|++++ +.+++
T Consensus 785 rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~la~~iL~g~~~~~~~~~~~~~~-~~~~~ 855 (857)
T PRK10865 785 RLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVND-DRIVA 855 (857)
T ss_pred HHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHHHHHHcCcCCCCCEEEEEEEC-CEEee
Confidence 777668888999999999999999999999999999999999999999999999999999999964 45544
No 7
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=1.8e-78 Score=690.01 Aligned_cols=570 Identities=51% Similarity=0.893 Sum_probs=524.3
Q ss_pred CCccHHHHHhhhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCce
Q 005511 21 KMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKK 100 (693)
Q Consensus 21 ~~~~l~~~~~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~ 100 (693)
+.+.|++|+.+|++++||+.+|+++||+++++++.+.|.+..++|++|+||||||||++++.+|+.+....+|..+.+.+
T Consensus 161 ~~~~l~~~~~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~ 240 (731)
T TIGR02639 161 QEDALEKYTVDLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAK 240 (731)
T ss_pred chhHHHHHhhhHHHHHhcCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCe
Confidence 45689999999999999999999999999999999999999999999999999999999999999998888898888999
Q ss_pred EEEEeccccccCCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCC-ChHhHHHHHhhhhcCCCcEEEEEech
Q 005511 101 VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAE-GAIDAANILKPSLARGELQCIGATTL 179 (693)
Q Consensus 101 ~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~-~~~~~~~~L~~~l~~~~v~vI~~t~~ 179 (693)
++.++++.+..+.++.|+++.+++.+++.+....++||||||+|.+++.+... ++.+..+.|++.++++.+.+|++||+
T Consensus 241 ~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~ 320 (731)
T TIGR02639 241 IYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTTY 320 (731)
T ss_pred EEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecCH
Confidence 99999999998888999999999999999987788999999999998765433 34578899999999999999999999
Q ss_pred HHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhhhhHHHH
Q 005511 180 DEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDE 259 (693)
Q Consensus 180 ~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~ 259 (693)
.+|.+.+..|+++.|||+.|.+++|+.+++.+||+....++..++++.++++++..++.++.+|+.++++|+++++++++
T Consensus 321 ~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~ 400 (731)
T TIGR02639 321 EEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDE 400 (731)
T ss_pred HHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHH
Confidence 99988889999999999999999999999999999999888888899999999999999999999999999999999999
Q ss_pred HhhHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHhcCcchHHHhhhHHHHHHHHHHHHHHHhhhhhhhHhhhhcCCCCCcc
Q 005511 260 AGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVV 339 (693)
Q Consensus 260 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 339 (693)
|++..+++.... ....|
T Consensus 401 a~a~~~~~~~~~---------------------------------------------------------------~~~~v 417 (731)
T TIGR02639 401 AGASFRLRPKAK---------------------------------------------------------------KKANV 417 (731)
T ss_pred hhhhhhcCcccc---------------------------------------------------------------ccccc
Confidence 998765432110 03458
Q ss_pred CHhHHHHHHHHHhCCCccCCCcchhHHHHHHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcH
Q 005511 340 TEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGK 419 (693)
Q Consensus 340 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGK 419 (693)
+.+++..+++.++|+|...+.+++...+..++..|.+.|+||+.+++.+.+.+...+.++..|.+|.+++||+|||||||
T Consensus 418 ~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGK 497 (731)
T TIGR02639 418 SVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGK 497 (731)
T ss_pred CHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCCcCcCccchhhHHHHcCCCEEEEEccCcccCHHHHHHHH
Q 005511 420 SELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMML 499 (693)
Q Consensus 420 t~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll 499 (693)
|++|++||+.+ +.+++.+||+++.+.++.+.++|+++||+|+.+++.+.++++..+++||||||+|++++++++.|+
T Consensus 498 T~lA~~la~~l---~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll 574 (731)
T TIGR02639 498 TELAKQLAEAL---GVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILL 574 (731)
T ss_pred HHHHHHHHHHh---cCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHH
Confidence 99999999998 678999999999999999999999999999999899999999999999999999999999999999
Q ss_pred HHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcE
Q 005511 500 QILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEM 579 (693)
Q Consensus 500 ~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~ 579 (693)
++|++|.+++..|+.+++.|++||+|||.+...+... .+||... .....+...+.+.|.|+|++|||.+
T Consensus 575 ~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~--~~~f~~~---------~~~~~~~~~~~~~f~pef~~Rid~V 643 (731)
T TIGR02639 575 QVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKP--PIGFGSE---------NVESKSDKAIKKLFSPEFRNRLDAI 643 (731)
T ss_pred HhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhc--cCCcchh---------hhHHHHHHHHHhhcChHHHhcCCeE
Confidence 9999999999999999999999999999998766432 2455311 1223556777888999999999999
Q ss_pred EEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHHHHHHHHHHHHHhcccCC
Q 005511 580 IVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 659 (693)
Q Consensus 580 v~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~~~l~~~~l~~~~~~ 659 (693)
|+|.||+.+++.+|+++.++++.+++...++.+.++++++++|++.+|.+.+|+|+|++.|++.+..++++.++.+.+.+
T Consensus 644 i~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~~~l~~~~~~ 723 (731)
T TIGR02639 644 IHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEILFGKLKK 723 (731)
T ss_pred EEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHHHHHhCcCCC
Confidence 99999999999999999999998888888999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEE
Q 005511 660 GDSVIVDV 667 (693)
Q Consensus 660 ~~~~~v~~ 667 (693)
|.++.|++
T Consensus 724 ~~~~~~~~ 731 (731)
T TIGR02639 724 GGSVKVDL 731 (731)
T ss_pred CCEEEEeC
Confidence 99998863
No 8
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-65 Score=561.68 Aligned_cols=649 Identities=54% Similarity=0.821 Sum_probs=553.6
Q ss_pred CCCCccHHHHHhhhhhhhhcCCCCCccCC-HHHHHHHHHHHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 005511 19 GNKMPTLEEYGTNLTKLAEEGKLDPVVGR-QPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIE 97 (693)
Q Consensus 19 ~~~~~~l~~~~~~l~~~~~~~~~~~iiG~-~~~~~~l~~~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~ 97 (693)
..+.+.|.+|+.++++.++.+.+++++|+ ++.++++.++|.+..++|-+|+|.||+|||.++..+++.+..+.+|..+.
T Consensus 163 ~~~~~~L~~~~~dl~p~a~~gkldPvigr~deeirRvi~iL~Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~ 242 (898)
T KOG1051|consen 163 LWPLLFLENYGTDLTPRARQGKLDPVIGRHDEEIRRVIEILSRKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLK 242 (898)
T ss_pred ccchhHHHhcccccChhhhccCCCCccCCchHHHHHHHHHHhccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCcccc
Confidence 44688999999999999999889999999 99999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeccccccCCcccchHHHHHHHHHHHHH-hCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCCcEEEEE
Q 005511 98 GKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK-QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGA 176 (693)
Q Consensus 98 ~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~-~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~ 176 (693)
+..++.++...+..+.+++|+++.+++.+...+. ...+.||||||+|-+...+...+..+..+.|+..+.++++.+|++
T Consensus 243 ~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~rg~l~~IGa 322 (898)
T KOG1051|consen 243 DKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYGAIDAANLLKPLLARGGLWCIGA 322 (898)
T ss_pred ccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcchHHHHHHhhHHHHhcCCeEEEec
Confidence 9999999999999999999999999999999988 557889999999999888777667789999999999999999999
Q ss_pred echHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhhhhH
Q 005511 177 TTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDL 256 (693)
Q Consensus 177 t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l 256 (693)
|+..+|.+.+.-+|++.+||+.+.++.|+.++...||.....++..+|+..++++.+...+..+..|+..+++|..++++
T Consensus 323 tT~e~Y~k~iekdPalErrw~l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~aidl 402 (898)
T KOG1051|consen 323 TTLETYRKCIEKDPALERRWQLVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQLSARYITLSFLPDCAIDL 402 (898)
T ss_pred ccHHHHHHHHhhCcchhhCcceeEeccCcccchhhhhhhhhhhhccccCCcccccccccccchhhhhcccCcCchhcccH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHHHhhHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHhcCcc--------hHHHhhh-------HHHHHHHHHHHHHHHhh
Q 005511 257 IDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQD--------FEKAGEL-------RDREMDLKAQISALVDK 321 (693)
Q Consensus 257 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~a~~~-------~~~~~~~~~~~~~~~~~ 321 (693)
.++|++..+......|..++..+.....+..+.....++.+ +...... ......-...+..+...
T Consensus 403 ~dEa~a~~~~~~~~lP~wL~~~~~~~~~~~~e~~~L~kk~d~~~h~r~~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~~~ 482 (898)
T KOG1051|consen 403 EDEAAALVKSQAESLPPWLQNLERVDIKLQDEISELQKKWNQALHKRPSLESLAPSKPTQQPLSASVDSERSVIEELKLK 482 (898)
T ss_pred HHHHHHHHhhhhhhCCHHHHhhhhhhhhhHHHHHHHHHhhhhhhccccccccccccccccccchhhhccchhHHhhhccc
Confidence 99999999998888998887776555554444433333333 1111000 00000000000000000
Q ss_pred hhhhhHhh-hhcCCCCCc------------------------cCHhHHHHHHHHHhCCCccCCCcchhHHHHHHHHHHhc
Q 005511 322 GKEMSKAE-TEAGDVGPV------------------------VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHK 376 (693)
Q Consensus 322 ~~~~~~~~-~~~~~~~~~------------------------v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 376 (693)
........ ......... -+..++..+...|+|+|.......+.+.+..+++.|.+
T Consensus 483 ~~~~~~~~~~~k~~r~~d~~~~~~l~~~~~p~~~~~~~~~~~~~~~~i~~~~s~~tgip~~~~~~~e~~~l~~L~~~L~~ 562 (898)
T KOG1051|consen 483 KNSLDRNSLLAKAHRPNDYTRETDLRYGRIPDELSEKSNDNQGGESDISEVVSRWTGIPVDRLAEAEAERLKKLEERLHE 562 (898)
T ss_pred cCCcccchhhhcccCCCCcchhhhccccccchhhhhhcccccCCccchhhhhhhhcCCchhhhhhhHHHHHHHHHHHHHh
Confidence 00000000 000000011 15668999999999999999999999999999999999
Q ss_pred cccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcC
Q 005511 377 RVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIG 456 (693)
Q Consensus 377 ~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g 456 (693)
.|+||++++..|.+++...+.|+..| +|..++||.||+|+|||.+|+++|..+|++...|+.+||++|.+ +++++|
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~-~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~e---vsklig 638 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDP-NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQE---VSKLIG 638 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCC-CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhh---hhhccC
Confidence 99999999999999999999999988 88899999999999999999999999999999999999999987 889999
Q ss_pred CCCCCcCcCccchhhHHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhc
Q 005511 457 SPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKG 536 (693)
Q Consensus 457 ~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~ 536 (693)
.++||+|+++++.|++.++..|++||+|||||++++.+++.|+++||+|++++..|+++++.|++||+|+|.+...+...
T Consensus 639 sp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~~~~~i~~~ 718 (898)
T KOG1051|consen 639 SPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNVGSSAIAND 718 (898)
T ss_pred CCcccccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccceEEEEecccchHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988866543
Q ss_pred ccccccccCcCcccchHHHHHHHHHHHHh----hcCchhHhhccCcEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 005511 537 GRRIGFDLDYDEKDSSYNRIKSLVTEELK----QYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIEL 612 (693)
Q Consensus 537 ~~~~~f~~~~~~~~~~~~~l~~~~~~~l~----~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l 612 (693)
..-.++......+...+...+..+.+... ..|+|+|++|+|.++.|.+++.+++.+|+...+.+..+++..+++..
T Consensus 719 ~~~~~~l~~~~~~~~~~~~~k~~v~~~~~~~~~~~~r~Ef~nrid~i~lf~~l~~~~~~~i~~~~~~e~~~r~~~~~~~~ 798 (898)
T KOG1051|consen 719 ASLEEKLLDMDEKRGSYRLKKVQVSDAVRIYNKQFFRKEFLNRIDELDLNLPLDRDELIEIVNKQLTEIEKRLEERELLL 798 (898)
T ss_pred cccccccccchhhhhhhhhhhhhhhhhhhcccccccChHHhcccceeeeecccchhhHhhhhhhHHHHHHHHhhhhHHHH
Confidence 32223333333334444455556666777 88999999999999999999999999999999999888887777767
Q ss_pred EeCHHHHHHHHHhccCCCCCcchHHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEcCCCc
Q 005511 613 QVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGN 672 (693)
Q Consensus 613 ~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~~~l~~~~l~~~~~~~~~~~v~~~~~~~ 672 (693)
.+++.+.+.+...+|++.||+|++++.|++.+...++..++ ..++++.++.|++...+.
T Consensus 799 ~v~~~~~~~v~~~~~d~~ygAr~ikr~i~~~~~~~la~~~l-~ei~~~~~~~i~~~~~~~ 857 (898)
T KOG1051|consen 799 LVTDRVDDKVLFKGYDFDYGARPIKRSIEERFENRLAEALL-GEVEDGLTERILVADGWS 857 (898)
T ss_pred HHHHHHHhhhhhcCcChHHHhhHHHHHHHHHHHHHHhhhhe-eeecCCceEEEEeccccc
Confidence 79999999999999999999999999999999999999999 899999999999987433
No 9
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-52 Score=427.83 Aligned_cols=497 Identities=21% Similarity=0.325 Sum_probs=351.7
Q ss_pred CCCCccCCHHHHHHHHHHH------------hcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEecc
Q 005511 40 KLDPVVGRQPQIERVVQIL------------GRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMG 107 (693)
Q Consensus 40 ~~~~iiG~~~~~~~l~~~l------------~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 107 (693)
+|.++-|.+..+..|.+++ +..+++++|||||||||||+||+++|.++ +.+++.+++.
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel----------~vPf~~isAp 257 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL----------GVPFLSISAP 257 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc----------CCceEeecch
Confidence 6899999999999877654 34778999999999999999999999999 8999999999
Q ss_pred ccccCCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCCh---HhHHHHHhhhhc--------CCCcEEEEE
Q 005511 108 LLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGA---IDAANILKPSLA--------RGELQCIGA 176 (693)
Q Consensus 108 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~---~~~~~~L~~~l~--------~~~v~vI~~ 176 (693)
.+.+| +.|+.++.++++|+.+....|||+||||||.+.+.+..... ......|...|+ ...|+||++
T Consensus 258 eivSG--vSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgA 335 (802)
T KOG0733|consen 258 EIVSG--VSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGA 335 (802)
T ss_pred hhhcc--cCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEec
Confidence 98854 56999999999999999999999999999999887655321 223444444443 245999999
Q ss_pred echHHHHhhhhcCHHHhc--cCC-ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhh
Q 005511 177 TTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKA 253 (693)
Q Consensus 177 t~~~~~~~~~~l~~~l~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 253 (693)
||+|+ .+||+|+| ||+ .|.+..|+..+|.+||+.+++.+...- +-.+..+|+++.||++ .+.
T Consensus 336 TnRPD-----slDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-----~~d~~qlA~lTPGfVG-----ADL 400 (802)
T KOG0733|consen 336 TNRPD-----SLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-----DFDFKQLAKLTPGFVG-----ADL 400 (802)
T ss_pred CCCCc-----ccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-----CcCHHHHHhcCCCccc-----hhH
Confidence 99998 89999999 998 999999999999999999988643222 2247889999999997 788
Q ss_pred hhHHHHHhhHHHHhhcCCcHH-HHHHHHHHHHHHHHHHHHhcCcchHHHh-hhH-----HHHHHHHHHHHHHHhhhhhhh
Q 005511 254 IDLIDEAGSRVRLRHAQLPEE-ARELEKELRQITKEKNEAVRGQDFEKAG-ELR-----DREMDLKAQISALVDKGKEMS 326 (693)
Q Consensus 254 ~~ll~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~-----~~~~~~~~~~~~~~~~~~~~~ 326 (693)
..++.+|+..+.-|..+.... .. ... ..+...+++++... .+. .....+..-+.....++-+
T Consensus 401 ~AL~~~Aa~vAikR~ld~~~~p~~-------~~~--~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d-- 469 (802)
T KOG0733|consen 401 MALCREAAFVAIKRILDQSSSPLT-------KVP--ISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPD-- 469 (802)
T ss_pred HHHHHHHHHHHHHHHhhcccCccc-------cCC--ccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCC--
Confidence 888888887765553221110 00 000 00000001110000 000 0000000000001111111
Q ss_pred HhhhhcCCCCCccCHhHHHHHHHHHhC-------CCccCCCcchhHHHHHHHHHHhccccChHHHHHHHHHHHHHHhhcC
Q 005511 327 KAETEAGDVGPVVTEVDIQHIVSAWTG-------IPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGL 399 (693)
Q Consensus 327 ~~~~~~~~~~~~v~~~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~ 399 (693)
..+........+..+|+..++....- .-+.+++|+++..+..++..|...|+..- ++.=...+.|+
T Consensus 470 -~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~Pi------K~pd~~k~lGi 542 (802)
T KOG0733|consen 470 -PLSKELLEGLSIKFEDFEEALSKIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPI------KRPDLFKALGI 542 (802)
T ss_pred -CcChHHhccceecHHHHHHHHHhcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhc------cCHHHHHHhCC
Confidence 11112233566788888877754321 12345677777777777766654443321 11112234565
Q ss_pred CCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCCcCcCcc--chhhHHHHcC
Q 005511 400 KNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRR 477 (693)
Q Consensus 400 ~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~ 477 (693)
..| .++||+||||||||.+|+++|++. +.+|+.+..++++++ |||++|+ +++|..++.+
T Consensus 543 ~~P----sGvLL~GPPGCGKTLlAKAVANEa---g~NFisVKGPELlNk------------YVGESErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 543 DAP----SGVLLCGPPGCGKTLLAKAVANEA---GANFISVKGPELLNK------------YVGESERAVRQVFQRARAS 603 (802)
T ss_pred CCC----CceEEeCCCCccHHHHHHHHhhhc---cCceEeecCHHHHHH------------HhhhHHHHHHHHHHHhhcC
Confidence 554 369999999999999999999996 899999999999977 9999997 8899999999
Q ss_pred CCEEEEEccCcccCH-----------HHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhcccccccccCc
Q 005511 478 PYTVVLFDEIEKAHP-----------DVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDY 546 (693)
Q Consensus 478 ~~~vl~iDEid~l~~-----------~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~ 546 (693)
.+|||||||+|.|.| .++|+||..|++.. ...++.+|++||.++-
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~---------~R~gV~viaATNRPDi--------------- 659 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLE---------ERRGVYVIAATNRPDI--------------- 659 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccc---------cccceEEEeecCCCcc---------------
Confidence 999999999999944 59999999999853 3357889999997764
Q ss_pred CcccchHHHHHHHHHHHHhhcCchhHh--hccCcEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCHHH-HHHHH
Q 005511 547 DEKDSSYNRIKSLVTEELKQYFRPEFL--NRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERF-RERVV 623 (693)
Q Consensus 547 ~~~~~~~~~l~~~~~~~l~~~~~~~l~--~R~~~~v~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~-~~~l~ 623 (693)
++|+++ +|||.+++..+++.+|...|++...+. ....+++++ ++.|+
T Consensus 660 ---------------------IDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn---------~k~pl~~dVdl~eia 709 (802)
T KOG0733|consen 660 ---------------------IDPAILRPGRLDKLLYVGLPNAEERVAILKTITKN---------TKPPLSSDVDLDEIA 709 (802)
T ss_pred ---------------------cchhhcCCCccCceeeecCCCHHHHHHHHHHHhcc---------CCCCCCcccCHHHHh
Confidence 789998 899999999999999999999776643 112244443 34555
Q ss_pred HhccCCCCCcchHHHHHHHHHHHHHHHHHHh
Q 005511 624 EEGYNPSYGARPLRRAIMRLLEDSMAEKMLA 654 (693)
Q Consensus 624 ~~~~~~~~g~r~l~~~i~~~i~~~l~~~~l~ 654 (693)
...-..+|...+|...+++.-..+|-+.+..
T Consensus 710 ~~~~c~gftGADLaaLvreAsi~AL~~~~~~ 740 (802)
T KOG0733|consen 710 RNTKCEGFTGADLAALVREASILALRESLFE 740 (802)
T ss_pred hcccccCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 5433334555678888888777777777764
No 10
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-46 Score=387.35 Aligned_cols=435 Identities=25% Similarity=0.349 Sum_probs=329.0
Q ss_pred CCccCCHHHHHHHHHHH-------------hcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccc
Q 005511 42 DPVVGRQPQIERVVQIL-------------GRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGL 108 (693)
Q Consensus 42 ~~iiG~~~~~~~l~~~l-------------~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 108 (693)
+.+.|...++..+..++ +.++++++|+|||||||||.+++++|++. +..++.+++..
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~----------~a~~~~i~~pe 253 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEY----------GAFLFLINGPE 253 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHh----------CceeEecccHH
Confidence 46667777776665543 34778999999999999999999999998 78899999998
Q ss_pred cccCCcccchHHHHHHHHHHHHHhCC-CeEEEEeccchhhhCCCCCC--hHhHHHHHhhhhc----CCCcEEEEEechHH
Q 005511 109 LVAGTKYRGEFEERLKKLMEEIKQSD-EIILFIDEVHTLIGAGAAEG--AIDAANILKPSLA----RGELQCIGATTLDE 181 (693)
Q Consensus 109 l~~~~~~~g~~~~~l~~~~~~~~~~~-~~vL~iDEid~l~~~~~~~~--~~~~~~~L~~~l~----~~~v~vI~~t~~~~ 181 (693)
+. .++.|+++..++..|..+.+.. |.++||||+|.+++.+.... ...+...|+.+++ .+.++|+++||.+.
T Consensus 254 li--~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~ 331 (693)
T KOG0730|consen 254 LI--SKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPD 331 (693)
T ss_pred HH--HhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCcc
Confidence 88 5678999999999999999988 99999999999998654433 3445555666654 46799999999998
Q ss_pred HHhhhhcCHHHhc-cCC-ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhhhhHHHH
Q 005511 182 YRKHIEKDPALER-RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDE 259 (693)
Q Consensus 182 ~~~~~~l~~~l~~-Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~ 259 (693)
.+|++++| ||+ .+++..|+..+|.+|++.+.+.+ +.. ++..+..++..+.||++ .++..++.+
T Consensus 332 -----sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~----~~~-~~~~l~~iA~~thGyvG-----aDL~~l~~e 396 (693)
T KOG0730|consen 332 -----SLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKM----NLL-SDVDLEDIAVSTHGYVG-----ADLAALCRE 396 (693)
T ss_pred -----ccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhc----CCc-chhhHHHHHHHccchhH-----HHHHHHHHH
Confidence 89999998 998 89999999999999999988763 222 56788999999999987 677777777
Q ss_pred HhhHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHhcCcchHHHhhhHHHHHHHHHHHHHHHhhhhhhhHhhhhcCCCCCcc
Q 005511 260 AGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVV 339 (693)
Q Consensus 260 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 339 (693)
|...+..+ ++++|..|.. .+
T Consensus 397 a~~~~~r~--------------------------~~~~~~~A~~----------------------------------~i 416 (693)
T KOG0730|consen 397 ASLQATRR--------------------------TLEIFQEALM----------------------------------GI 416 (693)
T ss_pred HHHHHhhh--------------------------hHHHHHHHHh----------------------------------cC
Confidence 76543222 1112211111 11
Q ss_pred CHhHHHHHHHHHhCCCccCCCcchhHHHHHHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcH
Q 005511 340 TEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGK 419 (693)
Q Consensus 340 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGK 419 (693)
.+..+...+ ++..+++|+++..+++++..+.+.|.+.-... -...+.|+.+|+ +|||||||||||
T Consensus 417 ~psa~Re~~-----ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~p------e~F~r~Gi~ppk----GVLlyGPPGC~K 481 (693)
T KOG0730|consen 417 RPSALREIL-----VEMPNVSWDDIGGLEELKRELQQAVEWPLKHP------EKFARFGISPPK----GVLLYGPPGCGK 481 (693)
T ss_pred Cchhhhhee-----ccCCCCChhhccCHHHHHHHHHHHHhhhhhch------HHHHHhcCCCCc----eEEEECCCCcch
Confidence 122222211 33445566665555666655554444432221 122345555543 599999999999
Q ss_pred HHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCCcCcCcc--chhhHHHHcCCCEEEEEccCccc-------
Q 005511 420 SELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKA------- 490 (693)
Q Consensus 420 t~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~l------- 490 (693)
|++|+++|++. +.+|+.+.++++.++ |+|++|. +.+|+.++++.++|+||||||.+
T Consensus 482 T~lAkalAne~---~~nFlsvkgpEL~sk------------~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~ 546 (693)
T KOG0730|consen 482 TLLAKALANEA---GMNFLSVKGPELFSK------------YVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGS 546 (693)
T ss_pred HHHHHHHhhhh---cCCeeeccCHHHHHH------------hcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCC
Confidence 99999999997 899999999999876 9999987 88999999999999999999998
Q ss_pred ----CHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhh
Q 005511 491 ----HPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQ 566 (693)
Q Consensus 491 ----~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~ 566 (693)
...++++||+.|++.. ...++++|++||.+..
T Consensus 547 ~~~v~~RVlsqLLtEmDG~e---------~~k~V~ViAATNRpd~----------------------------------- 582 (693)
T KOG0730|consen 547 SSGVTDRVLSQLLTEMDGLE---------ALKNVLVIAATNRPDM----------------------------------- 582 (693)
T ss_pred ccchHHHHHHHHHHHccccc---------ccCcEEEEeccCChhh-----------------------------------
Confidence 2358999999998743 2368999999997765
Q ss_pred cCchhHhh--ccCcEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCHH-HHHHHHHhccCCCCCcchHHHHHHHH
Q 005511 567 YFRPEFLN--RLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTER-FRERVVEEGYNPSYGARPLRRAIMRL 643 (693)
Q Consensus 567 ~~~~~l~~--R~~~~v~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~-~~~~l~~~~~~~~~g~r~l~~~i~~~ 643 (693)
++++|++ |||.++++++++.+...+|++..+++ ..++++ -++.|++. .-.|..++|...++.+
T Consensus 583 -ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk-----------mp~~~~vdl~~La~~--T~g~SGAel~~lCq~A 648 (693)
T KOG0730|consen 583 -IDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK-----------MPFSEDVDLEELAQA--TEGYSGAEIVAVCQEA 648 (693)
T ss_pred -cCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc-----------CCCCccccHHHHHHH--hccCChHHHHHHHHHH
Confidence 8999997 99999999999999999999887764 235555 24667763 3345667899988877
Q ss_pred HHHHHHHH
Q 005511 644 LEDSMAEK 651 (693)
Q Consensus 644 i~~~l~~~ 651 (693)
-..++.+-
T Consensus 649 ~~~a~~e~ 656 (693)
T KOG0730|consen 649 ALLALRES 656 (693)
T ss_pred HHHHHHHh
Confidence 76655443
No 11
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=3.2e-39 Score=369.85 Aligned_cols=460 Identities=23% Similarity=0.326 Sum_probs=320.1
Q ss_pred cCCCCCccCCHHHHHHHHHHHh-------------cCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEE
Q 005511 38 EGKLDPVVGRQPQIERVVQILG-------------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITL 104 (693)
Q Consensus 38 ~~~~~~iiG~~~~~~~l~~~l~-------------~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 104 (693)
.-+|+++.|.+++++++.+++. ..++.++||+||||||||++++++|+.+ +.+++.+
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~----------~~~~i~i 243 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA----------GAYFISI 243 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh----------CCeEEEE
Confidence 3478999999999999887653 2456899999999999999999999988 6778889
Q ss_pred eccccccCCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCC---hHhHHHHHhhhhc----CCCcEEEEEe
Q 005511 105 DMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEG---AIDAANILKPSLA----RGELQCIGAT 177 (693)
Q Consensus 105 ~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~---~~~~~~~L~~~l~----~~~v~vI~~t 177 (693)
++..+. ..+.|..+..++.+|..+....|+||||||+|.+.+.+.... .....+.|..+++ .+.+++|++|
T Consensus 244 ~~~~i~--~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~at 321 (733)
T TIGR01243 244 NGPEIM--SKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGAT 321 (733)
T ss_pred ecHHHh--cccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeec
Confidence 887776 456788888999999999988999999999999987654322 2334555555553 5678899999
Q ss_pred chHHHHhhhhcCHHHhc--cCC-ccccCCCCHHHHHHHHHHHHHhHhhhcCcccC-hHHHHHHHHhhhhhhcccCCchhh
Q 005511 178 TLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYT-DEALVSAAQLSYQYISDRFLPDKA 253 (693)
Q Consensus 178 ~~~~~~~~~~l~~~l~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~~~ 253 (693)
|.++ .+|+++++ ||. .+.++.|+.++|.+||+..... ..+. +..++.+++.+.||.+ .+.
T Consensus 322 n~~~-----~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~------~~l~~d~~l~~la~~t~G~~g-----adl 385 (733)
T TIGR01243 322 NRPD-----ALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRN------MPLAEDVDLDKLAEVTHGFVG-----ADL 385 (733)
T ss_pred CChh-----hcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcC------CCCccccCHHHHHHhCCCCCH-----HHH
Confidence 9987 68999988 997 8999999999999999966543 2222 3357888999888865 455
Q ss_pred hhHHHHHhhHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHhcCcchHHHhhhHHHHHHHHHHHHHHHhhhhhhhHhhhhcC
Q 005511 254 IDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAG 333 (693)
Q Consensus 254 ~~ll~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (693)
..++..|...+..+..... ..++.... + ....
T Consensus 386 ~~l~~~a~~~al~r~~~~~----------------------~~~~~~~~------------i--------------~~~~ 417 (733)
T TIGR01243 386 AALAKEAAMAALRRFIREG----------------------KINFEAEE------------I--------------PAEV 417 (733)
T ss_pred HHHHHHHHHHHHHHHhhcc----------------------cccccccc------------c--------------cchh
Confidence 5566665544322211000 00000000 0 0000
Q ss_pred CCCCccCHhHHHHHHHHHhCCCccCCCcchhHHHHHHHHHHhccccChHHHHHHHHHHHHHHhhc----CCCCCCCceEE
Q 005511 334 DVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVG----LKNPNRPIASF 409 (693)
Q Consensus 334 ~~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~----~~~~~~~~~~i 409 (693)
.....++.+++..++...... . ..+.+......-+.++.|++.+++.|.+.+...... .....++..++
T Consensus 418 ~~~~~v~~~df~~Al~~v~ps---~----~~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~gi 490 (733)
T TIGR01243 418 LKELKVTMKDFMEALKMVEPS---A----IREVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGV 490 (733)
T ss_pred cccccccHHHHHHHHhhcccc---c----cchhhccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceE
Confidence 012335555555554432110 0 011111222334677889999998888877643210 00011223359
Q ss_pred EEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCCcCcCcc--chhhHHHHcCCCEEEEEccC
Q 005511 410 IFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEI 487 (693)
Q Consensus 410 Ll~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEi 487 (693)
||+||||||||++|+++|+.+ +.+|+.++++++.+. |+|+++. +.++..++...++||||||+
T Consensus 491 LL~GppGtGKT~lakalA~e~---~~~fi~v~~~~l~~~------------~vGese~~i~~~f~~A~~~~p~iifiDEi 555 (733)
T TIGR01243 491 LLFGPPGTGKTLLAKAVATES---GANFIAVRGPEILSK------------WVGESEKAIREIFRKARQAAPAIIFFDEI 555 (733)
T ss_pred EEECCCCCCHHHHHHHHHHhc---CCCEEEEehHHHhhc------------ccCcHHHHHHHHHHHHHhcCCEEEEEECh
Confidence 999999999999999999997 789999999887644 8888765 67788888888999999999
Q ss_pred cccC------------HHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHH
Q 005511 488 EKAH------------PDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNR 555 (693)
Q Consensus 488 d~l~------------~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~ 555 (693)
|.+. ..+.+.|+..|++-. ...++++|+|||....
T Consensus 556 d~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~---------~~~~v~vI~aTn~~~~------------------------ 602 (733)
T TIGR01243 556 DAIAPARGARFDTSVTDRIVNQLLTEMDGIQ---------ELSNVVVIAATNRPDI------------------------ 602 (733)
T ss_pred hhhhccCCCCCCccHHHHHHHHHHHHhhccc---------CCCCEEEEEeCCChhh------------------------
Confidence 9873 246788888887521 2357899999996654
Q ss_pred HHHHHHHHHhhcCchhHhh--ccCcEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCHH-HHHHHHHhccCCCCC
Q 005511 556 IKSLVTEELKQYFRPEFLN--RLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTER-FRERVVEEGYNPSYG 632 (693)
Q Consensus 556 l~~~~~~~l~~~~~~~l~~--R~~~~v~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~-~~~~l~~~~~~~~~g 632 (693)
++|++++ |||.++.+++|+.++..+|++..+.. .. ++++ -++.|++ ....|.
T Consensus 603 ------------ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~---------~~--~~~~~~l~~la~--~t~g~s 657 (733)
T TIGR01243 603 ------------LDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRS---------MP--LAEDVDLEELAE--MTEGYT 657 (733)
T ss_pred ------------CCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcC---------CC--CCccCCHHHHHH--HcCCCC
Confidence 8899985 99999999999999999998755432 21 2121 2455665 344566
Q ss_pred cchHHHHHHHHHHHHHHHHHH
Q 005511 633 ARPLRRAIMRLLEDSMAEKML 653 (693)
Q Consensus 633 ~r~l~~~i~~~i~~~l~~~~l 653 (693)
..++...++.+...++.+.+.
T Consensus 658 gadi~~~~~~A~~~a~~~~~~ 678 (733)
T TIGR01243 658 GADIEAVCREAAMAALRESIG 678 (733)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 778988888777776665443
No 12
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-39 Score=338.94 Aligned_cols=450 Identities=20% Similarity=0.308 Sum_probs=308.0
Q ss_pred CccCCHHHHHHHHHHHhcCCC---------CCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCC
Q 005511 43 PVVGRQPQIERVVQILGRRTK---------NNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGT 113 (693)
Q Consensus 43 ~iiG~~~~~~~l~~~l~~~~~---------~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (693)
...+++..+..+..++..+.. ..+||+|+||||||++++++|+++ |.+++.++|..+.+..
T Consensus 402 ~~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~l----------g~h~~evdc~el~~~s 471 (953)
T KOG0736|consen 402 SPPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASEL----------GLHLLEVDCYELVAES 471 (953)
T ss_pred CCccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHh----------CCceEeccHHHHhhcc
Confidence 345667777777777765332 457999999999999999999999 8999999999988544
Q ss_pred cccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhc-------CCCcEEEEEechHHHHhhh
Q 005511 114 KYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA-------RGELQCIGATTLDEYRKHI 186 (693)
Q Consensus 114 ~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~-------~~~v~vI~~t~~~~~~~~~ 186 (693)
.+..+..+...|..++.+.|+|||+-++|.+.-+.+.......+..+...+. ..++++|++++..+
T Consensus 472 --~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~----- 544 (953)
T KOG0736|consen 472 --ASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIE----- 544 (953)
T ss_pred --cchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccccc-----
Confidence 4677888899999999999999999999998744333333445555555554 35688899988877
Q ss_pred hcCHHHhccCC-ccccCCCCHHHHHHHHHHHHHhHhhhcCcccCh-HHHHHHHHhhhhhhcccCCchhhhhHHHHHhhHH
Q 005511 187 EKDPALERRFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTD-EALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRV 264 (693)
Q Consensus 187 ~l~~~l~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~~ll~~a~~~~ 264 (693)
.+++.+++-|. .|.++.|+.+||.+||+.+.... .+++ .....++..+.++.. ++...++...-..+
T Consensus 545 ~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~------~~n~~v~~k~~a~~t~gfs~-----~~L~~l~~~~s~~~ 613 (953)
T KOG0736|consen 545 DLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHL------PLNQDVNLKQLARKTSGFSF-----GDLEALVAHSSLAA 613 (953)
T ss_pred cCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhcc------ccchHHHHHHHHHhcCCCCH-----HHHHHHhcCchHHH
Confidence 78999999886 99999999999999999887642 2332 235556666666543 33333333221000
Q ss_pred HHhhcCCcHHHHHHHHHHHHHHHHHHHHhcCcchHHHhhhHHHHHHHHHHHHHHHhhhhhhhHhhhhcCCCCCccCHhHH
Q 005511 265 RLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDI 344 (693)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i 344 (693)
..+..... ... .+..+.+..++ .....++.+|+
T Consensus 614 ~~~i~~~~-l~g-------~~~~~~~~~~~---------------------------------------~~~~~l~~edf 646 (953)
T KOG0736|consen 614 KTRIKNKG-LAG-------GLQEEDEGELC---------------------------------------AAGFLLTEEDF 646 (953)
T ss_pred HHHHHhhc-ccc-------cchhccccccc---------------------------------------cccceecHHHH
Confidence 00000000 000 00000000000 00234445555
Q ss_pred HHHHHHH-------hCCC-ccCCCcchhHHHHHHHHHHhccccChHHHHHHHHHHHHHHhhcCCCC------CCCceEEE
Q 005511 345 QHIVSAW-------TGIP-VEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNP------NRPIASFI 410 (693)
Q Consensus 345 ~~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~------~~~~~~iL 410 (693)
.+.+.+. .|.| ..++. |.+|-|.++++..|.+.+... +.+| -+++.++|
T Consensus 647 ~kals~~~~~fs~aiGAPKIPnV~--------------WdDVGGLeevK~eIldTIqlP---L~hpeLfssglrkRSGIL 709 (953)
T KOG0736|consen 647 DKALSRLQKEFSDAIGAPKIPNVS--------------WDDVGGLEEVKTEILDTIQLP---LKHPELFSSGLRKRSGIL 709 (953)
T ss_pred HHHHHHHHHhhhhhcCCCCCCccc--------------hhcccCHHHHHHHHHHHhcCc---ccChhhhhccccccceeE
Confidence 4444321 2221 12233 344556666666666666442 1111 13345799
Q ss_pred EeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCCcCcCcc--chhhHHHHcCCCEEEEEccCc
Q 005511 411 FSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIE 488 (693)
Q Consensus 411 l~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid 488 (693)
||||||||||.+|+++|.++ .-.|+.+..+++.+. |+|++|. +.+|+.+|.+.+|||||||+|
T Consensus 710 LYGPPGTGKTLlAKAVATEc---sL~FlSVKGPELLNM------------YVGqSE~NVR~VFerAR~A~PCVIFFDELD 774 (953)
T KOG0736|consen 710 LYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELLNM------------YVGQSEENVREVFERARSAAPCVIFFDELD 774 (953)
T ss_pred EECCCCCchHHHHHHHHhhc---eeeEEeecCHHHHHH------------HhcchHHHHHHHHHHhhccCCeEEEecccc
Confidence 99999999999999999997 789999999999877 9999987 889999999999999999999
Q ss_pred ccCHH-------------HHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHH
Q 005511 489 KAHPD-------------VFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNR 555 (693)
Q Consensus 489 ~l~~~-------------~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~ 555 (693)
++.|. ++.+||..|++=. .+ +..++++|.+||.++-
T Consensus 775 SlAP~RG~sGDSGGVMDRVVSQLLAELDgls----~~---~s~~VFViGATNRPDL------------------------ 823 (953)
T KOG0736|consen 775 SLAPNRGRSGDSGGVMDRVVSQLLAELDGLS----DS---SSQDVFVIGATNRPDL------------------------ 823 (953)
T ss_pred ccCccCCCCCCccccHHHHHHHHHHHhhccc----CC---CCCceEEEecCCCccc------------------------
Confidence 99663 8899999998621 11 3457889999997764
Q ss_pred HHHHHHHHHhhcCchhHh--hccCcEEEcCCC-CHHHHHHHHHHHHHHHHHHHhcCCCeEEeCHHH-HHHHHHhccCCCC
Q 005511 556 IKSLVTEELKQYFRPEFL--NRLDEMIVFRQL-TKLEVKEIADIMLKEVFDRLKTKDIELQVTERF-RERVVEEGYNPSY 631 (693)
Q Consensus 556 l~~~~~~~l~~~~~~~l~--~R~~~~v~f~~l-~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~-~~~l~~~~~~~~~ 631 (693)
++|+|+ +|||..++..+- +.+....+++..- +++ .+++++ +..+++. .++++
T Consensus 824 ------------LDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlT----rkF-------kLdedVdL~eiAk~-cp~~~ 879 (953)
T KOG0736|consen 824 ------------LDPALLRPGRFDKLVYVGPNEDAESKLRVLEALT----RKF-------KLDEDVDLVEIAKK-CPPNM 879 (953)
T ss_pred ------------cChhhcCCCccceeEEecCCccHHHHHHHHHHHH----HHc-------cCCCCcCHHHHHhh-CCcCC
Confidence 789999 899999999988 4444555544322 222 355544 3456654 77888
Q ss_pred CcchHHHHHHHHHHHHHHHHHHh
Q 005511 632 GARPLRRAIMRLLEDSMAEKMLA 654 (693)
Q Consensus 632 g~r~l~~~i~~~i~~~l~~~~l~ 654 (693)
...++...+.+++..++.+.+-.
T Consensus 880 TGADlYsLCSdA~l~AikR~i~~ 902 (953)
T KOG0736|consen 880 TGADLYSLCSDAMLAAIKRTIHD 902 (953)
T ss_pred chhHHHHHHHHHHHHHHHHHHHH
Confidence 77789999999998888877653
No 13
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-36 Score=311.56 Aligned_cols=432 Identities=19% Similarity=0.249 Sum_probs=296.3
Q ss_pred CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCcccchHHHHHHHHHHHHHhCCCeEEEE
Q 005511 61 RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFI 140 (693)
Q Consensus 61 ~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~i 140 (693)
....++||+||+|+|||.|+++++++.... ..+++..++|+.+... + .......+..+|..+....|.|+++
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~------~~~hv~~v~Cs~l~~~-~-~e~iQk~l~~vfse~~~~~PSiIvL 500 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYSKD------LIAHVEIVSCSTLDGS-S-LEKIQKFLNNVFSEALWYAPSIIVL 500 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhccc------cceEEEEEechhccch-h-HHHHHHHHHHHHHHHHhhCCcEEEE
Confidence 345799999999999999999999998532 2467888899887632 2 4556677888889999999999999
Q ss_pred eccchhhhCCCCCChH------hHHHHHhhh----hcCC-CcEEEEEechHHHHhhhhcCHHHhc--cCC-ccccCCCCH
Q 005511 141 DEVHTLIGAGAAEGAI------DAANILKPS----LARG-ELQCIGATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSV 206 (693)
Q Consensus 141 DEid~l~~~~~~~~~~------~~~~~L~~~----l~~~-~v~vI~~t~~~~~~~~~~l~~~l~~--Rf~-~i~~~~p~~ 206 (693)
|++|.+....+.+.++ ....+|.++ ..++ .+.+|++.+... .++|.|.+ +|+ ++.+|.|..
T Consensus 501 Ddld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~q-----tl~~~L~s~~~Fq~~~~L~ap~~ 575 (952)
T KOG0735|consen 501 DDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQ-----TLNPLLVSPLLFQIVIALPAPAV 575 (952)
T ss_pred cchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhh-----hcChhhcCccceEEEEecCCcch
Confidence 9999998733322211 122223233 2333 467888887766 67888777 777 899999999
Q ss_pred HHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhhhhHHHHHhhHHHHhhcCCcHHHHHHHHHHHHHH
Q 005511 207 DETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQIT 286 (693)
Q Consensus 207 ~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (693)
.+|.+||+.++.+. ......+.++.++..+.||.. .+..-++++|...+.....+
T Consensus 576 ~~R~~IL~~~~s~~----~~~~~~~dLd~ls~~TEGy~~-----~DL~ifVeRai~~a~leris---------------- 630 (952)
T KOG0735|consen 576 TRRKEILTTIFSKN----LSDITMDDLDFLSVKTEGYLA-----TDLVIFVERAIHEAFLERIS---------------- 630 (952)
T ss_pred hHHHHHHHHHHHhh----hhhhhhHHHHHHHHhcCCccc-----hhHHHHHHHHHHHHHHHHhc----------------
Confidence 99999999988752 245566778889999999964 66777777776654311100
Q ss_pred HHHHHHhcCcchHHHhhhHHHHHHHHHHHHHHHhhhhhhhHhhhhcCCCCCccCHhHHHHHHHHHhCCCccCCCcchhHH
Q 005511 287 KEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDR 366 (693)
Q Consensus 287 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~ 366 (693)
.....++.+++...+..+.......+......
T Consensus 631 -----------------------------------------------~~~klltke~f~ksL~~F~P~aLR~ik~~k~t- 662 (952)
T KOG0735|consen 631 -----------------------------------------------NGPKLLTKELFEKSLKDFVPLALRGIKLVKST- 662 (952)
T ss_pred -----------------------------------------------cCcccchHHHHHHHHHhcChHHhhhccccccC-
Confidence 00113344444444332221111111000000
Q ss_pred HHHHHHHHhccccChHHHHHHHHHHHHHHhh----cCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeecc
Q 005511 367 LLKMEETLHKRVIGQDEAVKAISRAIRRARV----GLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDM 442 (693)
Q Consensus 367 ~~~~~~~l~~~v~g~~~~~~~l~~~~~~~~~----~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~ 442 (693)
..=+.++.|..++++.+.+.+.+... ....|-+-..++|||||||||||.+|-++|... +..|+.+..
T Consensus 663 -----gi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~---~~~fisvKG 734 (952)
T KOG0735|consen 663 -----GIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS---NLRFISVKG 734 (952)
T ss_pred -----CCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC---CeeEEEecC
Confidence 01134455666666666666654321 111222223469999999999999999999986 889999999
Q ss_pred ccccchhhhhhhcCCCCCCcCcCcc--chhhHHHHcCCCEEEEEccCcccCH-----------HHHHHHHHHhhcceeeC
Q 005511 443 SEFMERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKAHP-----------DVFNMMLQILEDGRLTD 509 (693)
Q Consensus 443 ~~~~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~l~~-----------~~~~~Ll~~le~~~~~~ 509 (693)
+++.++ |+|.+|. +.+|..++.+.+|||||||+|++.| .+.|+||+.|++-+-
T Consensus 735 PElL~K------------yIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Eg-- 800 (952)
T KOG0735|consen 735 PELLSK------------YIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEG-- 800 (952)
T ss_pred HHHHHH------------HhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccc--
Confidence 999877 9998886 8899999999999999999999954 599999999987431
Q ss_pred CCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHh--hccCcEEEcCCCCH
Q 005511 510 SKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFL--NRLDEMIVFRQLTK 587 (693)
Q Consensus 510 ~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~--~R~~~~v~f~~l~~ 587 (693)
...+.++++|..++- ++|+|+ +|+|..|..+.+++
T Consensus 801 -------l~GV~i~aaTsRpdl------------------------------------iDpALLRpGRlD~~v~C~~P~~ 837 (952)
T KOG0735|consen 801 -------LDGVYILAATSRPDL------------------------------------IDPALLRPGRLDKLVYCPLPDE 837 (952)
T ss_pred -------cceEEEEEecCCccc------------------------------------cCHhhcCCCccceeeeCCCCCc
Confidence 223445555543332 789998 79999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEeCHHH-HHHHHHhccCCCCCcchHHHHHHHHHHHHHHHHHHhcc
Q 005511 588 LEVKEIADIMLKEVFDRLKTKDIELQVTERF-RERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLARE 656 (693)
Q Consensus 588 ~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~-~~~l~~~~~~~~~g~r~l~~~i~~~i~~~l~~~~l~~~ 656 (693)
.+..+|++..-.. +..++++ ++.++. ...+|...+|+..+.++-..++.+++.+..
T Consensus 838 ~eRl~il~~ls~s-----------~~~~~~vdl~~~a~--~T~g~tgADlq~ll~~A~l~avh~~l~~~~ 894 (952)
T KOG0735|consen 838 PERLEILQVLSNS-----------LLKDTDVDLECLAQ--KTDGFTGADLQSLLYNAQLAAVHEILKRED 894 (952)
T ss_pred HHHHHHHHHHhhc-----------cCCccccchHHHhh--hcCCCchhhHHHHHHHHHHHHHHHHHHhcC
Confidence 9999998654332 2233333 456665 344455668999999888888877776543
No 14
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=100.00 E-value=5.3e-31 Score=274.53 Aligned_cols=283 Identities=26% Similarity=0.399 Sum_probs=218.4
Q ss_pred HHHHHHHHhccccChHHHHHHHHHHHHHHhhcCCC----CC-----CCceEEEEeccCCCcHHHHHHHHHHHhcCCCcce
Q 005511 367 LLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKN----PN-----RPIASFIFSGPTGVGKSELAKALAAYYFGSEEAM 437 (693)
Q Consensus 367 ~~~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~----~~-----~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~ 437 (693)
..+++..|.+.|+||+.+++.+..++..++.+... +. .+.+++||+||||||||++|+++|+.+ +.+|
T Consensus 68 p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l---~~pf 144 (413)
T TIGR00382 68 PKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL---NVPF 144 (413)
T ss_pred HHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc---CCCe
Confidence 45678889999999999999999988665554432 11 124689999999999999999999987 6788
Q ss_pred eeeccccccchhhhhhhcCCCCCCcCcCccchhhHHHH-------cCCCEEEEEccCcccCH--------------HHHH
Q 005511 438 IRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVR-------RRPYTVVLFDEIEKAHP--------------DVFN 496 (693)
Q Consensus 438 ~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~-------~~~~~vl~iDEid~l~~--------------~~~~ 496 (693)
..++++.+. +++|+|.+....+...++ .+.++||||||+|++++ .+|+
T Consensus 145 ~~~da~~L~-----------~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~ 213 (413)
T TIGR00382 145 AIADATTLT-----------EAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQ 213 (413)
T ss_pred EEechhhcc-----------ccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHH
Confidence 888876553 246888875555554443 34568999999999987 6999
Q ss_pred HHHHHhhcceeeC---CCCCeeecCCeEEEEecCC---------Chhhh-hh--cccccccccCcCccc-chHHHHHHHH
Q 005511 497 MMLQILEDGRLTD---SKGRTVDFKNTLLIMTSNV---------GSSVI-EK--GGRRIGFDLDYDEKD-SSYNRIKSLV 560 (693)
Q Consensus 497 ~Ll~~le~~~~~~---~~~~~~~~~~~~iI~~tn~---------~~~~i-~~--~~~~~~f~~~~~~~~-~~~~~l~~~~ 560 (693)
.||++|| |.+++ .+|+.+++.++++|.|+|. +.+.+ .. ....+||..+..... .....++...
T Consensus 214 ~LL~iLe-G~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~ 292 (413)
T TIGR00382 214 ALLKIIE-GTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVE 292 (413)
T ss_pred HHHHHhh-ccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHH
Confidence 9999996 77654 5688889999999999998 43333 21 234578864322111 1124456667
Q ss_pred HHHHhhc-CchhHhhccCcEEEcCCCCHHHHHHHHHHH----HHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcch
Q 005511 561 TEELKQY-FRPEFLNRLDEMIVFRQLTKLEVKEIADIM----LKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARP 635 (693)
Q Consensus 561 ~~~l~~~-~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~----l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~ 635 (693)
.+++.++ |.|||++|+|.+++|.||+.+++.+|+... ++++.+.+...++.+.++++++++|++.+|.+.+|||+
T Consensus 293 ~~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~ 372 (413)
T TIGR00382 293 PEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARG 372 (413)
T ss_pred HHHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchH
Confidence 7788776 999999999999999999999999999874 55666666677999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCEEEEEE
Q 005511 636 LRRAIMRLLEDSMAEKMLAREIKEGDSVIVDV 667 (693)
Q Consensus 636 l~~~i~~~i~~~l~~~~l~~~~~~~~~~~v~~ 667 (693)
|++.|++.+...+++..-. ++..+++|+-
T Consensus 373 Lr~iie~~l~~~m~e~p~~---~~~~~v~i~~ 401 (413)
T TIGR00382 373 LRSIVEGLLLDVMFDLPSL---EDLEKVVITK 401 (413)
T ss_pred HHHHHHHhhHHHHhhCCCC---CCCcEEEECH
Confidence 9999999999999887543 2234455543
No 15
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.98 E-value=1.1e-30 Score=274.50 Aligned_cols=273 Identities=27% Similarity=0.398 Sum_probs=209.0
Q ss_pred HHHHHHHHhccccChHHHHHHHHHHHHHHhhcCCC-------CCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceee
Q 005511 367 LLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKN-------PNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIR 439 (693)
Q Consensus 367 ~~~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~-------~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~ 439 (693)
..++...|.+.|+||+.+++.+..++..+..+... ...+..++||+||||||||++|+++|+.+ +.+|+.
T Consensus 62 p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l---~~pf~~ 138 (412)
T PRK05342 62 PKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL---DVPFAI 138 (412)
T ss_pred HHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh---CCCcee
Confidence 45667788889999999999998887554333321 12345689999999999999999999998 789999
Q ss_pred eccccccchhhhhhhcCCCCCCcCcCccchhhHH-------HHcCCCEEEEEccCcccCH--------------HHHHHH
Q 005511 440 LDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEA-------VRRRPYTVVLFDEIEKAHP--------------DVFNMM 498 (693)
Q Consensus 440 ~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~-------~~~~~~~vl~iDEid~l~~--------------~~~~~L 498 (693)
++++.+.. .+|+|.+....+... ++++.++||||||+|++++ .+|+.|
T Consensus 139 id~~~l~~-----------~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~L 207 (412)
T PRK05342 139 ADATTLTE-----------AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQAL 207 (412)
T ss_pred cchhhccc-----------CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHH
Confidence 99987642 458887654444333 3346789999999999975 399999
Q ss_pred HHHhhcceee--CCCCCeeecCCeEEEEecCC---------Chh-hhhh--cccccccccCcCcccc---hHHHHHHHHH
Q 005511 499 LQILEDGRLT--DSKGRTVDFKNTLLIMTSNV---------GSS-VIEK--GGRRIGFDLDYDEKDS---SYNRIKSLVT 561 (693)
Q Consensus 499 l~~le~~~~~--~~~~~~~~~~~~~iI~~tn~---------~~~-~i~~--~~~~~~f~~~~~~~~~---~~~~l~~~~~ 561 (693)
|++||++... +.+|+..+..++++|.|+|. +.. .+.. ....+||..+...... ....++.+..
T Consensus 208 L~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~ 287 (412)
T PRK05342 208 LKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEP 287 (412)
T ss_pred HHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCH
Confidence 9999865543 34566666666666666665 222 2221 2356888654322111 2344555666
Q ss_pred HHHhhc-CchhHhhccCcEEEcCCCCHHHHHHHHH----HHHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchH
Q 005511 562 EELKQY-FRPEFLNRLDEMIVFRQLTKLEVKEIAD----IMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPL 636 (693)
Q Consensus 562 ~~l~~~-~~~~l~~R~~~~v~f~~l~~~~~~~i~~----~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l 636 (693)
+++.++ |.|||++|+|.+++|.||+.+++.+|+. ..++++.+.+...++.+.++++++++|++.+|.+.+|+|+|
T Consensus 288 ~dL~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~L 367 (412)
T PRK05342 288 EDLIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGL 367 (412)
T ss_pred HHHHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchH
Confidence 777776 8999999999999999999999999997 46667777777889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005511 637 RRAIMRLLEDSMAEKML 653 (693)
Q Consensus 637 ~~~i~~~i~~~l~~~~l 653 (693)
++.|++.+...+++...
T Consensus 368 rriie~~l~~~~~~~p~ 384 (412)
T PRK05342 368 RSILEEILLDVMFELPS 384 (412)
T ss_pred HHHHHHHhHHHHHhccc
Confidence 99999999999987654
No 16
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.7e-29 Score=254.88 Aligned_cols=409 Identities=21% Similarity=0.292 Sum_probs=259.8
Q ss_pred ccCCHHHHHHHHH--------------HHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEecccc
Q 005511 44 VVGRQPQIERVVQ--------------ILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLL 109 (693)
Q Consensus 44 iiG~~~~~~~l~~--------------~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l 109 (693)
|-|.+.+...+.+ .+....-.++|||||||||||.+||.+.+.|+.. +--.++...+
T Consensus 223 IGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNAr---------ePKIVNGPeI 293 (744)
T KOG0741|consen 223 IGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAR---------EPKIVNGPEI 293 (744)
T ss_pred cccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCC---------CCcccCcHHH
Confidence 5666666665333 3344556789999999999999999999998542 2223555555
Q ss_pred ccCCcccchHHHHHHHHHHHHHhC--------CCeEEEEeccchhhhCCCCCC-----hHhHHHHHhhhhcC----CCcE
Q 005511 110 VAGTKYRGEFEERLKKLMEEIKQS--------DEIILFIDEVHTLIGAGAAEG-----AIDAANILKPSLAR----GELQ 172 (693)
Q Consensus 110 ~~~~~~~g~~~~~l~~~~~~~~~~--------~~~vL~iDEid~l~~~~~~~~-----~~~~~~~L~~~l~~----~~v~ 172 (693)
. .+|+|+.+..++.+|..|.+. .--|+++||+|.+|..+.+.+ +..+.+.|+.-++. +.+.
T Consensus 294 L--~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNIL 371 (744)
T KOG0741|consen 294 L--NKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNIL 371 (744)
T ss_pred H--HHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEE
Confidence 5 678999999999999988531 224899999999997654432 34466666665542 4699
Q ss_pred EEEEechHHHHhhhhcCHHHhc--cCC-ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCC
Q 005511 173 CIGATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFL 249 (693)
Q Consensus 173 vI~~t~~~~~~~~~~l~~~l~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 249 (693)
||+.||+.+ -+|++|+| ||. .+++..|++.-|.+|++...+++.. ++.--++-.+..+|.++..|.+
T Consensus 372 VIGMTNR~D-----lIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre-~~~l~~dVdl~elA~lTKNfSG---- 441 (744)
T KOG0741|consen 372 VIGMTNRKD-----LIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRE-NNKLSADVDLKELAALTKNFSG---- 441 (744)
T ss_pred EEeccCchh-----hHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhh-cCCCCCCcCHHHHHHHhcCCch----
Confidence 999999998 48999999 998 8999999999999999998887643 2222234458889999988865
Q ss_pred chhhhhHHHHHhhHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHhcCcchHHHhhhHHHHHHHHHHHHHHHhhhhhhhHhh
Q 005511 250 PDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAE 329 (693)
Q Consensus 250 ~~~~~~ll~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (693)
.....+++.|.+.+.-|..........-...
T Consensus 442 -AEleglVksA~S~A~nR~vk~~~~~~~~~~~------------------------------------------------ 472 (744)
T KOG0741|consen 442 -AELEGLVKSAQSFAMNRHVKAGGKVEVDPVA------------------------------------------------ 472 (744)
T ss_pred -hHHHHHHHHHHHHHHHhhhccCcceecCchh------------------------------------------------
Confidence 6778888888887766654332110000000
Q ss_pred hhcCCCCCccCHhHHHHHHHHHhCCCccCCCcchhHHHHHHHHHHhcc-ccChHHHHHHHHHHHHHHhhcCCCCCCCceE
Q 005511 330 TEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKR-VIGQDEAVKAISRAIRRARVGLKNPNRPIAS 408 (693)
Q Consensus 330 ~~~~~~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 408 (693)
.....|+..|+-.++... .|......++ +...+... +.+-+.+.+-+.+.......-....+.|..+
T Consensus 473 ----~e~lkV~r~DFl~aL~dV--kPAFG~see~------l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvS 540 (744)
T KOG0741|consen 473 ----IENLKVTRGDFLNALEDV--KPAFGISEED------LERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVS 540 (744)
T ss_pred ----hhheeecHHHHHHHHHhc--CcccCCCHHH------HHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceE
Confidence 002344555555544421 1222222221 12222221 2222222222222222121111222456778
Q ss_pred EEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCCcCcCcc------chhhHHHHcCCCEEE
Q 005511 409 FIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG------GQLTEAVRRRPYTVV 482 (693)
Q Consensus 409 iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~------~~l~~~~~~~~~~vl 482 (693)
+||.||||+|||+||--+|... +.||+.+--++- .+|.+|. ..+|+-+.+++-+||
T Consensus 541 vLl~Gp~~sGKTaLAA~iA~~S---~FPFvKiiSpe~---------------miG~sEsaKc~~i~k~F~DAYkS~lsii 602 (744)
T KOG0741|consen 541 VLLEGPPGSGKTALAAKIALSS---DFPFVKIISPED---------------MIGLSESAKCAHIKKIFEDAYKSPLSII 602 (744)
T ss_pred EEEecCCCCChHHHHHHHHhhc---CCCeEEEeChHH---------------ccCccHHHHHHHHHHHHHHhhcCcceEE
Confidence 9999999999999999999885 889987643322 3344432 445666777888999
Q ss_pred EEccCccc------CHHH----HHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccch
Q 005511 483 LFDEIEKA------HPDV----FNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSS 552 (693)
Q Consensus 483 ~iDEid~l------~~~~----~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~ 552 (693)
++|+++++ .|.. +.+|+-++... .+..+-++|++|+..-..+.
T Consensus 603 vvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~---------ppkg~kLli~~TTS~~~vL~------------------ 655 (744)
T KOG0741|consen 603 VVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQ---------PPKGRKLLIFGTTSRREVLQ------------------ 655 (744)
T ss_pred EEcchhhhhcccccCchhhHHHHHHHHHHhccC---------CCCCceEEEEecccHHHHHH------------------
Confidence 99999998 4444 44444455431 12224456666654333221
Q ss_pred HHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCH-HHHHHHHH
Q 005511 553 YNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK-LEVKEIAD 595 (693)
Q Consensus 553 ~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~-~~~~~i~~ 595 (693)
.=++++.|+..+..+.++. +++.+++.
T Consensus 656 ----------------~m~i~~~F~~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 656 ----------------EMGILDCFSSTIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred ----------------HcCHHHhhhheeecCccCchHHHHHHHH
Confidence 1256788888899998866 67766664
No 17
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.7e-27 Score=262.67 Aligned_cols=426 Identities=25% Similarity=0.301 Sum_probs=284.4
Q ss_pred HHHHHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCcccchHHHHHHHHHHHHHhC
Q 005511 54 VVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQS 133 (693)
Q Consensus 54 l~~~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~ 133 (693)
+...+...++.+++++||||+|||+++++++.. .. . . ..++..... .++.+..+..+..++..+...
T Consensus 9 ~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~--------~-~-~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~ 75 (494)
T COG0464 9 LFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GA--------E-F-LSINGPEIL--SKYVGESELRLRELFEEAEKL 75 (494)
T ss_pred HHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cC--------c-c-cccCcchhh--hhhhhHHHHHHHHHHHHHHHh
Confidence 445566788999999999999999999999987 11 1 1 333333333 556788888999999999998
Q ss_pred CCeEEEEeccchhhhCCCCCC---hHhHHHHHhhhhc---CCCcEEEEEechHHHHhhhhcCHHHhc--cCC-ccccCCC
Q 005511 134 DEIILFIDEVHTLIGAGAAEG---AIDAANILKPSLA---RGELQCIGATTLDEYRKHIEKDPALER--RFQ-PVKVPEP 204 (693)
Q Consensus 134 ~~~vL~iDEid~l~~~~~~~~---~~~~~~~L~~~l~---~~~v~vI~~t~~~~~~~~~~l~~~l~~--Rf~-~i~~~~p 204 (693)
.|+++++||+|.+.+...... .......+...+. .+.+.+++.++.+. .+++++++ ||. .+.+..|
T Consensus 76 ~~~ii~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~~~~v~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~ 150 (494)
T COG0464 76 APSIIFIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLKRGQVIVIGATNRPD-----GLDPAKRRPGRFDREIEVNLP 150 (494)
T ss_pred CCCeEeechhhhcccCccccccchhhHHHHHHHHhcccccCCceEEEeecCCcc-----ccChhHhCccccceeeecCCC
Confidence 889999999999987655511 1223333333332 33477777777776 67888877 887 8999999
Q ss_pred CHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhhhhHHHHHhhHHHHhhcCCcHHHHHHHHHHHH
Q 005511 205 SVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQ 284 (693)
Q Consensus 205 ~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~a~~~~~~~~~~~~~~~~~~~~~~~~ 284 (693)
+...+.+|+........ .-.+.....++..+.++.. .+...++..+......+..
T Consensus 151 ~~~~~~ei~~~~~~~~~-----~~~~~~~~~~a~~~~~~~~-----~~~~~l~~~~~~~~~~r~~--------------- 205 (494)
T COG0464 151 DEAGRLEILQIHTRLMF-----LGPPGTGKTLAARTVGKSG-----ADLGALAKEAALRELRRAI--------------- 205 (494)
T ss_pred CHHHHHHHHHHHHhcCC-----CcccccHHHHHHhcCCccH-----HHHHHHHHHHHHHHHHhhh---------------
Confidence 99999888886654321 1114566677777777754 4444444444433322210
Q ss_pred HHHHHHHHhcCcchHHHhhhHHHHHHHHHHHHHHHhhhhhhhHhhhhcCCCCCccCHhHHHHHHHHHhC-----CCccCC
Q 005511 285 ITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTG-----IPVEKV 359 (693)
Q Consensus 285 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~-----~~~~~~ 359 (693)
........++.+++...+....+ .....+
T Consensus 206 ----------------------------------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v 239 (494)
T COG0464 206 ----------------------------------------------DLVGEYIGVTEDDFEEALKKVLPSRGVLFEDEDV 239 (494)
T ss_pred ----------------------------------------------ccCcccccccHHHHHHHHHhcCcccccccCCCCc
Confidence 00000222334444444443322 122233
Q ss_pred CcchhHHHHHHHHHHhccccChHHHHHHHHHHHHHHhhcCC----CCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCc
Q 005511 360 STDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLK----NPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE 435 (693)
Q Consensus 360 ~~~~~~~~~~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~----~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~ 435 (693)
.+.+. .|.+.+++.+.+.+........ ...++..++||+||||||||++|+++|..+ +.
T Consensus 240 ~~~di--------------ggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~---~~ 302 (494)
T COG0464 240 TLDDI--------------GGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES---RS 302 (494)
T ss_pred ceehh--------------hcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC---CC
Confidence 33333 3334444444444432211000 011222369999999999999999999986 88
Q ss_pred ceeeeccccccchhhhhhhcCCCCCCcCcCcc--chhhHHHHcCCCEEEEEccCcccC-----------HHHHHHHHHHh
Q 005511 436 AMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKAH-----------PDVFNMMLQIL 502 (693)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~l~-----------~~~~~~Ll~~l 502 (693)
+|+.++.+++.++ |+|++++ +.+|..+++..+|||||||+|++. ..+++.||..|
T Consensus 303 ~fi~v~~~~l~sk------------~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~ 370 (494)
T COG0464 303 RFISVKGSELLSK------------WVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTEL 370 (494)
T ss_pred eEEEeeCHHHhcc------------ccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHh
Confidence 9999999988765 9999987 788899998889999999999981 26899999999
Q ss_pred hcceeeCCCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhh--ccCcEE
Q 005511 503 EDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLN--RLDEMI 580 (693)
Q Consensus 503 e~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~--R~~~~v 580 (693)
+.-. ...++++|.+||.... ++|++++ |||.++
T Consensus 371 d~~e---------~~~~v~vi~aTN~p~~------------------------------------ld~a~lR~gRfd~~i 405 (494)
T COG0464 371 DGIE---------KAEGVLVIAATNRPDD------------------------------------LDPALLRPGRFDRLI 405 (494)
T ss_pred cCCC---------ccCceEEEecCCCccc------------------------------------cCHhhcccCccceEe
Confidence 7532 3456889999997765 7899998 999999
Q ss_pred EcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHHHHHHHHHHHH
Q 005511 581 VFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKM 652 (693)
Q Consensus 581 ~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~~~l~~~~ 652 (693)
.|++++.++..+|+..++...... -..+-..+.+++ ....|...++...++++...++.+..
T Consensus 406 ~v~~pd~~~r~~i~~~~~~~~~~~--------~~~~~~~~~l~~--~t~~~sgadi~~i~~ea~~~~~~~~~ 467 (494)
T COG0464 406 YVPLPDLEERLEIFKIHLRDKKPP--------LAEDVDLEELAE--ITEGYSGADIAALVREAALEALREAR 467 (494)
T ss_pred ecCCCCHHHHHHHHHHHhcccCCc--------chhhhhHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999998888642210 112223344444 23335566788888888877776654
No 18
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.5e-28 Score=236.32 Aligned_cols=198 Identities=26% Similarity=0.392 Sum_probs=171.2
Q ss_pred CCCCccCCHHHHHHHHHHH-------------hcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEec
Q 005511 40 KLDPVVGRQPQIERVVQIL-------------GRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM 106 (693)
Q Consensus 40 ~~~~iiG~~~~~~~l~~~l-------------~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 106 (693)
+++++-|.+++++.+++.+ +..+|.+||||||||||||.||+++|++. ++.++.+..
T Consensus 149 tY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T----------~AtFIrvvg 218 (406)
T COG1222 149 TYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT----------DATFIRVVG 218 (406)
T ss_pred ChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc----------CceEEEecc
Confidence 7889999999999988864 45788999999999999999999999987 889999999
Q ss_pred cccccCCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCC---CCCChHhHHHHHhhhhc-------CCCcEEEEE
Q 005511 107 GLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAG---AAEGAIDAANILKPSLA-------RGELQCIGA 176 (693)
Q Consensus 107 ~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~---~~~~~~~~~~~L~~~l~-------~~~v~vI~~ 176 (693)
+.+. .+|.|+....++.+|..|+...|+|+||||||.+...+ ...++.+++..+.++|. .+.+.||+|
T Consensus 219 SElV--qKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~A 296 (406)
T COG1222 219 SELV--QKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMA 296 (406)
T ss_pred HHHH--HHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEe
Confidence 9998 78999999999999999999999999999999997643 33467788888888874 577999999
Q ss_pred echHHHHhhhhcCHHHhc--cCC-ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhh
Q 005511 177 TTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKA 253 (693)
Q Consensus 177 t~~~~~~~~~~l~~~l~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 253 (693)
||+++ -+||+|+| ||+ .|+||.|+.+.|.+|++.+.+++....++ .++.+++.+.++.+ .+.
T Consensus 297 TNR~D-----~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dv-----d~e~la~~~~g~sG-----Adl 361 (406)
T COG1222 297 TNRPD-----ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDV-----DLELLARLTEGFSG-----ADL 361 (406)
T ss_pred cCCcc-----ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCc-----CHHHHHHhcCCCch-----HHH
Confidence 99998 69999999 998 89999999999999999998875433333 36788888888765 778
Q ss_pred hhHHHHHhhHH
Q 005511 254 IDLIDEAGSRV 264 (693)
Q Consensus 254 ~~ll~~a~~~~ 264 (693)
..+|.+|...+
T Consensus 362 kaictEAGm~A 372 (406)
T COG1222 362 KAICTEAGMFA 372 (406)
T ss_pred HHHHHHHhHHH
Confidence 88888887654
No 19
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.4e-27 Score=226.22 Aligned_cols=286 Identities=27% Similarity=0.394 Sum_probs=221.8
Q ss_pred HHHHHHHHHHhccccChHHHHHHHHHHHHHHhhcCCCC------CCCceEEEEeccCCCcHHHHHHHHHHHhcCCCccee
Q 005511 365 DRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNP------NRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMI 438 (693)
Q Consensus 365 ~~~~~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~------~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~ 438 (693)
....+++..|.+.++||+.+++.+.-++..++..+... .-.+.++||.||+|||||.+|+.||+.+ +.||.
T Consensus 50 PtP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~L---nVPFa 126 (408)
T COG1219 50 PTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKIL---NVPFA 126 (408)
T ss_pred CChHHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHh---CCCee
Confidence 33567888999999999999998887776655443321 1235689999999999999999999999 89999
Q ss_pred eeccccccchhhhhhhcCCCCCCcCcCccchhhHHHHc-------CCCEEEEEccCcccC--------------HHHHHH
Q 005511 439 RLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRR-------RPYTVVLFDEIEKAH--------------PDVFNM 497 (693)
Q Consensus 439 ~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~-------~~~~vl~iDEid~l~--------------~~~~~~ 497 (693)
.-|+..+.+ +||+|++....+...+++ +..||+||||||++. ..+|.+
T Consensus 127 iADATtLTE-----------AGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQA 195 (408)
T COG1219 127 IADATTLTE-----------AGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQA 195 (408)
T ss_pred eccccchhh-----------ccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHH
Confidence 999888763 689999987777666655 446899999999983 349999
Q ss_pred HHHHhhccee--eCCCCCe--------eecCCeEEEEecCCC--hhhhh--hcccccccccCcCc---ccchHHHHHHHH
Q 005511 498 MLQILEDGRL--TDSKGRT--------VDFKNTLLIMTSNVG--SSVIE--KGGRRIGFDLDYDE---KDSSYNRIKSLV 560 (693)
Q Consensus 498 Ll~~le~~~~--~~~~~~~--------~~~~~~~iI~~tn~~--~~~i~--~~~~~~~f~~~~~~---~~~~~~~l~~~~ 560 (693)
||+++|+... ++.+|+. ++..|++||+..-+. ..+|. .....+||..+... .......+....
T Consensus 196 LLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~ve 275 (408)
T COG1219 196 LLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVE 275 (408)
T ss_pred HHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcC
Confidence 9999997553 3345665 555677777765542 23333 34567899877543 233345566667
Q ss_pred HHHHhhc-CchhHhhccCcEEEcCCCCHHHHHHHH----HHHHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcch
Q 005511 561 TEELKQY-FRPEFLNRLDEMIVFRQLTKLEVKEIA----DIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARP 635 (693)
Q Consensus 561 ~~~l~~~-~~~~l~~R~~~~v~f~~l~~~~~~~i~----~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~ 635 (693)
.+++.++ +-|+|++|+..+..+.+|+.+++.+|+ +..++++..-|...++.+.|+++++..+++++.....|+|.
T Consensus 276 peDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTGARG 355 (408)
T COG1219 276 PEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTGARG 355 (408)
T ss_pred hHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHHHHhccchhH
Confidence 7777765 679999999999999999999999999 55677888888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCEEEEEE
Q 005511 636 LRRAIMRLLEDSMAEKMLAREIKEGDSVIVDV 667 (693)
Q Consensus 636 l~~~i~~~i~~~l~~~~l~~~~~~~~~~~v~~ 667 (693)
||..++..+.+.|++..-. +.-.+++|+-
T Consensus 356 LRsI~E~~lld~MfelPs~---~~v~~v~I~~ 384 (408)
T COG1219 356 LRSIIEELLLDVMFELPSL---EDVEKVVITE 384 (408)
T ss_pred HHHHHHHHHHHHHhhCCCC---CCceEEEEeH
Confidence 9999999999988886443 2234566553
No 20
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.94 E-value=1.4e-25 Score=233.89 Aligned_cols=229 Identities=18% Similarity=0.258 Sum_probs=191.2
Q ss_pred hccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhh
Q 005511 375 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 454 (693)
Q Consensus 375 ~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l 454 (693)
...++|++.++..+.+.+.+.... ..+||++|++||||..+|++|++...+.+.||+.+||+.+....-.+.|
T Consensus 140 ~~~liG~S~am~~l~~~i~kvA~s-------~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESEL 212 (464)
T COG2204 140 GGELVGESPAMQQLRRLIAKVAPS-------DASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESEL 212 (464)
T ss_pred cCCceecCHHHHHHHHHHHHHhCC-------CCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHh
Confidence 467899999999999999887422 2359999999999999999999999888999999999999988888899
Q ss_pred cCCCCC-CcCcCccchhhHHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhh
Q 005511 455 IGSPPG-YVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVI 533 (693)
Q Consensus 455 ~g~~~~-~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i 533 (693)
||+..| ++|....+ .+.++.+.+|+||+|||..++.++|..||++|+++++...+|......|++||++||..-.
T Consensus 213 FGhekGAFTGA~~~r--~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~-- 288 (464)
T COG2204 213 FGHEKGAFTGAITRR--IGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLE-- 288 (464)
T ss_pred hcccccCcCCccccc--CcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHH--
Confidence 999876 55654432 2667789999999999999999999999999999999988887777779999999995433
Q ss_pred hhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcE-EEcCCC--CHHHHHHHHHHHHHHHHHHHhcCCC
Q 005511 534 EKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEM-IVFRQL--TKLEVKEIADIMLKEVFDRLKTKDI 610 (693)
Q Consensus 534 ~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~-v~f~~l--~~~~~~~i~~~~l~~~~~~~~~~~~ 610 (693)
...-.+.|.++|++|++.+ +..||| ..+|+.-+++.+++++..+....-
T Consensus 289 ---------------------------~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~- 340 (464)
T COG2204 289 ---------------------------EEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPP- 340 (464)
T ss_pred ---------------------------HHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCC-
Confidence 2222344999999999654 777788 779999999999999888774222
Q ss_pred eEEeCHHHHHHHHHhccCCCCCcchHHHHHHHHHH
Q 005511 611 ELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLE 645 (693)
Q Consensus 611 ~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~ 645 (693)
..+++++++.|..+.|++| +|+|+|++++.+.
T Consensus 341 -~~~s~~a~~~L~~y~WPGN--VREL~N~ver~~i 372 (464)
T COG2204 341 -KGFSPEALAALLAYDWPGN--VRELENVVERAVI 372 (464)
T ss_pred -CCCCHHHHHHHHhCCCChH--HHHHHHHHHHHHh
Confidence 3599999999999666665 9999999998874
No 21
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.94 E-value=1.6e-25 Score=208.62 Aligned_cols=205 Identities=22% Similarity=0.336 Sum_probs=161.7
Q ss_pred hhhhhcCCCCCccCCHHHHHHH---HHHHh------cCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEE
Q 005511 33 TKLAEEGKLDPVVGRQPQIERV---VQILG------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVIT 103 (693)
Q Consensus 33 ~~~~~~~~~~~iiG~~~~~~~l---~~~l~------~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 103 (693)
.+..+..+||++|||++.++.. .+.|. ...|+|||||||||||||++|+++|.+. ..+++.
T Consensus 112 ~e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~----------kvp~l~ 181 (368)
T COG1223 112 REIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA----------KVPLLL 181 (368)
T ss_pred hhhhccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc----------CCceEE
Confidence 3555666899999999998874 33443 3567999999999999999999999987 788999
Q ss_pred EeccccccCCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCC----ChHhHHHHHhhhhc----CCCcEEEE
Q 005511 104 LDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAE----GAIDAANILKPSLA----RGELQCIG 175 (693)
Q Consensus 104 ~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~----~~~~~~~~L~~~l~----~~~v~vI~ 175 (693)
+....+. ..++|+...++++++..+++..|||+||||+|.+.-++..+ .-.+..|+|+..|+ +.+++.|+
T Consensus 182 vkat~li--GehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 182 VKATELI--GEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred echHHHH--HHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 9988887 56789999999999999999999999999999996544322 12456677776664 56799999
Q ss_pred EechHHHHhhhhcCHHHhccCC-ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhhh
Q 005511 176 ATTLDEYRKHIEKDPALERRFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAI 254 (693)
Q Consensus 176 ~t~~~~~~~~~~l~~~l~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 254 (693)
+||.++ -+|+++++||. .|+|..|+.++|..|++...+.++ +.+.-. ++.++..+.|+.+ ++..
T Consensus 260 aTN~p~-----~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~P----lpv~~~-~~~~~~~t~g~Sg-----Rdik 324 (368)
T COG1223 260 ATNRPE-----LLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFP----LPVDAD-LRYLAAKTKGMSG-----RDIK 324 (368)
T ss_pred ecCChh-----hcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCC----CccccC-HHHHHHHhCCCCc-----hhHH
Confidence 999998 58999999998 999999999999999999988753 333322 6778888877754 3332
Q ss_pred -hHHHHHhhHH
Q 005511 255 -DLIDEAGSRV 264 (693)
Q Consensus 255 -~ll~~a~~~~ 264 (693)
.+|..|...+
T Consensus 325 ekvlK~aLh~A 335 (368)
T COG1223 325 EKVLKTALHRA 335 (368)
T ss_pred HHHHHHHHHHH
Confidence 3445554443
No 22
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.94 E-value=3.3e-24 Score=246.31 Aligned_cols=298 Identities=21% Similarity=0.294 Sum_probs=220.8
Q ss_pred hHHHHHHHHHhCCCccCCCcchhHHHHHHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHH
Q 005511 342 VDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSE 421 (693)
Q Consensus 342 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~ 421 (693)
..+...+..++++|+.+.+.+ ..++...++.|.+.++|++.+++.+.+.+......... ++ .+++|+||||||||+
T Consensus 287 ~~~~~yl~~~~~ip~~~~~~~-~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~~~~--~~-~~lll~GppG~GKT~ 362 (775)
T TIGR00763 287 TVTRNYLDWLTDLPWGKYSKE-NLDLKRAKEILDEDHYGLKKVKERILEYLAVQKLRGKM--KG-PILCLVGPPGVGKTS 362 (775)
T ss_pred HHHHHHHHHHHCCCCcccccc-hhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCC--CC-ceEEEECCCCCCHHH
Confidence 345677888999999987776 56688899999999999999999999877654322111 11 269999999999999
Q ss_pred HHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCCcCcCccchhhHHHHcC--CCEEEEEccCcccCHH----HH
Q 005511 422 LAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRR--PYTVVLFDEIEKAHPD----VF 495 (693)
Q Consensus 422 lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~--~~~vl~iDEid~l~~~----~~ 495 (693)
+|++||+.+ +.+++.++++...+ ..++.|+...|+|...+. +.+.+..+ .+.||||||||++.+. ..
T Consensus 363 lAk~iA~~l---~~~~~~i~~~~~~~---~~~i~g~~~~~~g~~~g~-i~~~l~~~~~~~~villDEidk~~~~~~~~~~ 435 (775)
T TIGR00763 363 LGKSIAKAL---NRKFVRFSLGGVRD---EAEIRGHRRTYVGAMPGR-IIQGLKKAKTKNPLFLLDEIDKIGSSFRGDPA 435 (775)
T ss_pred HHHHHHHHh---cCCeEEEeCCCccc---HHHHcCCCCceeCCCCch-HHHHHHHhCcCCCEEEEechhhcCCccCCCHH
Confidence 999999998 77899998876542 455667777888877643 33333322 3459999999999764 45
Q ss_pred HHHHHHhhc---ceeeCCC-CCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchh
Q 005511 496 NMMLQILED---GRLTDSK-GRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPE 571 (693)
Q Consensus 496 ~~Ll~~le~---~~~~~~~-~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 571 (693)
+.|+++|+. +.+.+.. +..++.++++||+|||.... ++++
T Consensus 436 ~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~------------------------------------i~~~ 479 (775)
T TIGR00763 436 SALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDT------------------------------------IPRP 479 (775)
T ss_pred HHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchh------------------------------------CCHH
Confidence 899999984 5555543 56778889999999996543 8899
Q ss_pred HhhccCcEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCC---CeEEeCHHHHHHHHHhccCCCCCcchHHHHHHHHHHHHH
Q 005511 572 FLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKD---IELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSM 648 (693)
Q Consensus 572 l~~R~~~~v~f~~l~~~~~~~i~~~~l~~~~~~~~~~~---~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~~~l 648 (693)
|++|| .++.|++|+.++..+|+++++.... ....+ ..+.++++++.+|++ +|...+|+|+|++.+++.+....
T Consensus 480 L~~R~-~vi~~~~~~~~e~~~I~~~~l~~~~--~~~~~l~~~~~~~~~~~l~~i~~-~~~~e~g~R~l~r~i~~~~~~~~ 555 (775)
T TIGR00763 480 LLDRM-EVIELSGYTEEEKLEIAKKYLIPKA--LEDHGLKPDELKITDEALLLLIK-YYTREAGVRNLERQIEKICRKAA 555 (775)
T ss_pred HhCCe-eEEecCCCCHHHHHHHHHHHHHHHH--HHHcCCCcceEEECHHHHHHHHH-hcChhcCChHHHHHHHHHHHHHH
Confidence 99999 6899999999999999988875322 22223 357899999999998 59999999999999999998775
Q ss_pred HHHHHhcccCCCCEEEEEEcCCCcEEEEeCCCCCCCCcCCCC
Q 005511 649 AEKMLAREIKEGDSVIVDVDSDGNVTVLNGSSGAPESLADPL 690 (693)
Q Consensus 649 ~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (693)
.+.+..+....+..+.+.++.+..-.++.-+....+.+.+..
T Consensus 556 ~~~~~~~~~~~~~~~~v~i~~~~~~~~lg~~~~~~~~~~~~~ 597 (775)
T TIGR00763 556 VKLVEQGEKKKSEAESVVITPDNLKKYLGKPVFTYERAYEVT 597 (775)
T ss_pred HHHHhccCcccCCcccccCCHHHHHHhcCccccccchhccCC
Confidence 444434555555555555555544444444444444443333
No 23
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.93 E-value=8.7e-24 Score=226.55 Aligned_cols=335 Identities=16% Similarity=0.224 Sum_probs=213.1
Q ss_pred CeEEEEeccchhhhCCCCCChHhHHHHHhhhh----cCCCcEEEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHH
Q 005511 135 EIILFIDEVHTLIGAGAAEGAIDAANILKPSL----ARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETI 210 (693)
Q Consensus 135 ~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l----~~~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~ 210 (693)
+.++++.|+|.++.. ..+...|+.+. ..+..+|+.+. .. .+++.|.+-+..+++|.|+.+|+.
T Consensus 82 ~~~~vl~d~h~~~~~------~~~~r~l~~l~~~~~~~~~~~i~~~~-~~------~~p~el~~~~~~~~~~lP~~~ei~ 148 (489)
T CHL00195 82 PALFLLKDFNRFLND------ISISRKLRNLSRILKTQPKTIIIIAS-EL------NIPKELKDLITVLEFPLPTESEIK 148 (489)
T ss_pred CcEEEEecchhhhcc------hHHHHHHHHHHHHHHhCCCEEEEEcC-CC------CCCHHHHhceeEEeecCcCHHHHH
Confidence 689999999999732 12333343332 23334444433 22 578888887789999999999999
Q ss_pred HHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhhhhHHHHHhhHHHHhhcCCc-HHHHHHHHHHHHHHHHH
Q 005511 211 QILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLP-EEARELEKELRQITKEK 289 (693)
Q Consensus 211 ~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 289 (693)
++++.+.. ..+..++++.++.+++.+.|... .++..++..+... ..... +.+..+
T Consensus 149 ~~l~~~~~----~~~~~~~~~~~~~l~~~~~gls~-----~~~~~~~~~~~~~----~~~~~~~~~~~i----------- 204 (489)
T CHL00195 149 KELTRLIK----SLNIKIDSELLENLTRACQGLSL-----ERIRRVLSKIIAT----YKTIDENSIPLI----------- 204 (489)
T ss_pred HHHHHHHH----hcCCCCCHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHH----cCCCChhhHHHH-----------
Confidence 99987765 34667889999999998877642 3344444332211 10000 000000
Q ss_pred HHHhcCcchHHHhhhHHHHHHHHHHHHHHHhhhhhhhHhhhhcCCCCCccCHhHHHHHHHHHh--CCCccCCCcchhHHH
Q 005511 290 NEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWT--GIPVEKVSTDESDRL 367 (693)
Q Consensus 290 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~--~~~~~~~~~~~~~~~ 367 (693)
.+.. .+.+.... .......+
T Consensus 205 -----------------------------~~~k----------------------~q~~~~~~~le~~~~~~~------- 226 (489)
T CHL00195 205 -----------------------------LEEK----------------------KQIISQTEILEFYSVNEK------- 226 (489)
T ss_pred -----------------------------HHHH----------------------HHHHhhhccccccCCCCC-------
Confidence 0000 00000000 00000111
Q ss_pred HHHHHHHhccccChHHHHHHHHHHHHH-----HhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeecc
Q 005511 368 LKMEETLHKRVIGQDEAVKAISRAIRR-----ARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDM 442 (693)
Q Consensus 368 ~~~~~~l~~~v~g~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~ 442 (693)
+++|.|.+.+++.+...... ...|...| . ++||+||||||||++|+++|+.+ +.+|+.+++
T Consensus 227 -------~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~p---k-GILL~GPpGTGKTllAkaiA~e~---~~~~~~l~~ 292 (489)
T CHL00195 227 -------ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTP---R-GLLLVGIQGTGKSLTAKAIANDW---QLPLLRLDV 292 (489)
T ss_pred -------HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCC---c-eEEEECCCCCcHHHHHHHHHHHh---CCCEEEEEh
Confidence 23455666555555443211 12333333 3 59999999999999999999998 889999999
Q ss_pred ccccchhhhhhhcCCCCCCcCcCcc--chhhHHHHcCCCEEEEEccCcccCH------------HHHHHHHHHhhcceee
Q 005511 443 SEFMERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKAHP------------DVFNMMLQILEDGRLT 508 (693)
Q Consensus 443 ~~~~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~l~~------------~~~~~Ll~~le~~~~~ 508 (693)
+.+.+. |+|+++. +.++..++...+|||||||+|++.. .+++.|+..|++.
T Consensus 293 ~~l~~~------------~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~--- 357 (489)
T CHL00195 293 GKLFGG------------IVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK--- 357 (489)
T ss_pred HHhccc------------ccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC---
Confidence 876532 8887765 5667777788899999999998732 2567778888652
Q ss_pred CCCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhh--ccCcEEEcCCCC
Q 005511 509 DSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLN--RLDEMIVFRQLT 586 (693)
Q Consensus 509 ~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~--R~~~~v~f~~l~ 586 (693)
...+++|+|||.... ++|++++ |||.++.++.|+
T Consensus 358 --------~~~V~vIaTTN~~~~------------------------------------Ld~allR~GRFD~~i~v~lP~ 393 (489)
T CHL00195 358 --------KSPVFVVATANNIDL------------------------------------LPLEILRKGRFDEIFFLDLPS 393 (489)
T ss_pred --------CCceEEEEecCChhh------------------------------------CCHHHhCCCcCCeEEEeCCcC
Confidence 246789999996654 8899985 999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHHHHHHH
Q 005511 587 KLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDS 647 (693)
Q Consensus 587 ~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~~~ 647 (693)
.++..+|++.++..... . ..++.-++.|++ ....|..++|++.+..+...+
T Consensus 394 ~~eR~~Il~~~l~~~~~-------~-~~~~~dl~~La~--~T~GfSGAdI~~lv~eA~~~A 444 (489)
T CHL00195 394 LEEREKIFKIHLQKFRP-------K-SWKKYDIKKLSK--LSNKFSGAEIEQSIIEAMYIA 444 (489)
T ss_pred HHHHHHHHHHHHhhcCC-------C-cccccCHHHHHh--hcCCCCHHHHHHHHHHHHHHH
Confidence 99999999988876321 0 112223556666 344566778888777665543
No 24
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.4e-25 Score=233.86 Aligned_cols=202 Identities=25% Similarity=0.377 Sum_probs=172.3
Q ss_pred hcCCCCCccCCHHHHHHHHHHH-------------hcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEE
Q 005511 37 EEGKLDPVVGRQPQIERVVQIL-------------GRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVIT 103 (693)
Q Consensus 37 ~~~~~~~iiG~~~~~~~l~~~l-------------~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 103 (693)
..-++++|-|++++++.|.+.+ ...++++||||||||||||++|+++|.+. +..++.
T Consensus 429 p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~----------~~nFls 498 (693)
T KOG0730|consen 429 PNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA----------GMNFLS 498 (693)
T ss_pred CCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh----------cCCeee
Confidence 3448999999999999988653 34778999999999999999999999998 788999
Q ss_pred EeccccccCCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCCh---HhHHHHHhhhhc----CCCcEEEEE
Q 005511 104 LDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGA---IDAANILKPSLA----RGELQCIGA 176 (693)
Q Consensus 104 ~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~---~~~~~~L~~~l~----~~~v~vI~~ 176 (693)
+.+..+. ++|.|+.|..++.+|+.+++..|||+|+||+|.+...++.+.. ..+++.|+..|+ ...+.||++
T Consensus 499 vkgpEL~--sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAA 576 (693)
T KOG0730|consen 499 VKGPELF--SKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAA 576 (693)
T ss_pred ccCHHHH--HHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEec
Confidence 9999988 7899999999999999999999999999999999987654433 345566666654 457999999
Q ss_pred echHHHHhhhhcCHHHhc--cCC-ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChH-HHHHHHHhhhhhhcccCCchh
Q 005511 177 TTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDE-ALVSAAQLSYQYISDRFLPDK 252 (693)
Q Consensus 177 t~~~~~~~~~~l~~~l~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~-~l~~l~~~~~~~~~~~~~~~~ 252 (693)
||+++ .+|++++| ||+ .|.+|.|+.+.|.+|++...+++ .++++ .++.+++.+.+|.+ ++
T Consensus 577 TNRpd-----~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkm------p~~~~vdl~~La~~T~g~SG-----Ae 640 (693)
T KOG0730|consen 577 TNRPD-----MIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKM------PFSEDVDLEELAQATEGYSG-----AE 640 (693)
T ss_pred cCChh-----hcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcC------CCCccccHHHHHHHhccCCh-----HH
Confidence 99998 69999999 998 89999999999999999888764 44444 68899999999976 88
Q ss_pred hhhHHHHHhhHHHH
Q 005511 253 AIDLIDEAGSRVRL 266 (693)
Q Consensus 253 ~~~ll~~a~~~~~~ 266 (693)
...+|++|+..+..
T Consensus 641 l~~lCq~A~~~a~~ 654 (693)
T KOG0730|consen 641 IVAVCQEAALLALR 654 (693)
T ss_pred HHHHHHHHHHHHHH
Confidence 89999999876643
No 25
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.8e-24 Score=215.37 Aligned_cols=271 Identities=24% Similarity=0.370 Sum_probs=201.4
Q ss_pred HHHHHHHHhccccChHHHHHHHHHHHHHHhhcCCC---------------------C-----------------------
Q 005511 367 LLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKN---------------------P----------------------- 402 (693)
Q Consensus 367 ~~~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~---------------------~----------------------- 402 (693)
..++.+.|.+.|+||+.+++.|.-++..++..+.+ |
T Consensus 136 PkeI~~~Ldk~VVGQe~AKKvLsVAVYnHYkRI~hn~~s~~~~~a~~s~~~~~~~~P~~~~~~~~~a~~~~~~r~~~~~l 215 (564)
T KOG0745|consen 136 PKEICEYLDKFVVGQEKAKKVLSVAVYNHYKRIYHNEPSRQKELAEASKSAKDRDNPIELEISESNAQWPNNQRQIAKAL 215 (564)
T ss_pred hHHHHHHhhhheechhhhhheeeehhhHHHHHHhcchHHHHHHHhhhhhcccCCCCcccccccccccccccccchhcccc
Confidence 45677888999999999998776655433221111 0
Q ss_pred -C------CCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCCcCcCccchhhHHHH
Q 005511 403 -N------RPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVR 475 (693)
Q Consensus 403 -~------~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~ 475 (693)
. -.+.++||.||+|+|||.+|+.||+.+ +.||...||..+.. +||+|++....+...+.
T Consensus 216 d~~~~dv~LeKSNvLllGPtGsGKTllaqTLAr~l---dVPfaIcDcTtLTQ-----------AGYVGeDVEsvi~KLl~ 281 (564)
T KOG0745|consen 216 DEDDEDVELEKSNVLLLGPTGSGKTLLAQTLARVL---DVPFAICDCTTLTQ-----------AGYVGEDVESVIQKLLQ 281 (564)
T ss_pred cccccceeeecccEEEECCCCCchhHHHHHHHHHh---CCCeEEecccchhh-----------cccccccHHHHHHHHHH
Confidence 0 112479999999999999999999999 99999999998864 67999987655544443
Q ss_pred -------cCCCEEEEEccCcccC--------------HHHHHHHHHHhhcceeeCCC-C---------CeeecCCeEEEE
Q 005511 476 -------RRPYTVVLFDEIEKAH--------------PDVFNMMLQILEDGRLTDSK-G---------RTVDFKNTLLIM 524 (693)
Q Consensus 476 -------~~~~~vl~iDEid~l~--------------~~~~~~Ll~~le~~~~~~~~-~---------~~~~~~~~~iI~ 524 (693)
++..||+||||+||+. ..||..||+++|+..+..+. | -.++..|++||+
T Consensus 282 ~A~~nVekAQqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFia 361 (564)
T KOG0745|consen 282 EAEYNVEKAQQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIA 361 (564)
T ss_pred HccCCHHHHhcCeEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEe
Confidence 4557999999999984 35999999999976655432 2 146777888888
Q ss_pred ecCCC--hhhhh--hcccccccccCcC----ccc----chHH-------HHHHHHHHHHhhc-CchhHhhccCcEEEcCC
Q 005511 525 TSNVG--SSVIE--KGGRRIGFDLDYD----EKD----SSYN-------RIKSLVTEELKQY-FRPEFLNRLDEMIVFRQ 584 (693)
Q Consensus 525 ~tn~~--~~~i~--~~~~~~~f~~~~~----~~~----~~~~-------~l~~~~~~~l~~~-~~~~l~~R~~~~v~f~~ 584 (693)
..-+. ..+|. ...+++||..... .+. .... .|+..-..+|..+ +-|+|++||..+|+|.+
T Consensus 362 sGAF~~Ldk~I~rR~~d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~ 441 (564)
T KOG0745|consen 362 SGAFVGLDKIISRRLDDKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHS 441 (564)
T ss_pred cccccchHHHHHHhhcchhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccc
Confidence 76542 23333 4567889976632 111 1111 1111112233332 46999999999999999
Q ss_pred CCHHHHHHHH----HHHHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHHHHHHHHHHH
Q 005511 585 LTKLEVKEIA----DIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEK 651 (693)
Q Consensus 585 l~~~~~~~i~----~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~~~l~~~ 651 (693)
|+++++.+|+ ...+.+++..|...++.|.|+++|++.+++.+...+.|+|.|+..+++++.+++++-
T Consensus 442 L~~~~Lv~VLtEPknaL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~Lleamfev 512 (564)
T KOG0745|consen 442 LDEDQLVRVLTEPKNALGKQYKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEAMFEV 512 (564)
T ss_pred cCHHHHHHHHhcchhhHHHHHHHHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhcccC
Confidence 9999999999 556778888888889999999999999999999999999999999999998877664
No 26
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.92 E-value=7.4e-25 Score=223.52 Aligned_cols=229 Identities=18% Similarity=0.258 Sum_probs=190.8
Q ss_pred ccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhc
Q 005511 376 KRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLI 455 (693)
Q Consensus 376 ~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 455 (693)
..+||++.++..+.+.+...... ..+||+.|++||||..+|++|++...+.+.||+.+||+.+.+.-..++||
T Consensus 223 ~~iIG~S~am~~ll~~i~~VA~S-------d~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELF 295 (550)
T COG3604 223 GGIIGRSPAMRQLLKEIEVVAKS-------DSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELF 295 (550)
T ss_pred ccceecCHHHHHHHHHHHHHhcC-------CCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHh
Confidence 57999999999999999877422 23699999999999999999999999999999999999999988999999
Q ss_pred CCCCC-CcCcCccchhhHHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhh
Q 005511 456 GSPPG-YVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIE 534 (693)
Q Consensus 456 g~~~~-~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~ 534 (693)
|+..| +.|... .=.+.++.+.+|.||+|||..+|..+|..||.+|++|++...+|.....-++++|++||..-.
T Consensus 296 GHeKGAFTGA~~--~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNRDL~--- 370 (550)
T COG3604 296 GHEKGAFTGAIN--TRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNRDLE--- 370 (550)
T ss_pred cccccccccchh--ccCcceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEEEEEEEeccchhHH---
Confidence 99766 444321 112445568899999999999999999999999999999988887777789999999994432
Q ss_pred hcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcE-EEcCCC--CHHHHHHHHHHHHHHHHHHHhcCCC-
Q 005511 535 KGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEM-IVFRQL--TKLEVKEIADIMLKEVFDRLKTKDI- 610 (693)
Q Consensus 535 ~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~-v~f~~l--~~~~~~~i~~~~l~~~~~~~~~~~~- 610 (693)
+......|+.+|++|++.+ +.+||| ..+|+.-++..++++++.++ |.
T Consensus 371 --------------------------~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~---gr~ 421 (550)
T COG3604 371 --------------------------EMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRL---GRA 421 (550)
T ss_pred --------------------------HHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhc---CCc
Confidence 2333345999999999665 666777 66899999999999888766 66
Q ss_pred eEEeCHHHHHHHHHhccCCCCCcchHHHHHHHHHHHH
Q 005511 611 ELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDS 647 (693)
Q Consensus 611 ~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~~~ 647 (693)
.+.+++++++.|.++.|++| +|+|+++|++.+..+
T Consensus 422 ~l~ls~~Al~~L~~y~wPGN--VRELen~veRavlla 456 (550)
T COG3604 422 ILSLSAEALELLSSYEWPGN--VRELENVVERAVLLA 456 (550)
T ss_pred ccccCHHHHHHHHcCCCCCc--HHHHHHHHHHHHHHh
Confidence 67899999999999666666 999999999988653
No 27
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.92 E-value=1.1e-24 Score=225.71 Aligned_cols=230 Identities=18% Similarity=0.286 Sum_probs=192.0
Q ss_pred HhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhh
Q 005511 374 LHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSK 453 (693)
Q Consensus 374 l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 453 (693)
-+..++|.+.++..+.+.+++.. +...++|+.|++||||..+|++|++...+.+.||+.+||+.+.+.--.+.
T Consensus 243 ~f~~Iig~S~~m~~~~~~akr~A-------~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESE 315 (560)
T COG3829 243 TFDDIIGESPAMLRVLELAKRIA-------KTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESE 315 (560)
T ss_pred chhhhccCCHHHHHHHHHHHhhc-------CCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHH
Confidence 46789999999988888887764 22236999999999999999999999999999999999999998888899
Q ss_pred hcCCCCC-CcCcCccchhhHHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhh
Q 005511 454 LIGSPPG-YVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSV 532 (693)
Q Consensus 454 l~g~~~~-~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~ 532 (693)
|||...| ++|...++. .+.++.+.+|.||+|||..+|...|..||++|+++++...+|......|+++|+|||.....
T Consensus 316 LFGye~GAFTGA~~~GK-~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL~~ 394 (560)
T COG3829 316 LFGYEKGAFTGASKGGK-PGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRNLEK 394 (560)
T ss_pred HhCcCCccccccccCCC-CcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCcCHHH
Confidence 9998876 677665322 24556688999999999999999999999999999999888888888899999999965543
Q ss_pred hhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcE-EEcCCC--CHHHHHHHHHHHHHHHHHHHhcCC
Q 005511 533 IEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEM-IVFRQL--TKLEVKEIADIMLKEVFDRLKTKD 609 (693)
Q Consensus 533 i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~-v~f~~l--~~~~~~~i~~~~l~~~~~~~~~~~ 609 (693)
... .+.|+.+|++|++.+ |..||| .++|+..+++.+|+++..++ +
T Consensus 395 ~i~-----------------------------~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~---~ 442 (560)
T COG3829 395 MIA-----------------------------EGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRY---G 442 (560)
T ss_pred HHh-----------------------------cCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHc---C
Confidence 222 233999999999665 777787 77999999999999988877 4
Q ss_pred CeEE-eCHHHHHHHHHhccCCCCCcchHHHHHHHHHH
Q 005511 610 IELQ-VTERFRERVVEEGYNPSYGARPLRRAIMRLLE 645 (693)
Q Consensus 610 ~~l~-~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~ 645 (693)
..+. +++++...|.++.|++| +|+|++.|++.+.
T Consensus 443 ~~v~~ls~~a~~~L~~y~WPGN--VRELeNviER~v~ 477 (560)
T COG3829 443 RNVKGLSPDALALLLRYDWPGN--VRELENVIERAVN 477 (560)
T ss_pred CCcccCCHHHHHHHHhCCCCch--HHHHHHHHHHHHh
Confidence 4444 99999999999666666 9999999998774
No 28
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.92 E-value=3.9e-24 Score=218.84 Aligned_cols=260 Identities=27% Similarity=0.402 Sum_probs=189.5
Q ss_pred HHHHHHHhccccChHHHHHHHHHHHHHH--hhcCCCCC---CCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeecc
Q 005511 368 LKMEETLHKRVIGQDEAVKAISRAIRRA--RVGLKNPN---RPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDM 442 (693)
Q Consensus 368 ~~~~~~l~~~v~g~~~~~~~l~~~~~~~--~~~~~~~~---~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~ 442 (693)
.++...|.+.|+||+.+++.+..++... +.+...+. .+..++||+||||||||++|++||+.+ +.+|+.+|+
T Consensus 7 ~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l---~~~fi~vD~ 83 (443)
T PRK05201 7 REIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEA 83 (443)
T ss_pred HHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh---CChheeecc
Confidence 4566788899999999999999988653 22222111 123579999999999999999999998 889999999
Q ss_pred ccccchhhh----------------------------------------hhhcCCC------------------------
Q 005511 443 SEFMERHTV----------------------------------------SKLIGSP------------------------ 458 (693)
Q Consensus 443 ~~~~~~~~~----------------------------------------~~l~g~~------------------------ 458 (693)
+++.+.... ..+.+..
T Consensus 84 t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l 163 (443)
T PRK05201 84 TKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKL 163 (443)
T ss_pred hhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHH
Confidence 877642100 0011100
Q ss_pred ---------------C-CC-c---C---cCcc----ch--------------------------------------hhHH
Q 005511 459 ---------------P-GY-V---G---YTEG----GQ--------------------------------------LTEA 473 (693)
Q Consensus 459 ---------------~-~~-~---g---~~~~----~~--------------------------------------l~~~ 473 (693)
. .. . + ..+. +. ...+
T Consensus 164 ~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~a 243 (443)
T PRK05201 164 REGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEA 243 (443)
T ss_pred HcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHH
Confidence 0 00 0 0 0000 00 0112
Q ss_pred HHc-CCCEEEEEccCcccC------------HHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhccccc
Q 005511 474 VRR-RPYTVVLFDEIEKAH------------PDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRI 540 (693)
Q Consensus 474 ~~~-~~~~vl~iDEid~l~------------~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~ 540 (693)
+.. ...||||||||||+. ..||+.||++||+..+.... ..++..|++||++.-+...
T Consensus 244 i~~ae~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~-~~i~T~~ILFI~~GAF~~~--------- 313 (443)
T PRK05201 244 IERVEQNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKY-GMVKTDHILFIASGAFHVS--------- 313 (443)
T ss_pred HHHHHcCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecc-eeEECCceeEEecCCcCCC---------
Confidence 333 367999999999983 24999999999987665433 4788899999999754321
Q ss_pred ccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHH----HHHHHHHHHHHhcCCCeEEeCH
Q 005511 541 GFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIA----DIMLKEVFDRLKTKDIELQVTE 616 (693)
Q Consensus 541 ~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~----~~~l~~~~~~~~~~~~~l~~~~ 616 (693)
. . .+ +-|+|.+||..++.+.+|+.+++..|+ ...++++...+...|+.+.|++
T Consensus 314 -----k-----p---------~D----lIPEl~GR~Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd 370 (443)
T PRK05201 314 -----K-----P---------SD----LIPELQGRFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTD 370 (443)
T ss_pred -----C-----h---------hh----ccHHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcH
Confidence 0 0 01 569999999999999999999999999 6689999999999999999999
Q ss_pred HHHHHHHHhccC-----CCCCcchHHHHHHHHHHHHHHHHHHhcccCCCCEEEEEE
Q 005511 617 RFRERVVEEGYN-----PSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDV 667 (693)
Q Consensus 617 ~~~~~l~~~~~~-----~~~g~r~l~~~i~~~i~~~l~~~~l~~~~~~~~~~~v~~ 667 (693)
++++.+++.++. .+.|||.|+..+++++.+.+++..- ..+..++|+-
T Consensus 371 ~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d~~Fe~p~----~~~~~v~I~~ 422 (443)
T PRK05201 371 DAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLEDISFEAPD----MSGETVTIDA 422 (443)
T ss_pred HHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhccCCC----CCCCEEEECH
Confidence 999999998876 6899999999999999987777532 2355666553
No 29
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.92 E-value=8.7e-23 Score=231.59 Aligned_cols=265 Identities=22% Similarity=0.310 Sum_probs=210.1
Q ss_pred hHHHHHHHHHhCCCccCCCcchhHHHHHHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHH
Q 005511 342 VDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSE 421 (693)
Q Consensus 342 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~ 421 (693)
.-+...+...+.+|+...+.+. .++.+.++.|.+..+|++.+++.+.+.+........ .....++|+||||||||+
T Consensus 289 ~~~~~yl~~~~~~pw~~~~~~~-~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~~---~~g~~i~l~GppG~GKTt 364 (784)
T PRK10787 289 TVVRGYIDWMVQVPWNARSKVK-KDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNK---IKGPILCLVGPPGVGKTS 364 (784)
T ss_pred HHHHHHHHHHHhCCCCCCCccc-ccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhccc---CCCceEEEECCCCCCHHH
Confidence 3456778888999999877654 568899999999999999999999987764432111 111259999999999999
Q ss_pred HHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCCcCcCccchhhHHHHcC--CCEEEEEccCcccCHHH----H
Q 005511 422 LAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRR--PYTVVLFDEIEKAHPDV----F 495 (693)
Q Consensus 422 lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~--~~~vl~iDEid~l~~~~----~ 495 (693)
+++.+|+.+ +.++++++++... +...+.|+...|.|...++ +...+..+ .+.|++|||+|++++.. +
T Consensus 365 l~~~ia~~l---~~~~~~i~~~~~~---d~~~i~g~~~~~~g~~~G~-~~~~l~~~~~~~~villDEidk~~~~~~g~~~ 437 (784)
T PRK10787 365 LGQSIAKAT---GRKYVRMALGGVR---DEAEIRGHRRTYIGSMPGK-LIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPA 437 (784)
T ss_pred HHHHHHHHh---CCCEEEEEcCCCC---CHHHhccchhccCCCCCcH-HHHHHHhcCCCCCEEEEEChhhcccccCCCHH
Confidence 999999998 6789888877654 3456777777788877654 34444432 35699999999998875 6
Q ss_pred HHHHHHhhcc---eeeCCC-CCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchh
Q 005511 496 NMMLQILEDG---RLTDSK-GRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPE 571 (693)
Q Consensus 496 ~~Ll~~le~~---~~~~~~-~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 571 (693)
+.|+.+|+.+ .+.+.. .-.++.++++||+|+|.-. ++|+
T Consensus 438 ~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~-------------------------------------i~~a 480 (784)
T PRK10787 438 SALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMN-------------------------------------IPAP 480 (784)
T ss_pred HHHHHHhccccEEEEecccccccccCCceEEEEcCCCCC-------------------------------------CCHH
Confidence 9999999864 455544 4467889999999998432 7899
Q ss_pred HhhccCcEEEcCCCCHHHHHHHHHHHHH-HHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHHHHHHHHHH
Q 005511 572 FLNRLDEMIVFRQLTKLEVKEIADIMLK-EVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAE 650 (693)
Q Consensus 572 l~~R~~~~v~f~~l~~~~~~~i~~~~l~-~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~~~l~~ 650 (693)
|++|| .++.|.+|+.+++.+|++++|. +..++....+..+.+++++++++++ +|.+.+|+|+|++.|++.+...+++
T Consensus 481 Ll~R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~-~yt~e~GaR~LeR~I~~i~r~~l~~ 558 (784)
T PRK10787 481 LLDRM-EVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIR-YYTREAGVRSLEREISKLCRKAVKQ 558 (784)
T ss_pred Hhcce-eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHH-hCCcccCCcHHHHHHHHHHHHHHHH
Confidence 99999 7999999999999999999985 3334443445679999999999997 7999999999999999999999988
Q ss_pred HHHhcc
Q 005511 651 KMLARE 656 (693)
Q Consensus 651 ~~l~~~ 656 (693)
.++.+.
T Consensus 559 ~~~~~~ 564 (784)
T PRK10787 559 LLLDKS 564 (784)
T ss_pred HHhcCC
Confidence 877643
No 30
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=5.1e-24 Score=209.66 Aligned_cols=232 Identities=25% Similarity=0.380 Sum_probs=176.5
Q ss_pred CCCCccCCHHHHHHHHHHHh------------cCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEecc
Q 005511 40 KLDPVVGRQPQIERVVQILG------------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMG 107 (693)
Q Consensus 40 ~~~~iiG~~~~~~~l~~~l~------------~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 107 (693)
.+++|.|..+.++-|.+++- ..+..++|++||||||||+||+++|.++ +..++-++.+
T Consensus 210 kW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc----------~tTFFNVSss 279 (491)
T KOG0738|consen 210 KWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC----------GTTFFNVSSS 279 (491)
T ss_pred ChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh----------cCeEEEechh
Confidence 78899999999998887542 2566899999999999999999999999 7888888888
Q ss_pred ccccCCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhh----hhc-------CCC-cEEEE
Q 005511 108 LLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKP----SLA-------RGE-LQCIG 175 (693)
Q Consensus 108 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~----~l~-------~~~-v~vI~ 175 (693)
.+. ++|+|+.+..++-+|..++...|.++||||||.|+..++..+..+....++. .++ ... |.|++
T Consensus 280 tlt--SKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLA 357 (491)
T KOG0738|consen 280 TLT--SKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLA 357 (491)
T ss_pred hhh--hhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEe
Confidence 887 8899999999999999999999999999999999987776665554444332 222 222 56666
Q ss_pred EechHHHHhhhhcCHHHhccCC-ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhhh
Q 005511 176 ATTLDEYRKHIEKDPALERRFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAI 254 (693)
Q Consensus 176 ~t~~~~~~~~~~l~~~l~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 254 (693)
+||.| | ++|.+|+|||. .|.+|.|+.+.|..+++..+...... ++-.++.+++.+.||.+ .+..
T Consensus 358 ATN~P-W----diDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~-----~~~~~~~lae~~eGySG-----aDI~ 422 (491)
T KOG0738|consen 358 ATNFP-W----DIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELD-----DPVNLEDLAERSEGYSG-----ADIT 422 (491)
T ss_pred ccCCC-c----chHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCC-----CCccHHHHHHHhcCCCh-----HHHH
Confidence 67765 3 89999999998 99999999999999999887643222 33357788999999976 7888
Q ss_pred hHHHHHhhHHHHhhcCCcHHHHHHHHHHHHHHHHH-HHHhcCcchHHHhh
Q 005511 255 DLIDEAGSRVRLRHAQLPEEARELEKELRQITKEK-NEAVRGQDFEKAGE 303 (693)
Q Consensus 255 ~ll~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~ 303 (693)
.+|++|.....-|...... ...++.+..+. ...+..+||+.|..
T Consensus 423 nvCreAsm~~mRR~i~g~~-----~~ei~~lakE~~~~pv~~~Dfe~Al~ 467 (491)
T KOG0738|consen 423 NVCREASMMAMRRKIAGLT-----PREIRQLAKEEPKMPVTNEDFEEALR 467 (491)
T ss_pred HHHHHHHHHHHHHHHhcCC-----cHHhhhhhhhccccccchhhHHHHHH
Confidence 8998887765544322111 12233333222 24567788887755
No 31
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2e-22 Score=214.06 Aligned_cols=263 Identities=23% Similarity=0.329 Sum_probs=209.4
Q ss_pred HHHHHHHHHhCCCccCCCcchhHHHHHHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHH
Q 005511 343 DIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSEL 422 (693)
Q Consensus 343 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~l 422 (693)
-+...+.+.+.+||...+.+. .++...++.|.++-.|.+.++++|.+++.-...... ...+.++|+||||+|||++
T Consensus 291 ViRnYlDwll~lPW~~~sk~~-~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~---~kGpILcLVGPPGVGKTSL 366 (782)
T COG0466 291 VIRNYLDWLLDLPWGKRSKDK-LDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTKK---LKGPILCLVGPPGVGKTSL 366 (782)
T ss_pred HHHHHHHHHHhCCCccccchh-hhHHHHHHHhcccccCchhHHHHHHHHHHHHHHhcc---CCCcEEEEECCCCCCchhH
Confidence 457778889999998876644 458889999999999999999999998865543211 1112588999999999999
Q ss_pred HHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCCcCcCccchhhHHHHc-CCCEEEEEccCcccCHH----HHHH
Q 005511 423 AKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRR-RPYTVVLFDEIEKAHPD----VFNM 497 (693)
Q Consensus 423 A~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~-~~~~vl~iDEid~l~~~----~~~~ 497 (693)
++.||+.+ +..|+++.++.+. +.+++-||...|+|...++.+....+. ..+.|++||||||+..+ -..+
T Consensus 367 gkSIA~al---~RkfvR~sLGGvr---DEAEIRGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSA 440 (782)
T COG0466 367 GKSIAKAL---GRKFVRISLGGVR---DEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASA 440 (782)
T ss_pred HHHHHHHh---CCCEEEEecCccc---cHHHhccccccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHH
Confidence 99999999 8899999998775 567788999999999986555444332 22569999999999654 4688
Q ss_pred HHHHhh---cceeeCCC-CCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHh
Q 005511 498 MLQILE---DGRLTDSK-GRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFL 573 (693)
Q Consensus 498 Ll~~le---~~~~~~~~-~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~ 573 (693)
||.+|+ |..|.+.. .-.++.++++||+|+|.-.. ++.+|+
T Consensus 441 LLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~t------------------------------------IP~PLl 484 (782)
T COG0466 441 LLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDT------------------------------------IPAPLL 484 (782)
T ss_pred HHhhcCHhhcCchhhccccCccchhheEEEeecCcccc------------------------------------CChHHh
Confidence 999996 35566655 56788999999999996544 889999
Q ss_pred hccCcEEEcCCCCHHHHHHHHHHHHHHH-HHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHHHHHHHHHHHH
Q 005511 574 NRLDEMIVFRQLTKLEVKEIADIMLKEV-FDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKM 652 (693)
Q Consensus 574 ~R~~~~v~f~~l~~~~~~~i~~~~l~~~-~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~~~l~~~~ 652 (693)
+|+ .+|.+..|+.++..+|++++|=.. .+......-.+.|+++++..+.++ |....|+|.|++.|...++....+.+
T Consensus 485 DRM-EiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~-YTREAGVR~LeR~i~ki~RK~~~~i~ 562 (782)
T COG0466 485 DRM-EVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRY-YTREAGVRNLEREIAKICRKAAKKIL 562 (782)
T ss_pred cce-eeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHH-HhHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 999 999999999999999998886432 222222234588999999999986 99999999999999987776655555
Q ss_pred H
Q 005511 653 L 653 (693)
Q Consensus 653 l 653 (693)
.
T Consensus 563 ~ 563 (782)
T COG0466 563 L 563 (782)
T ss_pred h
Confidence 4
No 32
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.91 E-value=2.2e-23 Score=213.25 Aligned_cols=259 Identities=26% Similarity=0.406 Sum_probs=188.3
Q ss_pred HHHHHHHhccccChHHHHHHHHHHHHHHhhcCC------CCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeec
Q 005511 368 LKMEETLHKRVIGQDEAVKAISRAIRRARVGLK------NPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLD 441 (693)
Q Consensus 368 ~~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~------~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~ 441 (693)
.++...|.+.++||+++++.+..++........ .+..| .++||+||||||||++|++||+.+ +.+|+.+|
T Consensus 4 ~~I~~~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p-~~ILLiGppG~GKT~lAraLA~~l---~~~fi~vd 79 (441)
T TIGR00390 4 REIVAELDKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTP-KNILMIGPTGVGKTEIARRLAKLA---NAPFIKVE 79 (441)
T ss_pred HHHHHHHhhhccCHHHHHHHHHHHHHhhhhhhccccccccccCC-ceEEEECCCCCCHHHHHHHHHHHh---CCeEEEee
Confidence 356678889999999999999998876422111 11223 579999999999999999999998 88999999
Q ss_pred cccccch-----hh---hhh--------------------------------hcCCCCCCcCc-----------------
Q 005511 442 MSEFMER-----HT---VSK--------------------------------LIGSPPGYVGY----------------- 464 (693)
Q Consensus 442 ~~~~~~~-----~~---~~~--------------------------------l~g~~~~~~g~----------------- 464 (693)
++.+... .. ... |+.......|.
T Consensus 80 at~~~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~ 159 (441)
T TIGR00390 80 ATKFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKK 159 (441)
T ss_pred cceeecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHH
Confidence 8766431 00 001 11000000000
Q ss_pred -------------------------------Ccc----chh--------------------------------------h
Q 005511 465 -------------------------------TEG----GQL--------------------------------------T 471 (693)
Q Consensus 465 -------------------------------~~~----~~l--------------------------------------~ 471 (693)
... ..+ .
T Consensus 160 l~~g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~ 239 (441)
T TIGR00390 160 LREGELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQ 239 (441)
T ss_pred HhcCCccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHH
Confidence 000 000 0
Q ss_pred HHHHc-CCCEEEEEccCcccCH------------HHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhccc
Q 005511 472 EAVRR-RPYTVVLFDEIEKAHP------------DVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGR 538 (693)
Q Consensus 472 ~~~~~-~~~~vl~iDEid~l~~------------~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~ 538 (693)
++++. ...||||||||||+.. .||+.||++||+..+.... ..++..|++||++.-+...
T Consensus 240 ~a~~~~e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~-~~v~T~~ILFI~~GAF~~~------- 311 (441)
T TIGR00390 240 EAIDAVEQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKY-GMVKTDHILFIAAGAFQLA------- 311 (441)
T ss_pred HHHHHHHcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecc-eeEECCceeEEecCCcCCC-------
Confidence 11122 4679999999999842 3999999999987666433 4788999999999764321
Q ss_pred ccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHH----HHHHHHHHHHHhcCCCeEEe
Q 005511 539 RIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIA----DIMLKEVFDRLKTKDIELQV 614 (693)
Q Consensus 539 ~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~----~~~l~~~~~~~~~~~~~l~~ 614 (693)
. . .+ +-|+|.+||..++.+.+|+.+++..|+ +..++++...+...|+.+.|
T Consensus 312 -------k-----p---------~D----lIPEl~GR~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~F 366 (441)
T TIGR00390 312 -------K-----P---------SD----LIPELQGRFPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEF 366 (441)
T ss_pred -------C-----h---------hh----ccHHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEE
Confidence 0 0 01 569999999999999999999999999 67889999999999999999
Q ss_pred CHHHHHHHHHhccC-----CCCCcchHHHHHHHHHHHHHHHHHHhcccCCCCEEEEEE
Q 005511 615 TERFRERVVEEGYN-----PSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDV 667 (693)
Q Consensus 615 ~~~~~~~l~~~~~~-----~~~g~r~l~~~i~~~i~~~l~~~~l~~~~~~~~~~~v~~ 667 (693)
++++++++++.++. .+.|||.|+..+++++.+.+++..- ..+..++|+.
T Consensus 367 td~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~~fe~p~----~~~~~v~I~~ 420 (441)
T TIGR00390 367 SDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLEDISFEAPD----LSGQNITIDA 420 (441)
T ss_pred eHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhcCCC----CCCCEEEECH
Confidence 99999999998776 6899999999999999988777532 2356666653
No 33
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=7.2e-24 Score=219.33 Aligned_cols=198 Identities=26% Similarity=0.371 Sum_probs=162.7
Q ss_pred CCCCccCCHHHHHHHHHH-------------HhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEec
Q 005511 40 KLDPVVGRQPQIERVVQI-------------LGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM 106 (693)
Q Consensus 40 ~~~~iiG~~~~~~~l~~~-------------l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 106 (693)
+++++-|++++..+|... ++...|.+||||||||||||.||+++|.+. +..++.+..
T Consensus 509 tW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEa----------g~NFisVKG 578 (802)
T KOG0733|consen 509 TWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEA----------GANFISVKG 578 (802)
T ss_pred ChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhc----------cCceEeecC
Confidence 788899998888876553 445668899999999999999999999997 788999999
Q ss_pred cccccCCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCCh---HhHHHHHhhhhc----CCCcEEEEEech
Q 005511 107 GLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGA---IDAANILKPSLA----RGELQCIGATTL 179 (693)
Q Consensus 107 ~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~---~~~~~~L~~~l~----~~~v~vI~~t~~ 179 (693)
..+. .+|+|+.+..++.+|..++.+.|||+|+||+|.|++.++..+. ..+.|.|+..|+ +.+|.||++||+
T Consensus 579 PELl--NkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNR 656 (802)
T KOG0733|consen 579 PELL--NKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNR 656 (802)
T ss_pred HHHH--HHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCC
Confidence 8888 7899999999999999999999999999999999998766553 345666665554 567999999999
Q ss_pred HHHHhhhhcCHHHhc--cCC-ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChH-HHHHHHHhhh--hhhcccCCchhh
Q 005511 180 DEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDE-ALVSAAQLSY--QYISDRFLPDKA 253 (693)
Q Consensus 180 ~~~~~~~~l~~~l~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~-~l~~l~~~~~--~~~~~~~~~~~~ 253 (693)
|+ -+||+++| ||+ .+.++.|+.++|..||+...+. +...++++ .++.+++... +|.+ .+.
T Consensus 657 PD-----iIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn----~k~pl~~dVdl~eia~~~~c~gftG-----ADL 722 (802)
T KOG0733|consen 657 PD-----IIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKN----TKPPLSSDVDLDEIARNTKCEGFTG-----ADL 722 (802)
T ss_pred Cc-----ccchhhcCCCccCceeeecCCCHHHHHHHHHHHhcc----CCCCCCcccCHHHHhhcccccCCch-----hhH
Confidence 98 58999999 998 7899999999999999988873 33344433 4777877765 7765 666
Q ss_pred hhHHHHHhhH
Q 005511 254 IDLIDEAGSR 263 (693)
Q Consensus 254 ~~ll~~a~~~ 263 (693)
-.++++|...
T Consensus 723 aaLvreAsi~ 732 (802)
T KOG0733|consen 723 AALVREASIL 732 (802)
T ss_pred HHHHHHHHHH
Confidence 6777776543
No 34
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.91 E-value=8.8e-24 Score=197.84 Aligned_cols=193 Identities=24% Similarity=0.328 Sum_probs=134.5
Q ss_pred HHHhhhhhhhhcCCCCCccCCHHHHHHHHHHHhc-----CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceE
Q 005511 27 EYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGR-----RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKV 101 (693)
Q Consensus 27 ~~~~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~-----~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~ 101 (693)
.-..++.+.+||.+|++++||++.++.+.-++.. ....|+|||||||+||||||+.+|+++ +.++
T Consensus 9 ~~~~~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~----------~~~~ 78 (233)
T PF05496_consen 9 EEEAPLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL----------GVNF 78 (233)
T ss_dssp ---S-HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC----------T--E
T ss_pred CcchhhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc----------CCCe
Confidence 3456889999999999999999999986655432 345799999999999999999999999 6677
Q ss_pred EEEeccccccCCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCC-----------
Q 005511 102 ITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGE----------- 170 (693)
Q Consensus 102 ~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~----------- 170 (693)
..++...+.. .+ .+..++..+.. +.||||||+|++.+ ..++.|.+.+|.+.
T Consensus 79 ~~~sg~~i~k----~~----dl~~il~~l~~--~~ILFIDEIHRlnk--------~~qe~LlpamEd~~idiiiG~g~~a 140 (233)
T PF05496_consen 79 KITSGPAIEK----AG----DLAAILTNLKE--GDILFIDEIHRLNK--------AQQEILLPAMEDGKIDIIIGKGPNA 140 (233)
T ss_dssp EEEECCC--S----CH----HHHHHHHT--T--T-EEEECTCCC--H--------HHHHHHHHHHHCSEEEEEBSSSSS-
T ss_pred Eeccchhhhh----HH----HHHHHHHhcCC--CcEEEEechhhccH--------HHHHHHHHHhccCeEEEEecccccc
Confidence 7766543321 11 13344444443 44999999999954 47899999998543
Q ss_pred ---------cEEEEEechHHHHhhhhcCHHHhccCC-ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhh
Q 005511 171 ---------LQCIGATTLDEYRKHIEKDPALERRFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLS 240 (693)
Q Consensus 171 ---------v~vI~~t~~~~~~~~~~l~~~l~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~ 240 (693)
+.+|+||+... .++++|++||. ...+..++.+++.+|++.-.. ..++.++++....+|..+
T Consensus 141 r~~~~~l~~FTligATTr~g-----~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~----~l~i~i~~~~~~~Ia~rs 211 (233)
T PF05496_consen 141 RSIRINLPPFTLIGATTRAG-----LLSSPLRDRFGIVLRLEFYSEEELAKIVKRSAR----ILNIEIDEDAAEEIARRS 211 (233)
T ss_dssp BEEEEE----EEEEEESSGC-----CTSHCCCTTSSEEEE----THHHHHHHHHHCCH----CTT-EE-HHHHHHHHHCT
T ss_pred ceeeccCCCceEeeeecccc-----ccchhHHhhcceecchhcCCHHHHHHHHHHHHH----HhCCCcCHHHHHHHHHhc
Confidence 67899999886 58999999999 568999999999999986554 467889999999999988
Q ss_pred hhhhcccCCchhhhhHHHHHhh
Q 005511 241 YQYISDRFLPDKAIDLIDEAGS 262 (693)
Q Consensus 241 ~~~~~~~~~~~~~~~ll~~a~~ 262 (693)
.|. |+-|.++|+.+..
T Consensus 212 rGt------PRiAnrll~rvrD 227 (233)
T PF05496_consen 212 RGT------PRIANRLLRRVRD 227 (233)
T ss_dssp TTS------HHHHHHHHHHHCC
T ss_pred CCC------hHHHHHHHHHHHH
Confidence 775 7889999887653
No 35
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.90 E-value=1.8e-23 Score=208.28 Aligned_cols=199 Identities=26% Similarity=0.343 Sum_probs=162.9
Q ss_pred hhhhhhhhcCCCCCccCCHHHHHH---HHHHHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEec
Q 005511 30 TNLTKLAEEGKLDPVVGRQPQIER---VVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM 106 (693)
Q Consensus 30 ~~l~~~~~~~~~~~iiG~~~~~~~---l~~~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 106 (693)
.||.+++||.++++++||+..+.. |..++......+++|||||||||||+|+.+|+.. +..+..++.
T Consensus 12 ~PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~----------~~~f~~~sA 81 (436)
T COG2256 12 MPLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT----------NAAFEALSA 81 (436)
T ss_pred cChHHHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh----------CCceEEecc
Confidence 499999999999999999998854 8889999999999999999999999999999987 667777764
Q ss_pred cccccCCcccchHHHHHHHHHHHHHh----CCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCCcEEEEEechHHH
Q 005511 107 GLLVAGTKYRGEFEERLKKLMEEIKQ----SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEY 182 (693)
Q Consensus 107 ~~l~~~~~~~g~~~~~l~~~~~~~~~----~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~t~~~~~ 182 (693)
. .++ ...++.+++.+++ +...||||||||++... .+++|++.+|++.+++|++|+..++
T Consensus 82 v--~~g-------vkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~--------QQD~lLp~vE~G~iilIGATTENPs 144 (436)
T COG2256 82 V--TSG-------VKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA--------QQDALLPHVENGTIILIGATTENPS 144 (436)
T ss_pred c--ccc-------HHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh--------hhhhhhhhhcCCeEEEEeccCCCCC
Confidence 2 221 2346777777743 34689999999999644 6899999999999999999998763
Q ss_pred HhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHh---hhcCcccChHHHHHHHHhhhhhhcccCCchhhhhHHHH
Q 005511 183 RKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYE---IHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDE 259 (693)
Q Consensus 183 ~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~---~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~ 259 (693)
+.++++++||+.+++|.+++.++..++++..+.... ....+.+++++++.++..++|.. +.+.++++.
T Consensus 145 ---F~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~------R~aLN~LE~ 215 (436)
T COG2256 145 ---FELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDA------RRALNLLEL 215 (436)
T ss_pred ---eeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchH------HHHHHHHHH
Confidence 589999999999999999999999999998443221 11234488999999999998874 777888877
Q ss_pred HhhHH
Q 005511 260 AGSRV 264 (693)
Q Consensus 260 a~~~~ 264 (693)
+...+
T Consensus 216 ~~~~~ 220 (436)
T COG2256 216 AALSA 220 (436)
T ss_pred HHHhc
Confidence 66544
No 36
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.7e-23 Score=213.15 Aligned_cols=206 Identities=24% Similarity=0.320 Sum_probs=163.4
Q ss_pred hhcCCCCCccCCHHHHHHHHHH---Hh---------cCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEE
Q 005511 36 AEEGKLDPVVGRQPQIERVVQI---LG---------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVIT 103 (693)
Q Consensus 36 ~~~~~~~~iiG~~~~~~~l~~~---l~---------~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 103 (693)
.-.-+|+++-|.++.+..|.++ |+ .+-|.+|||+||||||||.||+++|.+. +.++++
T Consensus 298 ~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA----------~VPFF~ 367 (752)
T KOG0734|consen 298 MKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA----------GVPFFY 367 (752)
T ss_pred hcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc----------CCCeEe
Confidence 3345799999999887776554 33 3557899999999999999999999887 889999
Q ss_pred EeccccccCCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhh---c----CCCcEEEEE
Q 005511 104 LDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSL---A----RGELQCIGA 176 (693)
Q Consensus 104 ~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l---~----~~~v~vI~~ 176 (693)
...+.+. ..++|.-..+++.+|..++.+.|||+||||+|.+...+.......+...|+++| + +..++||++
T Consensus 368 ~sGSEFd--Em~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigA 445 (752)
T KOG0734|consen 368 ASGSEFD--EMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGA 445 (752)
T ss_pred ccccchh--hhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEec
Confidence 9888876 556788889999999999999999999999999977665554433334444444 3 457999999
Q ss_pred echHHHHhhhhcCHHHhc--cCC-ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhh
Q 005511 177 TTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKA 253 (693)
Q Consensus 177 t~~~~~~~~~~l~~~l~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 253 (693)
||.++ .+|++|.| ||+ +|.+|.|+..-|.+||+.++.+.....+ + ....+|+-+.||.+ .+.
T Consensus 446 TNfpe-----~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~--V---D~~iiARGT~GFsG-----AdL 510 (752)
T KOG0734|consen 446 TNFPE-----ALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDED--V---DPKIIARGTPGFSG-----ADL 510 (752)
T ss_pred cCChh-----hhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccC--C---CHhHhccCCCCCch-----HHH
Confidence 99999 79999999 998 9999999999999999999876532222 2 24556777777654 788
Q ss_pred hhHHHHHhhHHHHhh
Q 005511 254 IDLIDEAGSRVRLRH 268 (693)
Q Consensus 254 ~~ll~~a~~~~~~~~ 268 (693)
.+++..|+-.+....
T Consensus 511 aNlVNqAAlkAa~dg 525 (752)
T KOG0734|consen 511 ANLVNQAALKAAVDG 525 (752)
T ss_pred HHHHHHHHHHHHhcC
Confidence 888888877665544
No 37
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.90 E-value=6.5e-24 Score=197.24 Aligned_cols=155 Identities=54% Similarity=0.837 Sum_probs=125.5
Q ss_pred CCceEEEEeccCCCcHHHHHHHHHHHhc-CCCcceeeeccccccc----hhhhhhhcCCCCCCcCcCccchhhHHHHcCC
Q 005511 404 RPIASFIFSGPTGVGKSELAKALAAYYF-GSEEAMIRLDMSEFME----RHTVSKLIGSPPGYVGYTEGGQLTEAVRRRP 478 (693)
Q Consensus 404 ~~~~~iLl~Gp~GtGKt~lA~~la~~l~-~~~~~~~~~~~~~~~~----~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~ 478 (693)
+|..++||+||+|||||.+|+++|+.++ +...+++.+||+++.. .+.+..++|.+.+|++..+
T Consensus 1 ~p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~------------ 68 (171)
T PF07724_consen 1 RPKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEE------------ 68 (171)
T ss_dssp S-SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHH------------
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccc------------
Confidence 4678999999999999999999999998 7889999999999998 6777778887777766433
Q ss_pred CEEEEEccCcccCH-----------HHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhcccccccccCcC
Q 005511 479 YTVVLFDEIEKAHP-----------DVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYD 547 (693)
Q Consensus 479 ~~vl~iDEid~l~~-----------~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~ 547 (693)
++|||||||||+++ .+|+.||++||+|.+++..|+.+++.|++||+|+|.+...+.......
T Consensus 69 ~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~~~~~~~~~~------- 141 (171)
T PF07724_consen 69 GGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAEEIIDASRSG------- 141 (171)
T ss_dssp HTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTHHHHHCHHHC-------
T ss_pred hhhhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccchhhhhhccc-------
Confidence 23999999999999 999999999999999998899999999999999999887665432211
Q ss_pred cccchHHHHHHHHHHHHhhcCchhHhhccCcE
Q 005511 548 EKDSSYNRIKSLVTEELKQYFRPEFLNRLDEM 579 (693)
Q Consensus 548 ~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~ 579 (693)
..............+...|.|+|++|||.+
T Consensus 142 --~~~~~~~~~~~~~~~~~~f~pEf~~Ri~~i 171 (171)
T PF07724_consen 142 --EAIEQEQEEQIRDLVEYGFRPEFLGRIDVI 171 (171)
T ss_dssp --TCCHHHHCHHHHHHHHHTS-HHHHTTSSEE
T ss_pred --cccHHHHHHHHHHHHHcCCCHHHHccCCcC
Confidence 122223334455666777999999999754
No 38
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2e-22 Score=212.26 Aligned_cols=255 Identities=23% Similarity=0.371 Sum_probs=203.2
Q ss_pred HHHHHHHHhCCCccCCCcchhHHHHHHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHH
Q 005511 344 IQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELA 423 (693)
Q Consensus 344 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA 423 (693)
..+.+.+.+.+|+.+.+.++. ++...++.|.++-.|.++++++|.+.+.-.++.... +++ .++|+||||+|||++|
T Consensus 380 trNYLdwlt~LPWgk~S~En~-dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrgs~--qGk-IlCf~GPPGVGKTSI~ 455 (906)
T KOG2004|consen 380 TRNYLDWLTSLPWGKSSTENL-DLARAKEILDEDHYGMEDVKERILEFIAVGKLRGSV--QGK-ILCFVGPPGVGKTSIA 455 (906)
T ss_pred HHHHHHHHHhCCCCCCChhhh-hHHHHHHhhcccccchHHHHHHHHHHHHHHhhcccC--CCc-EEEEeCCCCCCcccHH
Confidence 366778889999999888754 477889999999999999999999998766543222 222 4889999999999999
Q ss_pred HHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCCcCcCccchhhHHHHcC--CCEEEEEccCcccCH----HHHHH
Q 005511 424 KALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRR--PYTVVLFDEIEKAHP----DVFNM 497 (693)
Q Consensus 424 ~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~--~~~vl~iDEid~l~~----~~~~~ 497 (693)
+.||+.+ +..|+++.++.+. +++++-||...|+|...++ +.+.+++. .+.+++|||+||+.. +-..+
T Consensus 456 kSIA~AL---nRkFfRfSvGG~t---DvAeIkGHRRTYVGAMPGk-iIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasA 528 (906)
T KOG2004|consen 456 KSIARAL---NRKFFRFSVGGMT---DVAEIKGHRRTYVGAMPGK-IIQCLKKVKTENPLILIDEVDKLGSGHQGDPASA 528 (906)
T ss_pred HHHHHHh---CCceEEEeccccc---cHHhhcccceeeeccCChH-HHHHHHhhCCCCceEEeehhhhhCCCCCCChHHH
Confidence 9999999 7789998888765 5778889999999998754 45666653 356999999999953 34578
Q ss_pred HHHHhhc---ceeeCCC-CCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHh
Q 005511 498 MLQILED---GRLTDSK-GRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFL 573 (693)
Q Consensus 498 Ll~~le~---~~~~~~~-~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~ 573 (693)
||.+|+- ..+.+.. .-.++.++++||||+|.-+. ++|+|+
T Consensus 529 LLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idt------------------------------------IP~pLl 572 (906)
T KOG2004|consen 529 LLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDT------------------------------------IPPPLL 572 (906)
T ss_pred HHHhcChhhccchhhhccccccchhheEEEEecccccc------------------------------------CChhhh
Confidence 8888863 4455544 56788999999999996554 899999
Q ss_pred hccCcEEEcCCCCHHHHHHHHHHHHHHHH-HHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHHHHHHH
Q 005511 574 NRLDEMIVFRQLTKLEVKEIADIMLKEVF-DRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDS 647 (693)
Q Consensus 574 ~R~~~~v~f~~l~~~~~~~i~~~~l~~~~-~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~~~ 647 (693)
+|+ .+|.+.-|..+|..+|++++|-... .......-.+.++++++..|+++ |....|+|.|++.|+.+....
T Consensus 573 DRM-EvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~-YcrEaGVRnLqk~iekI~Rk~ 645 (906)
T KOG2004|consen 573 DRM-EVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIER-YCREAGVRNLQKQIEKICRKV 645 (906)
T ss_pred hhh-heeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHH
Confidence 999 9999999999999999988875432 22222223477999999999886 899999999999999665543
No 39
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.1e-22 Score=199.44 Aligned_cols=199 Identities=24% Similarity=0.370 Sum_probs=150.6
Q ss_pred HhccccChHHHHHHHHHHHHHH--------hhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccc
Q 005511 374 LHKRVIGQDEAVKAISRAIRRA--------RVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEF 445 (693)
Q Consensus 374 l~~~v~g~~~~~~~l~~~~~~~--------~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~ 445 (693)
-+..|-|.++.++.|++++... ..|..+|+ ++|||||||||||++|+++|+.. +..|+++..+++
T Consensus 149 tY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPK----GVLLYGPPGTGKTLLAkAVA~~T---~AtFIrvvgSEl 221 (406)
T COG1222 149 TYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPK----GVLLYGPPGTGKTLLAKAVANQT---DATFIRVVGSEL 221 (406)
T ss_pred ChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCC----ceEeeCCCCCcHHHHHHHHHhcc---CceEEEeccHHH
Confidence 3466788888999998888543 34555543 59999999999999999999986 889999999999
Q ss_pred cchhhhhhhcCCCCCCcCcCcc--chhhHHHHcCCCEEEEEccCccc-----------CHHHHHHHHHHhhcceeeCCCC
Q 005511 446 MERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKA-----------HPDVFNMMLQILEDGRLTDSKG 512 (693)
Q Consensus 446 ~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~l-----------~~~~~~~Ll~~le~~~~~~~~~ 512 (693)
+.+ |+|+..+ +.+|..++...++||||||||.+ +.++|..|+++|..=.-.+
T Consensus 222 VqK------------YiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD--- 286 (406)
T COG1222 222 VQK------------YIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFD--- 286 (406)
T ss_pred HHH------------HhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCC---
Confidence 877 8887765 88999999999999999999987 4568888888875411011
Q ss_pred CeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHh--hccCcEEEcCCCCHHHH
Q 005511 513 RTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFL--NRLDEMIVFRQLTKLEV 590 (693)
Q Consensus 513 ~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~--~R~~~~v~f~~l~~~~~ 590 (693)
+..|+-+|++||..+. ++|+|+ +|||+.|.|+.++.+..
T Consensus 287 ---~~~nvKVI~ATNR~D~------------------------------------LDPALLRPGR~DRkIEfplPd~~gR 327 (406)
T COG1222 287 ---PRGNVKVIMATNRPDI------------------------------------LDPALLRPGRFDRKIEFPLPDEEGR 327 (406)
T ss_pred ---CCCCeEEEEecCCccc------------------------------------cChhhcCCCcccceeecCCCCHHHH
Confidence 2458999999997664 899999 89999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEeCHHH-HHHHHHhccCCCCCcchHHHHHHHHHHH
Q 005511 591 KEIADIMLKEVFDRLKTKDIELQVTERF-RERVVEEGYNPSYGARPLRRAIMRLLED 646 (693)
Q Consensus 591 ~~i~~~~l~~~~~~~~~~~~~l~~~~~~-~~~l~~~~~~~~~g~r~l~~~i~~~i~~ 646 (693)
.+|++.+-... .+++++ ++.|+. .....+..+|+.++..+=.-
T Consensus 328 ~~Il~IHtrkM-----------~l~~dvd~e~la~--~~~g~sGAdlkaictEAGm~ 371 (406)
T COG1222 328 AEILKIHTRKM-----------NLADDVDLELLAR--LTEGFSGADLKAICTEAGMF 371 (406)
T ss_pred HHHHHHHhhhc-----------cCccCcCHHHHHH--hcCCCchHHHHHHHHHHhHH
Confidence 99997665432 122222 234444 22334444677766655443
No 40
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.89 E-value=5.6e-22 Score=212.66 Aligned_cols=200 Identities=20% Similarity=0.252 Sum_probs=156.8
Q ss_pred CCCCCccCCHHHHHHHHHHH----------hcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccc
Q 005511 39 GKLDPVVGRQPQIERVVQIL----------GRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGL 108 (693)
Q Consensus 39 ~~~~~iiG~~~~~~~l~~~l----------~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 108 (693)
.+|+++.|.+..++.+.+.. +...++++||+||||||||++|+++|+.+ +.+++.++++.
T Consensus 225 ~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~----------~~~~~~l~~~~ 294 (489)
T CHL00195 225 EKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW----------QLPLLRLDVGK 294 (489)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEEhHH
Confidence 36889999998887766532 23567899999999999999999999998 78899999988
Q ss_pred cccCCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCC----hHhHHHHHhhhhc--CCCcEEEEEechHHH
Q 005511 109 LVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEG----AIDAANILKPSLA--RGELQCIGATTLDEY 182 (693)
Q Consensus 109 l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~----~~~~~~~L~~~l~--~~~v~vI~~t~~~~~ 182 (693)
+. .++.|+.+..++.+|..++...||||||||+|.++......+ ...+...+...+. ...++||+|||.+.
T Consensus 295 l~--~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~- 371 (489)
T CHL00195 295 LF--GGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNID- 371 (489)
T ss_pred hc--ccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChh-
Confidence 77 457899999999999999999999999999999976432221 2223334444443 45688999999987
Q ss_pred HhhhhcCHHHhc--cCC-ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhhhhHHHH
Q 005511 183 RKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDE 259 (693)
Q Consensus 183 ~~~~~l~~~l~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~ 259 (693)
.+|++++| ||+ .+.++.|+.++|.+||+.++.+.. .....+..+..+++.+.||.+ ++...++.+
T Consensus 372 ----~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~---~~~~~~~dl~~La~~T~GfSG-----AdI~~lv~e 439 (489)
T CHL00195 372 ----LLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFR---PKSWKKYDIKKLSKLSNKFSG-----AEIEQSIIE 439 (489)
T ss_pred ----hCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcC---CCcccccCHHHHHhhcCCCCH-----HHHHHHHHH
Confidence 79999988 998 899999999999999999887632 112345568889999999876 666666666
Q ss_pred HhhH
Q 005511 260 AGSR 263 (693)
Q Consensus 260 a~~~ 263 (693)
|+..
T Consensus 440 A~~~ 443 (489)
T CHL00195 440 AMYI 443 (489)
T ss_pred HHHH
Confidence 6543
No 41
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.89 E-value=3.3e-22 Score=206.37 Aligned_cols=226 Identities=19% Similarity=0.282 Sum_probs=176.8
Q ss_pred ccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCC
Q 005511 378 VIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGS 457 (693)
Q Consensus 378 v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~ 457 (693)
++|++.+++.+.+.+.+.... ..+|||+|++||||+++|++|+....+.+.||+.+||+.+......+.+||+
T Consensus 1 liG~S~~m~~~~~~~~~~a~~-------~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~ 73 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPL-------DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGH 73 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCC-------CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhcc
Confidence 478889999998888877522 1249999999999999999999988777889999999988765556678887
Q ss_pred CCC-CcCcCccchhhHHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhc
Q 005511 458 PPG-YVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKG 536 (693)
Q Consensus 458 ~~~-~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~ 536 (693)
..| +.|.... -.+.+..+.+|+|||||++.+++.+|..|+.+|+++.+...++......++++|++||.......
T Consensus 74 ~~g~~~ga~~~--~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~-- 149 (329)
T TIGR02974 74 EAGAFTGAQKR--HQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALA-- 149 (329)
T ss_pred ccccccCcccc--cCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHh--
Confidence 654 3343221 12445667789999999999999999999999999988766665555678999999985432111
Q ss_pred ccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCc-EEEcCCCC--HHHHHHHHHHHHHHHHHHHhcCCCe--
Q 005511 537 GRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDE-MIVFRQLT--KLEVKEIADIMLKEVFDRLKTKDIE-- 611 (693)
Q Consensus 537 ~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~-~v~f~~l~--~~~~~~i~~~~l~~~~~~~~~~~~~-- 611 (693)
....|+++|++||+. .|.+|||. .+|+..+++.++.++..++ +..
T Consensus 150 ---------------------------~~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~---~~~~~ 199 (329)
T TIGR02974 150 ---------------------------AEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMAREL---GLPLF 199 (329)
T ss_pred ---------------------------hcCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHh---CCCCC
Confidence 123388999999954 69999995 6899999999999877655 333
Q ss_pred EEeCHHHHHHHHHhccCCCCCcchHHHHHHHHHHH
Q 005511 612 LQVTERFRERVVEEGYNPSYGARPLRRAIMRLLED 646 (693)
Q Consensus 612 l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~~ 646 (693)
..+++++++.|..+.|++| +|+|+++|++++..
T Consensus 200 ~~ls~~a~~~L~~y~WPGN--vrEL~n~i~~~~~~ 232 (329)
T TIGR02974 200 PGFTPQAREQLLEYHWPGN--VRELKNVVERSVYR 232 (329)
T ss_pred CCcCHHHHHHHHhCCCCch--HHHHHHHHHHHHHh
Confidence 4699999999999666555 99999999987753
No 42
>CHL00181 cbbX CbbX; Provisional
Probab=99.89 E-value=5.8e-22 Score=200.30 Aligned_cols=224 Identities=20% Similarity=0.328 Sum_probs=159.1
Q ss_pred HHHHHHHHHHhccccChHHHHHHHHHHHHH-------HhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcC----C
Q 005511 365 DRLLKMEETLHKRVIGQDEAVKAISRAIRR-------ARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFG----S 433 (693)
Q Consensus 365 ~~~~~~~~~l~~~v~g~~~~~~~l~~~~~~-------~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~----~ 433 (693)
..+..+...|+++++|++.++++|.+.+.. ...|...+. +..+++|+||||||||++|+++|+.++. .
T Consensus 12 ~~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~-~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~ 90 (287)
T CHL00181 12 TQIQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSN-PGLHMSFTGSPGTGKTTVALKMADILYKLGYIK 90 (287)
T ss_pred cCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-CCceEEEECCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 346677888999999999999988776532 123444433 3346999999999999999999998743 2
Q ss_pred CcceeeeccccccchhhhhhhcCCCCCCcCcCccchhhHHHHcCCCEEEEEccCccc---------CHHHHHHHHHHhhc
Q 005511 434 EEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKA---------HPDVFNMMLQILED 504 (693)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~l---------~~~~~~~Ll~~le~ 504 (693)
..+++.++.+++... |+|.++. ...+.++++.++||||||++.+ .+++++.|++.|++
T Consensus 91 ~~~~~~v~~~~l~~~------------~~g~~~~-~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~ 157 (287)
T CHL00181 91 KGHLLTVTRDDLVGQ------------YIGHTAP-KTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMEN 157 (287)
T ss_pred CCceEEecHHHHHHH------------HhccchH-HHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhc
Confidence 345777765554322 6665542 3456677778899999999986 46789999999987
Q ss_pred ceeeCCCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCC
Q 005511 505 GRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQ 584 (693)
Q Consensus 505 ~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~ 584 (693)
+ ..++++|++++.... ..+. ..+|+|.+||+.++.|++
T Consensus 158 ~-----------~~~~~vI~ag~~~~~------------------------------~~~~-~~np~L~sR~~~~i~F~~ 195 (287)
T CHL00181 158 Q-----------RDDLVVIFAGYKDRM------------------------------DKFY-ESNPGLSSRIANHVDFPD 195 (287)
T ss_pred C-----------CCCEEEEEeCCcHHH------------------------------HHHH-hcCHHHHHhCCceEEcCC
Confidence 3 246778888653210 0000 157999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCHHH----HHHHHHhccCCCCC-cchHHHHHHHHHHHHHHHHHH
Q 005511 585 LTKLEVKEIADIMLKEVFDRLKTKDIELQVTERF----RERVVEEGYNPSYG-ARPLRRAIMRLLEDSMAEKML 653 (693)
Q Consensus 585 l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~----~~~l~~~~~~~~~g-~r~l~~~i~~~i~~~l~~~~l 653 (693)
|+.+++.+|+..++++.. ..+++++ .+++.+..+.+.+| +|.+++.+++++...-.+.+.
T Consensus 196 ~t~~el~~I~~~~l~~~~---------~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~~~~r~~~ 260 (287)
T CHL00181 196 YTPEELLQIAKIMLEEQQ---------YQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARMRQANRIFE 260 (287)
T ss_pred cCHHHHHHHHHHHHHHhc---------CCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999987642 2244444 44444444555566 999999999888765554444
No 43
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=8.3e-22 Score=209.27 Aligned_cols=202 Identities=23% Similarity=0.357 Sum_probs=159.0
Q ss_pred CCCCccCCHHHHHHHHHHHhc------------CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEecc
Q 005511 40 KLDPVVGRQPQIERVVQILGR------------RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMG 107 (693)
Q Consensus 40 ~~~~iiG~~~~~~~l~~~l~~------------~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 107 (693)
+++|+-|.++++..+++.+.- .++++||||||||||||.+|+++|.++ ...++.+...
T Consensus 670 ~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc----------sL~FlSVKGP 739 (953)
T KOG0736|consen 670 SWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC----------SLNFLSVKGP 739 (953)
T ss_pred chhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc----------eeeEEeecCH
Confidence 799999999999999886643 446899999999999999999999998 6778888888
Q ss_pred ccccCCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChH-----hHHHHHhhhhc------CCCcEEEEE
Q 005511 108 LLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAI-----DAANILKPSLA------RGELQCIGA 176 (693)
Q Consensus 108 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~-----~~~~~L~~~l~------~~~v~vI~~ 176 (693)
.+. -.|.|+.|++++++|+.|++..|||||+||+|.+.|.+...++. .+.+.|+..|+ ...++||+|
T Consensus 740 ELL--NMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGA 817 (953)
T KOG0736|consen 740 ELL--NMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGA 817 (953)
T ss_pred HHH--HHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEec
Confidence 887 67899999999999999999999999999999999987655432 34455554443 346999999
Q ss_pred echHHHHhhhhcCHHHhc--cCC-ccccCCCC-HHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchh
Q 005511 177 TTLDEYRKHIEKDPALER--RFQ-PVKVPEPS-VDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDK 252 (693)
Q Consensus 177 t~~~~~~~~~~l~~~l~~--Rf~-~i~~~~p~-~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 252 (693)
||+|+ -+||+|+| ||+ .+.+.++. .+.+..+|+.+.+++....+++ +..+|+.+.-. +...+
T Consensus 818 TNRPD-----LLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVd-----L~eiAk~cp~~----~TGAD 883 (953)
T KOG0736|consen 818 TNRPD-----LLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVD-----LVEIAKKCPPN----MTGAD 883 (953)
T ss_pred CCCcc-----ccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcC-----HHHHHhhCCcC----CchhH
Confidence 99998 58999999 999 66776665 4678889999988865444443 45556555332 33467
Q ss_pred hhhHHHHHhhHHHHh
Q 005511 253 AIDLIDEAGSRVRLR 267 (693)
Q Consensus 253 ~~~ll~~a~~~~~~~ 267 (693)
...+|..|...+..|
T Consensus 884 lYsLCSdA~l~AikR 898 (953)
T KOG0736|consen 884 LYSLCSDAMLAAIKR 898 (953)
T ss_pred HHHHHHHHHHHHHHH
Confidence 778887777655443
No 44
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.88 E-value=7.2e-22 Score=189.73 Aligned_cols=207 Identities=18% Similarity=0.206 Sum_probs=161.1
Q ss_pred HHhhhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEecc
Q 005511 28 YGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMG 107 (693)
Q Consensus 28 ~~~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 107 (693)
...-|+++|||++|++++||+.++..|...+...-.+|+|||||||||||+.|+++|+++++. .+....+...+.+
T Consensus 22 ~~~swteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~----~~~~~rvl~lnaS 97 (346)
T KOG0989|consen 22 KHRSWTEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCE----QLFPCRVLELNAS 97 (346)
T ss_pred CccchHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCc----cccccchhhhccc
Confidence 445699999999999999999999999999998888999999999999999999999999761 1123445555554
Q ss_pred ccccCCcccchHHHHHHHHHHHHH-----hCCC-eEEEEeccchhhhCCCCCChHhHHHHHhhhhcC--CCcEEEEEech
Q 005511 108 LLVAGTKYRGEFEERLKKLMEEIK-----QSDE-IILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--GELQCIGATTL 179 (693)
Q Consensus 108 ~l~~~~~~~g~~~~~l~~~~~~~~-----~~~~-~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~~t~~ 179 (693)
...+ .....+-...+..+..... .++| .|++|||+|.|. .+++++|++.+++ ..+++|++||.
T Consensus 98 derG-isvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt--------sdaq~aLrr~mE~~s~~trFiLIcny 168 (346)
T KOG0989|consen 98 DERG-ISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMT--------SDAQAALRRTMEDFSRTTRFILICNY 168 (346)
T ss_pred cccc-ccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhh--------HHHHHHHHHHHhccccceEEEEEcCC
Confidence 4322 1111111112222222111 1222 699999999994 5589999999985 56889999999
Q ss_pred HHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhhhhHHHH
Q 005511 180 DEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDE 259 (693)
Q Consensus 180 ~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~ 259 (693)
.+ .+...+.||++.+.|++...+.....|+.++.+ .++.+++++++.++..++|.+ ++|+..|+.
T Consensus 169 ls-----rii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~----E~v~~d~~al~~I~~~S~GdL------R~Ait~Lqs 233 (346)
T KOG0989|consen 169 LS-----RIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASK----EGVDIDDDALKLIAKISDGDL------RRAITTLQS 233 (346)
T ss_pred hh-----hCChHHHhhHHHhcCCCcchHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCcH------HHHHHHHHH
Confidence 88 789999999999999999999998988888774 789999999999999999986 778888876
Q ss_pred Hhh
Q 005511 260 AGS 262 (693)
Q Consensus 260 a~~ 262 (693)
+..
T Consensus 234 ls~ 236 (346)
T KOG0989|consen 234 LSL 236 (346)
T ss_pred hhc
Confidence 643
No 45
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.88 E-value=2.9e-21 Score=203.05 Aligned_cols=199 Identities=21% Similarity=0.296 Sum_probs=154.0
Q ss_pred CCCCCccCCHHHHHHHHHHHh-------------cCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEe
Q 005511 39 GKLDPVVGRQPQIERVVQILG-------------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLD 105 (693)
Q Consensus 39 ~~~~~iiG~~~~~~~l~~~l~-------------~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 105 (693)
-+++++.|.+.+++.+.+.+. ..++.++||+||||||||++|+++|+.+ +.+++.+.
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l----------~~~fi~i~ 211 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT----------TATFIRVV 211 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc----------CCCEEEEe
Confidence 378899999999998887543 2467899999999999999999999987 66778887
Q ss_pred ccccccCCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCC---ChHhHHHHHhhhhc-------CCCcEEEE
Q 005511 106 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAE---GAIDAANILKPSLA-------RGELQCIG 175 (693)
Q Consensus 106 ~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~---~~~~~~~~L~~~l~-------~~~v~vI~ 175 (693)
++.+. ..+.|..+..++.+|..+....|+||||||+|.++..+... ........+..++. ..++.+|+
T Consensus 212 ~s~l~--~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~ 289 (398)
T PTZ00454 212 GSEFV--QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIM 289 (398)
T ss_pred hHHHH--HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEE
Confidence 76665 45677788889999999999999999999999997653211 12233344443332 35688999
Q ss_pred EechHHHHhhhhcCHHHhc--cCC-ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchh
Q 005511 176 ATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDK 252 (693)
Q Consensus 176 ~t~~~~~~~~~~l~~~l~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 252 (693)
+||.++ .+|+++++ ||+ .|+|+.|+.++|..||+.++.+.... .+-.+..++..+.||.+ ++
T Consensus 290 aTN~~d-----~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~-----~dvd~~~la~~t~g~sg-----aD 354 (398)
T PTZ00454 290 ATNRAD-----TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLS-----EEVDLEDFVSRPEKISA-----AD 354 (398)
T ss_pred ecCCch-----hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCC-----cccCHHHHHHHcCCCCH-----HH
Confidence 999987 79999998 998 89999999999999999887653211 12246677888877754 77
Q ss_pred hhhHHHHHhhHH
Q 005511 253 AIDLIDEAGSRV 264 (693)
Q Consensus 253 ~~~ll~~a~~~~ 264 (693)
...++.+|...+
T Consensus 355 I~~l~~eA~~~A 366 (398)
T PTZ00454 355 IAAICQEAGMQA 366 (398)
T ss_pred HHHHHHHHHHHH
Confidence 888888887654
No 46
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.87 E-value=3.2e-21 Score=204.31 Aligned_cols=199 Identities=27% Similarity=0.368 Sum_probs=155.1
Q ss_pred CCCCCccCCHHHHHHHHHHHh-------------cCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEe
Q 005511 39 GKLDPVVGRQPQIERVVQILG-------------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLD 105 (693)
Q Consensus 39 ~~~~~iiG~~~~~~~l~~~l~-------------~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 105 (693)
-+++++.|++++++.+.+.+. ..++.++||+||||||||++|+++|+.+ +.+++.++
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~----------~~~~i~v~ 197 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET----------NATFIRVV 197 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh----------CCCEEEee
Confidence 367889999999999887652 2567899999999999999999999998 66788888
Q ss_pred ccccccCCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCC---ChHhHHHHHhhhh---c----CCCcEEEE
Q 005511 106 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAE---GAIDAANILKPSL---A----RGELQCIG 175 (693)
Q Consensus 106 ~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~---~~~~~~~~L~~~l---~----~~~v~vI~ 175 (693)
++.+. ..+.|..+..++.+|..+....|+||||||+|.++..+... +..+....+..++ + .+.+.||+
T Consensus 198 ~~~l~--~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~ 275 (389)
T PRK03992 198 GSELV--QKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIA 275 (389)
T ss_pred hHHHh--HhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEE
Confidence 88776 45677788889999999998899999999999998654322 2233444444444 2 35789999
Q ss_pred EechHHHHhhhhcCHHHhc--cCC-ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchh
Q 005511 176 ATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDK 252 (693)
Q Consensus 176 ~t~~~~~~~~~~l~~~l~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 252 (693)
+||.++ .+|+++++ ||+ .|.||.|+.++|.+||+.++...... .+..+..++..+.||.+ ++
T Consensus 276 aTn~~~-----~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~-----~~~~~~~la~~t~g~sg-----ad 340 (389)
T PRK03992 276 ATNRID-----ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA-----DDVDLEELAELTEGASG-----AD 340 (389)
T ss_pred ecCChh-----hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC-----CcCCHHHHHHHcCCCCH-----HH
Confidence 999987 68999997 998 89999999999999999877643211 12346778888887754 77
Q ss_pred hhhHHHHHhhHH
Q 005511 253 AIDLIDEAGSRV 264 (693)
Q Consensus 253 ~~~ll~~a~~~~ 264 (693)
...++.+|...+
T Consensus 341 l~~l~~eA~~~a 352 (389)
T PRK03992 341 LKAICTEAGMFA 352 (389)
T ss_pred HHHHHHHHHHHH
Confidence 778888877654
No 47
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.87 E-value=1.3e-21 Score=182.63 Aligned_cols=206 Identities=23% Similarity=0.365 Sum_probs=151.6
Q ss_pred HHHHHhccccChHHHHHHHHHHHHH---H-hhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccc
Q 005511 370 MEETLHKRVIGQDEAVKAISRAIRR---A-RVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEF 445 (693)
Q Consensus 370 ~~~~l~~~v~g~~~~~~~l~~~~~~---~-~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~ 445 (693)
..+..+.+++||++++..-+-.++. . +.+-..|+ ++||+||||||||++|+++|+.. +.|++.++..++
T Consensus 115 ~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPk----nVLFyGppGTGKTm~Akalane~---kvp~l~vkat~l 187 (368)
T COG1223 115 ISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPK----NVLFYGPPGTGKTMMAKALANEA---KVPLLLVKATEL 187 (368)
T ss_pred hccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcc----eeEEECCCCccHHHHHHHHhccc---CCceEEechHHH
Confidence 3445578899999998654443332 2 12333332 69999999999999999999987 889999988777
Q ss_pred cchhhhhhhcCCCCCCcCcCcc--chhhHHHHcCCCEEEEEccCcccC------------HHHHHHHHHHhhcceeeCCC
Q 005511 446 MERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKAH------------PDVFNMMLQILEDGRLTDSK 511 (693)
Q Consensus 446 ~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~l~------------~~~~~~Ll~~le~~~~~~~~ 511 (693)
... |+|.... +.+.+.++++.+||+||||+|.+. .++.|+||+.|++-.
T Consensus 188 iGe------------hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~----- 250 (368)
T COG1223 188 IGE------------HVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIK----- 250 (368)
T ss_pred HHH------------HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcc-----
Confidence 654 7776543 678889999999999999999873 358999999998622
Q ss_pred CCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHH
Q 005511 512 GRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVK 591 (693)
Q Consensus 512 ~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~ 591 (693)
....++.|++||...- ++|++++||..-|.|..++.++..
T Consensus 251 ----eneGVvtIaaTN~p~~------------------------------------LD~aiRsRFEeEIEF~LP~~eEr~ 290 (368)
T COG1223 251 ----ENEGVVTIAATNRPEL------------------------------------LDPAIRSRFEEEIEFKLPNDEERL 290 (368)
T ss_pred ----cCCceEEEeecCChhh------------------------------------cCHHHHhhhhheeeeeCCChHHHH
Confidence 2235789999996653 899999999989999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHHHHHHHHHHHHHh
Q 005511 592 EIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLA 654 (693)
Q Consensus 592 ~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~~~l~~~~l~ 654 (693)
+|++.+++.+ .+.++.. ++++++. ....+.|++. ++.+..+|.+++..
T Consensus 291 ~ile~y~k~~---------Plpv~~~-~~~~~~~--t~g~SgRdik---ekvlK~aLh~Ai~e 338 (368)
T COG1223 291 EILEYYAKKF---------PLPVDAD-LRYLAAK--TKGMSGRDIK---EKVLKTALHRAIAE 338 (368)
T ss_pred HHHHHHHHhC---------CCccccC-HHHHHHH--hCCCCchhHH---HHHHHHHHHHHHHh
Confidence 9998887642 2334444 5666653 4445566554 34455566666653
No 48
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.87 E-value=5.7e-21 Score=193.47 Aligned_cols=222 Identities=20% Similarity=0.299 Sum_probs=159.5
Q ss_pred HHHHHHHHHhccccChHHHHHHHHHHHHHH-------hhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCC----C
Q 005511 366 RLLKMEETLHKRVIGQDEAVKAISRAIRRA-------RVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGS----E 434 (693)
Q Consensus 366 ~~~~~~~~l~~~v~g~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~----~ 434 (693)
.+.++.+.+...++|.+.+++.|.+.+... ..|... ..|..+++|+||||||||++|+++|+.+... .
T Consensus 12 ~~~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~-~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~ 90 (284)
T TIGR02880 12 GITEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQRLGLAS-AAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRK 90 (284)
T ss_pred cHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCc-CCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCccc
Confidence 355667778888999999999987765432 233332 3345579999999999999999999987432 2
Q ss_pred cceeeeccccccchhhhhhhcCCCCCCcCcCccchhhHHHHcCCCEEEEEccCccc---------CHHHHHHHHHHhhcc
Q 005511 435 EAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKA---------HPDVFNMMLQILEDG 505 (693)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~l---------~~~~~~~Ll~~le~~ 505 (693)
.+++.++++++... |.|.++ ..+.+.++++.++||||||++.+ +..+++.|++.|+++
T Consensus 91 ~~~v~v~~~~l~~~------------~~g~~~-~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~ 157 (284)
T TIGR02880 91 GHLVSVTRDDLVGQ------------YIGHTA-PKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQ 157 (284)
T ss_pred ceEEEecHHHHhHh------------hcccch-HHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcC
Confidence 46887776554321 555543 33456677778899999999977 356899999999874
Q ss_pred eeeCCCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCC
Q 005511 506 RLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQL 585 (693)
Q Consensus 506 ~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l 585 (693)
..++++|++++.... +..-.++|+|.+||+..+.|++|
T Consensus 158 -----------~~~~~vI~a~~~~~~-------------------------------~~~~~~np~L~sR~~~~i~fp~l 195 (284)
T TIGR02880 158 -----------RDDLVVILAGYKDRM-------------------------------DSFFESNPGFSSRVAHHVDFPDY 195 (284)
T ss_pred -----------CCCEEEEEeCCcHHH-------------------------------HHHHhhCHHHHhhCCcEEEeCCc
Confidence 246778888763210 00011589999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHh-----ccCCCCCcchHHHHHHHHHHHHHHHHH
Q 005511 586 TKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEE-----GYNPSYGARPLRRAIMRLLEDSMAEKM 652 (693)
Q Consensus 586 ~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~-----~~~~~~g~r~l~~~i~~~i~~~l~~~~ 652 (693)
+.+|+.+|+..++++.. ..+++++.+.+..+ ..+|..|+|++++.+++++...-.+..
T Consensus 196 ~~edl~~I~~~~l~~~~---------~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~~~~r~~ 258 (284)
T TIGR02880 196 SEAELLVIAGLMLKEQQ---------YRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLRQANRLF 258 (284)
T ss_pred CHHHHHHHHHHHHHHhc---------cccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999887642 34777888777664 114445599999999988776444433
No 49
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=6.2e-22 Score=188.17 Aligned_cols=187 Identities=24% Similarity=0.343 Sum_probs=154.6
Q ss_pred CCCCCccCCHHHHHHHHHHHh------------cCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEec
Q 005511 39 GKLDPVVGRQPQIERVVQILG------------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM 106 (693)
Q Consensus 39 ~~~~~iiG~~~~~~~l~~~l~------------~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 106 (693)
-.++++.|.+..++.|.+.+- +.+.+++||||||||||+.||+++|.+. +..++.++.
T Consensus 130 VkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA----------nSTFFSvSS 199 (439)
T KOG0739|consen 130 VKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA----------NSTFFSVSS 199 (439)
T ss_pred CchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc----------CCceEEeeh
Confidence 378999999999999998642 2456899999999999999999999987 678999999
Q ss_pred cccccCCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHH----HHHhhhh----cCCCcEEEEEec
Q 005511 107 GLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAA----NILKPSL----ARGELQCIGATT 178 (693)
Q Consensus 107 ~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~----~~L~~~l----~~~~v~vI~~t~ 178 (693)
+++. ++|.|+.+..++.+|..+++..|.|+||||||.++.+++.+.+...- .+|.++- ++..+.|+++||
T Consensus 200 SDLv--SKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATN 277 (439)
T KOG0739|consen 200 SDLV--SKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATN 277 (439)
T ss_pred HHHH--HHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCC
Confidence 9998 78999999999999999999999999999999999876665433221 1222221 245688899988
Q ss_pred hHHHHhhhhcCHHHhccCC-ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcc
Q 005511 179 LDEYRKHIEKDPALERRFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISD 246 (693)
Q Consensus 179 ~~~~~~~~~l~~~l~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 246 (693)
-+= .+|.+++|||. .|.+|.|....|..+++..+.. ....+++..+..+++.+.||.+.
T Consensus 278 iPw-----~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~----tp~~LT~~d~~eL~~kTeGySGs 337 (439)
T KOG0739|consen 278 IPW-----VLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGD----TPHVLTEQDFKELARKTEGYSGS 337 (439)
T ss_pred Cch-----hHHHHHHHHhhcceeccCCcHHHhhhhheeccCC----CccccchhhHHHHHhhcCCCCcC
Confidence 763 79999999998 9999999999999998866543 44567889999999999999764
No 50
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1e-21 Score=193.90 Aligned_cols=196 Identities=24% Similarity=0.369 Sum_probs=160.6
Q ss_pred CCCCccCCHHHHHHHHHHHhc--------------CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEe
Q 005511 40 KLDPVVGRQPQIERVVQILGR--------------RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLD 105 (693)
Q Consensus 40 ~~~~iiG~~~~~~~l~~~l~~--------------~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 105 (693)
+|++|-|.+.++.++.+.+-- .++.+|||+||||||||++|+++|++. +..++-+.
T Consensus 90 ~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea----------ga~fInv~ 159 (386)
T KOG0737|consen 90 SFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA----------GANFINVS 159 (386)
T ss_pred ehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHc----------CCCcceee
Confidence 788999999999998885421 456899999999999999999999998 77888899
Q ss_pred ccccccCCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhh-hh-------c--CCCcEEEE
Q 005511 106 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKP-SL-------A--RGELQCIG 175 (693)
Q Consensus 106 ~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~-~l-------~--~~~v~vI~ 175 (693)
++.+.+ +|-|+.+..++.+|..+.+-.|+++||||+|.++..+ .....++...++. ++ . +..+.|++
T Consensus 160 ~s~lt~--KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R-~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlg 236 (386)
T KOG0737|consen 160 VSNLTS--KWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR-RSTDHEATAMMKNEFMALWDGLSSKDSERVLVLG 236 (386)
T ss_pred ccccch--hhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc-ccchHHHHHHHHHHHHHHhccccCCCCceEEEEe
Confidence 888884 7789999999999999999999999999999999887 4444555444432 22 2 23489999
Q ss_pred EechHHHHhhhhcCHHHhccCC-ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhhh
Q 005511 176 ATTLDEYRKHIEKDPALERRFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAI 254 (693)
Q Consensus 176 ~t~~~~~~~~~~l~~~l~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 254 (693)
|||+|. ++|.++.||++ .+.++.|+..+|.+||+.+++.-... ++-.+..+++++.||.+ .+..
T Consensus 237 ATNRP~-----DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e-----~~vD~~~iA~~t~GySG-----SDLk 301 (386)
T KOG0737|consen 237 ATNRPF-----DLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE-----DDVDLDEIAQMTEGYSG-----SDLK 301 (386)
T ss_pred CCCCCc-----cHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccC-----cccCHHHHHHhcCCCcH-----HHHH
Confidence 999987 89999999998 89999999999999999988743222 33457889999999976 6777
Q ss_pred hHHHHHhhH
Q 005511 255 DLIDEAGSR 263 (693)
Q Consensus 255 ~ll~~a~~~ 263 (693)
.+|..|...
T Consensus 302 elC~~Aa~~ 310 (386)
T KOG0737|consen 302 ELCRLAALR 310 (386)
T ss_pred HHHHHHhHh
Confidence 777766543
No 51
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.87 E-value=2.4e-21 Score=198.70 Aligned_cols=229 Identities=18% Similarity=0.272 Sum_probs=180.8
Q ss_pred HHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcC-CCcceeeeccccccchh
Q 005511 371 EETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFG-SEEAMIRLDMSEFMERH 449 (693)
Q Consensus 371 ~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~-~~~~~~~~~~~~~~~~~ 449 (693)
....+..++|.+...+.+.+.++... ... .++|+.|++||||+.+|++|+...-+ ...||+.+||+.+.+..
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~~a------p~~-~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~ 145 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKAYA------PSG-LPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENL 145 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHhhC------CCC-CcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCH
Confidence 34456789999999999999888732 111 25999999999999999999966655 58999999999999887
Q ss_pred hhhhhcCCCCC-CcCcCccchhhHHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCC
Q 005511 450 TVSKLIGSPPG-YVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNV 528 (693)
Q Consensus 450 ~~~~l~g~~~~-~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~ 528 (693)
-.+.|||+..| +.|....+ .+.+..+.+|+||+|||..+++..|..|+++||+|.++..++......++++|++||.
T Consensus 146 ~~~eLFG~~kGaftGa~~~k--~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~ 223 (403)
T COG1221 146 QEAELFGHEKGAFTGAQGGK--AGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTE 223 (403)
T ss_pred HHHHHhccccceeecccCCc--CchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCceeeecccc
Confidence 77789998776 66633322 3667788999999999999999999999999999999977777777789999999985
Q ss_pred ChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCc--hhHhh-ccCcEEEcCCC--CHHHHHHHHHHHHHHHHH
Q 005511 529 GSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFR--PEFLN-RLDEMIVFRQL--TKLEVKEIADIMLKEVFD 603 (693)
Q Consensus 529 ~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~--~~l~~-R~~~~v~f~~l--~~~~~~~i~~~~l~~~~~ 603 (693)
....- +. .+|.+ |+..+|..||| ..+|+..+++.++..+..
T Consensus 224 ~l~~~----------------------------------~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~ 269 (403)
T COG1221 224 DLEEA----------------------------------VLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEAR 269 (403)
T ss_pred CHHHH----------------------------------HHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHH
Confidence 43210 22 36777 66677999999 567888888888888777
Q ss_pred HHhcCCCeEE-eCHHHHHHHHHhccCCCCCcchHHHHHHHHHHHH
Q 005511 604 RLKTKDIELQ-VTERFRERVVEEGYNPSYGARPLRRAIMRLLEDS 647 (693)
Q Consensus 604 ~~~~~~~~l~-~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~~~ 647 (693)
+. +..+. .++++...|..+.|++| .|+|++.|+..+...
T Consensus 270 ~l---~~~~~~~~~~a~~~L~~y~~pGN--irELkN~Ve~~~~~~ 309 (403)
T COG1221 270 RL---GLPLSVDSPEALRALLAYDWPGN--IRELKNLVERAVAQA 309 (403)
T ss_pred Hc---CCCCCCCCHHHHHHHHhCCCCCc--HHHHHHHHHHHHHHh
Confidence 66 44333 34699999998656555 999999999887653
No 52
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.87 E-value=7.2e-21 Score=196.87 Aligned_cols=230 Identities=20% Similarity=0.273 Sum_probs=175.5
Q ss_pred hccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhh
Q 005511 375 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 454 (693)
Q Consensus 375 ~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l 454 (693)
++.++|.+..+..+.+.+.+.... ..+||++|++||||+++|++|+......+.+|+.+||+.+........+
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~~-------~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~l 77 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAPL-------DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSEL 77 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhCC-------CCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHH
Confidence 456899999999999999887522 1249999999999999999999887667789999999988654445568
Q ss_pred cCCCCC-CcCcCccchhhHHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhh
Q 005511 455 IGSPPG-YVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVI 533 (693)
Q Consensus 455 ~g~~~~-~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i 533 (693)
||+..+ +.|.... -.+.+..+.+|+|||||++.+++.+|..|+.+++++.+...++......++++|++|+.....+
T Consensus 78 fg~~~~~~~g~~~~--~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l 155 (326)
T PRK11608 78 FGHEAGAFTGAQKR--HPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAM 155 (326)
T ss_pred ccccccccCCcccc--cCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHH
Confidence 887544 3333221 1234566778999999999999999999999999998775555444445899999998543321
Q ss_pred hhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccC-cEEEcCCC--CHHHHHHHHHHHHHHHHHHHhcCCC
Q 005511 534 EKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLD-EMIVFRQL--TKLEVKEIADIMLKEVFDRLKTKDI 610 (693)
Q Consensus 534 ~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~-~~v~f~~l--~~~~~~~i~~~~l~~~~~~~~~~~~ 610 (693)
. ..+.|.++|++||+ ..|.++|| ..+|+..+++.++.++..++.. .+
T Consensus 156 ~-----------------------------~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~-~~ 205 (326)
T PRK11608 156 V-----------------------------AEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGL-PL 205 (326)
T ss_pred H-----------------------------HcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCC-CC
Confidence 1 12338899999994 46999999 4579999999999887665522 11
Q ss_pred eEEeCHHHHHHHHHhccCCCCCcchHHHHHHHHHH
Q 005511 611 ELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLE 645 (693)
Q Consensus 611 ~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~ 645 (693)
...+++++++.|..+.|++| .|+|++++++++.
T Consensus 206 ~~~~s~~al~~L~~y~WPGN--vrEL~~vl~~a~~ 238 (326)
T PRK11608 206 FPGFTERARETLLNYRWPGN--IRELKNVVERSVY 238 (326)
T ss_pred CCCCCHHHHHHHHhCCCCcH--HHHHHHHHHHHHH
Confidence 13699999999999666655 9999999998775
No 53
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.86 E-value=6.1e-21 Score=178.81 Aligned_cols=187 Identities=18% Similarity=0.316 Sum_probs=123.9
Q ss_pred HHHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccc
Q 005511 368 LKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFME 447 (693)
Q Consensus 368 ~~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~ 447 (693)
..++...+++++||++.+..+.-.++.+... ..+..|++||||||+|||++|+.||+.+ +.+|.....+.+..
T Consensus 16 ~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r----~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~~~sg~~i~k 88 (233)
T PF05496_consen 16 ERLRPKSLDEFIGQEHLKGNLKILIRAAKKR----GEALDHMLFYGPPGLGKTTLARIIANEL---GVNFKITSGPAIEK 88 (233)
T ss_dssp HHTS-SSCCCS-S-HHHHHHHHHHHHHHHCT----TS---EEEEESSTTSSHHHHHHHHHHHC---T--EEEEECCC--S
T ss_pred HhcCCCCHHHccCcHHHHhhhHHHHHHHHhc----CCCcceEEEECCCccchhHHHHHHHhcc---CCCeEeccchhhhh
Confidence 3455566789999999999988888776432 2344589999999999999999999997 66666544432211
Q ss_pred hhhhhhhcCCCCCCcCcCccchhhHHHHc-CCCEEEEEccCcccCHHHHHHHHHHhhcceeeC--CCC-----CeeecCC
Q 005511 448 RHTVSKLIGSPPGYVGYTEGGQLTEAVRR-RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTD--SKG-----RTVDFKN 519 (693)
Q Consensus 448 ~~~~~~l~g~~~~~~g~~~~~~l~~~~~~-~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~--~~~-----~~~~~~~ 519 (693)
.+.+...+.. ..+.|||||||+++++.+|+.|+..||+|.+.. ..| ..++.+.
T Consensus 89 -------------------~~dl~~il~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 89 -------------------AGDLAAILTNLKEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp -------------------CHHHHHHHHT--TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred -------------------HHHHHHHHHhcCCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 1233333333 346799999999999999999999999999743 222 2455678
Q ss_pred eEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHHHH
Q 005511 520 TLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLK 599 (693)
Q Consensus 520 ~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l~ 599 (693)
+.+|.+|+.... ++++|.+||..+..+..|+.+++.+|+.+...
T Consensus 150 FTligATTr~g~------------------------------------ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~ 193 (233)
T PF05496_consen 150 FTLIGATTRAGL------------------------------------LSSPLRDRFGIVLRLEFYSEEELAKIVKRSAR 193 (233)
T ss_dssp -EEEEEESSGCC------------------------------------TSHCCCTTSSEEEE----THHHHHHHHHHCCH
T ss_pred ceEeeeeccccc------------------------------------cchhHHhhcceecchhcCCHHHHHHHHHHHHH
Confidence 889998874432 78999999977789999999999999965432
Q ss_pred HHHHHHhcCCCeEEeCHHHHHHHHHh
Q 005511 600 EVFDRLKTKDIELQVTERFRERVVEE 625 (693)
Q Consensus 600 ~~~~~~~~~~~~l~~~~~~~~~l~~~ 625 (693)
-..+.+++++..+++..
T Consensus 194 ---------~l~i~i~~~~~~~Ia~r 210 (233)
T PF05496_consen 194 ---------ILNIEIDEDAAEEIARR 210 (233)
T ss_dssp ---------CTT-EE-HHHHHHHHHC
T ss_pred ---------HhCCCcCHHHHHHHHHh
Confidence 23467999999999985
No 54
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=9.2e-21 Score=175.86 Aligned_cols=197 Identities=24% Similarity=0.346 Sum_probs=154.0
Q ss_pred CCCCccCCHHHHHHHHHH-------------HhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEec
Q 005511 40 KLDPVVGRQPQIERVVQI-------------LGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM 106 (693)
Q Consensus 40 ~~~~iiG~~~~~~~l~~~-------------l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 106 (693)
+.+=+-|.+.+++.+.+. |....|.++|||||||||||.+|+++|++. .+.++.++.
T Consensus 145 tYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht----------~c~firvsg 214 (404)
T KOG0728|consen 145 TYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------DCTFIRVSG 214 (404)
T ss_pred HHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc----------ceEEEEech
Confidence 444456668888876654 455778999999999999999999999987 788999999
Q ss_pred cccccCCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCC---CCCChHhHHHHHhhhhc-------CCCcEEEEE
Q 005511 107 GLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAG---AAEGAIDAANILKPSLA-------RGELQCIGA 176 (693)
Q Consensus 107 ~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~---~~~~~~~~~~~L~~~l~-------~~~v~vI~~ 176 (693)
+.+. .+|.|+-...++.+|--++.+.|.|+|+||+|.+..++ +..++.+++..++.++. ...+.+|.+
T Consensus 215 selv--qk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvima 292 (404)
T KOG0728|consen 215 SELV--QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMA 292 (404)
T ss_pred HHHH--HHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEe
Confidence 9888 67889888999999999999999999999999997543 23346667776666664 456999999
Q ss_pred echHHHHhhhhcCHHHhc--cCC-ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhh
Q 005511 177 TTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKA 253 (693)
Q Consensus 177 t~~~~~~~~~~l~~~l~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 253 (693)
||+.+ -+||++++ |++ .|+||+|+.+.|.+||+...++.....+++ +..+|..-.|..+ ...
T Consensus 293 tnrid-----ild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~-----l~kiaekm~gasg-----aev 357 (404)
T KOG0728|consen 293 TNRID-----ILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGIN-----LRKIAEKMPGASG-----AEV 357 (404)
T ss_pred ccccc-----cccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccC-----HHHHHHhCCCCcc-----chh
Confidence 99987 58999999 898 899999999999999998887765555554 3445544434322 455
Q ss_pred hhHHHHHhhH
Q 005511 254 IDLIDEAGSR 263 (693)
Q Consensus 254 ~~ll~~a~~~ 263 (693)
...|.+|...
T Consensus 358 k~vcteagm~ 367 (404)
T KOG0728|consen 358 KGVCTEAGMY 367 (404)
T ss_pred hhhhhhhhHH
Confidence 5566666543
No 55
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.86 E-value=7.7e-21 Score=200.79 Aligned_cols=204 Identities=22% Similarity=0.301 Sum_probs=156.2
Q ss_pred hhhhhcCCCCCccCCHHHHHHHHHHHh-------------cCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCc
Q 005511 33 TKLAEEGKLDPVVGRQPQIERVVQILG-------------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGK 99 (693)
Q Consensus 33 ~~~~~~~~~~~iiG~~~~~~~l~~~l~-------------~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~ 99 (693)
.++..+.+|+++.|.+++++.+.+.+. ..++.++||+||||||||++|+++|+.+ +.
T Consensus 174 ~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el----------~~ 243 (438)
T PTZ00361 174 VDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET----------SA 243 (438)
T ss_pred cccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh----------CC
Confidence 344455689999999999999888653 2467899999999999999999999988 55
Q ss_pred eEEEEeccccccCCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCC---CChHhHHHHHhhhh-------cCC
Q 005511 100 KVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAA---EGAIDAANILKPSL-------ARG 169 (693)
Q Consensus 100 ~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~---~~~~~~~~~L~~~l-------~~~ 169 (693)
+++.+..+.+. ..+.|.....++.+|..+....|+||||||+|.+...+.. .+..+....+..++ ...
T Consensus 244 ~fi~V~~seL~--~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~ 321 (438)
T PTZ00361 244 TFLRVVGSELI--QKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRG 321 (438)
T ss_pred CEEEEecchhh--hhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccC
Confidence 67778777765 4567888888999999999889999999999999865422 22333333333333 245
Q ss_pred CcEEEEEechHHHHhhhhcCHHHhc--cCC-ccccCCCCHHHHHHHHHHHHHhHhhhcCcccCh-HHHHHHHHhhhhhhc
Q 005511 170 ELQCIGATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTD-EALVSAAQLSYQYIS 245 (693)
Q Consensus 170 ~v~vI~~t~~~~~~~~~~l~~~l~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~-~~l~~l~~~~~~~~~ 245 (693)
.+.||++||.++ .+|+++.+ ||+ .|+|+.|+.++|.+||+.++.+. .+.+ ..+..++..+.+|.+
T Consensus 322 ~V~VI~ATNr~d-----~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~------~l~~dvdl~~la~~t~g~sg 390 (438)
T PTZ00361 322 DVKVIMATNRIE-----SLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKM------TLAEDVDLEEFIMAKDELSG 390 (438)
T ss_pred CeEEEEecCChH-----HhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcC------CCCcCcCHHHHHHhcCCCCH
Confidence 789999999987 68999986 998 89999999999999999877653 2222 246677777777754
Q ss_pred ccCCchhhhhHHHHHhhHH
Q 005511 246 DRFLPDKAIDLIDEAGSRV 264 (693)
Q Consensus 246 ~~~~~~~~~~ll~~a~~~~ 264 (693)
++...++.+|+..+
T Consensus 391 -----AdI~~i~~eA~~~A 404 (438)
T PTZ00361 391 -----ADIKAICTEAGLLA 404 (438)
T ss_pred -----HHHHHHHHHHHHHH
Confidence 66777777776654
No 56
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=5.7e-21 Score=178.27 Aligned_cols=202 Identities=22% Similarity=0.323 Sum_probs=157.6
Q ss_pred CCCCccCCHHHHHHHHHHH-------------hcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEec
Q 005511 40 KLDPVVGRQPQIERVVQIL-------------GRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM 106 (693)
Q Consensus 40 ~~~~iiG~~~~~~~l~~~l-------------~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 106 (693)
+..++-|.+.+++.|.+.+ ...+|.++|+|||||||||.+|++.|.+. +..++.+..
T Consensus 169 ~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT----------~aTFLKLAg 238 (424)
T KOG0652|consen 169 QYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT----------NATFLKLAG 238 (424)
T ss_pred cccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc----------cchHHHhcc
Confidence 5788999999999988853 45788999999999999999999999886 444555555
Q ss_pred cccccCCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCC---CCCChHhHHHHHhhhhc-------CCCcEEEEE
Q 005511 107 GLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAG---AAEGAIDAANILKPSLA-------RGELQCIGA 176 (693)
Q Consensus 107 ~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~---~~~~~~~~~~~L~~~l~-------~~~v~vI~~ 176 (693)
..+. ..+.|.-...++..|..++...|+|+||||+|.+...+ ...+..+++..++.++. ..++.||++
T Consensus 239 PQLV--QMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAA 316 (424)
T KOG0652|consen 239 PQLV--QMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAA 316 (424)
T ss_pred hHHH--hhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEee
Confidence 5554 45678888889999999999999999999999986543 23456667766666653 456999999
Q ss_pred echHHHHhhhhcCHHHhc--cCC-ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhh
Q 005511 177 TTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKA 253 (693)
Q Consensus 177 t~~~~~~~~~~l~~~l~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 253 (693)
||+.+ -+||++++ |++ .|+||.|+.+.|.+|++...+++....++. ++.+++-+++| +...+
T Consensus 317 TNRvD-----iLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvN-----feELaRsTddF-----NGAQc 381 (424)
T KOG0652|consen 317 TNRVD-----ILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVN-----FEELARSTDDF-----NGAQC 381 (424)
T ss_pred ccccc-----ccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCC-----HHHHhhccccc-----Cchhh
Confidence 99987 58999998 897 899999999999999998877643333332 56677766665 44777
Q ss_pred hhHHHHHhhHHHHhh
Q 005511 254 IDLIDEAGSRVRLRH 268 (693)
Q Consensus 254 ~~ll~~a~~~~~~~~ 268 (693)
...+-+|...+-.+.
T Consensus 382 KAVcVEAGMiALRr~ 396 (424)
T KOG0652|consen 382 KAVCVEAGMIALRRG 396 (424)
T ss_pred eeeehhhhHHHHhcc
Confidence 788888877654443
No 57
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.86 E-value=6.6e-21 Score=211.73 Aligned_cols=229 Identities=17% Similarity=0.268 Sum_probs=179.4
Q ss_pred HhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhh
Q 005511 374 LHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSK 453 (693)
Q Consensus 374 l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 453 (693)
.+..++|++.+++.+.+.++..... ..+|||+|++||||+++|++|+....+.+.+|+.+||+.+......+.
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~-------~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~~ 266 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARS-------NSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESE 266 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCc-------CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHHH
Confidence 3567999999999999999877421 225999999999999999999999877788999999999876655677
Q ss_pred hcCCCCC-CcCcCccchhhHHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhh
Q 005511 454 LIGSPPG-YVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSV 532 (693)
Q Consensus 454 l~g~~~~-~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~ 532 (693)
+||+..+ +.|.... -.+.+..+.+|+|||||++.+++..|..|+.+++++.+...++......++++|++|+.....
T Consensus 267 lfg~~~~~~~~~~~~--~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~ 344 (534)
T TIGR01817 267 LFGHEKGAFTGAIAQ--RKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEE 344 (534)
T ss_pred HcCCCCCccCCCCcC--CCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHH
Confidence 8887654 3332211 113344567899999999999999999999999999887655544455689999999855432
Q ss_pred hhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCc-EEEcCCCC--HHHHHHHHHHHHHHHHHHHhcCC
Q 005511 533 IEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDE-MIVFRQLT--KLEVKEIADIMLKEVFDRLKTKD 609 (693)
Q Consensus 533 i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~-~v~f~~l~--~~~~~~i~~~~l~~~~~~~~~~~ 609 (693)
.. ..+.|+++|++|++. .|.+|||. .+|+..+++.++.++..+. +
T Consensus 345 ~~-----------------------------~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~---~ 392 (534)
T TIGR01817 345 AV-----------------------------AKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNREN---G 392 (534)
T ss_pred HH-----------------------------HcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHc---C
Confidence 11 123489999999965 58899995 7899999999999877655 3
Q ss_pred CeEEeCHHHHHHHHHhccCCCCCcchHHHHHHHHHH
Q 005511 610 IELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLE 645 (693)
Q Consensus 610 ~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~ 645 (693)
..+.+++++++.|..+.|++| .|+|++++++++.
T Consensus 393 ~~~~~s~~a~~~L~~~~WPGN--vrEL~~v~~~a~~ 426 (534)
T TIGR01817 393 RPLTITPSAIRVLMSCKWPGN--VRELENCLERTAT 426 (534)
T ss_pred CCCCCCHHHHHHHHhCCCCCh--HHHHHHHHHHHHH
Confidence 335699999999999666555 9999999998775
No 58
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.86 E-value=6.7e-21 Score=185.91 Aligned_cols=206 Identities=21% Similarity=0.288 Sum_probs=159.9
Q ss_pred hhhhhhhcCCCCCccCCHHHHHH---HHHHHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEecc
Q 005511 31 NLTKLAEEGKLDPVVGRQPQIER---VVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMG 107 (693)
Q Consensus 31 ~l~~~~~~~~~~~iiG~~~~~~~---l~~~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 107 (693)
||.+++||+++++.+||+..+.+ |+.++.....++++|+||||||||+||+.++...... ...+++++
T Consensus 127 PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~-------SyrfvelS-- 197 (554)
T KOG2028|consen 127 PLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKH-------SYRFVELS-- 197 (554)
T ss_pred ChhhhcCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCC-------ceEEEEEe--
Confidence 89999999999999999998876 7778888999999999999999999999999876321 23344443
Q ss_pred ccccCCcccchHHHHHHHHHHHHHh-----CCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCCcEEEEEechHHH
Q 005511 108 LLVAGTKYRGEFEERLKKLMEEIKQ-----SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEY 182 (693)
Q Consensus 108 ~l~~~~~~~g~~~~~l~~~~~~~~~-----~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~t~~~~~ 182 (693)
....+ ...++.+|+.+++ ....||||||||++... .++.+++..|.|.+.+|++|+..+
T Consensus 198 At~a~-------t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNks--------QQD~fLP~VE~G~I~lIGATTENP- 261 (554)
T KOG2028|consen 198 ATNAK-------TNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKS--------QQDTFLPHVENGDITLIGATTENP- 261 (554)
T ss_pred ccccc-------hHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhh--------hhhcccceeccCceEEEecccCCC-
Confidence 33222 2336677776643 35679999999999654 688899999999999999998765
Q ss_pred HhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhc---------CcccChHHHHHHHHhhhhhhcccCCchhh
Q 005511 183 RKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHH---------KLRYTDEALVSAAQLSYQYISDRFLPDKA 253 (693)
Q Consensus 183 ~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~---------~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 253 (693)
.+.++.+|.+||.++.+..++.+....||.+....+.... .+.+++..++.++.+++|.. +.+
T Consensus 262 --SFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa------R~a 333 (554)
T KOG2028|consen 262 --SFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA------RAA 333 (554)
T ss_pred --ccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH------HHH
Confidence 3579999999999999999999999999998554322111 22467889999999998863 677
Q ss_pred hhHHHHHhhHHHHhhc
Q 005511 254 IDLIDEAGSRVRLRHA 269 (693)
Q Consensus 254 ~~ll~~a~~~~~~~~~ 269 (693)
.+.|+-+.+....|..
T Consensus 334 LN~Lems~~m~~tr~g 349 (554)
T KOG2028|consen 334 LNALEMSLSMFCTRSG 349 (554)
T ss_pred HHHHHHHHHHHHhhcC
Confidence 7877777554444443
No 59
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.86 E-value=1.1e-20 Score=198.74 Aligned_cols=202 Identities=21% Similarity=0.228 Sum_probs=157.6
Q ss_pred hhhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCCCC-eEEECCCCChHHHHHHHHHHHHhcCCCCCC-------------
Q 005511 30 TNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDVPDT------------- 95 (693)
Q Consensus 30 ~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~~~-vLl~Gp~GtGKT~la~~la~~l~~~~~~~~------------- 95 (693)
.+|.++|||.+|++++||+.+++.|..++......| +||+||+||||||+|+.+|+.+.+...+..
T Consensus 6 ~~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~ 85 (484)
T PRK14956 6 EVLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEIT 85 (484)
T ss_pred chhHHHhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHH
Confidence 579999999999999999999999999998877665 799999999999999999999976321100
Q ss_pred -CCCceEEEEeccccccCCcccchHHHHHHHHHHHHH----hCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC--
Q 005511 96 -IEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR-- 168 (693)
Q Consensus 96 -~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~----~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~-- 168 (693)
.....++.++...- .| ...++.+...+. .+...|+||||+|.|. .+.++.|+..++.
T Consensus 86 ~g~~~dviEIdaas~------~g--Vd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls--------~~A~NALLKtLEEPp 149 (484)
T PRK14956 86 KGISSDVLEIDAASN------RG--IENIRELRDNVKFAPMGGKYKVYIIDEVHMLT--------DQSFNALLKTLEEPP 149 (484)
T ss_pred ccCCccceeechhhc------cc--HHHHHHHHHHHHhhhhcCCCEEEEEechhhcC--------HHHHHHHHHHhhcCC
Confidence 01123444443211 11 122344433332 3456799999999994 3478899999986
Q ss_pred CCcEEEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccC
Q 005511 169 GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRF 248 (693)
Q Consensus 169 ~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 248 (693)
..+++|++|+.+. .+.+++++||+.+.|..++.++..+.++.++.. .++.++++++..+++.++|.+
T Consensus 150 ~~viFILaTte~~-----kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~----Egi~~e~eAL~~Ia~~S~Gd~---- 216 (484)
T PRK14956 150 AHIVFILATTEFH-----KIPETILSRCQDFIFKKVPLSVLQDYSEKLCKI----ENVQYDQEGLFWIAKKGDGSV---- 216 (484)
T ss_pred CceEEEeecCChh-----hccHHHHhhhheeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCChH----
Confidence 6788888888866 689999999999999999999999998888764 678899999999999998874
Q ss_pred CchhhhhHHHHHhh
Q 005511 249 LPDKAIDLIDEAGS 262 (693)
Q Consensus 249 ~~~~~~~ll~~a~~ 262 (693)
++++.+|+.+..
T Consensus 217 --RdAL~lLeq~i~ 228 (484)
T PRK14956 217 --RDMLSFMEQAIV 228 (484)
T ss_pred --HHHHHHHHHHHH
Confidence 899999988764
No 60
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.86 E-value=1.4e-20 Score=203.96 Aligned_cols=227 Identities=18% Similarity=0.240 Sum_probs=173.6
Q ss_pred hccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHH--------hcCCCcceeeecccccc
Q 005511 375 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAY--------YFGSEEAMIRLDMSEFM 446 (693)
Q Consensus 375 ~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~--------l~~~~~~~~~~~~~~~~ 446 (693)
+..++|++.+++.+.+.+...... ..++|++|++||||+++|++|+.. ..+.+.||+.+||+.+.
T Consensus 218 f~~iiG~S~~m~~~~~~i~~~A~s-------~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~ 290 (538)
T PRK15424 218 LGDLLGQSPQMEQVRQTILLYARS-------SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIA 290 (538)
T ss_pred hhheeeCCHHHHHHHHHHHHHhCC-------CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCC
Confidence 456999999999999998776422 125999999999999999999998 55678899999999998
Q ss_pred chhhhhhhcCCCCC-CcCcCccchhhHHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEe
Q 005511 447 ERHTVSKLIGSPPG-YVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMT 525 (693)
Q Consensus 447 ~~~~~~~l~g~~~~-~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~ 525 (693)
+....+.|||+..| +.|.... .-.+.+..+.+|+||||||+.+++..|..|+.+|+++.+...++......++++|++
T Consensus 291 e~lleseLFG~~~gaftga~~~-~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaa 369 (538)
T PRK15424 291 ESLLEAELFGYEEGAFTGSRRG-GRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISA 369 (538)
T ss_pred hhhHHHHhcCCccccccCcccc-ccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEEEe
Confidence 76667789997655 3443211 112345567889999999999999999999999999998876665555678999999
Q ss_pred cCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCc-EEEcCCC--CHHHHHHHHHHHHHHHH
Q 005511 526 SNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDE-MIVFRQL--TKLEVKEIADIMLKEVF 602 (693)
Q Consensus 526 tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~-~v~f~~l--~~~~~~~i~~~~l~~~~ 602 (693)
||..-.... -.+.|+++|++|++. .|.+||| ..+|+..+++.+++++.
T Consensus 370 t~~~L~~~v-----------------------------~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~ 420 (538)
T PRK15424 370 THCDLEEDV-----------------------------RQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSL 420 (538)
T ss_pred cCCCHHHHH-----------------------------hcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHH
Confidence 985543211 122388999999965 4888898 55899999999998865
Q ss_pred HHHhcCCCeEEeCHHHH-------HHHHHhccCCCCCcchHHHHHHHHHH
Q 005511 603 DRLKTKDIELQVTERFR-------ERVVEEGYNPSYGARPLRRAIMRLLE 645 (693)
Q Consensus 603 ~~~~~~~~~l~~~~~~~-------~~l~~~~~~~~~g~r~l~~~i~~~i~ 645 (693)
... +.. ++++++ +.|..+.|+ .|.|+|++++++++.
T Consensus 421 ~~~---~~~--~~~~a~~~~~~a~~~L~~y~WP--GNvREL~nvier~~i 463 (538)
T PRK15424 421 AAL---SAP--FSAALRQGLQQCETLLLHYDWP--GNVRELRNLMERLAL 463 (538)
T ss_pred HHc---CCC--CCHHHHHhhHHHHHHHHhCCCC--chHHHHHHHHHHHHH
Confidence 543 222 555554 677775555 459999999998765
No 61
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.86 E-value=2.4e-20 Score=177.30 Aligned_cols=193 Identities=24% Similarity=0.332 Sum_probs=151.4
Q ss_pred hhhhhhhhcCCCCCccCCHHHHHHHHHHHhc-----CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEE
Q 005511 30 TNLTKLAEEGKLDPVVGRQPQIERVVQILGR-----RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITL 104 (693)
Q Consensus 30 ~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~-----~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 104 (693)
.......||+.|++++||++++++|.-.+.. ...-|+||+||||.||||||+.+|+++ +..+...
T Consensus 14 ~~~e~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em----------gvn~k~t 83 (332)
T COG2255 14 MKIERSLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL----------GVNLKIT 83 (332)
T ss_pred hhhhcccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh----------cCCeEec
Confidence 3455678999999999999999998776654 334699999999999999999999999 5555544
Q ss_pred eccccccCCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC----------------
Q 005511 105 DMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR---------------- 168 (693)
Q Consensus 105 ~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~---------------- 168 (693)
+...+... ..+-.++..+..++ ||||||||++.+. +-+.|...||.
T Consensus 84 sGp~leK~--------gDlaaiLt~Le~~D--VLFIDEIHrl~~~--------vEE~LYpaMEDf~lDI~IG~gp~Arsv 145 (332)
T COG2255 84 SGPALEKP--------GDLAAILTNLEEGD--VLFIDEIHRLSPA--------VEEVLYPAMEDFRLDIIIGKGPAARSI 145 (332)
T ss_pred ccccccCh--------hhHHHHHhcCCcCC--eEEEehhhhcChh--------HHHHhhhhhhheeEEEEEccCCccceE
Confidence 44433321 22445556555555 9999999999655 67788888763
Q ss_pred ----CCcEEEEEechHHHHhhhhcCHHHhccCC-ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhh
Q 005511 169 ----GELQCIGATTLDEYRKHIEKDPALERRFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQY 243 (693)
Q Consensus 169 ----~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 243 (693)
..+.+|+||+... .+...|+.||. ...+..++.+++.+|+..-.. ..++.++++....+|+.+.|.
T Consensus 146 ~ldLppFTLIGATTr~G-----~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~----~l~i~i~~~~a~eIA~rSRGT 216 (332)
T COG2255 146 RLDLPPFTLIGATTRAG-----MLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAK----ILGIEIDEEAALEIARRSRGT 216 (332)
T ss_pred eccCCCeeEeeeccccc-----cccchhHHhcCCeeeeecCCHHHHHHHHHHHHH----HhCCCCChHHHHHHHHhccCC
Confidence 3378999999987 58899999998 779999999999999997665 356889999999999988665
Q ss_pred hcccCCchhhhhHHHHHhhHHH
Q 005511 244 ISDRFLPDKAIDLIDEAGSRVR 265 (693)
Q Consensus 244 ~~~~~~~~~~~~ll~~a~~~~~ 265 (693)
|+-|.++|+.....+.
T Consensus 217 ------PRIAnRLLrRVRDfa~ 232 (332)
T COG2255 217 ------PRIANRLLRRVRDFAQ 232 (332)
T ss_pred ------cHHHHHHHHHHHHHHH
Confidence 7889999987765543
No 62
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.86 E-value=9e-21 Score=208.27 Aligned_cols=200 Identities=26% Similarity=0.363 Sum_probs=153.1
Q ss_pred hhcCCCCCccCCHHHHHHHHHHHh------------cCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEE
Q 005511 36 AEEGKLDPVVGRQPQIERVVQILG------------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVIT 103 (693)
Q Consensus 36 ~~~~~~~~iiG~~~~~~~l~~~l~------------~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 103 (693)
....+|++++|.+++++++.+++. ...++++||+||||||||++++++|..+ +.+++.
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~----------~~~~~~ 118 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA----------GVPFFS 118 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc----------CCCeee
Confidence 334589999999999888766543 3557799999999999999999999987 677888
Q ss_pred EeccccccCCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCC---Ch---HhHHHHHhhhh----cCCCcEE
Q 005511 104 LDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAE---GA---IDAANILKPSL----ARGELQC 173 (693)
Q Consensus 104 ~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~---~~---~~~~~~L~~~l----~~~~v~v 173 (693)
++++.+. ..+.|.....++.+|..++...|+||||||+|.+...+... .. ....+.|...+ .+..++|
T Consensus 119 i~~~~~~--~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~v 196 (495)
T TIGR01241 119 ISGSDFV--EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIV 196 (495)
T ss_pred ccHHHHH--HHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEE
Confidence 8877665 33456677889999999998999999999999998654331 11 12333333333 3456899
Q ss_pred EEEechHHHHhhhhcCHHHhc--cCC-ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCc
Q 005511 174 IGATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLP 250 (693)
Q Consensus 174 I~~t~~~~~~~~~~l~~~l~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 250 (693)
|++||.++ .+|++++| ||+ .+.++.|+.++|.+|++.++.... .. ++..+..++..+.||.+
T Consensus 197 I~aTn~~~-----~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~----~~-~~~~l~~la~~t~G~sg----- 261 (495)
T TIGR01241 197 IAATNRPD-----VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKK----LA-PDVDLKAVARRTPGFSG----- 261 (495)
T ss_pred EEecCChh-----hcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCC----CC-cchhHHHHHHhCCCCCH-----
Confidence 99999987 79999998 998 899999999999999998876421 11 34456788888888754
Q ss_pred hhhhhHHHHHhh
Q 005511 251 DKAIDLIDEAGS 262 (693)
Q Consensus 251 ~~~~~ll~~a~~ 262 (693)
++...++.+|+.
T Consensus 262 adl~~l~~eA~~ 273 (495)
T TIGR01241 262 ADLANLLNEAAL 273 (495)
T ss_pred HHHHHHHHHHHH
Confidence 677777776654
No 63
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.6e-20 Score=181.80 Aligned_cols=259 Identities=28% Similarity=0.438 Sum_probs=183.2
Q ss_pred HHHHHHhccccChHHHHHHHHHHHHHHhhcCCCC------CCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeecc
Q 005511 369 KMEETLHKRVIGQDEAVKAISRAIRRARVGLKNP------NRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDM 442 (693)
Q Consensus 369 ~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~------~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~ 442 (693)
++...|.+.++||+.+++.+.-+++........+ -.|+ ++|+.||+|+|||.+||.||+.. +.||+.+..
T Consensus 8 eIV~eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PK-NILMIGpTGVGKTEIARRLAkl~---~aPFiKVEA 83 (444)
T COG1220 8 EIVSELDRYIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPK-NILMIGPTGVGKTEIARRLAKLA---GAPFIKVEA 83 (444)
T ss_pred HHHHHHHhHhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCcc-ceEEECCCCCcHHHHHHHHHHHh---CCCeEEEEe
Confidence 3556788899999999999998886543322222 2344 59999999999999999999997 899999988
Q ss_pred ccccchhhh----------------------------------------hhhcCCCCCCcCcCcc--------chhhHHH
Q 005511 443 SEFMERHTV----------------------------------------SKLIGSPPGYVGYTEG--------GQLTEAV 474 (693)
Q Consensus 443 ~~~~~~~~~----------------------------------------~~l~g~~~~~~g~~~~--------~~l~~~~ 474 (693)
+.|.+-..+ ..|+++....-|..+. ..+...+
T Consensus 84 TKfTEVGYVGrDVesivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~~~g~~~~~~~~~~~r~~~rkkL 163 (444)
T COG1220 84 TKFTEVGYVGRDVESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKNFWGQSENKQESSATREKFRKKL 163 (444)
T ss_pred eeeeecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcCcccccchHHHHHHHHHH
Confidence 776542110 1112221111111110 0000011
Q ss_pred H-------------------------------------------------------------------------------
Q 005511 475 R------------------------------------------------------------------------------- 475 (693)
Q Consensus 475 ~------------------------------------------------------------------------------- 475 (693)
+
T Consensus 164 r~GeLdd~eIeiev~~~~~~~~~i~~~pgme~~~~~l~~m~~~~~~~kkkkrk~~Vk~A~~~L~~eea~KLid~e~i~~e 243 (444)
T COG1220 164 REGELDDKEIEIEVADKGPPGFEIMGPPGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKKLLIEEEADKLIDQEEIKQE 243 (444)
T ss_pred HcCCCCccEEEEEEeccCCCccccCCCCcHHHHHHHHHHHHHHhcCCCcceeeeeHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 0
Q ss_pred ----cCCCEEEEEccCcccC------------HHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhcccc
Q 005511 476 ----RRPYTVVLFDEIEKAH------------PDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRR 539 (693)
Q Consensus 476 ----~~~~~vl~iDEid~l~------------~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~ 539 (693)
....||+||||||+.. ..+|.-||.++|+..+.--.| .+...+++||++.-+.-.
T Consensus 244 Ai~~aE~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG-~VkTdHILFIasGAFh~s-------- 314 (444)
T COG1220 244 AIDAAEQNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYG-PVKTDHILFIASGAFHVA-------- 314 (444)
T ss_pred HHHHHHhcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeecccc-ccccceEEEEecCceecC--------
Confidence 1224799999999982 248999999999866653333 566778889888653211
Q ss_pred cccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHH----HHHHHHHHHHHhcCCCeEEeC
Q 005511 540 IGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIA----DIMLKEVFDRLKTKDIELQVT 615 (693)
Q Consensus 540 ~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~----~~~l~~~~~~~~~~~~~l~~~ 615 (693)
... + +-|+|-+||...|.+.+|+.+++..|+ ...++++..-++..++.+.|+
T Consensus 315 ------KPS-----D-------------LiPELQGRfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~Ft 370 (444)
T COG1220 315 ------KPS-----D-------------LIPELQGRFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFT 370 (444)
T ss_pred ------Chh-----h-------------cChhhcCCCceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEec
Confidence 000 0 669999999999999999999999999 566888888888889999999
Q ss_pred HHHHHHHHHhccC-----CCCCcchHHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEc
Q 005511 616 ERFRERVVEEGYN-----PSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVD 668 (693)
Q Consensus 616 ~~~~~~l~~~~~~-----~~~g~r~l~~~i~~~i~~~l~~~~l~~~~~~~~~~~v~~~ 668 (693)
+++++.|++.+|. .|.|+|.|..++++++...-++ -+...|.+++|+.+
T Consensus 371 ddaI~~iAeiA~~vN~~~ENIGARRLhTvlErlLediSFe----A~d~~g~~v~Id~~ 424 (444)
T COG1220 371 DDAIKRIAEIAYQVNEKTENIGARRLHTVLERLLEDISFE----APDMSGQKVTIDAE 424 (444)
T ss_pred HHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhCcc----CCcCCCCeEEEcHH
Confidence 9999999988765 4679999999888777764443 35667888888754
No 64
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.86 E-value=1.3e-20 Score=204.69 Aligned_cols=227 Identities=17% Similarity=0.236 Sum_probs=177.0
Q ss_pred hccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhh
Q 005511 375 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 454 (693)
Q Consensus 375 ~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l 454 (693)
+..++|++.++..+.+.++..... ..++|+.|++||||+++|++|+....+.+.||+.+||+.+.+....+.|
T Consensus 211 f~~iiG~S~~m~~~~~~i~~~A~~-------~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseL 283 (526)
T TIGR02329 211 LDDLLGASAPMEQVRALVRLYARS-------DATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAEL 283 (526)
T ss_pred hhheeeCCHHHHHHHHHHHHHhCC-------CCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHh
Confidence 456899999999999998776422 1259999999999999999999988777899999999998876667789
Q ss_pred cCCCCC-CcCcCccchhhHHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhh
Q 005511 455 IGSPPG-YVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVI 533 (693)
Q Consensus 455 ~g~~~~-~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i 533 (693)
||+..| +.|.... .-.+.+..+.+|+|||||++.+++..|..|+.+|+++.+...++......++++|++||......
T Consensus 284 FG~~~gaftga~~~-~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~ 362 (526)
T TIGR02329 284 FGYEEGAFTGARRG-GRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTA 362 (526)
T ss_pred cCCccccccccccc-ccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHH
Confidence 997655 3333211 11244556788999999999999999999999999998876665555566899999998554321
Q ss_pred hhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCc-EEEcCCC--CHHHHHHHHHHHHHHHHHHHhcCCC
Q 005511 534 EKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDE-MIVFRQL--TKLEVKEIADIMLKEVFDRLKTKDI 610 (693)
Q Consensus 534 ~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~-~v~f~~l--~~~~~~~i~~~~l~~~~~~~~~~~~ 610 (693)
. -...|+++|++|++. .|.+||| ..+|+..+++.++.++.... +
T Consensus 363 v-----------------------------~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~---~- 409 (526)
T TIGR02329 363 V-----------------------------QQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAAL---R- 409 (526)
T ss_pred h-----------------------------hhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHc---C-
Confidence 1 122388999999964 5899999 55899999999999876543 2
Q ss_pred eEEeCHHHHHH-------HHHhccCCCCCcchHHHHHHHHHH
Q 005511 611 ELQVTERFRER-------VVEEGYNPSYGARPLRRAIMRLLE 645 (693)
Q Consensus 611 ~l~~~~~~~~~-------l~~~~~~~~~g~r~l~~~i~~~i~ 645 (693)
+.+++++++. |..+.|++| .|+|++++++++.
T Consensus 410 -~~~~~~a~~~~~~~~~~L~~y~WPGN--vrEL~nvier~~i 448 (526)
T TIGR02329 410 -LPDSEAAAQVLAGVADPLQRYPWPGN--VRELRNLVERLAL 448 (526)
T ss_pred -CCCCHHHHHHhHHHHHHHHhCCCCch--HHHHHHHHHHHHH
Confidence 2488898888 888555555 9999999998775
No 65
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.85 E-value=2.3e-20 Score=187.99 Aligned_cols=217 Identities=22% Similarity=0.313 Sum_probs=161.2
Q ss_pred CCCccCCHHHHHHHHHHHhc---------------CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEe
Q 005511 41 LDPVVGRQPQIERVVQILGR---------------RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLD 105 (693)
Q Consensus 41 ~~~iiG~~~~~~~l~~~l~~---------------~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 105 (693)
+++++|++++++++.++... +...|++|+||||||||++|+.+|+.+..... .....++.++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~---~~~~~~v~~~ 81 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNV---LSKGHLIEVE 81 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCc---ccCCceEEec
Confidence 67799999999987754321 23468999999999999999999998854221 1244677888
Q ss_pred ccccccCCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC--CCcEEEEEechHHHH
Q 005511 106 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--GELQCIGATTLDEYR 183 (693)
Q Consensus 106 ~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~~t~~~~~~ 183 (693)
++.+. ..+.|+....+..++..+. ++||||||+|.|...+......+.++.|...++. +.+++|+++++.++.
T Consensus 82 ~~~l~--~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~ 156 (261)
T TIGR02881 82 RADLV--GEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMD 156 (261)
T ss_pred HHHhh--hhhccchHHHHHHHHHhcc---CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhH
Confidence 87776 3456777777777776543 4699999999996433333345667778777764 456778887776666
Q ss_pred hhhhcCHHHhccCC-ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhh----cccCCchhhhhHHH
Q 005511 184 KHIEKDPALERRFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYI----SDRFLPDKAIDLID 258 (693)
Q Consensus 184 ~~~~l~~~l~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~----~~~~~~~~~~~ll~ 258 (693)
..+.++|++.+||. .+.||+++.+++.+|++.++.. .+..++++++..++....+.. ....+.+.+.++++
T Consensus 157 ~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~----~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e 232 (261)
T TIGR02881 157 YFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE----REYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIE 232 (261)
T ss_pred HHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH----cCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHH
Confidence 66778999999997 7999999999999999988864 567789999988877665442 12244577888888
Q ss_pred HHhhHHHHhhc
Q 005511 259 EAGSRVRLRHA 269 (693)
Q Consensus 259 ~a~~~~~~~~~ 269 (693)
.|..+...|..
T Consensus 233 ~a~~~~~~r~~ 243 (261)
T TIGR02881 233 KAIRRQAVRLL 243 (261)
T ss_pred HHHHHHHHHHh
Confidence 88877766543
No 66
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.85 E-value=3.5e-20 Score=203.83 Aligned_cols=230 Identities=19% Similarity=0.240 Sum_probs=178.8
Q ss_pred hccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhh
Q 005511 375 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 454 (693)
Q Consensus 375 ~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l 454 (693)
...++|++..++.+.+.+...... ..++||+|++||||+++|++|+......+.+|+.+||+.+.+....+.|
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~-------~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~l 258 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAAS-------DLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESEL 258 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCC-------CCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHh
Confidence 357899999999999999886422 1259999999999999999999998777889999999998765556678
Q ss_pred cCCCCC-CcCcCccchhhHHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhh
Q 005511 455 IGSPPG-YVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVI 533 (693)
Q Consensus 455 ~g~~~~-~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i 533 (693)
||+..+ +.|.... -.+.+..+.+|+|||||++.+++.+|..|+.+++++.+...++......++++|++||......
T Consensus 259 fG~~~g~~~ga~~~--~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~ 336 (509)
T PRK05022 259 FGHVKGAFTGAISN--RSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREE 336 (509)
T ss_pred cCccccccCCCccc--CCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHHHH
Confidence 887554 3333211 1133456778999999999999999999999999998866555545556899999998554321
Q ss_pred hhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcE-EEcCCC--CHHHHHHHHHHHHHHHHHHHhcCCC
Q 005511 534 EKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEM-IVFRQL--TKLEVKEIADIMLKEVFDRLKTKDI 610 (693)
Q Consensus 534 ~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~-v~f~~l--~~~~~~~i~~~~l~~~~~~~~~~~~ 610 (693)
. ..+.|+++|++|+..+ |.+||| ..+|+..+++.+++++..++.. .
T Consensus 337 ~-----------------------------~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~--~ 385 (509)
T PRK05022 337 V-----------------------------RAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGL--R 385 (509)
T ss_pred H-----------------------------HcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCC--C
Confidence 1 1233899999999654 888999 4589999999999987765532 2
Q ss_pred eEEeCHHHHHHHHHhccCCCCCcchHHHHHHHHHHH
Q 005511 611 ELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLED 646 (693)
Q Consensus 611 ~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~~ 646 (693)
.+.+++++++.|..+.|++| .|+|+++|++++..
T Consensus 386 ~~~~s~~a~~~L~~y~WPGN--vrEL~~~i~ra~~~ 419 (509)
T PRK05022 386 SLRLSPAAQAALLAYDWPGN--VRELEHVISRAALL 419 (509)
T ss_pred CCCCCHHHHHHHHhCCCCCc--HHHHHHHHHHHHHh
Confidence 34699999999999655555 99999999987754
No 67
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.5e-20 Score=197.78 Aligned_cols=196 Identities=25% Similarity=0.329 Sum_probs=162.7
Q ss_pred CCCCccCCHHHHHHHHHHHhc-------------CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEec
Q 005511 40 KLDPVVGRQPQIERVVQILGR-------------RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM 106 (693)
Q Consensus 40 ~~~~iiG~~~~~~~l~~~l~~-------------~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 106 (693)
.++++-|..++++-|.+.+.. +.+.+||||||||||||.||.++|... +..++.+..
T Consensus 665 ~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~----------~~~fisvKG 734 (952)
T KOG0735|consen 665 RWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS----------NLRFISVKG 734 (952)
T ss_pred CceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC----------CeeEEEecC
Confidence 578999999998888887653 234699999999999999999999987 788999998
Q ss_pred cccccCCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCC---hHhHHHHHhhhhcC----CCcEEEEEech
Q 005511 107 GLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEG---AIDAANILKPSLAR----GELQCIGATTL 179 (693)
Q Consensus 107 ~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~---~~~~~~~L~~~l~~----~~v~vI~~t~~ 179 (693)
..+. .+|.|..++.++.+|..|+.+.|||||+||+|.+.|.+.... ...+.|.|+..|+. .++.|+++|++
T Consensus 735 PElL--~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsR 812 (952)
T KOG0735|consen 735 PELL--SKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSR 812 (952)
T ss_pred HHHH--HHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCC
Confidence 8888 789999999999999999999999999999999998765432 34577777777763 35899999999
Q ss_pred HHHHhhhhcCHHHhc--cCC-ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhhhhH
Q 005511 180 DEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDL 256 (693)
Q Consensus 180 ~~~~~~~~l~~~l~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l 256 (693)
++ -+||+++| |++ .+.-|.|+..+|.+|++.+...+.. -++-.++.+|..++||.+ .+...+
T Consensus 813 pd-----liDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~-----~~~vdl~~~a~~T~g~tg-----ADlq~l 877 (952)
T KOG0735|consen 813 PD-----LIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLK-----DTDVDLECLAQKTDGFTG-----ADLQSL 877 (952)
T ss_pred cc-----ccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCC-----ccccchHHHhhhcCCCch-----hhHHHH
Confidence 98 58999999 998 8899999999999999988765321 134468899999999976 666677
Q ss_pred HHHHhh
Q 005511 257 IDEAGS 262 (693)
Q Consensus 257 l~~a~~ 262 (693)
+..|..
T Consensus 878 l~~A~l 883 (952)
T KOG0735|consen 878 LYNAQL 883 (952)
T ss_pred HHHHHH
Confidence 766543
No 68
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.85 E-value=4.7e-20 Score=202.68 Aligned_cols=231 Identities=19% Similarity=0.303 Sum_probs=177.5
Q ss_pred HhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhh
Q 005511 374 LHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSK 453 (693)
Q Consensus 374 l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 453 (693)
-++.++|.+..++.+.+.+++.... . .++||+|++||||+++|++++........||+.+||+.+.+....+.
T Consensus 202 ~f~~~ig~s~~~~~~~~~~~~~A~~-~------~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~e 274 (520)
T PRK10820 202 AFSQIVAVSPKMRQVVEQARKLAML-D------APLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESE 274 (520)
T ss_pred cccceeECCHHHHHHHHHHHHHhCC-C------CCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHH
Confidence 4568999999999998888765422 1 24999999999999999999998877778999999999876656667
Q ss_pred hcCCCCC-CcCcCccchhhHHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhh
Q 005511 454 LIGSPPG-YVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSV 532 (693)
Q Consensus 454 l~g~~~~-~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~ 532 (693)
|||+..| +.|..+.. .+.+..+.+|+|||||++.+++..|..|+++++++.+...++......++++|++|+.....
T Consensus 275 lFG~~~~~~~~~~~~~--~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~ 352 (520)
T PRK10820 275 LFGHAPGAYPNALEGK--KGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVE 352 (520)
T ss_pred hcCCCCCCcCCcccCC--CChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHH
Confidence 8887553 33432221 23455677899999999999999999999999999877655544445688999999855432
Q ss_pred hhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCc-EEEcCCC--CHHHHHHHHHHHHHHHHHHHhcCC
Q 005511 533 IEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDE-MIVFRQL--TKLEVKEIADIMLKEVFDRLKTKD 609 (693)
Q Consensus 533 i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~-~v~f~~l--~~~~~~~i~~~~l~~~~~~~~~~~ 609 (693)
+.. ...|.++|++|+.. .+.+||| ..+|+..+++.++.++..+....
T Consensus 353 l~~-----------------------------~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~- 402 (520)
T PRK10820 353 LVQ-----------------------------KGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVP- 402 (520)
T ss_pred HHH-----------------------------cCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCC-
Confidence 221 12388999999854 5888998 45789999999999877654221
Q ss_pred CeEEeCHHHHHHHHHhccCCCCCcchHHHHHHHHHHH
Q 005511 610 IELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLED 646 (693)
Q Consensus 610 ~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~~ 646 (693)
...++++++++|..+.|++| .|+|++++++++..
T Consensus 403 -~~~ls~~a~~~L~~y~WPGN--vreL~nvl~~a~~~ 436 (520)
T PRK10820 403 -RPKLAADLNTVLTRYGWPGN--VRQLKNAIYRALTQ 436 (520)
T ss_pred -CCCcCHHHHHHHhcCCCCCH--HHHHHHHHHHHHHh
Confidence 23599999999998666555 99999999988753
No 69
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.85 E-value=1.6e-19 Score=196.28 Aligned_cols=202 Identities=18% Similarity=0.212 Sum_probs=157.4
Q ss_pred hhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCCCCe-EEECCCCChHHHHHHHHHHHHhcCCCCC---C-----------
Q 005511 31 NLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNP-CLIGEPGVGKTAIAEGLAQRIASGDVPD---T----------- 95 (693)
Q Consensus 31 ~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~~~v-Ll~Gp~GtGKT~la~~la~~l~~~~~~~---~----------- 95 (693)
.|.++|||++|+++|||+.+++.|.+++......|. ||+||+||||||+++.+++.+++..... +
T Consensus 5 vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~ 84 (830)
T PRK07003 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDE 84 (830)
T ss_pred hHHHHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhc
Confidence 489999999999999999999999999998776666 8999999999999999999997632110 0
Q ss_pred CCCceEEEEeccccccCCcccchHHHHHHHHHHHHH----hCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC--C
Q 005511 96 IEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--G 169 (693)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~----~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~ 169 (693)
.....+++++...- . ....++.+++.+. .....|+||||+|.|.. ..++.|++.||. .
T Consensus 85 G~h~DviEIDAas~------r--gVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~--------~A~NALLKtLEEPP~ 148 (830)
T PRK07003 85 GRFVDYVEMDAASN------R--GVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN--------HAFNAMLKTLEEPPP 148 (830)
T ss_pred CCCceEEEeccccc------c--cHHHHHHHHHHHHhccccCCceEEEEeChhhCCH--------HHHHHHHHHHHhcCC
Confidence 01124555544321 1 1223444554442 23456999999999943 367888888885 4
Q ss_pred CcEEEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCC
Q 005511 170 ELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFL 249 (693)
Q Consensus 170 ~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 249 (693)
++.+|++||... .+.+.++|||..+.|..++.++..+.|+.++.. .++.++++.+..+++.+.|.+
T Consensus 149 ~v~FILaTtd~~-----KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~----EgI~id~eAL~lIA~~A~Gsm----- 214 (830)
T PRK07003 149 HVKFILATTDPQ-----KIPVTVLSRCLQFNLKQMPAGHIVSHLERILGE----ERIAFEPQALRLLARAAQGSM----- 214 (830)
T ss_pred CeEEEEEECChh-----hccchhhhheEEEecCCcCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH-----
Confidence 688899998876 688999999999999999999999999988764 678899999999999998875
Q ss_pred chhhhhHHHHHhhH
Q 005511 250 PDKAIDLIDEAGSR 263 (693)
Q Consensus 250 ~~~~~~ll~~a~~~ 263 (693)
++++++++.+...
T Consensus 215 -RdALsLLdQAia~ 227 (830)
T PRK07003 215 -RDALSLTDQAIAY 227 (830)
T ss_pred -HHHHHHHHHHHHh
Confidence 7889998887753
No 70
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.5e-20 Score=174.64 Aligned_cols=198 Identities=22% Similarity=0.319 Sum_probs=151.1
Q ss_pred CCCCccCCHHHHHHHHHH-------------HhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEec
Q 005511 40 KLDPVVGRQPQIERVVQI-------------LGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM 106 (693)
Q Consensus 40 ~~~~iiG~~~~~~~l~~~-------------l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 106 (693)
+..++-|.+-++..+++. ++..+|+++|+|||||||||+|++++|+.. ...++.+..
T Consensus 153 sy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t----------~a~firvvg 222 (408)
T KOG0727|consen 153 SYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT----------TAAFIRVVG 222 (408)
T ss_pred cccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc----------chheeeecc
Confidence 455778887766665554 445789999999999999999999999876 566888888
Q ss_pred cccccCCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCC---CCChHhHHHHHhhhhc-------CCCcEEEEE
Q 005511 107 GLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGA---AEGAIDAANILKPSLA-------RGELQCIGA 176 (693)
Q Consensus 107 ~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~---~~~~~~~~~~L~~~l~-------~~~v~vI~~ 176 (693)
+.+. .+|.|+-...++.+|..++...|+|+||||+|.+...+- ...+.+++.+|..++. ...+.||.+
T Consensus 223 sefv--qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvima 300 (408)
T KOG0727|consen 223 SEFV--QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMA 300 (408)
T ss_pred HHHH--HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEe
Confidence 8887 678888889999999999999999999999999975432 2335678888877774 345899999
Q ss_pred echHHHHhhhhcCHHHhc--cCC-ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhh
Q 005511 177 TTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKA 253 (693)
Q Consensus 177 t~~~~~~~~~~l~~~l~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 253 (693)
||+.+ .+||++++ |++ .|+||.|+..+++-++..+..++.....++ ++.+...- +.....+.
T Consensus 301 tnrad-----tldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vd-----le~~v~rp-----dkis~adi 365 (408)
T KOG0727|consen 301 TNRAD-----TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVD-----LEDLVARP-----DKISGADI 365 (408)
T ss_pred cCccc-----ccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccC-----HHHHhcCc-----cccchhhH
Confidence 99988 79999999 898 899999999999999998887654333332 22222211 12223455
Q ss_pred hhHHHHHhhHH
Q 005511 254 IDLIDEAGSRV 264 (693)
Q Consensus 254 ~~ll~~a~~~~ 264 (693)
-.+|.+|...+
T Consensus 366 ~aicqeagm~a 376 (408)
T KOG0727|consen 366 NAICQEAGMLA 376 (408)
T ss_pred HHHHHHHhHHH
Confidence 56777776654
No 71
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.85 E-value=7.9e-21 Score=189.59 Aligned_cols=189 Identities=23% Similarity=0.366 Sum_probs=135.8
Q ss_pred HHHHhccccChHHHH---HHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccc
Q 005511 371 EETLHKRVIGQDEAV---KAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFME 447 (693)
Q Consensus 371 ~~~l~~~v~g~~~~~---~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~ 447 (693)
+..-..+++||+..+ .-|.+++.... .++++||||||||||++|++||... +.+|..++...
T Consensus 19 RP~~lde~vGQ~HLlg~~~~lrr~v~~~~---------l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~~~sAv~--- 83 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEGKPLRRAVEAGH---------LHSMILWGPPGTGKTTLARLIAGTT---NAAFEALSAVT--- 83 (436)
T ss_pred CCCCHHHhcChHhhhCCCchHHHHHhcCC---------CceeEEECCCCCCHHHHHHHHHHhh---CCceEEecccc---
Confidence 334456788998887 34555554332 2479999999999999999999997 77787766532
Q ss_pred hhhhhhhcCCCCCCcCcCccchhhHHHHc----CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEE
Q 005511 448 RHTVSKLIGSPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLI 523 (693)
Q Consensus 448 ~~~~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI 523 (693)
.|..+.+.+++.+++ ....|||+|||++++...|+.||..||+|.+. +|
T Consensus 84 --------------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~ii-------------lI 136 (436)
T COG2256 84 --------------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTII-------------LI 136 (436)
T ss_pred --------------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeEE-------------EE
Confidence 122233444444432 23579999999999999999999999998754 77
Q ss_pred EecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHHHHHHHH
Q 005511 524 MTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFD 603 (693)
Q Consensus 524 ~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l~~~~~ 603 (693)
.+|+ ++++|. ++|+|++|+ .++.|.||+.+++.+++++.+....+
T Consensus 137 GATT---------------------ENPsF~-------------ln~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~r 181 (436)
T COG2256 137 GATT---------------------ENPSFE-------------LNPALLSRA-RVFELKPLSSEDIKKLLKRALLDEER 181 (436)
T ss_pred eccC---------------------CCCCee-------------ecHHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhc
Confidence 7775 223333 789999999 99999999999999999986655444
Q ss_pred HHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHH
Q 005511 604 RLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIM 641 (693)
Q Consensus 604 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~ 641 (693)
.+. +..+.++++++++|+.. ..+. +|..-+.++
T Consensus 182 gl~--~~~~~i~~~a~~~l~~~-s~GD--~R~aLN~LE 214 (436)
T COG2256 182 GLG--GQIIVLDEEALDYLVRL-SNGD--ARRALNLLE 214 (436)
T ss_pred CCC--cccccCCHHHHHHHHHh-cCch--HHHHHHHHH
Confidence 332 34456999999999984 2222 454444444
No 72
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.1e-20 Score=192.80 Aligned_cols=202 Identities=21% Similarity=0.317 Sum_probs=155.0
Q ss_pred HHHHhccccChHHHHHHHHHHHHHH-------hhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccc
Q 005511 371 EETLHKRVIGQDEAVKAISRAIRRA-------RVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMS 443 (693)
Q Consensus 371 ~~~l~~~v~g~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~ 443 (693)
.+.-|++|.|.++++..|.+.+... ++|.+.| + ++||+||||||||+|||++|-+. +.||+....+
T Consensus 299 ~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLP---K-GVLLvGPPGTGKTlLARAvAGEA---~VPFF~~sGS 371 (752)
T KOG0734|consen 299 KNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLP---K-GVLLVGPPGTGKTLLARAVAGEA---GVPFFYASGS 371 (752)
T ss_pred cccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCC---C-ceEEeCCCCCchhHHHHHhhccc---CCCeEecccc
Confidence 3445788999999988777766543 3444443 4 49999999999999999999886 8999999999
Q ss_pred cccchhhhhhhcCCCCCCcCcCcc--chhhHHHHcCCCEEEEEccCcccC-----------HHHHHHHHHHhhcceeeCC
Q 005511 444 EFMERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKAH-----------PDVFNMMLQILEDGRLTDS 510 (693)
Q Consensus 444 ~~~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~l~-----------~~~~~~Ll~~le~~~~~~~ 510 (693)
++-+. |||...+ +.||.++++..+|||||||+|... ...+|+||..|++..
T Consensus 372 EFdEm------------~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~---- 435 (752)
T KOG0734|consen 372 EFDEM------------FVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFK---- 435 (752)
T ss_pred chhhh------------hhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcC----
Confidence 88754 6676554 889999999999999999999882 247899999998754
Q ss_pred CCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHh--hccCcEEEcCCCCHH
Q 005511 511 KGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFL--NRLDEMIVFRQLTKL 588 (693)
Q Consensus 511 ~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~--~R~~~~v~f~~l~~~ 588 (693)
....++||.+||.+.. ++++|. +|||..|..+.++-.
T Consensus 436 -----qNeGiIvigATNfpe~------------------------------------LD~AL~RPGRFD~~v~Vp~PDv~ 474 (752)
T KOG0734|consen 436 -----QNEGIIVIGATNFPEA------------------------------------LDKALTRPGRFDRHVTVPLPDVR 474 (752)
T ss_pred -----cCCceEEEeccCChhh------------------------------------hhHHhcCCCccceeEecCCCCcc
Confidence 2236789999997765 788888 799999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHHHHHHHH
Q 005511 589 EVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSM 648 (693)
Q Consensus 589 ~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~~~l 648 (693)
-..+|++.++..+ .+++++--.++..+.++ +...+|.+.|+++...+.
T Consensus 475 GR~eIL~~yl~ki-----------~~~~~VD~~iiARGT~G-FsGAdLaNlVNqAAlkAa 522 (752)
T KOG0734|consen 475 GRTEILKLYLSKI-----------PLDEDVDPKIIARGTPG-FSGADLANLVNQAALKAA 522 (752)
T ss_pred cHHHHHHHHHhcC-----------CcccCCCHhHhccCCCC-CchHHHHHHHHHHHHHHH
Confidence 9999999888742 23444433344455555 444579998887755443
No 73
>CHL00176 ftsH cell division protein; Validated
Probab=99.84 E-value=1e-19 Score=201.54 Aligned_cols=198 Identities=23% Similarity=0.318 Sum_probs=150.4
Q ss_pred CCCCCccCCHHHHHHHHHHH------------hcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEec
Q 005511 39 GKLDPVVGRQPQIERVVQIL------------GRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM 106 (693)
Q Consensus 39 ~~~~~iiG~~~~~~~l~~~l------------~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 106 (693)
.+|++++|.++.++.+.+++ ....+.++||+||||||||++|+++|..+ +.+++.+++
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~----------~~p~i~is~ 249 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----------EVPFFSISG 249 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeeeccH
Confidence 47999999999988877654 22446789999999999999999999987 778888888
Q ss_pred cccccCCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCC---CChHh---HHHHHhhhh----cCCCcEEEEE
Q 005511 107 GLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAA---EGAID---AANILKPSL----ARGELQCIGA 176 (693)
Q Consensus 107 ~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~---~~~~~---~~~~L~~~l----~~~~v~vI~~ 176 (693)
+.+. ..+.|.....++.+|..+....|+||||||+|.+...+.. ..... ..+.|+..+ .+.+++||++
T Consensus 250 s~f~--~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaa 327 (638)
T CHL00176 250 SEFV--EMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAA 327 (638)
T ss_pred HHHH--HHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEe
Confidence 7765 2334555677889999999999999999999999754322 12222 233333333 3456899999
Q ss_pred echHHHHhhhhcCHHHhc--cCC-ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhh
Q 005511 177 TTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKA 253 (693)
Q Consensus 177 t~~~~~~~~~~l~~~l~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 253 (693)
||.++ .+|+++++ ||+ .+.|+.|+.++|.+||+.+++.. ...++..+..++..+.||.+ ++.
T Consensus 328 TN~~~-----~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~-----~~~~d~~l~~lA~~t~G~sg-----aDL 392 (638)
T CHL00176 328 TNRVD-----ILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNK-----KLSPDVSLELIARRTPGFSG-----ADL 392 (638)
T ss_pred cCchH-----hhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhc-----ccchhHHHHHHHhcCCCCCH-----HHH
Confidence 99987 68999998 897 89999999999999999887641 12235567778888777644 677
Q ss_pred hhHHHHHhhH
Q 005511 254 IDLIDEAGSR 263 (693)
Q Consensus 254 ~~ll~~a~~~ 263 (693)
..++.+|+..
T Consensus 393 ~~lvneAal~ 402 (638)
T CHL00176 393 ANLLNEAAIL 402 (638)
T ss_pred HHHHHHHHHH
Confidence 7777776544
No 74
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=3.8e-20 Score=201.35 Aligned_cols=200 Identities=25% Similarity=0.350 Sum_probs=158.1
Q ss_pred CCCCCccCCHHHHHHHHHHH------------hcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEec
Q 005511 39 GKLDPVVGRQPQIERVVQIL------------GRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM 106 (693)
Q Consensus 39 ~~~~~iiG~~~~~~~l~~~l------------~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 106 (693)
-+|+++.|.++.+..|.+++ ....|+++||+||||||||.||+++|.+. +.+++.++.
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA----------gVPF~svSG 377 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSVSG 377 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc----------CCceeeech
Confidence 47999999999998877754 23668999999999999999999999987 899999999
Q ss_pred cccccCCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCC----CChH---hHHHHHhhhhc----CCCcEEEE
Q 005511 107 GLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAA----EGAI---DAANILKPSLA----RGELQCIG 175 (693)
Q Consensus 107 ~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~----~~~~---~~~~~L~~~l~----~~~v~vI~ 175 (693)
+.+.. .+.|.-..+++.+|..++...|||+||||+|.+...+.. .++. ..++.|+..++ ...+++++
T Consensus 378 SEFvE--~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a 455 (774)
T KOG0731|consen 378 SEFVE--MFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLA 455 (774)
T ss_pred HHHHH--HhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEe
Confidence 99874 344555788999999999999999999999999765521 2222 34455554444 45699999
Q ss_pred EechHHHHhhhhcCHHHhc--cCC-ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchh
Q 005511 176 ATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDK 252 (693)
Q Consensus 176 ~t~~~~~~~~~~l~~~l~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 252 (693)
+||+++ -+|++++| ||+ .|.++.|+..+|.+|++.+.+.. +...++..+..++.++.++.+ .+
T Consensus 456 ~tnr~d-----~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~----~~~~e~~dl~~~a~~t~gf~g-----ad 521 (774)
T KOG0731|consen 456 ATNRPD-----ILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKK----KLDDEDVDLSKLASLTPGFSG-----AD 521 (774)
T ss_pred ccCCcc-----ccCHHhcCCCccccceeccCCchhhhHHHHHHHhhcc----CCCcchhhHHHHHhcCCCCcH-----HH
Confidence 999998 68999999 998 89999999999999999887653 222344455567887777755 67
Q ss_pred hhhHHHHHhhHH
Q 005511 253 AIDLIDEAGSRV 264 (693)
Q Consensus 253 ~~~ll~~a~~~~ 264 (693)
..+++.+|+-.+
T Consensus 522 l~n~~neaa~~a 533 (774)
T KOG0731|consen 522 LANLCNEAALLA 533 (774)
T ss_pred HHhhhhHHHHHH
Confidence 777777776544
No 75
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.84 E-value=7.5e-20 Score=210.29 Aligned_cols=199 Identities=24% Similarity=0.333 Sum_probs=160.1
Q ss_pred CCCCccCCHHHHHHHHHHHh-------------cCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEec
Q 005511 40 KLDPVVGRQPQIERVVQILG-------------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM 106 (693)
Q Consensus 40 ~~~~iiG~~~~~~~l~~~l~-------------~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 106 (693)
+++++.|++.+++.|.+.+. ..++.++|||||||||||++|+++|+.+ +.+++.+++
T Consensus 451 ~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~----------~~~fi~v~~ 520 (733)
T TIGR01243 451 RWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES----------GANFIAVRG 520 (733)
T ss_pred chhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc----------CCCEEEEeh
Confidence 68899999999998877653 2567789999999999999999999998 678899998
Q ss_pred cccccCCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCC----hHhHHHHHhhhhc----CCCcEEEEEec
Q 005511 107 GLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEG----AIDAANILKPSLA----RGELQCIGATT 178 (693)
Q Consensus 107 ~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~----~~~~~~~L~~~l~----~~~v~vI~~t~ 178 (693)
+.+. .++.|+.+..++.+|..++...|+||||||+|.+.+.+.... ...+.+.|...++ ...++||++||
T Consensus 521 ~~l~--~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn 598 (733)
T TIGR01243 521 PEIL--SKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATN 598 (733)
T ss_pred HHHh--hcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCC
Confidence 8877 568899999999999999999999999999999987654332 1234454544443 45799999999
Q ss_pred hHHHHhhhhcCHHHhc--cCC-ccccCCCCHHHHHHHHHHHHHhHhhhcCcccC-hHHHHHHHHhhhhhhcccCCchhhh
Q 005511 179 LDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYT-DEALVSAAQLSYQYISDRFLPDKAI 254 (693)
Q Consensus 179 ~~~~~~~~~l~~~l~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~~~~ 254 (693)
.++ .+|++++| ||+ .+.+|.|+.++|.+||+...++. .++ +..+..+++.+.||.+ .+..
T Consensus 599 ~~~-----~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~------~~~~~~~l~~la~~t~g~sg-----adi~ 662 (733)
T TIGR01243 599 RPD-----ILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSM------PLAEDVDLEELAEMTEGYTG-----ADIE 662 (733)
T ss_pred Chh-----hCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCC------CCCccCCHHHHHHHcCCCCH-----HHHH
Confidence 998 69999998 998 89999999999999998766532 222 2347888999888865 6777
Q ss_pred hHHHHHhhHHHH
Q 005511 255 DLIDEAGSRVRL 266 (693)
Q Consensus 255 ~ll~~a~~~~~~ 266 (693)
.++++|+..+..
T Consensus 663 ~~~~~A~~~a~~ 674 (733)
T TIGR01243 663 AVCREAAMAALR 674 (733)
T ss_pred HHHHHHHHHHHH
Confidence 788877765543
No 76
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1e-19 Score=200.83 Aligned_cols=204 Identities=26% Similarity=0.361 Sum_probs=164.0
Q ss_pred CCCCCccCCHHHHHHHHHHHh-------------cCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEe
Q 005511 39 GKLDPVVGRQPQIERVVQILG-------------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLD 105 (693)
Q Consensus 39 ~~~~~iiG~~~~~~~l~~~l~-------------~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 105 (693)
-+++++.|.+..+..+.+.+. ..++.++||+||||||||++|+++|..+ +.+++.++
T Consensus 239 v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~----------~~~fi~v~ 308 (494)
T COG0464 239 VTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES----------RSRFISVK 308 (494)
T ss_pred cceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC----------CCeEEEee
Confidence 368889999888887766432 2556789999999999999999999987 78899999
Q ss_pred ccccccCCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCCh---HhHHHHHhhhhc----CCCcEEEEEec
Q 005511 106 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGA---IDAANILKPSLA----RGELQCIGATT 178 (693)
Q Consensus 106 ~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~---~~~~~~L~~~l~----~~~v~vI~~t~ 178 (693)
.+.+. .+|.|+++..++.+|..+++..||||||||+|.+.+.+..... ..+.+.|+..+. ...++||++||
T Consensus 309 ~~~l~--sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN 386 (494)
T COG0464 309 GSELL--SKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATN 386 (494)
T ss_pred CHHHh--ccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCC
Confidence 98776 7789999999999999999999999999999999987655432 245555555443 45588999999
Q ss_pred hHHHHhhhhcCHHHhc--cCC-ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhhhh
Q 005511 179 LDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAID 255 (693)
Q Consensus 179 ~~~~~~~~~l~~~l~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 255 (693)
.+. .+|+++++ ||+ .+.+|.|+.++|.+|++..+.+.. .....+-.+..+++.+.+|.+ .+...
T Consensus 387 ~p~-----~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~---~~~~~~~~~~~l~~~t~~~sg-----adi~~ 453 (494)
T COG0464 387 RPD-----DLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKK---PPLAEDVDLEELAEITEGYSG-----ADIAA 453 (494)
T ss_pred Ccc-----ccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccC---CcchhhhhHHHHHHHhcCCCH-----HHHHH
Confidence 998 79999999 998 899999999999999998886421 112345567788888888654 78888
Q ss_pred HHHHHhhHHHHh
Q 005511 256 LIDEAGSRVRLR 267 (693)
Q Consensus 256 ll~~a~~~~~~~ 267 (693)
++.+|...+...
T Consensus 454 i~~ea~~~~~~~ 465 (494)
T COG0464 454 LVREAALEALRE 465 (494)
T ss_pred HHHHHHHHHHHH
Confidence 888887765443
No 77
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.84 E-value=1.1e-19 Score=177.12 Aligned_cols=226 Identities=20% Similarity=0.317 Sum_probs=183.6
Q ss_pred hccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhh
Q 005511 375 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 454 (693)
Q Consensus 375 ~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l 454 (693)
|+.+++.+..++.+....++... +.. ++|+.|.+||||-.+|++.+....+...||+.+||+.+.+....+++
T Consensus 203 F~~~v~~S~~mk~~v~qA~k~Am-lDA------PLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsEl 275 (511)
T COG3283 203 FEQIVAVSPKMKHVVEQAQKLAM-LDA------PLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESEL 275 (511)
T ss_pred hHHHhhccHHHHHHHHHHHHhhc-cCC------CeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHH
Confidence 56788888888888777766532 233 39999999999999999999999899999999999999999999999
Q ss_pred cCCCCCCcCcCccchhhHHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhh
Q 005511 455 IGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIE 534 (693)
Q Consensus 455 ~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~ 534 (693)
||+.+|-.|. .+.++.+.+|.+|+|||..++|..|..||..+.+|++...++..-.+.|+++|++|...-..+.
T Consensus 276 FG~apg~~gk------~GffE~AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~lv 349 (511)
T COG3283 276 FGHAPGDEGK------KGFFEQANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVELV 349 (511)
T ss_pred hcCCCCCCCc------cchhhhccCCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccHHHHH
Confidence 9997653222 2455668889999999999999999999999999999988877777889999999974433222
Q ss_pred hcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCc-EEEcCCC--CHHHHHHHHHHHHHHHHHHHhcCCCe
Q 005511 535 KGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDE-MIVFRQL--TKLEVKEIADIMLKEVFDRLKTKDIE 611 (693)
Q Consensus 535 ~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~-~v~f~~l--~~~~~~~i~~~~l~~~~~~~~~~~~~ 611 (693)
. +..|+.+|+.|++. .+..+|+ ..+++.-+++.++.++.+++... .
T Consensus 350 ~-----------------------------~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p--~ 398 (511)
T COG3283 350 Q-----------------------------KGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVP--R 398 (511)
T ss_pred h-----------------------------cCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCC--C
Confidence 2 23388999999954 3777787 55789999999999988877422 2
Q ss_pred EEeCHHHHHHHHHhccCCCCCcchHHHHHHHHHHH
Q 005511 612 LQVTERFRERVVEEGYNPSYGARPLRRAIMRLLED 646 (693)
Q Consensus 612 l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~~ 646 (693)
.++++++..+|..+.|++| +|+|+++|.+++..
T Consensus 399 pkl~~~~~~~L~~y~WpGN--VRqL~N~iyRA~s~ 431 (511)
T COG3283 399 PKLAADLLTVLTRYAWPGN--VRQLKNAIYRALTL 431 (511)
T ss_pred CccCHHHHHHHHHcCCCcc--HHHHHHHHHHHHHH
Confidence 4699999999999666666 99999999988753
No 78
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.84 E-value=9.8e-20 Score=183.45 Aligned_cols=213 Identities=23% Similarity=0.350 Sum_probs=149.2
Q ss_pred cccChHHHHHHHHHHHHHH-------hhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcC----CCcceeeeccccc
Q 005511 377 RVIGQDEAVKAISRAIRRA-------RVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFG----SEEAMIRLDMSEF 445 (693)
Q Consensus 377 ~v~g~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~----~~~~~~~~~~~~~ 445 (693)
.++|++.+++.|.+.+.+. ..|...+ ....+++|+||||||||++|+++|+.++. ...+++.++++++
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~-~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l 85 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTS-KQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADL 85 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCC-CCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHh
Confidence 4889999998887665443 2333333 33356999999999999999999998742 2345666666554
Q ss_pred cchhhhhhhcCCCCCCcCcCccchhhHHHHcCCCEEEEEccCcccC--------HHHHHHHHHHhhcceeeCCCCCeeec
Q 005511 446 MERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAH--------PDVFNMMLQILEDGRLTDSKGRTVDF 517 (693)
Q Consensus 446 ~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~--------~~~~~~Ll~~le~~~~~~~~~~~~~~ 517 (693)
. +. |+|... ..+.+.+..+.++||||||+|.+. .+.++.|++.|+++ .
T Consensus 86 ~---------~~---~~g~~~-~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~-----------~ 141 (261)
T TIGR02881 86 V---------GE---YIGHTA-QKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDN-----------R 141 (261)
T ss_pred h---------hh---hccchH-HHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhcc-----------C
Confidence 3 22 666553 444566777778999999999975 45889999999874 2
Q ss_pred CCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHH
Q 005511 518 KNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIM 597 (693)
Q Consensus 518 ~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~ 597 (693)
.++++|++++.... +. ...++|+|.+||+..+.|++|+.+++.+|++++
T Consensus 142 ~~~~vila~~~~~~------------------~~-------------~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~ 190 (261)
T TIGR02881 142 NEFVLILAGYSDEM------------------DY-------------FLSLNPGLRSRFPISIDFPDYTVEELMEIAERM 190 (261)
T ss_pred CCEEEEecCCcchh------------------HH-------------HHhcChHHHhccceEEEECCCCHHHHHHHHHHH
Confidence 35567776542110 00 001679999999889999999999999999988
Q ss_pred HHHHHHHHhcCCCeEEeCHHHHHHHHHhc-------cCCCCCcchHHHHHHHHHHHHHHHHHHh
Q 005511 598 LKEVFDRLKTKDIELQVTERFRERVVEEG-------YNPSYGARPLRRAIMRLLEDSMAEKMLA 654 (693)
Q Consensus 598 l~~~~~~~~~~~~~l~~~~~~~~~l~~~~-------~~~~~g~r~l~~~i~~~i~~~l~~~~l~ 654 (693)
+... + ..+++++..+|.+.. -....++|.+++.++.++.+.....+-.
T Consensus 191 ~~~~-------~--~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~~~~~r~~~~ 245 (261)
T TIGR02881 191 VKER-------E--YKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIRRQAVRLLDK 245 (261)
T ss_pred HHHc-------C--CccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 7541 2 358889988886531 1223458999999998888765555444
No 79
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.84 E-value=6.2e-20 Score=197.21 Aligned_cols=202 Identities=19% Similarity=0.216 Sum_probs=157.3
Q ss_pred hhhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCCCCe-EEECCCCChHHHHHHHHHHHHhcCCC---------CC-----
Q 005511 30 TNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNP-CLIGEPGVGKTAIAEGLAQRIASGDV---------PD----- 94 (693)
Q Consensus 30 ~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~~~v-Ll~Gp~GtGKT~la~~la~~l~~~~~---------~~----- 94 (693)
..|.++|||.+|+++|||+..++.|.+++......|. ||+||+|+||||+++.+++.+.+... |.
T Consensus 4 ~vLarKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~s 83 (700)
T PRK12323 4 QVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRA 83 (700)
T ss_pred hhHHHHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHH
Confidence 4688999999999999999999999999998887776 89999999999999999999986311 00
Q ss_pred -----CCCCceEEEEeccccccCCcccchHHHHHHHHHHHHH----hCCCeEEEEeccchhhhCCCCCChHhHHHHHhhh
Q 005511 95 -----TIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPS 165 (693)
Q Consensus 95 -----~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~----~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~ 165 (693)
......+++++...- ...+.++.+++.+. .+...|+||||+|.|.. ...|.|++.
T Consensus 84 C~~I~aG~hpDviEIdAas~--------~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~--------~AaNALLKT 147 (700)
T PRK12323 84 CTEIDAGRFVDYIEMDAASN--------RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN--------HAFNAMLKT 147 (700)
T ss_pred HHHHHcCCCCcceEeccccc--------CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH--------HHHHHHHHh
Confidence 001124555554321 11233444444432 34467999999999953 378889999
Q ss_pred hcC--CCcEEEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhh
Q 005511 166 LAR--GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQY 243 (693)
Q Consensus 166 l~~--~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 243 (693)
||. .++.+|++||.+. .+.+.++|||..+.|+.++.++..+.++.++.. .++.++++++..+++.++|.
T Consensus 148 LEEPP~~v~FILaTtep~-----kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~----Egi~~d~eAL~~IA~~A~Gs 218 (700)
T PRK12323 148 LEEPPEHVKFILATTDPQ-----KIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGE----EGIAHEVNALRLLAQAAQGS 218 (700)
T ss_pred hccCCCCceEEEEeCChH-----hhhhHHHHHHHhcccCCCChHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC
Confidence 985 6688999998877 688999999999999999999999998887763 56788999999999998886
Q ss_pred hcccCCchhhhhHHHHHhh
Q 005511 244 ISDRFLPDKAIDLIDEAGS 262 (693)
Q Consensus 244 ~~~~~~~~~~~~ll~~a~~ 262 (693)
+ ++++++++.+..
T Consensus 219 ~------RdALsLLdQaia 231 (700)
T PRK12323 219 M------RDALSLTDQAIA 231 (700)
T ss_pred H------HHHHHHHHHHHH
Confidence 4 788888887654
No 80
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=5e-20 Score=189.27 Aligned_cols=202 Identities=23% Similarity=0.310 Sum_probs=166.3
Q ss_pred hhhcCCCCCccCCHHHHHHHHHHHh------------cCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEE
Q 005511 35 LAEEGKLDPVVGRQPQIERVVQILG------------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVI 102 (693)
Q Consensus 35 ~~~~~~~~~iiG~~~~~~~l~~~l~------------~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~ 102 (693)
..++-.++++.|.+...+.+.+.+- +.+.+++||.||||+|||+|++++|.+. +..++
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~----------~atff 215 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATES----------GATFF 215 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhh----------cceEe
Confidence 3344578999999888887766432 3556799999999999999999999998 88899
Q ss_pred EEeccccccCCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChH----hHHHHHhhhh-----cCCCcEE
Q 005511 103 TLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAI----DAANILKPSL-----ARGELQC 173 (693)
Q Consensus 103 ~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~----~~~~~L~~~l-----~~~~v~v 173 (693)
.++++.+. .+|.|+.+..++.+|.-++..+|.|+||||+|.++..+..+... -....|.+.. ....++|
T Consensus 216 ~iSassLt--sK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlv 293 (428)
T KOG0740|consen 216 NISASSLT--SKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLV 293 (428)
T ss_pred eccHHHhh--hhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEE
Confidence 99999988 78899999999999999999999999999999999776443221 1223333332 2457999
Q ss_pred EEEechHHHHhhhhcCHHHhccCC-ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchh
Q 005511 174 IGATTLDEYRKHIEKDPALERRFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDK 252 (693)
Q Consensus 174 I~~t~~~~~~~~~~l~~~l~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 252 (693)
|+|||.+. .+|.++++||+ ++.+|.|+.+.|..+|+.++.. ++..+.+..+..++++++||.+ .+
T Consensus 294 igaTN~P~-----e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~----~~~~l~~~d~~~l~~~Tegysg-----sd 359 (428)
T KOG0740|consen 294 IGATNRPW-----ELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKE----QPNGLSDLDISLLAKVTEGYSG-----SD 359 (428)
T ss_pred EecCCCch-----HHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHh----CCCCccHHHHHHHHHHhcCccc-----cc
Confidence 99999987 89999999998 8899999999999999999885 3567788899999999999976 66
Q ss_pred hhhHHHHHhh
Q 005511 253 AIDLIDEAGS 262 (693)
Q Consensus 253 ~~~ll~~a~~ 262 (693)
..++|.+|+.
T Consensus 360 i~~l~kea~~ 369 (428)
T KOG0740|consen 360 ITALCKEAAM 369 (428)
T ss_pred HHHHHHHhhc
Confidence 7777777764
No 81
>PLN03025 replication factor C subunit; Provisional
Probab=99.83 E-value=9.2e-20 Score=189.16 Aligned_cols=193 Identities=19% Similarity=0.222 Sum_probs=149.6
Q ss_pred hhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccc
Q 005511 31 NLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLV 110 (693)
Q Consensus 31 ~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~ 110 (693)
||.++|||.+|++++|++++++.|..++.....+|+||+||||||||++|+++|+.+.+... ...++.++.++..
T Consensus 2 ~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~-----~~~~~eln~sd~~ 76 (319)
T PLN03025 2 PWVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNY-----KEAVLELNASDDR 76 (319)
T ss_pred ChhhhcCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccC-----ccceeeecccccc
Confidence 79999999999999999999999999998888889999999999999999999999854211 2235555554321
Q ss_pred cCCcccchHHHHHHHHHHHHH-------hCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC--CCcEEEEEechHH
Q 005511 111 AGTKYRGEFEERLKKLMEEIK-------QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--GELQCIGATTLDE 181 (693)
Q Consensus 111 ~~~~~~g~~~~~l~~~~~~~~-------~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~~t~~~~ 181 (693)
. .. .++..+.... .....+++|||+|.|.. ..++.|++.++. ....+|.+||...
T Consensus 77 ~----~~----~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~--------~aq~aL~~~lE~~~~~t~~il~~n~~~ 140 (319)
T PLN03025 77 G----ID----VVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS--------GAQQALRRTMEIYSNTTRFALACNTSS 140 (319)
T ss_pred c----HH----HHHHHHHHHHhccccCCCCCeEEEEEechhhcCH--------HHHHHHHHHHhcccCCceEEEEeCCcc
Confidence 1 11 2222222211 12356999999999953 367888888874 4467788888765
Q ss_pred HHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhhhhHHHH
Q 005511 182 YRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDE 259 (693)
Q Consensus 182 ~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~ 259 (693)
.+.+++++|+..++|++|+.++....++..+++ .++.++++++..++..+.|.+ +.++..|+.
T Consensus 141 -----~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~----egi~i~~~~l~~i~~~~~gDl------R~aln~Lq~ 203 (319)
T PLN03025 141 -----KIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEA----EKVPYVPEGLEAIIFTADGDM------RQALNNLQA 203 (319)
T ss_pred -----ccchhHHHhhhcccCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH------HHHHHHHHH
Confidence 578899999999999999999999999988764 678899999999999887764 677777763
No 82
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=2.3e-20 Score=208.13 Aligned_cols=205 Identities=27% Similarity=0.357 Sum_probs=162.1
Q ss_pred CCCCccCCHHHHHHHHHHHh-------------cCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEec
Q 005511 40 KLDPVVGRQPQIERVVQILG-------------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM 106 (693)
Q Consensus 40 ~~~~iiG~~~~~~~l~~~l~-------------~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 106 (693)
.|+++-|.+.++.+|.+++- ..+++++||+||||||||..|+++|..+..+.- ...++--+.
T Consensus 263 ~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~-----kisffmrkg 337 (1080)
T KOG0732|consen 263 GFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNR-----KISFFMRKG 337 (1080)
T ss_pred CccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhccccc-----ccchhhhcC
Confidence 79999999999999888642 367899999999999999999999998854211 111121222
Q ss_pred cccccCCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCC---hHhHHHHHhhhhc----CCCcEEEEEech
Q 005511 107 GLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEG---AIDAANILKPSLA----RGELQCIGATTL 179 (693)
Q Consensus 107 ~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~---~~~~~~~L~~~l~----~~~v~vI~~t~~ 179 (693)
.+.. .+|.|+.+.+++.+|.++++.+|.|+|+||||-|.+.++... ...+...|+.+|. +++++||+|||+
T Consensus 338 aD~l--skwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnR 415 (1080)
T KOG0732|consen 338 ADCL--SKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNR 415 (1080)
T ss_pred chhh--ccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCC
Confidence 3333 678999999999999999999999999999999988764433 2345555666664 788999999999
Q ss_pred HHHHhhhhcCHHHhc--cCC-ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhhhhH
Q 005511 180 DEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDL 256 (693)
Q Consensus 180 ~~~~~~~~l~~~l~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l 256 (693)
++ .++|++++ ||+ .+.||.|+.+.|.+|+.....++. -.++...+..++..+.||.+ ++...+
T Consensus 416 pd-----a~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~----~~i~~~l~~~la~~t~gy~g-----aDlkaL 481 (1080)
T KOG0732|consen 416 PD-----AIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWE----PPISRELLLWLAEETSGYGG-----ADLKAL 481 (1080)
T ss_pred cc-----ccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCC----CCCCHHHHHHHHHhccccch-----HHHHHH
Confidence 98 79999988 998 899999999999999998776542 46778899999999999976 556667
Q ss_pred HHHHhhHHH
Q 005511 257 IDEAGSRVR 265 (693)
Q Consensus 257 l~~a~~~~~ 265 (693)
+.+|+-.+.
T Consensus 482 CTeAal~~~ 490 (1080)
T KOG0732|consen 482 CTEAALIAL 490 (1080)
T ss_pred HHHHhhhhh
Confidence 766655443
No 83
>CHL00181 cbbX CbbX; Provisional
Probab=99.83 E-value=4.1e-19 Score=179.58 Aligned_cols=215 Identities=24% Similarity=0.271 Sum_probs=154.9
Q ss_pred CccCCHHHHHHHHHHHh---------------cCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEecc
Q 005511 43 PVVGRQPQIERVVQILG---------------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMG 107 (693)
Q Consensus 43 ~iiG~~~~~~~l~~~l~---------------~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 107 (693)
+++|.+++++++.++.. ..++.|++|+||||||||++|+++|+.+....+. ...+++.++.+
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~---~~~~~~~v~~~ 100 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYI---KKGHLLTVTRD 100 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCC---CCCceEEecHH
Confidence 69999999998766532 1234579999999999999999999988642221 13458888877
Q ss_pred ccccCCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCC-CCCChHhHHHHHhhhhcC--CCcEEEEEechHHHHh
Q 005511 108 LLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAG-AAEGAIDAANILKPSLAR--GELQCIGATTLDEYRK 184 (693)
Q Consensus 108 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~-~~~~~~~~~~~L~~~l~~--~~v~vI~~t~~~~~~~ 184 (693)
.+. ..+.|........++..+ .++||||||+|.+...+ ....+.+.++.|...++. ..++||++++...+..
T Consensus 101 ~l~--~~~~g~~~~~~~~~l~~a---~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~ 175 (287)
T CHL00181 101 DLV--GQYIGHTAPKTKEVLKKA---MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDK 175 (287)
T ss_pred HHH--HHHhccchHHHHHHHHHc---cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHH
Confidence 665 334555555555566553 45699999999986432 223456778888888864 4688999998877777
Q ss_pred hhhcCHHHhccCC-ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcc--cCCchhhhhHHHHHh
Q 005511 185 HIEKDPALERRFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISD--RFLPDKAIDLIDEAG 261 (693)
Q Consensus 185 ~~~l~~~l~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~~ll~~a~ 261 (693)
++..+|++.+||+ .|.|++|+.+++.+|+..++++ .+..++++....+.......... -.+.+.+.++++.+.
T Consensus 176 ~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~----~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~ 251 (287)
T CHL00181 176 FYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEE----QQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRAR 251 (287)
T ss_pred HHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHH----hcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 7788999999998 8999999999999999998875 34567777776666544332111 123467778888777
Q ss_pred hHHHHhhc
Q 005511 262 SRVRLRHA 269 (693)
Q Consensus 262 ~~~~~~~~ 269 (693)
.....|..
T Consensus 252 ~~~~~r~~ 259 (287)
T CHL00181 252 MRQANRIF 259 (287)
T ss_pred HHHHHHHH
Confidence 76665543
No 84
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.83 E-value=1.3e-19 Score=181.27 Aligned_cols=158 Identities=16% Similarity=0.152 Sum_probs=124.7
Q ss_pred hcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCcccchHHHHHHHHHHHHHh-----C
Q 005511 59 GRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQ-----S 133 (693)
Q Consensus 59 ~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~-----~ 133 (693)
..+.|..++||||||||||.+|+++|+++ +.+++.++.+.+. .++.|+.+..++.+|..|.. .
T Consensus 144 ~ik~PlgllL~GPPGcGKTllAraiA~el----------g~~~i~vsa~eL~--sk~vGEsEk~IR~~F~~A~~~a~~~~ 211 (413)
T PLN00020 144 NIKVPLILGIWGGKGQGKSFQCELVFKKM----------GIEPIVMSAGELE--SENAGEPGKLIRQRYREAADIIKKKG 211 (413)
T ss_pred CCCCCeEEEeeCCCCCCHHHHHHHHHHHc----------CCCeEEEEHHHhh--cCcCCcHHHHHHHHHHHHHHHhhccC
Confidence 35778899999999999999999999999 8889999999988 67899999999999998864 4
Q ss_pred CCeEEEEeccchhhhCCCCCC-h---HhHHHHHhhhhc----------------CCCcEEEEEechHHHHhhhhcCHHHh
Q 005511 134 DEIILFIDEVHTLIGAGAAEG-A---IDAANILKPSLA----------------RGELQCIGATTLDEYRKHIEKDPALE 193 (693)
Q Consensus 134 ~~~vL~iDEid~l~~~~~~~~-~---~~~~~~L~~~l~----------------~~~v~vI~~t~~~~~~~~~~l~~~l~ 193 (693)
.||||||||||.+++...... . +-+...|..+++ ...++||+|||.++ .++++|+
T Consensus 212 aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd-----~LDpALl 286 (413)
T PLN00020 212 KMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFS-----TLYAPLI 286 (413)
T ss_pred CCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcc-----cCCHhHc
Confidence 699999999999987654221 1 112234444332 34589999999998 7999999
Q ss_pred c--cCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhh
Q 005511 194 R--RFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLS 240 (693)
Q Consensus 194 ~--Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~ 240 (693)
| ||+.+ +..|+.++|.+||+.++++ ..++...+..++...
T Consensus 287 RpGRfDk~-i~lPd~e~R~eIL~~~~r~------~~l~~~dv~~Lv~~f 328 (413)
T PLN00020 287 RDGRMEKF-YWAPTREDRIGVVHGIFRD------DGVSREDVVKLVDTF 328 (413)
T ss_pred CCCCCCce-eCCCCHHHHHHHHHHHhcc------CCCCHHHHHHHHHcC
Confidence 9 99853 4689999999999988764 345666666555543
No 85
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.83 E-value=1.6e-19 Score=205.18 Aligned_cols=226 Identities=16% Similarity=0.243 Sum_probs=175.2
Q ss_pred hccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhh
Q 005511 375 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 454 (693)
Q Consensus 375 ~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l 454 (693)
+..++|.+.++..+.+.++..... ..++||+|++||||+++|++|+....+.+.||+.+||+.+......+.+
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~-------~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~el 396 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKS-------SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEF 396 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCc-------CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHh
Confidence 567899999999988888776422 1249999999999999999999998777889999999998765556778
Q ss_pred cCCCCCCcCcCccchhhHHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhh
Q 005511 455 IGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIE 534 (693)
Q Consensus 455 ~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~ 534 (693)
+|...+ ... ....+.+..+.+|+||||||+.+++..|..|+++++++.++..++......++++|++|+.......
T Consensus 397 fg~~~~---~~~-~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~~ 472 (638)
T PRK11388 397 LGSDRT---DSE-NGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLV 472 (638)
T ss_pred cCCCCc---Ccc-CCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHHH
Confidence 886422 111 1112334567789999999999999999999999999988765554444558899999985543221
Q ss_pred hcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcE-EEcCCCC--HHHHHHHHHHHHHHHHHHHhcCCCe
Q 005511 535 KGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEM-IVFRQLT--KLEVKEIADIMLKEVFDRLKTKDIE 611 (693)
Q Consensus 535 ~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~-v~f~~l~--~~~~~~i~~~~l~~~~~~~~~~~~~ 611 (693)
. .+.|+++|++|+... |.+|||. .+|+..+++.++.++..+. +..
T Consensus 473 ~-----------------------------~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~---~~~ 520 (638)
T PRK11388 473 E-----------------------------QNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRF---STR 520 (638)
T ss_pred h-----------------------------cCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHh---CCC
Confidence 1 133889999999554 8888984 4799999999999876554 333
Q ss_pred EEeCHHHHHHHHHhccCCCCCcchHHHHHHHHHH
Q 005511 612 LQVTERFRERVVEEGYNPSYGARPLRRAIMRLLE 645 (693)
Q Consensus 612 l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~ 645 (693)
+.+++++++.|..+.|++| .|+|++++++++.
T Consensus 521 ~~~s~~a~~~L~~y~WPGN--vreL~~~l~~~~~ 552 (638)
T PRK11388 521 LKIDDDALARLVSYRWPGN--DFELRSVIENLAL 552 (638)
T ss_pred CCcCHHHHHHHHcCCCCCh--HHHHHHHHHHHHH
Confidence 5699999999999666655 9999999997664
No 86
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.83 E-value=1.6e-19 Score=193.71 Aligned_cols=194 Identities=29% Similarity=0.371 Sum_probs=153.2
Q ss_pred hhhhhhhcCCCCCccCCHHHHHH---HHHHHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEecc
Q 005511 31 NLTKLAEEGKLDPVVGRQPQIER---VVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMG 107 (693)
Q Consensus 31 ~l~~~~~~~~~~~iiG~~~~~~~---l~~~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 107 (693)
||.+++||.+|++++|++..+.. +..++......+++|+|||||||||+|+.+++.+ +.+++.+++.
T Consensus 1 pla~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~----------~~~~~~l~a~ 70 (413)
T PRK13342 1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT----------DAPFEALSAV 70 (413)
T ss_pred ChhhhhCCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEecc
Confidence 68999999999999999999777 9999988888899999999999999999999987 5567777654
Q ss_pred ccccCCcccchHHHHHHHHHHHHH----hCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCCcEEEEEechHHHH
Q 005511 108 LLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYR 183 (693)
Q Consensus 108 ~l~~~~~~~g~~~~~l~~~~~~~~----~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~t~~~~~~ 183 (693)
... ...++.++..+. ...+.+|||||+|.+.. ..++.|+..++.+.+++|++|+....
T Consensus 71 ~~~---------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~--------~~q~~LL~~le~~~iilI~att~n~~- 132 (413)
T PRK13342 71 TSG---------VKDLREVIEEARQRRSAGRRTILFIDEIHRFNK--------AQQDALLPHVEDGTITLIGATTENPS- 132 (413)
T ss_pred ccc---------HHHHHHHHHHHHHhhhcCCceEEEEechhhhCH--------HHHHHHHHHhhcCcEEEEEeCCCChh-
Confidence 211 122334444432 33567999999999853 36788889999999999988765432
Q ss_pred hhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCc-ccChHHHHHHHHhhhhhhcccCCchhhhhHHHHHhh
Q 005511 184 KHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKL-RYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGS 262 (693)
Q Consensus 184 ~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~a~~ 262 (693)
..+++++++||..+.|++++.++...+++..+.... .++ .+++++++.+++.+.|. ++.+.++++.+..
T Consensus 133 --~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~--~~~i~i~~~al~~l~~~s~Gd------~R~aln~Le~~~~ 202 (413)
T PRK13342 133 --FEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKE--RGLVELDDEALDALARLANGD------ARRALNLLELAAL 202 (413)
T ss_pred --hhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhh--cCCCCCCHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Confidence 268999999999999999999999999998776532 234 78999999999988664 4777888877654
No 87
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=2.5e-20 Score=176.68 Aligned_cols=203 Identities=23% Similarity=0.328 Sum_probs=156.4
Q ss_pred hhhhcCCCCCccCCHHHHHHHHHHHh-------------cCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCce
Q 005511 34 KLAEEGKLDPVVGRQPQIERVVQILG-------------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKK 100 (693)
Q Consensus 34 ~~~~~~~~~~iiG~~~~~~~l~~~l~-------------~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~ 100 (693)
+++...++.++-|.++++..+.+.+. ..+|.+|+|||+||||||.||+++|++. ...
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT----------SAT 246 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT----------SAT 246 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc----------chh
Confidence 44555589999999999999888654 4778999999999999999999999876 556
Q ss_pred EEEEeccccccCCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCC---CCCChHhHHHHHhhhhc-------CCC
Q 005511 101 VITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAG---AAEGAIDAANILKPSLA-------RGE 170 (693)
Q Consensus 101 ~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~---~~~~~~~~~~~L~~~l~-------~~~ 170 (693)
++.+-.+.+. .+|.|+-...++++|..+....|+|+||||||.+...+ ++.+..+.+..++.++. +++
T Consensus 247 FlRvvGseLi--QkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgD 324 (440)
T KOG0726|consen 247 FLRVVGSELI--QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGD 324 (440)
T ss_pred hhhhhhHHHH--HHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCC
Confidence 6677777777 67788888999999999999999999999999986532 33455667766666663 678
Q ss_pred cEEEEEechHHHHhhhhcCHHHhc--cCC-ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhccc
Q 005511 171 LQCIGATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDR 247 (693)
Q Consensus 171 v~vI~~t~~~~~~~~~~l~~~l~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 247 (693)
+.||.+||..+ .+||+|.| |++ .|+||.|+...+..|+.....++.....+.+ +.+...- +.
T Consensus 325 vKvimATnrie-----~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnl-----e~li~~k-----dd 389 (440)
T KOG0726|consen 325 VKVIMATNRIE-----TLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNL-----EELIMTK-----DD 389 (440)
T ss_pred eEEEEeccccc-----ccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccH-----HHHhhcc-----cc
Confidence 99999999988 79999999 898 8999999999999999977765443333332 2222211 22
Q ss_pred CCchhhhhHHHHHhhH
Q 005511 248 FLPDKAIDLIDEAGSR 263 (693)
Q Consensus 248 ~~~~~~~~ll~~a~~~ 263 (693)
+...+...+|.+|...
T Consensus 390 lSGAdIkAictEaGll 405 (440)
T KOG0726|consen 390 LSGADIKAICTEAGLL 405 (440)
T ss_pred cccccHHHHHHHHhHH
Confidence 3335666777776654
No 88
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.82 E-value=2e-19 Score=192.47 Aligned_cols=179 Identities=21% Similarity=0.360 Sum_probs=133.5
Q ss_pred hhhhhcCCCCCccCCHHHHHHHHHHHh-------------cCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCc
Q 005511 33 TKLAEEGKLDPVVGRQPQIERVVQILG-------------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGK 99 (693)
Q Consensus 33 ~~~~~~~~~~~iiG~~~~~~~l~~~l~-------------~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~ 99 (693)
.+.....+|++|.|.+++++++...+. ..+++++|||||||||||++++++|+.+............
T Consensus 173 ~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~ 252 (512)
T TIGR03689 173 LEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKS 252 (512)
T ss_pred eecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCce
Confidence 344556689999999999999887643 3567899999999999999999999998543221110112
Q ss_pred eEEEEeccccccCCcccchHHHHHHHHHHHHHh----CCCeEEEEeccchhhhCCCCCChH----hHHHHHhhhhc----
Q 005511 100 KVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQ----SDEIILFIDEVHTLIGAGAAEGAI----DAANILKPSLA---- 167 (693)
Q Consensus 100 ~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~----~~~~vL~iDEid~l~~~~~~~~~~----~~~~~L~~~l~---- 167 (693)
.++.+..+.+. .++.|+.+..++.+|..++. +.|+||||||+|.++..+....+. ...+.|+..++
T Consensus 253 ~fl~v~~~eLl--~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~ 330 (512)
T TIGR03689 253 YFLNIKGPELL--NKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVES 330 (512)
T ss_pred eEEeccchhhc--ccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccccc
Confidence 23334444444 45788888889999988765 368999999999998765433222 23344444443
Q ss_pred CCCcEEEEEechHHHHhhhhcCHHHhc--cCC-ccccCCCCHHHHHHHHHHHHH
Q 005511 168 RGELQCIGATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRE 218 (693)
Q Consensus 168 ~~~v~vI~~t~~~~~~~~~~l~~~l~~--Rf~-~i~~~~p~~~e~~~il~~~~~ 218 (693)
.+.++||++||+++ .+||+++| ||+ .|+|+.|+.+++.+|++.++.
T Consensus 331 ~~~ViVI~ATN~~d-----~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 331 LDNVIVIGASNRED-----MIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred CCceEEEeccCChh-----hCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 35789999999988 69999998 998 899999999999999998775
No 89
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.82 E-value=2.5e-19 Score=198.74 Aligned_cols=202 Identities=20% Similarity=0.242 Sum_probs=156.3
Q ss_pred hhhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCCCCe-EEECCCCChHHHHHHHHHHHHhcCCCCC----C---------
Q 005511 30 TNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNP-CLIGEPGVGKTAIAEGLAQRIASGDVPD----T--------- 95 (693)
Q Consensus 30 ~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~~~v-Ll~Gp~GtGKT~la~~la~~l~~~~~~~----~--------- 95 (693)
.+|.++|||.+|++++|++.+++.|.+++......|. ||+||+||||||+|+.+|+.+.+..... .
T Consensus 4 ~~LaeKyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~ 83 (944)
T PRK14949 4 QVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIA 83 (944)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHh
Confidence 4789999999999999999999999999998777886 8999999999999999999997642110 0
Q ss_pred -CCCceEEEEeccccccCCcccchHHHHHHHHHHHHH----hCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC--
Q 005511 96 -IEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR-- 168 (693)
Q Consensus 96 -~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~----~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~-- 168 (693)
.....+++++... ..+ ...++.+...+. .+...|+||||+|.|. .+.++.|++.||.
T Consensus 84 ~g~~~DviEidAas------~~k--VDdIReLie~v~~~P~~gk~KViIIDEAh~LT--------~eAqNALLKtLEEPP 147 (944)
T PRK14949 84 QGRFVDLIEVDAAS------RTK--VDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS--------RSSFNALLKTLEEPP 147 (944)
T ss_pred cCCCceEEEecccc------ccC--HHHHHHHHHHHHhhhhcCCcEEEEEechHhcC--------HHHHHHHHHHHhccC
Confidence 0112233343221 011 122344443332 3445799999999994 4488999999985
Q ss_pred CCcEEEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccC
Q 005511 169 GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRF 248 (693)
Q Consensus 169 ~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 248 (693)
+.+++|++|+.+. .+.+.+++||..+.|.+++.++....|+..+.. .++.++++++..+++.+.|.+
T Consensus 148 ~~vrFILaTTe~~-----kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~----EgI~~edeAL~lIA~~S~Gd~---- 214 (944)
T PRK14949 148 EHVKFLLATTDPQ-----KLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQ----EQLPFEAEALTLLAKAANGSM---- 214 (944)
T ss_pred CCeEEEEECCCch-----hchHHHHHhheEEeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH----
Confidence 5688888888776 578999999999999999999999999887764 468899999999999998864
Q ss_pred CchhhhhHHHHHhh
Q 005511 249 LPDKAIDLIDEAGS 262 (693)
Q Consensus 249 ~~~~~~~ll~~a~~ 262 (693)
|+++.+++.+..
T Consensus 215 --R~ALnLLdQala 226 (944)
T PRK14949 215 --RDALSLTDQAIA 226 (944)
T ss_pred --HHHHHHHHHHHH
Confidence 888999887663
No 90
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.82 E-value=5e-19 Score=202.26 Aligned_cols=228 Identities=16% Similarity=0.260 Sum_probs=177.4
Q ss_pred hccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhh
Q 005511 375 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 454 (693)
Q Consensus 375 ~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l 454 (693)
+..++|++.++..+.+.+...... ..++|++|++|||||++|++|+......+.+|+.+||..+......+.+
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~-------~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~l 447 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQS-------DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDL 447 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCC-------CCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhh
Confidence 457999999999999888876422 1259999999999999999999998777889999999988755556678
Q ss_pred cCCCCC-CcCcCccchhhHHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhh
Q 005511 455 IGSPPG-YVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVI 533 (693)
Q Consensus 455 ~g~~~~-~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i 533 (693)
||+..+ +.|... .-.+.+..+.+|+|||||++.+++.+|..|+..|+++.+...++......++++|++|+......
T Consensus 448 fg~~~~~~~g~~~--~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~ 525 (686)
T PRK15429 448 FGHERGAFTGASA--QRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKM 525 (686)
T ss_pred cCccccccccccc--chhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHHH
Confidence 887554 333211 12244566778999999999999999999999999998876665555556899999998554322
Q ss_pred hhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcE-EEcCCC--CHHHHHHHHHHHHHHHHHHHhcCCC
Q 005511 534 EKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEM-IVFRQL--TKLEVKEIADIMLKEVFDRLKTKDI 610 (693)
Q Consensus 534 ~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~-v~f~~l--~~~~~~~i~~~~l~~~~~~~~~~~~ 610 (693)
. -.+.|.++|++|+... |.+||| ..+|+..+++.++.++..+. +.
T Consensus 526 ~-----------------------------~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~---~~ 573 (686)
T PRK15429 526 V-----------------------------ADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRM---GR 573 (686)
T ss_pred H-----------------------------HcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHc---CC
Confidence 1 1223889999999664 888998 55899999999998877654 33
Q ss_pred eE-EeCHHHHHHHHHhccCCCCCcchHHHHHHHHHH
Q 005511 611 EL-QVTERFRERVVEEGYNPSYGARPLRRAIMRLLE 645 (693)
Q Consensus 611 ~l-~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~ 645 (693)
.+ .+++++++.|..+.|++| .|+|+++|++++.
T Consensus 574 ~~~~~s~~al~~L~~y~WPGN--vrEL~~~i~~a~~ 607 (686)
T PRK15429 574 NIDSIPAETLRTLSNMEWPGN--VRELENVIERAVL 607 (686)
T ss_pred CCCCcCHHHHHHHHhCCCCCc--HHHHHHHHHHHHH
Confidence 33 499999999998655555 9999999998875
No 91
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.82 E-value=3.2e-19 Score=188.67 Aligned_cols=199 Identities=26% Similarity=0.380 Sum_probs=149.3
Q ss_pred cCCCCCccCCHHHHHHHHHHHhc-------------CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEE
Q 005511 38 EGKLDPVVGRQPQIERVVQILGR-------------RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITL 104 (693)
Q Consensus 38 ~~~~~~iiG~~~~~~~l~~~l~~-------------~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 104 (693)
.-+++++.|++++++++.+.+.. .++.++||+||||||||++|+++|+.+ +.+++.+
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l----------~~~~~~v 187 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET----------NATFIRV 187 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC----------CCCEEec
Confidence 34688999999999998886532 346789999999999999999999988 5556777
Q ss_pred eccccccCCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCC---ChHhHHHHHhhhh---c----CCCcEEE
Q 005511 105 DMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAE---GAIDAANILKPSL---A----RGELQCI 174 (693)
Q Consensus 105 ~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~---~~~~~~~~L~~~l---~----~~~v~vI 174 (693)
....+. ..+.|.....++.+|..+....|+||||||+|.+...+... +....+..+..++ + .+.+.||
T Consensus 188 ~~~~l~--~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI 265 (364)
T TIGR01242 188 VGSELV--RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVI 265 (364)
T ss_pred chHHHH--HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEE
Confidence 665554 34566777788889998888889999999999997543221 2233333443333 2 3578999
Q ss_pred EEechHHHHhhhhcCHHHhc--cCC-ccccCCCCHHHHHHHHHHHHHhHhhhcCcccCh-HHHHHHHHhhhhhhcccCCc
Q 005511 175 GATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTD-EALVSAAQLSYQYISDRFLP 250 (693)
Q Consensus 175 ~~t~~~~~~~~~~l~~~l~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~ 250 (693)
++||.++ .+++++++ ||+ .+.|+.|+.++|.+|++.+..... +.+ ..+..+++.+.+|.+
T Consensus 266 ~ttn~~~-----~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~------l~~~~~~~~la~~t~g~sg----- 329 (364)
T TIGR01242 266 AATNRPD-----ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMK------LAEDVDLEAIAKMTEGASG----- 329 (364)
T ss_pred EecCChh-----hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCC------CCccCCHHHHHHHcCCCCH-----
Confidence 9999887 68999987 897 899999999999999997765432 222 246778888877754
Q ss_pred hhhhhHHHHHhhHH
Q 005511 251 DKAIDLIDEAGSRV 264 (693)
Q Consensus 251 ~~~~~ll~~a~~~~ 264 (693)
++...++.+|...+
T Consensus 330 ~dl~~l~~~A~~~a 343 (364)
T TIGR01242 330 ADLKAICTEAGMFA 343 (364)
T ss_pred HHHHHHHHHHHHHH
Confidence 67777777776654
No 92
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.82 E-value=3.4e-19 Score=192.05 Aligned_cols=203 Identities=22% Similarity=0.234 Sum_probs=157.5
Q ss_pred hhhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCCCCe-EEECCCCChHHHHHHHHHHHHhcCCCCC--------------
Q 005511 30 TNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNP-CLIGEPGVGKTAIAEGLAQRIASGDVPD-------------- 94 (693)
Q Consensus 30 ~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~~~v-Ll~Gp~GtGKT~la~~la~~l~~~~~~~-------------- 94 (693)
..|.++|||.+|++++|++..++.|..++......|. ||+||+||||||+|+.+|+.+.+...+.
T Consensus 3 ~~LarKyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~ 82 (702)
T PRK14960 3 QVLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVN 82 (702)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHh
Confidence 4689999999999999999999999999988775555 8999999999999999999997632111
Q ss_pred CCCCceEEEEeccccccCCcccchHHHHHHHHHHHHH----hCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC--
Q 005511 95 TIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR-- 168 (693)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~----~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~-- 168 (693)
......++.++.+.- . ....++.++..+. .+...|++|||+|.|.. ...+.|++.++.
T Consensus 83 ~g~hpDviEIDAAs~------~--~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~--------~A~NALLKtLEEPP 146 (702)
T PRK14960 83 EGRFIDLIEIDAASR------T--KVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST--------HSFNALLKTLEEPP 146 (702)
T ss_pred cCCCCceEEeccccc------C--CHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH--------HHHHHHHHHHhcCC
Confidence 011234565654321 1 1233455554442 24457999999999953 368889999986
Q ss_pred CCcEEEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccC
Q 005511 169 GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRF 248 (693)
Q Consensus 169 ~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 248 (693)
+.+.+|++|+.+. .+.+.+++||..+.|.+++.++..+.++.++.+ .++.++++++..+++.+.|.+
T Consensus 147 ~~v~FILaTtd~~-----kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~k----EgI~id~eAL~~IA~~S~GdL---- 213 (702)
T PRK14960 147 EHVKFLFATTDPQ-----KLPITVISRCLQFTLRPLAVDEITKHLGAILEK----EQIAADQDAIWQIAESAQGSL---- 213 (702)
T ss_pred CCcEEEEEECChH-----hhhHHHHHhhheeeccCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH----
Confidence 5678888888765 567889999999999999999999999988774 678999999999999998764
Q ss_pred CchhhhhHHHHHhhH
Q 005511 249 LPDKAIDLIDEAGSR 263 (693)
Q Consensus 249 ~~~~~~~ll~~a~~~ 263 (693)
+++.++++.+++.
T Consensus 214 --RdALnLLDQaIay 226 (702)
T PRK14960 214 --RDALSLTDQAIAY 226 (702)
T ss_pred --HHHHHHHHHHHHh
Confidence 7888888877653
No 93
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.82 E-value=8.2e-19 Score=188.42 Aligned_cols=202 Identities=23% Similarity=0.275 Sum_probs=151.0
Q ss_pred hhhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCCCC-eEEECCCCChHHHHHHHHHHHHhcCCCCC--------------
Q 005511 30 TNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDVPD-------------- 94 (693)
Q Consensus 30 ~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~~~-vLl~Gp~GtGKT~la~~la~~l~~~~~~~-------------- 94 (693)
..|.+++||.+|++++||+..++.|...+.....+| +||+|||||||||+|+.+|+.+.+...+.
T Consensus 2 ~~l~~kyRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~ 81 (472)
T PRK14962 2 EALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSID 81 (472)
T ss_pred chhHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHh
Confidence 468899999999999999999999999888777655 79999999999999999999987532110
Q ss_pred CCCCceEEEEeccccccCCcccchHHHHHHHHHHHHH----hCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC--
Q 005511 95 TIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR-- 168 (693)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~----~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~-- 168 (693)
......++.++.+.- .| ...++.+...+. .+...|+||||+|.|.. ..++.|+..++.
T Consensus 82 ~g~~~dv~el~aa~~------~g--id~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~--------~a~~~LLk~LE~p~ 145 (472)
T PRK14962 82 EGTFMDVIELDAASN------RG--IDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK--------EAFNALLKTLEEPP 145 (472)
T ss_pred cCCCCccEEEeCccc------CC--HHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH--------HHHHHHHHHHHhCC
Confidence 001124555544211 11 122344444332 23456999999999943 367788888876
Q ss_pred CCcEEEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccC
Q 005511 169 GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRF 248 (693)
Q Consensus 169 ~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 248 (693)
+.+++|++|+.+. .+++++.+||..+.|++++.++...+++..+.. .++.+++++++.+++.+.|.+
T Consensus 146 ~~vv~Ilattn~~-----kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~----egi~i~~eal~~Ia~~s~Gdl---- 212 (472)
T PRK14962 146 SHVVFVLATTNLE-----KVPPTIISRCQVIEFRNISDELIIKRLQEVAEA----EGIEIDREALSFIAKRASGGL---- 212 (472)
T ss_pred CcEEEEEEeCChH-----hhhHHHhcCcEEEEECCccHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhCCCH----
Confidence 6677787777654 579999999999999999999999999887763 578899999999999887653
Q ss_pred CchhhhhHHHHHhh
Q 005511 249 LPDKAIDLIDEAGS 262 (693)
Q Consensus 249 ~~~~~~~ll~~a~~ 262 (693)
+.+++.|+.+..
T Consensus 213 --R~aln~Le~l~~ 224 (472)
T PRK14962 213 --RDALTMLEQVWK 224 (472)
T ss_pred --HHHHHHHHHHHH
Confidence 677888876554
No 94
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.82 E-value=1.5e-18 Score=180.90 Aligned_cols=191 Identities=23% Similarity=0.309 Sum_probs=141.6
Q ss_pred hhhhhhhcCCCCCccCCHHHHHHHHHHHh-----cCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEe
Q 005511 31 NLTKLAEEGKLDPVVGRQPQIERVVQILG-----RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLD 105 (693)
Q Consensus 31 ~l~~~~~~~~~~~iiG~~~~~~~l~~~l~-----~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 105 (693)
.|..++||.+|++++|+++.++.+..++. ..++++++|+||||||||++|+++|+.+ +..+...+
T Consensus 14 ~~~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l----------~~~~~~~~ 83 (328)
T PRK00080 14 EIERSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM----------GVNIRITS 83 (328)
T ss_pred hhhhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh----------CCCeEEEe
Confidence 34678999999999999999999877664 3446799999999999999999999998 44455444
Q ss_pred ccccccCCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC-----------------
Q 005511 106 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR----------------- 168 (693)
Q Consensus 106 ~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~----------------- 168 (693)
...+.. ...+..++..+ ..+.+|||||+|.+... ..+.|...++.
T Consensus 84 ~~~~~~--------~~~l~~~l~~l--~~~~vl~IDEi~~l~~~--------~~e~l~~~~e~~~~~~~l~~~~~~~~~~ 145 (328)
T PRK00080 84 GPALEK--------PGDLAAILTNL--EEGDVLFIDEIHRLSPV--------VEEILYPAMEDFRLDIMIGKGPAARSIR 145 (328)
T ss_pred cccccC--------hHHHHHHHHhc--ccCCEEEEecHhhcchH--------HHHHHHHHHHhcceeeeeccCcccccee
Confidence 332211 11233444433 34569999999998532 33334443332
Q ss_pred ---CCcEEEEEechHHHHhhhhcCHHHhccCC-ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhh
Q 005511 169 ---GELQCIGATTLDEYRKHIEKDPALERRFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYI 244 (693)
Q Consensus 169 ---~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 244 (693)
..+.+|++|+... .+++++++||. .+.|++|+.+++.+|++..... .++.++++++..+++.+.|+
T Consensus 146 ~~l~~~~li~at~~~~-----~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~----~~~~~~~~~~~~ia~~~~G~- 215 (328)
T PRK00080 146 LDLPPFTLIGATTRAG-----LLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARI----LGVEIDEEGALEIARRSRGT- 215 (328)
T ss_pred ecCCCceEEeecCCcc-----cCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHH----cCCCcCHHHHHHHHHHcCCC-
Confidence 2367888888875 57899999996 7899999999999999977764 57889999999999998876
Q ss_pred cccCCchhhhhHHHHHhhHH
Q 005511 245 SDRFLPDKAIDLIDEAGSRV 264 (693)
Q Consensus 245 ~~~~~~~~~~~ll~~a~~~~ 264 (693)
|+.+..++..+...+
T Consensus 216 -----pR~a~~~l~~~~~~a 230 (328)
T PRK00080 216 -----PRIANRLLRRVRDFA 230 (328)
T ss_pred -----chHHHHHHHHHHHHH
Confidence 477777777654433
No 95
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.82 E-value=3.1e-18 Score=194.30 Aligned_cols=202 Identities=18% Similarity=0.154 Sum_probs=154.2
Q ss_pred hhhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCCCC-eEEECCCCChHHHHHHHHHHHHhcCCCCCC-------------
Q 005511 30 TNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDVPDT------------- 95 (693)
Q Consensus 30 ~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~~~-vLl~Gp~GtGKT~la~~la~~l~~~~~~~~------------- 95 (693)
..|.++|||.+|+++|||+.+++.|..++......| +||+||+|||||++|+.+|+.+.|...+..
T Consensus 3 ~~l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~ 82 (824)
T PRK07764 3 LALYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALA 82 (824)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHH
Confidence 357899999999999999999999999999888888 589999999999999999999986322110
Q ss_pred ---CCCceEEEEeccccccCCcccchHHHHHHHHHHHH----HhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC
Q 005511 96 ---IEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEI----KQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR 168 (693)
Q Consensus 96 ---~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~----~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~ 168 (693)
..+..++.++..... ....++.+...+ ......|+||||+|.|.. ..++.|+++|+.
T Consensus 83 ~g~~~~~dv~eidaas~~--------~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~--------~a~NaLLK~LEE 146 (824)
T PRK07764 83 PGGPGSLDVTEIDAASHG--------GVDDARELRERAFFAPAESRYKIFIIDEAHMVTP--------QGFNALLKIVEE 146 (824)
T ss_pred cCCCCCCcEEEecccccC--------CHHHHHHHHHHHHhchhcCCceEEEEechhhcCH--------HHHHHHHHHHhC
Confidence 012345555432211 112233333322 234567999999999953 478999999985
Q ss_pred --CCcEEEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcc
Q 005511 169 --GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISD 246 (693)
Q Consensus 169 --~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 246 (693)
..+++|++|+..+ .+.+.|++|+..+.|..++.++..++|+.+++. .++.++++.+..+++.+.+.+
T Consensus 147 pP~~~~fIl~tt~~~-----kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~----EGv~id~eal~lLa~~sgGdl-- 215 (824)
T PRK07764 147 PPEHLKFIFATTEPD-----KVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQ----EGVPVEPGVLPLVIRAGGGSV-- 215 (824)
T ss_pred CCCCeEEEEEeCChh-----hhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH--
Confidence 6688888887765 577899999999999999999999999887764 578899999999999887754
Q ss_pred cCCchhhhhHHHHHhh
Q 005511 247 RFLPDKAIDLIDEAGS 262 (693)
Q Consensus 247 ~~~~~~~~~ll~~a~~ 262 (693)
+.++.+|+..+.
T Consensus 216 ----R~Al~eLEKLia 227 (824)
T PRK07764 216 ----RDSLSVLDQLLA 227 (824)
T ss_pred ----HHHHHHHHHHHh
Confidence 677777776553
No 96
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.82 E-value=2e-19 Score=166.65 Aligned_cols=163 Identities=22% Similarity=0.347 Sum_probs=123.6
Q ss_pred ccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCC
Q 005511 378 VIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGS 457 (693)
Q Consensus 378 v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~ 457 (693)
++|.+.+++.+.+.++..... + .++|++|++||||+.+|++|++...+.+.||+.+||+.+........|||.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~------~-~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASS------D-LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTS------T-S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhCC------C-CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhcc
Confidence 578899999999988877422 1 359999999999999999999988778899999999999877777789998
Q ss_pred CCC-CcCcCccchhhHHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhc
Q 005511 458 PPG-YVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKG 536 (693)
Q Consensus 458 ~~~-~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~ 536 (693)
..+ +.|.... -.+.+..+.+|+||||||+.|++.+|..|+++|+++.+...++......++++|++|+..-....
T Consensus 74 ~~~~~~~~~~~--~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~l~~~v-- 149 (168)
T PF00158_consen 74 EKGAFTGARSD--KKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKDLEELV-- 149 (168)
T ss_dssp CSSSSTTTSSE--BEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-HHHHH--
T ss_pred ccccccccccc--cCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcCHHHHH--
Confidence 654 3333221 23788889999999999999999999999999999999877766666679999999996543222
Q ss_pred ccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCc
Q 005511 537 GRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDE 578 (693)
Q Consensus 537 ~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~ 578 (693)
....|+++|+.|+..
T Consensus 150 ---------------------------~~g~fr~dLy~rL~~ 164 (168)
T PF00158_consen 150 ---------------------------EQGRFREDLYYRLNV 164 (168)
T ss_dssp ---------------------------HTTSS-HHHHHHHTT
T ss_pred ---------------------------HcCCChHHHHHHhce
Confidence 223499999999943
No 97
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.81 E-value=1.3e-18 Score=185.69 Aligned_cols=202 Identities=22% Similarity=0.246 Sum_probs=159.0
Q ss_pred hhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCCC-CeEEECCCCChHHHHHHHHHHHHhcCCCCC--------------C
Q 005511 31 NLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKN-NPCLIGEPGVGKTAIAEGLAQRIASGDVPD--------------T 95 (693)
Q Consensus 31 ~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~~-~vLl~Gp~GtGKT~la~~la~~l~~~~~~~--------------~ 95 (693)
+|..+|||.+|++++||+..++.|.+++.....+ ++||+||+|+||||+|+.+|+.+++...+. .
T Consensus 2 ~la~KyRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~ 81 (491)
T PRK14964 2 NLALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKN 81 (491)
T ss_pred ChhHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhc
Confidence 4789999999999999999999999988876655 689999999999999999999987643321 1
Q ss_pred CCCceEEEEeccccccCCcccchHHHHHHHHHHHHH----hCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC--C
Q 005511 96 IEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--G 169 (693)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~----~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~ 169 (693)
..+..+++++.++-. ..+.++.+++.+. .+...|++|||+|.|.. ..++.|++.++. .
T Consensus 82 ~~~~Dv~eidaas~~--------~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~--------~A~NaLLK~LEePp~ 145 (491)
T PRK14964 82 SNHPDVIEIDAASNT--------SVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN--------SAFNALLKTLEEPAP 145 (491)
T ss_pred cCCCCEEEEecccCC--------CHHHHHHHHHHHHhccccCCceEEEEeChHhCCH--------HHHHHHHHHHhCCCC
Confidence 234566777664321 1233555555553 23456999999999843 478889999985 5
Q ss_pred CcEEEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCC
Q 005511 170 ELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFL 249 (693)
Q Consensus 170 ~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 249 (693)
.+.+|++|+... .+.+.+++|+..++|..++.++....+...+.+ .++.++++++..+++.+.|.+
T Consensus 146 ~v~fIlatte~~-----Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~----Egi~i~~eAL~lIa~~s~Gsl----- 211 (491)
T PRK14964 146 HVKFILATTEVK-----KIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKK----ENIEHDEESLKLIAENSSGSM----- 211 (491)
T ss_pred CeEEEEEeCChH-----HHHHHHHHhheeeecccccHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH-----
Confidence 678888887665 578899999999999999999999999988774 678899999999999997754
Q ss_pred chhhhhHHHHHhhH
Q 005511 250 PDKAIDLIDEAGSR 263 (693)
Q Consensus 250 ~~~~~~ll~~a~~~ 263 (693)
+.+..+++.++..
T Consensus 212 -R~alslLdqli~y 224 (491)
T PRK14964 212 -RNALFLLEQAAIY 224 (491)
T ss_pred -HHHHHHHHHHHHh
Confidence 7888888887654
No 98
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.81 E-value=8.2e-19 Score=190.48 Aligned_cols=203 Identities=20% Similarity=0.219 Sum_probs=157.1
Q ss_pred hhhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCCCC-eEEECCCCChHHHHHHHHHHHHhcCCCCC--------------
Q 005511 30 TNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDVPD-------------- 94 (693)
Q Consensus 30 ~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~~~-vLl~Gp~GtGKT~la~~la~~l~~~~~~~-------------- 94 (693)
..|.++|||.+|++++|++.+++.|..++.....+| +||+||+|||||++|+.+|+.+++...+.
T Consensus 4 ~~l~~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~ 83 (509)
T PRK14958 4 QVLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREID 83 (509)
T ss_pred hhHHHHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHh
Confidence 368999999999999999999999999998877777 58999999999999999999998632211
Q ss_pred CCCCceEEEEeccccccCCcccchHHHHHHHHHHHHH----hCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC--
Q 005511 95 TIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR-- 168 (693)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~----~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~-- 168 (693)
......+++++.+.- ...+.++.++..+. .+...|++|||+|.|.. +..+.|++.++.
T Consensus 84 ~g~~~d~~eidaas~--------~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~--------~a~naLLk~LEepp 147 (509)
T PRK14958 84 EGRFPDLFEVDAASR--------TKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG--------HSFNALLKTLEEPP 147 (509)
T ss_pred cCCCceEEEEccccc--------CCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH--------HHHHHHHHHHhccC
Confidence 011234666654321 11223445554443 23456999999999953 368888899985
Q ss_pred CCcEEEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccC
Q 005511 169 GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRF 248 (693)
Q Consensus 169 ~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 248 (693)
..+.+|++|+.+. .+.+.+++||..++|..++.++....++.++++ .++.++++++..+++.+.|.
T Consensus 148 ~~~~fIlattd~~-----kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~----egi~~~~~al~~ia~~s~Gs----- 213 (509)
T PRK14958 148 SHVKFILATTDHH-----KLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKE----ENVEFENAALDLLARAANGS----- 213 (509)
T ss_pred CCeEEEEEECChH-----hchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCc-----
Confidence 4688888887765 577889999999999999999998888888774 57889999999999998765
Q ss_pred CchhhhhHHHHHhhH
Q 005511 249 LPDKAIDLIDEAGSR 263 (693)
Q Consensus 249 ~~~~~~~ll~~a~~~ 263 (693)
++++.++++.++..
T Consensus 214 -lR~al~lLdq~ia~ 227 (509)
T PRK14958 214 -VRDALSLLDQSIAY 227 (509)
T ss_pred -HHHHHHHHHHHHhc
Confidence 48899999877643
No 99
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=2.3e-19 Score=168.09 Aligned_cols=198 Identities=26% Similarity=0.355 Sum_probs=159.0
Q ss_pred CCCCccCCHHHHHHHHHHHh-------------cCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEec
Q 005511 40 KLDPVVGRQPQIERVVQILG-------------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM 106 (693)
Q Consensus 40 ~~~~iiG~~~~~~~l~~~l~-------------~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 106 (693)
+..++-|..++++.+++.+. ..+|.++|+|||||||||.+|+++|++. +..++.+-.
T Consensus 175 ty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt----------dacfirvig 244 (435)
T KOG0729|consen 175 TYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT----------DACFIRVIG 244 (435)
T ss_pred ccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc----------CceEEeehh
Confidence 67788999999999988654 4678899999999999999999999886 777888888
Q ss_pred cccccCCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCC---CChHhHHHHHhhhhc-------CCCcEEEEE
Q 005511 107 GLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAA---EGAIDAANILKPSLA-------RGELQCIGA 176 (693)
Q Consensus 107 ~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~---~~~~~~~~~L~~~l~-------~~~v~vI~~ 176 (693)
+.+. .+|.|+-...++.+|..++....||+|+||+|.+...+-+ .++.+++..++.++. ++.+.|+.+
T Consensus 245 selv--qkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlma 322 (435)
T KOG0729|consen 245 SELV--QKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMA 322 (435)
T ss_pred HHHH--HHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEee
Confidence 8887 7889999999999999999999999999999998765322 344566666665553 678999999
Q ss_pred echHHHHhhhhcCHHHhc--cCC-ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhh
Q 005511 177 TTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKA 253 (693)
Q Consensus 177 t~~~~~~~~~~l~~~l~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 253 (693)
||+++ .+||+|++ |++ .++|..|+.+.|..|++.+.+.+....++. .+.+++++....+ ...
T Consensus 323 tnrpd-----tldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir-----~ellarlcpnstg-----aei 387 (435)
T KOG0729|consen 323 TNRPD-----TLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIR-----FELLARLCPNSTG-----AEI 387 (435)
T ss_pred cCCCC-----CcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchh-----HHHHHhhCCCCcc-----hHH
Confidence 99998 79999999 898 899999999999999997766543333332 4567777765544 566
Q ss_pred hhHHHHHhhHH
Q 005511 254 IDLIDEAGSRV 264 (693)
Q Consensus 254 ~~ll~~a~~~~ 264 (693)
...+-+|...+
T Consensus 388 rsvcteagmfa 398 (435)
T KOG0729|consen 388 RSVCTEAGMFA 398 (435)
T ss_pred HHHHHHhhHHH
Confidence 67777776654
No 100
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.81 E-value=7e-19 Score=193.03 Aligned_cols=202 Identities=21% Similarity=0.228 Sum_probs=157.1
Q ss_pred hhhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCCCCe-EEECCCCChHHHHHHHHHHHHhcCCCCCC-------------
Q 005511 30 TNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNP-CLIGEPGVGKTAIAEGLAQRIASGDVPDT------------- 95 (693)
Q Consensus 30 ~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~~~v-Ll~Gp~GtGKT~la~~la~~l~~~~~~~~------------- 95 (693)
..|.++|||.+|++++||+..++.|...+......|. ||+||+||||||+|+.+|+.+.+......
T Consensus 4 ~~La~KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~ 83 (647)
T PRK07994 4 QVLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIE 83 (647)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHH
Confidence 4689999999999999999999999999998777775 89999999999999999999987421100
Q ss_pred -CCCceEEEEeccccccCCcccchHHHHHHHHHHHHH----hCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC--
Q 005511 96 -IEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR-- 168 (693)
Q Consensus 96 -~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~----~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~-- 168 (693)
.....++.++...- . ..+.++.+...+. .+...|+||||+|.|. ...++.|++.+|.
T Consensus 84 ~g~~~D~ieidaas~------~--~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls--------~~a~NALLKtLEEPp 147 (647)
T PRK07994 84 QGRFVDLIEIDAASR------T--KVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS--------RHSFNALLKTLEEPP 147 (647)
T ss_pred cCCCCCceeeccccc------C--CHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC--------HHHHHHHHHHHHcCC
Confidence 01123444543210 1 1223444444432 3456799999999995 3478999999986
Q ss_pred CCcEEEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccC
Q 005511 169 GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRF 248 (693)
Q Consensus 169 ~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 248 (693)
+.+.+|++|+.+. .+.+.++|||..+.|..++.++....|+..+.. .++.++++++..++..+.|.+
T Consensus 148 ~~v~FIL~Tt~~~-----kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~----e~i~~e~~aL~~Ia~~s~Gs~---- 214 (647)
T PRK07994 148 EHVKFLLATTDPQ-----KLPVTILSRCLQFHLKALDVEQIRQQLEHILQA----EQIPFEPRALQLLARAADGSM---- 214 (647)
T ss_pred CCeEEEEecCCcc-----ccchHHHhhheEeeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH----
Confidence 5688888888776 688999999999999999999999999887764 468889999999999998864
Q ss_pred CchhhhhHHHHHhh
Q 005511 249 LPDKAIDLIDEAGS 262 (693)
Q Consensus 249 ~~~~~~~ll~~a~~ 262 (693)
++++.+++.+..
T Consensus 215 --R~Al~lldqaia 226 (647)
T PRK07994 215 --RDALSLTDQAIA 226 (647)
T ss_pred --HHHHHHHHHHHH
Confidence 889999987654
No 101
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=6.3e-19 Score=174.04 Aligned_cols=209 Identities=20% Similarity=0.272 Sum_probs=152.3
Q ss_pred hccccChHHHHHHHHHHHHHHhh---cCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhh
Q 005511 375 HKRVIGQDEAVKAISRAIRRARV---GLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTV 451 (693)
Q Consensus 375 ~~~v~g~~~~~~~l~~~~~~~~~---~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~ 451 (693)
+.+|.|..++++.|.+++...-. ..+.-.+|-.++|++||||||||+||+++|.+. +..|+.+.-+.+.++
T Consensus 211 W~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc---~tTFFNVSsstltSK--- 284 (491)
T KOG0738|consen 211 WDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC---GTTFFNVSSSTLTSK--- 284 (491)
T ss_pred hHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh---cCeEEEechhhhhhh---
Confidence 34566667777777776644321 011224555679999999999999999999996 678888887777765
Q ss_pred hhhcCCCCCCcCcCcc--chhhHHHHcCCCEEEEEccCccc------------CHHHHHHHHHHhhcceeeCCCCCeeec
Q 005511 452 SKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKA------------HPDVFNMMLQILEDGRLTDSKGRTVDF 517 (693)
Q Consensus 452 ~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~l------------~~~~~~~Ll~~le~~~~~~~~~~~~~~ 517 (693)
|.|++|+ +.||+.++...+++|||||||.+ +..+-+.||..|++-.- +...
T Consensus 285 ---------wRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~------t~e~ 349 (491)
T KOG0738|consen 285 ---------WRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQG------TLEN 349 (491)
T ss_pred ---------hccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhcccc------cccc
Confidence 9999987 89999999999999999999998 34588999999986221 1112
Q ss_pred CC-eEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHH
Q 005511 518 KN-TLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADI 596 (693)
Q Consensus 518 ~~-~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~ 596 (693)
.+ ++++++||.+-+ ++.+|++||-..|..+.++.+....+++.
T Consensus 350 ~k~VmVLAATN~PWd------------------------------------iDEAlrRRlEKRIyIPLP~~~~R~~Li~~ 393 (491)
T KOG0738|consen 350 SKVVMVLAATNFPWD------------------------------------IDEALRRRLEKRIYIPLPDAEARSALIKI 393 (491)
T ss_pred ceeEEEEeccCCCcc------------------------------------hHHHHHHHHhhheeeeCCCHHHHHHHHHH
Confidence 23 556667786655 78999999988899999999999999887
Q ss_pred HHHHHHHHHhcCCCeEEeCHHH-HHHHHHhccCCCCCcchHHHHHHHHHHHHHHHHHH
Q 005511 597 MLKEVFDRLKTKDIELQVTERF-RERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKML 653 (693)
Q Consensus 597 ~l~~~~~~~~~~~~~l~~~~~~-~~~l~~~~~~~~~g~r~l~~~i~~~i~~~l~~~~l 653 (693)
.|... ..++++ ++.|++. ...|...++++++..+-..++-+.+.
T Consensus 394 ~l~~~-----------~~~~~~~~~~lae~--~eGySGaDI~nvCreAsm~~mRR~i~ 438 (491)
T KOG0738|consen 394 LLRSV-----------ELDDPVNLEDLAER--SEGYSGADITNVCREASMMAMRRKIA 438 (491)
T ss_pred hhccc-----------cCCCCccHHHHHHH--hcCCChHHHHHHHHHHHHHHHHHHHh
Confidence 77531 122222 3455553 23355568999999888777766554
No 102
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.80 E-value=5.8e-18 Score=171.54 Aligned_cols=214 Identities=22% Similarity=0.254 Sum_probs=152.9
Q ss_pred CccCCHHHHHHHHHHHhc---------------CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEecc
Q 005511 43 PVVGRQPQIERVVQILGR---------------RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMG 107 (693)
Q Consensus 43 ~iiG~~~~~~~l~~~l~~---------------~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 107 (693)
+++|.+++++++.++... .+..+++|+||||||||++|+++++.+...... ...+++.+++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~---~~~~~v~v~~~ 99 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYV---RKGHLVSVTRD 99 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCc---ccceEEEecHH
Confidence 589999999987664221 133589999999999999999999988642211 13468888877
Q ss_pred ccccCCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCC-CCCChHhHHHHHhhhhcC--CCcEEEEEechHHHHh
Q 005511 108 LLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAG-AAEGAIDAANILKPSLAR--GELQCIGATTLDEYRK 184 (693)
Q Consensus 108 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~-~~~~~~~~~~~L~~~l~~--~~v~vI~~t~~~~~~~ 184 (693)
.+.. .+.|.....+..++..+ .+++|||||++.+.+.+ ......+.++.|.+.++. .++++|++++...+..
T Consensus 100 ~l~~--~~~g~~~~~~~~~~~~a---~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~ 174 (284)
T TIGR02880 100 DLVG--QYIGHTAPKTKEILKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDS 174 (284)
T ss_pred HHhH--hhcccchHHHHHHHHHc---cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHH
Confidence 6653 34565555666666654 34699999999986432 223456677888888874 4688999988877767
Q ss_pred hhhcCHHHhccCC-ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhh--cccCCchhhhhHHHHHh
Q 005511 185 HIEKDPALERRFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYI--SDRFLPDKAIDLIDEAG 261 (693)
Q Consensus 185 ~~~l~~~l~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~--~~~~~~~~~~~ll~~a~ 261 (693)
++.++|++.+||. .|.||+|+.+++.+|++.++++. ...++++.+..+........ ....+.+.+.++++.+.
T Consensus 175 ~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~----~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~ 250 (284)
T TIGR02880 175 FFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQ----QYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRAR 250 (284)
T ss_pred HHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHh----ccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Confidence 7778999999997 89999999999999999988763 35677887777665433111 11223456677777776
Q ss_pred hHHHHhh
Q 005511 262 SRVRLRH 268 (693)
Q Consensus 262 ~~~~~~~ 268 (693)
.+...|.
T Consensus 251 ~~~~~r~ 257 (284)
T TIGR02880 251 LRQANRL 257 (284)
T ss_pred HHHHHHH
Confidence 6655544
No 103
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.80 E-value=3e-18 Score=187.33 Aligned_cols=201 Identities=20% Similarity=0.184 Sum_probs=154.9
Q ss_pred hhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCCCC-eEEECCCCChHHHHHHHHHHHHhcCCCCC---------------
Q 005511 31 NLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDVPD--------------- 94 (693)
Q Consensus 31 ~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~~~-vLl~Gp~GtGKT~la~~la~~l~~~~~~~--------------- 94 (693)
.|.++|||.+|++++||+.+++.|..++......| +||+||+||||||+|+.+|+.+.+...+.
T Consensus 2 al~~kyRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~ 81 (584)
T PRK14952 2 ALYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAP 81 (584)
T ss_pred cHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhc
Confidence 46799999999999999999999999999888888 48999999999999999999998632111
Q ss_pred -CCCCceEEEEeccccccCCcccchHHHHHHHHHHHHH----hCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC-
Q 005511 95 -TIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR- 168 (693)
Q Consensus 95 -~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~----~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~- 168 (693)
......++.++.+... | ...++.+...+. .+...|++|||+|.|.. ..++.|++.++.
T Consensus 82 ~~~~~~dvieidaas~~------g--vd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~--------~A~NALLK~LEEp 145 (584)
T PRK14952 82 NGPGSIDVVELDAASHG------G--VDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT--------AGFNALLKIVEEP 145 (584)
T ss_pred ccCCCceEEEecccccc------C--HHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH--------HHHHHHHHHHhcC
Confidence 0112345555543211 1 122333333332 34566999999999943 478899999986
Q ss_pred -CCcEEEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhccc
Q 005511 169 -GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDR 247 (693)
Q Consensus 169 -~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 247 (693)
..+++|++|+.+. .+.+++++|+..++|..++.++..+.+..++.+ .++.++++++..++..+.|.+
T Consensus 146 p~~~~fIL~tte~~-----kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~----egi~i~~~al~~Ia~~s~Gdl--- 213 (584)
T PRK14952 146 PEHLIFIFATTEPE-----KVLPTIRSRTHHYPFRLLPPRTMRALIARICEQ----EGVVVDDAVYPLVIRAGGGSP--- 213 (584)
T ss_pred CCCeEEEEEeCChH-----hhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH---
Confidence 5688888887775 688999999999999999999999888887764 567899999999999887753
Q ss_pred CCchhhhhHHHHHhh
Q 005511 248 FLPDKAIDLIDEAGS 262 (693)
Q Consensus 248 ~~~~~~~~ll~~a~~ 262 (693)
++++.+|+..+.
T Consensus 214 ---R~aln~Ldql~~ 225 (584)
T PRK14952 214 ---RDTLSVLDQLLA 225 (584)
T ss_pred ---HHHHHHHHHHHh
Confidence 788888887654
No 104
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.80 E-value=2.1e-18 Score=190.02 Aligned_cols=227 Identities=20% Similarity=0.265 Sum_probs=174.8
Q ss_pred cccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcC
Q 005511 377 RVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIG 456 (693)
Q Consensus 377 ~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g 456 (693)
.++|.+..+..+...+...... ..++++.|++||||+++|++++......+.+|+.+||+.+......+.++|
T Consensus 139 ~lig~s~~~~~l~~~~~~~~~~-------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg 211 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGRLSRS-------SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFG 211 (469)
T ss_pred cceecCHHHHHHHHHHHHHhcc-------CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcC
Confidence 4678888888777777654311 125999999999999999999999877789999999999876666678899
Q ss_pred CCCC-CcCcCccchhhHHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhh
Q 005511 457 SPPG-YVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEK 535 (693)
Q Consensus 457 ~~~~-~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~ 535 (693)
+..| +.|.... -.+.+..+.+|.|||||++.+++..|..|+++++++.+...++......++++|++|+.......
T Consensus 212 ~~~g~~~~~~~~--~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~- 288 (469)
T PRK10923 212 HEKGAFTGANTI--RQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRV- 288 (469)
T ss_pred CCCCCCCCCCcC--CCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHH-
Confidence 8765 4443321 12334567789999999999999999999999999998876665555568999999985443211
Q ss_pred cccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCc-EEEcCCC--CHHHHHHHHHHHHHHHHHHHhcCCCe-
Q 005511 536 GGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDE-MIVFRQL--TKLEVKEIADIMLKEVFDRLKTKDIE- 611 (693)
Q Consensus 536 ~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~-~v~f~~l--~~~~~~~i~~~~l~~~~~~~~~~~~~- 611 (693)
-...|.++|++|++. .|..||| ..+|+..+++.+++++.... +..
T Consensus 289 ----------------------------~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~---~~~~ 337 (469)
T PRK10923 289 ----------------------------QEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAAREL---GVEA 337 (469)
T ss_pred ----------------------------HcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHc---CCCC
Confidence 122388999999954 5888888 56899999999998876644 333
Q ss_pred EEeCHHHHHHHHHhccCCCCCcchHHHHHHHHHHH
Q 005511 612 LQVTERFRERVVEEGYNPSYGARPLRRAIMRLLED 646 (693)
Q Consensus 612 l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~~ 646 (693)
..+++++++.|..+.|++| .|+|+++|++++..
T Consensus 338 ~~~~~~a~~~L~~~~wpgN--v~eL~~~i~~~~~~ 370 (469)
T PRK10923 338 KLLHPETEAALTRLAWPGN--VRQLENTCRWLTVM 370 (469)
T ss_pred CCcCHHHHHHHHhCCCCCh--HHHHHHHHHHHHHh
Confidence 3589999999999666555 99999999988753
No 105
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.80 E-value=1.4e-18 Score=202.08 Aligned_cols=185 Identities=16% Similarity=0.136 Sum_probs=138.3
Q ss_pred HHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCc----------------------
Q 005511 57 ILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTK---------------------- 114 (693)
Q Consensus 57 ~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------------- 114 (693)
.++..++++|||+||||||||.||+++|... +.+++.++++.+.....
T Consensus 1624 rLGl~pPKGILLiGPPGTGKTlLAKALA~es----------~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~ 1693 (2281)
T CHL00206 1624 RLALSPSRGILVIGSIGTGRSYLVKYLATNS----------YVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDI 1693 (2281)
T ss_pred HcCCCCCCceEEECCCCCCHHHHHHHHHHhc----------CCceEEEEHHHHhhccccccccccccccccccccccccc
Confidence 3445678899999999999999999999987 78899999887764210
Q ss_pred -------------------ccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhc-------C
Q 005511 115 -------------------YRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA-------R 168 (693)
Q Consensus 115 -------------------~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~-------~ 168 (693)
..+....+++.+|+.|++..||||||||||.+....... -..+.|...|. .
T Consensus 1694 ~~~~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~---ltL~qLLneLDg~~~~~s~ 1770 (2281)
T CHL00206 1694 DRDLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNY---LSLGLLVNSLSRDCERCST 1770 (2281)
T ss_pred ccccchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccce---ehHHHHHHHhccccccCCC
Confidence 001112347889999999999999999999997652211 12444444443 2
Q ss_pred CCcEEEEEechHHHHhhhhcCHHHhc--cCC-ccccCCCCHHHHHHHHHHHHHhHhhhcCcccCh--HHHHHHHHhhhhh
Q 005511 169 GELQCIGATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTD--EALVSAAQLSYQY 243 (693)
Q Consensus 169 ~~v~vI~~t~~~~~~~~~~l~~~l~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~--~~l~~l~~~~~~~ 243 (693)
..++||||||.++ .+|||++| ||+ .|.++.|+..+|.+++..+... .++.+.+ ..++.+|+.+.||
T Consensus 1771 ~~VIVIAATNRPD-----~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~t----kg~~L~~~~vdl~~LA~~T~Gf 1841 (2281)
T CHL00206 1771 RNILVIASTHIPQ-----KVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYT----RGFHLEKKMFHTNGFGSITMGS 1841 (2281)
T ss_pred CCEEEEEeCCCcc-----cCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhh----cCCCCCcccccHHHHHHhCCCC
Confidence 3589999999998 79999999 998 8999999999999988765431 2222222 2367888989888
Q ss_pred hcccCCchhhhhHHHHHhhHHHHhh
Q 005511 244 ISDRFLPDKAIDLIDEAGSRVRLRH 268 (693)
Q Consensus 244 ~~~~~~~~~~~~ll~~a~~~~~~~~ 268 (693)
.+ ++...++.+|+..+..+.
T Consensus 1842 SG-----ADLanLvNEAaliAirq~ 1861 (2281)
T CHL00206 1842 NA-----RDLVALTNEALSISITQK 1861 (2281)
T ss_pred CH-----HHHHHHHHHHHHHHHHcC
Confidence 76 888899999987765543
No 106
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.80 E-value=4.2e-18 Score=179.43 Aligned_cols=203 Identities=22% Similarity=0.203 Sum_probs=152.0
Q ss_pred hhhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCCCCe-EEECCCCChHHHHHHHHHHHHhcCCCCCC-------------
Q 005511 30 TNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNP-CLIGEPGVGKTAIAEGLAQRIASGDVPDT------------- 95 (693)
Q Consensus 30 ~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~~~v-Ll~Gp~GtGKT~la~~la~~l~~~~~~~~------------- 95 (693)
.+|.++|||.+|++++||+..++.+...+.....+|. ||+||+|+||||+|+.+|+.+.+......
T Consensus 4 ~~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~ 83 (363)
T PRK14961 4 QILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIE 83 (363)
T ss_pred HHHHHHhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 5699999999999999999999999999988766665 89999999999999999999975221100
Q ss_pred -CCCceEEEEeccccccCCcccchHHHHHHHHHHHHHh----CCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC--
Q 005511 96 -IEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQ----SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR-- 168 (693)
Q Consensus 96 -~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~----~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~-- 168 (693)
.....++.++.+. ......++.+...+.. +...|++|||+|.+.. ..++.|++.++.
T Consensus 84 ~~~~~d~~~~~~~~--------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~--------~a~naLLk~lEe~~ 147 (363)
T PRK14961 84 KGLCLDLIEIDAAS--------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR--------HSFNALLKTLEEPP 147 (363)
T ss_pred cCCCCceEEecccc--------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH--------HHHHHHHHHHhcCC
Confidence 0011333333211 0112335555555432 2356999999999843 357778888874
Q ss_pred CCcEEEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccC
Q 005511 169 GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRF 248 (693)
Q Consensus 169 ~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 248 (693)
..+.+|++|+... .+.+++.+|+..++|++|+.++..++++..+++ .++.++++++..++..+.|.
T Consensus 148 ~~~~fIl~t~~~~-----~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~----~g~~i~~~al~~ia~~s~G~----- 213 (363)
T PRK14961 148 QHIKFILATTDVE-----KIPKTILSRCLQFKLKIISEEKIFNFLKYILIK----ESIDTDEYALKLIAYHAHGS----- 213 (363)
T ss_pred CCeEEEEEcCChH-----hhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC-----
Confidence 4567777777665 578899999999999999999999999987764 46789999999999988765
Q ss_pred CchhhhhHHHHHhhH
Q 005511 249 LPDKAIDLIDEAGSR 263 (693)
Q Consensus 249 ~~~~~~~ll~~a~~~ 263 (693)
++.+.++++.++..
T Consensus 214 -~R~al~~l~~~~~~ 227 (363)
T PRK14961 214 -MRDALNLLEHAINL 227 (363)
T ss_pred -HHHHHHHHHHHHHh
Confidence 47888888877643
No 107
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.79 E-value=3.2e-19 Score=164.10 Aligned_cols=211 Identities=17% Similarity=0.237 Sum_probs=161.7
Q ss_pred CCCccHHHHHhhhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCc
Q 005511 20 NKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGK 99 (693)
Q Consensus 20 ~~~~~l~~~~~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~ 99 (693)
++++.=..+..+|.++|||..+.+|||.++.+++|.-+......+|++|.|||||||||-+.++|+++..... ..
T Consensus 5 ~~~~~~~~~~l~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~-----ke 79 (333)
T KOG0991|consen 5 SEMSKSDKYQLPWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSY-----KE 79 (333)
T ss_pred ccCCccccccchHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhh-----hh
Confidence 4455556788889999999999999999999999999999999999999999999999999999999853211 12
Q ss_pred eEEEEeccccccCCcccchHHHHHHHHHHHH---HhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhc--CCCcEEE
Q 005511 100 KVITLDMGLLVAGTKYRGEFEERLKKLMEEI---KQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA--RGELQCI 174 (693)
Q Consensus 100 ~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~---~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~--~~~v~vI 174 (693)
-++++++++-. .......+++..-+.- ..+...|+++||+|.+... ++.+|++.++ +....+.
T Consensus 80 ~vLELNASdeR----GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~g--------AQQAlRRtMEiyS~ttRFa 147 (333)
T KOG0991|consen 80 AVLELNASDER----GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAG--------AQQALRRTMEIYSNTTRFA 147 (333)
T ss_pred HhhhccCcccc----ccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhH--------HHHHHHHHHHHHcccchhh
Confidence 35566655422 1222233333222211 1245679999999999533 7888998887 6678889
Q ss_pred EEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhhh
Q 005511 175 GATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAI 254 (693)
Q Consensus 175 ~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 254 (693)
.+||..+ .+-+.+.|||..+.+...+..+...-+....+ ..++.|+++.++++...++|.+ +.+.
T Consensus 148 laCN~s~-----KIiEPIQSRCAiLRysklsd~qiL~Rl~~v~k----~Ekv~yt~dgLeaiifta~GDM------RQal 212 (333)
T KOG0991|consen 148 LACNQSE-----KIIEPIQSRCAILRYSKLSDQQILKRLLEVAK----AEKVNYTDDGLEAIIFTAQGDM------RQAL 212 (333)
T ss_pred hhhcchh-----hhhhhHHhhhHhhhhcccCHHHHHHHHHHHHH----HhCCCCCcchHHHhhhhccchH------HHHH
Confidence 9999877 67888999999999999999887776666655 4789999999999999888875 5666
Q ss_pred hHHHHHhh
Q 005511 255 DLIDEAGS 262 (693)
Q Consensus 255 ~ll~~a~~ 262 (693)
+.|....+
T Consensus 213 NnLQst~~ 220 (333)
T KOG0991|consen 213 NNLQSTVN 220 (333)
T ss_pred HHHHHHhc
Confidence 76665544
No 108
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.79 E-value=1.8e-18 Score=194.06 Aligned_cols=201 Identities=24% Similarity=0.321 Sum_probs=152.5
Q ss_pred hhhhhhhhcCCCCCccCCHHHHH---HHHHHHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEec
Q 005511 30 TNLTKLAEEGKLDPVVGRQPQIE---RVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM 106 (693)
Q Consensus 30 ~~l~~~~~~~~~~~iiG~~~~~~---~l~~~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 106 (693)
.||.+++||.+|++++|++..+. .+..++......+++|+|||||||||+|+++++.+ +.+++.+++
T Consensus 16 ~PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~----------~~~f~~lna 85 (725)
T PRK13341 16 APLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT----------RAHFSSLNA 85 (725)
T ss_pred CChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh----------cCcceeehh
Confidence 38999999999999999999885 57788888888899999999999999999999887 444556654
Q ss_pred cccccCCcccchHHHHHHHHHHHHH-hCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCCcEEEEEechHHHHhh
Q 005511 107 GLLVAGTKYRGEFEERLKKLMEEIK-QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYRKH 185 (693)
Q Consensus 107 ~~l~~~~~~~g~~~~~l~~~~~~~~-~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~t~~~~~~~~ 185 (693)
... +. ......+........ .....+|||||+|.+.. ..++.|...++.+.+++|++|+....
T Consensus 86 ~~~--~i---~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~--------~qQdaLL~~lE~g~IiLI~aTTenp~--- 149 (725)
T PRK13341 86 VLA--GV---KDLRAEVDRAKERLERHGKRTILFIDEVHRFNK--------AQQDALLPWVENGTITLIGATTENPY--- 149 (725)
T ss_pred hhh--hh---HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH--------HHHHHHHHHhcCceEEEEEecCCChH---
Confidence 321 11 111111222111111 13456999999999853 35778889999999999988876543
Q ss_pred hhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhh---hcCcccChHHHHHHHHhhhhhhcccCCchhhhhHHHHHhh
Q 005511 186 IEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEI---HHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGS 262 (693)
Q Consensus 186 ~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~---~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~a~~ 262 (693)
..+++++.+|+..+.|++++.+++..+++..+..... ..++.+++++++.+++.+.|.+ +.+.++|+.++.
T Consensus 150 ~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~------R~lln~Le~a~~ 223 (725)
T PRK13341 150 FEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDA------RSLLNALELAVE 223 (725)
T ss_pred hhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCH------HHHHHHHHHHHH
Confidence 2578999999999999999999999999988764321 3457899999999999886653 788888887764
No 109
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.79 E-value=6.3e-18 Score=184.29 Aligned_cols=203 Identities=20% Similarity=0.225 Sum_probs=155.6
Q ss_pred hhhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCCCC-eEEECCCCChHHHHHHHHHHHHhcCCCCCC-------------
Q 005511 30 TNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDVPDT------------- 95 (693)
Q Consensus 30 ~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~~~-vLl~Gp~GtGKT~la~~la~~l~~~~~~~~------------- 95 (693)
..|.++|||.+|++++|++.+++.|..++......| +||+||+|||||++|+.+++.+.+......
T Consensus 4 ~vLarKYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~ 83 (709)
T PRK08691 4 QVLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQID 83 (709)
T ss_pred hhHHHHhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHh
Confidence 458999999999999999999999999988766554 699999999999999999999876322110
Q ss_pred -CCCceEEEEeccccccCCcccchHHHHHHHHHHHHH----hCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC--
Q 005511 96 -IEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR-- 168 (693)
Q Consensus 96 -~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~----~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~-- 168 (693)
.....++.++...- . ....++.++..+. .....|+||||+|.|. ....+.|++.++.
T Consensus 84 ~g~~~DvlEidaAs~------~--gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls--------~~A~NALLKtLEEPp 147 (709)
T PRK08691 84 AGRYVDLLEIDAASN------T--GIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS--------KSAFNAMLKTLEEPP 147 (709)
T ss_pred ccCccceEEEecccc------C--CHHHHHHHHHHHHhhhhhCCcEEEEEECccccC--------HHHHHHHHHHHHhCC
Confidence 01123344443211 1 1234555555432 2345799999999884 3367888888874
Q ss_pred CCcEEEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccC
Q 005511 169 GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRF 248 (693)
Q Consensus 169 ~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 248 (693)
+.+.+|++|+.+. .+.+.+++||..+.|+.++.++....|+.++.+ .++.++++++..+++.+.|.+
T Consensus 148 ~~v~fILaTtd~~-----kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~k----Egi~id~eAL~~Ia~~A~Gsl---- 214 (709)
T PRK08691 148 EHVKFILATTDPH-----KVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDS----EKIAYEPPALQLLGRAAAGSM---- 214 (709)
T ss_pred CCcEEEEEeCCcc-----ccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHH----cCCCcCHHHHHHHHHHhCCCH----
Confidence 5688888888765 678899999999999999999999999988774 678899999999999998764
Q ss_pred CchhhhhHHHHHhhH
Q 005511 249 LPDKAIDLIDEAGSR 263 (693)
Q Consensus 249 ~~~~~~~ll~~a~~~ 263 (693)
++++.+|+.++..
T Consensus 215 --RdAlnLLDqaia~ 227 (709)
T PRK08691 215 --RDALSLLDQAIAL 227 (709)
T ss_pred --HHHHHHHHHHHHh
Confidence 8899999887753
No 110
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=5e-18 Score=186.15 Aligned_cols=203 Identities=19% Similarity=0.206 Sum_probs=154.8
Q ss_pred hhhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCCCCe-EEECCCCChHHHHHHHHHHHHhcCCCCC--------------
Q 005511 30 TNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNP-CLIGEPGVGKTAIAEGLAQRIASGDVPD-------------- 94 (693)
Q Consensus 30 ~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~~~v-Ll~Gp~GtGKT~la~~la~~l~~~~~~~-------------- 94 (693)
..|.++|||.+|++++|++..++.|.+++......|. ||+||+||||||+|+.+|+.+++.....
T Consensus 4 ~vla~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~ 83 (618)
T PRK14951 4 LVLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQA 83 (618)
T ss_pred HHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHH
Confidence 3589999999999999999999999999998877776 8999999999999999999998632100
Q ss_pred -----CCCCceEEEEeccccccCCcccchHHHHHHHHHHHHHh----CCCeEEEEeccchhhhCCCCCChHhHHHHHhhh
Q 005511 95 -----TIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQ----SDEIILFIDEVHTLIGAGAAEGAIDAANILKPS 165 (693)
Q Consensus 95 -----~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~----~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~ 165 (693)
......++.++...- . ....++.++..+.. +...|++|||+|.|.. ..++.|++.
T Consensus 84 C~~i~~g~h~D~~eldaas~------~--~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~--------~a~NaLLKt 147 (618)
T PRK14951 84 CRDIDSGRFVDYTELDAASN------R--GVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN--------TAFNAMLKT 147 (618)
T ss_pred HHHHHcCCCCceeecCcccc------c--CHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH--------HHHHHHHHh
Confidence 001123444443211 1 12335555555432 3356999999999953 368888888
Q ss_pred hcC--CCcEEEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhh
Q 005511 166 LAR--GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQY 243 (693)
Q Consensus 166 l~~--~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 243 (693)
++. ..+.+|++|+.+. .+.+.+++||..++|..++.++....++..+.+ .++.++++++..+++.+.|.
T Consensus 148 LEEPP~~~~fIL~Ttd~~-----kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~----egi~ie~~AL~~La~~s~Gs 218 (618)
T PRK14951 148 LEEPPEYLKFVLATTDPQ-----KVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAA----ENVPAEPQALRLLARAARGS 218 (618)
T ss_pred cccCCCCeEEEEEECCch-----hhhHHHHHhceeeecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC
Confidence 885 5577888887765 567889999999999999999999999887764 57889999999999998876
Q ss_pred hcccCCchhhhhHHHHHhhH
Q 005511 244 ISDRFLPDKAIDLIDEAGSR 263 (693)
Q Consensus 244 ~~~~~~~~~~~~ll~~a~~~ 263 (693)
+ +++.++++.++..
T Consensus 219 l------R~al~lLdq~ia~ 232 (618)
T PRK14951 219 M------RDALSLTDQAIAF 232 (618)
T ss_pred H------HHHHHHHHHHHHh
Confidence 4 7888888776654
No 111
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.79 E-value=2.3e-18 Score=165.83 Aligned_cols=190 Identities=21% Similarity=0.307 Sum_probs=134.0
Q ss_pred HHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCC-cceeee--ccccc
Q 005511 369 KMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE-EAMIRL--DMSEF 445 (693)
Q Consensus 369 ~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~-~~~~~~--~~~~~ 445 (693)
+++..-+.++.||+.++..|++++.+ +. .+++|||||||||||+.|+++|+.+++.+ .+...+ +.++.
T Consensus 29 KYrPkt~de~~gQe~vV~~L~~a~~~-~~--------lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSde 99 (346)
T KOG0989|consen 29 KYRPKTFDELAGQEHVVQVLKNALLR-RI--------LPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDE 99 (346)
T ss_pred HhCCCcHHhhcchHHHHHHHHHHHhh-cC--------CceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccc
Confidence 45556678899999999999999986 21 13799999999999999999999997621 222222 22221
Q ss_pred cchhhhhhhcCCCCCCcCcCcc--chhhHHH------HcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeec
Q 005511 446 MERHTVSKLIGSPPGYVGYTEG--GQLTEAV------RRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDF 517 (693)
Q Consensus 446 ~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~------~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~ 517 (693)
.+.. .+.+... ..+.... -..++.|++|||+|.++.+.|++|.+.||+ ..
T Consensus 100 rGis-----------vvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~-----------~s 157 (346)
T KOG0989|consen 100 RGIS-----------VVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMED-----------FS 157 (346)
T ss_pred cccc-----------chhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhc-----------cc
Confidence 1110 0000000 0000000 012347999999999999999999999998 24
Q ss_pred CCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHH
Q 005511 518 KNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIM 597 (693)
Q Consensus 518 ~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~ 597 (693)
.+++||+.+|.-+. +.+.+.+|| ..+.|+++..+++.+.++..
T Consensus 158 ~~trFiLIcnylsr------------------------------------ii~pi~SRC-~KfrFk~L~d~~iv~rL~~I 200 (346)
T KOG0989|consen 158 RTTRFILICNYLSR------------------------------------IIRPLVSRC-QKFRFKKLKDEDIVDRLEKI 200 (346)
T ss_pred cceEEEEEcCChhh------------------------------------CChHHHhhH-HHhcCCCcchHHHHHHHHHH
Confidence 57899999997665 678999999 99999999999888877655
Q ss_pred HHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHH
Q 005511 598 LKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIM 641 (693)
Q Consensus 598 l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~ 641 (693)
.... | +.+++++++++++. ...+||+++.
T Consensus 201 a~~E-------~--v~~d~~al~~I~~~------S~GdLR~Ait 229 (346)
T KOG0989|consen 201 ASKE-------G--VDIDDDALKLIAKI------SDGDLRRAIT 229 (346)
T ss_pred HHHh-------C--CCCCHHHHHHHHHH------cCCcHHHHHH
Confidence 4431 4 45999999999983 3446777766
No 112
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.8e-18 Score=185.45 Aligned_cols=213 Identities=24% Similarity=0.305 Sum_probs=162.4
Q ss_pred HHhhhhhhhhcCCCCCccCCHHHHHHHHHHH---h---------cCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCC
Q 005511 28 YGTNLTKLAEEGKLDPVVGRQPQIERVVQIL---G---------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDT 95 (693)
Q Consensus 28 ~~~~l~~~~~~~~~~~iiG~~~~~~~l~~~l---~---------~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~ 95 (693)
.+....+.--.-+|.++.|.++.++.+.+++ + ..-|.+++|+||||||||.||+++|.+.
T Consensus 136 kak~~~~~~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA-------- 207 (596)
T COG0465 136 KAKLYLEDQVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-------- 207 (596)
T ss_pred HHHHhcccccCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc--------
Confidence 3333333323347999999999998877654 3 2447899999999999999999999887
Q ss_pred CCCceEEEEeccccccCCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCC---ChH---hHHHHHhhhhc--
Q 005511 96 IEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAE---GAI---DAANILKPSLA-- 167 (693)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~---~~~---~~~~~L~~~l~-- 167 (693)
+.++++++.+++. ..++|--..+++.+|..+++..|||+||||+|.....+... +.. ...+.|+..++
T Consensus 208 --~VPFf~iSGS~FV--emfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF 283 (596)
T COG0465 208 --GVPFFSISGSDFV--EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF 283 (596)
T ss_pred --CCCceeccchhhh--hhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccC
Confidence 8889999998887 55677777889999999999999999999999997655322 222 24555555554
Q ss_pred --CCCcEEEEEechHHHHhhhhcCHHHhc--cCC-ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhh
Q 005511 168 --RGELQCIGATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQ 242 (693)
Q Consensus 168 --~~~v~vI~~t~~~~~~~~~~l~~~l~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 242 (693)
+..++++++||+++ -+|++|+| ||+ .|.++.|+...|.+|++.+.+...... +-.+..+++.+.|
T Consensus 284 ~~~~gviviaaTNRpd-----VlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~-----~Vdl~~iAr~tpG 353 (596)
T COG0465 284 GGNEGVIVIAATNRPD-----VLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAE-----DVDLKKIARGTPG 353 (596)
T ss_pred CCCCceEEEecCCCcc-----cchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCC-----cCCHHHHhhhCCC
Confidence 34689999999998 58999999 998 899999999999999997665422121 1224458888888
Q ss_pred hhcccCCchhhhhHHHHHhhHHHHh
Q 005511 243 YISDRFLPDKAIDLIDEAGSRVRLR 267 (693)
Q Consensus 243 ~~~~~~~~~~~~~ll~~a~~~~~~~ 267 (693)
+.+ .+..+++.+|+-.+..+
T Consensus 354 fsG-----AdL~nl~NEAal~aar~ 373 (596)
T COG0465 354 FSG-----ADLANLLNEAALLAARR 373 (596)
T ss_pred ccc-----chHhhhHHHHHHHHHHh
Confidence 876 67788887776655443
No 113
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.78 E-value=4.9e-18 Score=183.92 Aligned_cols=203 Identities=22% Similarity=0.239 Sum_probs=154.5
Q ss_pred hhhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCCCC-eEEECCCCChHHHHHHHHHHHHhcCCCCC--------------
Q 005511 30 TNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDVPD-------------- 94 (693)
Q Consensus 30 ~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~~~-vLl~Gp~GtGKT~la~~la~~l~~~~~~~-------------- 94 (693)
.+|.++|||.+|++++|++..++.|...+......| +||+||+|+|||++|+.+|+.+.+.....
T Consensus 4 ~~La~KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~ 83 (546)
T PRK14957 4 QALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAIN 83 (546)
T ss_pred hhHHHHHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHh
Confidence 468999999999999999999999999998876666 68999999999999999999987632110
Q ss_pred CCCCceEEEEeccccccCCcccchHHHHHHHHHHHHH----hCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC--
Q 005511 95 TIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR-- 168 (693)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~----~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~-- 168 (693)
......++.++...- .| ...++.++..+. .+...|++|||+|.|.. ..++.|++.++.
T Consensus 84 ~~~~~dlieidaas~------~g--vd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~--------~a~naLLK~LEepp 147 (546)
T PRK14957 84 NNSFIDLIEIDAASR------TG--VEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK--------QSFNALLKTLEEPP 147 (546)
T ss_pred cCCCCceEEeecccc------cC--HHHHHHHHHHHHhhhhcCCcEEEEEechhhccH--------HHHHHHHHHHhcCC
Confidence 001124444443211 11 122334444332 34567999999999943 478899999986
Q ss_pred CCcEEEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccC
Q 005511 169 GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRF 248 (693)
Q Consensus 169 ~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 248 (693)
+.+.+|++|+... .+.+.+++|+..++|.+++.++....++..+.+ .++.++++++..++..+.|.+
T Consensus 148 ~~v~fIL~Ttd~~-----kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~----egi~~e~~Al~~Ia~~s~Gdl---- 214 (546)
T PRK14957 148 EYVKFILATTDYH-----KIPVTILSRCIQLHLKHISQADIKDQLKIILAK----ENINSDEQSLEYIAYHAKGSL---- 214 (546)
T ss_pred CCceEEEEECChh-----hhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH----
Confidence 4677888887654 567789999999999999999999888887764 568899999999999998754
Q ss_pred CchhhhhHHHHHhhH
Q 005511 249 LPDKAIDLIDEAGSR 263 (693)
Q Consensus 249 ~~~~~~~ll~~a~~~ 263 (693)
+.++.+++.++..
T Consensus 215 --R~alnlLek~i~~ 227 (546)
T PRK14957 215 --RDALSLLDQAISF 227 (546)
T ss_pred --HHHHHHHHHHHHh
Confidence 7888999887754
No 114
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.78 E-value=5.1e-18 Score=182.78 Aligned_cols=204 Identities=21% Similarity=0.238 Sum_probs=156.7
Q ss_pred hhhhhhhhcCCCCCccCCHHHHHHHHHHHhcCC-CCCeEEECCCCChHHHHHHHHHHHHhcCCCCC--------------
Q 005511 30 TNLTKLAEEGKLDPVVGRQPQIERVVQILGRRT-KNNPCLIGEPGVGKTAIAEGLAQRIASGDVPD-------------- 94 (693)
Q Consensus 30 ~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~-~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~-------------- 94 (693)
.+|.++|||.+|++++||+..++.|...+.... ++++||+||+||||||+|+.+|+.+.+.....
T Consensus 9 ~~la~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C 88 (507)
T PRK06645 9 IPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNC 88 (507)
T ss_pred cchhhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHH
Confidence 578999999999999999999999999776654 46789999999999999999999997632110
Q ss_pred ----CCCCceEEEEeccccccCCcccchHHHHHHHHHHHHHh----CCCeEEEEeccchhhhCCCCCChHhHHHHHhhhh
Q 005511 95 ----TIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQ----SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSL 166 (693)
Q Consensus 95 ----~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~----~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l 166 (693)
......++.++...- .....++.++..+.. +...|++|||+|.+.. ..++.|+..+
T Consensus 89 ~~i~~~~h~Dv~eidaas~--------~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~--------~a~naLLk~L 152 (507)
T PRK06645 89 ISFNNHNHPDIIEIDAASK--------TSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK--------GAFNALLKTL 152 (507)
T ss_pred HHHhcCCCCcEEEeeccCC--------CCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH--------HHHHHHHHHH
Confidence 011234455543211 112345566655542 3456999999999843 4678888888
Q ss_pred cC--CCcEEEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhh
Q 005511 167 AR--GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYI 244 (693)
Q Consensus 167 ~~--~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 244 (693)
+. ..+.+|++|+... .+.+.+.+|+..++|+.++.++...+++..+++ .++.++++++..+++.+.|.+
T Consensus 153 Eepp~~~vfI~aTte~~-----kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~----egi~ie~eAL~~Ia~~s~Gsl 223 (507)
T PRK06645 153 EEPPPHIIFIFATTEVQ-----KIPATIISRCQRYDLRRLSFEEIFKLLEYITKQ----ENLKTDIEALRIIAYKSEGSA 223 (507)
T ss_pred hhcCCCEEEEEEeCChH-----HhhHHHHhcceEEEccCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH
Confidence 75 4577788887665 578899999999999999999999999988874 578899999999999887753
Q ss_pred cccCCchhhhhHHHHHhhHH
Q 005511 245 SDRFLPDKAIDLIDEAGSRV 264 (693)
Q Consensus 245 ~~~~~~~~~~~ll~~a~~~~ 264 (693)
+.+.++++.++...
T Consensus 224 ------R~al~~Ldkai~~~ 237 (507)
T PRK06645 224 ------RDAVSILDQAASMS 237 (507)
T ss_pred ------HHHHHHHHHHHHhh
Confidence 88999998886543
No 115
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.78 E-value=1.7e-17 Score=172.01 Aligned_cols=182 Identities=24% Similarity=0.331 Sum_probs=132.1
Q ss_pred CCCCCccCCHHHHHHHHHHHh-----cCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCC
Q 005511 39 GKLDPVVGRQPQIERVVQILG-----RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGT 113 (693)
Q Consensus 39 ~~~~~iiG~~~~~~~l~~~l~-----~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (693)
++|++++||++++++|..++. ...+.+++|+||||||||++++++|+.+ +.++..........
T Consensus 1 ~~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~----------~~~~~~~~~~~~~~-- 68 (305)
T TIGR00635 1 KLLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM----------GVNLKITSGPALEK-- 68 (305)
T ss_pred CCHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh----------CCCEEEeccchhcC--
Confidence 368999999999999888776 3456789999999999999999999998 33444443322111
Q ss_pred cccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC--------------------CCcEE
Q 005511 114 KYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--------------------GELQC 173 (693)
Q Consensus 114 ~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--------------------~~v~v 173 (693)
.+. +...+..+ ..+.+|||||+|.+.+. ..+.|...++. ..+.+
T Consensus 69 --~~~----l~~~l~~~--~~~~vl~iDEi~~l~~~--------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 132 (305)
T TIGR00635 69 --PGD----LAAILTNL--EEGDVLFIDEIHRLSPA--------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTL 132 (305)
T ss_pred --chh----HHHHHHhc--ccCCEEEEehHhhhCHH--------HHHHhhHHHhhhheeeeeccCccccceeecCCCeEE
Confidence 111 22333332 23559999999998543 34445544432 22678
Q ss_pred EEEechHHHHhhhhcCHHHhccCC-ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchh
Q 005511 174 IGATTLDEYRKHIEKDPALERRFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDK 252 (693)
Q Consensus 174 I~~t~~~~~~~~~~l~~~l~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 252 (693)
|++|+.+. .+++++++||. .+.|++|+.+++.++++..+.. .++.+++++++.+++.+.|+ |+.
T Consensus 133 i~~t~~~~-----~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~----~~~~~~~~al~~ia~~~~G~------pR~ 197 (305)
T TIGR00635 133 VGATTRAG-----MLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGL----LNVEIEPEAALEIARRSRGT------PRI 197 (305)
T ss_pred EEecCCcc-----ccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHH----hCCCcCHHHHHHHHHHhCCC------cch
Confidence 88888775 68899999997 7899999999999999977763 46789999999999988876 466
Q ss_pred hhhHHHHHhhH
Q 005511 253 AIDLIDEAGSR 263 (693)
Q Consensus 253 ~~~ll~~a~~~ 263 (693)
+..++..+...
T Consensus 198 ~~~ll~~~~~~ 208 (305)
T TIGR00635 198 ANRLLRRVRDF 208 (305)
T ss_pred HHHHHHHHHHH
Confidence 77777765433
No 116
>PRK15115 response regulator GlrR; Provisional
Probab=99.78 E-value=5.1e-17 Score=177.81 Aligned_cols=227 Identities=15% Similarity=0.211 Sum_probs=166.7
Q ss_pred cccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcC
Q 005511 377 RVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIG 456 (693)
Q Consensus 377 ~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g 456 (693)
.++|.+..+..+.+.+...... ..++++.|++||||+++|++++......+.+|+.+||..+......+.++|
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~-------~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg 207 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQS-------DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFG 207 (444)
T ss_pred cccccCHHHHHHHHHHHhhccC-------CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcC
Confidence 3566666665555555443211 125999999999999999999999876778999999999876666667888
Q ss_pred CCCCC-cCcCccchhhHHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhh
Q 005511 457 SPPGY-VGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEK 535 (693)
Q Consensus 457 ~~~~~-~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~ 535 (693)
+..+. .|... .-.+.+..+.+++|||||++.+++..|..|+..++++.+...++......++++|++|+......
T Consensus 208 ~~~~~~~~~~~--~~~g~~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~-- 283 (444)
T PRK15115 208 HARGAFTGAVS--NREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKA-- 283 (444)
T ss_pred CCcCCCCCCcc--CCCCcEEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHH--
Confidence 76542 22221 11234456778999999999999999999999999998765555444456899999998543211
Q ss_pred cccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCc-EEEcCCC--CHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 005511 536 GGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDE-MIVFRQL--TKLEVKEIADIMLKEVFDRLKTKDIEL 612 (693)
Q Consensus 536 ~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~-~v~f~~l--~~~~~~~i~~~~l~~~~~~~~~~~~~l 612 (693)
...+.|+++|+.|++. .|.+||| ..+|+..+++.+++++...... ...
T Consensus 284 ---------------------------~~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~--~~~ 334 (444)
T PRK15115 284 ---------------------------MARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKP--FVR 334 (444)
T ss_pred ---------------------------HHcCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCC--CCC
Confidence 1122488999999955 4888888 4578999999999887654421 122
Q ss_pred EeCHHHHHHHHHhccCCCCCcchHHHHHHHHHH
Q 005511 613 QVTERFRERVVEEGYNPSYGARPLRRAIMRLLE 645 (693)
Q Consensus 613 ~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~ 645 (693)
.+++++++.|..+.|++| .|+|+++|++++.
T Consensus 335 ~~~~~a~~~L~~~~WpgN--vreL~~~i~~~~~ 365 (444)
T PRK15115 335 AFSTDAMKRLMTASWPGN--VRQLVNVIEQCVA 365 (444)
T ss_pred CcCHHHHHHHHhCCCCCh--HHHHHHHHHHHHH
Confidence 589999999999666555 9999999998764
No 117
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.78 E-value=2e-18 Score=181.82 Aligned_cols=191 Identities=21% Similarity=0.341 Sum_probs=132.3
Q ss_pred HHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCc----ceeeec-cc
Q 005511 369 KMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE----AMIRLD-MS 443 (693)
Q Consensus 369 ~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~----~~~~~~-~~ 443 (693)
+++..-+++++||+.++..|..++...+.+ +.+||+||+|||||++|+++|+.+++... ++..++ |.
T Consensus 11 KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~--------ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~ 82 (484)
T PRK14956 11 KYRPQFFRDVIHQDLAIGALQNALKSGKIG--------HAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCL 82 (484)
T ss_pred HhCCCCHHHHhChHHHHHHHHHHHHcCCCC--------eEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHH
Confidence 455667789999999999998888765321 34899999999999999999999865321 111111 11
Q ss_pred cccchhhhhhhcC-CCCCCcCcCccchhhHHHHc----CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecC
Q 005511 444 EFMERHTVSKLIG-SPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFK 518 (693)
Q Consensus 444 ~~~~~~~~~~l~g-~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~ 518 (693)
.+.. ....+++- ......|....+.+.+.+.. ..+.|+||||+|+++...+|+||+.||+ +..
T Consensus 83 ~i~~-g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEE-----------Pp~ 150 (484)
T PRK14956 83 EITK-GISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEE-----------PPA 150 (484)
T ss_pred HHHc-cCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhc-----------CCC
Confidence 1110 00001110 00112233233444444432 3457999999999999999999999998 456
Q ss_pred CeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHHH
Q 005511 519 NTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIML 598 (693)
Q Consensus 519 ~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l 598 (693)
+++||++|+.... +.+.+++|| +.+.|.+++.+++.+.+.+.+
T Consensus 151 ~viFILaTte~~k------------------------------------I~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~ 193 (484)
T PRK14956 151 HIVFILATTEFHK------------------------------------IPETILSRC-QDFIFKKVPLSVLQDYSEKLC 193 (484)
T ss_pred ceEEEeecCChhh------------------------------------ccHHHHhhh-heeeecCCCHHHHHHHHHHHH
Confidence 8889999885433 789999999 899999999999988887766
Q ss_pred HHHHHHHhcCCCeEEeCHHHHHHHHHh
Q 005511 599 KEVFDRLKTKDIELQVTERFRERVVEE 625 (693)
Q Consensus 599 ~~~~~~~~~~~~~l~~~~~~~~~l~~~ 625 (693)
.. .| +.++++++..|++.
T Consensus 194 ~~-------Eg--i~~e~eAL~~Ia~~ 211 (484)
T PRK14956 194 KI-------EN--VQYDQEGLFWIAKK 211 (484)
T ss_pred HH-------cC--CCCCHHHHHHHHHH
Confidence 53 14 45899999999984
No 118
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.78 E-value=8e-18 Score=184.17 Aligned_cols=227 Identities=19% Similarity=0.257 Sum_probs=171.5
Q ss_pred cccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcC
Q 005511 377 RVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIG 456 (693)
Q Consensus 377 ~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g 456 (693)
.++|.+..++.+...+...... ..++++.|++||||+++|+.++........+|+.+||+.+.+....+.+||
T Consensus 140 ~lig~s~~~~~l~~~i~~~a~~-------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg 212 (445)
T TIGR02915 140 GLITSSPGMQKICRTIEKIAPS-------DITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFG 212 (445)
T ss_pred ceeecCHHHHHHHHHHHHHhCC-------CCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcC
Confidence 4667777777777766654211 125999999999999999999998876778999999999876655667888
Q ss_pred CCCC-CcCcCccchhhHHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhh
Q 005511 457 SPPG-YVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEK 535 (693)
Q Consensus 457 ~~~~-~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~ 535 (693)
+..+ +.|.. ....+.+..+.+|+|||||++.+++.+|..|+++++++.+...++......++++|++|+........
T Consensus 213 ~~~~~~~~~~--~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~ 290 (445)
T TIGR02915 213 YEKGAFTGAV--KQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIA 290 (445)
T ss_pred CCCCCcCCCc--cCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHH
Confidence 7654 23321 11223455678899999999999999999999999999877655555555689999999865432211
Q ss_pred cccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCc-EEEcCCC--CHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 005511 536 GGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDE-MIVFRQL--TKLEVKEIADIMLKEVFDRLKTKDIEL 612 (693)
Q Consensus 536 ~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~-~v~f~~l--~~~~~~~i~~~~l~~~~~~~~~~~~~l 612 (693)
.+.|+++|+.|+.. .|.+||| ..+|+..+++.++.++....... ..
T Consensus 291 -----------------------------~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~--~~ 339 (445)
T TIGR02915 291 -----------------------------EGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRK--TK 339 (445)
T ss_pred -----------------------------cCCccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCC--CC
Confidence 12388999999854 4888888 56799999999999887655321 23
Q ss_pred EeCHHHHHHHHHhccCCCCCcchHHHHHHHHHH
Q 005511 613 QVTERFRERVVEEGYNPSYGARPLRRAIMRLLE 645 (693)
Q Consensus 613 ~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~ 645 (693)
.+++++++.|..+.|++| .|+|+++|++++.
T Consensus 340 ~~~~~a~~~L~~~~wpgN--vreL~~~i~~a~~ 370 (445)
T TIGR02915 340 GFTDDALRALEAHAWPGN--VRELENKVKRAVI 370 (445)
T ss_pred CCCHHHHHHHHhCCCCCh--HHHHHHHHHHHHH
Confidence 589999999999666555 9999999998875
No 119
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.78 E-value=7e-18 Score=160.70 Aligned_cols=185 Identities=19% Similarity=0.265 Sum_probs=139.7
Q ss_pred HHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchh
Q 005511 370 MEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 449 (693)
Q Consensus 370 ~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~ 449 (693)
++...+.+++||+++++++.-.++.++... ..+-|+||+||||.||||+|..+|+++ +.++-....+.+..+
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~----e~lDHvLl~GPPGlGKTTLA~IIA~Em---gvn~k~tsGp~leK~- 91 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAAKKRG----EALDHVLLFGPPGLGKTTLAHIIANEL---GVNLKITSGPALEKP- 91 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHHHHhcC----CCcCeEEeeCCCCCcHHHHHHHHHHHh---cCCeEecccccccCh-
Confidence 445567789999999999999998887543 234589999999999999999999998 555544333322211
Q ss_pred hhhhhcCCCCCCcCcCccchhhHHHHc-CCCEEEEEccCcccCHHHHHHHHHHhhcceeeC--CC-----CCeeecCCeE
Q 005511 450 TVSKLIGSPPGYVGYTEGGQLTEAVRR-RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTD--SK-----GRTVDFKNTL 521 (693)
Q Consensus 450 ~~~~l~g~~~~~~g~~~~~~l~~~~~~-~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~--~~-----~~~~~~~~~~ 521 (693)
+.+...+.. .++.|||||||+++++.+-+.|...||+.++.. .. ...++.+.+.
T Consensus 92 ------------------gDlaaiLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFT 153 (332)
T COG2255 92 ------------------GDLAAILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFT 153 (332)
T ss_pred ------------------hhHHHHHhcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCee
Confidence 333344433 346799999999999999999999999987643 11 2345667888
Q ss_pred EEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHHHHHH
Q 005511 522 LIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEV 601 (693)
Q Consensus 522 iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l~~~ 601 (693)
+|.+|+.... +..+|.+||..+..+..|+.+|+.+|+.+.-..+
T Consensus 154 LIGATTr~G~------------------------------------lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l 197 (332)
T COG2255 154 LIGATTRAGM------------------------------------LTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKIL 197 (332)
T ss_pred Eeeecccccc------------------------------------ccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHh
Confidence 8888774432 7789999999999999999999999997655432
Q ss_pred HHHHhcCCCeEEeCHHHHHHHHHh
Q 005511 602 FDRLKTKDIELQVTERFRERVVEE 625 (693)
Q Consensus 602 ~~~~~~~~~~l~~~~~~~~~l~~~ 625 (693)
.+.+++++...+++.
T Consensus 198 ---------~i~i~~~~a~eIA~r 212 (332)
T COG2255 198 ---------GIEIDEEAALEIARR 212 (332)
T ss_pred ---------CCCCChHHHHHHHHh
Confidence 255888888888875
No 120
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.78 E-value=4.7e-18 Score=186.67 Aligned_cols=228 Identities=21% Similarity=0.252 Sum_probs=159.1
Q ss_pred CCCCCCCCCccHHHHHh-----hhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCCCCeEEECCCCChHHHHHHHHHHHHh
Q 005511 14 GGGSSGNKMPTLEEYGT-----NLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIA 88 (693)
Q Consensus 14 ~~~~~~~~~~~l~~~~~-----~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~ 88 (693)
..+.+..++..|.+.-. ||.+++||.+|++++|++..++.+...+..+.+.++||+||||||||++|+++++.+.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 111 (531)
T TIGR02902 32 IDKESKKELEKLNKMRAIRLTEPLSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAK 111 (531)
T ss_pred eehhhhHHHHHHHHhhhhhhcchHHHhhCcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 34455566666776544 9999999999999999999999999988888889999999999999999999988764
Q ss_pred cCCCCCCCCCceEEEEeccccccCCc-c----cchHHHHH-------------HHHHHHHHhCCCeEEEEeccchhhhCC
Q 005511 89 SGDVPDTIEGKKVITLDMGLLVAGTK-Y----RGEFEERL-------------KKLMEEIKQSDEIILFIDEVHTLIGAG 150 (693)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~~~-~----~g~~~~~l-------------~~~~~~~~~~~~~vL~iDEid~l~~~~ 150 (693)
.+.......+.+++.+++.......+ . .+.....+ ....+.+.+..+.+|||||++.|.+
T Consensus 112 ~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~-- 189 (531)
T TIGR02902 112 KNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHP-- 189 (531)
T ss_pred hccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCH--
Confidence 32211111246788888753210000 0 00000000 0001122344567999999999954
Q ss_pred CCCChHhHHHHHhhhhcCC------------------------------CcEEEEEechHHHHhhhhcCHHHhccCCccc
Q 005511 151 AAEGAIDAANILKPSLARG------------------------------ELQCIGATTLDEYRKHIEKDPALERRFQPVK 200 (693)
Q Consensus 151 ~~~~~~~~~~~L~~~l~~~------------------------------~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~ 200 (693)
..++.|.+.++.+ ++.+|++|+.... .+++++++||..+.
T Consensus 190 ------~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~----~L~paLrsR~~~I~ 259 (531)
T TIGR02902 190 ------VQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPE----EIPPALRSRCVEIF 259 (531)
T ss_pred ------HHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcc----cCChHHhhhhheee
Confidence 3677777766532 2466777665432 68999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhhhhHHHHHhhHH
Q 005511 201 VPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRV 264 (693)
Q Consensus 201 ~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~a~~~~ 264 (693)
|++++.+++.+|++..+++ .++.+++++++.++..+. ..+.+.++++.|+..+
T Consensus 260 f~pL~~eei~~Il~~~a~k----~~i~is~~al~~I~~y~~-------n~Rel~nll~~Aa~~A 312 (531)
T TIGR02902 260 FRPLLDEEIKEIAKNAAEK----IGINLEKHALELIVKYAS-------NGREAVNIVQLAAGIA 312 (531)
T ss_pred CCCCCHHHHHHHHHHHHHH----cCCCcCHHHHHHHHHhhh-------hHHHHHHHHHHHHHHH
Confidence 9999999999999988875 457889999987776542 2377778887776543
No 121
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=9.8e-18 Score=182.27 Aligned_cols=201 Identities=21% Similarity=0.214 Sum_probs=151.2
Q ss_pred hhhhhhhhcCCCCCccCCHHHHHHHHHHHhcCC-CCCeEEECCCCChHHHHHHHHHHHHhcCCCCC--------------
Q 005511 30 TNLTKLAEEGKLDPVVGRQPQIERVVQILGRRT-KNNPCLIGEPGVGKTAIAEGLAQRIASGDVPD-------------- 94 (693)
Q Consensus 30 ~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~-~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~-------------- 94 (693)
.+|+++|||.+|++++|++.+++.|..++.... .+.+||+||+|||||++|+.+|+.+.+...+.
T Consensus 4 ~~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~ 83 (624)
T PRK14959 4 ASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVT 83 (624)
T ss_pred chHHHHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHh
Confidence 479999999999999999999999999988765 56778999999999999999999997632111
Q ss_pred CCCCceEEEEeccccccCCcccchHHHHHHHHHHHH----HhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC--
Q 005511 95 TIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEI----KQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR-- 168 (693)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~----~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~-- 168 (693)
...+..+++++...- .+ ...++.+...+ ......|+||||+|.|. ...++.|++.++.
T Consensus 84 ~g~hpDv~eId~a~~------~~--Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt--------~~a~naLLk~LEEP~ 147 (624)
T PRK14959 84 QGMHVDVVEIDGASN------RG--IDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT--------REAFNALLKTLEEPP 147 (624)
T ss_pred cCCCCceEEEecccc------cC--HHHHHHHHHHHHhhhhcCCceEEEEEChHhCC--------HHHHHHHHHHhhccC
Confidence 011223555543211 11 12233332222 23445799999999994 3367888888875
Q ss_pred CCcEEEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccC
Q 005511 169 GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRF 248 (693)
Q Consensus 169 ~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 248 (693)
..+++|++|+.+. .+.+.+++||..+.|+.++.++...+|+..+.+ .++.++++++..+++.+.|.+
T Consensus 148 ~~~ifILaTt~~~-----kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~----egi~id~eal~lIA~~s~Gdl---- 214 (624)
T PRK14959 148 ARVTFVLATTEPH-----KFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGR----EGVDYDPAAVRLIARRAAGSV---- 214 (624)
T ss_pred CCEEEEEecCChh-----hhhHHHHhhhhccccCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH----
Confidence 5678888888765 467789999999999999999999999887663 567899999999999997754
Q ss_pred CchhhhhHHHHHh
Q 005511 249 LPDKAIDLIDEAG 261 (693)
Q Consensus 249 ~~~~~~~ll~~a~ 261 (693)
+.++.+|+.+.
T Consensus 215 --R~Al~lLeqll 225 (624)
T PRK14959 215 --RDSMSLLGQVL 225 (624)
T ss_pred --HHHHHHHHHHH
Confidence 78888888653
No 122
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.77 E-value=1.4e-17 Score=180.16 Aligned_cols=202 Identities=20% Similarity=0.256 Sum_probs=152.0
Q ss_pred hhhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCCCC-eEEECCCCChHHHHHHHHHHHHhcCCCCC--------------
Q 005511 30 TNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDVPD-------------- 94 (693)
Q Consensus 30 ~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~~~-vLl~Gp~GtGKT~la~~la~~l~~~~~~~-------------- 94 (693)
..|.++|||.+|++++||+..++.+..++.....+| +||+||+|+|||++|+.+|+.+.+.....
T Consensus 4 ~~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~ 83 (605)
T PRK05896 4 ITFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESIN 83 (605)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHH
Confidence 479999999999999999999999999987755554 78999999999999999999997632211
Q ss_pred CCCCceEEEEeccccccCCcccchHHHHHHHHHHHHHh----CCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC--
Q 005511 95 TIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQ----SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR-- 168 (693)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~----~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~-- 168 (693)
......++.++.+.. . ....++.+...+.. +...|++|||+|.|.. ...+.|+..++.
T Consensus 84 ~~~h~DiieIdaas~------i--gVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~--------~A~NaLLKtLEEPp 147 (605)
T PRK05896 84 TNQSVDIVELDAASN------N--GVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST--------SAWNALLKTLEEPP 147 (605)
T ss_pred cCCCCceEEeccccc------c--CHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH--------HHHHHHHHHHHhCC
Confidence 001123444443211 1 12234455444432 3456999999999843 367889998884
Q ss_pred CCcEEEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccC
Q 005511 169 GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRF 248 (693)
Q Consensus 169 ~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 248 (693)
..+++|++|+.+. .+.+++++||..++|++++.++....++..+.+ .++.++++++..++.++.|.+
T Consensus 148 ~~tvfIL~Tt~~~-----KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~k----egi~Is~eal~~La~lS~Gdl---- 214 (605)
T PRK05896 148 KHVVFIFATTEFQ-----KIPLTIISRCQRYNFKKLNNSELQELLKSIAKK----EKIKIEDNAIDKIADLADGSL---- 214 (605)
T ss_pred CcEEEEEECCChH-----hhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCcH----
Confidence 4577777777665 678999999999999999999999999887764 567899999999999987753
Q ss_pred CchhhhhHHHHHhh
Q 005511 249 LPDKAIDLIDEAGS 262 (693)
Q Consensus 249 ~~~~~~~ll~~a~~ 262 (693)
+.+..+++....
T Consensus 215 --R~AlnlLekL~~ 226 (605)
T PRK05896 215 --RDGLSILDQLST 226 (605)
T ss_pred --HHHHHHHHHHHh
Confidence 778888887544
No 123
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.77 E-value=2.4e-17 Score=177.51 Aligned_cols=204 Identities=23% Similarity=0.243 Sum_probs=155.9
Q ss_pred hhhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCCCCe-EEECCCCChHHHHHHHHHHHHhcCCCCC--------------
Q 005511 30 TNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNP-CLIGEPGVGKTAIAEGLAQRIASGDVPD-------------- 94 (693)
Q Consensus 30 ~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~~~v-Ll~Gp~GtGKT~la~~la~~l~~~~~~~-------------- 94 (693)
..|.++|||.+|++++||+.+++.|...+.....+|+ ||+||+|+|||++|+.+++.+.+...+.
T Consensus 2 ~~l~~KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~ 81 (535)
T PRK08451 2 QALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSAL 81 (535)
T ss_pred ccHHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHh
Confidence 4689999999999999999999999999988777776 8999999999999999999986532211
Q ss_pred CCCCceEEEEeccccccCCcccchHHHHHHHHHHHHHh----CCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC--
Q 005511 95 TIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQ----SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR-- 168 (693)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~----~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~-- 168 (693)
...+..++.++.+.- . ....++.+...+.. +...|++|||+|.|. .++++.|++.++.
T Consensus 82 ~~~h~dv~eldaas~------~--gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt--------~~A~NALLK~LEEpp 145 (535)
T PRK08451 82 ENRHIDIIEMDAASN------R--GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT--------KEAFNALLKTLEEPP 145 (535)
T ss_pred hcCCCeEEEeccccc------c--CHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------HHHHHHHHHHHhhcC
Confidence 012234444442211 1 12334454444321 335699999999994 4478899999985
Q ss_pred CCcEEEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccC
Q 005511 169 GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRF 248 (693)
Q Consensus 169 ~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 248 (693)
..+.+|++|+.+. .+.+++++|+..++|.+++.++....++..+.+ .++.++++++..+++.+.|.
T Consensus 146 ~~t~FIL~ttd~~-----kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~----EGi~i~~~Al~~Ia~~s~Gd----- 211 (535)
T PRK08451 146 SYVKFILATTDPL-----KLPATILSRTQHFRFKQIPQNSIISHLKTILEK----EGVSYEPEALEILARSGNGS----- 211 (535)
T ss_pred CceEEEEEECChh-----hCchHHHhhceeEEcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCc-----
Confidence 4577888887764 688999999999999999999999988887764 57889999999999998775
Q ss_pred CchhhhhHHHHHhhHH
Q 005511 249 LPDKAIDLIDEAGSRV 264 (693)
Q Consensus 249 ~~~~~~~ll~~a~~~~ 264 (693)
.+++..+++.++...
T Consensus 212 -lR~alnlLdqai~~~ 226 (535)
T PRK08451 212 -LRDTLTLLDQAIIYC 226 (535)
T ss_pred -HHHHHHHHHHHHHhc
Confidence 388889998877543
No 124
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.76 E-value=4.2e-17 Score=182.64 Aligned_cols=150 Identities=29% Similarity=0.394 Sum_probs=112.5
Q ss_pred EEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCCcCcCcc-------chhhHHHHcCCCE
Q 005511 408 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG-------GQLTEAVRRRPYT 480 (693)
Q Consensus 408 ~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~-------~~l~~~~~~~~~~ 480 (693)
++||.|.||+|||.+..++|+.. +..++++|+++.. ..-+|+|+... ..++ ..+..+++. ++
T Consensus 1545 pilLEGsPGVGKTSlItaLAr~t---G~kliRINLSeQT---dL~DLfGsd~P---ve~~Gef~w~dapfL~amr~--G~ 1613 (4600)
T COG5271 1545 PILLEGSPGVGKTSLITALARKT---GKKLIRINLSEQT---DLCDLFGSDLP---VEEGGEFRWMDAPFLHAMRD--GG 1613 (4600)
T ss_pred ceeecCCCCccHHHHHHHHHHHh---cCceEEeeccccc---hHHHHhCCCCC---cccCceeEecccHHHHHhhc--CC
Confidence 49999999999999999999997 8899999999876 45668886322 1122 334455554 56
Q ss_pred EEEEccCcccCHHHHHHHHHHhhcce-eeCCC-CCeee-cCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHH
Q 005511 481 VVLFDEIEKAHPDVFNMMLQILEDGR-LTDSK-GRTVD-FKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIK 557 (693)
Q Consensus 481 vl~iDEid~l~~~~~~~Ll~~le~~~-~~~~~-~~~~~-~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~ 557 (693)
++++||++-++.+|++.|..+++... ...+. ..+.+ .+|+++++|-|+... |
T Consensus 1614 WVlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~q---------g---------------- 1668 (4600)
T COG5271 1614 WVLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQ---------G---------------- 1668 (4600)
T ss_pred EEEeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhc---------C----------------
Confidence 99999999999999999999998743 22222 22222 458899999886432 0
Q ss_pred HHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHHHH
Q 005511 558 SLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLK 599 (693)
Q Consensus 558 ~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l~ 599 (693)
.-++.++..|++|| .+|.+..|+.+|+..|+.....
T Consensus 1669 -----gGRKgLPkSF~nRF-svV~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1669 -----GGRKGLPKSFLNRF-SVVKMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred -----CCcccCCHHHhhhh-heEEecccccchHHHHHHhhCC
Confidence 01122889999999 8999999999999999977654
No 125
>PRK04195 replication factor C large subunit; Provisional
Probab=99.76 E-value=5.5e-18 Score=185.42 Aligned_cols=193 Identities=21% Similarity=0.270 Sum_probs=147.7
Q ss_pred hhhhhhhhcCCCCCccCCHHHHHHHHHHHhc----CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEe
Q 005511 30 TNLTKLAEEGKLDPVVGRQPQIERVVQILGR----RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLD 105 (693)
Q Consensus 30 ~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~----~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 105 (693)
-+|+++|||.++++++|+++++++|..++.. .+++++||+||||||||++|+++|+.+ +..++.++
T Consensus 2 ~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el----------~~~~ieln 71 (482)
T PRK04195 2 MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY----------GWEVIELN 71 (482)
T ss_pred CCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc----------CCCEEEEc
Confidence 3799999999999999999999999988764 236889999999999999999999998 67788888
Q ss_pred ccccccCCcccchHHHHHHHHHHHHHh------CCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCCcEEEEEech
Q 005511 106 MGLLVAGTKYRGEFEERLKKLMEEIKQ------SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTL 179 (693)
Q Consensus 106 ~~~l~~~~~~~g~~~~~l~~~~~~~~~------~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~t~~ 179 (693)
+++... ...+..++..+.. ..+.+|+|||+|.+.... .....+.|..+++.....+|+++|.
T Consensus 72 asd~r~--------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~----d~~~~~aL~~~l~~~~~~iIli~n~ 139 (482)
T PRK04195 72 ASDQRT--------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE----DRGGARAILELIKKAKQPIILTAND 139 (482)
T ss_pred cccccc--------HHHHHHHHHHhhccCcccCCCCeEEEEecCccccccc----chhHHHHHHHHHHcCCCCEEEeccC
Confidence 765321 1123333333321 246799999999986421 2224566777777777778888887
Q ss_pred HHHHhhhhcCH-HHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhhhhHHH
Q 005511 180 DEYRKHIEKDP-ALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLID 258 (693)
Q Consensus 180 ~~~~~~~~l~~-~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~ 258 (693)
+. .+.+ .+++|+..|.|++|+.+++..+++.++.+ .++.++++++..++..+.|.+ +.++..|.
T Consensus 140 ~~-----~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~----egi~i~~eaL~~Ia~~s~GDl------R~ain~Lq 204 (482)
T PRK04195 140 PY-----DPSLRELRNACLMIEFKRLSTRSIVPVLKRICRK----EGIECDDEALKEIAERSGGDL------RSAINDLQ 204 (482)
T ss_pred cc-----ccchhhHhccceEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH------HHHHHHHH
Confidence 54 4555 78889999999999999999999988764 678899999999999887654 55666554
Q ss_pred H
Q 005511 259 E 259 (693)
Q Consensus 259 ~ 259 (693)
.
T Consensus 205 ~ 205 (482)
T PRK04195 205 A 205 (482)
T ss_pred H
Confidence 4
No 126
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.76 E-value=4.1e-17 Score=179.87 Aligned_cols=203 Identities=23% Similarity=0.269 Sum_probs=155.6
Q ss_pred hhhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCCCC-eEEECCCCChHHHHHHHHHHHHhcCCCCCC-------------
Q 005511 30 TNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDVPDT------------- 95 (693)
Q Consensus 30 ~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~~~-vLl~Gp~GtGKT~la~~la~~l~~~~~~~~------------- 95 (693)
..|.++|||.+|++++||+.+++.|.+.+......| +||+||+|||||++|+.+|+.+.+...+..
T Consensus 4 ~al~~k~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~ 83 (559)
T PRK05563 4 QALYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAIT 83 (559)
T ss_pred HHHHHHhCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHh
Confidence 457899999999999999999999999998877666 578999999999999999999976432110
Q ss_pred -CCCceEEEEeccccccCCcccchHHHHHHHHHHHHH----hCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC--
Q 005511 96 -IEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR-- 168 (693)
Q Consensus 96 -~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~----~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~-- 168 (693)
..+..++.++.+. ......++.+...+. .+...|++|||+|.|. ....+.|++.++.
T Consensus 84 ~g~~~dv~eidaas--------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt--------~~a~naLLKtLEepp 147 (559)
T PRK05563 84 NGSLMDVIEIDAAS--------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS--------TGAFNALLKTLEEPP 147 (559)
T ss_pred cCCCCCeEEeeccc--------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------HHHHHHHHHHhcCCC
Confidence 1223455555421 112234555555544 3446799999999994 3368888888885
Q ss_pred CCcEEEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccC
Q 005511 169 GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRF 248 (693)
Q Consensus 169 ~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 248 (693)
..+++|++|+.+. .+.+.+++|+..++|+.|+.++....++..+++ .++.++++++..++..+.|.
T Consensus 148 ~~~ifIlatt~~~-----ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~----egi~i~~~al~~ia~~s~G~----- 213 (559)
T PRK05563 148 AHVIFILATTEPH-----KIPATILSRCQRFDFKRISVEDIVERLKYILDK----EGIEYEDEALRLIARAAEGG----- 213 (559)
T ss_pred CCeEEEEEeCChh-----hCcHHHHhHheEEecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC-----
Confidence 4567777777665 688999999999999999999999999887764 67889999999999988764
Q ss_pred CchhhhhHHHHHhhH
Q 005511 249 LPDKAIDLIDEAGSR 263 (693)
Q Consensus 249 ~~~~~~~ll~~a~~~ 263 (693)
.+++..+|+.+...
T Consensus 214 -~R~al~~Ldq~~~~ 227 (559)
T PRK05563 214 -MRDALSILDQAISF 227 (559)
T ss_pred -HHHHHHHHHHHHHh
Confidence 37888888877653
No 127
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.76 E-value=1.3e-17 Score=183.07 Aligned_cols=217 Identities=27% Similarity=0.352 Sum_probs=150.3
Q ss_pred HHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHh-------cCCCcceeeeccc
Q 005511 371 EETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYY-------FGSEEAMIRLDMS 443 (693)
Q Consensus 371 ~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l-------~~~~~~~~~~~~~ 443 (693)
+..-+++++||+.+++.+..++. +. .+ .++||+||||||||++|+++++.. +..+.+|+.+||+
T Consensus 60 rp~~f~~iiGqs~~i~~l~~al~----~~----~~-~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~ 130 (531)
T TIGR02902 60 RPKSFDEIIGQEEGIKALKAALC----GP----NP-QHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDAT 130 (531)
T ss_pred CcCCHHHeeCcHHHHHHHHHHHh----CC----CC-ceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccc
Confidence 34456689999999988876532 11 12 369999999999999999999764 1225789999987
Q ss_pred cc--cchhhhhhhcCCC--CCCcCcCc------cchhhHHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCC-
Q 005511 444 EF--MERHTVSKLIGSP--PGYVGYTE------GGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKG- 512 (693)
Q Consensus 444 ~~--~~~~~~~~l~g~~--~~~~g~~~------~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~- 512 (693)
.. ........++|.. +.|.|... ...-.+.+..+.+++|||||++.+++..|+.|++.|+++.+....+
T Consensus 131 ~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~ 210 (531)
T TIGR02902 131 TARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAY 210 (531)
T ss_pred cccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeecccc
Confidence 42 2211222344432 11222110 0112345667889999999999999999999999999987543211
Q ss_pred -----C-----------eeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhcc
Q 005511 513 -----R-----------TVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRL 576 (693)
Q Consensus 513 -----~-----------~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~ 576 (693)
. .-...++++|++|+.... .++|++++||
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~-----------------------------------~L~paLrsR~ 255 (531)
T TIGR02902 211 YNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPE-----------------------------------EIPPALRSRC 255 (531)
T ss_pred ccccCcccccchhhhcccCcccceEEEEEecCCcc-----------------------------------cCChHHhhhh
Confidence 0 011346788877764331 0789999999
Q ss_pred CcEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHHHHH
Q 005511 577 DEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLE 645 (693)
Q Consensus 577 ~~~v~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~ 645 (693)
..+.|+||+.+++.+|++..+++. + +.+++++++.|..+ .+ +.|++.+.++.+..
T Consensus 256 -~~I~f~pL~~eei~~Il~~~a~k~-------~--i~is~~al~~I~~y--~~--n~Rel~nll~~Aa~ 310 (531)
T TIGR02902 256 -VEIFFRPLLDEEIKEIAKNAAEKI-------G--INLEKHALELIVKY--AS--NGREAVNIVQLAAG 310 (531)
T ss_pred -heeeCCCCCHHHHHHHHHHHHHHc-------C--CCcCHHHHHHHHHh--hh--hHHHHHHHHHHHHH
Confidence 789999999999999998877542 3 45899999988874 44 37899988886654
No 128
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.76 E-value=9.1e-18 Score=182.82 Aligned_cols=192 Identities=19% Similarity=0.253 Sum_probs=132.3
Q ss_pred HHHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCc----ceeeec-c
Q 005511 368 LKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE----AMIRLD-M 442 (693)
Q Consensus 368 ~~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~----~~~~~~-~ 442 (693)
.+++...+++++||+.+++.|.+.+...+. .+.+||+||+|||||++|+++++.+++... ++..+. |
T Consensus 8 rKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL--------~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sC 79 (830)
T PRK07003 8 RKWRPKDFASLVGQEHVVRALTHALDGGRL--------HHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRAC 79 (830)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHhcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHH
Confidence 345666788999999999999888864421 234799999999999999999999965321 221110 1
Q ss_pred ccccchhhhhhhcC-CCCCCcCcCccchhhHHHHc----CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeec
Q 005511 443 SEFMERHTVSKLIG-SPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDF 517 (693)
Q Consensus 443 ~~~~~~~~~~~l~g-~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~ 517 (693)
..+.. ....+++- ......|..+.+.+.+.+.. ..+.|+||||+|+|+...+|.||+.||+ ..
T Consensus 80 r~I~~-G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEE-----------PP 147 (830)
T PRK07003 80 REIDE-GRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEE-----------PP 147 (830)
T ss_pred HHHhc-CCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHh-----------cC
Confidence 11110 00001110 00111222222333333322 3468999999999999999999999998 45
Q ss_pred CCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHH
Q 005511 518 KNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIM 597 (693)
Q Consensus 518 ~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~ 597 (693)
.+++||++||.... +.+.+++|| ..+.|.+++.+++.+.+.+.
T Consensus 148 ~~v~FILaTtd~~K------------------------------------Ip~TIrSRC-q~f~Fk~Ls~eeIv~~L~~I 190 (830)
T PRK07003 148 PHVKFILATTDPQK------------------------------------IPVTVLSRC-LQFNLKQMPAGHIVSHLERI 190 (830)
T ss_pred CCeEEEEEECChhh------------------------------------ccchhhhhe-EEEecCCcCHHHHHHHHHHH
Confidence 68899999985544 678999999 99999999999999998777
Q ss_pred HHHHHHHHhcCCCeEEeCHHHHHHHHHh
Q 005511 598 LKEVFDRLKTKDIELQVTERFRERVVEE 625 (693)
Q Consensus 598 l~~~~~~~~~~~~~l~~~~~~~~~l~~~ 625 (693)
+... + +.+++++++.|++.
T Consensus 191 l~~E-------g--I~id~eAL~lIA~~ 209 (830)
T PRK07003 191 LGEE-------R--IAFEPQALRLLARA 209 (830)
T ss_pred HHHc-------C--CCCCHHHHHHHHHH
Confidence 6531 3 34788888888874
No 129
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.5e-17 Score=154.88 Aligned_cols=163 Identities=25% Similarity=0.424 Sum_probs=123.2
Q ss_pred hccccChHHHHHHHHHHHHHH--------hhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeecccccc
Q 005511 375 HKRVIGQDEAVKAISRAIRRA--------RVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFM 446 (693)
Q Consensus 375 ~~~v~g~~~~~~~l~~~~~~~--------~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~ 446 (693)
..++.|.+-.+..+++++... ..|+.+| .++|+|||||||||++|+++|+.. ...|+++..+++.
T Consensus 154 y~diggld~qkqeireavelplt~~~ly~qigidpp----rgvllygppg~gktml~kava~~t---~a~firvvgsefv 226 (408)
T KOG0727|consen 154 YADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPP----RGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFV 226 (408)
T ss_pred ccccccchhhHHHHHHHHhccchHHHHHHHhCCCCC----cceEEeCCCCCcHHHHHHHHhhcc---chheeeeccHHHH
Confidence 345666666666666665432 2344444 369999999999999999999986 7889999999998
Q ss_pred chhhhhhhcCCCCCCcCcCcc--chhhHHHHcCCCEEEEEccCccc-----------CHHHHHHHHHHhhcceeeCCCCC
Q 005511 447 ERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKA-----------HPDVFNMMLQILEDGRLTDSKGR 513 (693)
Q Consensus 447 ~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~l-----------~~~~~~~Ll~~le~~~~~~~~~~ 513 (693)
.+ |.|+..+ +.+|..++.+.++|+||||+|.+ +.++|..|+.++..-.-.+
T Consensus 227 qk------------ylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfd---- 290 (408)
T KOG0727|consen 227 QK------------YLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFD---- 290 (408)
T ss_pred HH------------HhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcC----
Confidence 76 7776655 77888999999999999999987 4567777766663210000
Q ss_pred eeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHh--hccCcEEEcCCCCHHHHH
Q 005511 514 TVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFL--NRLDEMIVFRQLTKLEVK 591 (693)
Q Consensus 514 ~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~--~R~~~~v~f~~l~~~~~~ 591 (693)
...|+-+|++||.... ++|+|+ +|+|..|.|+.+++.+.+
T Consensus 291 --q~~nvkvimatnradt------------------------------------ldpallrpgrldrkiefplpdrrqkr 332 (408)
T KOG0727|consen 291 --QTTNVKVIMATNRADT------------------------------------LDPALLRPGRLDRKIEFPLPDRRQKR 332 (408)
T ss_pred --cccceEEEEecCcccc------------------------------------cCHhhcCCccccccccCCCCchhhhh
Confidence 2348899999997665 889999 799999999999998877
Q ss_pred HHHHHHH
Q 005511 592 EIADIML 598 (693)
Q Consensus 592 ~i~~~~l 598 (693)
-++....
T Consensus 333 lvf~tit 339 (408)
T KOG0727|consen 333 LVFSTIT 339 (408)
T ss_pred hhHHhhh
Confidence 6665433
No 130
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=1.7e-17 Score=181.48 Aligned_cols=203 Identities=19% Similarity=0.224 Sum_probs=155.1
Q ss_pred hhhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCCCCe-EEECCCCChHHHHHHHHHHHHhcCCCCC---C----------
Q 005511 30 TNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNP-CLIGEPGVGKTAIAEGLAQRIASGDVPD---T---------- 95 (693)
Q Consensus 30 ~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~~~v-Ll~Gp~GtGKT~la~~la~~l~~~~~~~---~---------- 95 (693)
..|.++|||.+|++++|++.+++.|..++.....+|. ||+||+|+||||+|+.+|+.+.+..... +
T Consensus 4 ~~l~~k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~ 83 (527)
T PRK14969 4 QVLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEID 83 (527)
T ss_pred HHHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 3589999999999999999999999999998777775 8999999999999999999997632110 0
Q ss_pred -CCCceEEEEeccccccCCcccchHHHHHHHHHHHHHh----CCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC--
Q 005511 96 -IEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQ----SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR-- 168 (693)
Q Consensus 96 -~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~----~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~-- 168 (693)
.....++.++.+.- .....++.++..+.. +...|++|||+|.|.. ...+.|++.++.
T Consensus 84 ~~~~~d~~ei~~~~~--------~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~--------~a~naLLK~LEepp 147 (527)
T PRK14969 84 SGRFVDLIEVDAASN--------TQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK--------SAFNAMLKTLEEPP 147 (527)
T ss_pred cCCCCceeEeecccc--------CCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH--------HHHHHHHHHHhCCC
Confidence 01123444443211 112345555555532 3456999999999943 368888888886
Q ss_pred CCcEEEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccC
Q 005511 169 GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRF 248 (693)
Q Consensus 169 ~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 248 (693)
..+.+|++|+.+. .+.+.+++||..+.|+.++.++....+...+.+ .++.++++++..+++.+.|.+
T Consensus 148 ~~~~fIL~t~d~~-----kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~----egi~~~~~al~~la~~s~Gsl---- 214 (527)
T PRK14969 148 EHVKFILATTDPQ-----KIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQ----ENIPFDATALQLLARAAAGSM---- 214 (527)
T ss_pred CCEEEEEEeCChh-----hCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH----
Confidence 5678888887765 567789999999999999999999888877763 568889999999999987753
Q ss_pred CchhhhhHHHHHhhH
Q 005511 249 LPDKAIDLIDEAGSR 263 (693)
Q Consensus 249 ~~~~~~~ll~~a~~~ 263 (693)
+++..+++.+...
T Consensus 215 --r~al~lldqai~~ 227 (527)
T PRK14969 215 --RDALSLLDQAIAY 227 (527)
T ss_pred --HHHHHHHHHHHHh
Confidence 7889999887654
No 131
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.75 E-value=3.3e-17 Score=180.68 Aligned_cols=202 Identities=24% Similarity=0.300 Sum_probs=153.0
Q ss_pred hhhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCCCCe-EEECCCCChHHHHHHHHHHHHhcCCCCCC-----------CC
Q 005511 30 TNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNP-CLIGEPGVGKTAIAEGLAQRIASGDVPDT-----------IE 97 (693)
Q Consensus 30 ~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~~~v-Ll~Gp~GtGKT~la~~la~~l~~~~~~~~-----------~~ 97 (693)
..|.++|||.+|++++||+.+++.|...+......|. ||+||+|+|||++|+.+|+.+.+...... ..
T Consensus 6 ~~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~ 85 (725)
T PRK07133 6 KALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNN 85 (725)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcC
Confidence 5799999999999999999999999999988766665 89999999999999999999976321100 01
Q ss_pred CceEEEEeccccccCCcccchHHHHHHHHHHHHHh----CCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC--CCc
Q 005511 98 GKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQ----SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--GEL 171 (693)
Q Consensus 98 ~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~----~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~v 171 (693)
+..++.++... . .....++.+...+.. +...|++|||+|.|.. .+++.|+..|+. ..+
T Consensus 86 ~~Dvieidaas------n--~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~--------~A~NALLKtLEEPP~~t 149 (725)
T PRK07133 86 SLDIIEMDAAS------N--NGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK--------SAFNALLKTLEEPPKHV 149 (725)
T ss_pred CCcEEEEeccc------c--CCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH--------HHHHHHHHHhhcCCCce
Confidence 12233332211 0 112335555555542 4567999999999843 378889988885 457
Q ss_pred EEEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCch
Q 005511 172 QCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPD 251 (693)
Q Consensus 172 ~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 251 (693)
++|++|+.+. .+.+.+++||+.++|.+++.++....++..+.+ .++.++++++..++.++.|.+ +
T Consensus 150 ifILaTte~~-----KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~k----egI~id~eAl~~LA~lS~Gsl------R 214 (725)
T PRK07133 150 IFILATTEVH-----KIPLTILSRVQRFNFRRISEDEIVSRLEFILEK----ENISYEKNALKLIAKLSSGSL------R 214 (725)
T ss_pred EEEEEcCChh-----hhhHHHHhhceeEEccCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH------H
Confidence 7788887665 678899999999999999999999999887764 568889999999999998753 7
Q ss_pred hhhhHHHHHhh
Q 005511 252 KAIDLIDEAGS 262 (693)
Q Consensus 252 ~~~~ll~~a~~ 262 (693)
.+..+++....
T Consensus 215 ~AlslLekl~~ 225 (725)
T PRK07133 215 DALSIAEQVSI 225 (725)
T ss_pred HHHHHHHHHHH
Confidence 77887776543
No 132
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=3.5e-17 Score=177.39 Aligned_cols=202 Identities=24% Similarity=0.253 Sum_probs=153.2
Q ss_pred hhhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCCCCe-EEECCCCChHHHHHHHHHHHHhcCC-CCC------------C
Q 005511 30 TNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNP-CLIGEPGVGKTAIAEGLAQRIASGD-VPD------------T 95 (693)
Q Consensus 30 ~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~~~v-Ll~Gp~GtGKT~la~~la~~l~~~~-~~~------------~ 95 (693)
..|.++|||.+|++++||+.+++.|..++......|. ||+|||||||||+|+++|+.+.+.. .+. .
T Consensus 2 ~~l~~KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~ 81 (504)
T PRK14963 2 SALYQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRR 81 (504)
T ss_pred chHHHhhCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhc
Confidence 3567999999999999999999999999998877777 9999999999999999999997521 110 0
Q ss_pred CCCceEEEEeccccccCCcccchHHHHHHHHHHHHH----hCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC--C
Q 005511 96 IEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--G 169 (693)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~----~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~ 169 (693)
.....++.++.... .+ ...++.+...+. ...+.|++|||+|.+. ...++.|+..++. .
T Consensus 82 ~~h~dv~el~~~~~------~~--vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls--------~~a~naLLk~LEep~~ 145 (504)
T PRK14963 82 GAHPDVLEIDAASN------NS--VEDVRDLREKVLLAPLRGGRKVYILDEAHMMS--------KSAFNALLKTLEEPPE 145 (504)
T ss_pred CCCCceEEeccccc------CC--HHHHHHHHHHHhhccccCCCeEEEEECccccC--------HHHHHHHHHHHHhCCC
Confidence 12234555554311 11 223444433332 2356799999999873 3467778888875 4
Q ss_pred CcEEEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCC
Q 005511 170 ELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFL 249 (693)
Q Consensus 170 ~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 249 (693)
.+++|++++.+. .+.+.+.+|+..++|++|+.++....++..+.+ .++.++++++..++..+.|.+
T Consensus 146 ~t~~Il~t~~~~-----kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~----egi~i~~~Al~~ia~~s~Gdl----- 211 (504)
T PRK14963 146 HVIFILATTEPE-----KMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEA----EGREAEPEALQLVARLADGAM----- 211 (504)
T ss_pred CEEEEEEcCChh-----hCChHHhcceEEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH-----
Confidence 567777777665 688999999999999999999999999988764 578899999999999998764
Q ss_pred chhhhhHHHHHhh
Q 005511 250 PDKAIDLIDEAGS 262 (693)
Q Consensus 250 ~~~~~~ll~~a~~ 262 (693)
+.+...|+.++.
T Consensus 212 -R~aln~Lekl~~ 223 (504)
T PRK14963 212 -RDAESLLERLLA 223 (504)
T ss_pred -HHHHHHHHHHHh
Confidence 778888877643
No 133
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=6.5e-18 Score=181.79 Aligned_cols=193 Identities=19% Similarity=0.275 Sum_probs=133.5
Q ss_pred HHHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCC---------ccee
Q 005511 368 LKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE---------EAMI 438 (693)
Q Consensus 368 ~~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~---------~~~~ 438 (693)
.+++...+++++||+.+++.|.+.+...+.. +.+||+||+|||||++|+++|+.+++.+ .++.
T Consensus 8 rKYRPqtFddVIGQe~vv~~L~~al~~gRLp--------HA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG 79 (700)
T PRK12323 8 RKWRPRDFTTLVGQEHVVRALTHALEQQRLH--------HAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCG 79 (700)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHHhCCCc--------eEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCc
Confidence 3456667889999999999999998765422 3479999999999999999999996521 1222
Q ss_pred eeccccccchhhhhhhcC-CCCCCcCcCccchhhHHHHc----CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCC
Q 005511 439 RLDMSEFMERHTVSKLIG-SPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGR 513 (693)
Q Consensus 439 ~~~~~~~~~~~~~~~l~g-~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~ 513 (693)
.++....+......+++- ......|..+.+.+.+.+.. ..+.|+||||+|+|+...+|.||+.||+
T Consensus 80 ~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEE--------- 150 (700)
T PRK12323 80 QCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEE--------- 150 (700)
T ss_pred ccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhcc---------
Confidence 111000000001111111 00112333333444444432 3467999999999999999999999998
Q ss_pred eeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHH
Q 005511 514 TVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEI 593 (693)
Q Consensus 514 ~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i 593 (693)
+..+++||++||.... +.+.+++|| ..+.|.+++.+++.+.
T Consensus 151 --PP~~v~FILaTtep~k------------------------------------LlpTIrSRC-q~f~f~~ls~eei~~~ 191 (700)
T PRK12323 151 --PPEHVKFILATTDPQK------------------------------------IPVTVLSRC-LQFNLKQMPPGHIVSH 191 (700)
T ss_pred --CCCCceEEEEeCChHh------------------------------------hhhHHHHHH-HhcccCCCChHHHHHH
Confidence 4567889999885544 678999999 9999999999999988
Q ss_pred HHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHh
Q 005511 594 ADIMLKEVFDRLKTKDIELQVTERFRERVVEE 625 (693)
Q Consensus 594 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~ 625 (693)
+.+.+... + +.+++++++.|.+.
T Consensus 192 L~~Il~~E-------g--i~~d~eAL~~IA~~ 214 (700)
T PRK12323 192 LDAILGEE-------G--IAHEVNALRLLAQA 214 (700)
T ss_pred HHHHHHHc-------C--CCCCHHHHHHHHHH
Confidence 87776531 3 34777888777763
No 134
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.75 E-value=4.4e-17 Score=179.35 Aligned_cols=227 Identities=22% Similarity=0.302 Sum_probs=172.5
Q ss_pred cccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcC
Q 005511 377 RVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIG 456 (693)
Q Consensus 377 ~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g 456 (693)
.++|.+..+..+...+..... . ..++++.|++||||+++|++++....+...+|+.+||+.+......+.++|
T Consensus 135 ~lig~s~~~~~v~~~i~~~a~------~-~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg 207 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRLSR------S-DITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFG 207 (463)
T ss_pred ceeecCHHHHHHHHHHHHHhC------c-CCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcC
Confidence 356777777777666655321 1 125999999999999999999999877789999999999876656667888
Q ss_pred CCCC-CcCcCccchhhHHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhh
Q 005511 457 SPPG-YVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEK 535 (693)
Q Consensus 457 ~~~~-~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~ 535 (693)
+..+ +.|... .-.+.+..+.+|+|||||++.+++.+|..|+++++++.+...++......++++|++|+........
T Consensus 208 ~~~~~~~~~~~--~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~ 285 (463)
T TIGR01818 208 HEKGAFTGANT--RRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVR 285 (463)
T ss_pred CCCCCCCCccc--CCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHH
Confidence 7554 333322 1123445677899999999999999999999999999887666555555688999999865432211
Q ss_pred cccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCc-EEEcCCCC--HHHHHHHHHHHHHHHHHHHhcCCCe-
Q 005511 536 GGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDE-MIVFRQLT--KLEVKEIADIMLKEVFDRLKTKDIE- 611 (693)
Q Consensus 536 ~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~-~v~f~~l~--~~~~~~i~~~~l~~~~~~~~~~~~~- 611 (693)
.+.|.++|+.|+.. .|.++||. .+|+..+++.++.++.... +..
T Consensus 286 -----------------------------~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~---~~~~ 333 (463)
T TIGR01818 286 -----------------------------QGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAAREL---DVEP 333 (463)
T ss_pred -----------------------------cCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHh---CCCC
Confidence 12388999999965 68999996 7899999999999877654 222
Q ss_pred EEeCHHHHHHHHHhccCCCCCcchHHHHHHHHHHH
Q 005511 612 LQVTERFRERVVEEGYNPSYGARPLRRAIMRLLED 646 (693)
Q Consensus 612 l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~~ 646 (693)
..+++++++.|..++|++| .|+|++++++++..
T Consensus 334 ~~~~~~a~~~L~~~~wpgN--vreL~~~~~~~~~~ 366 (463)
T TIGR01818 334 KLLDPEALERLKQLRWPGN--VRQLENLCRWLTVM 366 (463)
T ss_pred CCcCHHHHHHHHhCCCCCh--HHHHHHHHHHHHHh
Confidence 2599999999999666665 99999999987753
No 135
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.75 E-value=3.1e-17 Score=184.37 Aligned_cols=200 Identities=25% Similarity=0.323 Sum_probs=151.4
Q ss_pred cCCCCCccCCHHHHHHHHHHHhc------------CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEe
Q 005511 38 EGKLDPVVGRQPQIERVVQILGR------------RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLD 105 (693)
Q Consensus 38 ~~~~~~iiG~~~~~~~l~~~l~~------------~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 105 (693)
..+|+++.|.+..++++.+++.. ..+++++|+||||||||+++++++.++ +.+++.++
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~----------~~~f~~is 217 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA----------KVPFFTIS 217 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc----------CCCEEEEe
Confidence 34688899998888877665431 336789999999999999999999988 77888888
Q ss_pred ccccccCCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCC---Ch---HhHHHHHhhhhc----CCCcEEEE
Q 005511 106 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAE---GA---IDAANILKPSLA----RGELQCIG 175 (693)
Q Consensus 106 ~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~---~~---~~~~~~L~~~l~----~~~v~vI~ 175 (693)
++.+. ..+.+.....++.+|..+....|+||||||+|.+...+... +. ....+.|+..++ +..+++|+
T Consensus 218 ~~~~~--~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIa 295 (644)
T PRK10733 218 GSDFV--EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIA 295 (644)
T ss_pred hHHhH--HhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEE
Confidence 87765 33456667788899999998899999999999997654321 11 123344433333 45689999
Q ss_pred EechHHHHhhhhcCHHHhc--cCC-ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchh
Q 005511 176 ATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDK 252 (693)
Q Consensus 176 ~t~~~~~~~~~~l~~~l~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 252 (693)
+||+++ .+|+++++ ||+ .+.++.|+.++|.+||+.++.+..... +..+..+++.+.||.+ ++
T Consensus 296 aTN~p~-----~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~-----~~d~~~la~~t~G~sg-----ad 360 (644)
T PRK10733 296 ATNRPD-----VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAP-----DIDAAIIARGTPGFSG-----AD 360 (644)
T ss_pred ecCChh-----hcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCC-----cCCHHHHHhhCCCCCH-----HH
Confidence 999998 79999998 998 899999999999999998887532211 1235567777777754 78
Q ss_pred hhhHHHHHhhHH
Q 005511 253 AIDLIDEAGSRV 264 (693)
Q Consensus 253 ~~~ll~~a~~~~ 264 (693)
...++.+|...+
T Consensus 361 l~~l~~eAa~~a 372 (644)
T PRK10733 361 LANLVNEAALFA 372 (644)
T ss_pred HHHHHHHHHHHH
Confidence 888888887654
No 136
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.75 E-value=4.4e-17 Score=179.34 Aligned_cols=203 Identities=21% Similarity=0.236 Sum_probs=155.6
Q ss_pred hhhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCCC-CeEEECCCCChHHHHHHHHHHHHhcCCC-CC-------------
Q 005511 30 TNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKN-NPCLIGEPGVGKTAIAEGLAQRIASGDV-PD------------- 94 (693)
Q Consensus 30 ~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~~-~vLl~Gp~GtGKT~la~~la~~l~~~~~-~~------------- 94 (693)
..|.++|||.+|++++||+..++.|..++...... .+||+||+|+|||++|+.+|+.+.+... ..
T Consensus 12 ~~la~KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~ 91 (598)
T PRK09111 12 RVLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEH 91 (598)
T ss_pred hhHHhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHH
Confidence 56899999999999999999999999999877655 5899999999999999999999976421 00
Q ss_pred -----CCCCceEEEEeccccccCCcccchHHHHHHHHHHHHHh----CCCeEEEEeccchhhhCCCCCChHhHHHHHhhh
Q 005511 95 -----TIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQ----SDEIILFIDEVHTLIGAGAAEGAIDAANILKPS 165 (693)
Q Consensus 95 -----~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~----~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~ 165 (693)
...+..++.++.... . ....++.++..+.. ....|++|||+|.|.. ...+.|++.
T Consensus 92 C~~i~~g~h~Dv~e~~a~s~------~--gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~--------~a~naLLKt 155 (598)
T PRK09111 92 CQAIMEGRHVDVLEMDAASH------T--GVDDIREIIESVRYRPVSARYKVYIIDEVHMLST--------AAFNALLKT 155 (598)
T ss_pred HHHHhcCCCCceEEeccccc------C--CHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH--------HHHHHHHHH
Confidence 011223444443211 1 12345666655532 3467999999999943 368888888
Q ss_pred hcC--CCcEEEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhh
Q 005511 166 LAR--GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQY 243 (693)
Q Consensus 166 l~~--~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 243 (693)
|+. ..+.+|++|+... .+.+.+++||..++|..++.++....++..+.+ .++.++++++..+++.+.+.
T Consensus 156 LEePp~~~~fIl~tte~~-----kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~k----egi~i~~eAl~lIa~~a~Gd 226 (598)
T PRK09111 156 LEEPPPHVKFIFATTEIR-----KVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAK----EGVEVEDEALALIARAAEGS 226 (598)
T ss_pred HHhCCCCeEEEEEeCChh-----hhhHHHHhheeEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC
Confidence 885 5678888887665 467889999999999999999999999888764 67889999999999998876
Q ss_pred hcccCCchhhhhHHHHHhhH
Q 005511 244 ISDRFLPDKAIDLIDEAGSR 263 (693)
Q Consensus 244 ~~~~~~~~~~~~ll~~a~~~ 263 (693)
+ +.+..+++.+...
T Consensus 227 l------r~al~~Ldkli~~ 240 (598)
T PRK09111 227 V------RDGLSLLDQAIAH 240 (598)
T ss_pred H------HHHHHHHHHHHhh
Confidence 4 7888888776543
No 137
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.75 E-value=5.9e-17 Score=162.24 Aligned_cols=159 Identities=13% Similarity=0.146 Sum_probs=115.9
Q ss_pred ceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCCcCcCcc--chhhHHHHc-----CC
Q 005511 406 IASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG--GQLTEAVRR-----RP 478 (693)
Q Consensus 406 ~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~-----~~ 478 (693)
+..++|+||||||||.+|+++|+.+ +.+++.++.+++.++ |+|+.++ +.++..++. ..
T Consensus 148 PlgllL~GPPGcGKTllAraiA~el---g~~~i~vsa~eL~sk------------~vGEsEk~IR~~F~~A~~~a~~~~a 212 (413)
T PLN00020 148 PLILGIWGGKGQGKSFQCELVFKKM---GIEPIVMSAGELESE------------NAGEPGKLIRQRYREAADIIKKKGK 212 (413)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHc---CCCeEEEEHHHhhcC------------cCCcHHHHHHHHHHHHHHHhhccCC
Confidence 3459999999999999999999998 889999999988854 9999886 666665543 35
Q ss_pred CEEEEEccCcccCHH------------HHHHHHHHhhcceeeCCCC---CeeecCCeEEEEecCCChhhhhhcccccccc
Q 005511 479 YTVVLFDEIEKAHPD------------VFNMMLQILEDGRLTDSKG---RTVDFKNTLLIMTSNVGSSVIEKGGRRIGFD 543 (693)
Q Consensus 479 ~~vl~iDEid~l~~~------------~~~~Ll~~le~~~~~~~~~---~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~ 543 (693)
+|||||||||.+.+. +...|+.++++-......| ..-...++.||+|||..+.
T Consensus 213 PcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~------------ 280 (413)
T PLN00020 213 MSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFST------------ 280 (413)
T ss_pred CeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCccc------------
Confidence 899999999988432 2367888887521110011 0113457889999997765
Q ss_pred cCcCcccchHHHHHHHHHHHHhhcCchhHhh--ccCcEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCHHHHHH
Q 005511 544 LDYDEKDSSYNRIKSLVTEELKQYFRPEFLN--RLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRER 621 (693)
Q Consensus 544 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~--R~~~~v~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~ 621 (693)
++|+|++ |||..+ ..|+.++..+|++.+++. ..++..-+..
T Consensus 281 ------------------------LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~-----------~~l~~~dv~~ 323 (413)
T PLN00020 281 ------------------------LYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRD-----------DGVSREDVVK 323 (413)
T ss_pred ------------------------CCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhcc-----------CCCCHHHHHH
Confidence 8899997 999875 478999999999877653 1244455555
Q ss_pred HHHhccCC
Q 005511 622 VVEEGYNP 629 (693)
Q Consensus 622 l~~~~~~~ 629 (693)
|++. ++.
T Consensus 324 Lv~~-f~g 330 (413)
T PLN00020 324 LVDT-FPG 330 (413)
T ss_pred HHHc-CCC
Confidence 6653 544
No 138
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.75 E-value=4.5e-17 Score=179.08 Aligned_cols=226 Identities=18% Similarity=0.268 Sum_probs=170.2
Q ss_pred cccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcC
Q 005511 377 RVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIG 456 (693)
Q Consensus 377 ~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g 456 (693)
.++|.+..+..+.+.+...... ..++++.|++||||+++|++++......+.+|+.+||..+......+.+||
T Consensus 144 ~ii~~S~~~~~~~~~~~~~a~~-------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg 216 (457)
T PRK11361 144 HILTNSPAMMDICKDTAKIALS-------QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFG 216 (457)
T ss_pred ceecccHHHhHHHHHHHHHcCC-------CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcC
Confidence 4667777777776666555321 135999999999999999999998877789999999999877666677888
Q ss_pred CCCC-CcCcCccchhhHHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhh
Q 005511 457 SPPG-YVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEK 535 (693)
Q Consensus 457 ~~~~-~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~ 535 (693)
+..+ +.|.... -.+.+..+.+|+|||||++.+++..|+.|+.+++++.+...++......++++|++||.....+..
T Consensus 217 ~~~~~~~~~~~~--~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~ 294 (457)
T PRK11361 217 HEKGAFTGAQTL--RQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVK 294 (457)
T ss_pred CCCCCCCCCCCC--CCCceEECCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHH
Confidence 7544 2232211 123455677899999999999999999999999998876555544445689999999865432211
Q ss_pred cccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCc-EEEcCCCC--HHHHHHHHHHHHHHHHHHHhcCCCe-
Q 005511 536 GGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDE-MIVFRQLT--KLEVKEIADIMLKEVFDRLKTKDIE- 611 (693)
Q Consensus 536 ~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~-~v~f~~l~--~~~~~~i~~~~l~~~~~~~~~~~~~- 611 (693)
.+.|+++|+.|+.. .|..+|+. .+|+..+++.++.++.... +..
T Consensus 295 -----------------------------~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~---~~~~ 342 (457)
T PRK11361 295 -----------------------------EGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSEN---QRDI 342 (457)
T ss_pred -----------------------------cCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHc---CCCC
Confidence 12388899999854 47888884 6889999999998876644 333
Q ss_pred EEeCHHHHHHHHHhccCCCCCcchHHHHHHHHHH
Q 005511 612 LQVTERFRERVVEEGYNPSYGARPLRRAIMRLLE 645 (693)
Q Consensus 612 l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~ 645 (693)
..+++++++.|..+.|++| .|+|++.|++++.
T Consensus 343 ~~~~~~a~~~L~~~~wpgN--v~eL~~~~~~~~~ 374 (457)
T PRK11361 343 IDIDPMAMSLLTAWSWPGN--IRELSNVIERAVV 374 (457)
T ss_pred CCcCHHHHHHHHcCCCCCc--HHHHHHHHHHHHH
Confidence 4589999999999666555 9999999998774
No 139
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.75 E-value=9.5e-18 Score=178.02 Aligned_cols=204 Identities=23% Similarity=0.268 Sum_probs=160.9
Q ss_pred hhhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCCCC-eEEECCCCChHHHHHHHHHHHHhcCCCCCC-------------
Q 005511 30 TNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDVPDT------------- 95 (693)
Q Consensus 30 ~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~~~-vLl~Gp~GtGKT~la~~la~~l~~~~~~~~------------- 95 (693)
..|..+|||.+|++++||+.+++.|...+....-.| .||+||.||||||+|+.+|+.+++...+..
T Consensus 4 q~L~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 4 QVLARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEIN 83 (515)
T ss_pred HHHHHHhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhh
Confidence 467899999999999999999999999998876655 578999999999999999999988542210
Q ss_pred -CCCceEEEEeccccccCCcccchHHHHHHHHHHHHH----hCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC--
Q 005511 96 -IEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR-- 168 (693)
Q Consensus 96 -~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~----~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~-- 168 (693)
.....+++++...- ...+.++.+.+.+. .+...|++|||+|.|. ....|+|++.+|.
T Consensus 84 ~g~~~DviEiDaASn--------~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS--------~~afNALLKTLEEPP 147 (515)
T COG2812 84 EGSLIDVIEIDAASN--------TGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS--------KQAFNALLKTLEEPP 147 (515)
T ss_pred cCCcccchhhhhhhc--------cChHHHHHHHHHhccCCccccceEEEEecHHhhh--------HHHHHHHhcccccCc
Confidence 00122222222111 12234556666553 3456799999999994 4478999999985
Q ss_pred CCcEEEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccC
Q 005511 169 GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRF 248 (693)
Q Consensus 169 ~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 248 (693)
.++.+|++|+.+. .+++.++|||+++.|...+.++....|..++. ..++.++++++..+++.+.|.+
T Consensus 148 ~hV~FIlATTe~~-----Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~----~E~I~~e~~aL~~ia~~a~Gs~---- 214 (515)
T COG2812 148 SHVKFILATTEPQ-----KIPNTILSRCQRFDFKRLDLEEIAKHLAAILD----KEGINIEEDALSLIARAAEGSL---- 214 (515)
T ss_pred cCeEEEEecCCcC-----cCchhhhhccccccccCCCHHHHHHHHHHHHH----hcCCccCHHHHHHHHHHcCCCh----
Confidence 4588899998887 79999999999999999999999998888877 4889999999999999998875
Q ss_pred CchhhhhHHHHHhhHH
Q 005511 249 LPDKAIDLIDEAGSRV 264 (693)
Q Consensus 249 ~~~~~~~ll~~a~~~~ 264 (693)
+++..+++.+....
T Consensus 215 --RDalslLDq~i~~~ 228 (515)
T COG2812 215 --RDALSLLDQAIAFG 228 (515)
T ss_pred --hhHHHHHHHHHHcc
Confidence 88999999887654
No 140
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=1.5e-17 Score=184.69 Aligned_cols=191 Identities=19% Similarity=0.288 Sum_probs=132.2
Q ss_pred HHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCC----cceeeec-cc
Q 005511 369 KMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE----EAMIRLD-MS 443 (693)
Q Consensus 369 ~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~----~~~~~~~-~~ 443 (693)
+++..-+.+|+||+.+++.|++++...+. .+.+||+||+|||||++|+++|+.+++.. .+|..++ |-
T Consensus 9 KyRP~tFddIIGQe~Iv~~LknaI~~~rl--------~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~ 80 (944)
T PRK14949 9 KWRPATFEQMVGQSHVLHALTNALTQQRL--------HHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCV 80 (944)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhCCC--------CeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHH
Confidence 45556678999999999999988875432 13469999999999999999999996532 1222211 00
Q ss_pred cccchhhhhhhc-CCCCCCcCcCccchhhHHHHc----CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecC
Q 005511 444 EFMERHTVSKLI-GSPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFK 518 (693)
Q Consensus 444 ~~~~~~~~~~l~-g~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~ 518 (693)
.+.. ....+++ -......+....+.+.+.+.. +.+.|+||||+|+|+...+|.||+.||+ +..
T Consensus 81 ~i~~-g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEE-----------PP~ 148 (944)
T PRK14949 81 EIAQ-GRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEE-----------PPE 148 (944)
T ss_pred HHhc-CCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc-----------cCC
Confidence 0000 0000010 000112232223444444432 3467999999999999999999999998 455
Q ss_pred CeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHHH
Q 005511 519 NTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIML 598 (693)
Q Consensus 519 ~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l 598 (693)
+++||++|+.... +.+.+++|| .++.|.+++.+++...+.+.+
T Consensus 149 ~vrFILaTTe~~k------------------------------------Ll~TIlSRC-q~f~fkpLs~eEI~~~L~~il 191 (944)
T PRK14949 149 HVKFLLATTDPQK------------------------------------LPVTVLSRC-LQFNLKSLTQDEIGTQLNHIL 191 (944)
T ss_pred CeEEEEECCCchh------------------------------------chHHHHHhh-eEEeCCCCCHHHHHHHHHHHH
Confidence 7788888875443 668999999 999999999999999887776
Q ss_pred HHHHHHHhcCCCeEEeCHHHHHHHHHh
Q 005511 599 KEVFDRLKTKDIELQVTERFRERVVEE 625 (693)
Q Consensus 599 ~~~~~~~~~~~~~l~~~~~~~~~l~~~ 625 (693)
... + +.+++++++.|+..
T Consensus 192 ~~E-------g--I~~edeAL~lIA~~ 209 (944)
T PRK14949 192 TQE-------Q--LPFEAEALTLLAKA 209 (944)
T ss_pred HHc-------C--CCCCHHHHHHHHHH
Confidence 541 3 45899999998874
No 141
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.74 E-value=6.3e-17 Score=170.61 Aligned_cols=202 Identities=21% Similarity=0.305 Sum_probs=145.5
Q ss_pred hhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccc
Q 005511 31 NLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLV 110 (693)
Q Consensus 31 ~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~ 110 (693)
.|+++|||.+|++++|++.++++|..++.....++++|+||||||||++|+++++.+.+.. .+.+++++++..+.
T Consensus 4 ~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~-----~~~~~~~i~~~~~~ 78 (337)
T PRK12402 4 LWTEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDP-----WENNFTEFNVADFF 78 (337)
T ss_pred chHHhhCCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcc-----cccceEEechhhhh
Confidence 6999999999999999999999999999887777999999999999999999999985421 12345677765542
Q ss_pred cCCc--------c---cc-------hHHHHHHHHHHHHHh-----CCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhc
Q 005511 111 AGTK--------Y---RG-------EFEERLKKLMEEIKQ-----SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA 167 (693)
Q Consensus 111 ~~~~--------~---~g-------~~~~~l~~~~~~~~~-----~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~ 167 (693)
.... + .+ .....++.+...... ..+.+|+|||+|.+.. ..++.|...++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~--------~~~~~L~~~le 150 (337)
T PRK12402 79 DQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE--------DAQQALRRIME 150 (337)
T ss_pred hcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH--------HHHHHHHHHHH
Confidence 1100 0 00 012233333333222 2345999999998843 24566777665
Q ss_pred C--CCcEEEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhc
Q 005511 168 R--GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYIS 245 (693)
Q Consensus 168 ~--~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 245 (693)
. ....+|++++.+. .+.+.+.+|+..+.|++|+.+++..+++..+.+ .++.++++++..++..+.+.+
T Consensus 151 ~~~~~~~~Il~~~~~~-----~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~----~~~~~~~~al~~l~~~~~gdl- 220 (337)
T PRK12402 151 QYSRTCRFIIATRQPS-----KLIPPIRSRCLPLFFRAPTDDELVDVLESIAEA----EGVDYDDDGLELIAYYAGGDL- 220 (337)
T ss_pred hccCCCeEEEEeCChh-----hCchhhcCCceEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH-
Confidence 3 3356677766544 467889999999999999999999999987764 567899999999999886543
Q ss_pred ccCCchhhhhHHHHH
Q 005511 246 DRFLPDKAIDLIDEA 260 (693)
Q Consensus 246 ~~~~~~~~~~ll~~a 260 (693)
+.+...++.+
T Consensus 221 -----r~l~~~l~~~ 230 (337)
T PRK12402 221 -----RKAILTLQTA 230 (337)
T ss_pred -----HHHHHHHHHH
Confidence 5566666543
No 142
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.74 E-value=4.6e-17 Score=169.75 Aligned_cols=187 Identities=17% Similarity=0.216 Sum_probs=138.2
Q ss_pred HhhhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCCCCeEE-ECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEecc
Q 005511 29 GTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCL-IGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMG 107 (693)
Q Consensus 29 ~~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~~~vLl-~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 107 (693)
...|.++|||.+|++++|++...+.+..++.....++++| +||||+|||++++++++.+ +.+++.++++
T Consensus 8 ~~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~----------~~~~~~i~~~ 77 (316)
T PHA02544 8 EFMWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV----------GAEVLFVNGS 77 (316)
T ss_pred CCcceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh----------CccceEeccC
Confidence 3579999999999999999999999999998776667766 8999999999999999987 4556777765
Q ss_pred ccccCCcccchHHHHHHHHHHHHH-hCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC--CCcEEEEEechHHHHh
Q 005511 108 LLVAGTKYRGEFEERLKKLMEEIK-QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--GELQCIGATTLDEYRK 184 (693)
Q Consensus 108 ~l~~~~~~~g~~~~~l~~~~~~~~-~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~~t~~~~~~~ 184 (693)
. . . .......+........ ...+.+++|||+|.+.. .+..+.|...++. ..+.+|+++|...
T Consensus 78 ~-~--~--~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~-------~~~~~~L~~~le~~~~~~~~Ilt~n~~~--- 142 (316)
T PHA02544 78 D-C--R--IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL-------ADAQRHLRSFMEAYSKNCSFIITANNKN--- 142 (316)
T ss_pred c-c--c--HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC-------HHHHHHHHHHHHhcCCCceEEEEcCChh---
Confidence 4 1 1 1111122222222211 13467999999998721 2245667776763 5678888888765
Q ss_pred hhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHh---hhcCcccChHHHHHHHHhhhh
Q 005511 185 HIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYE---IHHKLRYTDEALVSAAQLSYQ 242 (693)
Q Consensus 185 ~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~---~~~~~~~~~~~l~~l~~~~~~ 242 (693)
.+.+++++||..+.|+.|+.+++..+++.+..+.. ...+..++++++..++..+.+
T Consensus 143 --~l~~~l~sR~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~ 201 (316)
T PHA02544 143 --GIIEPLRSRCRVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFP 201 (316)
T ss_pred --hchHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC
Confidence 68899999999999999999999988887655432 235778889888888876544
No 143
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.74 E-value=3.8e-17 Score=173.27 Aligned_cols=201 Identities=22% Similarity=0.310 Sum_probs=139.8
Q ss_pred hccccChHHHHHHHHHHHHHHh--------hcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeecccccc
Q 005511 375 HKRVIGQDEAVKAISRAIRRAR--------VGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFM 446 (693)
Q Consensus 375 ~~~v~g~~~~~~~l~~~~~~~~--------~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~ 446 (693)
+.++.|.+..++.+...+.... .|... ..++||+||||||||++|+++|+.+ +.+|+.++++++.
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~----p~gvLL~GppGtGKT~lAkaia~~~---~~~~i~v~~~~l~ 202 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEP----PKGVLLYGPPGTGKTLLAKAVAHET---NATFIRVVGSELV 202 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCC----CCceEEECCCCCChHHHHHHHHHHh---CCCEEEeehHHHh
Confidence 4567888888888888775432 22222 2369999999999999999999997 6789999888765
Q ss_pred chhhhhhhcCCCCCCcCcCcc--chhhHHHHcCCCEEEEEccCccc-----------CHHHHHHHHHHhhcceeeCCCCC
Q 005511 447 ERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKA-----------HPDVFNMMLQILEDGRLTDSKGR 513 (693)
Q Consensus 447 ~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~l-----------~~~~~~~Ll~~le~~~~~~~~~~ 513 (693)
.. |+|..+. +.++..++...++||||||+|.+ ++.++..+++++..-.-.
T Consensus 203 ~~------------~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~----- 265 (389)
T PRK03992 203 QK------------FIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGF----- 265 (389)
T ss_pred Hh------------hccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhcccc-----
Confidence 33 5565443 55677777777899999999998 345666666666431100
Q ss_pred eeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhh--ccCcEEEcCCCCHHHHH
Q 005511 514 TVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLN--RLDEMIVFRQLTKLEVK 591 (693)
Q Consensus 514 ~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~--R~~~~v~f~~l~~~~~~ 591 (693)
....++++|+|||.... +++++++ |||..+.|++|+.++..
T Consensus 266 -~~~~~v~VI~aTn~~~~------------------------------------ld~allRpgRfd~~I~v~~P~~~~R~ 308 (389)
T PRK03992 266 -DPRGNVKIIAATNRIDI------------------------------------LDPAILRPGRFDRIIEVPLPDEEGRL 308 (389)
T ss_pred -CCCCCEEEEEecCChhh------------------------------------CCHHHcCCccCceEEEECCCCHHHHH
Confidence 02347889999996543 7888885 99999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHHHHHHHH
Q 005511 592 EIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSM 648 (693)
Q Consensus 592 ~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~~~l 648 (693)
+|++.++... ...-.++ ...|+. ....+..++++..+..+...++
T Consensus 309 ~Il~~~~~~~-------~~~~~~~---~~~la~--~t~g~sgadl~~l~~eA~~~a~ 353 (389)
T PRK03992 309 EILKIHTRKM-------NLADDVD---LEELAE--LTEGASGADLKAICTEAGMFAI 353 (389)
T ss_pred HHHHHHhccC-------CCCCcCC---HHHHHH--HcCCCCHHHHHHHHHHHHHHHH
Confidence 9998665421 1111122 344555 3345667788877776655443
No 144
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=5e-17 Score=180.05 Aligned_cols=204 Identities=20% Similarity=0.215 Sum_probs=155.7
Q ss_pred hhhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCCCCe-EEECCCCChHHHHHHHHHHHHhcCCCCC--------------
Q 005511 30 TNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNP-CLIGEPGVGKTAIAEGLAQRIASGDVPD-------------- 94 (693)
Q Consensus 30 ~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~~~v-Ll~Gp~GtGKT~la~~la~~l~~~~~~~-------------- 94 (693)
.-|.++|||.+|++++|++.+++.|...+.....+|. ||+||+|+|||++|+.+|+.+.+.....
T Consensus 4 ~~l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~ 83 (576)
T PRK14965 4 LVLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEIT 83 (576)
T ss_pred HHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHh
Confidence 3578999999999999999999999999988776664 8999999999999999999997632110
Q ss_pred CCCCceEEEEeccccccCCcccchHHHHHHHHHHHHH----hCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC--
Q 005511 95 TIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR-- 168 (693)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~----~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~-- 168 (693)
......++.++.... .....++.+...+. .....|++|||+|.|. ...++.|++.|+.
T Consensus 84 ~g~~~d~~eid~~s~--------~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt--------~~a~naLLk~LEepp 147 (576)
T PRK14965 84 EGRSVDVFEIDGASN--------TGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS--------TNAFNALLKTLEEPP 147 (576)
T ss_pred cCCCCCeeeeeccCc--------cCHHHHHHHHHHHHhccccCCceEEEEEChhhCC--------HHHHHHHHHHHHcCC
Confidence 011223444443211 11233455555443 2345699999999994 3478899999985
Q ss_pred CCcEEEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccC
Q 005511 169 GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRF 248 (693)
Q Consensus 169 ~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 248 (693)
..+++|++|+.+. .+.+.+++||..++|..++.++....+...+++ .++.++++++..+++.+.|.+
T Consensus 148 ~~~~fIl~t~~~~-----kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~----egi~i~~~al~~la~~a~G~l---- 214 (576)
T PRK14965 148 PHVKFIFATTEPH-----KVPITILSRCQRFDFRRIPLQKIVDRLRYIADQ----EGISISDAALALVARKGDGSM---- 214 (576)
T ss_pred CCeEEEEEeCChh-----hhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCCH----
Confidence 4678888888775 688999999999999999999998888877764 678899999999999998764
Q ss_pred CchhhhhHHHHHhhHH
Q 005511 249 LPDKAIDLIDEAGSRV 264 (693)
Q Consensus 249 ~~~~~~~ll~~a~~~~ 264 (693)
++++.+++.+.+..
T Consensus 215 --r~al~~Ldqliay~ 228 (576)
T PRK14965 215 --RDSLSTLDQVLAFC 228 (576)
T ss_pred --HHHHHHHHHHHHhc
Confidence 78888888776543
No 145
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.74 E-value=2e-15 Score=169.54 Aligned_cols=199 Identities=13% Similarity=0.110 Sum_probs=129.5
Q ss_pred CCCCCCCCccHHHHHhhhhhhhhcCCCCC---ccCCHHHHHHHHHHHhc--CCCCCeEEECCCCChHHHHHHHHHHHHhc
Q 005511 15 GGSSGNKMPTLEEYGTNLTKLAEEGKLDP---VVGRQPQIERVVQILGR--RTKNNPCLIGEPGVGKTAIAEGLAQRIAS 89 (693)
Q Consensus 15 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~---iiG~~~~~~~l~~~l~~--~~~~~vLl~Gp~GtGKT~la~~la~~l~~ 89 (693)
+-.+..+.+.--.||+=|...-. -++++ .|--.-+-+.+.+..+. ...-++|+.||+.+|||+.+..+|+..
T Consensus 836 kq~p~~p~~~yi~f~hyw~~~g~-~~veeq~hyIiTPfVqkn~ln~~Ra~s~~~fP~LiQGpTSSGKTSMI~yla~~t-- 912 (4600)
T COG5271 836 KQKPKVPDHSYIAFCHYWKHGGS-FPVEEQEHYIITPFVQKNYLNTMRAASLSNFPLLIQGPTSSGKTSMILYLARET-- 912 (4600)
T ss_pred hcCCCCCCccHHHHHHHHHhcCC-CchhhcceeEecHHHHHHHHHHHHHHhhcCCcEEEecCCCCCcchHHHHHHHHh--
Confidence 34456666777788888876621 11111 11111222223333222 334578999999999999999999998
Q ss_pred CCCCCCCCCceEEEEeccccccC--------CcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHH
Q 005511 90 GDVPDTIEGKKVITLDMGLLVAG--------TKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANI 161 (693)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~ 161 (693)
+.+++.++-..-..- +...|....+-..++..++++. ++++||++... .+++.+
T Consensus 913 --------ghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~Gy--WIVLDELNLAp--------TDVLEa 974 (4600)
T COG5271 913 --------GHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRGY--WIVLDELNLAP--------TDVLEA 974 (4600)
T ss_pred --------CccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcCc--EEEeeccccCc--------HHHHHH
Confidence 778888875332211 2223433344445666667666 99999998653 458888
Q ss_pred HhhhhcC----------------CCcEEEEEechHH-HHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhc
Q 005511 162 LKPSLAR----------------GELQCIGATTLDE-YRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHH 224 (693)
Q Consensus 162 L~~~l~~----------------~~v~vI~~t~~~~-~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~ 224 (693)
|+++++. ..+.+.++-|+|. |.++..++.+++.||-.+.|..-+.+|+..||+.
T Consensus 975 LNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRFlE~hFddipedEle~ILh~--------- 1045 (4600)
T COG5271 975 LNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRFLEMHFDDIPEDELEEILHG--------- 1045 (4600)
T ss_pred HHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhhHhhhcccCcHHHHHHHHhc---------
Confidence 9888863 2356677777653 4455568999999999999999999999999983
Q ss_pred CcccChHHHHHHHHhhhhh
Q 005511 225 KLRYTDEALVSAAQLSYQY 243 (693)
Q Consensus 225 ~~~~~~~~l~~l~~~~~~~ 243 (693)
+..+.+.-...+++...+.
T Consensus 1046 rc~iapSyakKiVeVyr~L 1064 (4600)
T COG5271 1046 RCEIAPSYAKKIVEVYRGL 1064 (4600)
T ss_pred cCccCHHHHHHHHHHHHHh
Confidence 3455666555555554443
No 146
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.73 E-value=7.7e-17 Score=169.71 Aligned_cols=198 Identities=22% Similarity=0.317 Sum_probs=136.6
Q ss_pred hccccChHHHHHHHHHHHHHHh--------hcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeecccccc
Q 005511 375 HKRVIGQDEAVKAISRAIRRAR--------VGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFM 446 (693)
Q Consensus 375 ~~~v~g~~~~~~~l~~~~~~~~--------~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~ 446 (693)
+.+|.|.+..++.+.+.+.... .|..+ ..++||+||||||||++|+++|+.+ +.+|+.+.++++.
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~----pkgvLL~GppGTGKT~LAkalA~~l---~~~fi~i~~s~l~ 216 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDP----PRGVLLYGPPGTGKTMLAKAVAHHT---TATFIRVVGSEFV 216 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCC----CceEEEECCCCCCHHHHHHHHHHhc---CCCEEEEehHHHH
Confidence 4567888888888888776432 22222 2369999999999999999999997 6788888776654
Q ss_pred chhhhhhhcCCCCCCcCcCcc--chhhHHHHcCCCEEEEEccCcccC-----------HHHH---HHHHHHhhcceeeCC
Q 005511 447 ERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKAH-----------PDVF---NMMLQILEDGRLTDS 510 (693)
Q Consensus 447 ~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~l~-----------~~~~---~~Ll~~le~~~~~~~ 510 (693)
.. |+|..+. +.++..++...++||||||+|.+. ..++ ..|+..+++..
T Consensus 217 ~k------------~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~---- 280 (398)
T PTZ00454 217 QK------------YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFD---- 280 (398)
T ss_pred HH------------hcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccC----
Confidence 33 5565443 556777777888999999999872 2333 34444454311
Q ss_pred CCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhh--ccCcEEEcCCCCHH
Q 005511 511 KGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLN--RLDEMIVFRQLTKL 588 (693)
Q Consensus 511 ~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~--R~~~~v~f~~l~~~ 588 (693)
...++++|++||.... ++|++++ |||..|.|++|+.+
T Consensus 281 -----~~~~v~VI~aTN~~d~------------------------------------LDpAllR~GRfd~~I~~~~P~~~ 319 (398)
T PTZ00454 281 -----QTTNVKVIMATNRADT------------------------------------LDPALLRPGRLDRKIEFPLPDRR 319 (398)
T ss_pred -----CCCCEEEEEecCCchh------------------------------------CCHHHcCCCcccEEEEeCCcCHH
Confidence 1236789999996554 8899885 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHHHHHHHH
Q 005511 589 EVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSM 648 (693)
Q Consensus 589 ~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~~~l 648 (693)
+..+|++.++... +..-.++ ...++. ....+..+++++.+..+...++
T Consensus 320 ~R~~Il~~~~~~~-------~l~~dvd---~~~la~--~t~g~sgaDI~~l~~eA~~~A~ 367 (398)
T PTZ00454 320 QKRLIFQTITSKM-------NLSEEVD---LEDFVS--RPEKISAADIAAICQEAGMQAV 367 (398)
T ss_pred HHHHHHHHHHhcC-------CCCcccC---HHHHHH--HcCCCCHHHHHHHHHHHHHHHH
Confidence 9999998766431 2221122 334444 2344666778777776655444
No 147
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.7e-17 Score=159.49 Aligned_cols=185 Identities=25% Similarity=0.367 Sum_probs=146.9
Q ss_pred hcCCCCCccCCHHHHHHHHHHH-------------hcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEE
Q 005511 37 EEGKLDPVVGRQPQIERVVQIL-------------GRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVIT 103 (693)
Q Consensus 37 ~~~~~~~iiG~~~~~~~l~~~l-------------~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 103 (693)
+.-+|+.+-|.-.+++.+++.+ ...+|..++||||||+|||.+|+++|..+ +..++.
T Consensus 127 ~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~m----------g~nfl~ 196 (388)
T KOG0651|consen 127 RNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATM----------GVNFLK 196 (388)
T ss_pred cccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhc----------CCceEE
Confidence 3448899999999999888854 33667899999999999999999999999 788888
Q ss_pred EeccccccCCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCC---hHhHHHHHhhhhc-------CCCcEE
Q 005511 104 LDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEG---AIDAANILKPSLA-------RGELQC 173 (693)
Q Consensus 104 ~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~---~~~~~~~L~~~l~-------~~~v~v 173 (693)
+..+.+. .++.|+....+++.|..|+...||++||||+|.......+++ .+.++..|..++. -+++.+
T Consensus 197 v~ss~lv--~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ 274 (388)
T KOG0651|consen 197 VVSSALV--DKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKT 274 (388)
T ss_pred eeHhhhh--hhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccE
Confidence 8888887 667899999999999999999999999999999876543333 3455666655553 467999
Q ss_pred EEEechHHHHhhhhcCHHHhc--cCC-ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhh
Q 005511 174 IGATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQY 243 (693)
Q Consensus 174 I~~t~~~~~~~~~~l~~~l~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 243 (693)
|.|||.++ .++|+|+| |++ .+.+|.|+...|..|++........+- .+. .+.+.++++++
T Consensus 275 ImatNrpd-----tLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~G--eid---~eaivK~~d~f 337 (388)
T KOG0651|consen 275 IMATNRPD-----TLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHG--EID---DEAILKLVDGF 337 (388)
T ss_pred EEecCCcc-----ccchhhcCCccccceeccCCcchhhceeeEeeccccccccc--ccc---HHHHHHHHhcc
Confidence 99999998 79999999 898 899999999999998886544332222 223 34455666555
No 148
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=1.2e-16 Score=172.62 Aligned_cols=202 Identities=22% Similarity=0.283 Sum_probs=150.6
Q ss_pred hhhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCCCCe-EEECCCCChHHHHHHHHHHHHhcCCCCC--------------
Q 005511 30 TNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNP-CLIGEPGVGKTAIAEGLAQRIASGDVPD-------------- 94 (693)
Q Consensus 30 ~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~~~v-Ll~Gp~GtGKT~la~~la~~l~~~~~~~-------------- 94 (693)
.+|.+++||.+|++++|++..++.|...+.....+|+ ||+||+|+|||++|+.+|+.+.+.....
T Consensus 4 ~~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~ 83 (486)
T PRK14953 4 IPFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEID 83 (486)
T ss_pred hHHHHhhCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHh
Confidence 3899999999999999999999999999998777775 6899999999999999999997522111
Q ss_pred CCCCceEEEEeccccccCCcccchHHHHHHHHHHHHH----hCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCC-
Q 005511 95 TIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG- 169 (693)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~----~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~- 169 (693)
......++.++.+. ..| ...++.+...+. .+...|++|||+|.|.. ...+.|+..++..
T Consensus 84 ~g~~~d~~eidaas------~~g--vd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~--------~a~naLLk~LEepp 147 (486)
T PRK14953 84 KGSFPDLIEIDAAS------NRG--IDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK--------EAFNALLKTLEEPP 147 (486)
T ss_pred cCCCCcEEEEeCcc------CCC--HHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH--------HHHHHHHHHHhcCC
Confidence 00112344443311 111 122344444433 23467999999999843 3677888888753
Q ss_pred -CcEEEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccC
Q 005511 170 -ELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRF 248 (693)
Q Consensus 170 -~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 248 (693)
.+++|++|+... .+.+++.+|+..+.|++++.+++..+++..+++ .++.++++++..++..+.|.+
T Consensus 148 ~~~v~Il~tt~~~-----kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~----egi~id~~al~~La~~s~G~l---- 214 (486)
T PRK14953 148 PRTIFILCTTEYD-----KIPPTILSRCQRFIFSKPTKEQIKEYLKRICNE----EKIEYEEKALDLLAQASEGGM---- 214 (486)
T ss_pred CCeEEEEEECCHH-----HHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH----
Confidence 567777776654 567899999999999999999999999988774 567889999999999887653
Q ss_pred CchhhhhHHHHHhh
Q 005511 249 LPDKAIDLIDEAGS 262 (693)
Q Consensus 249 ~~~~~~~ll~~a~~ 262 (693)
+.+..+++.++.
T Consensus 215 --r~al~~Ldkl~~ 226 (486)
T PRK14953 215 --RDAASLLDQAST 226 (486)
T ss_pred --HHHHHHHHHHHH
Confidence 788888887754
No 149
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.73 E-value=3.8e-16 Score=167.90 Aligned_cols=201 Identities=20% Similarity=0.226 Sum_probs=148.6
Q ss_pred hhhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCCCC-eEEECCCCChHHHHHHHHHHHHhcCCCCCC-------------
Q 005511 30 TNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDVPDT------------- 95 (693)
Q Consensus 30 ~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~~~-vLl~Gp~GtGKT~la~~la~~l~~~~~~~~------------- 95 (693)
..|+++|||.+|++++|++..++.|...+.....++ +||+||+|+|||++|+.+|+.+.+......
T Consensus 5 ~~~~~kyRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i 84 (451)
T PRK06305 5 QVSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEI 84 (451)
T ss_pred HHHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHH
Confidence 468999999999999999999999999998766555 789999999999999999999976321100
Q ss_pred --CCCceEEEEeccccccCCcccchHHHHHHHHHHHH----HhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC-
Q 005511 96 --IEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEI----KQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR- 168 (693)
Q Consensus 96 --~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~----~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~- 168 (693)
.....++.++... ..| ...++.+...+ ......|++|||+|.+.. ..++.|++.++.
T Consensus 85 ~~~~~~d~~~i~g~~------~~g--id~ir~i~~~l~~~~~~~~~kvvIIdead~lt~--------~~~n~LLk~lEep 148 (451)
T PRK06305 85 SSGTSLDVLEIDGAS------HRG--IEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK--------EAFNSLLKTLEEP 148 (451)
T ss_pred hcCCCCceEEeeccc------cCC--HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH--------HHHHHHHHHhhcC
Confidence 0112344443211 111 12232222222 224567999999999943 367888888885
Q ss_pred -CCcEEEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhccc
Q 005511 169 -GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDR 247 (693)
Q Consensus 169 -~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 247 (693)
+.+.+|++|+... .+.+++++|+..++|+.++.++....+...+++ .++.++++++..++..+.|.+
T Consensus 149 ~~~~~~Il~t~~~~-----kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~----eg~~i~~~al~~L~~~s~gdl--- 216 (451)
T PRK06305 149 PQHVKFFLATTEIH-----KIPGTILSRCQKMHLKRIPEETIIDKLALIAKQ----EGIETSREALLPIARAAQGSL--- 216 (451)
T ss_pred CCCceEEEEeCChH-----hcchHHHHhceEEeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH---
Confidence 4677888887664 688999999999999999999999988877663 577899999999999987754
Q ss_pred CCchhhhhHHHHHh
Q 005511 248 FLPDKAIDLIDEAG 261 (693)
Q Consensus 248 ~~~~~~~~ll~~a~ 261 (693)
+.+...++...
T Consensus 217 ---r~a~~~Lekl~ 227 (451)
T PRK06305 217 ---RDAESLYDYVV 227 (451)
T ss_pred ---HHHHHHHHHHH
Confidence 67777777654
No 150
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2e-17 Score=153.83 Aligned_cols=166 Identities=27% Similarity=0.427 Sum_probs=129.3
Q ss_pred HHhccccChHHHHHHHHHHHHHHh--------hcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeecccc
Q 005511 373 TLHKRVIGQDEAVKAISRAIRRAR--------VGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSE 444 (693)
Q Consensus 373 ~l~~~v~g~~~~~~~l~~~~~~~~--------~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~ 444 (693)
.-.+-+-|.+..++.+++.+.... .|+. .|++ +||+||||||||.+|+++|... ...|+++..++
T Consensus 144 StYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIa---QPKG-vlLygppgtGktLlaraVahht---~c~firvsgse 216 (404)
T KOG0728|consen 144 STYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA---QPKG-VLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSE 216 (404)
T ss_pred cHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCC---CCcc-eEEecCCCCchhHHHHHHHhhc---ceEEEEechHH
Confidence 344567788888888888886432 2332 4455 9999999999999999999986 77899999998
Q ss_pred ccchhhhhhhcCCCCCCcCcCcc--chhhHHHHcCCCEEEEEccCccc-----------CHHHHHHHHHHhhcceeeCCC
Q 005511 445 FMERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKA-----------HPDVFNMMLQILEDGRLTDSK 511 (693)
Q Consensus 445 ~~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~l-----------~~~~~~~Ll~~le~~~~~~~~ 511 (693)
+..+ |+|+..+ +.+|-.++...++|+|.||||++ +.++|..+|.++..- +
T Consensus 217 lvqk------------~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnql-----d 279 (404)
T KOG0728|consen 217 LVQK------------YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQL-----D 279 (404)
T ss_pred HHHH------------HhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhc-----c
Confidence 8866 7776554 77888899999999999999998 456888887777431 0
Q ss_pred CCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHh--hccCcEEEcCCCCHHH
Q 005511 512 GRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFL--NRLDEMIVFRQLTKLE 589 (693)
Q Consensus 512 ~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~--~R~~~~v~f~~l~~~~ 589 (693)
| --...|+-+|++||.-+- ++|+|+ +|+|..|.|+|++.+.
T Consensus 280 g-featknikvimatnridi------------------------------------ld~allrpgridrkiefp~p~e~a 322 (404)
T KOG0728|consen 280 G-FEATKNIKVIMATNRIDI------------------------------------LDPALLRPGRIDRKIEFPPPNEEA 322 (404)
T ss_pred c-cccccceEEEEecccccc------------------------------------ccHhhcCCCcccccccCCCCCHHH
Confidence 0 113468899999995442 789998 7999999999999999
Q ss_pred HHHHHHHHHH
Q 005511 590 VKEIADIMLK 599 (693)
Q Consensus 590 ~~~i~~~~l~ 599 (693)
..+|++..-.
T Consensus 323 r~~ilkihsr 332 (404)
T KOG0728|consen 323 RLDILKIHSR 332 (404)
T ss_pred HHHHHHHhhh
Confidence 9999865543
No 151
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.73 E-value=1.4e-16 Score=174.77 Aligned_cols=202 Identities=24% Similarity=0.247 Sum_probs=151.4
Q ss_pred hhhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCCCC-eEEECCCCChHHHHHHHHHHHHhcCCCCC--------------
Q 005511 30 TNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDVPD-------------- 94 (693)
Q Consensus 30 ~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~~~-vLl~Gp~GtGKT~la~~la~~l~~~~~~~-------------- 94 (693)
.-|..++||.+|++++||+..++.|...+.....+| +||+||+|+|||++|+++|+.+.+...+.
T Consensus 4 ~~l~~kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~ 83 (563)
T PRK06647 4 RGTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSID 83 (563)
T ss_pred HHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHH
Confidence 357889999999999999999999999998876666 78999999999999999999997642211
Q ss_pred CCCCceEEEEeccccccCCcccchHHHHHHHHHHHHH----hCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC--
Q 005511 95 TIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR-- 168 (693)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~----~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~-- 168 (693)
...+..++.++... . .....++.+...+. .+...|++|||+|.|. ...++.|++.++.
T Consensus 84 ~~~~~dv~~idgas------~--~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls--------~~a~naLLK~LEepp 147 (563)
T PRK06647 84 NDNSLDVIEIDGAS------N--TSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS--------NSAFNALLKTIEEPP 147 (563)
T ss_pred cCCCCCeEEecCcc------c--CCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC--------HHHHHHHHHhhccCC
Confidence 01122334343211 0 11223444443332 3456799999999994 3367888888985
Q ss_pred CCcEEEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccC
Q 005511 169 GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRF 248 (693)
Q Consensus 169 ~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 248 (693)
..+.+|++|+.+. .+.+++++|+..++|..++.++..+.++..+.. .++.++++++..++..+.|.+
T Consensus 148 ~~~vfI~~tte~~-----kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~----egi~id~eAl~lLa~~s~Gdl---- 214 (563)
T PRK06647 148 PYIVFIFATTEVH-----KLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLE----DQIKYEDEALKWIAYKSTGSV---- 214 (563)
T ss_pred CCEEEEEecCChH-----HhHHHHHHhceEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH----
Confidence 5677788877654 578999999999999999999999998877764 578899999999999887753
Q ss_pred CchhhhhHHHHHhh
Q 005511 249 LPDKAIDLIDEAGS 262 (693)
Q Consensus 249 ~~~~~~~ll~~a~~ 262 (693)
+.+..+++.++.
T Consensus 215 --R~alslLdklis 226 (563)
T PRK06647 215 --RDAYTLFDQVVS 226 (563)
T ss_pred --HHHHHHHHHHHh
Confidence 788888877654
No 152
>PRK04132 replication factor C small subunit; Provisional
Probab=99.72 E-value=1.8e-15 Score=170.41 Aligned_cols=146 Identities=19% Similarity=0.272 Sum_probs=112.6
Q ss_pred EEEEec--cCCCcHHHHHHHHHHHhcCC--CcceeeeccccccchhhhhhhcCCCCCCcCcCccchhhHHHHc-----CC
Q 005511 408 SFIFSG--PTGVGKSELAKALAAYYFGS--EEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRR-----RP 478 (693)
Q Consensus 408 ~iLl~G--p~GtGKt~lA~~la~~l~~~--~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~-----~~ 478 (693)
+-+..| |++.||||+|++||+.+++. +.+++.+|.++..+.+.+..++. .++.. .+
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk---------------~~a~~~~~~~~~ 630 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVK---------------EFARTKPIGGAS 630 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHH---------------HHHhcCCcCCCC
Confidence 456778 99999999999999999775 45789999987644333332221 11111 13
Q ss_pred CEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHH
Q 005511 479 YTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKS 558 (693)
Q Consensus 479 ~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~ 558 (693)
..|+||||+|+++...|++|++.||+ +..++.||++||....
T Consensus 631 ~KVvIIDEaD~Lt~~AQnALLk~lEe-----------p~~~~~FILi~N~~~k--------------------------- 672 (846)
T PRK04132 631 FKIIFLDEADALTQDAQQALRRTMEM-----------FSSNVRFILSCNYSSK--------------------------- 672 (846)
T ss_pred CEEEEEECcccCCHHHHHHHHHHhhC-----------CCCCeEEEEEeCChhh---------------------------
Confidence 47999999999999999999999998 3457889999996654
Q ss_pred HHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHh
Q 005511 559 LVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEE 625 (693)
Q Consensus 559 ~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~ 625 (693)
+.+++.+|| ..+.|.+++.+++.+.+...+.+. + +.++++++..++..
T Consensus 673 ---------Ii~tIrSRC-~~i~F~~ls~~~i~~~L~~I~~~E-------g--i~i~~e~L~~Ia~~ 720 (846)
T PRK04132 673 ---------IIEPIQSRC-AIFRFRPLRDEDIAKRLRYIAENE-------G--LELTEEGLQAILYI 720 (846)
T ss_pred ---------CchHHhhhc-eEEeCCCCCHHHHHHHHHHHHHhc-------C--CCCCHHHHHHHHHH
Confidence 668999999 999999999999998887665421 3 34788899888873
No 153
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.72 E-value=3.8e-17 Score=179.51 Aligned_cols=191 Identities=19% Similarity=0.302 Sum_probs=132.2
Q ss_pred HHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCC----cceeeec-cc
Q 005511 369 KMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE----EAMIRLD-MS 443 (693)
Q Consensus 369 ~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~----~~~~~~~-~~ 443 (693)
+++...+.+++||+.+++.|.+.+...+. .+.+||+||+|||||++|+++|+.+++.. .++..+. |.
T Consensus 9 KyRP~~f~divGQe~vv~~L~~~l~~~rl--------~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~ 80 (647)
T PRK07994 9 KWRPQTFAEVVGQEHVLTALANALDLGRL--------HHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCR 80 (647)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHH
Confidence 45556688999999999999888876432 13479999999999999999999996532 1222211 00
Q ss_pred cccchhhhhhhcC-CCCCCcCcCccchhhHHHHc----CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecC
Q 005511 444 EFMERHTVSKLIG-SPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFK 518 (693)
Q Consensus 444 ~~~~~~~~~~l~g-~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~ 518 (693)
.+. .....+++- ......+..+.+.+.+.+.. +.+.|+||||+|+++...+|.||+.||+ +..
T Consensus 81 ~i~-~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEE-----------Pp~ 148 (647)
T PRK07994 81 EIE-QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE-----------PPE 148 (647)
T ss_pred HHH-cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHc-----------CCC
Confidence 010 000001110 00112233333444444432 3467999999999999999999999998 456
Q ss_pred CeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHHH
Q 005511 519 NTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIML 598 (693)
Q Consensus 519 ~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l 598 (693)
+++||++|+.... +.+.+++|| ..+.|.+++.+++.+.+...+
T Consensus 149 ~v~FIL~Tt~~~k------------------------------------Ll~TI~SRC-~~~~f~~Ls~~ei~~~L~~il 191 (647)
T PRK07994 149 HVKFLLATTDPQK------------------------------------LPVTILSRC-LQFHLKALDVEQIRQQLEHIL 191 (647)
T ss_pred CeEEEEecCCccc------------------------------------cchHHHhhh-eEeeCCCCCHHHHHHHHHHHH
Confidence 7888888875443 678999999 999999999999998887776
Q ss_pred HHHHHHHhcCCCeEEeCHHHHHHHHHh
Q 005511 599 KEVFDRLKTKDIELQVTERFRERVVEE 625 (693)
Q Consensus 599 ~~~~~~~~~~~~~l~~~~~~~~~l~~~ 625 (693)
... + +.++++++..|+..
T Consensus 192 ~~e-------~--i~~e~~aL~~Ia~~ 209 (647)
T PRK07994 192 QAE-------Q--IPFEPRALQLLARA 209 (647)
T ss_pred HHc-------C--CCCCHHHHHHHHHH
Confidence 532 3 34788888888863
No 154
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.7e-17 Score=158.12 Aligned_cols=203 Identities=18% Similarity=0.264 Sum_probs=143.3
Q ss_pred hccccChHHHHHHHHHHHHHHhh---cCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhh
Q 005511 375 HKRVIGQDEAVKAISRAIRRARV---GLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTV 451 (693)
Q Consensus 375 ~~~v~g~~~~~~~l~~~~~~~~~---~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~ 451 (693)
|.+|-|.+.+++.|++++..... -....++|..++||+|||||||+.||+++|.+. +..|+.+.-++++++
T Consensus 132 WsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA---nSTFFSvSSSDLvSK--- 205 (439)
T KOG0739|consen 132 WSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDLVSK--- 205 (439)
T ss_pred hhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc---CCceEEeehHHHHHH---
Confidence 45567777888888777643311 012234677789999999999999999999986 678888888888765
Q ss_pred hhhcCCCCCCcCcCcc--chhhHHHHcCCCEEEEEccCcccC-----------HHHHHHHHHHhhcceeeCCCCCeeecC
Q 005511 452 SKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKAH-----------PDVFNMMLQILEDGRLTDSKGRTVDFK 518 (693)
Q Consensus 452 ~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~l~-----------~~~~~~Ll~~le~~~~~~~~~~~~~~~ 518 (693)
|.|++++ ..||+.++...++||||||||.+. ..+-..||-.|++ . -.+..
T Consensus 206 ---------WmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqG-V-------G~d~~ 268 (439)
T KOG0739|consen 206 ---------WMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQG-V-------GNDND 268 (439)
T ss_pred ---------HhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhc-c-------ccCCC
Confidence 9999987 889999999999999999999882 2355566666653 1 12344
Q ss_pred CeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHHH
Q 005511 519 NTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIML 598 (693)
Q Consensus 519 ~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l 598 (693)
.++++.+||.+-. ++.++++||+..|+.+.+.......+++..+
T Consensus 269 gvLVLgATNiPw~------------------------------------LDsAIRRRFekRIYIPLPe~~AR~~MF~lhl 312 (439)
T KOG0739|consen 269 GVLVLGATNIPWV------------------------------------LDSAIRRRFEKRIYIPLPEAHARARMFKLHL 312 (439)
T ss_pred ceEEEecCCCchh------------------------------------HHHHHHHHhhcceeccCCcHHHhhhhheecc
Confidence 6778888886553 7899999998889998888777766665443
Q ss_pred HHHHHHHhcCCCe-EEeCHHHHHHHHHhccCCCCCcchHHHHHHHHHHHHH
Q 005511 599 KEVFDRLKTKDIE-LQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSM 648 (693)
Q Consensus 599 ~~~~~~~~~~~~~-l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~~~l 648 (693)
|-. -.+++.-+.+|... ...|...++.=++...+..++
T Consensus 313 ----------G~tp~~LT~~d~~eL~~k--TeGySGsDisivVrDalmePv 351 (439)
T KOG0739|consen 313 ----------GDTPHVLTEQDFKELARK--TEGYSGSDISIVVRDALMEPV 351 (439)
T ss_pred ----------CCCccccchhhHHHHHhh--cCCCCcCceEEEehhhhhhhH
Confidence 222 23666667777764 222333344445555544443
No 155
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=6.5e-15 Score=162.42 Aligned_cols=202 Identities=19% Similarity=0.203 Sum_probs=149.3
Q ss_pred hhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCCCC-eEEECCCCChHHHHHHHHHHHHhcCCC---C-------------
Q 005511 31 NLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDV---P------------- 93 (693)
Q Consensus 31 ~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~~~-vLl~Gp~GtGKT~la~~la~~l~~~~~---~------------- 93 (693)
-+.++|||.+|++++||+..++.|..++......| +||+||+||||||+|+.+|+.+.+... |
T Consensus 5 ~l~~kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C 84 (620)
T PRK14954 5 VIARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGEC 84 (620)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccC
Confidence 47899999999999999999999999998766666 789999999999999999999977321 0
Q ss_pred ------CCCCCceEEEEeccccccCCcccchHHHHHHHHHHHHH----hCCCeEEEEeccchhhhCCCCCChHhHHHHHh
Q 005511 94 ------DTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILK 163 (693)
Q Consensus 94 ------~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~----~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~ 163 (693)
....+..++.++... .. ....++.+...+. .+...|++|||+|.|.. ..++.|+
T Consensus 85 ~sC~~~~~g~~~n~~~~d~~s------~~--~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~--------~a~naLL 148 (620)
T PRK14954 85 ESCRDFDAGTSLNISEFDAAS------NN--SVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST--------AAFNAFL 148 (620)
T ss_pred HHHHHHhccCCCCeEEecccc------cC--CHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH--------HHHHHHH
Confidence 001112233332211 01 1233444444442 24456999999999943 3678899
Q ss_pred hhhcC--CCcEEEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhh
Q 005511 164 PSLAR--GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSY 241 (693)
Q Consensus 164 ~~l~~--~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 241 (693)
..++. ...++|++|+... .+.+.+.+|+..++|..++.++....+...+.. .++.+++++++.++..+.
T Consensus 149 K~LEePp~~tv~IL~t~~~~-----kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~----egi~I~~eal~~La~~s~ 219 (620)
T PRK14954 149 KTLEEPPPHAIFIFATTELH-----KIPATIASRCQRFNFKRIPLDEIQSQLQMICRA----EGIQIDADALQLIARKAQ 219 (620)
T ss_pred HHHhCCCCCeEEEEEeCChh-----hhhHHHHhhceEEecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhC
Confidence 99986 4567777776554 678899999999999999999988888877663 567899999999999998
Q ss_pred hhhcccCCchhhhhHHHHHhhH
Q 005511 242 QYISDRFLPDKAIDLIDEAGSR 263 (693)
Q Consensus 242 ~~~~~~~~~~~~~~ll~~a~~~ 263 (693)
|.+ +.+...++.....
T Consensus 220 Gdl------r~al~eLeKL~~y 235 (620)
T PRK14954 220 GSM------RDAQSILDQVIAF 235 (620)
T ss_pred CCH------HHHHHHHHHHHHh
Confidence 764 6677777665543
No 156
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.72 E-value=1.3e-16 Score=170.98 Aligned_cols=164 Identities=25% Similarity=0.359 Sum_probs=115.3
Q ss_pred ccccChHHHHHHHHHHHHHHh--------hcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCC-------Ccceeee
Q 005511 376 KRVIGQDEAVKAISRAIRRAR--------VGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGS-------EEAMIRL 440 (693)
Q Consensus 376 ~~v~g~~~~~~~l~~~~~~~~--------~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~-------~~~~~~~ 440 (693)
++|.|.+..++.+...+.... .+..+ ..++||+||||||||++|+++|+.+... ...|+.+
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~----p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v 257 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKP----PKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNI 257 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCC----CcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEec
Confidence 345677777877777765421 22222 2359999999999999999999997321 1123333
Q ss_pred ccccccchhhhhhhcCCCCCCcCcCcc--chhhHHHHc----CCCEEEEEccCcccCH------------HHHHHHHHHh
Q 005511 441 DMSEFMERHTVSKLIGSPPGYVGYTEG--GQLTEAVRR----RPYTVVLFDEIEKAHP------------DVFNMMLQIL 502 (693)
Q Consensus 441 ~~~~~~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~----~~~~vl~iDEid~l~~------------~~~~~Ll~~l 502 (693)
..+++. + .|+|+++. +.+++.++. ..++||||||+|.+.. .+++.||..|
T Consensus 258 ~~~eLl---------~---kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 258 KGPELL---------N---KYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred cchhhc---------c---cccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 333332 2 27776654 455665554 2579999999998732 2567888888
Q ss_pred hcceeeCCCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhh--ccCcEE
Q 005511 503 EDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLN--RLDEMI 580 (693)
Q Consensus 503 e~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~--R~~~~v 580 (693)
++-. ...++++|+|||.... ++|++++ |||..|
T Consensus 326 Dgl~---------~~~~ViVI~ATN~~d~------------------------------------LDpALlRpGRfD~~I 360 (512)
T TIGR03689 326 DGVE---------SLDNVIVIGASNREDM------------------------------------IDPAILRPGRLDVKI 360 (512)
T ss_pred cccc---------cCCceEEEeccCChhh------------------------------------CCHhhcCccccceEE
Confidence 7521 2347889999996554 8999997 999999
Q ss_pred EcCCCCHHHHHHHHHHHHHH
Q 005511 581 VFRQLTKLEVKEIADIMLKE 600 (693)
Q Consensus 581 ~f~~l~~~~~~~i~~~~l~~ 600 (693)
.|++|+.++..+|+..++..
T Consensus 361 ~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 361 RIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred EeCCCCHHHHHHHHHHHhhc
Confidence 99999999999999988753
No 157
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=9e-17 Score=173.54 Aligned_cols=191 Identities=19% Similarity=0.283 Sum_probs=130.0
Q ss_pred HHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCC----cceeeec-cc
Q 005511 369 KMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE----EAMIRLD-MS 443 (693)
Q Consensus 369 ~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~----~~~~~~~-~~ 443 (693)
+++..-+.+++||+.+++.|.+++...+ ..+.+||+||+|||||++|+++|+.+.+.. .+|..+. |.
T Consensus 8 KyRPktFddVIGQe~vv~~L~~aI~~gr--------l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~ 79 (702)
T PRK14960 8 KYRPRNFNELVGQNHVSRALSSALERGR--------LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCK 79 (702)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcCC--------CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHH
Confidence 4555667899999999999988887543 124689999999999999999999985422 1111110 11
Q ss_pred cccchhhhhhhcC-CCCCCcCcCccchhhHHHHc----CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecC
Q 005511 444 EFMERHTVSKLIG-SPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFK 518 (693)
Q Consensus 444 ~~~~~~~~~~l~g-~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~ 518 (693)
.+. .....+++- ..+...+..+.+.+.+.+.. +.+.|+||||+|+++...+|.|++.||+ ...
T Consensus 80 ~I~-~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEE-----------PP~ 147 (702)
T PRK14960 80 AVN-EGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEE-----------PPE 147 (702)
T ss_pred HHh-cCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc-----------CCC
Confidence 110 000001110 00111222222333333322 3457999999999999999999999998 345
Q ss_pred CeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHHH
Q 005511 519 NTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIML 598 (693)
Q Consensus 519 ~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l 598 (693)
++.||++|+.... +.+.+++|| ..+.|.+++.+++.+.+...+
T Consensus 148 ~v~FILaTtd~~k------------------------------------Ip~TIlSRC-q~feFkpLs~eEI~k~L~~Il 190 (702)
T PRK14960 148 HVKFLFATTDPQK------------------------------------LPITVISRC-LQFTLRPLAVDEITKHLGAIL 190 (702)
T ss_pred CcEEEEEECChHh------------------------------------hhHHHHHhh-heeeccCCCHHHHHHHHHHHH
Confidence 6788888874433 567889999 999999999999999888777
Q ss_pred HHHHHHHhcCCCeEEeCHHHHHHHHHh
Q 005511 599 KEVFDRLKTKDIELQVTERFRERVVEE 625 (693)
Q Consensus 599 ~~~~~~~~~~~~~l~~~~~~~~~l~~~ 625 (693)
... | +.++++++.+|++.
T Consensus 191 ~kE-------g--I~id~eAL~~IA~~ 208 (702)
T PRK14960 191 EKE-------Q--IAADQDAIWQIAES 208 (702)
T ss_pred HHc-------C--CCCCHHHHHHHHHH
Confidence 542 3 35889999999874
No 158
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.2e-16 Score=174.20 Aligned_cols=165 Identities=25% Similarity=0.375 Sum_probs=133.6
Q ss_pred HHhccccChHHHHHHHHHHHHHHh-------hcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccc
Q 005511 373 TLHKRVIGQDEAVKAISRAIRRAR-------VGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEF 445 (693)
Q Consensus 373 ~l~~~v~g~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~ 445 (693)
..|++|.|.+++++.|.+.+...+ .|-+. |+ ++||+||||||||.||+++|.+. +.||+.+..+++
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKi---Pk-GvLL~GPPGTGKTLLAKAiAGEA---gVPF~svSGSEF 380 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKI---PK-GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSVSGSEF 380 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcC---cC-ceEEECCCCCcHHHHHHHHhccc---CCceeeechHHH
Confidence 347789999999988888775432 33222 33 59999999999999999999986 999999999999
Q ss_pred cchhhhhhhcCCCCCCcC--cCccchhhHHHHcCCCEEEEEccCcccC---------------HHHHHHHHHHhhcceee
Q 005511 446 MERHTVSKLIGSPPGYVG--YTEGGQLTEAVRRRPYTVVLFDEIEKAH---------------PDVFNMMLQILEDGRLT 508 (693)
Q Consensus 446 ~~~~~~~~l~g~~~~~~g--~~~~~~l~~~~~~~~~~vl~iDEid~l~---------------~~~~~~Ll~~le~~~~~ 508 (693)
++. ++| .+..+.+|..++...++|+|+||||... ...+|+||..||...
T Consensus 381 vE~------------~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~-- 446 (774)
T KOG0731|consen 381 VEM------------FVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE-- 446 (774)
T ss_pred HHH------------hcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCc--
Confidence 865 333 3334889999999999999999999872 237899999998743
Q ss_pred CCCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHh--hccCcEEEcCCCC
Q 005511 509 DSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFL--NRLDEMIVFRQLT 586 (693)
Q Consensus 509 ~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~--~R~~~~v~f~~l~ 586 (693)
...+++++++||..+. ++++|+ +|||..|..+.++
T Consensus 447 -------~~~~vi~~a~tnr~d~------------------------------------ld~allrpGRfdr~i~i~~p~ 483 (774)
T KOG0731|consen 447 -------TSKGVIVLAATNRPDI------------------------------------LDPALLRPGRFDRQIQIDLPD 483 (774)
T ss_pred -------CCCcEEEEeccCCccc------------------------------------cCHHhcCCCccccceeccCCc
Confidence 2257889999996654 789999 8999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 005511 587 KLEVKEIADIMLKEV 601 (693)
Q Consensus 587 ~~~~~~i~~~~l~~~ 601 (693)
.....+|++.++...
T Consensus 484 ~~~r~~i~~~h~~~~ 498 (774)
T KOG0731|consen 484 VKGRASILKVHLRKK 498 (774)
T ss_pred hhhhHHHHHHHhhcc
Confidence 999999998887653
No 159
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=8.7e-17 Score=159.52 Aligned_cols=181 Identities=22% Similarity=0.290 Sum_probs=132.9
Q ss_pred ccHHHHHhhhhhhh----hcC-CCCCccCCHHHHHHHHHHHh--------cCCCCCeEEECCCCChHHHHHHHHHHHHhc
Q 005511 23 PTLEEYGTNLTKLA----EEG-KLDPVVGRQPQIERVVQILG--------RRTKNNPCLIGEPGVGKTAIAEGLAQRIAS 89 (693)
Q Consensus 23 ~~l~~~~~~l~~~~----~~~-~~~~iiG~~~~~~~l~~~l~--------~~~~~~vLl~Gp~GtGKT~la~~la~~l~~ 89 (693)
-.|+.+-+++.-.. +++ .|+++|=+....+++..+.. ..+.+||+||||||||||++|+.+|+..
T Consensus 331 gsls~~k~~i~~~~~~s~~gk~pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~S-- 408 (630)
T KOG0742|consen 331 GSLSALKHPIQGSRSASSRGKDPLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHS-- 408 (630)
T ss_pred ccHHHHhchhhhhHhhhhcCCCCcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhc--
Confidence 34566666663321 222 38888888777777666543 2556899999999999999999999886
Q ss_pred CCCCCCCCCceEEEEeccccccCCcccchHHHHHHHHHHHHHhCC-CeEEEEeccchhhhCCCCCChHhHH-HHHhhhh-
Q 005511 90 GDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSD-EIILFIDEVHTLIGAGAAEGAIDAA-NILKPSL- 166 (693)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~-~~vL~iDEid~l~~~~~~~~~~~~~-~~L~~~l- 166 (693)
|..+-.+..+++ .+.-.+....++.+|++++++. +.+|||||+|.++..++..+-.+.+ ..|+.+|
T Consensus 409 --------GlDYA~mTGGDV---APlG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLf 477 (630)
T KOG0742|consen 409 --------GLDYAIMTGGDV---APLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLF 477 (630)
T ss_pred --------CCceehhcCCCc---cccchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHH
Confidence 443333333332 1222355677999999997654 6788999999999887766543332 3344444
Q ss_pred ----cCCCcEEEEEechHHHHhhhhcCHHHhccCC-ccccCCCCHHHHHHHHHHHHHhHh
Q 005511 167 ----ARGELQCIGATTLDEYRKHIEKDPALERRFQ-PVKVPEPSVDETIQILKGLRERYE 221 (693)
Q Consensus 167 ----~~~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~ 221 (693)
.+.+++++.+||.+. .+|.++..|++ +|+||.|..+||.++|..+++++.
T Consensus 478 RTGdqSrdivLvlAtNrpg-----dlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi 532 (630)
T KOG0742|consen 478 RTGDQSRDIVLVLATNRPG-----DLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYI 532 (630)
T ss_pred HhcccccceEEEeccCCcc-----chhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHh
Confidence 356799999999998 79999999998 899999999999999999998775
No 160
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=7.4e-17 Score=175.30 Aligned_cols=192 Identities=20% Similarity=0.304 Sum_probs=132.2
Q ss_pred HHHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCC----cceeeec-c
Q 005511 368 LKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE----EAMIRLD-M 442 (693)
Q Consensus 368 ~~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~----~~~~~~~-~ 442 (693)
.+++..-+++++||+.+++.|.+++...+. .+.+||+||+|||||++|+++|+.+++.. .+|..+. |
T Consensus 8 ~kyRP~~f~divGq~~v~~~L~~~~~~~~l--------~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 79 (509)
T PRK14958 8 RKWRPRCFQEVIGQAPVVRALSNALDQQYL--------HHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENC 79 (509)
T ss_pred HHHCCCCHHHhcCCHHHHHHHHHHHHhCCC--------CeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHH
Confidence 345666788999999999999999876532 13489999999999999999999996532 1221111 1
Q ss_pred ccccchhhhhhhcC-CCCCCcCcCccchhhHHHHc----CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeec
Q 005511 443 SEFMERHTVSKLIG-SPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDF 517 (693)
Q Consensus 443 ~~~~~~~~~~~l~g-~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~ 517 (693)
..+. .....+++- ...+..+..+.+.+.+.+.. +.+.|+||||+|++++..+|.||+.||+ +.
T Consensus 80 ~~i~-~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEe-----------pp 147 (509)
T PRK14958 80 REID-EGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEE-----------PP 147 (509)
T ss_pred HHHh-cCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhc-----------cC
Confidence 1100 000001110 01112333333444444332 3457999999999999999999999998 45
Q ss_pred CCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHH
Q 005511 518 KNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIM 597 (693)
Q Consensus 518 ~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~ 597 (693)
.+++||++|+.... +.+.+.+|| ..+.|.+++.+++.+.+...
T Consensus 148 ~~~~fIlattd~~k------------------------------------l~~tI~SRc-~~~~f~~l~~~~i~~~l~~i 190 (509)
T PRK14958 148 SHVKFILATTDHHK------------------------------------LPVTVLSRC-LQFHLAQLPPLQIAAHCQHL 190 (509)
T ss_pred CCeEEEEEECChHh------------------------------------chHHHHHHh-hhhhcCCCCHHHHHHHHHHH
Confidence 67888988874332 567899999 89999999999999888777
Q ss_pred HHHHHHHHhcCCCeEEeCHHHHHHHHHh
Q 005511 598 LKEVFDRLKTKDIELQVTERFRERVVEE 625 (693)
Q Consensus 598 l~~~~~~~~~~~~~l~~~~~~~~~l~~~ 625 (693)
++.. |+ .+++++++.+++.
T Consensus 191 l~~e-------gi--~~~~~al~~ia~~ 209 (509)
T PRK14958 191 LKEE-------NV--EFENAALDLLARA 209 (509)
T ss_pred HHHc-------CC--CCCHHHHHHHHHH
Confidence 6542 43 4789999988874
No 161
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=7.2e-17 Score=172.33 Aligned_cols=206 Identities=16% Similarity=0.196 Sum_probs=139.1
Q ss_pred HHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCc----ceeeec-cc
Q 005511 369 KMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE----AMIRLD-MS 443 (693)
Q Consensus 369 ~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~----~~~~~~-~~ 443 (693)
+++..-+++++||+.+++.+.+++...+. .+++||+||+|+|||++|+++|+.+++... ++..+. |.
T Consensus 6 KyRP~~f~dliGQe~vv~~L~~a~~~~ri--------~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~ 77 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFTLNKI--------PQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCI 77 (491)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcCCC--------CceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHH
Confidence 45556788999999999988888765431 246999999999999999999998854322 111110 11
Q ss_pred cccchhhhhhhc-CCCCCCcCcCccchhhHHHHc----CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecC
Q 005511 444 EFMERHTVSKLI-GSPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFK 518 (693)
Q Consensus 444 ~~~~~~~~~~l~-g~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~ 518 (693)
.+... ...+++ -..++..|..+.+.+.+.+.. +.+.|+||||+|.++...+|.|++.||+ +.+
T Consensus 78 ~i~~~-~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEe-----------Pp~ 145 (491)
T PRK14964 78 SIKNS-NHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEE-----------PAP 145 (491)
T ss_pred HHhcc-CCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhC-----------CCC
Confidence 11000 000100 011123343334455555443 3467999999999999999999999998 456
Q ss_pred CeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHHH
Q 005511 519 NTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIML 598 (693)
Q Consensus 519 ~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l 598 (693)
+++||++|+.... +.+.+.+|| ..+.|.+++.+++.+.+...+
T Consensus 146 ~v~fIlatte~~K------------------------------------l~~tI~SRc-~~~~f~~l~~~el~~~L~~ia 188 (491)
T PRK14964 146 HVKFILATTEVKK------------------------------------IPVTIISRC-QRFDLQKIPTDKLVEHLVDIA 188 (491)
T ss_pred CeEEEEEeCChHH------------------------------------HHHHHHHhh-eeeecccccHHHHHHHHHHHH
Confidence 7888888863332 567899999 999999999999998887766
Q ss_pred HHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHHH
Q 005511 599 KEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRL 643 (693)
Q Consensus 599 ~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~ 643 (693)
... |+ .+++++++.|++.+ . .+.|.+.+.+++.
T Consensus 189 ~~E-------gi--~i~~eAL~lIa~~s-~--GslR~alslLdql 221 (491)
T PRK14964 189 KKE-------NI--EHDEESLKLIAENS-S--GSMRNALFLLEQA 221 (491)
T ss_pred HHc-------CC--CCCHHHHHHHHHHc-C--CCHHHHHHHHHHH
Confidence 532 33 48999999988752 2 2355555555443
No 162
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.71 E-value=1.5e-16 Score=174.90 Aligned_cols=166 Identities=23% Similarity=0.333 Sum_probs=121.5
Q ss_pred hccccChHHHHHHHHHHHHHHhhc---CCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhh
Q 005511 375 HKRVIGQDEAVKAISRAIRRARVG---LKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTV 451 (693)
Q Consensus 375 ~~~v~g~~~~~~~l~~~~~~~~~~---~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~ 451 (693)
+++++|++.+++.+.+.+...... ......+..++||+||||||||++|+++|... +.+|+.++++++.+.
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~--- 127 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPFFSISGSDFVEM--- 127 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCeeeccHHHHHHH---
Confidence 456778888887777666532210 00011222359999999999999999999987 788999888876543
Q ss_pred hhhcCCCCCCcCcCcc--chhhHHHHcCCCEEEEEccCcccCH--------------HHHHHHHHHhhcceeeCCCCCee
Q 005511 452 SKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKAHP--------------DVFNMMLQILEDGRLTDSKGRTV 515 (693)
Q Consensus 452 ~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~l~~--------------~~~~~Ll~~le~~~~~~~~~~~~ 515 (693)
|+|..+. +.++..++...++||||||+|.+.+ .+++.|+..|++..
T Consensus 128 ---------~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~--------- 189 (495)
T TIGR01241 128 ---------FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG--------- 189 (495)
T ss_pred ---------HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcccc---------
Confidence 4444432 5567777777789999999998732 35677777776521
Q ss_pred ecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhh--ccCcEEEcCCCCHHHHHHH
Q 005511 516 DFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLN--RLDEMIVFRQLTKLEVKEI 593 (693)
Q Consensus 516 ~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~--R~~~~v~f~~l~~~~~~~i 593 (693)
...++++|+|||.... ++|++++ |||..+.+++|+.++..+|
T Consensus 190 ~~~~v~vI~aTn~~~~------------------------------------ld~al~r~gRfd~~i~i~~Pd~~~R~~i 233 (495)
T TIGR01241 190 TNTGVIVIAATNRPDV------------------------------------LDPALLRPGRFDRQVVVDLPDIKGREEI 233 (495)
T ss_pred CCCCeEEEEecCChhh------------------------------------cCHHHhcCCcceEEEEcCCCCHHHHHHH
Confidence 1235789999996654 7899985 9999999999999999999
Q ss_pred HHHHHHH
Q 005511 594 ADIMLKE 600 (693)
Q Consensus 594 ~~~~l~~ 600 (693)
++.++..
T Consensus 234 l~~~l~~ 240 (495)
T TIGR01241 234 LKVHAKN 240 (495)
T ss_pred HHHHHhc
Confidence 9887754
No 163
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=2.7e-16 Score=167.66 Aligned_cols=203 Identities=19% Similarity=0.183 Sum_probs=148.7
Q ss_pred hhhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCCCC-eEEECCCCChHHHHHHHHHHHHhcCCCCC-----------C--
Q 005511 30 TNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDVPD-----------T-- 95 (693)
Q Consensus 30 ~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~~~-vLl~Gp~GtGKT~la~~la~~l~~~~~~~-----------~-- 95 (693)
..|++++||.+|++++||+.+++.|..++.....+| +||+||||+||||+|+.+|+.+.+..... +
T Consensus 4 ~~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~ 83 (397)
T PRK14955 4 QVIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGE 83 (397)
T ss_pred HHHHHhcCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCC
Confidence 357899999999999999999999999999876666 88999999999999999999997632100 0
Q ss_pred ---------CCCceEEEEeccccccCCcccchHHHHHHHHHHHHH----hCCCeEEEEeccchhhhCCCCCChHhHHHHH
Q 005511 96 ---------IEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANIL 162 (693)
Q Consensus 96 ---------~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~----~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L 162 (693)
..+..++.++.... .....++.+...+. .+...|++|||+|.+.. ..++.|
T Consensus 84 c~~c~~~~~~~~~n~~~~~~~~~--------~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~--------~~~~~L 147 (397)
T PRK14955 84 CESCRDFDAGTSLNISEFDAASN--------NSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI--------AAFNAF 147 (397)
T ss_pred CHHHHHHhcCCCCCeEeeccccc--------CCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH--------HHHHHH
Confidence 00112333322110 11233445544442 23456999999999953 356778
Q ss_pred hhhhcC--CCcEEEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhh
Q 005511 163 KPSLAR--GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLS 240 (693)
Q Consensus 163 ~~~l~~--~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~ 240 (693)
...+++ ...++|++++... .+.+++.+|+..++|++++.++..+.++..++. .++.+++++++.++..+
T Consensus 148 Lk~LEep~~~t~~Il~t~~~~-----kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~----~g~~i~~~al~~l~~~s 218 (397)
T PRK14955 148 LKTLEEPPPHAIFIFATTELH-----KIPATIASRCQRFNFKRIPLEEIQQQLQGICEA----EGISVDADALQLIGRKA 218 (397)
T ss_pred HHHHhcCCCCeEEEEEeCChH-----HhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHc
Confidence 888875 3566777776544 577899999999999999999998888877763 57889999999999999
Q ss_pred hhhhcccCCchhhhhHHHHHhhH
Q 005511 241 YQYISDRFLPDKAIDLIDEAGSR 263 (693)
Q Consensus 241 ~~~~~~~~~~~~~~~ll~~a~~~ 263 (693)
.+.+ +.+...++.....
T Consensus 219 ~g~l------r~a~~~L~kl~~~ 235 (397)
T PRK14955 219 QGSM------RDAQSILDQVIAF 235 (397)
T ss_pred CCCH------HHHHHHHHHHHHh
Confidence 8764 6777777765443
No 164
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.71 E-value=3.7e-16 Score=165.94 Aligned_cols=202 Identities=22% Similarity=0.283 Sum_probs=149.1
Q ss_pred hhhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCCCC-eEEECCCCChHHHHHHHHHHHHhcCCCCC--------------
Q 005511 30 TNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDVPD-------------- 94 (693)
Q Consensus 30 ~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~~~-vLl~Gp~GtGKT~la~~la~~l~~~~~~~-------------- 94 (693)
.+|.+++||.+|++++|+++.++.+...+.....+| +||+||||+|||++++.+++.+.+...+.
T Consensus 2 ~~~~~~~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~ 81 (355)
T TIGR02397 2 QVLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEIN 81 (355)
T ss_pred ccHHHHhCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 479999999999999999999999999988766555 68999999999999999999987532110
Q ss_pred CCCCceEEEEeccccccCCcccchHHHHHHHHHHHHHh----CCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC--
Q 005511 95 TIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQ----SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR-- 168 (693)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~----~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~-- 168 (693)
......++.++.... .....++.++..+.. ....|++|||+|.+.. ...+.|...++.
T Consensus 82 ~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~--------~~~~~Ll~~le~~~ 145 (355)
T TIGR02397 82 SGSSLDVIEIDAASN--------NGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK--------SAFNALLKTLEEPP 145 (355)
T ss_pred cCCCCCEEEeecccc--------CCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH--------HHHHHHHHHHhCCc
Confidence 001223444543211 112335555555432 3456999999998842 356777777764
Q ss_pred CCcEEEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccC
Q 005511 169 GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRF 248 (693)
Q Consensus 169 ~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 248 (693)
..+.+|++++.+. .+.+++++|+..++|++|+.+++..+++..+++ .++.++++++..++..+.+.
T Consensus 146 ~~~~lIl~~~~~~-----~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~----~g~~i~~~a~~~l~~~~~g~----- 211 (355)
T TIGR02397 146 EHVVFILATTEPH-----KIPATILSRCQRFDFKRIPLEDIVERLKKILDK----EGIKIEDEALELIARAADGS----- 211 (355)
T ss_pred cceeEEEEeCCHH-----HHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC-----
Confidence 4567777777665 567899999999999999999999999987764 56788999999999887654
Q ss_pred CchhhhhHHHHHhh
Q 005511 249 LPDKAIDLIDEAGS 262 (693)
Q Consensus 249 ~~~~~~~ll~~a~~ 262 (693)
++.+.+.++.+..
T Consensus 212 -~~~a~~~lekl~~ 224 (355)
T TIGR02397 212 -LRDALSLLDQLIS 224 (355)
T ss_pred -hHHHHHHHHHHHh
Confidence 3667777766554
No 165
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=4.8e-17 Score=152.63 Aligned_cols=161 Identities=26% Similarity=0.411 Sum_probs=127.6
Q ss_pred hccccChHHHHHHHHHHHHHH--------hhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeecccccc
Q 005511 375 HKRVIGQDEAVKAISRAIRRA--------RVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFM 446 (693)
Q Consensus 375 ~~~v~g~~~~~~~l~~~~~~~--------~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~ 446 (693)
..++-|..+.++.+++.+... .+|+.+|+ ++|+|||||||||.+|+++|+.. +.-|+++-.+++.
T Consensus 176 y~dvggckeqieklrevve~pll~perfv~lgidppk----gvllygppgtgktl~aravanrt---dacfirvigselv 248 (435)
T KOG0729|consen 176 YSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPK----GVLLYGPPGTGKTLCARAVANRT---DACFIRVIGSELV 248 (435)
T ss_pred cccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCC----ceEEeCCCCCchhHHHHHHhccc---CceEEeehhHHHH
Confidence 456778888888888877543 34544443 59999999999999999999875 7889999888888
Q ss_pred chhhhhhhcCCCCCCcCcCcc--chhhHHHHcCCCEEEEEccCccc-----------CHHHHHHHHHHhhcceeeCCCCC
Q 005511 447 ERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKA-----------HPDVFNMMLQILEDGRLTDSKGR 513 (693)
Q Consensus 447 ~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~l-----------~~~~~~~Ll~~le~~~~~~~~~~ 513 (693)
.+ |+|+..+ +.+|+.++...-|++||||+|.+ +.++|..+|.++..-.-.+
T Consensus 249 qk------------yvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfd---- 312 (435)
T KOG0729|consen 249 QK------------YVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFD---- 312 (435)
T ss_pred HH------------HhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCC----
Confidence 76 8887665 78899999888899999999987 4568998888885421112
Q ss_pred eeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHh--hccCcEEEcCCCCHHHHH
Q 005511 514 TVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFL--NRLDEMIVFRQLTKLEVK 591 (693)
Q Consensus 514 ~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~--~R~~~~v~f~~l~~~~~~ 591 (693)
+..|+-++++||.+.. ++|+|+ +|+|..|.|..++.+-..
T Consensus 313 --prgnikvlmatnrpdt------------------------------------ldpallrpgrldrkvef~lpdlegrt 354 (435)
T KOG0729|consen 313 --PRGNIKVLMATNRPDT------------------------------------LDPALLRPGRLDRKVEFGLPDLEGRT 354 (435)
T ss_pred --CCCCeEEEeecCCCCC------------------------------------cCHhhcCCcccccceeccCCcccccc
Confidence 2348889999997765 889999 799999999999998888
Q ss_pred HHHHH
Q 005511 592 EIADI 596 (693)
Q Consensus 592 ~i~~~ 596 (693)
.|++.
T Consensus 355 ~i~ki 359 (435)
T KOG0729|consen 355 HIFKI 359 (435)
T ss_pred eeEEE
Confidence 88743
No 166
>PLN03025 replication factor C subunit; Provisional
Probab=99.71 E-value=1.2e-16 Score=165.87 Aligned_cols=175 Identities=19% Similarity=0.268 Sum_probs=124.1
Q ss_pred HHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCC--cceeeeccccccc
Q 005511 370 MEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE--EAMIRLDMSEFME 447 (693)
Q Consensus 370 ~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~--~~~~~~~~~~~~~ 447 (693)
++..-+.+++||+++++.|...+.... .++++|+||||||||++|+++|+.+++.+ ..++.++.++...
T Consensus 7 yrP~~l~~~~g~~~~~~~L~~~~~~~~---------~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~ 77 (319)
T PLN03025 7 YRPTKLDDIVGNEDAVSRLQVIARDGN---------MPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRG 77 (319)
T ss_pred cCCCCHHHhcCcHHHHHHHHHHHhcCC---------CceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccccc
Confidence 344456778999999888876654321 13699999999999999999999986643 2344444443322
Q ss_pred hhhhhhhcCCCCCCcCcCccchhhHHHH------cCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeE
Q 005511 448 RHTVSKLIGSPPGYVGYTEGGQLTEAVR------RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTL 521 (693)
Q Consensus 448 ~~~~~~l~g~~~~~~g~~~~~~l~~~~~------~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~ 521 (693)
...+... +..... .....|++|||+|.++...|+.|++.||.. ...+.
T Consensus 78 ~~~vr~~---------------i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~-----------~~~t~ 131 (319)
T PLN03025 78 IDVVRNK---------------IKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIY-----------SNTTR 131 (319)
T ss_pred HHHHHHH---------------HHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcc-----------cCCce
Confidence 1111111 111111 123579999999999999999999999862 23567
Q ss_pred EEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHHHHHH
Q 005511 522 LIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEV 601 (693)
Q Consensus 522 iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l~~~ 601 (693)
||+++|.... +.+++.+|| ..+.|.+++.+++...+...++.
T Consensus 132 ~il~~n~~~~------------------------------------i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~- 173 (319)
T PLN03025 132 FALACNTSSK------------------------------------IIEPIQSRC-AIVRFSRLSDQEILGRLMKVVEA- 173 (319)
T ss_pred EEEEeCCccc------------------------------------cchhHHHhh-hcccCCCCCHHHHHHHHHHHHHH-
Confidence 8888885443 568999999 89999999999999888766543
Q ss_pred HHHHhcCCCeEEeCHHHHHHHHHh
Q 005511 602 FDRLKTKDIELQVTERFRERVVEE 625 (693)
Q Consensus 602 ~~~~~~~~~~l~~~~~~~~~l~~~ 625 (693)
.|+ .++++++++++..
T Consensus 174 ------egi--~i~~~~l~~i~~~ 189 (319)
T PLN03025 174 ------EKV--PYVPEGLEAIIFT 189 (319)
T ss_pred ------cCC--CCCHHHHHHHHHH
Confidence 244 4889999999874
No 167
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.71 E-value=4e-17 Score=173.27 Aligned_cols=210 Identities=21% Similarity=0.336 Sum_probs=156.8
Q ss_pred HHHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCC----cceeeeccc
Q 005511 368 LKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE----EAMIRLDMS 443 (693)
Q Consensus 368 ~~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~----~~~~~~~~~ 443 (693)
.+++...|.+++||+.+++.|+.++...+.. +.+||.||-|||||++||.+|+.+++.+ .||..+...
T Consensus 8 rKyRP~~F~evvGQe~v~~~L~nal~~~ri~--------hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C 79 (515)
T COG2812 8 RKYRPKTFDDVVGQEHVVKTLSNALENGRIA--------HAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC 79 (515)
T ss_pred HHhCcccHHHhcccHHHHHHHHHHHHhCcch--------hhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh
Confidence 4566778899999999999999999876532 3599999999999999999999996653 344333221
Q ss_pred cccchhhhhhhcC-CCCCCcCcCccchhhHHHHcCC----CEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecC
Q 005511 444 EFMERHTVSKLIG-SPPGYVGYTEGGQLTEAVRRRP----YTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFK 518 (693)
Q Consensus 444 ~~~~~~~~~~l~g-~~~~~~g~~~~~~l~~~~~~~~----~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~ 518 (693)
.-....+..+++- +.++..|.++.+.+.+.+.-+| +.|++|||++.++....|+||+.+|+ +++
T Consensus 80 k~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEE-----------PP~ 148 (515)
T COG2812 80 KEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEE-----------PPS 148 (515)
T ss_pred HhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhccccc-----------Ccc
Confidence 1111112222221 1123446666677777766544 67999999999999999999999999 788
Q ss_pred CeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHHH
Q 005511 519 NTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIML 598 (693)
Q Consensus 519 ~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l 598 (693)
+++||++|+.... +++..++|| +.+.|..++.+++...+...+
T Consensus 149 hV~FIlATTe~~K------------------------------------ip~TIlSRc-q~f~fkri~~~~I~~~L~~i~ 191 (515)
T COG2812 149 HVKFILATTEPQK------------------------------------IPNTILSRC-QRFDFKRLDLEEIAKHLAAIL 191 (515)
T ss_pred CeEEEEecCCcCc------------------------------------Cchhhhhcc-ccccccCCCHHHHHHHHHHHH
Confidence 9999999985554 889999999 999999999999998887777
Q ss_pred HHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHHHHH
Q 005511 599 KEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLE 645 (693)
Q Consensus 599 ~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~ 645 (693)
.+. + +.++++++..+++. .+.+.|+.-+.+.+++.
T Consensus 192 ~~E-------~--I~~e~~aL~~ia~~---a~Gs~RDalslLDq~i~ 226 (515)
T COG2812 192 DKE-------G--INIEEDALSLIARA---AEGSLRDALSLLDQAIA 226 (515)
T ss_pred Hhc-------C--CccCHHHHHHHHHH---cCCChhhHHHHHHHHHH
Confidence 642 3 45899999999874 22447777666666554
No 168
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.71 E-value=1.2e-16 Score=181.58 Aligned_cols=207 Identities=20% Similarity=0.298 Sum_probs=137.6
Q ss_pred HHHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCc----ceeeec-c
Q 005511 368 LKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE----AMIRLD-M 442 (693)
Q Consensus 368 ~~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~----~~~~~~-~ 442 (693)
.+++...|.+|+||+.+++.|.+.+...+.. +.+||+||+|||||++|++||+.+++... +|..++ |
T Consensus 7 ~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~--------Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC 78 (824)
T PRK07764 7 RRYRPATFAEVIGQEHVTEPLSTALDSGRIN--------HAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSC 78 (824)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhCCCC--------ceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHH
Confidence 3455566889999999999999998764321 34899999999999999999999965321 221111 1
Q ss_pred ccccch----hhhhhhcCCCCCCcCcCccchhhHHHH----cCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCe
Q 005511 443 SEFMER----HTVSKLIGSPPGYVGYTEGGQLTEAVR----RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRT 514 (693)
Q Consensus 443 ~~~~~~----~~~~~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~ 514 (693)
..+... .++..+-+ ....|.++.+.+.+.+. ...+.|+||||+|+|+...+|.||++||+
T Consensus 79 ~~~~~g~~~~~dv~eida--as~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEE---------- 146 (824)
T PRK07764 79 VALAPGGPGSLDVTEIDA--ASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEE---------- 146 (824)
T ss_pred HHHHcCCCCCCcEEEecc--cccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhC----------
Confidence 000000 00100100 01122222233333322 24568999999999999999999999998
Q ss_pred eecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHH
Q 005511 515 VDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIA 594 (693)
Q Consensus 515 ~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~ 594 (693)
...+++||++|+.... +.+.+.+|| .++.|.+++.+++.+++
T Consensus 147 -pP~~~~fIl~tt~~~k------------------------------------Ll~TIrSRc-~~v~F~~l~~~~l~~~L 188 (824)
T PRK07764 147 -PPEHLKFIFATTEPDK------------------------------------VIGTIRSRT-HHYPFRLVPPEVMRGYL 188 (824)
T ss_pred -CCCCeEEEEEeCChhh------------------------------------hhHHHHhhe-eEEEeeCCCHHHHHHHH
Confidence 4567888888864332 557899999 99999999999999988
Q ss_pred HHHHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHHHH
Q 005511 595 DIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLL 644 (693)
Q Consensus 595 ~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i 644 (693)
...++.. |+ .++++++.+|+... .+ ..|...+.+++++
T Consensus 189 ~~il~~E-------Gv--~id~eal~lLa~~s-gG--dlR~Al~eLEKLi 226 (824)
T PRK07764 189 ERICAQE-------GV--PVEPGVLPLVIRAG-GG--SVRDSLSVLDQLL 226 (824)
T ss_pred HHHHHHc-------CC--CCCHHHHHHHHHHc-CC--CHHHHHHHHHHHH
Confidence 7766431 43 47888888888742 22 2555555555433
No 169
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=9.8e-17 Score=173.84 Aligned_cols=206 Identities=19% Similarity=0.313 Sum_probs=137.3
Q ss_pred HHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCC----cceeeecccc
Q 005511 369 KMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE----EAMIRLDMSE 444 (693)
Q Consensus 369 ~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~----~~~~~~~~~~ 444 (693)
+++..-+++++||+.+++.+...+...+. .+.+||+||+|||||++|+++|+.+++.. .++..+....
T Consensus 9 KyRP~~f~diiGq~~~v~~L~~~i~~~rl--------~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~ 80 (546)
T PRK14957 9 KYRPQSFAEVAGQQHALNSLVHALETQKV--------HHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCV 80 (546)
T ss_pred HHCcCcHHHhcCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHH
Confidence 45566678999999999999888875431 23489999999999999999999986421 2221111000
Q ss_pred ccchhhhhhhcC-CCCCCcCcCccchhhHHHHc----CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCC
Q 005511 445 FMERHTVSKLIG-SPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKN 519 (693)
Q Consensus 445 ~~~~~~~~~l~g-~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~ 519 (693)
........+++. ......|..+.+.+.+.+.. +.+.|+||||+|+++...+|.||+.||+ +..+
T Consensus 81 ~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEe-----------pp~~ 149 (546)
T PRK14957 81 AINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEE-----------PPEY 149 (546)
T ss_pred HHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhc-----------CCCC
Confidence 000011111111 01122333333445444442 3467999999999999999999999998 3456
Q ss_pred eEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHHHH
Q 005511 520 TLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLK 599 (693)
Q Consensus 520 ~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l~ 599 (693)
++||++|+.... +.+.+++|| .++.|.+++.+++.+.+...+.
T Consensus 150 v~fIL~Ttd~~k------------------------------------il~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~ 192 (546)
T PRK14957 150 VKFILATTDYHK------------------------------------IPVTILSRC-IQLHLKHISQADIKDQLKIILA 192 (546)
T ss_pred ceEEEEECChhh------------------------------------hhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHH
Confidence 778887763322 556799999 9999999999999988877665
Q ss_pred HHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHH
Q 005511 600 EVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMR 642 (693)
Q Consensus 600 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~ 642 (693)
.. | +.++++++++|+..+ . ...|.+-+.+++
T Consensus 193 ~e-------g--i~~e~~Al~~Ia~~s-~--GdlR~alnlLek 223 (546)
T PRK14957 193 KE-------N--INSDEQSLEYIAYHA-K--GSLRDALSLLDQ 223 (546)
T ss_pred Hc-------C--CCCCHHHHHHHHHHc-C--CCHHHHHHHHHH
Confidence 41 4 358999999998742 2 225555555543
No 170
>CHL00176 ftsH cell division protein; Validated
Probab=99.70 E-value=2.9e-16 Score=174.18 Aligned_cols=166 Identities=21% Similarity=0.316 Sum_probs=119.2
Q ss_pred hccccChHHHHHHHHHHHHHHhhcCC---CCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhh
Q 005511 375 HKRVIGQDEAVKAISRAIRRARVGLK---NPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTV 451 (693)
Q Consensus 375 ~~~v~g~~~~~~~l~~~~~~~~~~~~---~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~ 451 (693)
++++.|.+++++.+.+.+...+.... ....+..++||+||||||||++|+++|... +.+|+.++++++...
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~---~~p~i~is~s~f~~~--- 255 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---EVPFFSISGSEFVEM--- 255 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeeeccHHHHHHH---
Confidence 45677888877777666543321111 011222359999999999999999999987 789999998887532
Q ss_pred hhhcCCCCCCcCcC--ccchhhHHHHcCCCEEEEEccCcccCH--------------HHHHHHHHHhhcceeeCCCCCee
Q 005511 452 SKLIGSPPGYVGYT--EGGQLTEAVRRRPYTVVLFDEIEKAHP--------------DVFNMMLQILEDGRLTDSKGRTV 515 (693)
Q Consensus 452 ~~l~g~~~~~~g~~--~~~~l~~~~~~~~~~vl~iDEid~l~~--------------~~~~~Ll~~le~~~~~~~~~~~~ 515 (693)
++|.. ..+.++..++...++||||||+|.+.. .+++.||..|++..
T Consensus 256 ---------~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~--------- 317 (638)
T CHL00176 256 ---------FVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFK--------- 317 (638)
T ss_pred ---------hhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcccc---------
Confidence 23322 225567777777889999999998832 25666777666421
Q ss_pred ecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHh--hccCcEEEcCCCCHHHHHHH
Q 005511 516 DFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFL--NRLDEMIVFRQLTKLEVKEI 593 (693)
Q Consensus 516 ~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~--~R~~~~v~f~~l~~~~~~~i 593 (693)
...++++|++||.... ++|+++ +|||..+.|++|+.+++.+|
T Consensus 318 ~~~~ViVIaaTN~~~~------------------------------------LD~ALlRpGRFd~~I~v~lPd~~~R~~I 361 (638)
T CHL00176 318 GNKGVIVIAATNRVDI------------------------------------LDAALLRPGRFDRQITVSLPDREGRLDI 361 (638)
T ss_pred CCCCeeEEEecCchHh------------------------------------hhhhhhccccCceEEEECCCCHHHHHHH
Confidence 1246789999986543 678888 49999999999999999999
Q ss_pred HHHHHHH
Q 005511 594 ADIMLKE 600 (693)
Q Consensus 594 ~~~~l~~ 600 (693)
++.++..
T Consensus 362 L~~~l~~ 368 (638)
T CHL00176 362 LKVHARN 368 (638)
T ss_pred HHHHHhh
Confidence 9888764
No 171
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.70 E-value=2e-16 Score=167.36 Aligned_cols=161 Identities=25% Similarity=0.406 Sum_probs=117.8
Q ss_pred hccccChHHHHHHHHHHHHHHh--------hcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeecccccc
Q 005511 375 HKRVIGQDEAVKAISRAIRRAR--------VGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFM 446 (693)
Q Consensus 375 ~~~v~g~~~~~~~l~~~~~~~~--------~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~ 446 (693)
+.+|.|.+..++.+.+.+.... .+.. +..++||+||||||||++|+++|+.+ ..+|+.+..+++.
T Consensus 182 ~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~----~p~gVLL~GPPGTGKT~LAraIA~el---~~~fi~V~~seL~ 254 (438)
T PTZ00361 182 YADIGGLEQQIQEIKEAVELPLTHPELYDDIGIK----PPKGVILYGPPGTGKTLLAKAVANET---SATFLRVVGSELI 254 (438)
T ss_pred HHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCC----CCcEEEEECCCCCCHHHHHHHHHHhh---CCCEEEEecchhh
Confidence 4567888899988888886432 1222 22369999999999999999999997 6778888777665
Q ss_pred chhhhhhhcCCCCCCcCcCcc--chhhHHHHcCCCEEEEEccCcccC-----------HHHHHHHHH---HhhcceeeCC
Q 005511 447 ERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKAH-----------PDVFNMMLQ---ILEDGRLTDS 510 (693)
Q Consensus 447 ~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~l~-----------~~~~~~Ll~---~le~~~~~~~ 510 (693)
.. |+|..+. +.++..++...++||||||+|.+. ..++..++. .+++..
T Consensus 255 ~k------------~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~---- 318 (438)
T PTZ00361 255 QK------------YLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFD---- 318 (438)
T ss_pred hh------------hcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhc----
Confidence 32 5565443 556677777778999999999873 234444444 443311
Q ss_pred CCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHh--hccCcEEEcCCCCHH
Q 005511 511 KGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFL--NRLDEMIVFRQLTKL 588 (693)
Q Consensus 511 ~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~--~R~~~~v~f~~l~~~ 588 (693)
...++.+|++||.... ++|+++ +|||..|.|++|+.+
T Consensus 319 -----~~~~V~VI~ATNr~d~------------------------------------LDpaLlRpGRfd~~I~~~~Pd~~ 357 (438)
T PTZ00361 319 -----SRGDVKVIMATNRIES------------------------------------LDPALIRPGRIDRKIEFPNPDEK 357 (438)
T ss_pred -----ccCCeEEEEecCChHH------------------------------------hhHHhccCCeeEEEEEeCCCCHH
Confidence 1246789999996543 778887 599999999999999
Q ss_pred HHHHHHHHHHH
Q 005511 589 EVKEIADIMLK 599 (693)
Q Consensus 589 ~~~~i~~~~l~ 599 (693)
+..+|++.++.
T Consensus 358 ~R~~Il~~~~~ 368 (438)
T PTZ00361 358 TKRRIFEIHTS 368 (438)
T ss_pred HHHHHHHHHHh
Confidence 99999987664
No 172
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.70 E-value=4.5e-16 Score=162.82 Aligned_cols=201 Identities=19% Similarity=0.249 Sum_probs=145.0
Q ss_pred hhhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEecccc
Q 005511 30 TNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLL 109 (693)
Q Consensus 30 ~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l 109 (693)
.+|.++|||.+|++++|++++++.+..++.....++++|+||||||||++++++++.+..... ...++.++.+..
T Consensus 5 ~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~-----~~~~i~~~~~~~ 79 (319)
T PRK00440 5 EIWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDW-----RENFLELNASDE 79 (319)
T ss_pred CccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCcc-----ccceEEeccccc
Confidence 469999999999999999999999999998877788999999999999999999999854211 223444443221
Q ss_pred ccCCcccchHHHHHHHHHHHH--HhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhc--CCCcEEEEEechHHHHhh
Q 005511 110 VAGTKYRGEFEERLKKLMEEI--KQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA--RGELQCIGATTLDEYRKH 185 (693)
Q Consensus 110 ~~~~~~~g~~~~~l~~~~~~~--~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~--~~~v~vI~~t~~~~~~~~ 185 (693)
.. .......+....... ....+.+++|||+|.+... .++.|...++ .....+|++++...
T Consensus 80 ~~----~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~--------~~~~L~~~le~~~~~~~lIl~~~~~~---- 143 (319)
T PRK00440 80 RG----IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD--------AQQALRRTMEMYSQNTRFILSCNYSS---- 143 (319)
T ss_pred cc----hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH--------HHHHHHHHHhcCCCCCeEEEEeCCcc----
Confidence 10 011111222211111 0123569999999988432 4556666666 33466777777554
Q ss_pred hhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhhhhHHHHHhh
Q 005511 186 IEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGS 262 (693)
Q Consensus 186 ~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~a~~ 262 (693)
.+.+++.+|+..++|++++.++...+++..+.+ .++.+++++++.++..+.|. .+.+++.++.++.
T Consensus 144 -~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~----~~~~i~~~al~~l~~~~~gd------~r~~~~~l~~~~~ 209 (319)
T PRK00440 144 -KIIDPIQSRCAVFRFSPLKKEAVAERLRYIAEN----EGIEITDDALEAIYYVSEGD------MRKAINALQAAAA 209 (319)
T ss_pred -ccchhHHHHhheeeeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HHHHHHHHHHHHH
Confidence 567789999999999999999999999987764 56789999999999988765 3677777776554
No 173
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=2.7e-16 Score=172.08 Aligned_cols=207 Identities=18% Similarity=0.271 Sum_probs=138.9
Q ss_pred HHHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCC----cceeeec-c
Q 005511 368 LKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE----EAMIRLD-M 442 (693)
Q Consensus 368 ~~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~----~~~~~~~-~ 442 (693)
.+++...+++++||+.+++.|..++...+. .+.+||+||+|||||++|+++|+.+++.. .++..+. |
T Consensus 5 ~kyRP~~f~eivGq~~i~~~L~~~i~~~r~--------~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 76 (584)
T PRK14952 5 RKYRPATFAEVVGQEHVTEPLSSALDAGRI--------NHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESC 76 (584)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHH
Confidence 345566788999999999999999875431 13479999999999999999999986532 1222111 1
Q ss_pred ccccch-hhhhhhc-CCCCCCcCcCccchhhHHHHc----CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeee
Q 005511 443 SEFMER-HTVSKLI-GSPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVD 516 (693)
Q Consensus 443 ~~~~~~-~~~~~l~-g~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~ 516 (693)
..+... ....+++ -..+...|.++.+.+.+.+.. +.+.|+||||+|.++...+|.||+.||+ +
T Consensus 77 ~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEE-----------p 145 (584)
T PRK14952 77 VALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEE-----------P 145 (584)
T ss_pred HHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhc-----------C
Confidence 111100 0000111 011112233333444444433 4468999999999999999999999998 4
Q ss_pred cCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHH
Q 005511 517 FKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADI 596 (693)
Q Consensus 517 ~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~ 596 (693)
..+++||++|+.... +.+.+.+|| ..+.|.+++.+++.+.+..
T Consensus 146 p~~~~fIL~tte~~k------------------------------------ll~TI~SRc-~~~~F~~l~~~~i~~~L~~ 188 (584)
T PRK14952 146 PEHLIFIFATTEPEK------------------------------------VLPTIRSRT-HHYPFRLLPPRTMRALIAR 188 (584)
T ss_pred CCCeEEEEEeCChHh------------------------------------hHHHHHHhc-eEEEeeCCCHHHHHHHHHH
Confidence 568888988864432 668999999 8999999999999888876
Q ss_pred HHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHH
Q 005511 597 MLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMR 642 (693)
Q Consensus 597 ~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~ 642 (693)
.+... |+ .++++++.+++..+- .+.|...+.+++
T Consensus 189 i~~~e-------gi--~i~~~al~~Ia~~s~---GdlR~aln~Ldq 222 (584)
T PRK14952 189 ICEQE-------GV--VVDDAVYPLVIRAGG---GSPRDTLSVLDQ 222 (584)
T ss_pred HHHHc-------CC--CCCHHHHHHHHHHcC---CCHHHHHHHHHH
Confidence 66532 43 488999998887411 225555555544
No 174
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=6e-16 Score=164.42 Aligned_cols=202 Identities=22% Similarity=0.290 Sum_probs=147.0
Q ss_pred hhhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCC-CCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCC--CceEEEEec
Q 005511 30 TNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTK-NNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIE--GKKVITLDM 106 (693)
Q Consensus 30 ~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~-~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~--~~~~~~~~~ 106 (693)
-.|.++|||.+|++++|++..++.+...+..... +++|||||||+|||++++++++.+.+...+.... +..++.++.
T Consensus 5 ~~~~~k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~ 84 (367)
T PRK14970 5 VVSARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDA 84 (367)
T ss_pred HHHHHHHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEecc
Confidence 3689999999999999999999999999987554 5788999999999999999999987633221111 223333322
Q ss_pred cccccCCcccchHHHHHHHHHHHHHh----CCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC--CCcEEEEEechH
Q 005511 107 GLLVAGTKYRGEFEERLKKLMEEIKQ----SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--GELQCIGATTLD 180 (693)
Q Consensus 107 ~~l~~~~~~~g~~~~~l~~~~~~~~~----~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~~t~~~ 180 (693)
.. ......++.++..+.. ....+++|||+|.+.. ..++.|...++. ...++|++++..
T Consensus 85 ~~--------~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~--------~~~~~ll~~le~~~~~~~~Il~~~~~ 148 (367)
T PRK14970 85 AS--------NNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS--------AAFNAFLKTLEEPPAHAIFILATTEK 148 (367)
T ss_pred cc--------CCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH--------HHHHHHHHHHhCCCCceEEEEEeCCc
Confidence 11 1112345555554432 3456999999998843 246667777764 345666677655
Q ss_pred HHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhhhhHHHHH
Q 005511 181 EYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEA 260 (693)
Q Consensus 181 ~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~a 260 (693)
. .+.+++.+|+..++|++|+.++...++...+.+ .++.+++++++.++..+.+.+ +.+.+.++..
T Consensus 149 ~-----kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~----~g~~i~~~al~~l~~~~~gdl------r~~~~~lekl 213 (367)
T PRK14970 149 H-----KIIPTILSRCQIFDFKRITIKDIKEHLAGIAVK----EGIKFEDDALHIIAQKADGAL------RDALSIFDRV 213 (367)
T ss_pred c-----cCCHHHHhcceeEecCCccHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhCCCCH------HHHHHHHHHH
Confidence 4 678999999999999999999999988877764 678899999999999876543 6677777655
Q ss_pred hh
Q 005511 261 GS 262 (693)
Q Consensus 261 ~~ 262 (693)
+.
T Consensus 214 ~~ 215 (367)
T PRK14970 214 VT 215 (367)
T ss_pred HH
Confidence 43
No 175
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=1.5e-16 Score=171.13 Aligned_cols=203 Identities=20% Similarity=0.316 Sum_probs=133.1
Q ss_pred HHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCc----ceeeecccc
Q 005511 369 KMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE----AMIRLDMSE 444 (693)
Q Consensus 369 ~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~----~~~~~~~~~ 444 (693)
+++...+++++||+.++..|...+...+ ..+++||+||||||||++|+++|+.+.+... |+..++...
T Consensus 7 kyRP~~~~divGq~~i~~~L~~~i~~~~--------l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~ 78 (472)
T PRK14962 7 KYRPKTFSEVVGQDHVKKLIINALKKNS--------ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACR 78 (472)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHHcCC--------CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHH
Confidence 4555667889999999888887776442 2235899999999999999999999854321 221111000
Q ss_pred ccchh---hhhhhcCCCCCCcCcCccchhhHHHHc----CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeec
Q 005511 445 FMERH---TVSKLIGSPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDF 517 (693)
Q Consensus 445 ~~~~~---~~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~ 517 (693)
-.... .+..+-+ +...|..+.+.+.+.+.. +.+.||||||+|.++...++.|+..|++ +.
T Consensus 79 ~i~~g~~~dv~el~a--a~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~-----------p~ 145 (472)
T PRK14962 79 SIDEGTFMDVIELDA--ASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEE-----------PP 145 (472)
T ss_pred HHhcCCCCccEEEeC--cccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHh-----------CC
Confidence 00000 0001100 112222222344444432 2357999999999999999999999997 23
Q ss_pred CCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHH
Q 005511 518 KNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIM 597 (693)
Q Consensus 518 ~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~ 597 (693)
.++++|++|+.... +.+++.+|| .++.|.+++.+++..++...
T Consensus 146 ~~vv~Ilattn~~k------------------------------------l~~~L~SR~-~vv~f~~l~~~el~~~L~~i 188 (472)
T PRK14962 146 SHVVFVLATTNLEK------------------------------------VPPTIISRC-QVIEFRNISDELIIKRLQEV 188 (472)
T ss_pred CcEEEEEEeCChHh------------------------------------hhHHHhcCc-EEEEECCccHHHHHHHHHHH
Confidence 46778877763222 678999999 89999999999999888776
Q ss_pred HHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHH
Q 005511 598 LKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIM 641 (693)
Q Consensus 598 l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~ 641 (693)
+.. .++ .++++++++|++. .. .++|.+-+.++
T Consensus 189 ~~~-------egi--~i~~eal~~Ia~~-s~--GdlR~aln~Le 220 (472)
T PRK14962 189 AEA-------EGI--EIDREALSFIAKR-AS--GGLRDALTMLE 220 (472)
T ss_pred HHH-------cCC--CCCHHHHHHHHHH-hC--CCHHHHHHHHH
Confidence 643 133 5899999999984 22 23554444444
No 176
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.69 E-value=1.8e-16 Score=155.23 Aligned_cols=153 Identities=20% Similarity=0.303 Sum_probs=110.6
Q ss_pred EEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCCcCcCccchhhHHHHc-----CCCEEE
Q 005511 408 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRR-----RPYTVV 482 (693)
Q Consensus 408 ~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~-----~~~~vl 482 (693)
+++|+||||||||++|+.|+...-.....|+.+....- +..+.+.+++..++ ....||
T Consensus 164 SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a-----------------~t~dvR~ife~aq~~~~l~krkTil 226 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNA-----------------KTNDVRDIFEQAQNEKSLTKRKTIL 226 (554)
T ss_pred ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecccc-----------------chHHHHHHHHHHHHHHhhhcceeEE
Confidence 69999999999999999999986333344554443211 11112333333222 335799
Q ss_pred EEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHH
Q 005511 483 LFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTE 562 (693)
Q Consensus 483 ~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~ 562 (693)
|||||++++...|+.||..+|+|.++ +|.+|+-. ..|.
T Consensus 227 FiDEiHRFNksQQD~fLP~VE~G~I~-------------lIGATTEN---------------------PSFq-------- 264 (554)
T KOG2028|consen 227 FIDEIHRFNKSQQDTFLPHVENGDIT-------------LIGATTEN---------------------PSFQ-------- 264 (554)
T ss_pred EeHHhhhhhhhhhhcccceeccCceE-------------EEecccCC---------------------Cccc--------
Confidence 99999999999999999999998655 77777522 2222
Q ss_pred HHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHHHHHHHHHHhcC----CCeEEeCHHHHHHHHHh
Q 005511 563 ELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTK----DIELQVTERFRERVVEE 625 (693)
Q Consensus 563 ~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l~~~~~~~~~~----~~~l~~~~~~~~~l~~~ 625 (693)
++.+|++|| .++.+.+|..+++..|+.+.+.-+.+.-+.. +..+.+++.++++|+..
T Consensus 265 -----ln~aLlSRC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~l 325 (554)
T KOG2028|consen 265 -----LNAALLSRC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYL 325 (554)
T ss_pred -----hhHHHHhcc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHh
Confidence 678999999 9999999999999999998877655433311 23356899999999873
No 177
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.69 E-value=1.6e-16 Score=168.63 Aligned_cols=219 Identities=21% Similarity=0.278 Sum_probs=167.3
Q ss_pred cChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCC
Q 005511 379 IGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSP 458 (693)
Q Consensus 379 ~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 458 (693)
++.+..++.+.+.+++.... ..++++.|.|||||-.+|+++++..- ...||+.+||..+.+....+.|||..
T Consensus 316 ~~~d~s~a~l~rk~~rv~~~-------~~pvll~GEtGtGKe~laraiH~~s~-~~gpfvAvNCaAip~~liesELFGy~ 387 (606)
T COG3284 316 PLLDPSRATLLRKAERVAAT-------DLPVLLQGETGTGKEVLARAIHQNSE-AAGPFVAVNCAAIPEALIESELFGYV 387 (606)
T ss_pred cccCHHHHHHHHHHHHHhhc-------CCCeEecCCcchhHHHHHHHHHhccc-ccCCeEEEEeccchHHhhhHHHhccC
Confidence 45556666666655554321 12599999999999999999999975 78999999999999999999999965
Q ss_pred CC-CcCcCccchhhHHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhcc
Q 005511 459 PG-YVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGG 537 (693)
Q Consensus 459 ~~-~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~ 537 (693)
.| +.|... .--...++.++++.+|+|||..++-..|..||++|++|.++..+|.. ..-++.+|.+|+..-..+....
T Consensus 388 ~GafTga~~-kG~~g~~~~A~gGtlFldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~-~~vdirvi~ath~dl~~lv~~g 465 (606)
T COG3284 388 AGAFTGARR-KGYKGKLEQADGGTLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTR-IKVDIRVIAATHRDLAQLVEQG 465 (606)
T ss_pred ccccccchh-ccccccceecCCCccHHHHhhhchHHHHHHHHHHHhhCceeccCCcc-eeEEEEEEeccCcCHHHHHHcC
Confidence 44 333222 22245667788999999999999999999999999999999988887 6779999999996654444333
Q ss_pred cccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCc-EEEcCCC-CHHHHHHHHHHHHHHHHHHHhcCCCeEEeC
Q 005511 538 RRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDE-MIVFRQL-TKLEVKEIADIMLKEVFDRLKTKDIELQVT 615 (693)
Q Consensus 538 ~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~-~v~f~~l-~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~ 615 (693)
.|+.+|++|++. .|.+||| .+.|....+.+++.+.. ...+.++
T Consensus 466 -----------------------------~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~------~~~~~l~ 510 (606)
T COG3284 466 -----------------------------RFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKREN------DWRLQLD 510 (606)
T ss_pred -----------------------------CchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHcc------CCCccCC
Confidence 389999999955 4777777 33444555555555433 3457799
Q ss_pred HHHHHHHHHhccCCCCCcchHHHHHHHHH
Q 005511 616 ERFRERVVEEGYNPSYGARPLRRAIMRLL 644 (693)
Q Consensus 616 ~~~~~~l~~~~~~~~~g~r~l~~~i~~~i 644 (693)
++++..|..+.|++| .|+|.++|+.+.
T Consensus 511 ~~~~~~l~~~~WPGN--irel~~v~~~~~ 537 (606)
T COG3284 511 DDALARLLAYRWPGN--IRELDNVIERLA 537 (606)
T ss_pred HHHHHHHHhCCCCCc--HHHHHHHHHHHH
Confidence 999999998555555 999999999554
No 178
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=8.4e-16 Score=170.51 Aligned_cols=200 Identities=23% Similarity=0.237 Sum_probs=150.6
Q ss_pred hhhhhhhhcCCCCCccCCHHHHHHHHHHHhcCC-CCCeEEECCCCChHHHHHHHHHHHHhcCCCCC-----C--------
Q 005511 30 TNLTKLAEEGKLDPVVGRQPQIERVVQILGRRT-KNNPCLIGEPGVGKTAIAEGLAQRIASGDVPD-----T-------- 95 (693)
Q Consensus 30 ~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~-~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~-----~-------- 95 (693)
.+|.++|||.+|++++|++..++.|..++.... .+++||+||+|+|||++|+++|+.+.+..... +
T Consensus 4 ~pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~ 83 (620)
T PRK14948 4 EPLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRA 83 (620)
T ss_pred chHHHHhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHH
Confidence 479999999999999999999999999988754 46789999999999999999999997632110 0
Q ss_pred ---CCCceEEEEeccccccCCcccchHHHHHHHHHHHHHh----CCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC
Q 005511 96 ---IEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQ----SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR 168 (693)
Q Consensus 96 ---~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~----~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~ 168 (693)
..+..++.++.. .......++.++..+.. +...|++|||+|.|. .+..+.|++.++.
T Consensus 84 i~~g~h~D~~ei~~~--------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt--------~~a~naLLK~LEe 147 (620)
T PRK14948 84 IAAGNALDVIEIDAA--------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS--------TAAFNALLKTLEE 147 (620)
T ss_pred HhcCCCccEEEEecc--------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC--------HHHHHHHHHHHhc
Confidence 011233334321 11223456666665542 345699999999994 3478888999985
Q ss_pred --CCcEEEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcc
Q 005511 169 --GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISD 246 (693)
Q Consensus 169 --~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 246 (693)
..+++|++|+.+. .+.+.+++||..++|+.++.++....+..++.+ .++.++++++..+++.+.|.+
T Consensus 148 Pp~~tvfIL~t~~~~-----~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~k----egi~is~~al~~La~~s~G~l-- 216 (620)
T PRK14948 148 PPPRVVFVLATTDPQ-----RVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEK----ESIEIEPEALTLVAQRSQGGL-- 216 (620)
T ss_pred CCcCeEEEEEeCChh-----hhhHHHHhheeEEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCCH--
Confidence 4577888887665 578899999999999999999888888776653 567889999999999987753
Q ss_pred cCCchhhhhHHHHH
Q 005511 247 RFLPDKAIDLIDEA 260 (693)
Q Consensus 247 ~~~~~~~~~ll~~a 260 (693)
+.+..+++..
T Consensus 217 ----r~A~~lLekl 226 (620)
T PRK14948 217 ----RDAESLLDQL 226 (620)
T ss_pred ----HHHHHHHHHH
Confidence 6677777653
No 179
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.69 E-value=9.4e-16 Score=151.47 Aligned_cols=188 Identities=13% Similarity=0.149 Sum_probs=133.8
Q ss_pred CCCCcc-C-CHHHHHHHHHHHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCcccc
Q 005511 40 KLDPVV-G-RQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRG 117 (693)
Q Consensus 40 ~~~~ii-G-~~~~~~~l~~~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 117 (693)
+||+++ | ....+..+..+......++++|+||+|||||+|++++++.+.. .+..+.+++......
T Consensus 20 ~fd~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~-------~~~~v~y~~~~~~~~------ 86 (235)
T PRK08084 20 TFASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQ-------RGRAVGYVPLDKRAW------ 86 (235)
T ss_pred CccccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHh-------CCCeEEEEEHHHHhh------
Confidence 678776 4 5567777777766666689999999999999999999998754 255677777654321
Q ss_pred hHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCCcEEEEEechHHHHhhhhcCHHHhccC-
Q 005511 118 EFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYRKHIEKDPALERRF- 196 (693)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~t~~~~~~~~~~l~~~l~~Rf- 196 (693)
....+++...+.. +|+|||++.+.. ...........++...+++...+|++++.++.. .-.+.+.++|||
T Consensus 87 ----~~~~~~~~~~~~d--lliiDdi~~~~~--~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~-l~~~~~~L~SRl~ 157 (235)
T PRK08084 87 ----FVPEVLEGMEQLS--LVCIDNIECIAG--DELWEMAIFDLYNRILESGRTRLLITGDRPPRQ-LNLGLPDLASRLD 157 (235)
T ss_pred ----hhHHHHHHhhhCC--EEEEeChhhhcC--CHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHH-cCcccHHHHHHHh
Confidence 1122233333333 899999998842 233344567778888887776677776654421 112579999999
Q ss_pred --CccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhhhhHHHH
Q 005511 197 --QPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDE 259 (693)
Q Consensus 197 --~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~ 259 (693)
.++++++|+.+++.++++..... .++.+++++++.+++.+.+.+ +.+..+++.
T Consensus 158 ~g~~~~l~~~~~~~~~~~l~~~a~~----~~~~l~~~v~~~L~~~~~~d~------r~l~~~l~~ 212 (235)
T PRK08084 158 WGQIYKLQPLSDEEKLQALQLRARL----RGFELPEDVGRFLLKRLDREM------RTLFMTLDQ 212 (235)
T ss_pred CCceeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhhcCCH------HHHHHHHHH
Confidence 58999999999999999875553 468999999999999887764 455555554
No 180
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=2.6e-16 Score=172.71 Aligned_cols=191 Identities=18% Similarity=0.267 Sum_probs=130.7
Q ss_pred HHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCc---------ceee
Q 005511 369 KMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE---------AMIR 439 (693)
Q Consensus 369 ~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~---------~~~~ 439 (693)
+++..-+++++||+.+++.|.+.+...+. .+.+||+||+|||||++|+++|+.+++.+. +|..
T Consensus 9 KyRP~~f~dviGQe~vv~~L~~~l~~~rl--------~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~ 80 (618)
T PRK14951 9 KYRPRSFSEMVGQEHVVQALTNALTQQRL--------HHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGV 80 (618)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCc
Confidence 45556678899999999999998876532 134799999999999999999999965321 1211
Q ss_pred ec-cccccchhhhhhhcC-CCCCCcCcCccchhhHHHHcC----CCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCC
Q 005511 440 LD-MSEFMERHTVSKLIG-SPPGYVGYTEGGQLTEAVRRR----PYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGR 513 (693)
Q Consensus 440 ~~-~~~~~~~~~~~~l~g-~~~~~~g~~~~~~l~~~~~~~----~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~ 513 (693)
+. |..+ ......+++- ......|..+.+.+.+.+... .+.|+||||+|.++...+|.||+.||+
T Consensus 81 C~~C~~i-~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEE--------- 150 (618)
T PRK14951 81 CQACRDI-DSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEE--------- 150 (618)
T ss_pred cHHHHHH-HcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhccc---------
Confidence 11 1111 1111111111 011122322223344443332 367999999999999999999999998
Q ss_pred eeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHH
Q 005511 514 TVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEI 593 (693)
Q Consensus 514 ~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i 593 (693)
...+++||++|+.... +.+.+++|| ..+.|.+++.+++.+.
T Consensus 151 --PP~~~~fIL~Ttd~~k------------------------------------il~TIlSRc-~~~~f~~Ls~eei~~~ 191 (618)
T PRK14951 151 --PPEYLKFVLATTDPQK------------------------------------VPVTVLSRC-LQFNLRPMAPETVLEH 191 (618)
T ss_pred --CCCCeEEEEEECCchh------------------------------------hhHHHHHhc-eeeecCCCCHHHHHHH
Confidence 3557788888864433 457799999 9999999999999988
Q ss_pred HHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHh
Q 005511 594 ADIMLKEVFDRLKTKDIELQVTERFRERVVEE 625 (693)
Q Consensus 594 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~ 625 (693)
+...+... |+ .++++++++|++.
T Consensus 192 L~~i~~~e-------gi--~ie~~AL~~La~~ 214 (618)
T PRK14951 192 LTQVLAAE-------NV--PAEPQALRLLARA 214 (618)
T ss_pred HHHHHHHc-------CC--CCCHHHHHHHHHH
Confidence 87766431 44 4889999998874
No 181
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=3.6e-16 Score=146.38 Aligned_cols=164 Identities=22% Similarity=0.378 Sum_probs=121.1
Q ss_pred hccccChHHHHHHHHHHHHH--------HhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeecccccc
Q 005511 375 HKRVIGQDEAVKAISRAIRR--------ARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFM 446 (693)
Q Consensus 375 ~~~v~g~~~~~~~l~~~~~~--------~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~ 446 (693)
..++-|.+..++.+.+++.. ...|.++|+ ++|+|||||||||.+||+.|... +..|..+-.++++
T Consensus 170 YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPK----GvLmYGPPGTGKTlmARAcAaqT---~aTFLKLAgPQLV 242 (424)
T KOG0652|consen 170 YSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPK----GVLMYGPPGTGKTLMARACAAQT---NATFLKLAGPQLV 242 (424)
T ss_pred ccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCC----ceEeeCCCCCcHHHHHHHHHHhc---cchHHHhcchHHH
Confidence 35677888888888887732 234544443 59999999999999999999875 6677777776665
Q ss_pred chhhhhhhcCCCCCCcCcCcc--chhhHHHHcCCCEEEEEccCccc-----------CHHHHHHHHHHhhcceeeCCCCC
Q 005511 447 ERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKA-----------HPDVFNMMLQILEDGRLTDSKGR 513 (693)
Q Consensus 447 ~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~l-----------~~~~~~~Ll~~le~~~~~~~~~~ 513 (693)
.. |+|...+ +..|..++...++|+||||+|.+ +.++|..+|.++..-. |
T Consensus 243 QM------------fIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLD-----G- 304 (424)
T KOG0652|consen 243 QM------------FIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD-----G- 304 (424)
T ss_pred hh------------hhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhc-----C-
Confidence 44 5554433 55677777788899999999987 4568888887774310 0
Q ss_pred eeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHh--hccCcEEEcCCCCHHHHH
Q 005511 514 TVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFL--NRLDEMIVFRQLTKLEVK 591 (693)
Q Consensus 514 ~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~--~R~~~~v~f~~l~~~~~~ 591 (693)
--+..++-+|++||.-.- ++|+|+ +|+|+.|.|+.++.+...
T Consensus 305 Fss~~~vKviAATNRvDi------------------------------------LDPALlRSGRLDRKIEfP~Pne~aRa 348 (424)
T KOG0652|consen 305 FSSDDRVKVIAATNRVDI------------------------------------LDPALLRSGRLDRKIEFPHPNEEARA 348 (424)
T ss_pred CCCccceEEEeecccccc------------------------------------cCHHHhhcccccccccCCCCChHHHH
Confidence 012346789999995442 789998 799999999999999999
Q ss_pred HHHHHHHH
Q 005511 592 EIADIMLK 599 (693)
Q Consensus 592 ~i~~~~l~ 599 (693)
.|++.+-.
T Consensus 349 rIlQIHsR 356 (424)
T KOG0652|consen 349 RILQIHSR 356 (424)
T ss_pred HHHHHhhh
Confidence 88865443
No 182
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=99.68 E-value=3.3e-16 Score=150.46 Aligned_cols=236 Identities=22% Similarity=0.348 Sum_probs=156.1
Q ss_pred HHHHHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCC--cceeeeccc
Q 005511 366 RLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE--EAMIRLDMS 443 (693)
Q Consensus 366 ~~~~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~--~~~~~~~~~ 443 (693)
++..++..|...++||.-+++.|..+++... ....|++|+. +-|+|+|||||+.+++.||+.+|..+ .+++..=.+
T Consensus 72 ~~~~Le~dL~~~lfGQHla~~~Vv~alk~~~-~n~~p~KPLv-LSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fva 149 (344)
T KOG2170|consen 72 DLDGLEKDLARALFGQHLAKQLVVNALKSHW-ANPNPRKPLV-LSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVA 149 (344)
T ss_pred cchHHHHHHHHHhhchHHHHHHHHHHHHHHh-cCCCCCCCeE-EEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhh
Confidence 3667888999999999999999999998764 4455888886 88999999999999999999986543 233221111
Q ss_pred cccchhhhhhhcCCCCCCcC-cCc--cchhhHHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCe
Q 005511 444 EFMERHTVSKLIGSPPGYVG-YTE--GGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNT 520 (693)
Q Consensus 444 ~~~~~~~~~~l~g~~~~~~g-~~~--~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~ 520 (693)
..- +.+ ..++. +.+ .+.+.+.++.++.++++|||+||+++..++.|-..++..-. ...+++.++
T Consensus 150 t~h--------FP~-~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLdyyp~----v~gv~frka 216 (344)
T KOG2170|consen 150 TLH--------FPH-ASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLDYYPQ----VSGVDFRKA 216 (344)
T ss_pred hcc--------CCC-hHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhccccc----cccccccce
Confidence 110 001 11111 111 25667778889999999999999999999999999985322 223578899
Q ss_pred EEEEecCCChhhhhh---cccccccccCcCcccchHHHHHHHHHHHH-hhcCchhHh--hccCcEEEcCCCCHHHHHHHH
Q 005511 521 LLIMTSNVGSSVIEK---GGRRIGFDLDYDEKDSSYNRIKSLVTEEL-KQYFRPEFL--NRLDEMIVFRQLTKLEVKEIA 594 (693)
Q Consensus 521 ~iI~~tn~~~~~i~~---~~~~~~f~~~~~~~~~~~~~l~~~~~~~l-~~~~~~~l~--~R~~~~v~f~~l~~~~~~~i~ 594 (693)
+||+-||.+.+.|.+ .....|.......-......+...+.+.. .......++ .++|.+|+|.|+++.+....+
T Consensus 217 IFIfLSN~gg~eI~~~aL~~~~~g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV~~C~ 296 (344)
T KOG2170|consen 217 IFIFLSNAGGSEIARIALENARNGKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHVRSCI 296 (344)
T ss_pred EEEEEcCCcchHHHHHHHHHHHcCCCcccchhhhhhHHHHHhhhccccccccccccchhhHHhhccCcCcccHHHHHHHH
Confidence 999999999877752 22223332222222222222222222211 122223333 677889999999999999999
Q ss_pred HHHHHHHHHHHhcCCCeEEeCHHHHHHHHHh
Q 005511 595 DIMLKEVFDRLKTKDIELQVTERFRERVVEE 625 (693)
Q Consensus 595 ~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~ 625 (693)
+..+.. +| +..+.+.++.+++.
T Consensus 297 r~el~~-------rg--~~~d~~~~erva~~ 318 (344)
T KOG2170|consen 297 RAELRK-------RG--LAPDQDFVERVANS 318 (344)
T ss_pred HHHHHh-------cc--cccchHHHHHHHHh
Confidence 766643 23 44667777666653
No 183
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=4.6e-16 Score=163.98 Aligned_cols=204 Identities=18% Similarity=0.248 Sum_probs=132.5
Q ss_pred HHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCC----cceeee-ccc
Q 005511 369 KMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE----EAMIRL-DMS 443 (693)
Q Consensus 369 ~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~----~~~~~~-~~~ 443 (693)
+++...+++++||+.+++.+.+++...+. .+.+||+||+|+|||++|+++|+.+++.. .|+..+ .|.
T Consensus 9 kyrP~~~~~iiGq~~~~~~l~~~~~~~~~--------~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~ 80 (363)
T PRK14961 9 KWRPQYFRDIIGQKHIVTAISNGLSLGRI--------HHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICK 80 (363)
T ss_pred HhCCCchhhccChHHHHHHHHHHHHcCCC--------CeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 45556778999999999999888865321 23479999999999999999999985421 111111 011
Q ss_pred cccchhhhhhhcC-CCCCCcCcCccchhhHHHHc----CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecC
Q 005511 444 EFMERHTVSKLIG-SPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFK 518 (693)
Q Consensus 444 ~~~~~~~~~~l~g-~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~ 518 (693)
++... ...+++- .+....+....+.+.+.+.. +...|+||||+|+++...+|.|++.+|+ +..
T Consensus 81 ~~~~~-~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe-----------~~~ 148 (363)
T PRK14961 81 EIEKG-LCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEE-----------PPQ 148 (363)
T ss_pred HHhcC-CCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhc-----------CCC
Confidence 11100 0001110 00001121222333333332 2356999999999999999999999998 344
Q ss_pred CeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHHH
Q 005511 519 NTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIML 598 (693)
Q Consensus 519 ~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l 598 (693)
++.||++|+.... +.+.+.+|| ..+.|.|++.+++.+++...+
T Consensus 149 ~~~fIl~t~~~~~------------------------------------l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~ 191 (363)
T PRK14961 149 HIKFILATTDVEK------------------------------------IPKTILSRC-LQFKLKIISEEKIFNFLKYIL 191 (363)
T ss_pred CeEEEEEcCChHh------------------------------------hhHHHHhhc-eEEeCCCCCHHHHHHHHHHHH
Confidence 6778888763322 668899999 899999999999999887766
Q ss_pred HHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHH
Q 005511 599 KEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIM 641 (693)
Q Consensus 599 ~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~ 641 (693)
+.. | +.++++++++++..+ . .+.|...+.++
T Consensus 192 ~~~-------g--~~i~~~al~~ia~~s-~--G~~R~al~~l~ 222 (363)
T PRK14961 192 IKE-------S--IDTDEYALKLIAYHA-H--GSMRDALNLLE 222 (363)
T ss_pred HHc-------C--CCCCHHHHHHHHHHc-C--CCHHHHHHHHH
Confidence 542 3 348899999988742 1 22554444444
No 184
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.68 E-value=9.4e-16 Score=167.88 Aligned_cols=226 Identities=18% Similarity=0.241 Sum_probs=165.2
Q ss_pred ccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCC
Q 005511 378 VIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGS 457 (693)
Q Consensus 378 v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~ 457 (693)
++|.+..+..+...+.... .....++++|++||||+++|++++....+...+|+.+||+........+.++|.
T Consensus 141 lig~s~~~~~~~~~i~~~~-------~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~ 213 (441)
T PRK10365 141 MVGKSPAMQHLLSEIALVA-------PSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGH 213 (441)
T ss_pred eEecCHHHHHHHHHHhhcc-------CCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCC
Confidence 4555555555554443332 111359999999999999999999988777889999999988766566678887
Q ss_pred CCCC-cCcCccchhhHHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhc
Q 005511 458 PPGY-VGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKG 536 (693)
Q Consensus 458 ~~~~-~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~ 536 (693)
..+. .|... .-.+.+..+.+|+|||||++.+++..|..|+..++++.+...++......++++|++|+......
T Consensus 214 ~~~~~~~~~~--~~~g~~~~a~~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~--- 288 (441)
T PRK10365 214 EKGAFTGADK--RREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAE--- 288 (441)
T ss_pred CCCCcCCCCc--CCCCceeECCCCEEEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHH---
Confidence 5542 22211 11234556778999999999999999999999999998766554444455889999987543211
Q ss_pred ccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCc-EEEcCCC--CHHHHHHHHHHHHHHHHHHHhcCCCeEE
Q 005511 537 GRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDE-MIVFRQL--TKLEVKEIADIMLKEVFDRLKTKDIELQ 613 (693)
Q Consensus 537 ~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~-~v~f~~l--~~~~~~~i~~~~l~~~~~~~~~~~~~l~ 613 (693)
.....|+++|+.|+.. .+.++|+ ..+|+..+++.++.++...... ....
T Consensus 289 --------------------------~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~--~~~~ 340 (441)
T PRK10365 289 --------------------------VNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRK--AVKG 340 (441)
T ss_pred --------------------------HHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCC--CCCC
Confidence 1123388999999955 4778888 4579999999999887665422 1234
Q ss_pred eCHHHHHHHHHhccCCCCCcchHHHHHHHHHH
Q 005511 614 VTERFRERVVEEGYNPSYGARPLRRAIMRLLE 645 (693)
Q Consensus 614 ~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~ 645 (693)
+++++++.|..+.|++| .|+|++++++.+.
T Consensus 341 ~~~~a~~~L~~~~wpgN--~reL~~~~~~~~~ 370 (441)
T PRK10365 341 FTPQAMDLLIHYDWPGN--IRELENAVERAVV 370 (441)
T ss_pred cCHHHHHHHHhCCCCCH--HHHHHHHHHHHHH
Confidence 89999999999666655 9999999998764
No 185
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.68 E-value=1.8e-15 Score=156.93 Aligned_cols=180 Identities=18% Similarity=0.275 Sum_probs=126.8
Q ss_pred hccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhh
Q 005511 375 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 454 (693)
Q Consensus 375 ~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l 454 (693)
+.+++||++.++.+...+....... .+..+++|+||||||||++|+++|+.+ +.++...+.+....
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~----~~~~~~ll~Gp~G~GKT~la~~ia~~~---~~~~~~~~~~~~~~------- 68 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQ----EALDHLLLYGPPGLGKTTLAHIIANEM---GVNLKITSGPALEK------- 68 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcC----CCCCeEEEECCCCCCHHHHHHHHHHHh---CCCEEEeccchhcC-------
Confidence 4678999999999988886554221 122369999999999999999999987 33444333221111
Q ss_pred cCCCCCCcCcCccchhhHHHHc-CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCC--C-----CeeecCCeEEEEec
Q 005511 455 IGSPPGYVGYTEGGQLTEAVRR-RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSK--G-----RTVDFKNTLLIMTS 526 (693)
Q Consensus 455 ~g~~~~~~g~~~~~~l~~~~~~-~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~--~-----~~~~~~~~~iI~~t 526 (693)
...+...+.. ..+.+|||||++.+++..++.|+.+|+++.....- + .....+.+.+|.+|
T Consensus 69 ------------~~~l~~~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t 136 (305)
T TIGR00635 69 ------------PGDLAAILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGAT 136 (305)
T ss_pred ------------chhHHHHHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEec
Confidence 0122222222 34579999999999999999999999886533211 1 11233456777777
Q ss_pred CCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHHHHHHHHHHh
Q 005511 527 NVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLK 606 (693)
Q Consensus 527 n~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l~~~~~~~~ 606 (693)
|.... +.+++.+||..++.|.+++.+++.+++.+.+...
T Consensus 137 ~~~~~------------------------------------l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~----- 175 (305)
T TIGR00635 137 TRAGM------------------------------------LTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLL----- 175 (305)
T ss_pred CCccc------------------------------------cCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHh-----
Confidence 74432 6789999998889999999999999998766531
Q ss_pred cCCCeEEeCHHHHHHHHHh
Q 005511 607 TKDIELQVTERFRERVVEE 625 (693)
Q Consensus 607 ~~~~~l~~~~~~~~~l~~~ 625 (693)
+ +.++++++++|++.
T Consensus 176 --~--~~~~~~al~~ia~~ 190 (305)
T TIGR00635 176 --N--VEIEPEAALEIARR 190 (305)
T ss_pred --C--CCcCHHHHHHHHHH
Confidence 2 45899999999885
No 186
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.68 E-value=1.5e-15 Score=158.56 Aligned_cols=198 Identities=19% Similarity=0.266 Sum_probs=136.6
Q ss_pred HHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchh
Q 005511 370 MEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 449 (693)
Q Consensus 370 ~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~ 449 (693)
++..-+++++||+..++.+...+...... ..+..+++|+||||||||++|+++|+.+ +..+...+.+.+..
T Consensus 19 ~rP~~~~~~vG~~~~~~~l~~~l~~~~~~----~~~~~~~ll~GppG~GKT~la~~ia~~l---~~~~~~~~~~~~~~-- 89 (328)
T PRK00080 19 LRPKSLDEFIGQEKVKENLKIFIEAAKKR----GEALDHVLLYGPPGLGKTTLANIIANEM---GVNIRITSGPALEK-- 89 (328)
T ss_pred cCcCCHHHhcCcHHHHHHHHHHHHHHHhc----CCCCCcEEEECCCCccHHHHHHHHHHHh---CCCeEEEecccccC--
Confidence 34445678999999999998888765432 2233479999999999999999999997 44444433322211
Q ss_pred hhhhhcCCCCCCcCcCccchhhHHHHc-CCCEEEEEccCcccCHHHHHHHHHHhhcceeeC--CCC---C--eeecCCeE
Q 005511 450 TVSKLIGSPPGYVGYTEGGQLTEAVRR-RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTD--SKG---R--TVDFKNTL 521 (693)
Q Consensus 450 ~~~~l~g~~~~~~g~~~~~~l~~~~~~-~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~--~~~---~--~~~~~~~~ 521 (693)
...+...+.. ..++||||||++.+++..++.|+..|++..+.. ..+ . ....+.+.
T Consensus 90 -----------------~~~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~ 152 (328)
T PRK00080 90 -----------------PGDLAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFT 152 (328)
T ss_pred -----------------hHHHHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCce
Confidence 0122222222 346799999999999999999999998865321 111 1 11234577
Q ss_pred EEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHHHHHH
Q 005511 522 LIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEV 601 (693)
Q Consensus 522 iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l~~~ 601 (693)
+|++||.... ++++|.+||...+.|.+++.+++.+|+++.....
T Consensus 153 li~at~~~~~------------------------------------l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~ 196 (328)
T PRK00080 153 LIGATTRAGL------------------------------------LTSPLRDRFGIVQRLEFYTVEELEKIVKRSARIL 196 (328)
T ss_pred EEeecCCccc------------------------------------CCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHc
Confidence 8888874432 6789999998889999999999999998766531
Q ss_pred HHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHH
Q 005511 602 FDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIM 641 (693)
Q Consensus 602 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~ 641 (693)
+ +.++++++++|++. ..+. .|.+.+.++
T Consensus 197 -------~--~~~~~~~~~~ia~~-~~G~--pR~a~~~l~ 224 (328)
T PRK00080 197 -------G--VEIDEEGALEIARR-SRGT--PRIANRLLR 224 (328)
T ss_pred -------C--CCcCHHHHHHHHHH-cCCC--chHHHHHHH
Confidence 2 45899999999975 2222 354444444
No 187
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=1.4e-15 Score=168.92 Aligned_cols=201 Identities=21% Similarity=0.232 Sum_probs=152.7
Q ss_pred hhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCCCC-eEEECCCCChHHHHHHHHHHHHhcCCCCC---------------
Q 005511 31 NLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDVPD--------------- 94 (693)
Q Consensus 31 ~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~~~-vLl~Gp~GtGKT~la~~la~~l~~~~~~~--------------- 94 (693)
.|+++|||.+|++++|++..++.|...+......| +|||||+|+|||++|+.+|+.+.+.....
T Consensus 6 ~~~~kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~ 85 (614)
T PRK14971 6 VSARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFN 85 (614)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHh
Confidence 57899999999999999999999999998877777 68999999999999999999987532110
Q ss_pred CCCCceEEEEeccccccCCcccchHHHHHHHHHHHHHh----CCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC--
Q 005511 95 TIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQ----SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR-- 168 (693)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~----~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~-- 168 (693)
...+..++.+++... .....++.++..+.. +...|++|||+|.|. .+.++.|+..++.
T Consensus 86 ~~~~~n~~~ld~~~~--------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls--------~~a~naLLK~LEepp 149 (614)
T PRK14971 86 EQRSYNIHELDAASN--------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS--------QAAFNAFLKTLEEPP 149 (614)
T ss_pred cCCCCceEEeccccc--------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC--------HHHHHHHHHHHhCCC
Confidence 011233444443211 112345555555432 345699999999994 3478889999986
Q ss_pred CCcEEEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccC
Q 005511 169 GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRF 248 (693)
Q Consensus 169 ~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 248 (693)
...++|++|+... .+.+.+++|+..++|++++.++....++..+.+ .++.++++++..++..+.+.+
T Consensus 150 ~~tifIL~tt~~~-----kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~----egi~i~~~al~~La~~s~gdl---- 216 (614)
T PRK14971 150 SYAIFILATTEKH-----KILPTILSRCQIFDFNRIQVADIVNHLQYVASK----EGITAEPEALNVIAQKADGGM---- 216 (614)
T ss_pred CCeEEEEEeCCch-----hchHHHHhhhheeecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH----
Confidence 4577777777654 688999999999999999999999888877764 578899999999999987754
Q ss_pred CchhhhhHHHHHhh
Q 005511 249 LPDKAIDLIDEAGS 262 (693)
Q Consensus 249 ~~~~~~~ll~~a~~ 262 (693)
+.+...++..+.
T Consensus 217 --r~al~~Lekl~~ 228 (614)
T PRK14971 217 --RDALSIFDQVVS 228 (614)
T ss_pred --HHHHHHHHHHHH
Confidence 677777766544
No 188
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=4.9e-16 Score=171.51 Aligned_cols=192 Identities=21% Similarity=0.374 Sum_probs=132.5
Q ss_pred HHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccch
Q 005511 369 KMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMER 448 (693)
Q Consensus 369 ~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~ 448 (693)
+++...+.+++||+.+++.|..++...+. .+.+||+||+|+|||++|+++|+.+++.......-.|......
T Consensus 11 KyRP~~f~dIiGQe~~v~~L~~aI~~~rl--------~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~ 82 (725)
T PRK07133 11 KYRPKTFDDIVGQDHIVQTLKNIIKSNKI--------SHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIEN 82 (725)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHh
Confidence 45556678999999999999998875432 2458999999999999999999998654321100111111100
Q ss_pred -hhhhhhc-CCCCCCcCcCccchhhHHHHc----CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEE
Q 005511 449 -HTVSKLI-GSPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLL 522 (693)
Q Consensus 449 -~~~~~l~-g~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i 522 (693)
....+++ +...+..|..+.+.+.+.+.. +.+.|++|||+|.++...+++||+.||+ +..+++|
T Consensus 83 ~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEE-----------PP~~tif 151 (725)
T PRK07133 83 VNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEE-----------PPKHVIF 151 (725)
T ss_pred hcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhc-----------CCCceEE
Confidence 0000010 111122333334555555554 3467999999999999999999999998 4557788
Q ss_pred EEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHHHHHHH
Q 005511 523 IMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVF 602 (693)
Q Consensus 523 I~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l~~~~ 602 (693)
|++|+.... +.+.+++|| ..+.|.+++.+++.+.+...+...
T Consensus 152 ILaTte~~K------------------------------------Ll~TI~SRc-q~ieF~~L~~eeI~~~L~~il~ke- 193 (725)
T PRK07133 152 ILATTEVHK------------------------------------IPLTILSRV-QRFNFRRISEDEIVSRLEFILEKE- 193 (725)
T ss_pred EEEcCChhh------------------------------------hhHHHHhhc-eeEEccCCCHHHHHHHHHHHHHHc-
Confidence 888863332 678999999 799999999999999987766532
Q ss_pred HHHhcCCCeEEeCHHHHHHHHHh
Q 005511 603 DRLKTKDIELQVTERFRERVVEE 625 (693)
Q Consensus 603 ~~~~~~~~~l~~~~~~~~~l~~~ 625 (693)
| +.+++++++.++..
T Consensus 194 ------g--I~id~eAl~~LA~l 208 (725)
T PRK07133 194 ------N--ISYEKNALKLIAKL 208 (725)
T ss_pred ------C--CCCCHHHHHHHHHH
Confidence 3 34788888888774
No 189
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.67 E-value=6.6e-16 Score=177.97 Aligned_cols=183 Identities=21% Similarity=0.334 Sum_probs=129.8
Q ss_pred CccCCHHHHHHHHHHHhc------CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEecccccc-----
Q 005511 43 PVVGRQPQIERVVQILGR------RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVA----- 111 (693)
Q Consensus 43 ~iiG~~~~~~~l~~~l~~------~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~----- 111 (693)
+++|++++++.+.+++.. ..+++++|+||||||||++|+++|+.+ +.+++.++++....
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l----------~~~~~~i~~~~~~~~~~i~ 390 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL----------NRKFVRFSLGGVRDEAEIR 390 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh----------cCCeEEEeCCCcccHHHHc
Confidence 489999999998886542 234579999999999999999999998 56677776543221
Q ss_pred --CCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC-----------------CCcE
Q 005511 112 --GTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR-----------------GELQ 172 (693)
Q Consensus 112 --~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~-----------------~~v~ 172 (693)
...+.|.....+...+..+....| |+||||+|.+.+... + +..++|.++++. ..++
T Consensus 391 g~~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~--~--~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~ 465 (775)
T TIGR00763 391 GHRRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFR--G--DPASALLEVLDPEQNNAFSDHYLDVPFDLSKVI 465 (775)
T ss_pred CCCCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccC--C--CHHHHHHHhcCHHhcCccccccCCceeccCCEE
Confidence 123445545556666666654555 889999999975321 1 123445554431 3578
Q ss_pred EEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHH-hHhhh-----cCcccChHHHHHHHHhhhhhhc
Q 005511 173 CIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRE-RYEIH-----HKLRYTDEALVSAAQLSYQYIS 245 (693)
Q Consensus 173 vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~-~~~~~-----~~~~~~~~~l~~l~~~~~~~~~ 245 (693)
+|+|||... .+++++++||..|.|+.|+.+++.+|++.++. +.... ..+.++++++..+++...+..+
T Consensus 466 ~I~TtN~~~-----~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g 539 (775)
T TIGR00763 466 FIATANSID-----TIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAG 539 (775)
T ss_pred EEEecCCch-----hCCHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcC
Confidence 899999876 68999999999999999999999999987652 21111 2457899999988885444333
No 190
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=2.7e-16 Score=171.62 Aligned_cols=207 Identities=18% Similarity=0.244 Sum_probs=137.1
Q ss_pred HHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCc----ceeeecccc
Q 005511 369 KMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE----AMIRLDMSE 444 (693)
Q Consensus 369 ~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~----~~~~~~~~~ 444 (693)
+++..-+.+++||+.+++.|...+...+ ..+.+||+||+|||||++|+++|+.+++... ++..+....
T Consensus 9 KYRP~tFddIIGQe~vv~~L~~ai~~~r--------l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr 80 (709)
T PRK08691 9 KWRPKTFADLVGQEHVVKALQNALDEGR--------LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCT 80 (709)
T ss_pred HhCCCCHHHHcCcHHHHHHHHHHHHcCC--------CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHH
Confidence 4555667899999999999999887542 2245899999999999999999999865321 111111000
Q ss_pred ccchhhhhhhcC-CCCCCcCcCccchhhHHHHc----CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCC
Q 005511 445 FMERHTVSKLIG-SPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKN 519 (693)
Q Consensus 445 ~~~~~~~~~l~g-~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~ 519 (693)
........+++- ......|....+.+.+.+.. +.+.|+||||+|+++...+|.||+.||+ ...+
T Consensus 81 ~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEE-----------Pp~~ 149 (709)
T PRK08691 81 QIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEE-----------PPEH 149 (709)
T ss_pred HHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHh-----------CCCC
Confidence 000000001100 00111222222333333322 3457999999999999999999999997 3457
Q ss_pred eEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHHHH
Q 005511 520 TLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLK 599 (693)
Q Consensus 520 ~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l~ 599 (693)
+.||++||.... +.+.+++|| ..+.|.+++.+++...+...+.
T Consensus 150 v~fILaTtd~~k------------------------------------L~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~ 192 (709)
T PRK08691 150 VKFILATTDPHK------------------------------------VPVTVLSRC-LQFVLRNMTAQQVADHLAHVLD 192 (709)
T ss_pred cEEEEEeCCccc------------------------------------cchHHHHHH-hhhhcCCCCHHHHHHHHHHHHH
Confidence 788888874433 567889999 8899999999999998887665
Q ss_pred HHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHHH
Q 005511 600 EVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRL 643 (693)
Q Consensus 600 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~ 643 (693)
.. | +.++++++.+|++.+ . .+.|.+.+.+++.
T Consensus 193 kE-------g--i~id~eAL~~Ia~~A-~--GslRdAlnLLDqa 224 (709)
T PRK08691 193 SE-------K--IAYEPPALQLLGRAA-A--GSMRDALSLLDQA 224 (709)
T ss_pred Hc-------C--CCcCHHHHHHHHHHh-C--CCHHHHHHHHHHH
Confidence 32 4 348999999999852 2 2355555555443
No 191
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=6e-16 Score=166.81 Aligned_cols=206 Identities=17% Similarity=0.239 Sum_probs=137.6
Q ss_pred HHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCc--------ceeee
Q 005511 369 KMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE--------AMIRL 440 (693)
Q Consensus 369 ~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~--------~~~~~ 440 (693)
+++..-+.+++||+.+++.|..++...+. .+++||+||+|||||++|+++|+.+.+... ++..+
T Consensus 14 kyRP~~f~dliGq~~vv~~L~~ai~~~ri--------~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C 85 (507)
T PRK06645 14 KYRPSNFAELQGQEVLVKVLSYTILNDRL--------AGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC 85 (507)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHHcCCC--------CceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC
Confidence 34555678899999999988887765431 246999999999999999999999854321 11111
Q ss_pred -ccccccchhhhhhhcC-CCCCCcCcCccchhhHHHHc----CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCe
Q 005511 441 -DMSEFMERHTVSKLIG-SPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRT 514 (693)
Q Consensus 441 -~~~~~~~~~~~~~l~g-~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~ 514 (693)
.|..+.. ....+++- ......|..+.+.+.+.+.. +.+.|+||||++.++...++.|++.||+
T Consensus 86 ~~C~~i~~-~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEe---------- 154 (507)
T PRK06645 86 TNCISFNN-HNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEE---------- 154 (507)
T ss_pred hHHHHHhc-CCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhh----------
Confidence 1111110 00001100 00112233333444444443 3467999999999999999999999997
Q ss_pred eecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHH
Q 005511 515 VDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIA 594 (693)
Q Consensus 515 ~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~ 594 (693)
+..+++||++|+.... +.+.+.+|| ..+.|.+++.+++.+++
T Consensus 155 -pp~~~vfI~aTte~~k------------------------------------I~~tI~SRc-~~~ef~~ls~~el~~~L 196 (507)
T PRK06645 155 -PPPHIIFIFATTEVQK------------------------------------IPATIISRC-QRYDLRRLSFEEIFKLL 196 (507)
T ss_pred -cCCCEEEEEEeCChHH------------------------------------hhHHHHhcc-eEEEccCCCHHHHHHHH
Confidence 3557788888763332 567899999 89999999999999999
Q ss_pred HHHHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHHH
Q 005511 595 DIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRL 643 (693)
Q Consensus 595 ~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~ 643 (693)
...++.. | +.++++++++|+.. .. .+.|..-+.++++
T Consensus 197 ~~i~~~e-------g--i~ie~eAL~~Ia~~-s~--GslR~al~~Ldka 233 (507)
T PRK06645 197 EYITKQE-------N--LKTDIEALRIIAYK-SE--GSARDAVSILDQA 233 (507)
T ss_pred HHHHHHc-------C--CCCCHHHHHHHHHH-cC--CCHHHHHHHHHHH
Confidence 8877632 3 34889999998874 22 2355555555543
No 192
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=4.2e-15 Score=165.75 Aligned_cols=201 Identities=20% Similarity=0.217 Sum_probs=147.0
Q ss_pred hhhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCCCC-eEEECCCCChHHHHHHHHHHHHhcCCC-CC-------------
Q 005511 30 TNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDV-PD------------- 94 (693)
Q Consensus 30 ~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~~~-vLl~Gp~GtGKT~la~~la~~l~~~~~-~~------------- 94 (693)
..|.++|||.+|++++|++..++.|..++......| +||+||+|+|||++|+.+|+.+.+... +.
T Consensus 4 ~~l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i 83 (585)
T PRK14950 4 QVLYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAI 83 (585)
T ss_pred HHHHHHhCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHH
Confidence 458899999999999999999999999888766655 589999999999999999999975321 10
Q ss_pred -CCCCceEEEEeccccccCCcccchHHHHHHHHHHHHH----hCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC-
Q 005511 95 -TIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR- 168 (693)
Q Consensus 95 -~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~----~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~- 168 (693)
...+..++.++.... .....++.+...+. .....|+||||+|.|.. +.++.|++.++.
T Consensus 84 ~~~~~~d~~~i~~~~~--------~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~--------~a~naLLk~LEep 147 (585)
T PRK14950 84 AEGSAVDVIEMDAASH--------TSVDDAREIIERVQFRPALARYKVYIIDEVHMLST--------AAFNALLKTLEEP 147 (585)
T ss_pred hcCCCCeEEEEecccc--------CCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH--------HHHHHHHHHHhcC
Confidence 001223444443211 11223444444432 23456999999999843 367788888875
Q ss_pred -CCcEEEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhccc
Q 005511 169 -GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDR 247 (693)
Q Consensus 169 -~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 247 (693)
...++|++++... .+.+.+++|+..+.|+.++..+...++...+.+ .++.++++++..++..+.|.
T Consensus 148 p~~tv~Il~t~~~~-----kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~----egl~i~~eal~~La~~s~Gd---- 214 (585)
T PRK14950 148 PPHAIFILATTEVH-----KVPATILSRCQRFDFHRHSVADMAAHLRKIAAA----EGINLEPGALEAIARAATGS---- 214 (585)
T ss_pred CCCeEEEEEeCChh-----hhhHHHHhccceeeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC----
Confidence 4567777776554 467889999999999999999999888877663 56789999999999988764
Q ss_pred CCchhhhhHHHHHh
Q 005511 248 FLPDKAIDLIDEAG 261 (693)
Q Consensus 248 ~~~~~~~~ll~~a~ 261 (693)
++.+...++...
T Consensus 215 --lr~al~~LekL~ 226 (585)
T PRK14950 215 --MRDAENLLQQLA 226 (585)
T ss_pred --HHHHHHHHHHHH
Confidence 367777777543
No 193
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=6.6e-16 Score=153.11 Aligned_cols=181 Identities=17% Similarity=0.283 Sum_probs=134.6
Q ss_pred CceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCCcCcCcc--chhhHHHHcCCCEEE
Q 005511 405 PIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVV 482 (693)
Q Consensus 405 ~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl 482 (693)
|..++||+||||||||++|+++|+.. +.+|+.+.++.+.++ |-|+.++ +.+|..+.+-.++++
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akea---ga~fInv~~s~lt~K------------WfgE~eKlv~AvFslAsKl~P~iI 190 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEA---GANFINVSVSNLTSK------------WFGEAQKLVKAVFSLASKLQPSII 190 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHc---CCCcceeeccccchh------------hHHHHHHHHHHHHhhhhhcCccee
Confidence 33469999999999999999999997 899999999998865 6676665 667788888889999
Q ss_pred EEccCcccC-------HH----HHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccc
Q 005511 483 LFDEIEKAH-------PD----VFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDS 551 (693)
Q Consensus 483 ~iDEid~l~-------~~----~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~ 551 (693)
||||+|.+- .+ .-+.+....++ -.+. +...+++..+||.+.+
T Consensus 191 FIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDG-l~s~------~~~rVlVlgATNRP~D-------------------- 243 (386)
T KOG0737|consen 191 FIDEVDSFLGQRRSTDHEATAMMKNEFMALWDG-LSSK------DSERVLVLGATNRPFD-------------------- 243 (386)
T ss_pred ehhhHHHHHhhcccchHHHHHHHHHHHHHHhcc-ccCC------CCceEEEEeCCCCCcc--------------------
Confidence 999999873 12 33444444443 2221 2235788889998876
Q ss_pred hHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCC
Q 005511 552 SYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSY 631 (693)
Q Consensus 552 ~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~ 631 (693)
++.++++|+...+..+-++.++..+|++-.|+... +.-.++ ++.++. ....|
T Consensus 244 ----------------lDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~-------~e~~vD---~~~iA~--~t~Gy 295 (386)
T KOG0737|consen 244 ----------------LDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEK-------LEDDVD---LDEIAQ--MTEGY 295 (386)
T ss_pred ----------------HHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccc-------cCcccC---HHHHHH--hcCCC
Confidence 78999999999999999999999999988886422 111122 234444 34456
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhc
Q 005511 632 GARPLRRAIMRLLEDSMAEKMLAR 655 (693)
Q Consensus 632 g~r~l~~~i~~~i~~~l~~~~l~~ 655 (693)
..++|++....+...++-+.+-.+
T Consensus 296 SGSDLkelC~~Aa~~~ire~~~~~ 319 (386)
T KOG0737|consen 296 SGSDLKELCRLAALRPIRELLVSE 319 (386)
T ss_pred cHHHHHHHHHHHhHhHHHHHHHhc
Confidence 778999988888887777776654
No 194
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.66 E-value=6.4e-16 Score=162.35 Aligned_cols=171 Identities=19% Similarity=0.304 Sum_probs=115.1
Q ss_pred hccccChHHHHHHHHHHHHHHhhcCCCCCC-CceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccc-----h
Q 005511 375 HKRVIGQDEAVKAISRAIRRARVGLKNPNR-PIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFME-----R 448 (693)
Q Consensus 375 ~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~-~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~-----~ 448 (693)
+++|+||+.+++.|.+++...+........ ..+.+||+||+|+|||++|+.+|+.+++.... ...|+.... .
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~--~~~Cg~C~~C~~~~~ 81 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD--EPGCGECRACRTVLA 81 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC--CCCCCCCHHHHHHhc
Confidence 568999999999999999876422111111 23469999999999999999999998654311 011111100 0
Q ss_pred hhhhh--hcCCCCCCcCcCccchhhHHHHc----CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEE
Q 005511 449 HTVSK--LIGSPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLL 522 (693)
Q Consensus 449 ~~~~~--l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i 522 (693)
....+ ++.+.....+..+.+.+.+.+.. +++.|+||||+|++++..+|.||+.||+ +..+++|
T Consensus 82 ~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEe-----------p~~~~~f 150 (394)
T PRK07940 82 GTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEE-----------PPPRTVW 150 (394)
T ss_pred CCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhc-----------CCCCCeE
Confidence 00001 11111112333333455555543 3357999999999999999999999998 3445667
Q ss_pred EEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHH
Q 005511 523 IMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIAD 595 (693)
Q Consensus 523 I~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~ 595 (693)
|++|+.... +.|.+++|| ..+.|.+++.+++.+.+.
T Consensus 151 IL~a~~~~~------------------------------------llpTIrSRc-~~i~f~~~~~~~i~~~L~ 186 (394)
T PRK07940 151 LLCAPSPED------------------------------------VLPTIRSRC-RHVALRTPSVEAVAEVLV 186 (394)
T ss_pred EEEECChHH------------------------------------ChHHHHhhC-eEEECCCCCHHHHHHHHH
Confidence 777664433 779999999 899999999999888775
No 195
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.66 E-value=1.2e-15 Score=161.37 Aligned_cols=207 Identities=20% Similarity=0.262 Sum_probs=136.3
Q ss_pred HHhccccChHHHHHHHHHHHHHHhhcC----CCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccch
Q 005511 373 TLHKRVIGQDEAVKAISRAIRRARVGL----KNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMER 448 (693)
Q Consensus 373 ~l~~~v~g~~~~~~~l~~~~~~~~~~~----~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~ 448 (693)
..+.++.|.+..++.+.+.+....... ..+-.+..++||+||||||||++|+++|+.+ +.+|+.+.++++...
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l---~~~~~~v~~~~l~~~ 195 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATFIRVVGSELVRK 195 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC---CCCEEecchHHHHHH
Confidence 345678899999999988886432110 0111222359999999999999999999987 667877766554422
Q ss_pred hhhhhhcCCCCCCcCcCcc--chhhHHHHcCCCEEEEEccCccc-----------CHHHHHHHHHHhhcceeeCCCCCee
Q 005511 449 HTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKA-----------HPDVFNMMLQILEDGRLTDSKGRTV 515 (693)
Q Consensus 449 ~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~l-----------~~~~~~~Ll~~le~~~~~~~~~~~~ 515 (693)
|.|.... +.++..++...++||||||+|.+ ++.++..+.+++..-.-. .
T Consensus 196 ------------~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~------~ 257 (364)
T TIGR01242 196 ------------YIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGF------D 257 (364)
T ss_pred ------------hhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCC------C
Confidence 4444322 44566666667899999999987 234555565555331000 0
Q ss_pred ecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhh--ccCcEEEcCCCCHHHHHHH
Q 005511 516 DFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLN--RLDEMIVFRQLTKLEVKEI 593 (693)
Q Consensus 516 ~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~--R~~~~v~f~~l~~~~~~~i 593 (693)
...+++||+|||.... +++++++ |||..+.|++|+.++..+|
T Consensus 258 ~~~~v~vI~ttn~~~~------------------------------------ld~al~r~grfd~~i~v~~P~~~~r~~I 301 (364)
T TIGR01242 258 PRGNVKVIAATNRPDI------------------------------------LDPALLRPGRFDRIIEVPLPDFEGRLEI 301 (364)
T ss_pred CCCCEEEEEecCChhh------------------------------------CChhhcCcccCceEEEeCCcCHHHHHHH
Confidence 1347889999996543 7788874 9999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHHHHHHHH
Q 005511 594 ADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSM 648 (693)
Q Consensus 594 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~~~l 648 (693)
++.++... ...-.++ ...++. ....+..++++..+..+...++
T Consensus 302 l~~~~~~~-------~l~~~~~---~~~la~--~t~g~sg~dl~~l~~~A~~~a~ 344 (364)
T TIGR01242 302 LKIHTRKM-------KLAEDVD---LEAIAK--MTEGASGADLKAICTEAGMFAI 344 (364)
T ss_pred HHHHHhcC-------CCCccCC---HHHHHH--HcCCCCHHHHHHHHHHHHHHHH
Confidence 97655321 1111122 345555 3445667788877776655543
No 196
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=5.2e-16 Score=169.91 Aligned_cols=192 Identities=18% Similarity=0.265 Sum_probs=130.1
Q ss_pred HHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCC----cceeeecccc
Q 005511 369 KMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE----EAMIRLDMSE 444 (693)
Q Consensus 369 ~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~----~~~~~~~~~~ 444 (693)
+++..-+++++||+.+++.+..++...+. .+.+||+||+|+|||++|+++|+.+++.. .++..++...
T Consensus 9 k~rP~~f~divGq~~v~~~L~~~i~~~~~--------~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~ 80 (527)
T PRK14969 9 KWRPKSFSELVGQEHVVRALTNALEQQRL--------HHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACL 80 (527)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHcCCC--------CEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 34555678899999999999888875432 23479999999999999999999986532 1222211000
Q ss_pred ccchhhhhhhcCC-CCCCcCcCccchhhHHHHc----CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCC
Q 005511 445 FMERHTVSKLIGS-PPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKN 519 (693)
Q Consensus 445 ~~~~~~~~~l~g~-~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~ 519 (693)
........+++.- ..+..+....+.+.+.+.. +.+.|+||||+|+++...+|.||+.||+ +..+
T Consensus 81 ~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEe-----------pp~~ 149 (527)
T PRK14969 81 EIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEE-----------PPEH 149 (527)
T ss_pred HHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhC-----------CCCC
Confidence 0000011111110 0112222222444444433 3357999999999999999999999998 3457
Q ss_pred eEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHHHH
Q 005511 520 TLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLK 599 (693)
Q Consensus 520 ~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l~ 599 (693)
++||++|+.... +.+.+++|| ..+.|.+++.+++.+.+...+.
T Consensus 150 ~~fIL~t~d~~k------------------------------------il~tI~SRc-~~~~f~~l~~~~i~~~L~~il~ 192 (527)
T PRK14969 150 VKFILATTDPQK------------------------------------IPVTVLSRC-LQFNLKQMPPPLIVSHLQHILE 192 (527)
T ss_pred EEEEEEeCChhh------------------------------------CchhHHHHH-HHHhcCCCCHHHHHHHHHHHHH
Confidence 788888864433 567799999 9999999999999988877665
Q ss_pred HHHHHHhcCCCeEEeCHHHHHHHHHh
Q 005511 600 EVFDRLKTKDIELQVTERFRERVVEE 625 (693)
Q Consensus 600 ~~~~~~~~~~~~l~~~~~~~~~l~~~ 625 (693)
.. |+ .+++++++.|+..
T Consensus 193 ~e-------gi--~~~~~al~~la~~ 209 (527)
T PRK14969 193 QE-------NI--PFDATALQLLARA 209 (527)
T ss_pred Hc-------CC--CCCHHHHHHHHHH
Confidence 31 43 4889999988874
No 197
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=1.4e-15 Score=167.85 Aligned_cols=204 Identities=20% Similarity=0.333 Sum_probs=137.8
Q ss_pred HHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCC----cceeeec-cc
Q 005511 369 KMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE----EAMIRLD-MS 443 (693)
Q Consensus 369 ~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~----~~~~~~~-~~ 443 (693)
+++...+.+++||+.+++.+.+++...+. .+.+||+||+|||||++|+.+|+.+++.. .|+..++ |.
T Consensus 9 k~rP~~f~~viGq~~v~~~L~~~i~~~~~--------~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~ 80 (559)
T PRK05563 9 KWRPQTFEDVVGQEHITKTLKNAIKQGKI--------SHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICK 80 (559)
T ss_pred HhCCCcHHhccCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHH
Confidence 45556788999999999999998876432 24589999999999999999999986532 1222211 11
Q ss_pred cccchhhhhhhcC-CCCCCcCcCccchhhHHHHc----CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecC
Q 005511 444 EFMERHTVSKLIG-SPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFK 518 (693)
Q Consensus 444 ~~~~~~~~~~l~g-~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~ 518 (693)
.+.. ....+++- ...+..|..+.+.+.+.+.. +.+.|+||||+|+++...+|.|++.||+ +..
T Consensus 81 ~i~~-g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEe-----------pp~ 148 (559)
T PRK05563 81 AITN-GSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEE-----------PPA 148 (559)
T ss_pred HHhc-CCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcC-----------CCC
Confidence 1100 00000000 00112233333455555543 3467999999999999999999999998 456
Q ss_pred CeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHHH
Q 005511 519 NTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIML 598 (693)
Q Consensus 519 ~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l 598 (693)
+++||++|+.... +.+.+.+|| ..+.|.+++.+++...+...+
T Consensus 149 ~~ifIlatt~~~k------------------------------------i~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~ 191 (559)
T PRK05563 149 HVIFILATTEPHK------------------------------------IPATILSRC-QRFDFKRISVEDIVERLKYIL 191 (559)
T ss_pred CeEEEEEeCChhh------------------------------------CcHHHHhHh-eEEecCCCCHHHHHHHHHHHH
Confidence 7888888864332 678999999 789999999999999887766
Q ss_pred HHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHH
Q 005511 599 KEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIM 641 (693)
Q Consensus 599 ~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~ 641 (693)
+.. |+ .+++++++.++..+ . .+.|...+.++
T Consensus 192 ~~e-------gi--~i~~~al~~ia~~s-~--G~~R~al~~Ld 222 (559)
T PRK05563 192 DKE-------GI--EYEDEALRLIARAA-E--GGMRDALSILD 222 (559)
T ss_pred HHc-------CC--CCCHHHHHHHHHHc-C--CCHHHHHHHHH
Confidence 532 44 47889998888742 1 23555544444
No 198
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.66 E-value=1.3e-15 Score=163.58 Aligned_cols=188 Identities=21% Similarity=0.326 Sum_probs=132.9
Q ss_pred HHHHHhccccChHHHHHH---HHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeecccccc
Q 005511 370 MEETLHKRVIGQDEAVKA---ISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFM 446 (693)
Q Consensus 370 ~~~~l~~~v~g~~~~~~~---l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~ 446 (693)
++...+++++||+..+.. +.+.+.... .++++|+||||||||++|+.+|+.+ +.+|+.+++....
T Consensus 6 ~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~---------~~~ilL~GppGtGKTtLA~~ia~~~---~~~~~~l~a~~~~ 73 (413)
T PRK13342 6 MRPKTLDEVVGQEHLLGPGKPLRRMIEAGR---------LSSMILWGPPGTGKTTLARIIAGAT---DAPFEALSAVTSG 73 (413)
T ss_pred hCCCCHHHhcCcHHHhCcchHHHHHHHcCC---------CceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeccccc
Confidence 333445679999998766 666664321 2369999999999999999999987 5677777654221
Q ss_pred chhhhhhhcCCCCCCcCcCccchhhHHHH----cCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEE
Q 005511 447 ERHTVSKLIGSPPGYVGYTEGGQLTEAVR----RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLL 522 (693)
Q Consensus 447 ~~~~~~~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i 522 (693)
....+.+.+.+. ...+.||||||+|+++...++.|+..++++. +++
T Consensus 74 -----------------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~-------------iil 123 (413)
T PRK13342 74 -----------------VKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGT-------------ITL 123 (413)
T ss_pred -----------------HHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcCc-------------EEE
Confidence 111122222221 2356899999999999999999999999864 346
Q ss_pred EEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHHHHHHH
Q 005511 523 IMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVF 602 (693)
Q Consensus 523 I~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l~~~~ 602 (693)
|.+|+.... ..+.+++++|| .++.|.+++.+++..++.+.+....
T Consensus 124 I~att~n~~----------------------------------~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~ 168 (413)
T PRK13342 124 IGATTENPS----------------------------------FEVNPALLSRA-QVFELKPLSEEDIEQLLKRALEDKE 168 (413)
T ss_pred EEeCCCChh----------------------------------hhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhh
Confidence 665542111 01678999999 8999999999999999988776532
Q ss_pred HHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHHH
Q 005511 603 DRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRL 643 (693)
Q Consensus 603 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~ 643 (693)
.++ +.+++++++.|.+.+ . ...|.+.+.++..
T Consensus 169 -----~~~-i~i~~~al~~l~~~s-~--Gd~R~aln~Le~~ 200 (413)
T PRK13342 169 -----RGL-VELDDEALDALARLA-N--GDARRALNLLELA 200 (413)
T ss_pred -----cCC-CCCCHHHHHHHHHhC-C--CCHHHHHHHHHHH
Confidence 133 468999999998853 2 3477777777755
No 199
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=8.4e-16 Score=167.31 Aligned_cols=190 Identities=20% Similarity=0.326 Sum_probs=128.9
Q ss_pred HHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCC----cceeeec-cc
Q 005511 369 KMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE----EAMIRLD-MS 443 (693)
Q Consensus 369 ~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~----~~~~~~~-~~ 443 (693)
+++...+++|+||+.+++.|.+++...+. .+.+||+||+|||||++|+++|+.+++.. .+|..+. |.
T Consensus 9 KyRP~sf~dIiGQe~v~~~L~~ai~~~ri--------~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~ 80 (624)
T PRK14959 9 RYRPQTFAEVAGQETVKAILSRAAQENRV--------APAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCR 80 (624)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHcCCC--------CceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHH
Confidence 45556678899999999999888875421 13699999999999999999999996532 1221111 00
Q ss_pred cccch--hhhhhhcCCCCCCcCcCccchhhHHHH----cCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeec
Q 005511 444 EFMER--HTVSKLIGSPPGYVGYTEGGQLTEAVR----RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDF 517 (693)
Q Consensus 444 ~~~~~--~~~~~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~ 517 (693)
.+... .++..+-+ ....+....+.+.+.+. .+...||||||+|+++...++.|++.||+ ..
T Consensus 81 ~i~~g~hpDv~eId~--a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEE-----------P~ 147 (624)
T PRK14959 81 KVTQGMHVDVVEIDG--ASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEE-----------PP 147 (624)
T ss_pred HHhcCCCCceEEEec--ccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhc-----------cC
Confidence 00000 00000101 11122222233433333 23468999999999999999999999998 23
Q ss_pred CCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHH
Q 005511 518 KNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIM 597 (693)
Q Consensus 518 ~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~ 597 (693)
.+++||++||.... +.+.+.+|| ..+.|.+++.+++.+++...
T Consensus 148 ~~~ifILaTt~~~k------------------------------------ll~TI~SRc-q~i~F~pLs~~eL~~~L~~i 190 (624)
T PRK14959 148 ARVTFVLATTEPHK------------------------------------FPVTIVSRC-QHFTFTRLSEAGLEAHLTKV 190 (624)
T ss_pred CCEEEEEecCChhh------------------------------------hhHHHHhhh-hccccCCCCHHHHHHHHHHH
Confidence 46788888874433 557889999 78999999999999888775
Q ss_pred HHHHHHHHhcCCCeEEeCHHHHHHHHHh
Q 005511 598 LKEVFDRLKTKDIELQVTERFRERVVEE 625 (693)
Q Consensus 598 l~~~~~~~~~~~~~l~~~~~~~~~l~~~ 625 (693)
+... + +.+++++++.|++.
T Consensus 191 l~~e-------g--i~id~eal~lIA~~ 209 (624)
T PRK14959 191 LGRE-------G--VDYDPAAVRLIARR 209 (624)
T ss_pred HHHc-------C--CCCCHHHHHHHHHH
Confidence 5421 3 34899999999884
No 200
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=6.3e-16 Score=167.36 Aligned_cols=192 Identities=20% Similarity=0.338 Sum_probs=130.5
Q ss_pred HHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCc----ceeeecccc
Q 005511 369 KMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE----AMIRLDMSE 444 (693)
Q Consensus 369 ~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~----~~~~~~~~~ 444 (693)
+++...+.+++||+.+++.+..++...+. .+.+||+||+|+|||++|+++|+.+.+.+. ++..++...
T Consensus 9 KyRP~~F~dIIGQe~iv~~L~~aI~~~rl--------~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr 80 (605)
T PRK05896 9 KYRPHNFKQIIGQELIKKILVNAILNNKL--------THAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCE 80 (605)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcCCC--------CceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHH
Confidence 45566778999999999999888764321 245999999999999999999999865331 121111000
Q ss_pred ccchhhhhhhcC-CCCCCcCcCccchhhHHHHc----CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCC
Q 005511 445 FMERHTVSKLIG-SPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKN 519 (693)
Q Consensus 445 ~~~~~~~~~l~g-~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~ 519 (693)
........+++- ...+..|..+.+.+.+.+.. +.+.|++|||+|.++...++.|++.||+ +..+
T Consensus 81 ~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEE-----------Pp~~ 149 (605)
T PRK05896 81 SINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEE-----------PPKH 149 (605)
T ss_pred HHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHh-----------CCCc
Confidence 000000001100 01112333333444444443 3357999999999999999999999998 3457
Q ss_pred eEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHHHH
Q 005511 520 TLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLK 599 (693)
Q Consensus 520 ~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l~ 599 (693)
+++|++|+.... +.+.+.+|| ..+.|.+++.+++...+...+.
T Consensus 150 tvfIL~Tt~~~K------------------------------------Ll~TI~SRc-q~ieF~~Ls~~eL~~~L~~il~ 192 (605)
T PRK05896 150 VVFIFATTEFQK------------------------------------IPLTIISRC-QRYNFKKLNNSELQELLKSIAK 192 (605)
T ss_pred EEEEEECCChHh------------------------------------hhHHHHhhh-hhcccCCCCHHHHHHHHHHHHH
Confidence 788888864332 668999999 7999999999999998877665
Q ss_pred HHHHHHhcCCCeEEeCHHHHHHHHHh
Q 005511 600 EVFDRLKTKDIELQVTERFRERVVEE 625 (693)
Q Consensus 600 ~~~~~~~~~~~~l~~~~~~~~~l~~~ 625 (693)
.. |+ .+++++++.++..
T Consensus 193 ke-------gi--~Is~eal~~La~l 209 (605)
T PRK05896 193 KE-------KI--KIEDNAIDKIADL 209 (605)
T ss_pred Hc-------CC--CCCHHHHHHHHHH
Confidence 31 33 4888999888874
No 201
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.66 E-value=1.4e-15 Score=170.96 Aligned_cols=190 Identities=18% Similarity=0.283 Sum_probs=132.1
Q ss_pred HHhccccChHHHHH---HHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchh
Q 005511 373 TLHKRVIGQDEAVK---AISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERH 449 (693)
Q Consensus 373 ~l~~~v~g~~~~~~---~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~ 449 (693)
.-+++++||+..+. .+.+.+... ..++++|+||||||||++|+++|+.+ +.+|+.+++....
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~~---------~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~~lna~~~~--- 89 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKAD---------RVGSLILYGPPGVGKTTLARIIANHT---RAHFSSLNAVLAG--- 89 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhcC---------CCceEEEECCCCCCHHHHHHHHHHHh---cCcceeehhhhhh---
Confidence 34567899999885 444444322 12369999999999999999999986 5667666654211
Q ss_pred hhhhhcCCCCCCcCcCccchhhHH----HH-cCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEE
Q 005511 450 TVSKLIGSPPGYVGYTEGGQLTEA----VR-RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIM 524 (693)
Q Consensus 450 ~~~~l~g~~~~~~g~~~~~~l~~~----~~-~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~ 524 (693)
..+.+..... +. ...+.+|||||+|.++...|+.|+..++++. +++|+
T Consensus 90 --------------i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~-------------IiLI~ 142 (725)
T PRK13341 90 --------------VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGT-------------ITLIG 142 (725)
T ss_pred --------------hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCce-------------EEEEE
Confidence 0000111111 11 1245799999999999999999999998864 34666
Q ss_pred ecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 005511 525 TSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDR 604 (693)
Q Consensus 525 ~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l~~~~~~ 604 (693)
+|+.... + .+.+++++|+ .++.|+|++.+++..++++.+......
T Consensus 143 aTTenp~---------------------~-------------~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~~~~~ 187 (725)
T PRK13341 143 ATTENPY---------------------F-------------EVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQDKERG 187 (725)
T ss_pred ecCCChH---------------------h-------------hhhhHhhccc-cceecCCCCHHHHHHHHHHHHHHHHhh
Confidence 6542211 0 0568999998 789999999999999999988765443
Q ss_pred HhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHHHH
Q 005511 605 LKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLL 644 (693)
Q Consensus 605 ~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i 644 (693)
+.. ..+.++++++++|++.+ ..++|.+.+.++.++
T Consensus 188 ~g~--~~v~I~deaL~~La~~s---~GD~R~lln~Le~a~ 222 (725)
T PRK13341 188 YGD--RKVDLEPEAEKHLVDVA---NGDARSLLNALELAV 222 (725)
T ss_pred cCC--cccCCCHHHHHHHHHhC---CCCHHHHHHHHHHHH
Confidence 322 23569999999999853 344888888888654
No 202
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=9.7e-16 Score=169.86 Aligned_cols=191 Identities=19% Similarity=0.301 Sum_probs=132.4
Q ss_pred HHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCc----ceeeec-cc
Q 005511 369 KMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE----AMIRLD-MS 443 (693)
Q Consensus 369 ~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~----~~~~~~-~~ 443 (693)
+++...+++++||+.+++.|.+.+...+ ..+.+||+||+|+|||++|+++|+.+++... ++..+. |.
T Consensus 9 k~RP~~f~~iiGq~~v~~~L~~~i~~~~--------~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~ 80 (576)
T PRK14965 9 KYRPQTFSDLTGQEHVSRTLQNAIDTGR--------VAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCV 80 (576)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHcCC--------CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHH
Confidence 4555667899999999999998887542 2245899999999999999999999865321 222111 11
Q ss_pred cccchhhhhhhc-CCCCCCcCcCccchhhHHHHc----CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecC
Q 005511 444 EFMERHTVSKLI-GSPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFK 518 (693)
Q Consensus 444 ~~~~~~~~~~l~-g~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~ 518 (693)
++..... .+++ -...+..|..+.+.+.+.++. +.+.|+||||+|+++...+|.|++.||+ +..
T Consensus 81 ~i~~g~~-~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEe-----------pp~ 148 (576)
T PRK14965 81 EITEGRS-VDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEE-----------PPP 148 (576)
T ss_pred HHhcCCC-CCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHc-----------CCC
Confidence 1110000 0000 000112233333455555543 3357999999999999999999999998 456
Q ss_pred CeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHHH
Q 005511 519 NTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIML 598 (693)
Q Consensus 519 ~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l 598 (693)
+++||++||.... +.+.+.+|| ..+.|.+++.+++...+...+
T Consensus 149 ~~~fIl~t~~~~k------------------------------------l~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~ 191 (576)
T PRK14965 149 HVKFIFATTEPHK------------------------------------VPITILSRC-QRFDFRRIPLQKIVDRLRYIA 191 (576)
T ss_pred CeEEEEEeCChhh------------------------------------hhHHHHHhh-hhhhcCCCCHHHHHHHHHHHH
Confidence 7889988874433 668899999 899999999999988887766
Q ss_pred HHHHHHHhcCCCeEEeCHHHHHHHHHh
Q 005511 599 KEVFDRLKTKDIELQVTERFRERVVEE 625 (693)
Q Consensus 599 ~~~~~~~~~~~~~l~~~~~~~~~l~~~ 625 (693)
++. |+ .++++++..|+..
T Consensus 192 ~~e-------gi--~i~~~al~~la~~ 209 (576)
T PRK14965 192 DQE-------GI--SISDAALALVARK 209 (576)
T ss_pred HHh-------CC--CCCHHHHHHHHHH
Confidence 542 43 4889999988874
No 203
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.66 E-value=5.9e-15 Score=139.88 Aligned_cols=207 Identities=16% Similarity=0.226 Sum_probs=154.8
Q ss_pred hhhhhhcCCCCCccCCHHHHHHHHHHHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCC---------CCCc--e
Q 005511 32 LTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDT---------IEGK--K 100 (693)
Q Consensus 32 l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~---------~~~~--~ 100 (693)
|.++|||.+++.++++++....+.........+|+++|||+|+||-|.+.++.+++....++.- ..+. +
T Consensus 3 Wvdkyrpksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklE 82 (351)
T KOG2035|consen 3 WVDKYRPKSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLE 82 (351)
T ss_pred chhhcCcchhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEE
Confidence 7899999999999999999999999888777899999999999999999999999976433210 0011 1
Q ss_pred EEEEecccc--ccCCcccchH-HHHHHHHHHHHHhC---------CCeEEEEeccchhhhCCCCCChHhHHHHHhhhhc-
Q 005511 101 VITLDMGLL--VAGTKYRGEF-EERLKKLMEEIKQS---------DEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA- 167 (693)
Q Consensus 101 ~~~~~~~~l--~~~~~~~g~~-~~~l~~~~~~~~~~---------~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~- 167 (693)
+-.++..-- ..++ ..|.. .-.+++++..+.+. .-.+++|.|+|.| ..+++.+|++.+|
T Consensus 83 istvsS~yHlEitPS-DaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~L--------T~dAQ~aLRRTMEk 153 (351)
T KOG2035|consen 83 ISTVSSNYHLEITPS-DAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADEL--------TRDAQHALRRTMEK 153 (351)
T ss_pred EEEecccceEEeChh-hcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhh--------hHHHHHHHHHHHHH
Confidence 111110000 0001 11211 12244455554332 2358999999999 4568999999998
Q ss_pred -CCCcEEEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcc
Q 005511 168 -RGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISD 246 (693)
Q Consensus 168 -~~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 246 (693)
.+...+|..+|... .+-+++++|+-.|.+|.|+.++...++...+++ .++.++.+.+..+++.+.|.+
T Consensus 154 Ys~~~RlIl~cns~S-----riIepIrSRCl~iRvpaps~eeI~~vl~~v~~k----E~l~lp~~~l~rIa~kS~~nL-- 222 (351)
T KOG2035|consen 154 YSSNCRLILVCNSTS-----RIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKK----EGLQLPKELLKRIAEKSNRNL-- 222 (351)
T ss_pred HhcCceEEEEecCcc-----cchhHHhhheeEEeCCCCCHHHHHHHHHHHHHH----hcccCcHHHHHHHHHHhcccH--
Confidence 57789999999876 688999999999999999999999999998875 778899999999999998876
Q ss_pred cCCchhhhhHHHHHhh
Q 005511 247 RFLPDKAIDLIDEAGS 262 (693)
Q Consensus 247 ~~~~~~~~~ll~~a~~ 262 (693)
+.|+-+++.++.
T Consensus 223 ----RrAllmlE~~~~ 234 (351)
T KOG2035|consen 223 ----RRALLMLEAVRV 234 (351)
T ss_pred ----HHHHHHHHHHHh
Confidence 666666665543
No 204
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.66 E-value=8.3e-15 Score=147.27 Aligned_cols=150 Identities=26% Similarity=0.319 Sum_probs=109.3
Q ss_pred EEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCCcCcC--------------------cc
Q 005511 408 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYT--------------------EG 467 (693)
Q Consensus 408 ~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~--------------------~~ 467 (693)
++||.||||||||++|+.+|+.+ +.+++.++|..-. ..++++|...+|.... ..
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~l---g~~~~~i~~~~~~---~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKR---DRPVMLINGDAEL---TTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVD 96 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh---CCCEEEEeCCccC---CHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecC
Confidence 59999999999999999999976 7899999988633 3345666532221110 01
Q ss_pred chhhHHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCC----ee-ecCCeEEEEecCCChhhhhhccccccc
Q 005511 468 GQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGR----TV-DFKNTLLIMTSNVGSSVIEKGGRRIGF 542 (693)
Q Consensus 468 ~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~----~~-~~~~~~iI~~tn~~~~~i~~~~~~~~f 542 (693)
+.+..+++ .+++|+|||++++++++++.|+.+|+++.+...++. .+ ..+++++|+|+|.....
T Consensus 97 g~l~~A~~--~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~---------- 164 (262)
T TIGR02640 97 NRLTLAVR--EGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYA---------- 164 (262)
T ss_pred chHHHHHH--cCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCcccc----------
Confidence 33444443 357999999999999999999999999988765421 22 34588999999954210
Q ss_pred ccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHH
Q 005511 543 DLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIM 597 (693)
Q Consensus 543 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~ 597 (693)
....++++|++|| ..+.++.++.++..+|+...
T Consensus 165 ---------------------g~~~l~~aL~~R~-~~i~i~~P~~~~e~~Il~~~ 197 (262)
T TIGR02640 165 ---------------------GVHETQDALLDRL-ITIFMDYPDIDTETAILRAK 197 (262)
T ss_pred ---------------------ceecccHHHHhhc-EEEECCCCCHHHHHHHHHHh
Confidence 0001578999999 78899999999999998654
No 205
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.66 E-value=8.7e-16 Score=138.23 Aligned_cols=120 Identities=32% Similarity=0.514 Sum_probs=97.3
Q ss_pred eEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCcccchHHHHHHHHHHHHHhCC-CeEEEEeccc
Q 005511 66 PCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSD-EIILFIDEVH 144 (693)
Q Consensus 66 vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~-~~vL~iDEid 144 (693)
+||+||||||||++++.+|+.+ +.+++.+++..+. ..+.+.....+..++..+.... |+||||||+|
T Consensus 1 ill~G~~G~GKT~l~~~la~~l----------~~~~~~i~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d 68 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL----------GFPFIEIDGSELI--SSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEID 68 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT----------TSEEEEEETTHHH--TSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGG
T ss_pred CEEECcCCCCeeHHHHHHHhhc----------ccccccccccccc--cccccccccccccccccccccccceeeeeccch
Confidence 6899999999999999999998 7889999998887 3456888899999999998887 9999999999
Q ss_pred hhhhCCCCCC---hHhHHHHHhhhhcC-----CCcEEEEEechHHHHhhhhcCHHHh-ccCC-ccccC
Q 005511 145 TLIGAGAAEG---AIDAANILKPSLAR-----GELQCIGATTLDEYRKHIEKDPALE-RRFQ-PVKVP 202 (693)
Q Consensus 145 ~l~~~~~~~~---~~~~~~~L~~~l~~-----~~v~vI~~t~~~~~~~~~~l~~~l~-~Rf~-~i~~~ 202 (693)
.+.+...... .....+.|...++. ..+.+|++||..+ .+++.+. +||. .+++|
T Consensus 69 ~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~-----~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 69 KLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPD-----KIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp GTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGG-----GSCHHHHSTTSEEEEEE-
T ss_pred hcccccccccccccccccceeeecccccccccccceeEEeeCChh-----hCCHhHHhCCCcEEEEcC
Confidence 9987752221 23345555555542 4589999999976 7999999 9998 77775
No 206
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=3e-15 Score=161.39 Aligned_cols=191 Identities=18% Similarity=0.273 Sum_probs=128.2
Q ss_pred HHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCc----ceeeec-cc
Q 005511 369 KMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE----AMIRLD-MS 443 (693)
Q Consensus 369 ~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~----~~~~~~-~~ 443 (693)
+++..-+.+++||+.+++.+...+...+. .+.+||+||+|+|||++|+++|+.+++... ++..++ |.
T Consensus 7 KyRP~~fdeiiGqe~v~~~L~~~I~~grl--------~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~ 78 (535)
T PRK08451 7 KYRPKHFDELIGQESVSKTLSLALDNNRL--------AHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQ 78 (535)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHHcCCC--------CeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHH
Confidence 45556678899999999999988865431 234799999999999999999999864321 221111 10
Q ss_pred cccchhhhhhh-cCCCCCCcCcCccchhhHHHHc----CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecC
Q 005511 444 EFMERHTVSKL-IGSPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFK 518 (693)
Q Consensus 444 ~~~~~~~~~~l-~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~ 518 (693)
..... ...++ -+......|..+.+.+...... +.+.|++|||+|.++.+.+|+||+.||+ +..
T Consensus 79 ~~~~~-~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEE-----------pp~ 146 (535)
T PRK08451 79 SALEN-RHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEE-----------PPS 146 (535)
T ss_pred HHhhc-CCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhh-----------cCC
Confidence 00000 00000 0010111122222222222221 3457999999999999999999999998 455
Q ss_pred CeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHHH
Q 005511 519 NTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIML 598 (693)
Q Consensus 519 ~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l 598 (693)
+++||++|+.... +.+++.+|| ..+.|.+++.+++...+...+
T Consensus 147 ~t~FIL~ttd~~k------------------------------------L~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il 189 (535)
T PRK08451 147 YVKFILATTDPLK------------------------------------LPATILSRT-QHFRFKQIPQNSIISHLKTIL 189 (535)
T ss_pred ceEEEEEECChhh------------------------------------CchHHHhhc-eeEEcCCCCHHHHHHHHHHHH
Confidence 7788888864332 678999999 899999999999998887666
Q ss_pred HHHHHHHhcCCCeEEeCHHHHHHHHHh
Q 005511 599 KEVFDRLKTKDIELQVTERFRERVVEE 625 (693)
Q Consensus 599 ~~~~~~~~~~~~~l~~~~~~~~~l~~~ 625 (693)
.. .|+ .++++++++|+..
T Consensus 190 ~~-------EGi--~i~~~Al~~Ia~~ 207 (535)
T PRK08451 190 EK-------EGV--SYEPEALEILARS 207 (535)
T ss_pred HH-------cCC--CCCHHHHHHHHHH
Confidence 53 244 4889999999874
No 207
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.65 E-value=1e-15 Score=178.59 Aligned_cols=188 Identities=15% Similarity=0.162 Sum_probs=126.0
Q ss_pred eEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhh---hhhh--cCC------------------------
Q 005511 407 ASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHT---VSKL--IGS------------------------ 457 (693)
Q Consensus 407 ~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~---~~~l--~g~------------------------ 457 (693)
.++||+||||||||.+|+++|... +.||+.+.++++.+... ..+. +|.
T Consensus 1631 KGILLiGPPGTGKTlLAKALA~es---~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~ 1707 (2281)
T CHL00206 1631 RGILVIGSIGTGRSYLVKYLATNS---YVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNA 1707 (2281)
T ss_pred CceEEECCCCCCHHHHHHHHHHhc---CCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcch
Confidence 369999999999999999999997 89999999999875310 0000 010
Q ss_pred CCCCcCcCcc----chhhHHHHcCCCEEEEEccCcccCHH-----HHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCC
Q 005511 458 PPGYVGYTEG----GQLTEAVRRRPYTVVLFDEIEKAHPD-----VFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNV 528 (693)
Q Consensus 458 ~~~~~g~~~~----~~l~~~~~~~~~~vl~iDEid~l~~~-----~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~ 528 (693)
..++.+..++ +.+++.+++..||||||||||.+... .++.|+..|++.... ....+++||+|||.
T Consensus 1708 ~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~------~s~~~VIVIAATNR 1781 (2281)
T CHL00206 1708 LTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCER------CSTRNILVIASTHI 1781 (2281)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhcccccc------CCCCCEEEEEeCCC
Confidence 0112233322 55788899999999999999999653 478888888752110 12347899999997
Q ss_pred ChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhh--ccCcEEEcCCCCHHHHHHHHHHHHHHHHHHHh
Q 005511 529 GSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLN--RLDEMIVFRQLTKLEVKEIADIMLKEVFDRLK 606 (693)
Q Consensus 529 ~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~--R~~~~v~f~~l~~~~~~~i~~~~l~~~~~~~~ 606 (693)
+.. ++|+|++ |||..|.++.|+..+..+++...+..
T Consensus 1782 PD~------------------------------------LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~t------ 1819 (2281)
T CHL00206 1782 PQK------------------------------------VDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYT------ 1819 (2281)
T ss_pred ccc------------------------------------CCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhh------
Confidence 765 8999995 99999999988887777776533211
Q ss_pred cCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHHHHHHHH
Q 005511 607 TKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSM 648 (693)
Q Consensus 607 ~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~~~l 648 (693)
.++.+.-+..-.+.++. -.+.+.+++|.+.+++++..++
T Consensus 1820 -kg~~L~~~~vdl~~LA~--~T~GfSGADLanLvNEAaliAi 1858 (2281)
T CHL00206 1820 -RGFHLEKKMFHTNGFGS--ITMGSNARDLVALTNEALSISI 1858 (2281)
T ss_pred -cCCCCCcccccHHHHHH--hCCCCCHHHHHHHHHHHHHHHH
Confidence 13322111111344554 3455666777777666554433
No 208
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.8e-15 Score=161.51 Aligned_cols=199 Identities=21% Similarity=0.319 Sum_probs=146.4
Q ss_pred CccCCHHHHHHHHHHHhc------CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEecccccc-----
Q 005511 43 PVVGRQPQIERVVQILGR------RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVA----- 111 (693)
Q Consensus 43 ~iiG~~~~~~~l~~~l~~------~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~----- 111 (693)
+-.|.+++++++.+.|.. ...+-+||+||||+|||+|++.+|+.+ +.+++.++.+.+..
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al----------~RkfvR~sLGGvrDEAEIR 393 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL----------GRKFVRISLGGVRDEAEIR 393 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh----------CCCEEEEecCccccHHHhc
Confidence 679999999999887653 223456799999999999999999999 88899998765532
Q ss_pred --CCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC-----------------CCcE
Q 005511 112 --GTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR-----------------GELQ 172 (693)
Q Consensus 112 --~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~-----------------~~v~ 172 (693)
...|.|....++-+-+..+...+| +++|||||.|..+ ..|+ -.++|+.+|+. .+|.
T Consensus 394 GHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss--~rGD--PaSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 394 GHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSS--FRGD--PASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred cccccccccCChHHHHHHHHhCCcCC-eEEeechhhccCC--CCCC--hHHHHHhhcCHhhcCchhhccccCccchhheE
Confidence 235677777777777777776666 8899999999543 2222 23445555531 3489
Q ss_pred EEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHH-HhHh-----hhcCcccChHHHHHHHHhhhhhhcc
Q 005511 173 CIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLR-ERYE-----IHHKLRYTDEALVSAAQLSYQYISD 246 (693)
Q Consensus 173 vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~-~~~~-----~~~~~~~~~~~l~~l~~~~~~~~~~ 246 (693)
+|+|+|..+ .++.+|+.|+.+|+++.++.+|..+|.+.++ .+.. ....+.++++++..+.+...+..+-
T Consensus 469 FiaTANsl~-----tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGV 543 (782)
T COG0466 469 FIATANSLD-----TIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGV 543 (782)
T ss_pred EEeecCccc-----cCChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhh
Confidence 999999876 6899999999999999999999999998754 2222 2234578999999988877666554
Q ss_pred cCCchhhhhHHHHHh
Q 005511 247 RFLPDKAIDLIDEAG 261 (693)
Q Consensus 247 ~~~~~~~~~ll~~a~ 261 (693)
|.+-+....+++.++
T Consensus 544 R~LeR~i~ki~RK~~ 558 (782)
T COG0466 544 RNLEREIAKICRKAA 558 (782)
T ss_pred hHHHHHHHHHHHHHH
Confidence 444444444444443
No 209
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=3.2e-15 Score=162.18 Aligned_cols=204 Identities=22% Similarity=0.295 Sum_probs=134.4
Q ss_pred HHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCc---ceeeec-ccc
Q 005511 369 KMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE---AMIRLD-MSE 444 (693)
Q Consensus 369 ~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~---~~~~~~-~~~ 444 (693)
+++..-+++++||+.+++.|..++...+. .+.+||+||||||||++|+++|+.+++.+. ++..+. |..
T Consensus 7 KyRP~~~~dvvGq~~v~~~L~~~i~~~~l--------~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~ 78 (504)
T PRK14963 7 RARPITFDEVVGQEHVKEVLLAALRQGRL--------GHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA 78 (504)
T ss_pred hhCCCCHHHhcChHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH
Confidence 44555678899999999999888876432 234699999999999999999999864321 111111 100
Q ss_pred ccchhhhhhh--cCCCCCCcCcCccchhhHHHHc----CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecC
Q 005511 445 FMERHTVSKL--IGSPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFK 518 (693)
Q Consensus 445 ~~~~~~~~~l--~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~ 518 (693)
+. .....++ ++. .+..+....+.+.+.+.. +.+.|+||||+|.++...++.|++.|++ +..
T Consensus 79 i~-~~~h~dv~el~~-~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEe-----------p~~ 145 (504)
T PRK14963 79 VR-RGAHPDVLEIDA-ASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEE-----------PPE 145 (504)
T ss_pred Hh-cCCCCceEEecc-cccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHh-----------CCC
Confidence 00 0000000 010 111222222344444432 3467999999999999999999999998 344
Q ss_pred CeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHHH
Q 005511 519 NTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIML 598 (693)
Q Consensus 519 ~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l 598 (693)
++++|+++|.... +.+.+.+|| ..+.|.+++.+++.+.+...+
T Consensus 146 ~t~~Il~t~~~~k------------------------------------l~~~I~SRc-~~~~f~~ls~~el~~~L~~i~ 188 (504)
T PRK14963 146 HVIFILATTEPEK------------------------------------MPPTILSRT-QHFRFRRLTEEEIAGKLRRLL 188 (504)
T ss_pred CEEEEEEcCChhh------------------------------------CChHHhcce-EEEEecCCCHHHHHHHHHHHH
Confidence 6788888764332 678899999 799999999999999988776
Q ss_pred HHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHH
Q 005511 599 KEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMR 642 (693)
Q Consensus 599 ~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~ 642 (693)
+.. |+ .++++++++|++. ..+ ..|.+.+.++.
T Consensus 189 ~~e-------gi--~i~~~Al~~ia~~-s~G--dlR~aln~Lek 220 (504)
T PRK14963 189 EAE-------GR--EAEPEALQLVARL-ADG--AMRDAESLLER 220 (504)
T ss_pred HHc-------CC--CCCHHHHHHHHHH-cCC--CHHHHHHHHHH
Confidence 532 44 4799999999874 222 24444444443
No 210
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.64 E-value=6.5e-15 Score=161.00 Aligned_cols=210 Identities=20% Similarity=0.159 Sum_probs=142.6
Q ss_pred CCCccCCHHHHHHHHHHHhc----CCCCCe-EEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccC---
Q 005511 41 LDPVVGRQPQIERVVQILGR----RTKNNP-CLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAG--- 112 (693)
Q Consensus 41 ~~~iiG~~~~~~~l~~~l~~----~~~~~v-Ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~--- 112 (693)
.+.|.||++++++|...+.. ..+.++ +++|+||||||++++.+++++.............+++++|..+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 46899999999998876653 445565 5999999999999999999885421111122467889988432211
Q ss_pred -----------Ccccc-hHHHHHHHHHHHHHh--CCCeEEEEeccchhhhCCCCCChHhHHHHHhh-hhcCCCcEEEEEe
Q 005511 113 -----------TKYRG-EFEERLKKLMEEIKQ--SDEIILFIDEVHTLIGAGAAEGAIDAANILKP-SLARGELQCIGAT 177 (693)
Q Consensus 113 -----------~~~~g-~~~~~l~~~~~~~~~--~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~-~l~~~~v~vI~~t 177 (693)
.+..| .....+..++..+.. ....||+|||||.|.... ...+.+++.. ......+.+|+++
T Consensus 834 YqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~----QDVLYnLFR~~~~s~SKLiLIGIS 909 (1164)
T PTZ00112 834 YQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT----QKVLFTLFDWPTKINSKLVLIAIS 909 (1164)
T ss_pred HHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH----HHHHHHHHHHhhccCCeEEEEEec
Confidence 11112 223445556655422 234699999999996531 1112222221 1234568899999
Q ss_pred chHHHHhhhhcCHHHhccCC--ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhhhh
Q 005511 178 TLDEYRKHIEKDPALERRFQ--PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAID 255 (693)
Q Consensus 178 ~~~~~~~~~~l~~~l~~Rf~--~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 255 (693)
|..++.. .+++.+++||. .+.|++|+.+|+.+||+..+... ...+++++++.+|+.++...++ .|.|++
T Consensus 910 NdlDLpe--rLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A----~gVLdDdAIELIArkVAq~SGD---ARKALD 980 (1164)
T PTZ00112 910 NTMDLPE--RLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENC----KEIIDHTAIQLCARKVANVSGD---IRKALQ 980 (1164)
T ss_pred Cchhcch--hhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhC----CCCCCHHHHHHHHHhhhhcCCH---HHHHHH
Confidence 9765433 46789999996 69999999999999999887642 3468999999999976654333 488999
Q ss_pred HHHHHhhH
Q 005511 256 LIDEAGSR 263 (693)
Q Consensus 256 ll~~a~~~ 263 (693)
+|+.|+..
T Consensus 981 ILRrAgEi 988 (1164)
T PTZ00112 981 ICRKAFEN 988 (1164)
T ss_pred HHHHHHhh
Confidence 99988764
No 211
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=1.6e-15 Score=166.99 Aligned_cols=205 Identities=18% Similarity=0.231 Sum_probs=138.9
Q ss_pred HHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCc---------ceee
Q 005511 369 KMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE---------AMIR 439 (693)
Q Consensus 369 ~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~---------~~~~ 439 (693)
+++...+.+++||+.+++.|.+.+...+ ..+.+||+||+|+|||++|+++|+.+++... ++..
T Consensus 17 KyRP~~f~dliGq~~~v~~L~~~~~~gr--------i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~ 88 (598)
T PRK09111 17 KYRPQTFDDLIGQEAMVRTLTNAFETGR--------IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGV 88 (598)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHHcCC--------CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcc
Confidence 4555667899999999999999887543 2246999999999999999999999865321 1111
Q ss_pred e-ccccccchhhhhhhcC-CCCCCcCcCccchhhHHHHc----CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCC
Q 005511 440 L-DMSEFMERHTVSKLIG-SPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGR 513 (693)
Q Consensus 440 ~-~~~~~~~~~~~~~l~g-~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~ 513 (693)
+ .|..+.. ....+++- .+.+..|..+.+.+.+.++. +.+.|+||||+|.++...+|.|++.||+
T Consensus 89 c~~C~~i~~-g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEe--------- 158 (598)
T PRK09111 89 GEHCQAIME-GRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEE--------- 158 (598)
T ss_pred cHHHHHHhc-CCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHh---------
Confidence 1 0111110 01111110 11223444444555555543 3468999999999999999999999998
Q ss_pred eeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHH
Q 005511 514 TVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEI 593 (693)
Q Consensus 514 ~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i 593 (693)
+..+++||++|+.... +.+.+.+|| ..+.|.+++.+++...
T Consensus 159 --Pp~~~~fIl~tte~~k------------------------------------ll~tI~SRc-q~~~f~~l~~~el~~~ 199 (598)
T PRK09111 159 --PPPHVKFIFATTEIRK------------------------------------VPVTVLSRC-QRFDLRRIEADVLAAH 199 (598)
T ss_pred --CCCCeEEEEEeCChhh------------------------------------hhHHHHhhe-eEEEecCCCHHHHHHH
Confidence 4567788888763332 457799999 8999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHH
Q 005511 594 ADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMR 642 (693)
Q Consensus 594 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~ 642 (693)
+...+... ++ .++++++++|+... . ...|.+.+.+++
T Consensus 200 L~~i~~ke-------gi--~i~~eAl~lIa~~a-~--Gdlr~al~~Ldk 236 (598)
T PRK09111 200 LSRIAAKE-------GV--EVEDEALALIARAA-E--GSVRDGLSLLDQ 236 (598)
T ss_pred HHHHHHHc-------CC--CCCHHHHHHHHHHc-C--CCHHHHHHHHHH
Confidence 87776532 33 48889998888742 1 235555555543
No 212
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=4.3e-16 Score=148.19 Aligned_cols=167 Identities=25% Similarity=0.385 Sum_probs=129.3
Q ss_pred HHHHHHhccccChHHHHHHHHHHHHHH--------hhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeee
Q 005511 369 KMEETLHKRVIGQDEAVKAISRAIRRA--------RVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRL 440 (693)
Q Consensus 369 ~~~~~l~~~v~g~~~~~~~l~~~~~~~--------~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~ 440 (693)
+....-+.++-|.+..+..|++.+... ..|..+| -+++|||+||||||.+|+++|+.. ...|+++
T Consensus 178 KaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpP----KGVIlyG~PGTGKTLLAKAVANqT---SATFlRv 250 (440)
T KOG0726|consen 178 KAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPP----KGVILYGEPGTGKTLLAKAVANQT---SATFLRV 250 (440)
T ss_pred cCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCC----CeeEEeCCCCCchhHHHHHHhccc---chhhhhh
Confidence 334456778999999999999988643 2343333 359999999999999999999875 6778888
Q ss_pred ccccccchhhhhhhcCCCCCCcCcCcc--chhhHHHHcCCCEEEEEccCcccC-----------HHHHHHHHHHhhccee
Q 005511 441 DMSEFMERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKAH-----------PDVFNMMLQILEDGRL 507 (693)
Q Consensus 441 ~~~~~~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~l~-----------~~~~~~Ll~~le~~~~ 507 (693)
-.+++..+ |.|...+ +++|..+....++|+||||||... .++|..+|.+|..-.-
T Consensus 251 vGseLiQk------------ylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldG 318 (440)
T KOG0726|consen 251 VGSELIQK------------YLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDG 318 (440)
T ss_pred hhHHHHHH------------HhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccC
Confidence 88877765 6666554 888999999999999999999882 3588888877743110
Q ss_pred eCCCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHh--hccCcEEEcCCC
Q 005511 508 TDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFL--NRLDEMIVFRQL 585 (693)
Q Consensus 508 ~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~--~R~~~~v~f~~l 585 (693)
.+ +..++-+|++||.-.. ++|+|+ +|+|..|.|+.+
T Consensus 319 Fd------srgDvKvimATnrie~------------------------------------LDPaLiRPGrIDrKIef~~p 356 (440)
T KOG0726|consen 319 FD------SRGDVKVIMATNRIET------------------------------------LDPALIRPGRIDRKIEFPLP 356 (440)
T ss_pred cc------ccCCeEEEEecccccc------------------------------------cCHhhcCCCccccccccCCC
Confidence 11 2358889999995443 889999 799999999999
Q ss_pred CHHHHHHHHHH
Q 005511 586 TKLEVKEIADI 596 (693)
Q Consensus 586 ~~~~~~~i~~~ 596 (693)
+......|+..
T Consensus 357 De~TkkkIf~I 367 (440)
T KOG0726|consen 357 DEKTKKKIFQI 367 (440)
T ss_pred chhhhceeEEE
Confidence 99988888743
No 213
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=2.3e-15 Score=162.74 Aligned_cols=205 Identities=25% Similarity=0.371 Sum_probs=135.6
Q ss_pred HHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCC----cceeee-ccc
Q 005511 369 KMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE----EAMIRL-DMS 443 (693)
Q Consensus 369 ~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~----~~~~~~-~~~ 443 (693)
+++...+.+++||+.+++.+...+...+. .+.+||+||+|+|||++|+++|+.+++.+ .|+..+ +|.
T Consensus 9 kyRP~~f~diiGq~~i~~~L~~~i~~~~i--------~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~ 80 (486)
T PRK14953 9 KYRPKFFKEVIGQEIVVRILKNAVKLQRV--------SHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCV 80 (486)
T ss_pred hhCCCcHHHccChHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHH
Confidence 34555678899999999999888865432 23578999999999999999999986421 122111 111
Q ss_pred cccchhhhhhhc-CCCCCCcCcCccchhhHHHHcC----CCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecC
Q 005511 444 EFMERHTVSKLI-GSPPGYVGYTEGGQLTEAVRRR----PYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFK 518 (693)
Q Consensus 444 ~~~~~~~~~~l~-g~~~~~~g~~~~~~l~~~~~~~----~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~ 518 (693)
.+... ...+++ ...+...|....+.+.+.+... .+.|++|||+|.++...++.|++.|++ +..
T Consensus 81 ~i~~g-~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEe-----------pp~ 148 (486)
T PRK14953 81 EIDKG-SFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEE-----------PPP 148 (486)
T ss_pred HHhcC-CCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhc-----------CCC
Confidence 11110 000110 0111123333334555555443 357999999999999999999999998 345
Q ss_pred CeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHHH
Q 005511 519 NTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIML 598 (693)
Q Consensus 519 ~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l 598 (693)
++++|++|+.... +.+++.+|| ..+.|.+++.+++..++...+
T Consensus 149 ~~v~Il~tt~~~k------------------------------------l~~tI~SRc-~~i~f~~ls~~el~~~L~~i~ 191 (486)
T PRK14953 149 RTIFILCTTEYDK------------------------------------IPPTILSRC-QRFIFSKPTKEQIKEYLKRIC 191 (486)
T ss_pred CeEEEEEECCHHH------------------------------------HHHHHHHhc-eEEEcCCCCHHHHHHHHHHHH
Confidence 6778877763222 557899999 789999999999999887766
Q ss_pred HHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHH
Q 005511 599 KEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMR 642 (693)
Q Consensus 599 ~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~ 642 (693)
+.. | +.++++++++|+.. .. .+.|.+.+.+++
T Consensus 192 k~e-------g--i~id~~al~~La~~-s~--G~lr~al~~Ldk 223 (486)
T PRK14953 192 NEE-------K--IEYEEKALDLLAQA-SE--GGMRDAASLLDQ 223 (486)
T ss_pred HHc-------C--CCCCHHHHHHHHHH-cC--CCHHHHHHHHHH
Confidence 532 4 35889999998874 22 235544444443
No 214
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.63 E-value=1.1e-14 Score=141.26 Aligned_cols=215 Identities=15% Similarity=0.181 Sum_probs=161.8
Q ss_pred CCCCCCccHHHHHhhhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCC
Q 005511 17 SSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTI 96 (693)
Q Consensus 17 ~~~~~~~~l~~~~~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~ 96 (693)
.+..++|.-..+..+|.+++||..+++++++++.+..+.+.......+|.|+|||||+|||+.+.+.|..+.+..-
T Consensus 16 ~~~~~~p~~~~~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~---- 91 (360)
T KOG0990|consen 16 MPMPYIPQSPQYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFYSPHP---- 91 (360)
T ss_pred CCCCCCCCCcccCCCCccCCCCchhhhHhcCCchhhHHHHhccCCCCCcccccCCCCCCCCCchhhhhhhhcCCCC----
Confidence 3445677778899999999999999999999999999999988888889999999999999999999999854200
Q ss_pred CCceEEEEeccccccCCcccchHHHHHHHHHHHHHh-------CCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC-
Q 005511 97 EGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQ-------SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR- 168 (693)
Q Consensus 97 ~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~-------~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~- 168 (693)
.+..+..++.++- ...+....++ ..|...+. ....++++||+|.+. .+++++|++.++.
T Consensus 92 ~~~m~lelnaSd~----rgid~vr~qi-~~fast~~~~~fst~~~fKlvILDEADaMT--------~~AQnALRRviek~ 158 (360)
T KOG0990|consen 92 TTSMLLELNASDD----RGIDPVRQQI-HLFASTQQPTTYSTHAAFKLVILDEADAMT--------RDAQNALRRVIEKY 158 (360)
T ss_pred chhHHHHhhccCc----cCCcchHHHH-HHHHhhccceeccccCceeEEEecchhHhh--------HHHHHHHHHHHHHh
Confidence 1122333443332 1222222322 23333332 256699999999994 5589999998873
Q ss_pred -CCcEEEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhccc
Q 005511 169 -GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDR 247 (693)
Q Consensus 169 -~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 247 (693)
..+.++..+|++. .+.|++++||+.+.|.+.+..+....+.++++ .....++++...++++++.|.+
T Consensus 159 t~n~rF~ii~n~~~-----ki~pa~qsRctrfrf~pl~~~~~~~r~shi~e----~e~~~~~~~~~~a~~r~s~gDm--- 226 (360)
T KOG0990|consen 159 TANTRFATISNPPQ-----KIHPAQQSRCTRFRFAPLTMAQQTERQSHIRE----SEQKETNPEGYSALGRLSVGDM--- 226 (360)
T ss_pred ccceEEEEeccChh-----hcCchhhcccccCCCCCCChhhhhhHHHHHHh----cchhhcCHHHHHHHHHHhHHHH---
Confidence 4577778888887 68999999999999999999988888888877 3567788888888888877764
Q ss_pred CCchhhhhHHHHHhhH
Q 005511 248 FLPDKAIDLIDEAGSR 263 (693)
Q Consensus 248 ~~~~~~~~ll~~a~~~ 263 (693)
+.+.+.|+.....
T Consensus 227 ---r~a~n~Lqs~~~~ 239 (360)
T KOG0990|consen 227 ---RVALNYLQSILKK 239 (360)
T ss_pred ---HHHHHHHHHHHHH
Confidence 5666666655443
No 215
>PRK06893 DNA replication initiation factor; Validated
Probab=99.62 E-value=1.1e-14 Score=143.43 Aligned_cols=180 Identities=12% Similarity=0.164 Sum_probs=117.7
Q ss_pred hcCCCCCccCCHHHH--HHHHHHHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCc
Q 005511 37 EEGKLDPVVGRQPQI--ERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTK 114 (693)
Q Consensus 37 ~~~~~~~iiG~~~~~--~~l~~~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (693)
++.+||+++|.++.. ..+.........+.++|+||||||||+|++++|+.+... +..+.+++.....
T Consensus 11 ~~~~fd~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~-------~~~~~y~~~~~~~---- 79 (229)
T PRK06893 11 DDETLDNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLN-------QRTAIYIPLSKSQ---- 79 (229)
T ss_pred CcccccccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCCeEEeeHHHhh----
Confidence 445899999765432 223333332233457899999999999999999987542 3445566543211
Q ss_pred ccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCCcEEEEEec-hHHHHhhhh-cCHHH
Q 005511 115 YRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATT-LDEYRKHIE-KDPAL 192 (693)
Q Consensus 115 ~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~t~-~~~~~~~~~-l~~~l 192 (693)
.....++..+.+. .+|+|||++.+... ........+.+....+.+..++|.+++ .+.. +. ..+.+
T Consensus 80 ------~~~~~~~~~~~~~--dlLilDDi~~~~~~--~~~~~~l~~l~n~~~~~~~~illits~~~p~~---l~~~~~~L 146 (229)
T PRK06893 80 ------YFSPAVLENLEQQ--DLVCLDDLQAVIGN--EEWELAIFDLFNRIKEQGKTLLLISADCSPHA---LSIKLPDL 146 (229)
T ss_pred ------hhhHHHHhhcccC--CEEEEeChhhhcCC--hHHHHHHHHHHHHHHHcCCcEEEEeCCCChHH---ccccchhH
Confidence 1112333443333 39999999988532 222234555566665655554444444 3431 12 35899
Q ss_pred hccCC---ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhh
Q 005511 193 ERRFQ---PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYI 244 (693)
Q Consensus 193 ~~Rf~---~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 244 (693)
.+|+. .+.+++|+.+++.+|++..+.. .++.+++++++.+++...|.+
T Consensus 147 ~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~----~~l~l~~~v~~~L~~~~~~d~ 197 (229)
T PRK06893 147 ASRLTWGEIYQLNDLTDEQKIIVLQRNAYQ----RGIELSDEVANFLLKRLDRDM 197 (229)
T ss_pred HHHHhcCCeeeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhccCCH
Confidence 99985 7899999999999999987763 578999999999999887654
No 216
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.62 E-value=1.4e-14 Score=161.72 Aligned_cols=211 Identities=20% Similarity=0.225 Sum_probs=143.0
Q ss_pred hhhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEecccc
Q 005511 30 TNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLL 109 (693)
Q Consensus 30 ~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l 109 (693)
.++.+.+||.+|++++|++..++++...+....+.+++|+|||||||||+|+.+++............+.+++.+++..+
T Consensus 142 ~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l 221 (615)
T TIGR02903 142 KSAQSLLRPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTL 221 (615)
T ss_pred hHHhhhcCcCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhc
Confidence 67788899999999999999999998888777788999999999999999999987764311111112456788887654
Q ss_pred ccCC-----cccchHH----HHHHHHHH----------HHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCC-
Q 005511 110 VAGT-----KYRGEFE----ERLKKLME----------EIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG- 169 (693)
Q Consensus 110 ~~~~-----~~~g~~~----~~l~~~~~----------~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~- 169 (693)
.... ...+... ......+. .+....+.+|||||++.|.+. .+..|...++.+
T Consensus 222 ~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~--------~Q~~Ll~~Le~~~ 293 (615)
T TIGR02903 222 RWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPL--------LQNKLLKVLEDKR 293 (615)
T ss_pred cCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHH--------HHHHHHHHHhhCe
Confidence 2100 0001000 00111111 111234569999999998433 555666555432
Q ss_pred -----------------------------CcEEEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhH
Q 005511 170 -----------------------------ELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERY 220 (693)
Q Consensus 170 -----------------------------~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~ 220 (693)
.+++|++|+.... .+++++++||..+.|++++.+++..|++..+.+
T Consensus 294 v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~----~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~- 368 (615)
T TIGR02903 294 VEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPE----EINPALRSRCAEVFFEPLTPEDIALIVLNAAEK- 368 (615)
T ss_pred EEeecceeccCCcccchhhhhhcccCccceEEEEEecccccc----ccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHH-
Confidence 2566666655332 578999999998999999999999999988764
Q ss_pred hhhcCcccChHHHHHHHHhhhhhhcccCCchhhhhHHHHHhhH
Q 005511 221 EIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSR 263 (693)
Q Consensus 221 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~a~~~ 263 (693)
.++.+++++++.+++.+. ..+++++.|..+...
T Consensus 369 ---~~v~ls~eal~~L~~ys~-------~gRraln~L~~~~~~ 401 (615)
T TIGR02903 369 ---INVHLAAGVEELIARYTI-------EGRKAVNILADVYGY 401 (615)
T ss_pred ---cCCCCCHHHHHHHHHCCC-------cHHHHHHHHHHHHHH
Confidence 345688888888877543 126777777666543
No 217
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=5.9e-15 Score=146.66 Aligned_cols=166 Identities=19% Similarity=0.273 Sum_probs=119.2
Q ss_pred ccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhc
Q 005511 376 KRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLI 455 (693)
Q Consensus 376 ~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 455 (693)
..||-.....++|...... -.+.+....|..+||||||||||||++|+-||... +..+-.+-.+++.
T Consensus 355 ~~ViL~psLe~Rie~lA~a-TaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~S---GlDYA~mTGGDVA--------- 421 (630)
T KOG0742|consen 355 EGVILHPSLEKRIEDLAIA-TANTKKHQAPFRNILFYGPPGTGKTMFARELARHS---GLDYAIMTGGDVA--------- 421 (630)
T ss_pred CCeecCHHHHHHHHHHHHH-hcccccccchhhheeeeCCCCCCchHHHHHHHhhc---CCceehhcCCCcc---------
Confidence 4556565555555544432 23344445677789999999999999999999985 4444333333332
Q ss_pred CCCCCCcCcCccchhhHHHHcCCCE-EEEEccCccc---------CH---HHHHHHHHHhhcceeeCCCCCeeecCCeEE
Q 005511 456 GSPPGYVGYTEGGQLTEAVRRRPYT-VVLFDEIEKA---------HP---DVFNMMLQILEDGRLTDSKGRTVDFKNTLL 522 (693)
Q Consensus 456 g~~~~~~g~~~~~~l~~~~~~~~~~-vl~iDEid~l---------~~---~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i 522 (693)
|.|..+.+....+|+..+++..| +|||||+|.+ +. ..+|+||--- |. ...++++
T Consensus 422 --PlG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRT--Gd---------qSrdivL 488 (630)
T KOG0742|consen 422 --PLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT--GD---------QSRDIVL 488 (630)
T ss_pred --ccchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHh--cc---------cccceEE
Confidence 23445555568899999887765 7899999986 22 2445544332 32 2358899
Q ss_pred EEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHHHHHHH
Q 005511 523 IMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVF 602 (693)
Q Consensus 523 I~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l~~~~ 602 (693)
+++||.+.+ |+.+.-+|||.+|.|+.|-.++..+++..+|+.+.
T Consensus 489 vlAtNrpgd------------------------------------lDsAV~DRide~veFpLPGeEERfkll~lYlnkyi 532 (630)
T KOG0742|consen 489 VLATNRPGD------------------------------------LDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYI 532 (630)
T ss_pred EeccCCccc------------------------------------hhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHh
Confidence 999997776 88999999999999999999999999999999886
Q ss_pred H
Q 005511 603 D 603 (693)
Q Consensus 603 ~ 603 (693)
.
T Consensus 533 ~ 533 (630)
T KOG0742|consen 533 L 533 (630)
T ss_pred c
Confidence 4
No 218
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.62 E-value=8e-15 Score=154.02 Aligned_cols=207 Identities=17% Similarity=0.231 Sum_probs=137.6
Q ss_pred HHHHHHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeecccc
Q 005511 365 DRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSE 444 (693)
Q Consensus 365 ~~~~~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~ 444 (693)
+.+..+...+.+.++|++++++.+..++... .++||.||||||||++|++||..+...+ +|..+.+.-
T Consensus 9 ~~i~~l~~~l~~~i~gre~vI~lll~aalag-----------~hVLL~GpPGTGKT~LAraLa~~~~~~~-~F~~~~~~f 76 (498)
T PRK13531 9 ERISRLSSALEKGLYERSHAIRLCLLAALSG-----------ESVFLLGPPGIAKSLIARRLKFAFQNAR-AFEYLMTRF 76 (498)
T ss_pred HHHHHHHHHHhhhccCcHHHHHHHHHHHccC-----------CCEEEECCCChhHHHHHHHHHHHhcccC-cceeeeeee
Confidence 3456788899999999999999888777544 3799999999999999999999874332 565555432
Q ss_pred ccchhhhhhhcCCCCCCcCcCccchhh----HHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCe
Q 005511 445 FMERHTVSKLIGSPPGYVGYTEGGQLT----EAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNT 520 (693)
Q Consensus 445 ~~~~~~~~~l~g~~~~~~g~~~~~~l~----~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~ 520 (693)
.. ..+++|+..-+..... +.+. +.+..+ .+||+|||.++++.+|+.||..|+++.++. ++.+...+.-
T Consensus 77 tt----p~DLfG~l~i~~~~~~-g~f~r~~~G~L~~A--~lLfLDEI~rasp~~QsaLLeam~Er~~t~-g~~~~~lp~r 148 (498)
T PRK13531 77 ST----PEEVFGPLSIQALKDE-GRYQRLTSGYLPEA--EIVFLDEIWKAGPAILNTLLTAINERRFRN-GAHEEKIPMR 148 (498)
T ss_pred cC----cHHhcCcHHHhhhhhc-CchhhhcCCccccc--cEEeecccccCCHHHHHHHHHHHHhCeEec-CCeEEeCCCc
Confidence 11 2366664211111101 1110 111112 399999999999999999999999999886 5666777766
Q ss_pred EEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCC-HHHHHHHHHHHHH
Q 005511 521 LLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLT-KLEVKEIADIMLK 599 (693)
Q Consensus 521 ~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~-~~~~~~i~~~~l~ 599 (693)
+++++||.-++ .+.+.+++++||-..+.+++++ .++..+++.....
T Consensus 149 fiv~ATN~LPE---------------------------------~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~~~ 195 (498)
T PRK13531 149 LLVTASNELPE---------------------------------ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQD 195 (498)
T ss_pred EEEEECCCCcc---------------------------------cCCchHHhHhhEEEEEECCCCCchHHHHHHHHcccc
Confidence 77777773221 0116789999996668999996 5666777754211
Q ss_pred ---------------HHHHHHhcCCCeEEeCHHHHHHHHHh
Q 005511 600 ---------------EVFDRLKTKDIELQVTERFRERVVEE 625 (693)
Q Consensus 600 ---------------~~~~~~~~~~~~l~~~~~~~~~l~~~ 625 (693)
++ ..+...-..+.+++.+.+++.+.
T Consensus 196 ~~~~~~~~~~vis~eel-~~lq~~v~~V~v~d~v~eyI~~L 235 (498)
T PRK13531 196 ENDNPVPASLQITDEEY-QQWQKEIGKITLPDHVFELIFQL 235 (498)
T ss_pred cccCCCcccCCCCHHHH-HHHHHHhcceeCCHHHHHHHHHH
Confidence 00 01111112456888888887764
No 219
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=6.4e-15 Score=158.47 Aligned_cols=189 Identities=19% Similarity=0.317 Sum_probs=128.2
Q ss_pred HHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCc-----ceeee-ccc
Q 005511 370 MEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE-----AMIRL-DMS 443 (693)
Q Consensus 370 ~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~-----~~~~~-~~~ 443 (693)
++..-+++++||+.+++.+...+...+. .+.+||+||+|+|||++|+++|+.+++... ++..+ +|.
T Consensus 11 yRP~~~~diiGq~~~v~~L~~~i~~~~i--------~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~ 82 (451)
T PRK06305 11 YRPQTFSEILGQDAVVAVLKNALRFNRA--------AHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCK 82 (451)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcCCC--------ceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHH
Confidence 4455678899999999999888875431 245999999999999999999999865321 11110 111
Q ss_pred cccchh--hhhhhcCCCCCCcCcCccchhhHHHH----cCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeec
Q 005511 444 EFMERH--TVSKLIGSPPGYVGYTEGGQLTEAVR----RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDF 517 (693)
Q Consensus 444 ~~~~~~--~~~~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~ 517 (693)
.+.... ....+-| ....|..+.+.+.+.+. .+.+.|+||||+|.++...++.|++.||+ +.
T Consensus 83 ~i~~~~~~d~~~i~g--~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEe-----------p~ 149 (451)
T PRK06305 83 EISSGTSLDVLEIDG--ASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEE-----------PP 149 (451)
T ss_pred HHhcCCCCceEEeec--cccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhc-----------CC
Confidence 111000 0111111 11223222233333332 24578999999999999999999999998 34
Q ss_pred CCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHH
Q 005511 518 KNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIM 597 (693)
Q Consensus 518 ~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~ 597 (693)
.+++||++||.... +.+.+.+|| ..+.|.+++.+++.+.+...
T Consensus 150 ~~~~~Il~t~~~~k------------------------------------l~~tI~sRc-~~v~f~~l~~~el~~~L~~~ 192 (451)
T PRK06305 150 QHVKFFLATTEIHK------------------------------------IPGTILSRC-QKMHLKRIPEETIIDKLALI 192 (451)
T ss_pred CCceEEEEeCChHh------------------------------------cchHHHHhc-eEEeCCCCCHHHHHHHHHHH
Confidence 46778888763322 668999999 89999999999999888766
Q ss_pred HHHHHHHHhcCCCeEEeCHHHHHHHHHh
Q 005511 598 LKEVFDRLKTKDIELQVTERFRERVVEE 625 (693)
Q Consensus 598 l~~~~~~~~~~~~~l~~~~~~~~~l~~~ 625 (693)
++. .|+ .+++++++.|+..
T Consensus 193 ~~~-------eg~--~i~~~al~~L~~~ 211 (451)
T PRK06305 193 AKQ-------EGI--ETSREALLPIARA 211 (451)
T ss_pred HHH-------cCC--CCCHHHHHHHHHH
Confidence 543 133 4889999998874
No 220
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.62 E-value=6.3e-15 Score=154.86 Aligned_cols=176 Identities=19% Similarity=0.205 Sum_probs=124.5
Q ss_pred CCCCccCCHHHHHHHHHHHhcCC----------CCCeEEECCCCChHHHHHHHHHHHHhcCCCC--C-----------CC
Q 005511 40 KLDPVVGRQPQIERVVQILGRRT----------KNNPCLIGEPGVGKTAIAEGLAQRIASGDVP--D-----------TI 96 (693)
Q Consensus 40 ~~~~iiG~~~~~~~l~~~l~~~~----------~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~--~-----------~~ 96 (693)
.|++++||+.+++.|.+++.... ++.+||+||||+|||++|+.+|+.+.+.... . ..
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~ 82 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAG 82 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcC
Confidence 48899999999999999998753 4568899999999999999999998764210 0 01
Q ss_pred CCceEEEEeccccccCCcccchHHHHHHHHHHHHHh----CCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCC--C
Q 005511 97 EGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQ----SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG--E 170 (693)
Q Consensus 97 ~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~----~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~--~ 170 (693)
.+..+..+..... ......++.++..+.. ++..|+||||+|.|.+. ..+.|++.++.. .
T Consensus 83 ~hpD~~~i~~~~~-------~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~--------aanaLLk~LEep~~~ 147 (394)
T PRK07940 83 THPDVRVVAPEGL-------SIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER--------AANALLKAVEEPPPR 147 (394)
T ss_pred CCCCEEEeccccc-------cCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH--------HHHHHHHHhhcCCCC
Confidence 1122333332211 1112346666666543 34569999999999543 678888888852 3
Q ss_pred cEEEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhh
Q 005511 171 LQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYI 244 (693)
Q Consensus 171 v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 244 (693)
.++|.+|+.+. .+.|+++|||..+.|++|+.++..+++.. + ..++++....++.++.|.+
T Consensus 148 ~~fIL~a~~~~-----~llpTIrSRc~~i~f~~~~~~~i~~~L~~---~------~~~~~~~a~~la~~s~G~~ 207 (394)
T PRK07940 148 TVWLLCAPSPE-----DVLPTIRSRCRHVALRTPSVEAVAEVLVR---R------DGVDPETARRAARASQGHI 207 (394)
T ss_pred CeEEEEECChH-----HChHHHHhhCeEEECCCCCHHHHHHHHHH---h------cCCCHHHHHHHHHHcCCCH
Confidence 44555555454 68999999999999999999998777762 1 1356777888888888874
No 221
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.62 E-value=2e-14 Score=141.06 Aligned_cols=113 Identities=26% Similarity=0.394 Sum_probs=88.1
Q ss_pred CEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhh--hcccccccccCcCcccchHHHH
Q 005511 479 YTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIE--KGGRRIGFDLDYDEKDSSYNRI 556 (693)
Q Consensus 479 ~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~--~~~~~~~f~~~~~~~~~~~~~l 556 (693)
+|||||||++.|+-+....|.+.||+--. .++|++||.+-..+. +...++|
T Consensus 292 pGVLFIDEvHmLDIE~FsFlnrAlEse~a------------PIii~AtNRG~~kiRGTd~~sPhG--------------- 344 (450)
T COG1224 292 PGVLFIDEVHMLDIECFSFLNRALESELA------------PIIILATNRGMTKIRGTDIESPHG--------------- 344 (450)
T ss_pred cceEEEechhhhhHHHHHHHHHHhhcccC------------cEEEEEcCCceeeecccCCcCCCC---------------
Confidence 57999999999999999999999998432 379999998866554 2223333
Q ss_pred HHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchH
Q 005511 557 KSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPL 636 (693)
Q Consensus 557 ~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l 636 (693)
++.+|++|+ -+|...||+.+++++|++...+.. .+.++++++++|..-+. ...|
T Consensus 345 -----------IP~DlLDRl-lII~t~py~~~EireIi~iRa~ee---------~i~l~~~Ale~L~~ig~-----etSL 398 (450)
T COG1224 345 -----------IPLDLLDRL-LIISTRPYSREEIREIIRIRAKEE---------DIELSDDALEYLTDIGE-----ETSL 398 (450)
T ss_pred -----------CCHhhhhhe-eEEecCCCCHHHHHHHHHHhhhhh---------ccccCHHHHHHHHhhch-----hhhH
Confidence 789999999 999999999999999997665432 36699999999998433 3456
Q ss_pred HHHHHHHHH
Q 005511 637 RRAIMRLLE 645 (693)
Q Consensus 637 ~~~i~~~i~ 645 (693)
+-+++ ++.
T Consensus 399 RYa~q-LL~ 406 (450)
T COG1224 399 RYAVQ-LLT 406 (450)
T ss_pred HHHHH-hcc
Confidence 66666 444
No 222
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.62 E-value=6.7e-15 Score=166.17 Aligned_cols=233 Identities=19% Similarity=0.231 Sum_probs=156.6
Q ss_pred CCCcccccccccCCCCCCCCCccHHHHHhhhhhhhhcCCCCCccCCHHHHHHHHHHHhc---------CCCCCeEEECCC
Q 005511 2 VGESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGR---------RTKNNPCLIGEP 72 (693)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~---------~~~~~vLl~Gp~ 72 (693)
|.+.+++|..+|...........+......|.+. ++||++.++.+...+.. .+..++||+|||
T Consensus 426 i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~--------ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~ 497 (758)
T PRK11034 426 IESVVARIARIPEKSVSQSDRDTLKNLGDRLKML--------VFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPT 497 (758)
T ss_pred HHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcce--------EeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCC
Confidence 3456777888887777766666666665555555 89999999999888763 223468999999
Q ss_pred CChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccC----------CcccchHHHHHHHHHHHHHhCCCeEEEEec
Q 005511 73 GVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAG----------TKYRGEFEERLKKLMEEIKQSDEIILFIDE 142 (693)
Q Consensus 73 GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~g~~~~~l~~~~~~~~~~~~~vL~iDE 142 (693)
|||||++|+.+|+.+ +.+++.++++.+... ..+.|.. .-..+...++..+.+|||+||
T Consensus 498 GvGKT~lAk~LA~~l----------~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~--~~g~L~~~v~~~p~sVlllDE 565 (758)
T PRK11034 498 GVGKTEVTVQLSKAL----------GIELLRFDMSEYMERHTVSRLIGAPPGYVGFD--QGGLLTDAVIKHPHAVLLLDE 565 (758)
T ss_pred CCCHHHHHHHHHHHh----------CCCcEEeechhhcccccHHHHcCCCCCccccc--ccchHHHHHHhCCCcEEEecc
Confidence 999999999999998 556788887665321 1122210 011233444556778999999
Q ss_pred cchhhhCCCCCChHhHHHHHhhhhcCC-------------CcEEEEEechHHH---H-----------------hhhhcC
Q 005511 143 VHTLIGAGAAEGAIDAANILKPSLARG-------------ELQCIGATTLDEY---R-----------------KHIEKD 189 (693)
Q Consensus 143 id~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~vI~~t~~~~~---~-----------------~~~~l~ 189 (693)
+|++.+ ++++.|+++++.+ +.++|+|||...- . -...+.
T Consensus 566 ieka~~--------~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~ 637 (758)
T PRK11034 566 IEKAHP--------DVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFT 637 (758)
T ss_pred HhhhhH--------HHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcC
Confidence 999954 4889999988754 3568888882200 0 001257
Q ss_pred HHHhccCC-ccccCCCCHHHHHHHHHHHHHhHh---h--hcCcccChHHHHHHHHhhhh-hhcccCCchhhhhHHHHHhh
Q 005511 190 PALERRFQ-PVKVPEPSVDETIQILKGLRERYE---I--HHKLRYTDEALVSAAQLSYQ-YISDRFLPDKAIDLIDEAGS 262 (693)
Q Consensus 190 ~~l~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~---~--~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~~~~~ll~~a~~ 262 (693)
|.|.+|++ .|.|++++.++..+|+...+..+. . ...+.+++++++.++..... ..+.|.+.+...+.+....+
T Consensus 638 pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la 717 (758)
T PRK11034 638 PEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLA 717 (758)
T ss_pred HHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHH
Confidence 99999998 899999999999999987665332 1 23457889999999865422 23333333333344443333
No 223
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.61 E-value=2.8e-14 Score=159.29 Aligned_cols=201 Identities=21% Similarity=0.295 Sum_probs=133.8
Q ss_pred HHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcC-------CCcceeeeccc
Q 005511 371 EETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFG-------SEEAMIRLDMS 443 (693)
Q Consensus 371 ~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~-------~~~~~~~~~~~ 443 (693)
+..-+..++||+.++..+...+... . + .+++|+||||||||++|++++..... .+.+|+.++|.
T Consensus 149 rp~~~~~iiGqs~~~~~l~~~ia~~-----~---~-~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~ 219 (615)
T TIGR02903 149 RPRAFSEIVGQERAIKALLAKVASP-----F---P-QHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGT 219 (615)
T ss_pred CcCcHHhceeCcHHHHHHHHHHhcC-----C---C-CeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEech
Confidence 3445678999999998876555221 1 1 25999999999999999999987621 35689999987
Q ss_pred cccch-h-hhhhhcCCCCC--Cc---------CcCccchhhHHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCC
Q 005511 444 EFMER-H-TVSKLIGSPPG--YV---------GYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDS 510 (693)
Q Consensus 444 ~~~~~-~-~~~~l~g~~~~--~~---------g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~ 510 (693)
.+... . ....++|.... +. |.. ....+.+..+.+++|||||++.+++..|+.|+..|+++.+...
T Consensus 220 ~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~--~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~ 297 (615)
T TIGR02903 220 TLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVP--EPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFS 297 (615)
T ss_pred hccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCC--chhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEee
Confidence 66311 0 11123332100 00 000 0111233456678999999999999999999999999875432
Q ss_pred CCC-----------------eeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHh
Q 005511 511 KGR-----------------TVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFL 573 (693)
Q Consensus 511 ~~~-----------------~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~ 573 (693)
.+. .....++++|++|+.... .++++|.
T Consensus 298 ~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~-----------------------------------~l~~aLr 342 (615)
T TIGR02903 298 SSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPE-----------------------------------EINPALR 342 (615)
T ss_pred cceeccCCcccchhhhhhcccCccceEEEEEecccccc-----------------------------------ccCHHHH
Confidence 210 001234666666653221 0678999
Q ss_pred hccCcEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHhcc
Q 005511 574 NRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGY 627 (693)
Q Consensus 574 ~R~~~~v~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~ 627 (693)
+|| ..+.|+|++.+++..|+++.+... + +.+++++++.|..+.|
T Consensus 343 SR~-~~i~~~pls~edi~~Il~~~a~~~-------~--v~ls~eal~~L~~ys~ 386 (615)
T TIGR02903 343 SRC-AEVFFEPLTPEDIALIVLNAAEKI-------N--VHLAAGVEELIARYTI 386 (615)
T ss_pred hce-eEEEeCCCCHHHHHHHHHHHHHHc-------C--CCCCHHHHHHHHHCCC
Confidence 999 578999999999999999876532 3 3488999999998544
No 224
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.61 E-value=5.1e-14 Score=150.12 Aligned_cols=211 Identities=23% Similarity=0.316 Sum_probs=140.5
Q ss_pred CCccCCHHHHHHHHHHHhc----CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEecccccc------
Q 005511 42 DPVVGRQPQIERVVQILGR----RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVA------ 111 (693)
Q Consensus 42 ~~iiG~~~~~~~l~~~l~~----~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~------ 111 (693)
++++||+++++.|...+.. ..+.+++++||||||||++++.+++.+...... ......++++++.....
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~-~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAED-RDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhc-cCCceEEEEEECCCCCCHHHHHH
Confidence 5799999999998888763 556789999999999999999999987531100 00115677788743321
Q ss_pred ---------CC--cccc-hHHHHHHHHHHHHH-hCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhh-----cCCCcEE
Q 005511 112 ---------GT--KYRG-EFEERLKKLMEEIK-QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSL-----ARGELQC 173 (693)
Q Consensus 112 ---------~~--~~~g-~~~~~l~~~~~~~~-~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l-----~~~~v~v 173 (693)
+. +..+ .....+..++..+. ...+.||+|||+|.+... ..+....|.... ....+.+
T Consensus 94 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~-----~~~~L~~l~~~~~~~~~~~~~v~l 168 (365)
T TIGR02928 94 ELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD-----DDDLLYQLSRARSNGDLDNAKVGV 168 (365)
T ss_pred HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC-----CcHHHHhHhccccccCCCCCeEEE
Confidence 00 0111 12233444555443 345779999999999622 112333343331 2356888
Q ss_pred EEEechHHHHhhhhcCHHHhccCC--ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCch
Q 005511 174 IGATTLDEYRKHIEKDPALERRFQ--PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPD 251 (693)
Q Consensus 174 I~~t~~~~~~~~~~l~~~l~~Rf~--~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 251 (693)
|+++|.+.+.. .+++.+.+||. .+.|++++.+++.+|++..++.. ..+..+++++++.++..+...- ..++
T Consensus 169 I~i~n~~~~~~--~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~--~~~~~~~~~~l~~i~~~~~~~~---Gd~R 241 (365)
T TIGR02928 169 IGISNDLKFRE--NLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKA--FYDGVLDDGVIPLCAALAAQEH---GDAR 241 (365)
T ss_pred EEEECCcchHh--hcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhh--ccCCCCChhHHHHHHHHHHHhc---CCHH
Confidence 99999876532 47889999994 79999999999999999877521 2334578888888777665332 2357
Q ss_pred hhhhHHHHHhhHHH
Q 005511 252 KAIDLIDEAGSRVR 265 (693)
Q Consensus 252 ~~~~ll~~a~~~~~ 265 (693)
.+.++|..|...+.
T Consensus 242 ~al~~l~~a~~~a~ 255 (365)
T TIGR02928 242 KAIDLLRVAGEIAE 255 (365)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888776543
No 225
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.61 E-value=8.4e-15 Score=160.82 Aligned_cols=204 Identities=19% Similarity=0.266 Sum_probs=133.9
Q ss_pred HHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCc----ceeeec-cc
Q 005511 369 KMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE----AMIRLD-MS 443 (693)
Q Consensus 369 ~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~----~~~~~~-~~ 443 (693)
+++...+.+++||+.+++.+...+...+. .+.+||+||+|+|||++|+++|+.+.+... ++..+. |.
T Consensus 9 kyRP~~f~diiGqe~iv~~L~~~i~~~~i--------~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~ 80 (563)
T PRK06647 9 KRRPRDFNSLEGQDFVVETLKHSIESNKI--------ANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCK 80 (563)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHH
Confidence 45556678999999999999988875432 235999999999999999999999865321 221110 10
Q ss_pred cccchh--hhhhhcCCCCCCcCcCccchhhHHHH----cCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeec
Q 005511 444 EFMERH--TVSKLIGSPPGYVGYTEGGQLTEAVR----RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDF 517 (693)
Q Consensus 444 ~~~~~~--~~~~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~ 517 (693)
.+.... .+..+-|. ...+..+.+.+.+.+. .+.+.|++|||++.++...+|.|++.||+ +.
T Consensus 81 ~i~~~~~~dv~~idga--s~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEe-----------pp 147 (563)
T PRK06647 81 SIDNDNSLDVIEIDGA--SNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEE-----------PP 147 (563)
T ss_pred HHHcCCCCCeEEecCc--ccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhcc-----------CC
Confidence 100000 00000010 0111111122322222 24567999999999999999999999997 45
Q ss_pred CCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHH
Q 005511 518 KNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIM 597 (693)
Q Consensus 518 ~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~ 597 (693)
.+++||++|+.... +.+++.+|| ..+.|.+++.+++.+.+...
T Consensus 148 ~~~vfI~~tte~~k------------------------------------L~~tI~SRc-~~~~f~~l~~~el~~~L~~i 190 (563)
T PRK06647 148 PYIVFIFATTEVHK------------------------------------LPATIKSRC-QHFNFRLLSLEKIYNMLKKV 190 (563)
T ss_pred CCEEEEEecCChHH------------------------------------hHHHHHHhc-eEEEecCCCHHHHHHHHHHH
Confidence 67888888763221 668899999 78999999999998888765
Q ss_pred HHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHH
Q 005511 598 LKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMR 642 (693)
Q Consensus 598 l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~ 642 (693)
+.. .|+ .++++++++|+.. ..+ ..|.+.+.+++
T Consensus 191 ~~~-------egi--~id~eAl~lLa~~-s~G--dlR~alslLdk 223 (563)
T PRK06647 191 CLE-------DQI--KYEDEALKWIAYK-STG--SVRDAYTLFDQ 223 (563)
T ss_pred HHH-------cCC--CCCHHHHHHHHHH-cCC--CHHHHHHHHHH
Confidence 543 243 4899999999874 222 25555555543
No 226
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=6.5e-15 Score=162.40 Aligned_cols=190 Identities=21% Similarity=0.326 Sum_probs=127.3
Q ss_pred HHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCC------------cc
Q 005511 369 KMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE------------EA 436 (693)
Q Consensus 369 ~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~------------~~ 436 (693)
+++...+++++||+.+++.|.+.+...+.. +.+||+||+|||||++|+++|+.+++.. .+
T Consensus 9 kyRP~~f~eivGQe~i~~~L~~~i~~~ri~--------ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~ 80 (620)
T PRK14954 9 KYRPSKFADITAQEHITHTIQNSLRMDRVG--------HGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEP 80 (620)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHcCCCC--------eeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCC
Confidence 455566789999999999998887654321 3599999999999999999999996532 11
Q ss_pred eeeec-cccccchh--hhhhhcCCCCCCcCcCccchhhHHHH----cCCCEEEEEccCcccCHHHHHHHHHHhhcceeeC
Q 005511 437 MIRLD-MSEFMERH--TVSKLIGSPPGYVGYTEGGQLTEAVR----RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTD 509 (693)
Q Consensus 437 ~~~~~-~~~~~~~~--~~~~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~ 509 (693)
+..+. |..+.... ++..+-| .+..+..+.+.+.+.+. .+.+.|++|||+|.++...+|.|++.||+
T Consensus 81 Cg~C~sC~~~~~g~~~n~~~~d~--~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEe----- 153 (620)
T PRK14954 81 CGECESCRDFDAGTSLNISEFDA--ASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEE----- 153 (620)
T ss_pred CccCHHHHHHhccCCCCeEEecc--cccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhC-----
Confidence 11110 00000000 0000101 01122222233333332 24467999999999999999999999998
Q ss_pred CCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHH
Q 005511 510 SKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLE 589 (693)
Q Consensus 510 ~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~ 589 (693)
+...++||++++.... +.+.+.+|+ .++.|.+++.++
T Consensus 154 ------Pp~~tv~IL~t~~~~k------------------------------------Ll~TI~SRc-~~vef~~l~~~e 190 (620)
T PRK14954 154 ------PPPHAIFIFATTELHK------------------------------------IPATIASRC-QRFNFKRIPLDE 190 (620)
T ss_pred ------CCCCeEEEEEeCChhh------------------------------------hhHHHHhhc-eEEecCCCCHHH
Confidence 3456778877753222 567899999 999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHh
Q 005511 590 VKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEE 625 (693)
Q Consensus 590 ~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~ 625 (693)
+...+...+... | +.++++++++|+..
T Consensus 191 i~~~L~~i~~~e-------g--i~I~~eal~~La~~ 217 (620)
T PRK14954 191 IQSQLQMICRAE-------G--IQIDADALQLIARK 217 (620)
T ss_pred HHHHHHHHHHHc-------C--CCCCHHHHHHHHHH
Confidence 998887665531 3 34889999988874
No 227
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=8e-15 Score=156.37 Aligned_cols=190 Identities=19% Similarity=0.269 Sum_probs=125.7
Q ss_pred HHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCC------------cc
Q 005511 369 KMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE------------EA 436 (693)
Q Consensus 369 ~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~------------~~ 436 (693)
+++...+++++||+.+++.|...+...+. .+.+||+||||+|||++|+++|+.+.+.. .+
T Consensus 9 k~RP~~~~eiiGq~~~~~~L~~~~~~~~~--------~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~ 80 (397)
T PRK14955 9 KYRPKKFADITAQEHITRTIQNSLRMGRV--------GHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEP 80 (397)
T ss_pred hcCCCcHhhccChHHHHHHHHHHHHhCCc--------ceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCC
Confidence 34555678999999999999888875432 23599999999999999999999996531 11
Q ss_pred eeeec-cccccchh--hhhhhcCCCCCCcCcCccchhhHHHHc----CCCEEEEEccCcccCHHHHHHHHHHhhcceeeC
Q 005511 437 MIRLD-MSEFMERH--TVSKLIGSPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTD 509 (693)
Q Consensus 437 ~~~~~-~~~~~~~~--~~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~ 509 (693)
+..+. |..+.... .+..+-| .+..+..+.+.+.+.+.. +...|+||||+|+++...++.|++.+++
T Consensus 81 c~~c~~c~~~~~~~~~n~~~~~~--~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEe----- 153 (397)
T PRK14955 81 CGECESCRDFDAGTSLNISEFDA--ASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEE----- 153 (397)
T ss_pred CCCCHHHHHHhcCCCCCeEeecc--cccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhc-----
Confidence 11110 00000000 0000101 011112222333333322 3467999999999999999999999997
Q ss_pred CCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHH
Q 005511 510 SKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLE 589 (693)
Q Consensus 510 ~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~ 589 (693)
+...++||++++.... +.+++.+|+ ..+.|.+++.++
T Consensus 154 ------p~~~t~~Il~t~~~~k------------------------------------l~~tl~sR~-~~v~f~~l~~~e 190 (397)
T PRK14955 154 ------PPPHAIFIFATTELHK------------------------------------IPATIASRC-QRFNFKRIPLEE 190 (397)
T ss_pred ------CCCCeEEEEEeCChHH------------------------------------hHHHHHHHH-HHhhcCCCCHHH
Confidence 3446677777652221 557899999 799999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHh
Q 005511 590 VKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEE 625 (693)
Q Consensus 590 ~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~ 625 (693)
+.+.+...++.. + +.+++++.++|+..
T Consensus 191 i~~~l~~~~~~~-------g--~~i~~~al~~l~~~ 217 (397)
T PRK14955 191 IQQQLQGICEAE-------G--ISVDADALQLIGRK 217 (397)
T ss_pred HHHHHHHHHHHc-------C--CCCCHHHHHHHHHH
Confidence 998887766531 3 44899999998874
No 228
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=7.5e-15 Score=157.81 Aligned_cols=164 Identities=24% Similarity=0.357 Sum_probs=127.2
Q ss_pred hccccChHHHHHHHHHHHHHHhhcCC----CCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhh
Q 005511 375 HKRVIGQDEAVKAISRAIRRARVGLK----NPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHT 450 (693)
Q Consensus 375 ~~~v~g~~~~~~~l~~~~~~~~~~~~----~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~ 450 (693)
|.++.|.+++++.+.+.+...+...+ ...-|++ +||+||||||||++|+++|-+. +.||+.+..+++.+.
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkG-vlLvGpPGTGKTLLAkAvAgEA---~VPFf~iSGS~FVem-- 222 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKG-VLLVGPPGTGKTLLAKAVAGEA---GVPFFSISGSDFVEM-- 222 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccc-eeEecCCCCCcHHHHHHHhccc---CCCceeccchhhhhh--
Confidence 56677888888887777754431111 1123444 9999999999999999999886 899999999998865
Q ss_pred hhhhcCCCCCCcCc--CccchhhHHHHcCCCEEEEEccCcccCH--------------HHHHHHHHHhhcceeeCCCCCe
Q 005511 451 VSKLIGSPPGYVGY--TEGGQLTEAVRRRPYTVVLFDEIEKAHP--------------DVFNMMLQILEDGRLTDSKGRT 514 (693)
Q Consensus 451 ~~~l~g~~~~~~g~--~~~~~l~~~~~~~~~~vl~iDEid~l~~--------------~~~~~Ll~~le~~~~~~~~~~~ 514 (693)
|+|. +..+.+|..+++..+||+||||+|.... ..+|+||..||...
T Consensus 223 ----------fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~-------- 284 (596)
T COG0465 223 ----------FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG-------- 284 (596)
T ss_pred ----------hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCC--------
Confidence 4443 4447899999988899999999998832 38899999998732
Q ss_pred eecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHh--hccCcEEEcCCCCHHHHHH
Q 005511 515 VDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFL--NRLDEMIVFRQLTKLEVKE 592 (693)
Q Consensus 515 ~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~--~R~~~~v~f~~l~~~~~~~ 592 (693)
....+++|++||.++- ++|+|+ .|||+.|..+.++-....+
T Consensus 285 -~~~gviviaaTNRpdV------------------------------------lD~ALlRpgRFDRqI~V~~PDi~gRe~ 327 (596)
T COG0465 285 -GNEGVIVIAATNRPDV------------------------------------LDPALLRPGRFDRQILVELPDIKGREQ 327 (596)
T ss_pred -CCCceEEEecCCCccc------------------------------------chHhhcCCCCcceeeecCCcchhhHHH
Confidence 1235678888886653 789998 7999999999999999999
Q ss_pred HHHHHHH
Q 005511 593 IADIMLK 599 (693)
Q Consensus 593 i~~~~l~ 599 (693)
|++-+++
T Consensus 328 IlkvH~~ 334 (596)
T COG0465 328 ILKVHAK 334 (596)
T ss_pred HHHHHhh
Confidence 9975554
No 229
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.60 E-value=4.8e-16 Score=145.40 Aligned_cols=182 Identities=24% Similarity=0.334 Sum_probs=81.1
Q ss_pred hccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccc-------
Q 005511 375 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFME------- 447 (693)
Q Consensus 375 ~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~------- 447 (693)
+.+|+||+.++..+.-+.. |. +++||+||||||||++|++++..+..-.. --.+..+.+.+
T Consensus 2 f~dI~GQe~aKrAL~iAAa----G~-------h~lLl~GppGtGKTmlA~~l~~lLP~l~~-~e~le~~~i~s~~~~~~~ 69 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAA----GG-------HHLLLIGPPGTGKTMLARRLPSLLPPLTE-EEALEVSKIYSVAGLGPD 69 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHH----CC---------EEEES-CCCTHHHHHHHHHHCS--CCE-ECCESS--S-TT---S--
T ss_pred hhhhcCcHHHHHHHHHHHc----CC-------CCeEEECCCCCCHHHHHHHHHHhCCCCch-HHHhhhccccccccCCCC
Confidence 4689999998766654443 32 37999999999999999999988721100 00001111110
Q ss_pred -----------h---hhhhhhcCCCCCCcCcCccchhhHHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCC-C
Q 005511 448 -----------R---HTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSK-G 512 (693)
Q Consensus 448 -----------~---~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~-~ 512 (693)
. .+...++|. .. ..--+.+..+++||||+||+..+++.+++.|++.|++|.++... +
T Consensus 70 ~~~~~~~Pfr~phhs~s~~~liGg-------g~-~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~ 141 (206)
T PF01078_consen 70 EGLIRQRPFRAPHHSASEAALIGG-------GR-PPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAG 141 (206)
T ss_dssp -EEEE---EEEE-TT--HHHHHEE-------GG-GEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETT
T ss_pred CceecCCCcccCCCCcCHHHHhCC-------Cc-CCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECC
Confidence 0 011112221 00 00123445678899999999999999999999999999887654 4
Q ss_pred Ceee-cCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHH
Q 005511 513 RTVD-FKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLE 589 (693)
Q Consensus 513 ~~~~-~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~ 589 (693)
..+. ..++++|+|+|+.+- |+-.... ..+.- .........+.++.+|++|||..+..++++.++
T Consensus 142 ~~~~~Pa~f~lv~a~NPcpC---------G~~~~~~-~~C~C---s~~~~~~Y~~rlsgpllDRiDi~v~~~~~~~~~ 206 (206)
T PF01078_consen 142 GSVTYPARFLLVAAMNPCPC---------GYYGDPD-NRCRC---SPRQIRRYQSRLSGPLLDRIDIHVEVPRVSYEE 206 (206)
T ss_dssp EEEEEB--EEEEEEE-S-------------------------------------------------------------
T ss_pred ceEEEecccEEEEEeccccc---------ccccccc-ccccc---cccccccccccccccccccccccccccccccCC
Confidence 4444 459999999997652 3211100 00000 000112233447899999999999999887664
No 230
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=8.1e-15 Score=162.74 Aligned_cols=205 Identities=17% Similarity=0.276 Sum_probs=132.9
Q ss_pred HHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCC------cceeeecc
Q 005511 369 KMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE------EAMIRLDM 442 (693)
Q Consensus 369 ~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~------~~~~~~~~ 442 (693)
+++...+.+++||+.+++.|...+...+. .+++||+||+|+|||++|+++|+.+++.. .++..++.
T Consensus 9 kyRP~~f~~liGq~~i~~~L~~~l~~~rl--------~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~ 80 (620)
T PRK14948 9 KYRPQRFDELVGQEAIATTLKNALISNRI--------APAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCEL 80 (620)
T ss_pred HhCCCcHhhccChHHHHHHHHHHHHcCCC--------CceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHH
Confidence 34555678899999999999888875431 13699999999999999999999996532 12221111
Q ss_pred ccccchhhhhhhcC-CCCCCcCcCccchhhHHHHc----CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeec
Q 005511 443 SEFMERHTVSKLIG-SPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDF 517 (693)
Q Consensus 443 ~~~~~~~~~~~l~g-~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~ 517 (693)
..........+++. ......+....+.+.+.+.. +.+.|+||||+|+++...+|.||+.||+ +.
T Consensus 81 C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEe-----------Pp 149 (620)
T PRK14948 81 CRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEE-----------PP 149 (620)
T ss_pred HHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhc-----------CC
Confidence 00010000001110 00011222222444444432 3457999999999999999999999998 44
Q ss_pred CCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHH
Q 005511 518 KNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIM 597 (693)
Q Consensus 518 ~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~ 597 (693)
.+++||++|+.... +.+.+.+|| ..+.|.+++.+++...+...
T Consensus 150 ~~tvfIL~t~~~~~------------------------------------llpTIrSRc-~~~~f~~l~~~ei~~~L~~i 192 (620)
T PRK14948 150 PRVVFVLATTDPQR------------------------------------VLPTIISRC-QRFDFRRIPLEAMVQHLSEI 192 (620)
T ss_pred cCeEEEEEeCChhh------------------------------------hhHHHHhhe-eEEEecCCCHHHHHHHHHHH
Confidence 57788888874332 558899999 89999999999888777655
Q ss_pred HHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHH
Q 005511 598 LKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIM 641 (693)
Q Consensus 598 l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~ 641 (693)
+.+. + +.++++++..|++. .. .+.|...+.++
T Consensus 193 a~ke-------g--i~is~~al~~La~~-s~--G~lr~A~~lLe 224 (620)
T PRK14948 193 AEKE-------S--IEIEPEALTLVAQR-SQ--GGLRDAESLLD 224 (620)
T ss_pred HHHh-------C--CCCCHHHHHHHHHH-cC--CCHHHHHHHHH
Confidence 5431 3 33788888888874 22 22444444444
No 231
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=8.1e-15 Score=161.53 Aligned_cols=215 Identities=21% Similarity=0.245 Sum_probs=164.4
Q ss_pred CCCcccccccccCCCCCCCCCccHHHHHhhhhhhhhcCCCCCccCCHHHHHHHHHHHhc---------CCCCCeEEECCC
Q 005511 2 VGESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGR---------RTKNNPCLIGEP 72 (693)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~---------~~~~~vLl~Gp~ 72 (693)
|++++++|+++|.+...++....|-.....|.++ ++||++.++.+...+.+ .+..++||.||+
T Consensus 459 Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~~r--------ViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPT 530 (786)
T COG0542 459 IAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKR--------VIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPT 530 (786)
T ss_pred HHHHHHHHHCCChhhhchhhHHHHHHHHHHHhcc--------eeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCC
Confidence 5778999999999999999999999999999888 99999999999988764 223477899999
Q ss_pred CChHHHHHHHHHHHHhcCCCCCCCCCceEEEEecccccc----------CCcccchHHHHHHHHHHHHHhCCCeEEEEec
Q 005511 73 GVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVA----------GTKYRGEFEERLKKLMEEIKQSDEIILFIDE 142 (693)
Q Consensus 73 GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~----------~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDE 142 (693)
|+|||.+|+++|..+... ...++.++++.+.. +..|+|--+ -..+.+.+++.+.+|+++||
T Consensus 531 GVGKTELAkaLA~~Lfg~-------e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyee--GG~LTEaVRr~PySViLlDE 601 (786)
T COG0542 531 GVGKTELAKALAEALFGD-------EQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEE--GGQLTEAVRRKPYSVILLDE 601 (786)
T ss_pred cccHHHHHHHHHHHhcCC-------CccceeechHHHHHHHHHHHHhCCCCCCceecc--ccchhHhhhcCCCeEEEech
Confidence 999999999999999542 35688999876642 223333222 22344566678889999999
Q ss_pred cchhhhCCCCCChHhHHHHHhhhhcCCC-------------cEEEEEechHHH-----------------Hh----h--h
Q 005511 143 VHTLIGAGAAEGAIDAANILKPSLARGE-------------LQCIGATTLDEY-----------------RK----H--I 186 (693)
Q Consensus 143 id~l~~~~~~~~~~~~~~~L~~~l~~~~-------------v~vI~~t~~~~~-----------------~~----~--~ 186 (693)
|++-. .+++++|+++++.|. .++|.|+|--.. .. . -
T Consensus 602 IEKAH--------pdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~ 673 (786)
T COG0542 602 IEKAH--------PDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKK 673 (786)
T ss_pred hhhcC--------HHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHh
Confidence 99984 459999999998544 577888773210 00 0 1
Q ss_pred hcCHHHhccCC-ccccCCCCHHHHHHHHHHHHHhHh-----hhcCcccChHHHHHHHHhhh
Q 005511 187 EKDPALERRFQ-PVKVPEPSVDETIQILKGLRERYE-----IHHKLRYTDEALVSAAQLSY 241 (693)
Q Consensus 187 ~l~~~l~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~-----~~~~~~~~~~~l~~l~~~~~ 241 (693)
...|.|++|++ .|.|.+++.+...+|+...+.++. ....+.+++++.++++....
T Consensus 674 ~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gy 734 (786)
T COG0542 674 HFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGY 734 (786)
T ss_pred hCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhcc
Confidence 14688889998 899999999999999998775432 13345688999998887654
No 232
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.60 E-value=1.2e-14 Score=148.97 Aligned_cols=232 Identities=15% Similarity=0.169 Sum_probs=138.8
Q ss_pred hccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCC----cceeeecc--------
Q 005511 375 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE----EAMIRLDM-------- 442 (693)
Q Consensus 375 ~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~----~~~~~~~~-------- 442 (693)
|..++||++++..|...+.... .+++||.||+|||||++|++++..+.... .+|. .+.
T Consensus 16 f~~ivGq~~~k~al~~~~~~p~---------~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p~~p~~~~~ 85 (350)
T CHL00081 16 FTAIVGQEEMKLALILNVIDPK---------IGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHPSDPELMSD 85 (350)
T ss_pred HHHHhChHHHHHHHHHhccCCC---------CCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCCCChhhhch
Confidence 5789999999888876665432 24699999999999999999999884211 2332 000
Q ss_pred ---------------------ccccchhhhhhhcCCCC---CCcCcCccchhhHHHHcCCCEEEEEccCcccCHHHHHHH
Q 005511 443 ---------------------SEFMERHTVSKLIGSPP---GYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMM 498 (693)
Q Consensus 443 ---------------------~~~~~~~~~~~l~g~~~---~~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~L 498 (693)
.++....+..+++|... ...+. ....-.+.+.++.+|+||+||++.+++.+|+.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g-~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~L 164 (350)
T CHL00081 86 EVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEG-VKAFEPGLLAKANRGILYVDEVNLLDDHLVDIL 164 (350)
T ss_pred hhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcC-cccccCCeeeecCCCEEEecChHhCCHHHHHHH
Confidence 00000011122233110 00000 000001233456789999999999999999999
Q ss_pred HHHhhcceeeCC-CCCeeec-CCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhcc
Q 005511 499 LQILEDGRLTDS-KGRTVDF-KNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRL 576 (693)
Q Consensus 499 l~~le~~~~~~~-~~~~~~~-~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~ 576 (693)
+..|++|..+.. .|..... .++++|+|.|+... .|+++|++||
T Consensus 165 Leam~e~~~~ier~G~s~~~p~rfiviaT~np~eg-----------------------------------~l~~~LldRf 209 (350)
T CHL00081 165 LDSAASGWNTVEREGISIRHPARFVLVGSGNPEEG-----------------------------------ELRPQLLDRF 209 (350)
T ss_pred HHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccC-----------------------------------CCCHHHHHHh
Confidence 999999765432 2433333 36677777664321 1889999999
Q ss_pred CcEEEcCCCC-HHHHHHHHHHHHHHH-----------------HHHH---hcCCCeEEeCHHHHHHHHHhccCCCCCcch
Q 005511 577 DEMIVFRQLT-KLEVKEIADIMLKEV-----------------FDRL---KTKDIELQVTERFRERVVEEGYNPSYGARP 635 (693)
Q Consensus 577 ~~~v~f~~l~-~~~~~~i~~~~l~~~-----------------~~~~---~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~ 635 (693)
...+.+..++ .++..+|+++..... ..++ +..-..+.+++++++++.+..... +...
T Consensus 210 ~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~--~~~s 287 (350)
T CHL00081 210 GMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSEL--DVDG 287 (350)
T ss_pred CceeecCCCCChHHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHH--CCCC
Confidence 9999999886 577778887643210 0111 111124668999999988753321 2223
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 005511 636 LRRAIMRLLEDSMAEKMLAR 655 (693)
Q Consensus 636 l~~~i~~~i~~~l~~~~l~~ 655 (693)
.|..|. ++..+-+.+++.+
T Consensus 288 ~Ra~i~-l~raArA~Aal~G 306 (350)
T CHL00081 288 LRGDIV-TNRAAKALAAFEG 306 (350)
T ss_pred ChHHHH-HHHHHHHHHHHcC
Confidence 334443 5555555555554
No 233
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.1e-14 Score=154.41 Aligned_cols=183 Identities=20% Similarity=0.367 Sum_probs=136.2
Q ss_pred CccCCHHHHHHHHHHHhc------CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccC----
Q 005511 43 PVVGRQPQIERVVQILGR------RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAG---- 112 (693)
Q Consensus 43 ~iiG~~~~~~~l~~~l~~------~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~---- 112 (693)
+-.|++++++++.+.+.. ..+.-++|+||||+|||++++.+|+.+ +.+++.++.+.+...
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL----------nRkFfRfSvGG~tDvAeIk 481 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL----------NRKFFRFSVGGMTDVAEIK 481 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh----------CCceEEEeccccccHHhhc
Confidence 689999999999997654 223456799999999999999999999 788898887655432
Q ss_pred ---CcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC-----------------CCcE
Q 005511 113 ---TKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR-----------------GELQ 172 (693)
Q Consensus 113 ---~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~-----------------~~v~ 172 (693)
..|.|....++-+.+.....++| +++|||+|.+. + ...|+ -.++|+.+|+. ..+.
T Consensus 482 GHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG-~-g~qGD--PasALLElLDPEQNanFlDHYLdVp~DLSkVL 556 (906)
T KOG2004|consen 482 GHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLG-S-GHQGD--PASALLELLDPEQNANFLDHYLDVPVDLSKVL 556 (906)
T ss_pred ccceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhC-C-CCCCC--hHHHHHHhcChhhccchhhhccccccchhheE
Confidence 34677777777777777776667 78999999996 2 22222 23445555531 3488
Q ss_pred EEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHH-HhHhhh-----cCcccChHHHHHHHHhhhhhhc
Q 005511 173 CIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLR-ERYEIH-----HKLRYTDEALVSAAQLSYQYIS 245 (693)
Q Consensus 173 vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~-~~~~~~-----~~~~~~~~~l~~l~~~~~~~~~ 245 (693)
+|+|+|..+ .++++|+.|+..|+++-+..+|...|.+.++ .+.... ..+.++++++..+.+...+..+
T Consensus 557 FicTAN~id-----tIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaG 630 (906)
T KOG2004|consen 557 FICTANVID-----TIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAG 630 (906)
T ss_pred EEEeccccc-----cCChhhhhhhheeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHh
Confidence 999999887 7999999999999999999999999998765 222222 3356778877777665555433
No 234
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.60 E-value=1.7e-13 Score=147.71 Aligned_cols=208 Identities=22% Similarity=0.241 Sum_probs=140.9
Q ss_pred CCCccCCHHHHHHHHHHHhc----CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEecccccc-----
Q 005511 41 LDPVVGRQPQIERVVQILGR----RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVA----- 111 (693)
Q Consensus 41 ~~~iiG~~~~~~~l~~~l~~----~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~----- 111 (693)
.+.++||+++++++...+.. ..+.+++++||||||||++++.+++.+.... .+..++++++.....
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~-----~~~~~v~in~~~~~~~~~~~ 103 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA-----VKVVYVYINCQIDRTRYAIF 103 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc-----CCcEEEEEECCcCCCHHHHH
Confidence 46799999999998887633 4567899999999999999999999885422 246788888753211
Q ss_pred ----------CCcccc-hHHHHHHHHHHHHHh-CCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhc---CCCcEEEEE
Q 005511 112 ----------GTKYRG-EFEERLKKLMEEIKQ-SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA---RGELQCIGA 176 (693)
Q Consensus 112 ----------~~~~~g-~~~~~l~~~~~~~~~-~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~---~~~v~vI~~ 176 (693)
..+..+ .....+..+...+.. ..+.||+|||+|.+.... ..+....|...++ ...+.+|++
T Consensus 104 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~----~~~~l~~l~~~~~~~~~~~v~vI~i 179 (394)
T PRK00411 104 SEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE----GNDVLYSLLRAHEEYPGARIGVIGI 179 (394)
T ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC----CchHHHHHHHhhhccCCCeEEEEEE
Confidence 011111 223334444444433 356899999999996211 1123333333332 236788999
Q ss_pred echHHHHhhhhcCHHHhccCC--ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhhh
Q 005511 177 TTLDEYRKHIEKDPALERRFQ--PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAI 254 (693)
Q Consensus 177 t~~~~~~~~~~l~~~l~~Rf~--~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 254 (693)
+|...... .+++.+.+||. .+.|++++.++..+|++..+... .....+++++++.+++.+.+..+ ..+.+.
T Consensus 180 ~~~~~~~~--~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~--~~~~~~~~~~l~~i~~~~~~~~G---d~r~a~ 252 (394)
T PRK00411 180 SSDLTFLY--ILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEG--FYPGVVDDEVLDLIADLTAREHG---DARVAI 252 (394)
T ss_pred ECCcchhh--hcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhh--cccCCCCHhHHHHHHHHHHHhcC---cHHHHH
Confidence 98765433 26888888884 78999999999999999876531 23446889999999998866432 347778
Q ss_pred hHHHHHhhHH
Q 005511 255 DLIDEAGSRV 264 (693)
Q Consensus 255 ~ll~~a~~~~ 264 (693)
++|..|...+
T Consensus 253 ~ll~~a~~~a 262 (394)
T PRK00411 253 DLLRRAGLIA 262 (394)
T ss_pred HHHHHHHHHH
Confidence 8887776544
No 235
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.60 E-value=1.7e-14 Score=152.15 Aligned_cols=202 Identities=20% Similarity=0.354 Sum_probs=133.0
Q ss_pred HHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCC--cceeeecccccc
Q 005511 369 KMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE--EAMIRLDMSEFM 446 (693)
Q Consensus 369 ~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~--~~~~~~~~~~~~ 446 (693)
+++...+.+++|++.+++.+...+.... .++++|+||||||||++|+++++.+.+.. .+++.++++++.
T Consensus 8 ky~P~~~~~~~g~~~~~~~L~~~~~~~~---------~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~ 78 (337)
T PRK12402 8 KYRPALLEDILGQDEVVERLSRAVDSPN---------LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFF 78 (337)
T ss_pred hhCCCcHHHhcCCHHHHHHHHHHHhCCC---------CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhh
Confidence 3445556788999999998888775321 12699999999999999999999986543 457788887654
Q ss_pred chhhhhhhcCCCCC---CcCc------CccchhhHHH----H----cCCCEEEEEccCcccCHHHHHHHHHHhhcceeeC
Q 005511 447 ERHTVSKLIGSPPG---YVGY------TEGGQLTEAV----R----RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTD 509 (693)
Q Consensus 447 ~~~~~~~l~g~~~~---~~g~------~~~~~l~~~~----~----~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~ 509 (693)
..... .+ +..+. +.+. .....+.+.+ . .....+|||||++.+++..++.|+..+++.
T Consensus 79 ~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~---- 152 (337)
T PRK12402 79 DQGKK-YL-VEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQY---- 152 (337)
T ss_pred hcchh-hh-hcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhc----
Confidence 22100 00 00000 0000 0011111111 1 134579999999999999999999999862
Q ss_pred CCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHH
Q 005511 510 SKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLE 589 (693)
Q Consensus 510 ~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~ 589 (693)
..++.||++++.... +.+.+.+|+ ..+.|.|++.++
T Consensus 153 -------~~~~~~Il~~~~~~~------------------------------------~~~~L~sr~-~~v~~~~~~~~~ 188 (337)
T PRK12402 153 -------SRTCRFIIATRQPSK------------------------------------LIPPIRSRC-LPLFFRAPTDDE 188 (337)
T ss_pred -------cCCCeEEEEeCChhh------------------------------------CchhhcCCc-eEEEecCCCHHH
Confidence 234567777763322 456788998 789999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHH
Q 005511 590 VKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIM 641 (693)
Q Consensus 590 ~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~ 641 (693)
+..++...+.. .++. ++++++++|+... . .+.|.+.+.++
T Consensus 189 ~~~~l~~~~~~-------~~~~--~~~~al~~l~~~~-~--gdlr~l~~~l~ 228 (337)
T PRK12402 189 LVDVLESIAEA-------EGVD--YDDDGLELIAYYA-G--GDLRKAILTLQ 228 (337)
T ss_pred HHHHHHHHHHH-------cCCC--CCHHHHHHHHHHc-C--CCHHHHHHHHH
Confidence 98888776543 2443 8999999999853 2 23555544444
No 236
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.60 E-value=3.1e-14 Score=148.48 Aligned_cols=182 Identities=20% Similarity=0.241 Sum_probs=130.6
Q ss_pred HHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccch
Q 005511 369 KMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMER 448 (693)
Q Consensus 369 ~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~ 448 (693)
+++..-+++++||+.+++.+...+.... ..+.+||+||||+|||++|+++++.+ +.+++.+++++ ...
T Consensus 14 kyrP~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~lll~G~~G~GKT~la~~l~~~~---~~~~~~i~~~~-~~~ 81 (316)
T PHA02544 14 KYRPSTIDECILPAADKETFKSIVKKGR--------IPNMLLHSPSPGTGKTTVAKALCNEV---GAEVLFVNGSD-CRI 81 (316)
T ss_pred ccCCCcHHHhcCcHHHHHHHHHHHhcCC--------CCeEEEeeCcCCCCHHHHHHHHHHHh---CccceEeccCc-ccH
Confidence 3444556789999999998888876321 12346669999999999999999987 55677777765 111
Q ss_pred hhhhhhcCCCCCCcCcCccchhhHHHHc----CCCEEEEEccCccc-CHHHHHHHHHHhhcceeeCCCCCeeecCCeEEE
Q 005511 449 HTVSKLIGSPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKA-HPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLI 523 (693)
Q Consensus 449 ~~~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~l-~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI 523 (693)
.... ..+...... ..+.||||||+|.+ ....++.|...+++. ..++.||
T Consensus 82 ~~i~---------------~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~-----------~~~~~~I 135 (316)
T PHA02544 82 DFVR---------------NRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAY-----------SKNCSFI 135 (316)
T ss_pred HHHH---------------HHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhc-----------CCCceEE
Confidence 0000 111111111 35689999999999 677888888888862 3467899
Q ss_pred EecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHHHHHHHH
Q 005511 524 MTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFD 603 (693)
Q Consensus 524 ~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l~~~~~ 603 (693)
+++|.... +.+++.+|| ..+.|+.++.++...++...+.....
T Consensus 136 lt~n~~~~------------------------------------l~~~l~sR~-~~i~~~~p~~~~~~~il~~~~~~~~~ 178 (316)
T PHA02544 136 ITANNKNG------------------------------------IIEPLRSRC-RVIDFGVPTKEEQIEMMKQMIVRCKG 178 (316)
T ss_pred EEcCChhh------------------------------------chHHHHhhc-eEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 99884432 678999999 78999999999999998887777655
Q ss_pred HHhcCCCeEEeCHHHHHHHHHhcc
Q 005511 604 RLKTKDIELQVTERFRERVVEEGY 627 (693)
Q Consensus 604 ~~~~~~~~l~~~~~~~~~l~~~~~ 627 (693)
.+...++. ++++++.++++..+
T Consensus 179 ~~~~~~~~--i~~~al~~l~~~~~ 200 (316)
T PHA02544 179 ILEAEGVE--VDMKVLAALVKKNF 200 (316)
T ss_pred HHHhcCCC--CCHHHHHHHHHhcC
Confidence 44444554 79999999998544
No 237
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.59 E-value=2.4e-14 Score=147.33 Aligned_cols=108 Identities=24% Similarity=0.408 Sum_probs=77.5
Q ss_pred CCeEEEEeccchhhhCCCCC----ChHhHHHHHhhhhcC------------CCcEEEEEechHHHHhhhhcCHHHhccCC
Q 005511 134 DEIILFIDEVHTLIGAGAAE----GAIDAANILKPSLAR------------GELQCIGATTLDEYRKHIEKDPALERRFQ 197 (693)
Q Consensus 134 ~~~vL~iDEid~l~~~~~~~----~~~~~~~~L~~~l~~------------~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~ 197 (693)
+.+|+||||+|++...+.+. .+..++..|+++++. .++.+|+++.-....+. ++-|.|..||+
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~-DlIPEl~GR~P 325 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPS-DLIPELQGRFP 325 (441)
T ss_pred cCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChh-hccHHHhCccc
Confidence 45699999999998654221 234488899999874 45777877653211111 47799999999
Q ss_pred -ccccCCCCHHHHHHHHH----HHHHhHh---hhc--CcccChHHHHHHHHhhhh
Q 005511 198 -PVKVPEPSVDETIQILK----GLRERYE---IHH--KLRYTDEALVSAAQLSYQ 242 (693)
Q Consensus 198 -~i~~~~p~~~e~~~il~----~~~~~~~---~~~--~~~~~~~~l~~l~~~~~~ 242 (693)
.+.+.+++.+++.+||. .+.+++. ... .+.++++++..+|+.+..
T Consensus 326 i~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~ 380 (441)
T TIGR00390 326 IRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYN 380 (441)
T ss_pred eEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHH
Confidence 88999999999999994 3444443 222 346899999999998864
No 238
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.59 E-value=1.8e-14 Score=144.34 Aligned_cols=110 Identities=25% Similarity=0.377 Sum_probs=75.3
Q ss_pred CEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhcc--cccccccCcCcccchHHHH
Q 005511 479 YTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGG--RRIGFDLDYDEKDSSYNRI 556 (693)
Q Consensus 479 ~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~--~~~~f~~~~~~~~~~~~~l 556 (693)
+|||||||++.|+.+....|.++||..- -.++|++||.+...+.... ..+|
T Consensus 279 pGVLFIDEvHmLDiEcFsfLnralEs~~------------sPiiIlATNRg~~~irGt~~~sphG--------------- 331 (398)
T PF06068_consen 279 PGVLFIDEVHMLDIECFSFLNRALESEL------------SPIIILATNRGITKIRGTDIISPHG--------------- 331 (398)
T ss_dssp E-EEEEESGGGSBHHHHHHHHHHHTSTT--------------EEEEEES-SEEE-BTTS-EEETT---------------
T ss_pred cceEEecchhhccHHHHHHHHHHhcCCC------------CcEEEEecCceeeeccCccCcCCCC---------------
Confidence 5899999999999999999999999743 2389999998876554222 2222
Q ss_pred HHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchH
Q 005511 557 KSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPL 636 (693)
Q Consensus 557 ~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l 636 (693)
++.+|++|+ -+|...||+.+|+.+|+...++. -.+.++++++++|.+-+. ...|
T Consensus 332 -----------iP~DlLDRl-lII~t~py~~~ei~~Il~iR~~~---------E~v~i~~~al~~L~~ig~-----~~SL 385 (398)
T PF06068_consen 332 -----------IPLDLLDRL-LIIRTKPYSEEEIKQILKIRAKE---------EDVEISEDALDLLTKIGV-----ETSL 385 (398)
T ss_dssp -------------HHHHTTE-EEEEE----HHHHHHHHHHHHHH---------CT--B-HHHHHHHHHHHH-----HS-H
T ss_pred -----------CCcchHhhc-EEEECCCCCHHHHHHHHHhhhhh---------hcCcCCHHHHHHHHHHhh-----hccH
Confidence 789999999 99999999999999999876654 225699999999998533 2235
Q ss_pred HHHHH
Q 005511 637 RRAIM 641 (693)
Q Consensus 637 ~~~i~ 641 (693)
+-+++
T Consensus 386 RYAiq 390 (398)
T PF06068_consen 386 RYAIQ 390 (398)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55665
No 239
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.59 E-value=2.7e-15 Score=142.97 Aligned_cols=261 Identities=17% Similarity=0.216 Sum_probs=178.0
Q ss_pred HHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHh---cCCCcceeeeccccccchh
Q 005511 373 TLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYY---FGSEEAMIRLDMSEFMERH 449 (693)
Q Consensus 373 ~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l---~~~~~~~~~~~~~~~~~~~ 449 (693)
.++..+--...+.+.+.+++.+....... ++||.||+|.||+.+|+.|.+.- ..-..+|+.+||..+..+.
T Consensus 181 ~lksgiatrnp~fnrmieqierva~rsr~------p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~ 254 (531)
T COG4650 181 FLKSGIATRNPHFNRMIEQIERVAIRSRA------PILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDT 254 (531)
T ss_pred HHHhcccccChHHHHHHHHHHHHHhhccC------CeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCch
Confidence 44556666667777778888777654444 49999999999999999998653 1225789999999999999
Q ss_pred hhhhhcCCCCC-CcCcCccchhhHHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCC
Q 005511 450 TVSKLIGSPPG-YVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNV 528 (693)
Q Consensus 450 ~~~~l~g~~~~-~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~ 528 (693)
.++.|+|+..| +.|..+. -.+.++.+.+++||+|||..+..+-|.+||+.+|+.++.+.+......++..+|+.|..
T Consensus 255 amsalfghvkgaftga~~~--r~gllrsadggmlfldeigelgadeqamllkaieekrf~pfgsdr~v~sdfqliagtvr 332 (531)
T COG4650 255 AMSALFGHVKGAFTGARES--REGLLRSADGGMLFLDEIGELGADEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVR 332 (531)
T ss_pred HHHHHHhhhccccccchhh--hhhhhccCCCceEehHhhhhcCccHHHHHHHHHHhhccCCCCCccccccchHHhhhhHH
Confidence 99999999765 5554432 23678889999999999999999999999999999887665544444556666666532
Q ss_pred ChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCC----CHHHHHHHHHHHHHHHHHH
Q 005511 529 GSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQL----TKLEVKEIADIMLKEVFDR 604 (693)
Q Consensus 529 ~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l----~~~~~~~i~~~~l~~~~~~ 604 (693)
.- + .......|..+|+.|+ ..+.|..+ ..+++.-=++..|....
T Consensus 333 dl--------------------------r---q~vaeg~fredl~ari-nlwtf~lpgl~qr~ediepnldyelerha-- 380 (531)
T COG4650 333 DL--------------------------R---QLVAEGKFREDLYARI-NLWTFTLPGLRQRQEDIEPNLDYELERHA-- 380 (531)
T ss_pred HH--------------------------H---HHHhccchHHHHHHhh-heeeeeccccccCccccCCCccHHHHHHH--
Confidence 11 1 1122344889999999 77777766 44555544455454433
Q ss_pred HhcCCCeEEeCHHHHHHHHHhccC----CCCCcchHHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEcCCCcEEEEeCCC
Q 005511 605 LKTKDIELQVTERFRERVVEEGYN----PSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVTVLNGSS 680 (693)
Q Consensus 605 ~~~~~~~l~~~~~~~~~l~~~~~~----~~~g~r~l~~~i~~~i~~~l~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~ 680 (693)
...|-.+.|.-++.........+ |..+.|+|...+.++.. +.+++.|++...++....+.+.|.
T Consensus 381 -~~~g~~vrfntearra~l~fa~spqa~w~gnfrelsasvtrmat-----------lad~grit~~~ve~ei~rlr~~w~ 448 (531)
T COG4650 381 -SLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMAT-----------LADSGRITLDVVEDEINRLRYNWQ 448 (531)
T ss_pred -HhhCceeeeehHHHHHHHHhccCcchhhcccHHHHhHHHHHHHH-----------HhcCCceeHHHHHHHHHHHHHHhh
Confidence 23477888988888765544322 34457777776664432 344566666655554444444444
Q ss_pred CCCCC
Q 005511 681 GAPES 685 (693)
Q Consensus 681 ~~~~~ 685 (693)
+...+
T Consensus 449 ~~~p~ 453 (531)
T COG4650 449 ESRPS 453 (531)
T ss_pred hcCch
Confidence 44443
No 240
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.59 E-value=3.2e-14 Score=151.10 Aligned_cols=203 Identities=20% Similarity=0.317 Sum_probs=131.5
Q ss_pred HHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccch
Q 005511 369 KMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMER 448 (693)
Q Consensus 369 ~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~ 448 (693)
+++...+.+++||+.+++.+...+...+ ..+.+||+||||+|||++|+++++.+.+....- ...|+...+-
T Consensus 7 ~~rp~~~~~iig~~~~~~~l~~~~~~~~--------~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~-~~~c~~c~~c 77 (355)
T TIGR02397 7 KYRPQTFEDVIGQEHIVQTLKNAIKNGR--------IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPD-GEPCNECESC 77 (355)
T ss_pred HhCCCcHhhccCcHHHHHHHHHHHHcCC--------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-CCCCCCCHHH
Confidence 3455567889999999999988886432 224589999999999999999999985432110 0011111000
Q ss_pred h--------hhhhhcCCCCCCcCcCccchhhHHHHc----CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeee
Q 005511 449 H--------TVSKLIGSPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVD 516 (693)
Q Consensus 449 ~--------~~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~ 516 (693)
. .+..+-+ .+..+....+.+.+.+.. +.+.|++|||+|.++...++.|++.+++ +
T Consensus 78 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~-----------~ 144 (355)
T TIGR02397 78 KEINSGSSLDVIEIDA--ASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEE-----------P 144 (355)
T ss_pred HHHhcCCCCCEEEeec--cccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhC-----------C
Confidence 0 0000000 001111111334444433 2357999999999999999999999987 2
Q ss_pred cCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHH
Q 005511 517 FKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADI 596 (693)
Q Consensus 517 ~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~ 596 (693)
..++++|++++.... +.+.+.+|+ ..+.|.+++.+++.+++..
T Consensus 145 ~~~~~lIl~~~~~~~------------------------------------l~~~l~sr~-~~~~~~~~~~~~l~~~l~~ 187 (355)
T TIGR02397 145 PEHVVFILATTEPHK------------------------------------IPATILSRC-QRFDFKRIPLEDIVERLKK 187 (355)
T ss_pred ccceeEEEEeCCHHH------------------------------------HHHHHHhhe-eEEEcCCCCHHHHHHHHHH
Confidence 346778888763332 557889999 7899999999999999887
Q ss_pred HHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHH
Q 005511 597 MLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMR 642 (693)
Q Consensus 597 ~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~ 642 (693)
.++.. |+ .++++++++|++. ..+ +.|.+.+.+++
T Consensus 188 ~~~~~-------g~--~i~~~a~~~l~~~-~~g--~~~~a~~~lek 221 (355)
T TIGR02397 188 ILDKE-------GI--KIEDEALELIARA-ADG--SLRDALSLLDQ 221 (355)
T ss_pred HHHHc-------CC--CCCHHHHHHHHHH-cCC--ChHHHHHHHHH
Confidence 76532 43 4889999998874 222 24555555443
No 241
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.59 E-value=7.2e-14 Score=152.04 Aligned_cols=201 Identities=16% Similarity=0.245 Sum_probs=129.9
Q ss_pred CCCCcc-CCHH--HHHHHHHHHhcC--CCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCc
Q 005511 40 KLDPVV-GRQP--QIERVVQILGRR--TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTK 114 (693)
Q Consensus 40 ~~~~ii-G~~~--~~~~l~~~l~~~--~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (693)
+|++++ |..+ ....+..+...+ ..++++||||||+|||+|++++++.+.... .+..++++++..+...
T Consensus 120 tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~-----~~~~v~yi~~~~~~~~-- 192 (450)
T PRK00149 120 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKN-----PNAKVVYVTSEKFTND-- 192 (450)
T ss_pred cccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhC-----CCCeEEEEEHHHHHHH--
Confidence 788854 5543 334444444432 236789999999999999999999986421 1567888887665421
Q ss_pred ccchHH-HHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCCcEEEEEechHHHHhhhhcCHHHh
Q 005511 115 YRGEFE-ERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYRKHIEKDPALE 193 (693)
Q Consensus 115 ~~g~~~-~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~t~~~~~~~~~~l~~~l~ 193 (693)
...... ............ ..+|+|||++.+... .....++...+....+.+..++|++..++.. .-.+++++.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~--~dlLiiDDi~~l~~~--~~~~~~l~~~~n~l~~~~~~iiits~~~p~~--l~~l~~~l~ 266 (450)
T PRK00149 193 FVNALRNNTMEEFKEKYRS--VDVLLIDDIQFLAGK--ERTQEEFFHTFNALHEAGKQIVLTSDRPPKE--LPGLEERLR 266 (450)
T ss_pred HHHHHHcCcHHHHHHHHhc--CCEEEEehhhhhcCC--HHHHHHHHHHHHHHHHCCCcEEEECCCCHHH--HHHHHHHHH
Confidence 111110 011222233333 339999999988432 1122345666666667666555554444431 112679999
Q ss_pred ccCC---ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhhhhHHHHHhhH
Q 005511 194 RRFQ---PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSR 263 (693)
Q Consensus 194 ~Rf~---~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~a~~~ 263 (693)
+||. .++|++|+.++|..|++..+.. .++.+++++++.++....+.+ +.+..++......
T Consensus 267 SRl~~gl~v~i~~pd~~~r~~il~~~~~~----~~~~l~~e~l~~ia~~~~~~~------R~l~~~l~~l~~~ 329 (450)
T PRK00149 267 SRFEWGLTVDIEPPDLETRIAILKKKAEE----EGIDLPDEVLEFIAKNITSNV------RELEGALNRLIAY 329 (450)
T ss_pred hHhcCCeeEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHcCcCCCH------HHHHHHHHHHHHH
Confidence 9994 7899999999999999988774 578899999999999876653 4555555544433
No 242
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=9.8e-15 Score=150.53 Aligned_cols=205 Identities=18% Similarity=0.227 Sum_probs=146.1
Q ss_pred HHHhccccChHHHHHHHHHHHHHHh------hcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccc
Q 005511 372 ETLHKRVIGQDEAVKAISRAIRRAR------VGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEF 445 (693)
Q Consensus 372 ~~l~~~v~g~~~~~~~l~~~~~~~~------~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~ 445 (693)
+..+..+.|.+.+.+.+.+.+.... .++. .|..++||.||||+|||++++++|.+. +..|+.+..+.+
T Consensus 149 ~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr---~p~rglLLfGPpgtGKtmL~~aiAsE~---~atff~iSassL 222 (428)
T KOG0740|consen 149 NVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR---EPVRGLLLFGPPGTGKTMLAKAIATES---GATFFNISASSL 222 (428)
T ss_pred cccccCCcchhhHHHHhhhhhhhcccchHhhhccc---cccchhheecCCCCchHHHHHHHHhhh---cceEeeccHHHh
Confidence 3445667777777777777665442 2222 333469999999999999999999997 778887777777
Q ss_pred cchhhhhhhcCCCCCCcCcCcc--chhhHHHHcCCCEEEEEccCccc-----------CHHHHHHHHHHhhcceeeCCCC
Q 005511 446 MERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKA-----------HPDVFNMMLQILEDGRLTDSKG 512 (693)
Q Consensus 446 ~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~l-----------~~~~~~~Ll~~le~~~~~~~~~ 512 (693)
.++ |+|+.+. +.++..++...++|+||||+|++ ++.....+|-.+.....
T Consensus 223 tsK------------~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s----- 285 (428)
T KOG0740|consen 223 TSK------------YVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNS----- 285 (428)
T ss_pred hhh------------ccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccC-----
Confidence 655 9998876 88899999999999999999998 22333343333333211
Q ss_pred CeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHH
Q 005511 513 RTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKE 592 (693)
Q Consensus 513 ~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~ 592 (693)
..-.++++|.|||.+.. ++.++++||..++.++.++.+....
T Consensus 286 --~~~drvlvigaTN~P~e------------------------------------~Dea~~Rrf~kr~yiplPd~etr~~ 327 (428)
T KOG0740|consen 286 --APDDRVLVIGATNRPWE------------------------------------LDEAARRRFVKRLYIPLPDYETRSL 327 (428)
T ss_pred --CCCCeEEEEecCCCchH------------------------------------HHHHHHHHhhceeeecCCCHHHHHH
Confidence 12237889999997765 6788899998899999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHHHHHHHH
Q 005511 593 IADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSM 648 (693)
Q Consensus 593 i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~~~l 648 (693)
++...|.+.. -.+.+.-+..|++ ....|+..++...+......++
T Consensus 328 ~~~~ll~~~~---------~~l~~~d~~~l~~--~Tegysgsdi~~l~kea~~~p~ 372 (428)
T KOG0740|consen 328 LWKQLLKEQP---------NGLSDLDISLLAK--VTEGYSGSDITALCKEAAMGPL 372 (428)
T ss_pred HHHHHHHhCC---------CCccHHHHHHHHH--HhcCcccccHHHHHHHhhcCch
Confidence 9998887631 1244555666666 3444566667766665554443
No 243
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.58 E-value=8.4e-14 Score=151.02 Aligned_cols=187 Identities=16% Similarity=0.196 Sum_probs=122.2
Q ss_pred CCCCcc-CCHHH--HHHHHHHHhcC--CCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCc
Q 005511 40 KLDPVV-GRQPQ--IERVVQILGRR--TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTK 114 (693)
Q Consensus 40 ~~~~ii-G~~~~--~~~l~~~l~~~--~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (693)
+||+++ |..+. ...+..++... ..+.++|||++|+|||+|++++++.+.... .+..++++++..+...
T Consensus 286 TFDnFvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~-----~g~~V~Yitaeef~~e-- 358 (617)
T PRK14086 286 TFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLY-----PGTRVRYVSSEEFTNE-- 358 (617)
T ss_pred CHhhhcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhC-----CCCeEEEeeHHHHHHH--
Confidence 788876 55443 22344444322 235689999999999999999999885311 2678889987665421
Q ss_pred ccchHH-HHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCCcEEEEEechHHHHhhhhcCHHHh
Q 005511 115 YRGEFE-ERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYRKHIEKDPALE 193 (693)
Q Consensus 115 ~~g~~~-~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~t~~~~~~~~~~l~~~l~ 193 (693)
+..... ..+........+. -+|+|||++.+... ......+..+++.+.+++..+ |.+++.... ..-.+++.|.
T Consensus 359 l~~al~~~~~~~f~~~y~~~--DLLlIDDIq~l~gk--e~tqeeLF~l~N~l~e~gk~I-IITSd~~P~-eL~~l~~rL~ 432 (617)
T PRK14086 359 FINSIRDGKGDSFRRRYREM--DILLVDDIQFLEDK--ESTQEEFFHTFNTLHNANKQI-VLSSDRPPK-QLVTLEDRLR 432 (617)
T ss_pred HHHHHHhccHHHHHHHhhcC--CEEEEehhccccCC--HHHHHHHHHHHHHHHhcCCCE-EEecCCChH-hhhhccHHHH
Confidence 111110 1111222222333 39999999988432 223345667777777766544 445554321 1114789999
Q ss_pred ccCC---ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhh
Q 005511 194 RRFQ---PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQY 243 (693)
Q Consensus 194 ~Rf~---~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 243 (693)
+||. .+.+..|+.+.|..||+..+.. .++.+++++++.++....+.
T Consensus 433 SRf~~GLvv~I~~PD~EtR~aIL~kka~~----r~l~l~~eVi~yLa~r~~rn 481 (617)
T PRK14086 433 NRFEWGLITDVQPPELETRIAILRKKAVQ----EQLNAPPEVLEFIASRISRN 481 (617)
T ss_pred hhhhcCceEEcCCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHhccCC
Confidence 9995 6899999999999999988764 67899999999998876554
No 244
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.58 E-value=4.3e-14 Score=144.82 Aligned_cols=232 Identities=18% Similarity=0.205 Sum_probs=137.4
Q ss_pred hccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcC------CCcceeeeccc-cc--
Q 005511 375 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFG------SEEAMIRLDMS-EF-- 445 (693)
Q Consensus 375 ~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~------~~~~~~~~~~~-~~-- 445 (693)
+..++||+.+++.+.-++.... .+|+||.|+||||||++|++++..+.. ....+..+.+. +.
T Consensus 7 f~~i~Gq~~~~~~l~~~~~~~~---------~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~ 77 (334)
T PRK13407 7 FSAIVGQEEMKQAMVLTAIDPG---------IGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAH 77 (334)
T ss_pred HHHhCCHHHHHHHHHHHHhccC---------CCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCccccc
Confidence 4678999999887765443211 247999999999999999999999831 00111111110 00
Q ss_pred ----------------cchhhhhhhcCCCCC----CcCcCccchhhHHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcc
Q 005511 446 ----------------MERHTVSKLIGSPPG----YVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDG 505 (693)
Q Consensus 446 ----------------~~~~~~~~l~g~~~~----~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~ 505 (693)
....+...++|...= ..|... .-.+.+..+.+|+||+||++.+++.+|+.|++.|+++
T Consensus 78 ~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~--~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~ 155 (334)
T PRK13407 78 VSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKA--FEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSG 155 (334)
T ss_pred ccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCee--ecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcC
Confidence 000111223332000 001000 0012333466789999999999999999999999998
Q ss_pred eeeC-CCCCeeec-CCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcC
Q 005511 506 RLTD-SKGRTVDF-KNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFR 583 (693)
Q Consensus 506 ~~~~-~~~~~~~~-~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~ 583 (693)
.++. ..|..+.. ..+++|+++|+... .++++|++||...+.+.
T Consensus 156 ~v~v~r~G~~~~~p~rfiviAt~NP~e~-----------------------------------~l~~aLldRF~~~v~v~ 200 (334)
T PRK13407 156 ENVVEREGLSIRHPARFVLVGSGNPEEG-----------------------------------ELRPQLLDRFGLSVEVR 200 (334)
T ss_pred CeEEEECCeEEecCCCEEEEecCCcccC-----------------------------------CCCHHHHhhcceEEEcC
Confidence 7542 22434444 36778888775321 17899999998888888
Q ss_pred CCCH-HHHHHHHHHHHHH------HH-----------HH---HhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHH
Q 005511 584 QLTK-LEVKEIADIMLKE------VF-----------DR---LKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMR 642 (693)
Q Consensus 584 ~l~~-~~~~~i~~~~l~~------~~-----------~~---~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~ 642 (693)
+++. ++..+|+.+.... +. +. .+..--.+.+++++.+|+.+..... +....+..+.
T Consensus 201 ~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~--~~~s~Ra~i~- 277 (334)
T PRK13407 201 SPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIAL--GSDGLRGELT- 277 (334)
T ss_pred CCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHH--CCCCchHHHH-
Confidence 7755 7777777664321 00 11 1111124668999999988753322 1223445555
Q ss_pred HHHHHHHHHHHhc
Q 005511 643 LLEDSMAEKMLAR 655 (693)
Q Consensus 643 ~i~~~l~~~~l~~ 655 (693)
++..+-+.+++.+
T Consensus 278 l~~aA~a~A~l~G 290 (334)
T PRK13407 278 LLRAARALAAFEG 290 (334)
T ss_pred HHHHHHHHHHHcC
Confidence 5555556666654
No 245
>PRK05642 DNA replication initiation factor; Validated
Probab=99.58 E-value=5.8e-14 Score=138.56 Aligned_cols=177 Identities=17% Similarity=0.233 Sum_probs=122.1
Q ss_pred CCCCcc-CCHHHHHH-HHHHHhc---CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCc
Q 005511 40 KLDPVV-GRQPQIER-VVQILGR---RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTK 114 (693)
Q Consensus 40 ~~~~ii-G~~~~~~~-l~~~l~~---~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (693)
+||+++ |....... +..+... ...++++|+||+|+|||+|++++++++.. .+..+++++...+...
T Consensus 17 tfdnF~~~~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~-------~~~~v~y~~~~~~~~~-- 87 (234)
T PRK05642 17 TFANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQ-------RGEPAVYLPLAELLDR-- 87 (234)
T ss_pred cccccCcCChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHh-------CCCcEEEeeHHHHHhh--
Confidence 688876 44433332 2222221 22367899999999999999999988753 2567888887665421
Q ss_pred ccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCCcEEEEEechHHHHhhhh-cCHHHh
Q 005511 115 YRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYRKHIE-KDPALE 193 (693)
Q Consensus 115 ~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~t~~~~~~~~~~-l~~~l~ 193 (693)
...+++.+...+ +|+|||++.+.. ...........+....+++..++++++.++.. +. ..+.+.
T Consensus 88 --------~~~~~~~~~~~d--~LiiDDi~~~~~--~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~---l~~~~~~L~ 152 (234)
T PRK05642 88 --------GPELLDNLEQYE--LVCLDDLDVIAG--KADWEEALFHLFNRLRDSGRRLLLAASKSPRE---LPIKLPDLK 152 (234)
T ss_pred --------hHHHHHhhhhCC--EEEEechhhhcC--ChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHH---cCccCccHH
Confidence 123444444454 899999998732 22233446667777777777666666655542 23 479999
Q ss_pred ccC---CccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhh
Q 005511 194 RRF---QPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYI 244 (693)
Q Consensus 194 ~Rf---~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 244 (693)
+|| ..+.+++|+.+++.++++..+.. .++.+++++++.+++...+.+
T Consensus 153 SRl~~gl~~~l~~~~~e~~~~il~~ka~~----~~~~l~~ev~~~L~~~~~~d~ 202 (234)
T PRK05642 153 SRLTLALVFQMRGLSDEDKLRALQLRASR----RGLHLTDEVGHFILTRGTRSM 202 (234)
T ss_pred HHHhcCeeeecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCCCH
Confidence 999 47899999999999999965543 468899999999999887654
No 246
>PRK04195 replication factor C large subunit; Provisional
Probab=99.58 E-value=2e-14 Score=157.44 Aligned_cols=187 Identities=24% Similarity=0.359 Sum_probs=132.8
Q ss_pred HHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhh
Q 005511 372 ETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTV 451 (693)
Q Consensus 372 ~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~ 451 (693)
..-..+++|++.+++.+...+..+..+. +..++||+||||||||++|+++|+.+ +.+++.++.++......+
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~-----~~~~lLL~GppG~GKTtla~ala~el---~~~~ielnasd~r~~~~i 81 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGK-----PKKALLLYGPPGVGKTSLAHALANDY---GWEVIELNASDQRTADVI 81 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCC-----CCCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEEcccccccHHHH
Confidence 3345679999999999999998775332 23469999999999999999999997 678888888876544433
Q ss_pred hhhcCCCCCCcCcCccchhhHHHHcCCCEEEEEccCcccCH----HHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecC
Q 005511 452 SKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHP----DVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 527 (693)
Q Consensus 452 ~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~----~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn 527 (693)
..+++....+ ..+++ ..+.||+|||+|.++. ..++.|+.++++. +..+|+++|
T Consensus 82 ~~~i~~~~~~------~sl~~----~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~-------------~~~iIli~n 138 (482)
T PRK04195 82 ERVAGEAATS------GSLFG----ARRKLILLDEVDGIHGNEDRGGARAILELIKKA-------------KQPIILTAN 138 (482)
T ss_pred HHHHHHhhcc------CcccC----CCCeEEEEecCcccccccchhHHHHHHHHHHcC-------------CCCEEEecc
Confidence 3333321110 11110 2467999999999976 6789999999863 223677777
Q ss_pred CChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCch-hHhhccCcEEEcCCCCHHHHHHHHHHHHHHHHHHHh
Q 005511 528 VGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRP-EFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLK 606 (693)
Q Consensus 528 ~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~-~l~~R~~~~v~f~~l~~~~~~~i~~~~l~~~~~~~~ 606 (693)
.... +.+ .+.+|+ ..|.|++++.+++..++...+..
T Consensus 139 ~~~~------------------------------------~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~------ 175 (482)
T PRK04195 139 DPYD------------------------------------PSLRELRNAC-LMIEFKRLSTRSIVPVLKRICRK------ 175 (482)
T ss_pred Cccc------------------------------------cchhhHhccc-eEEEecCCCHHHHHHHHHHHHHH------
Confidence 4332 333 677888 89999999999999988776643
Q ss_pred cCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHH
Q 005511 607 TKDIELQVTERFRERVVEEGYNPSYGARPLRRAIM 641 (693)
Q Consensus 607 ~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~ 641 (693)
.++ .+++++++.|++. . .++++.+++
T Consensus 176 -egi--~i~~eaL~~Ia~~-s-----~GDlR~ain 201 (482)
T PRK04195 176 -EGI--ECDDEALKEIAER-S-----GGDLRSAIN 201 (482)
T ss_pred -cCC--CCCHHHHHHHHHH-c-----CCCHHHHHH
Confidence 144 4889999999984 2 235666665
No 247
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.58 E-value=3.6e-14 Score=146.11 Aligned_cols=108 Identities=23% Similarity=0.408 Sum_probs=78.2
Q ss_pred CCeEEEEeccchhhhCCCCC----ChHhHHHHHhhhhcC------------CCcEEEEEechHHHHhhhhcCHHHhccCC
Q 005511 134 DEIILFIDEVHTLIGAGAAE----GAIDAANILKPSLAR------------GELQCIGATTLDEYRKHIEKDPALERRFQ 197 (693)
Q Consensus 134 ~~~vL~iDEid~l~~~~~~~----~~~~~~~~L~~~l~~------------~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~ 197 (693)
+.+|+||||+|++...++.. .+..++..|+++++. .++.+|+++.-....+ -++-|.|..||+
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp-~DlIPEl~GR~P 327 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKP-SDLIPELQGRFP 327 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCCh-hhccHHHhCccc
Confidence 45699999999998654321 233488889998874 4577777765321111 146799999999
Q ss_pred -ccccCCCCHHHHHHHHH----HHHHhHhh-----hcCcccChHHHHHHHHhhhh
Q 005511 198 -PVKVPEPSVDETIQILK----GLRERYEI-----HHKLRYTDEALVSAAQLSYQ 242 (693)
Q Consensus 198 -~i~~~~p~~~e~~~il~----~~~~~~~~-----~~~~~~~~~~l~~l~~~~~~ 242 (693)
.+.+.+++.+++.+||. .+.+++.. ...+.++++++..+|+.+..
T Consensus 328 i~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~ 382 (443)
T PRK05201 328 IRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQ 382 (443)
T ss_pred eEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHH
Confidence 88999999999999994 35554432 23456899999999999864
No 248
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.58 E-value=1.2e-13 Score=148.08 Aligned_cols=198 Identities=13% Similarity=0.160 Sum_probs=125.3
Q ss_pred CCCCCcc-CCHHHHH--HHHHHHhc------CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEecccc
Q 005511 39 GKLDPVV-GRQPQIE--RVVQILGR------RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLL 109 (693)
Q Consensus 39 ~~~~~ii-G~~~~~~--~l~~~l~~------~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l 109 (693)
.+||+++ |..+... .+.++... ...++++||||+|+|||+|++++++.+.. .+.++++++...+
T Consensus 108 ~tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~-------~~~~v~yi~~~~f 180 (445)
T PRK12422 108 MTFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRE-------SGGKILYVRSELF 180 (445)
T ss_pred ccccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH-------cCCCEEEeeHHHH
Confidence 3799876 7665543 34444321 12367999999999999999999998854 2567888876554
Q ss_pred ccCCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCCcEEEEEechHHHHhhhhcC
Q 005511 110 VAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYRKHIEKD 189 (693)
Q Consensus 110 ~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~t~~~~~~~~~~l~ 189 (693)
... ........-...|.... ....+|+|||++.+.+. .....++...+..+.+.+..+++.+...+.. ...++
T Consensus 181 ~~~--~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k--~~~qeelf~l~N~l~~~~k~IIlts~~~p~~--l~~l~ 253 (445)
T PRK12422 181 TEH--LVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGK--GATQEEFFHTFNSLHTEGKLIVISSTCAPQD--LKAME 253 (445)
T ss_pred HHH--HHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCC--hhhHHHHHHHHHHHHHCCCcEEEecCCCHHH--HhhhH
Confidence 311 00000000001122211 12349999999987432 2223445555665555555444444333331 12478
Q ss_pred HHHhccCC---ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhhhhHHHHH
Q 005511 190 PALERRFQ---PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEA 260 (693)
Q Consensus 190 ~~l~~Rf~---~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~a 260 (693)
+++.+||. .+.+++|+.+++..|++..+.. .++.+++++++.++....+.+ +.....+...
T Consensus 254 ~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~----~~~~l~~evl~~la~~~~~di------r~L~g~l~~l 317 (445)
T PRK12422 254 ERLISRFEWGIAIPLHPLTKEGLRSFLERKAEA----LSIRIEETALDFLIEALSSNV------KSLLHALTLL 317 (445)
T ss_pred HHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCCCH------HHHHHHHHHH
Confidence 99999994 7899999999999999988774 568899999999988765543 4455555444
No 249
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=7.3e-13 Score=137.97 Aligned_cols=213 Identities=20% Similarity=0.272 Sum_probs=151.2
Q ss_pred CCCccCCHHHHHHHHHHH----hcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccC----
Q 005511 41 LDPVVGRQPQIERVVQIL----GRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAG---- 112 (693)
Q Consensus 41 ~~~iiG~~~~~~~l~~~l----~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~---- 112 (693)
.+.+.+|+++++++...+ ....|.|++++||||||||++++.+++++.... .+..++++||......
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~-----~~~~~~yINc~~~~t~~~i~ 90 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESS-----ANVEVVYINCLELRTPYQVL 90 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhh-----ccCceEEEeeeeCCCHHHHH
Confidence 345899999999977654 457778899999999999999999999996532 1233788988543311
Q ss_pred ---------Ccccch-HHHHHHHHHHHHHh-CCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhc--CCCcEEEEEech
Q 005511 113 ---------TKYRGE-FEERLKKLMEEIKQ-SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA--RGELQCIGATTL 179 (693)
Q Consensus 113 ---------~~~~g~-~~~~l~~~~~~~~~-~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~--~~~v~vI~~t~~ 179 (693)
.+..|. ..+.+..+.+.... ....|+++||+|.|..... +.+-.|..... ...+.+|+.+|.
T Consensus 91 ~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-----~~LY~L~r~~~~~~~~v~vi~i~n~ 165 (366)
T COG1474 91 SKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG-----EVLYSLLRAPGENKVKVSIIAVSND 165 (366)
T ss_pred HHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc-----hHHHHHHhhccccceeEEEEEEecc
Confidence 122221 22233334444433 4567999999999976532 22222222222 234678899998
Q ss_pred HHHHhhhhcCHHHhccCC--ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhhhhHH
Q 005511 180 DEYRKHIEKDPALERRFQ--PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLI 257 (693)
Q Consensus 180 ~~~~~~~~l~~~l~~Rf~--~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll 257 (693)
..+.. .+++.+.++|. .|.||+++.+|...|+....+.. .....+++++++.++..++...+ ..+.++++|
T Consensus 166 ~~~~~--~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~--~~~~~~~~~vl~lia~~~a~~~G---DAR~aidil 238 (366)
T COG1474 166 DKFLD--YLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEG--FSAGVIDDDVLKLIAALVAAESG---DARKAIDIL 238 (366)
T ss_pred HHHHH--HhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhh--ccCCCcCccHHHHHHHHHHHcCc---cHHHHHHHH
Confidence 87633 47999999995 78999999999999999877643 45667899999999988877655 358999999
Q ss_pred HHHhhHHHHhhcC
Q 005511 258 DEAGSRVRLRHAQ 270 (693)
Q Consensus 258 ~~a~~~~~~~~~~ 270 (693)
+.|+..+..+...
T Consensus 239 r~A~eiAe~~~~~ 251 (366)
T COG1474 239 RRAGEIAEREGSR 251 (366)
T ss_pred HHHHHHHHhhCCC
Confidence 9999888755433
No 250
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.57 E-value=1.1e-13 Score=146.23 Aligned_cols=186 Identities=25% Similarity=0.322 Sum_probs=125.2
Q ss_pred ccCCHHHHHHHHHHHhc----------------CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEecc
Q 005511 44 VVGRQPQIERVVQILGR----------------RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMG 107 (693)
Q Consensus 44 iiG~~~~~~~l~~~l~~----------------~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 107 (693)
++||+.+++.|...+.. .+..++||+||||||||++|+++|+.+ +.+++.++++
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l----------~~pf~~id~~ 142 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL----------DVPFAIADAT 142 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh----------CCCceecchh
Confidence 89999999987665421 134789999999999999999999988 6778888887
Q ss_pred ccccCCcccchH-HHHHHHHHHH----HHhCCCeEEEEeccchhhhCCCC------CChHhHHHHHhhhhcCCC------
Q 005511 108 LLVAGTKYRGEF-EERLKKLMEE----IKQSDEIILFIDEVHTLIGAGAA------EGAIDAANILKPSLARGE------ 170 (693)
Q Consensus 108 ~l~~~~~~~g~~-~~~l~~~~~~----~~~~~~~vL~iDEid~l~~~~~~------~~~~~~~~~L~~~l~~~~------ 170 (693)
.+.. ..|.|.. +..+..++.. +....++||||||+|.+.+.+.. .++..+++.|+++|+...
T Consensus 143 ~l~~-~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~ 221 (412)
T PRK05342 143 TLTE-AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQ 221 (412)
T ss_pred hccc-CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCC
Confidence 6543 3345542 3333433332 23456789999999999765221 122357888888886211
Q ss_pred ---------cEEEEEech--------H-------------------------------HHH--------hhhhcCHHHhc
Q 005511 171 ---------LQCIGATTL--------D-------------------------------EYR--------KHIEKDPALER 194 (693)
Q Consensus 171 ---------v~vI~~t~~--------~-------------------------------~~~--------~~~~l~~~l~~ 194 (693)
.++|.|+|. . ... ..+.+.|.|..
T Consensus 222 gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg 301 (412)
T PRK05342 222 GGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG 301 (412)
T ss_pred CCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhC
Confidence 233444332 0 000 01125789999
Q ss_pred cCC-ccccCCCCHHHHHHHHHH----HHHhHh---hh--cCcccChHHHHHHHHhh
Q 005511 195 RFQ-PVKVPEPSVDETIQILKG----LRERYE---IH--HKLRYTDEALVSAAQLS 240 (693)
Q Consensus 195 Rf~-~i~~~~p~~~e~~~il~~----~~~~~~---~~--~~~~~~~~~l~~l~~~~ 240 (693)
|++ .+.|.+++.+++.+|+.. +.+++. .. ..+.++++++..+++.+
T Consensus 302 Rld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~ 357 (412)
T PRK05342 302 RLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKA 357 (412)
T ss_pred CCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhC
Confidence 998 789999999999999983 443322 12 33568999999999864
No 251
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.57 E-value=8.9e-14 Score=149.57 Aligned_cols=188 Identities=18% Similarity=0.286 Sum_probs=121.4
Q ss_pred CCCCC-ccCCHHHH--HHHHHHHhcC--CCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCC
Q 005511 39 GKLDP-VVGRQPQI--ERVVQILGRR--TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGT 113 (693)
Q Consensus 39 ~~~~~-iiG~~~~~--~~l~~~l~~~--~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (693)
.+||+ ++|.++.. ..+..+...+ ..++++||||+|+|||+|++++++.+.... .+..++++++..+...
T Consensus 107 ~tfd~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~-----~~~~v~yi~~~~~~~~- 180 (405)
T TIGR00362 107 YTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENN-----PNAKVVYVSSEKFTND- 180 (405)
T ss_pred CcccccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhC-----CCCcEEEEEHHHHHHH-
Confidence 37888 45766542 2334443332 235689999999999999999999986421 2567888887654321
Q ss_pred cccchHH-HHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCCcEEEEEechHHHHhhhhcCHHH
Q 005511 114 KYRGEFE-ERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYRKHIEKDPAL 192 (693)
Q Consensus 114 ~~~g~~~-~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~t~~~~~~~~~~l~~~l 192 (693)
...... ..+......+... .+|+|||++.+... ......+...+....+.+..++|.+...+..- -.+++.+
T Consensus 181 -~~~~~~~~~~~~~~~~~~~~--dlLiiDDi~~l~~~--~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l--~~l~~~l 253 (405)
T TIGR00362 181 -FVNALRNNKMEEFKEKYRSV--DLLLIDDIQFLAGK--ERTQEEFFHTFNALHENGKQIVLTSDRPPKEL--PGLEERL 253 (405)
T ss_pred -HHHHHHcCCHHHHHHHHHhC--CEEEEehhhhhcCC--HHHHHHHHHHHHHHHHCCCCEEEecCCCHHHH--hhhhhhh
Confidence 000000 0111222333333 39999999988532 11223455566666666655555444444321 1368899
Q ss_pred hccCC---ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhh
Q 005511 193 ERRFQ---PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQY 243 (693)
Q Consensus 193 ~~Rf~---~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 243 (693)
.+||. .+.|++|+.++|..|++..+.. .++.+++++++.++....+.
T Consensus 254 ~SRl~~g~~v~i~~pd~~~r~~il~~~~~~----~~~~l~~e~l~~ia~~~~~~ 303 (405)
T TIGR00362 254 RSRFEWGLVVDIEPPDLETRLAILQKKAEE----EGLELPDEVLEFIAKNIRSN 303 (405)
T ss_pred hhhccCCeEEEeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCCC
Confidence 99995 6899999999999999988774 57889999999999877654
No 252
>PRK08727 hypothetical protein; Validated
Probab=99.57 E-value=1.1e-13 Score=136.51 Aligned_cols=188 Identities=15% Similarity=0.225 Sum_probs=125.7
Q ss_pred CCCCccCCH-HHHHHHHHHHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCcccch
Q 005511 40 KLDPVVGRQ-PQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGE 118 (693)
Q Consensus 40 ~~~~iiG~~-~~~~~l~~~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 118 (693)
+||++++.+ +.+..+...........++|+||+|||||+|++++++.+... +.++.+++...+.
T Consensus 17 ~f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~-------~~~~~y~~~~~~~-------- 81 (233)
T PRK08727 17 RFDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA-------GRSSAYLPLQAAA-------- 81 (233)
T ss_pred ChhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCcEEEEeHHHhh--------
Confidence 688876554 555555554444445669999999999999999999987542 5566677654422
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCCcEEEEEechHHHHhhhhcCHHHhccC--
Q 005511 119 FEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYRKHIEKDPALERRF-- 196 (693)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~t~~~~~~~~~~l~~~l~~Rf-- 196 (693)
..+...+....... +|+|||++.+... ........+.+....+.+ ..+|++++.+.. ..-.+++.+.|||
T Consensus 82 --~~~~~~~~~l~~~d--lLiIDDi~~l~~~--~~~~~~lf~l~n~~~~~~-~~vI~ts~~~p~-~l~~~~~dL~SRl~~ 153 (233)
T PRK08727 82 --GRLRDALEALEGRS--LVALDGLESIAGQ--REDEVALFDFHNRARAAG-ITLLYTARQMPD-GLALVLPDLRSRLAQ 153 (233)
T ss_pred --hhHHHHHHHHhcCC--EEEEeCcccccCC--hHHHHHHHHHHHHHHHcC-CeEEEECCCChh-hhhhhhHHHHHHHhc
Confidence 22334555555444 9999999987432 222223444444444443 556666664331 1113579999997
Q ss_pred -CccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhhhhHHHHH
Q 005511 197 -QPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEA 260 (693)
Q Consensus 197 -~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~a 260 (693)
..+.|++|+.+++.+|++..+.. .++.+++++++.+++.+.|.. +.+..+++..
T Consensus 154 ~~~~~l~~~~~e~~~~iL~~~a~~----~~l~l~~e~~~~La~~~~rd~------r~~l~~L~~l 208 (233)
T PRK08727 154 CIRIGLPVLDDVARAAVLRERAQR----RGLALDEAAIDWLLTHGEREL------AGLVALLDRL 208 (233)
T ss_pred CceEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhCCCCH------HHHHHHHHHH
Confidence 37899999999999999987654 468999999999999887653 5555555543
No 253
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.57 E-value=3.8e-14 Score=162.68 Aligned_cols=180 Identities=19% Similarity=0.276 Sum_probs=130.7
Q ss_pred hccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCC-------Ccceeeeccccccc
Q 005511 375 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGS-------EEAMIRLDMSEFME 447 (693)
Q Consensus 375 ~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~-------~~~~~~~~~~~~~~ 447 (693)
.+.++|++..++.+...+.+.. ..+++|+||||||||++|+.+|+.+... +..++.++++.+..
T Consensus 181 l~~~igr~~ei~~~~~~L~~~~---------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a 251 (731)
T TIGR02639 181 IDPLIGREDELERTIQVLCRRK---------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLA 251 (731)
T ss_pred CCcccCcHHHHHHHHHHHhcCC---------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhh
Confidence 4579999999998877664432 2369999999999999999999987332 34566666655542
Q ss_pred hhhhhhhcCCCCCCcCcCcc--chhhHHHHcCCCEEEEEccCcccC---------HHHHHHHHHHhhcceeeCCCCCeee
Q 005511 448 RHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKAH---------PDVFNMMLQILEDGRLTDSKGRTVD 516 (693)
Q Consensus 448 ~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~l~---------~~~~~~Ll~~le~~~~~~~~~~~~~ 516 (693)
. ..|.|+.+. ..+++.++...+.||||||+|.+. .++++.|+..|+.|.+
T Consensus 252 ~----------~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i--------- 312 (731)
T TIGR02639 252 G----------TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKL--------- 312 (731)
T ss_pred h----------ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCe---------
Confidence 1 225665543 445555555667999999999884 3568889999988654
Q ss_pred cCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhc--CchhHhhccCcEEEcCCCCHHHHHHHH
Q 005511 517 FKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQY--FRPEFLNRLDEMIVFRQLTKLEVKEIA 594 (693)
Q Consensus 517 ~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~--~~~~l~~R~~~~v~f~~l~~~~~~~i~ 594 (693)
.+|.+||... ...+ .+++|.+|| ..|.+.+|+.++..+|+
T Consensus 313 ----~~IgaTt~~e---------------------------------~~~~~~~d~al~rRf-~~i~v~~p~~~~~~~il 354 (731)
T TIGR02639 313 ----RCIGSTTYEE---------------------------------YKNHFEKDRALSRRF-QKIDVGEPSIEETVKIL 354 (731)
T ss_pred ----EEEEecCHHH---------------------------------HHHHhhhhHHHHHhC-ceEEeCCCCHHHHHHHH
Confidence 4888888311 1111 479999999 68999999999999999
Q ss_pred HHHHHHHHHHHhcCCCeEEeCHHHHHHHHHh
Q 005511 595 DIMLKEVFDRLKTKDIELQVTERFRERVVEE 625 (693)
Q Consensus 595 ~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~ 625 (693)
+.....+.. ...+.++++++++++..
T Consensus 355 ~~~~~~~e~-----~~~v~i~~~al~~~~~l 380 (731)
T TIGR02639 355 KGLKEKYEE-----FHHVKYSDEALEAAVEL 380 (731)
T ss_pred HHHHHHHHh-----ccCcccCHHHHHHHHHh
Confidence 987766432 12356899999888864
No 254
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=2.3e-14 Score=159.88 Aligned_cols=206 Identities=18% Similarity=0.299 Sum_probs=132.6
Q ss_pred HHHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCc-----ceeeec-
Q 005511 368 LKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE-----AMIRLD- 441 (693)
Q Consensus 368 ~~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~-----~~~~~~- 441 (693)
.+++...+++++||+.+++.|...+...+. .+.+||+||+|+|||++|+++|+.+.+... +|-.++
T Consensus 8 ~kyRP~~~~eiiGq~~~~~~L~~~i~~~~i--------~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~ 79 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVVQTLRNAIAEGRV--------AHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEM 79 (585)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHhCCC--------ceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHH
Confidence 345566788999999999999888875432 135799999999999999999999854221 111111
Q ss_pred cccccchhhhhhhcC-CCCCCcCcCccchhhHHHHc----CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeee
Q 005511 442 MSEFMERHTVSKLIG-SPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVD 516 (693)
Q Consensus 442 ~~~~~~~~~~~~l~g-~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~ 516 (693)
|..+... ...+++- ...+..+.+..+.+.+.+.. +.+.|+||||+|.++...+|.|++.||+ .
T Consensus 80 c~~i~~~-~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEe-----------p 147 (585)
T PRK14950 80 CRAIAEG-SAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEE-----------P 147 (585)
T ss_pred HHHHhcC-CCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhc-----------C
Confidence 0001000 0000000 00012222222333333332 3467999999999999999999999998 3
Q ss_pred cCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHH
Q 005511 517 FKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADI 596 (693)
Q Consensus 517 ~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~ 596 (693)
..+++||++++.... +.+.+.+|| ..+.|.+++..++..++..
T Consensus 148 p~~tv~Il~t~~~~k------------------------------------ll~tI~SR~-~~i~f~~l~~~el~~~L~~ 190 (585)
T PRK14950 148 PPHAIFILATTEVHK------------------------------------VPATILSRC-QRFDFHRHSVADMAAHLRK 190 (585)
T ss_pred CCCeEEEEEeCChhh------------------------------------hhHHHHhcc-ceeeCCCCCHHHHHHHHHH
Confidence 346778887753222 457889999 7899999999999888876
Q ss_pred HHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHH
Q 005511 597 MLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMR 642 (693)
Q Consensus 597 ~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~ 642 (693)
.+.. .|+ .++++++.+|+.. ..+ +.|.+.+.+++
T Consensus 191 ~a~~-------egl--~i~~eal~~La~~-s~G--dlr~al~~Lek 224 (585)
T PRK14950 191 IAAA-------EGI--NLEPGALEAIARA-ATG--SMRDAENLLQQ 224 (585)
T ss_pred HHHH-------cCC--CCCHHHHHHHHHH-cCC--CHHHHHHHHHH
Confidence 6543 133 4888999888874 222 25555555543
No 255
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.56 E-value=2.6e-14 Score=160.84 Aligned_cols=162 Identities=24% Similarity=0.389 Sum_probs=119.3
Q ss_pred hccccChHHHHHHHHHHHHHHh-------hcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccc
Q 005511 375 HKRVIGQDEAVKAISRAIRRAR-------VGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFME 447 (693)
Q Consensus 375 ~~~v~g~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~ 447 (693)
+.++.|.+.+++.+.+.+.... .+.. .|. +++|+||||||||++|+++++.+ +.+|+.++++++..
T Consensus 151 ~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~---~~~-gill~G~~G~GKt~~~~~~a~~~---~~~f~~is~~~~~~ 223 (644)
T PRK10733 151 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGK---IPK-GVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGSDFVE 223 (644)
T ss_pred HHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCC---CCC-cEEEECCCCCCHHHHHHHHHHHc---CCCEEEEehHHhHH
Confidence 3455666667666666554321 1111 123 49999999999999999999997 78999998887653
Q ss_pred hhhhhhhcCCCCCCcCcCc--cchhhHHHHcCCCEEEEEccCcccCH--------------HHHHHHHHHhhcceeeCCC
Q 005511 448 RHTVSKLIGSPPGYVGYTE--GGQLTEAVRRRPYTVVLFDEIEKAHP--------------DVFNMMLQILEDGRLTDSK 511 (693)
Q Consensus 448 ~~~~~~l~g~~~~~~g~~~--~~~l~~~~~~~~~~vl~iDEid~l~~--------------~~~~~Ll~~le~~~~~~~~ 511 (693)
. ++|... .+.++..++...++||||||+|.+.. .+++.||..|++..
T Consensus 224 ~------------~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~----- 286 (644)
T PRK10733 224 M------------FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE----- 286 (644)
T ss_pred h------------hhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhccc-----
Confidence 2 334332 25566777777889999999999832 36788888887521
Q ss_pred CCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhh--ccCcEEEcCCCCHHH
Q 005511 512 GRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLN--RLDEMIVFRQLTKLE 589 (693)
Q Consensus 512 ~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~--R~~~~v~f~~l~~~~ 589 (693)
...++++|++||.... ++|++++ |||..+.|+.|+.++
T Consensus 287 ----~~~~vivIaaTN~p~~------------------------------------lD~Al~RpgRfdr~i~v~~Pd~~~ 326 (644)
T PRK10733 287 ----GNEGIIVIAATNRPDV------------------------------------LDPALLRPGRFDRQVVVGLPDVRG 326 (644)
T ss_pred ----CCCCeeEEEecCChhh------------------------------------cCHHHhCCcccceEEEcCCCCHHH
Confidence 2346789999996654 7899984 999999999999999
Q ss_pred HHHHHHHHHHH
Q 005511 590 VKEIADIMLKE 600 (693)
Q Consensus 590 ~~~i~~~~l~~ 600 (693)
..+|++.++..
T Consensus 327 R~~Il~~~~~~ 337 (644)
T PRK10733 327 REQILKVHMRR 337 (644)
T ss_pred HHHHHHHHhhc
Confidence 99999887754
No 256
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.56 E-value=1.7e-13 Score=135.63 Aligned_cols=190 Identities=19% Similarity=0.252 Sum_probs=127.4
Q ss_pred CCCCCcc--CCHHHHHHHHHHHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCccc
Q 005511 39 GKLDPVV--GRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYR 116 (693)
Q Consensus 39 ~~~~~ii--G~~~~~~~l~~~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 116 (693)
.+|++++ +.+..++.+..++......+++|+||+|||||++|+++++.+.. .+.+++++++..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~-------~~~~~~~i~~~~~~~~---- 80 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE-------RGKSAIYLPLAELAQA---- 80 (226)
T ss_pred hhhcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh-------cCCcEEEEeHHHHHHh----
Confidence 4677776 35678888888877677889999999999999999999998854 2456888887766421
Q ss_pred chHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCCcEEEEEechHHHHhhhhcC-HHHhcc
Q 005511 117 GEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYRKHIEKD-PALERR 195 (693)
Q Consensus 117 g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~t~~~~~~~~~~l~-~~l~~R 195 (693)
...++..... ..+|+|||+|.+... ..........+....+.+. .+|.+++.... .+... +.+.+|
T Consensus 81 ------~~~~~~~~~~--~~lLvIDdi~~l~~~--~~~~~~L~~~l~~~~~~~~-~iIits~~~~~--~~~~~~~~L~~r 147 (226)
T TIGR03420 81 ------DPEVLEGLEQ--ADLVCLDDVEAIAGQ--PEWQEALFHLYNRVREAGG-RLLIAGRAAPA--QLPLRLPDLRTR 147 (226)
T ss_pred ------HHHHHhhccc--CCEEEEeChhhhcCC--hHHHHHHHHHHHHHHHcCC-eEEEECCCChH--HCCcccHHHHHH
Confidence 1223333332 349999999998432 1111223333333333333 55555554321 11233 788888
Q ss_pred CC---ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhhhhHHHHHhh
Q 005511 196 FQ---PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGS 262 (693)
Q Consensus 196 f~---~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~a~~ 262 (693)
|. .+.+|+|+.+++..+++....+ .++.++++++..+++...|. ++.+..+++.+..
T Consensus 148 ~~~~~~i~l~~l~~~e~~~~l~~~~~~----~~~~~~~~~l~~L~~~~~gn------~r~L~~~l~~~~~ 207 (226)
T TIGR03420 148 LAWGLVFQLPPLSDEEKIAALQSRAAR----RGLQLPDEVADYLLRHGSRD------MGSLMALLDALDR 207 (226)
T ss_pred HhcCeeEecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhccCC------HHHHHHHHHHHHH
Confidence 73 7899999999999999876653 46789999999998865554 4677777766543
No 257
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.56 E-value=1.8e-13 Score=147.35 Aligned_cols=203 Identities=18% Similarity=0.151 Sum_probs=130.3
Q ss_pred cCCCCCcc-CCHHH--HHHHHHHHhcC--CCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccC
Q 005511 38 EGKLDPVV-GRQPQ--IERVVQILGRR--TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAG 112 (693)
Q Consensus 38 ~~~~~~ii-G~~~~--~~~l~~~l~~~--~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (693)
+.+|++++ |.++. ...+..+...+ ..++++|||++|+|||+|++++++.+.... .+..++++++..+...
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~-----~~~~v~yv~~~~f~~~ 185 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNF-----SDLKVSYMSGDEFARK 185 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhC-----CCCeEEEEEHHHHHHH
Confidence 45899876 55443 33344443322 236789999999999999999999875321 2678888887665421
Q ss_pred CcccchHH---HHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCCcEEEEEechHHHHhhhhcC
Q 005511 113 TKYRGEFE---ERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYRKHIEKD 189 (693)
Q Consensus 113 ~~~~g~~~---~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~t~~~~~~~~~~l~ 189 (693)
. ..... ..+.......... -+|+|||++.+.. .......+...+....+.+. .+|.+++.++.. .-.++
T Consensus 186 ~--~~~l~~~~~~~~~~~~~~~~~--dvLiIDDiq~l~~--k~~~~e~lf~l~N~~~~~~k-~iIltsd~~P~~-l~~l~ 257 (450)
T PRK14087 186 A--VDILQKTHKEIEQFKNEICQN--DVLIIDDVQFLSY--KEKTNEIFFTIFNNFIENDK-QLFFSSDKSPEL-LNGFD 257 (450)
T ss_pred H--HHHHHHhhhHHHHHHHHhccC--CEEEEeccccccC--CHHHHHHHHHHHHHHHHcCC-cEEEECCCCHHH-Hhhcc
Confidence 1 11111 1122222223333 3999999998732 12223345566666666665 455555543311 11368
Q ss_pred HHHhccCC---ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhhhhHHHHHh
Q 005511 190 PALERRFQ---PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAG 261 (693)
Q Consensus 190 ~~l~~Rf~---~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~a~ 261 (693)
+.+.+||. .+.+++|+.+++.+|++..++... ....+++++++.++..+.+. ++.+..+|....
T Consensus 258 ~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~g--l~~~l~~evl~~Ia~~~~gd------~R~L~gaL~~l~ 324 (450)
T PRK14087 258 NRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQN--IKQEVTEEAINFISNYYSDD------VRKIKGSVSRLN 324 (450)
T ss_pred HHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcC--CCCCCCHHHHHHHHHccCCC------HHHHHHHHHHHH
Confidence 99999995 789999999999999998887421 12368999999999988775 366666666554
No 258
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=4e-14 Score=157.35 Aligned_cols=204 Identities=19% Similarity=0.319 Sum_probs=133.5
Q ss_pred HHHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCC-----cceeeec-
Q 005511 368 LKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE-----EAMIRLD- 441 (693)
Q Consensus 368 ~~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~-----~~~~~~~- 441 (693)
.+++...+++|+||+.+++.|...+...+. .+.+||+||+|+|||++|+++|+.+.+.. .+|-.+.
T Consensus 9 ~kyRP~~f~~viGq~~~~~~L~~~i~~~~l--------~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~s 80 (614)
T PRK14971 9 RKYRPSTFESVVGQEALTTTLKNAIATNKL--------AHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECES 80 (614)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHcCCC--------CeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchH
Confidence 345666788999999999999888875432 13489999999999999999999985421 1111110
Q ss_pred cccccchh--hhhhhcCCCCCCcCcCccchhhHHHHc----CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCee
Q 005511 442 MSEFMERH--TVSKLIGSPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTV 515 (693)
Q Consensus 442 ~~~~~~~~--~~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~ 515 (693)
|..+.... .+..+-+ .+..+..+.+.+.+.+.. +.+.|++|||+|.++...++.|++.||+
T Consensus 81 C~~~~~~~~~n~~~ld~--~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEe----------- 147 (614)
T PRK14971 81 CVAFNEQRSYNIHELDA--ASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEE----------- 147 (614)
T ss_pred HHHHhcCCCCceEEecc--cccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhC-----------
Confidence 00010000 0000101 111111112222222232 3367999999999999999999999998
Q ss_pred ecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHH
Q 005511 516 DFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIAD 595 (693)
Q Consensus 516 ~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~ 595 (693)
+..+++||++|+.... +.+.+.+|| .++.|.+++.+++...+.
T Consensus 148 pp~~tifIL~tt~~~k------------------------------------Il~tI~SRc-~iv~f~~ls~~ei~~~L~ 190 (614)
T PRK14971 148 PPSYAIFILATTEKHK------------------------------------ILPTILSRC-QIFDFNRIQVADIVNHLQ 190 (614)
T ss_pred CCCCeEEEEEeCCchh------------------------------------chHHHHhhh-heeecCCCCHHHHHHHHH
Confidence 4457788888863332 668999999 899999999999998887
Q ss_pred HHHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHH
Q 005511 596 IMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIM 641 (693)
Q Consensus 596 ~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~ 641 (693)
..+... | +.++++++++|+... . .+.|.+.+.++
T Consensus 191 ~ia~~e-------g--i~i~~~al~~La~~s-~--gdlr~al~~Le 224 (614)
T PRK14971 191 YVASKE-------G--ITAEPEALNVIAQKA-D--GGMRDALSIFD 224 (614)
T ss_pred HHHHHc-------C--CCCCHHHHHHHHHHc-C--CCHHHHHHHHH
Confidence 666532 4 348889999988742 2 22444444443
No 259
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=6e-14 Score=149.16 Aligned_cols=192 Identities=20% Similarity=0.308 Sum_probs=130.3
Q ss_pred HHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCc-------ceeeec
Q 005511 369 KMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE-------AMIRLD 441 (693)
Q Consensus 369 ~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~-------~~~~~~ 441 (693)
+++...+++++||+.+++.+...+.... ..+++||+||||+|||++|+++++.+.+.+. ++..++
T Consensus 10 k~rP~~~~~iig~~~~~~~l~~~i~~~~--------~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~ 81 (367)
T PRK14970 10 KYRPQTFDDVVGQSHITNTLLNAIENNH--------LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFE 81 (367)
T ss_pred HHCCCcHHhcCCcHHHHHHHHHHHHcCC--------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEE
Confidence 4455567889999999998888886532 1246999999999999999999999854211 111111
Q ss_pred cccccchhhhhhhcCCCCCCcCcCccchhhHHHHc----CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeec
Q 005511 442 MSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDF 517 (693)
Q Consensus 442 ~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~ 517 (693)
+.. .+..+....+.+.+.+.. +.+.||+|||+|.++...++.|++.+++ +.
T Consensus 82 l~~--------------~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~-----------~~ 136 (367)
T PRK14970 82 LDA--------------ASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEE-----------PP 136 (367)
T ss_pred ecc--------------ccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhC-----------CC
Confidence 100 001111111233333222 3357999999999999999999999987 23
Q ss_pred CCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHH
Q 005511 518 KNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIM 597 (693)
Q Consensus 518 ~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~ 597 (693)
.++++|++++.... +.+++.+|+ .++.|.+++.+++..++...
T Consensus 137 ~~~~~Il~~~~~~k------------------------------------l~~~l~sr~-~~v~~~~~~~~~l~~~l~~~ 179 (367)
T PRK14970 137 AHAIFILATTEKHK------------------------------------IIPTILSRC-QIFDFKRITIKDIKEHLAGI 179 (367)
T ss_pred CceEEEEEeCCccc------------------------------------CCHHHHhcc-eeEecCCccHHHHHHHHHHH
Confidence 45677777763322 668899999 78999999999999888776
Q ss_pred HHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHH
Q 005511 598 LKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMR 642 (693)
Q Consensus 598 l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~ 642 (693)
+.+. |+ .++++++++|+.. .. .+.|.+.+.++.
T Consensus 180 ~~~~-------g~--~i~~~al~~l~~~-~~--gdlr~~~~~lek 212 (367)
T PRK14970 180 AVKE-------GI--KFEDDALHIIAQK-AD--GALRDALSIFDR 212 (367)
T ss_pred HHHc-------CC--CCCHHHHHHHHHh-CC--CCHHHHHHHHHH
Confidence 6431 44 4899999999984 22 235555555553
No 260
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.56 E-value=2.5e-13 Score=146.09 Aligned_cols=190 Identities=17% Similarity=0.231 Sum_probs=121.6
Q ss_pred CCCCCcc-CCHHHHH--HHHHHHhcC-CCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCc
Q 005511 39 GKLDPVV-GRQPQIE--RVVQILGRR-TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTK 114 (693)
Q Consensus 39 ~~~~~ii-G~~~~~~--~l~~~l~~~-~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (693)
.+||+++ |..+... .+.++...+ ..++++||||||+|||+|++++++.+.... .+..++++++..+....
T Consensus 102 ~tFdnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~-----~~~~v~yi~~~~f~~~~- 175 (440)
T PRK14088 102 YTFENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNE-----PDLRVMYITSEKFLNDL- 175 (440)
T ss_pred CcccccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhC-----CCCeEEEEEHHHHHHHH-
Confidence 3799876 6554432 344444322 246799999999999999999999885421 25678888876643210
Q ss_pred ccchH-HHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCCcEEEEEechHHHHhhhhcCHHHh
Q 005511 115 YRGEF-EERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYRKHIEKDPALE 193 (693)
Q Consensus 115 ~~g~~-~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~t~~~~~~~~~~l~~~l~ 193 (693)
.... ...+.......+ ..+.+|+|||++.+.+. .....+....+..+.+.+..+++++...+..- -.+.+.+.
T Consensus 176 -~~~~~~~~~~~f~~~~~-~~~dvLlIDDi~~l~~~--~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l--~~l~~rL~ 249 (440)
T PRK14088 176 -VDSMKEGKLNEFREKYR-KKVDVLLIDDVQFLIGK--TGVQTELFHTFNELHDSGKQIVICSDREPQKL--SEFQDRLV 249 (440)
T ss_pred -HHHHhcccHHHHHHHHH-hcCCEEEEechhhhcCc--HHHHHHHHHHHHHHHHcCCeEEEECCCCHHHH--HHHHHHHh
Confidence 0000 001112222222 23459999999987532 11123455666666666654444443343321 13578999
Q ss_pred ccCC---ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhh
Q 005511 194 RRFQ---PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYI 244 (693)
Q Consensus 194 ~Rf~---~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 244 (693)
+||. .+.+++|+.+.|..|++..+.. .++.+++++++.+++...+.+
T Consensus 250 SR~~~gl~v~i~~pd~e~r~~IL~~~~~~----~~~~l~~ev~~~Ia~~~~~~~ 299 (440)
T PRK14088 250 SRFQMGLVAKLEPPDEETRKKIARKMLEI----EHGELPEEVLNFVAENVDDNL 299 (440)
T ss_pred hHHhcCceEeeCCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHhccccCH
Confidence 9995 7899999999999999987763 568899999999998876653
No 261
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.56 E-value=1.2e-14 Score=130.76 Aligned_cols=116 Identities=31% Similarity=0.557 Sum_probs=89.1
Q ss_pred EEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCCcCcCcc--chhhHHHHcCC-CEEEEEc
Q 005511 409 FIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRP-YTVVLFD 485 (693)
Q Consensus 409 iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~-~~vl~iD 485 (693)
+||+||||||||++|+.+|+.+ +.+++.++++++.+. +.+.... ..++..++... ++|||||
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~~~~~~i~~~~~~~~------------~~~~~~~~i~~~~~~~~~~~~~~vl~iD 65 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---GFPFIEIDGSELISS------------YAGDSEQKIRDFFKKAKKSAKPCVLFID 65 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---TSEEEEEETTHHHTS------------STTHHHHHHHHHHHHHHHTSTSEEEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhc---ccccccccccccccc------------cccccccccccccccccccccceeeeec
Confidence 6899999999999999999998 788999999887632 3332222 34455555555 7999999
Q ss_pred cCcccCHHH-----------HHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHH
Q 005511 486 EIEKAHPDV-----------FNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYN 554 (693)
Q Consensus 486 Eid~l~~~~-----------~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~ 554 (693)
|+|.+.+.. ++.|+..+++..-. ..++++|++||....
T Consensus 66 e~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~--------~~~~~vI~ttn~~~~----------------------- 114 (132)
T PF00004_consen 66 EIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSK--------NSRVIVIATTNSPDK----------------------- 114 (132)
T ss_dssp TGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTT--------SSSEEEEEEESSGGG-----------------------
T ss_pred cchhcccccccccccccccccceeeecccccccc--------cccceeEEeeCChhh-----------------------
Confidence 999997664 89999999874211 246899999996443
Q ss_pred HHHHHHHHHHhhcCchhHh-hccCcEEEcC
Q 005511 555 RIKSLVTEELKQYFRPEFL-NRLDEMIVFR 583 (693)
Q Consensus 555 ~l~~~~~~~l~~~~~~~l~-~R~~~~v~f~ 583 (693)
++|+++ +||+..+.|+
T Consensus 115 -------------i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 115 -------------IDPALLRSRFDRRIEFP 131 (132)
T ss_dssp -------------SCHHHHSTTSEEEEEE-
T ss_pred -------------CCHhHHhCCCcEEEEcC
Confidence 889999 9998888875
No 262
>PHA02244 ATPase-like protein
Probab=99.55 E-value=6.2e-13 Score=135.08 Aligned_cols=171 Identities=16% Similarity=0.196 Sum_probs=114.0
Q ss_pred ccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhc
Q 005511 376 KRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLI 455 (693)
Q Consensus 376 ~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 455 (693)
...+|+...+......+.++... . .++||+||||||||++|++||+.+ +.+|+.++. +.. ...+.
T Consensus 96 ~~~ig~sp~~~~~~~ri~r~l~~-~------~PVLL~GppGtGKTtLA~aLA~~l---g~pfv~In~--l~d---~~~L~ 160 (383)
T PHA02244 96 TTKIASNPTFHYETADIAKIVNA-N------IPVFLKGGAGSGKNHIAEQIAEAL---DLDFYFMNA--IMD---EFELK 160 (383)
T ss_pred CcccCCCHHHHHHHHHHHHHHhc-C------CCEEEECCCCCCHHHHHHHHHHHh---CCCEEEEec--ChH---HHhhc
Confidence 44566666665555555443211 1 149999999999999999999997 778888873 221 22344
Q ss_pred CCCCCCcCcCccchhhHHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhh
Q 005511 456 GSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEK 535 (693)
Q Consensus 456 g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~ 535 (693)
|... ..|....+.+..++ ..+++|||||++.++++++..|+.+++++.+...++......++.+|+|+|........
T Consensus 161 G~i~-~~g~~~dgpLl~A~--~~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~ 237 (383)
T PHA02244 161 GFID-ANGKFHETPFYEAF--KKGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADH 237 (383)
T ss_pred cccc-ccccccchHHHHHh--hcCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCccc
Confidence 4211 11111224455554 35679999999999999999999999998777666655566799999999964321100
Q ss_pred cccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHH
Q 005511 536 GGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEV 590 (693)
Q Consensus 536 ~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~ 590 (693)
.|. . .+.+++++++|| ..|.|..++..+.
T Consensus 238 -----~y~----G----------------~k~L~~AllDRF-v~I~~dyp~~~E~ 266 (383)
T PHA02244 238 -----IYV----A----------------RNKIDGATLDRF-APIEFDYDEKIEH 266 (383)
T ss_pred -----ccC----C----------------CcccCHHHHhhc-EEeeCCCCcHHHH
Confidence 000 0 011789999999 7899988875443
No 263
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.54 E-value=7.3e-14 Score=159.24 Aligned_cols=180 Identities=21% Similarity=0.358 Sum_probs=126.0
Q ss_pred CCCC-ccCCHHHHHHHHHHHhc------CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccC
Q 005511 40 KLDP-VVGRQPQIERVVQILGR------RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAG 112 (693)
Q Consensus 40 ~~~~-iiG~~~~~~~l~~~l~~------~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (693)
.++. +.|++++++++.+++.. .....++|+||||||||++++.+|+.+ +.+++.++++.....
T Consensus 319 ~l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l----------~~~~~~i~~~~~~d~ 388 (784)
T PRK10787 319 ILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT----------GRKYVRMALGGVRDE 388 (784)
T ss_pred HhhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEEcCCCCCH
Confidence 3454 89999999999876653 345678999999999999999999988 566777765543211
Q ss_pred -------CcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC-----------------
Q 005511 113 -------TKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR----------------- 168 (693)
Q Consensus 113 -------~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~----------------- 168 (693)
..+.|.....+...+..+....| |++|||+|.+.+... + +..++|..+++.
T Consensus 389 ~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~--g--~~~~aLlevld~~~~~~~~d~~~~~~~dl 463 (784)
T PRK10787 389 AEIRGHRRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMR--G--DPASALLEVLDPEQNVAFSDHYLEVDYDL 463 (784)
T ss_pred HHhccchhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccC--C--CHHHHHHHHhccccEEEEecccccccccC
Confidence 12333333344444444332333 899999999964321 1 235566666653
Q ss_pred CCcEEEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHH-hHhh-----hcCcccChHHHHHHHHhh
Q 005511 169 GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRE-RYEI-----HHKLRYTDEALVSAAQLS 240 (693)
Q Consensus 169 ~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~-~~~~-----~~~~~~~~~~l~~l~~~~ 240 (693)
..+.+|+|+|.. .++++|++||..|.|+.++.++..+|.+.++. +... ...+.++++++..+++.+
T Consensus 464 s~v~~i~TaN~~------~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~y 535 (784)
T PRK10787 464 SDVMFVATSNSM------NIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYY 535 (784)
T ss_pred CceEEEEcCCCC------CCCHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhC
Confidence 557888877753 58999999999999999999999999987763 2111 124678999999998743
No 264
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.54 E-value=1.1e-13 Score=155.77 Aligned_cols=203 Identities=18% Similarity=0.213 Sum_probs=127.9
Q ss_pred hccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhc-----------------------
Q 005511 375 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYF----------------------- 431 (693)
Q Consensus 375 ~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~----------------------- 431 (693)
+..|+||+.++..+........ .+++||.|++|||||++|++|++.+.
T Consensus 3 f~~ivGq~~~~~al~~~av~~~---------~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~ 73 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDPR---------IGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEE 73 (633)
T ss_pred cchhcChHHHHHHHHHHhhCCC---------CCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChh
Confidence 4679999998877654443221 24699999999999999999999972
Q ss_pred ---------CCCcceeeeccccccchhhhhhhcCCCCC----CcCcCccchhhHHHHcCCCEEEEEccCcccCHHHHHHH
Q 005511 432 ---------GSEEAMIRLDMSEFMERHTVSKLIGSPPG----YVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMM 498 (693)
Q Consensus 432 ---------~~~~~~~~~~~~~~~~~~~~~~l~g~~~~----~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~L 498 (693)
....+|+.+.++. +...|+|...- ..|.. ..-.+.+..+.++||||||++++++.+|+.|
T Consensus 74 ~~~~~~~~~~~~~pfv~~p~~~-----t~~~l~G~~d~~~~l~~g~~--~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~L 146 (633)
T TIGR02442 74 CRRKYRPSEQRPVPFVNLPLGA-----TEDRVVGSLDIERALREGEK--AFQPGLLAEAHRGILYIDEVNLLDDHLVDVL 146 (633)
T ss_pred hhhcccccccCCCCeeeCCCCC-----cHHHcCCcccHHHHhhcCCe--eecCcceeecCCCeEEeChhhhCCHHHHHHH
Confidence 0123444443332 12234443100 00110 0012334456789999999999999999999
Q ss_pred HHHhhcceeeCC-CCCe-eecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhcc
Q 005511 499 LQILEDGRLTDS-KGRT-VDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRL 576 (693)
Q Consensus 499 l~~le~~~~~~~-~~~~-~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~ 576 (693)
++.|++|.+... .|.. ....++++|+|+|.... .|+++|++||
T Consensus 147 l~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg-----------------------------------~l~~~L~dR~ 191 (633)
T TIGR02442 147 LDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEG-----------------------------------DLRPQLLDRF 191 (633)
T ss_pred HHHHhcCCEEEEECCceeeecCCeEEEEecCCCCC-----------------------------------CCCHHHHhhc
Confidence 999999864432 2322 23358899999885321 1789999999
Q ss_pred CcEEEcCCCC-HHHHHHHHHHHHHH-----------------HHHHH---hcCCCeEEeCHHHHHHHHHhccC
Q 005511 577 DEMIVFRQLT-KLEVKEIADIMLKE-----------------VFDRL---KTKDIELQVTERFRERVVEEGYN 628 (693)
Q Consensus 577 ~~~v~f~~l~-~~~~~~i~~~~l~~-----------------~~~~~---~~~~~~l~~~~~~~~~l~~~~~~ 628 (693)
+..+.++++. .++..+++.+.+.. ....+ +..--.+.++++++++|......
T Consensus 192 ~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~ 264 (633)
T TIGR02442 192 GLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIE 264 (633)
T ss_pred ceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 8888888764 56666666553320 00111 11112356899999998886433
No 265
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.54 E-value=2.6e-13 Score=140.89 Aligned_cols=200 Identities=18% Similarity=0.167 Sum_probs=137.2
Q ss_pred hhcCCCCCccCCHHHHHHHHHHHhcCCCCC-eEEECCCCChHHHHHHHHHHHHhcCCC----CCCCC-------------
Q 005511 36 AEEGKLDPVVGRQPQIERVVQILGRRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDV----PDTIE------------- 97 (693)
Q Consensus 36 ~~~~~~~~iiG~~~~~~~l~~~l~~~~~~~-vLl~Gp~GtGKT~la~~la~~l~~~~~----~~~~~------------- 97 (693)
.+|..+++++|++++++.+...+.....+| +||+||+|+|||++|+.+|+.+.+... |....
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~ 96 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIA 96 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHH
Confidence 678899999999999999999998877665 789999999999999999999977321 11000
Q ss_pred ---CceEEEEecc-ccccCCcccchHHHHHHHHHHHHH----hCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCC
Q 005511 98 ---GKKVITLDMG-LLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG 169 (693)
Q Consensus 98 ---~~~~~~~~~~-~l~~~~~~~g~~~~~l~~~~~~~~----~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~ 169 (693)
+..++.+... ....+.....-....++.+...+. .+...|++|||+|.|.. ...+.|++.+|..
T Consensus 97 ~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~--------~aanaLLk~LEEp 168 (351)
T PRK09112 97 QGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR--------NAANAILKTLEEP 168 (351)
T ss_pred cCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH--------HHHHHHHHHHhcC
Confidence 0112222110 000000001112233444444432 34567999999999954 3678888888853
Q ss_pred --CcEEEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhccc
Q 005511 170 --ELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDR 247 (693)
Q Consensus 170 --~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 247 (693)
...+|.+|+.+. .+.+.+++||..+.|++|+.++..++++.... . ..++++.+..+++.+.|.
T Consensus 169 p~~~~fiLit~~~~-----~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~----~--~~~~~~~~~~i~~~s~G~---- 233 (351)
T PRK09112 169 PARALFILISHSSG-----RLLPTIRSRCQPISLKPLDDDELKKALSHLGS----S--QGSDGEITEALLQRSKGS---- 233 (351)
T ss_pred CCCceEEEEECChh-----hccHHHHhhccEEEecCCCHHHHHHHHHHhhc----c--cCCCHHHHHHHHHHcCCC----
Confidence 456666666665 57899999999999999999999999986321 1 126788888888888765
Q ss_pred CCchhhhhHHHHH
Q 005511 248 FLPDKAIDLIDEA 260 (693)
Q Consensus 248 ~~~~~~~~ll~~a 260 (693)
|+.++.++...
T Consensus 234 --pr~Al~ll~~~ 244 (351)
T PRK09112 234 --VRKALLLLNYG 244 (351)
T ss_pred --HHHHHHHHhcC
Confidence 57777777654
No 266
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.54 E-value=6.4e-14 Score=143.91 Aligned_cols=232 Identities=17% Similarity=0.198 Sum_probs=135.3
Q ss_pred hccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcC------C------Ccce-eeec
Q 005511 375 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFG------S------EEAM-IRLD 441 (693)
Q Consensus 375 ~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~------~------~~~~-~~~~ 441 (693)
+..++||+.++..+.-.+.... .+++++.|+||+|||+++++++..+.. . ..|+ ...+
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~---------~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPK---------IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEE 73 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCC---------CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChH
Confidence 4678999999877755554322 247999999999999999999988721 0 0111 0001
Q ss_pred cc-------------------cccchhhhhhhcCCCCC----CcCcCccchhhHHHHcCCCEEEEEccCcccCHHHHHHH
Q 005511 442 MS-------------------EFMERHTVSKLIGSPPG----YVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMM 498 (693)
Q Consensus 442 ~~-------------------~~~~~~~~~~l~g~~~~----~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~L 498 (693)
|. ++....+..+++|...- ..|... .-.+.+.++.+++||+||++.+++.+|+.|
T Consensus 74 ~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~--~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~L 151 (337)
T TIGR02030 74 VRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKA--FEPGLLARANRGILYIDEVNLLEDHLVDVL 151 (337)
T ss_pred HhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEE--eecCcceeccCCEEEecChHhCCHHHHHHH
Confidence 11 00000111133332100 001000 001234457789999999999999999999
Q ss_pred HHHhhcceeeC-CCCCeeec-CCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhcc
Q 005511 499 LQILEDGRLTD-SKGRTVDF-KNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRL 576 (693)
Q Consensus 499 l~~le~~~~~~-~~~~~~~~-~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~ 576 (693)
+..|++|.++. ..|..... .++++|+++|... ..|+++|++||
T Consensus 152 l~~l~~g~~~v~r~G~~~~~~~r~iviat~np~e-----------------------------------g~l~~~LldRf 196 (337)
T TIGR02030 152 LDVAASGWNVVEREGISIRHPARFVLVGSGNPEE-----------------------------------GELRPQLLDRF 196 (337)
T ss_pred HHHHHhCCeEEEECCEEEEcCCCEEEEecccccc-----------------------------------CCCCHHHHhhc
Confidence 99999986432 22333333 3667777766332 11889999999
Q ss_pred CcEEEcCCCCH-HHHHHHHHHHHHH----------H-------HHHH---hcCCCeEEeCHHHHHHHHHhccCCCCCcch
Q 005511 577 DEMIVFRQLTK-LEVKEIADIMLKE----------V-------FDRL---KTKDIELQVTERFRERVVEEGYNPSYGARP 635 (693)
Q Consensus 577 ~~~v~f~~l~~-~~~~~i~~~~l~~----------~-------~~~~---~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~ 635 (693)
...+.+.+++. ++..+|+++.... + ...+ +..-..+.+++++.+++++.... .|...
T Consensus 197 ~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~--~~~~s 274 (337)
T TIGR02030 197 GLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAE--LDVDG 274 (337)
T ss_pred ceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHH--HCCCC
Confidence 88888888865 7777777663221 1 0111 11112456899999988875322 11222
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 005511 636 LRRAIMRLLEDSMAEKMLAR 655 (693)
Q Consensus 636 l~~~i~~~i~~~l~~~~l~~ 655 (693)
.|..+. ++..+-+.+++.+
T Consensus 275 ~Ra~i~-l~raArA~Aal~G 293 (337)
T TIGR02030 275 LRGELT-LNRAAKALAAFEG 293 (337)
T ss_pred CcHHHH-HHHHHHHHHHHcC
Confidence 333333 5555556666654
No 267
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.54 E-value=6.4e-14 Score=143.43 Aligned_cols=167 Identities=22% Similarity=0.388 Sum_probs=113.9
Q ss_pred HhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCc--ceee-----ecccccc
Q 005511 374 LHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE--AMIR-----LDMSEFM 446 (693)
Q Consensus 374 l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~--~~~~-----~~~~~~~ 446 (693)
.+++++||+.+++.+..++...+.. +.+||+||+|+||+++|.++|+.+++.+. .+.. .+.+++.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl~--------ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~ 73 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIA--------PAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLL 73 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCCC--------ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEE
Confidence 3578999999999999999765421 46999999999999999999999976531 1111 1111111
Q ss_pred chhhhhhhcCCC---------------CCCcCcCccchhhHHHHc----CCCEEEEEccCcccCHHHHHHHHHHhhccee
Q 005511 447 ERHTVSKLIGSP---------------PGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRL 507 (693)
Q Consensus 447 ~~~~~~~l~g~~---------------~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~ 507 (693)
--......-|.. .+.++..+.+.+.+.+.. +.+.|++||++|+++...+|+||+.||+
T Consensus 74 ~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEE--- 150 (314)
T PRK07399 74 WVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEE--- 150 (314)
T ss_pred EEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhC---
Confidence 000000000100 001111122344444443 3468999999999999999999999998
Q ss_pred eCCCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCH
Q 005511 508 TDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTK 587 (693)
Q Consensus 508 ~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~ 587 (693)
+. +++||+.|+.... +.|.+++|| +++.|.+++.
T Consensus 151 --------Pp-~~~fILi~~~~~~------------------------------------Ll~TI~SRc-q~i~f~~l~~ 184 (314)
T PRK07399 151 --------PG-NGTLILIAPSPES------------------------------------LLPTIVSRC-QIIPFYRLSD 184 (314)
T ss_pred --------CC-CCeEEEEECChHh------------------------------------CcHHHHhhc-eEEecCCCCH
Confidence 33 6678888774433 779999999 9999999999
Q ss_pred HHHHHHHHHH
Q 005511 588 LEVKEIADIM 597 (693)
Q Consensus 588 ~~~~~i~~~~ 597 (693)
+++.+++...
T Consensus 185 ~~~~~~L~~~ 194 (314)
T PRK07399 185 EQLEQVLKRL 194 (314)
T ss_pred HHHHHHHHHh
Confidence 9999988764
No 268
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.54 E-value=1.8e-13 Score=142.82 Aligned_cols=196 Identities=14% Similarity=0.171 Sum_probs=135.4
Q ss_pred hhcCCCCCccCCHHHHHHHHHHHhcCCCCC-eEEECCCCChHHHHHHHHHHHHhcCCCCCC-------------------
Q 005511 36 AEEGKLDPVVGRQPQIERVVQILGRRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDVPDT------------------- 95 (693)
Q Consensus 36 ~~~~~~~~iiG~~~~~~~l~~~l~~~~~~~-vLl~Gp~GtGKT~la~~la~~l~~~~~~~~------------------- 95 (693)
.+|.++++++|++..++.|.+.+.....+| +||+||+|+||+++|.++|+.+.+......
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 689999999999999999999999877776 789999999999999999999976432110
Q ss_pred -----CCCceEEEEeccccccCCc-ccchHHHHHHHHHHHHH----hCCCeEEEEeccchhhhCCCCCChHhHHHHHhhh
Q 005511 96 -----IEGKKVITLDMGLLVAGTK-YRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPS 165 (693)
Q Consensus 96 -----~~~~~~~~~~~~~l~~~~~-~~g~~~~~l~~~~~~~~----~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~ 165 (693)
.....++.+....-..+.+ ......+.++.+...+. ...+.|++|||+|.+.. ...+.|++.
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~--------~aanaLLK~ 164 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA--------NAANALLKV 164 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH--------HHHHHHHHH
Confidence 0111233332210000000 00112344555555543 34578999999999953 478889999
Q ss_pred hcC--CCcEEEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhh
Q 005511 166 LAR--GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQY 243 (693)
Q Consensus 166 l~~--~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 243 (693)
++. ...++|.+|+.+. .+.+.+++|+..+.|++|+.++..+++.... ...+++.+..++.++.|.
T Consensus 165 LEepp~~~~~IL~t~~~~-----~llpti~SRc~~i~l~~l~~~~i~~~L~~~~--------~~~~~~~~~~l~~~s~Gs 231 (365)
T PRK07471 165 LEEPPARSLFLLVSHAPA-----RLLPTIRSRCRKLRLRPLAPEDVIDALAAAG--------PDLPDDPRAALAALAEGS 231 (365)
T ss_pred HhcCCCCeEEEEEECCch-----hchHHhhccceEEECCCCCHHHHHHHHHHhc--------ccCCHHHHHHHHHHcCCC
Confidence 986 3567777777776 5788999999999999999999988887432 223444456677777664
Q ss_pred hcccCCchhhhhHHH
Q 005511 244 ISDRFLPDKAIDLID 258 (693)
Q Consensus 244 ~~~~~~~~~~~~ll~ 258 (693)
|..+..++.
T Consensus 232 ------p~~Al~ll~ 240 (365)
T PRK07471 232 ------VGRALRLAG 240 (365)
T ss_pred ------HHHHHHHhc
Confidence 455555554
No 269
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.54 E-value=2e-13 Score=137.46 Aligned_cols=158 Identities=21% Similarity=0.266 Sum_probs=111.1
Q ss_pred EEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCC--cCcC----ccchhhHHHHcCCCEE
Q 005511 408 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGY--VGYT----EGGQLTEAVRRRPYTV 481 (693)
Q Consensus 408 ~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~--~g~~----~~~~l~~~~~~~~~~v 481 (693)
++||.||||||||++|+.+|+.+ +.++++++++.... ..+++|...-. .|.. ..+.+..+.+ .+++
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l---~~~~~rV~~~~~l~---~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~--~g~i 137 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARL---NWPCVRVNLDSHVS---RIDLVGKDAIVLKDGKQITEFRDGILPWALQ--HNVA 137 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHH---CCCeEEEEecCCCC---hhhcCCCceeeccCCcceeEEecCcchhHHh--CCeE
Confidence 59999999999999999999998 88999999987764 34566653211 1111 1133444433 3578
Q ss_pred EEEccCcccCHHHHHHHHHHhh-cceeeCCC-CCee-ecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHH
Q 005511 482 VLFDEIEKAHPDVFNMMLQILE-DGRLTDSK-GRTV-DFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKS 558 (693)
Q Consensus 482 l~iDEid~l~~~~~~~Ll~~le-~~~~~~~~-~~~~-~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~ 558 (693)
|++||+|.++|++++.|+.+|| ++.++..+ ++.+ ..+++++|+|+|..... .....+ ...+
T Consensus 138 lllDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~G-d~~G~y----------~Gt~----- 201 (327)
T TIGR01650 138 LCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLG-DTTGLY----------HGTQ----- 201 (327)
T ss_pred EEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcC-CCCcce----------eeee-----
Confidence 9999999999999999999999 46776654 5666 34489999999953210 000000 1111
Q ss_pred HHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHH
Q 005511 559 LVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIM 597 (693)
Q Consensus 559 ~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~ 597 (693)
.++.++++||-.++.+..++.++-.+|+...
T Consensus 202 --------~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~ 232 (327)
T TIGR01650 202 --------QINQAQMDRWSIVTTLNYLEHDNEAAIVLAK 232 (327)
T ss_pred --------cCCHHHHhheeeEeeCCCCCHHHHHHHHHhh
Confidence 1789999999555689999988888887543
No 270
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.54 E-value=5.9e-14 Score=136.75 Aligned_cols=188 Identities=17% Similarity=0.294 Sum_probs=114.2
Q ss_pred CCCCCcc-CCH--HHHHHHHHHHhcCCC--CCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCC
Q 005511 39 GKLDPVV-GRQ--PQIERVVQILGRRTK--NNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGT 113 (693)
Q Consensus 39 ~~~~~ii-G~~--~~~~~l~~~l~~~~~--~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (693)
-+||+++ |.. .....+..+...+.. +.++||||+|+|||+|.+++++.+.... .+.+++++++..+...
T Consensus 5 ~tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~-----~~~~v~y~~~~~f~~~- 78 (219)
T PF00308_consen 5 YTFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQH-----PGKRVVYLSAEEFIRE- 78 (219)
T ss_dssp -SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHC-----TTS-EEEEEHHHHHHH-
T ss_pred CccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhcc-----ccccceeecHHHHHHH-
Confidence 3789885 653 333334444443222 4689999999999999999999875421 2678899987665421
Q ss_pred cccchH-HHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCCcEEEEEechHHHHhhhhcCHHH
Q 005511 114 KYRGEF-EERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYRKHIEKDPAL 192 (693)
Q Consensus 114 ~~~g~~-~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~t~~~~~~~~~~l~~~l 192 (693)
+.... ...+..+.......+ +|+|||++.+... ..........+....+++..+|+.+...|. ....+++.+
T Consensus 79 -~~~~~~~~~~~~~~~~~~~~D--lL~iDDi~~l~~~--~~~q~~lf~l~n~~~~~~k~li~ts~~~P~--~l~~~~~~L 151 (219)
T PF00308_consen 79 -FADALRDGEIEEFKDRLRSAD--LLIIDDIQFLAGK--QRTQEELFHLFNRLIESGKQLILTSDRPPS--ELSGLLPDL 151 (219)
T ss_dssp -HHHHHHTTSHHHHHHHHCTSS--EEEEETGGGGTTH--HHHHHHHHHHHHHHHHTTSEEEEEESS-TT--TTTTS-HHH
T ss_pred -HHHHHHcccchhhhhhhhcCC--EEEEecchhhcCc--hHHHHHHHHHHHHHHhhCCeEEEEeCCCCc--cccccChhh
Confidence 00000 011223334444444 9999999998421 112334556666666777655444434443 122468999
Q ss_pred hccCC---ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhh
Q 005511 193 ERRFQ---PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQY 243 (693)
Q Consensus 193 ~~Rf~---~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 243 (693)
.+||. .+.+.+|+.++|.+|++..+.. .++.+++++++.+++...+.
T Consensus 152 ~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~----~~~~l~~~v~~~l~~~~~~~ 201 (219)
T PF00308_consen 152 RSRLSWGLVVELQPPDDEDRRRILQKKAKE----RGIELPEEVIEYLARRFRRD 201 (219)
T ss_dssp HHHHHCSEEEEE----HHHHHHHHHHHHHH----TT--S-HHHHHHHHHHTTSS
T ss_pred hhhHhhcchhhcCCCCHHHHHHHHHHHHHH----hCCCCcHHHHHHHHHhhcCC
Confidence 99994 7899999999999999988774 67889999999999876554
No 271
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.54 E-value=8.8e-14 Score=153.16 Aligned_cols=223 Identities=12% Similarity=0.041 Sum_probs=141.1
Q ss_pred HhhhhhhhhcCCCCCccCCHHHHHHHHHHHhcCCC-----CCeEEECCCCChHHHHHHHHHHHHhcCCCCC-CCCCce--
Q 005511 29 GTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTK-----NNPCLIGEPGVGKTAIAEGLAQRIASGDVPD-TIEGKK-- 100 (693)
Q Consensus 29 ~~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~~~-----~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~-~~~~~~-- 100 (693)
..+|.++|+|.++++++|+++.++.|..++..... .-++|+|||||||||+++.+|+.+....... ...++.
T Consensus 71 ~~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~ 150 (637)
T TIGR00602 71 NEPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQ 150 (637)
T ss_pred cCchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhccc
Confidence 35799999999999999999999999998875332 2388999999999999999999874321100 000000
Q ss_pred --EEEEeccccccCCcccchHHHHHHHHHHHHH----------hCCCeEEEEeccchhhhCCCCCChHhHHHHHh-hhhc
Q 005511 101 --VITLDMGLLVAGTKYRGEFEERLKKLMEEIK----------QSDEIILFIDEVHTLIGAGAAEGAIDAANILK-PSLA 167 (693)
Q Consensus 101 --~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~----------~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~-~~l~ 167 (693)
.+.+- ..+.............+..++..+. .....||||||++.++.. ......++|+ ...+
T Consensus 151 ~~~~~~~-~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r----~~~~lq~lLr~~~~e 225 (637)
T TIGR00602 151 KNDHKVT-LSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR----DTRALHEILRWKYVS 225 (637)
T ss_pred ccccccc-hhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh----hHHHHHHHHHHHhhc
Confidence 00000 0000000000111223444444433 134679999999987632 1233556666 5667
Q ss_pred CCCcEEEEEechHHH------Hhhhh----cCHHHhc--cCCccccCCCCHHHHHHHHHHHHHhHhh--hcCccc-ChHH
Q 005511 168 RGELQCIGATTLDEY------RKHIE----KDPALER--RFQPVKVPEPSVDETIQILKGLRERYEI--HHKLRY-TDEA 232 (693)
Q Consensus 168 ~~~v~vI~~t~~~~~------~~~~~----l~~~l~~--Rf~~i~~~~p~~~e~~~il~~~~~~~~~--~~~~~~-~~~~ 232 (693)
.+.+.+|++++.... ...+. +.+++++ |...|.|++++..+..+.|+.++..... .....+ ++++
T Consensus 226 ~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~ 305 (637)
T TIGR00602 226 IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTS 305 (637)
T ss_pred CCCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHH
Confidence 778888888874321 01122 4578887 5568999999999998888888764211 122223 4678
Q ss_pred HHHHHHhhhhhhcccCCchhhhhHHHHHhh
Q 005511 233 LVSAAQLSYQYISDRFLPDKAIDLIDEAGS 262 (693)
Q Consensus 233 l~~l~~~~~~~~~~~~~~~~~~~ll~~a~~ 262 (693)
+..++..+.|.+ |.|+..|+-++.
T Consensus 306 l~~I~~~s~GDi------RsAIn~LQf~~~ 329 (637)
T TIGR00602 306 VELLCQGCSGDI------RSAINSLQFSSS 329 (637)
T ss_pred HHHHHHhCCChH------HHHHHHHHHHHh
Confidence 888888777765 788888887653
No 272
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.53 E-value=1.7e-13 Score=158.19 Aligned_cols=182 Identities=18% Similarity=0.258 Sum_probs=125.8
Q ss_pred HHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCC-------Ccceeeeccccc
Q 005511 373 TLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGS-------EEAMIRLDMSEF 445 (693)
Q Consensus 373 ~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~-------~~~~~~~~~~~~ 445 (693)
.-.+.++|++..++++...+.+.. ..+++|+||||||||++|+.+|+.+... +..++.++++.+
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r~~---------~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l 254 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLRRR---------QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL 254 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhcCC---------cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhh
Confidence 334679999999888877665432 2369999999999999999999987322 233555555543
Q ss_pred cchhhhhhhcCCCCCCcCcCcc--chhhHHHHc-CCCEEEEEccCcccCH--------HHHHHHHHHhhcceeeCCCCCe
Q 005511 446 MERHTVSKLIGSPPGYVGYTEG--GQLTEAVRR-RPYTVVLFDEIEKAHP--------DVFNMMLQILEDGRLTDSKGRT 514 (693)
Q Consensus 446 ~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~-~~~~vl~iDEid~l~~--------~~~~~Ll~~le~~~~~~~~~~~ 514 (693)
.. ...|.|+.+. +.+++.+.. ..+.||||||++.+.. ++.|.|+..|+.|.+
T Consensus 255 ~a----------g~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l------- 317 (852)
T TIGR03345 255 QA----------GASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGEL------- 317 (852)
T ss_pred hc----------ccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCe-------
Confidence 31 1236665543 444554443 4568999999999853 345678888888754
Q ss_pred eecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhc--CchhHhhccCcEEEcCCCCHHHHHH
Q 005511 515 VDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQY--FRPEFLNRLDEMIVFRQLTKLEVKE 592 (693)
Q Consensus 515 ~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~--~~~~l~~R~~~~v~f~~l~~~~~~~ 592 (693)
.+|.+|+... ...+ .+|+|.+|| +.|.+++|+.++..+
T Consensus 318 ------~~IgaTT~~e---------------------------------~~~~~~~d~AL~rRf-~~i~v~eps~~~~~~ 357 (852)
T TIGR03345 318 ------RTIAATTWAE---------------------------------YKKYFEKDPALTRRF-QVVKVEEPDEETAIR 357 (852)
T ss_pred ------EEEEecCHHH---------------------------------HhhhhhccHHHHHhC-eEEEeCCCCHHHHHH
Confidence 4889987321 1111 579999999 799999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHh
Q 005511 593 IADIMLKEVFDRLKTKDIELQVTERFRERVVEE 625 (693)
Q Consensus 593 i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~ 625 (693)
|++.....+... ..+.++++++..++..
T Consensus 358 iL~~~~~~~e~~-----~~v~i~d~al~~~~~l 385 (852)
T TIGR03345 358 MLRGLAPVLEKH-----HGVLILDEAVVAAVEL 385 (852)
T ss_pred HHHHHHHhhhhc-----CCCeeCHHHHHHHHHH
Confidence 986555443321 2356888888887764
No 273
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.53 E-value=2.2e-13 Score=137.03 Aligned_cols=163 Identities=20% Similarity=0.306 Sum_probs=109.7
Q ss_pred HHHHHHHHHHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCcccchH---------
Q 005511 49 PQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEF--------- 119 (693)
Q Consensus 49 ~~~~~l~~~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------- 119 (693)
+.++++...+. ...++||+||||||||++|+++|+.+ +.+++.+++..-.......|..
T Consensus 9 ~l~~~~l~~l~--~g~~vLL~G~~GtGKT~lA~~la~~l----------g~~~~~i~~~~~~~~~dllg~~~~~~~~~~~ 76 (262)
T TIGR02640 9 RVTSRALRYLK--SGYPVHLRGPAGTGKTTLAMHVARKR----------DRPVMLINGDAELTTSDLVGSYAGYTRKKVH 76 (262)
T ss_pred HHHHHHHHHHh--cCCeEEEEcCCCCCHHHHHHHHHHHh----------CCCEEEEeCCccCCHHHHhhhhcccchhhHH
Confidence 34445555555 35789999999999999999999977 6778888765322111111110
Q ss_pred HHHH----------------HHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCC--------------
Q 005511 120 EERL----------------KKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG-------------- 169 (693)
Q Consensus 120 ~~~l----------------~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------- 169 (693)
...+ ..++..+. .+.+|+|||++.+. .++++.|..+++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~g~l~~A~~--~g~~lllDEi~r~~--------~~~q~~Ll~~Le~~~~~i~~~~~~~~~i 146 (262)
T TIGR02640 77 DQFIHNVVKLEDIVRQNWVDNRLTLAVR--EGFTLVYDEFTRSK--------PETNNVLLSVFEEGVLELPGKRGTSRYV 146 (262)
T ss_pred HHHHHHhhhhhcccceeecCchHHHHHH--cCCEEEEcchhhCC--------HHHHHHHHHHhcCCeEEccCCCCCCceE
Confidence 0000 11222222 24599999999984 34788888877532
Q ss_pred ----CcEEEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhh
Q 005511 170 ----ELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQ 242 (693)
Q Consensus 170 ----~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 242 (693)
.+.+|+|+|+..+.....+++++.+||..+.++.|+.++..+|++... .++++..+.++++...
T Consensus 147 ~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~~---------~~~~~~~~~iv~~~~~ 214 (262)
T TIGR02640 147 DVHPEFRVIFTSNPVEYAGVHETQDALLDRLITIFMDYPDIDTETAILRAKT---------DVAEDSAATIVRLVRE 214 (262)
T ss_pred ecCCCCEEEEeeCCccccceecccHHHHhhcEEEECCCCCHHHHHHHHHHhh---------CCCHHHHHHHHHHHHH
Confidence 467999999876655556789999999999999999999999988542 2456666666655433
No 274
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.53 E-value=8e-14 Score=145.46 Aligned_cols=171 Identities=30% Similarity=0.408 Sum_probs=119.2
Q ss_pred HHHHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeecccccc
Q 005511 367 LLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFM 446 (693)
Q Consensus 367 ~~~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~ 446 (693)
.......+...++|+++++..+..++.... ++||.||||||||++|+.+|+.+ +.+|+.+.|....
T Consensus 15 ~~~~~~~~~~~~~g~~~~~~~~l~a~~~~~-----------~vll~G~PG~gKT~la~~lA~~l---~~~~~~i~~t~~l 80 (329)
T COG0714 15 LGKIRSELEKVVVGDEEVIELALLALLAGG-----------HVLLEGPPGVGKTLLARALARAL---GLPFVRIQCTPDL 80 (329)
T ss_pred HHHHHhhcCCeeeccHHHHHHHHHHHHcCC-----------CEEEECCCCccHHHHHHHHHHHh---CCCeEEEecCCCC
Confidence 334556667779998888887776666542 69999999999999999999998 7899999998766
Q ss_pred chhhhhhhcCCCCCC-----cCcC--ccchhhHHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecC-
Q 005511 447 ERHTVSKLIGSPPGY-----VGYT--EGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFK- 518 (693)
Q Consensus 447 ~~~~~~~l~g~~~~~-----~g~~--~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~- 518 (693)
.. ++++|...-. .+.. ..+.++...+ +++|+|||++.++.+++.|+..|+++.++..+...+..+
T Consensus 81 ~p---~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~ 153 (329)
T COG0714 81 LP---SDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPP 153 (329)
T ss_pred CH---HHhcCchhHhhhhccCCeEEEecCCcccccc----eEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCC
Confidence 43 3455542211 0100 0133333322 699999999999999999999999999887653314444
Q ss_pred CeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHH
Q 005511 519 NTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLE 589 (693)
Q Consensus 519 ~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~ 589 (693)
.+++|+|+|.... +..+. +++++++||...+.++.+..++
T Consensus 154 ~f~viaT~Np~e~------------------~g~~~-------------l~eA~ldRf~~~~~v~yp~~~~ 193 (329)
T COG0714 154 PFIVIATQNPGEY------------------EGTYP-------------LPEALLDRFLLRIYVDYPDSEE 193 (329)
T ss_pred CCEEEEccCcccc------------------CCCcC-------------CCHHHHhhEEEEEecCCCCchH
Confidence 5556666674321 11111 7899999997778888774443
No 275
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.52 E-value=3.3e-13 Score=138.37 Aligned_cols=168 Identities=21% Similarity=0.293 Sum_probs=113.0
Q ss_pred HhhhhhhhhcC-CCCCccCCHHHHHHHHHHHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEE-----
Q 005511 29 GTNLTKLAEEG-KLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVI----- 102 (693)
Q Consensus 29 ~~~l~~~~~~~-~~~~iiG~~~~~~~l~~~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~----- 102 (693)
.++++++.++. .|..++||++.+..|...+..+...++||.||+|||||++++.+++.+....+.. +.++.
T Consensus 3 ~~~~~~~~~~~~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~---~~pf~~~p~~ 79 (350)
T CHL00081 3 TNNLKKKERPVFPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVK---DDPFNSHPSD 79 (350)
T ss_pred ccchhhccCCCCCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccC---CCCCCCCCCC
Confidence 35677776665 6899999999999999988888889999999999999999999999886522110 11110
Q ss_pred -----------------------EEeccccccCCcccchHHHHH------HHHHH---------HHHhCCCeEEEEeccc
Q 005511 103 -----------------------TLDMGLLVAGTKYRGEFEERL------KKLME---------EIKQSDEIILFIDEVH 144 (693)
Q Consensus 103 -----------------------~~~~~~l~~~~~~~g~~~~~l------~~~~~---------~~~~~~~~vL~iDEid 144 (693)
.+.+..+- .+.++.++ ...+. .+.+....+||+||++
T Consensus 80 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp-----~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEIn 154 (350)
T CHL00081 80 PELMSDEVREAIQNGETIETEKIKIPMVDLP-----LGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVN 154 (350)
T ss_pred hhhhchhhhhhhcccccccceeccccceecC-----CCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChH
Confidence 00000000 11111111 11111 1123345699999999
Q ss_pred hhhhCCCCCChHhHHHHHhhhhcCC---------------CcEEEEEechHHHHhhhhcCHHHhccCC-ccccCCCC-HH
Q 005511 145 TLIGAGAAEGAIDAANILKPSLARG---------------ELQCIGATTLDEYRKHIEKDPALERRFQ-PVKVPEPS-VD 207 (693)
Q Consensus 145 ~l~~~~~~~~~~~~~~~L~~~l~~~---------------~v~vI~~t~~~~~~~~~~l~~~l~~Rf~-~i~~~~p~-~~ 207 (693)
.+.+. .++.|...++.+ .+++|+++|+.+. .+.+++..||. .+.+..|+ .+
T Consensus 155 rL~~~--------~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg----~l~~~LldRf~l~i~l~~~~~~~ 222 (350)
T CHL00081 155 LLDDH--------LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEG----ELRPQLLDRFGMHAEIRTVKDPE 222 (350)
T ss_pred hCCHH--------HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccC----CCCHHHHHHhCceeecCCCCChH
Confidence 99543 677777776542 2566777776542 48999999998 88999998 58
Q ss_pred HHHHHHHHH
Q 005511 208 ETIQILKGL 216 (693)
Q Consensus 208 e~~~il~~~ 216 (693)
++.+|++..
T Consensus 223 ~e~~il~~~ 231 (350)
T CHL00081 223 LRVKIVEQR 231 (350)
T ss_pred HHHHHHHhh
Confidence 898998864
No 276
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.3e-13 Score=154.86 Aligned_cols=207 Identities=18% Similarity=0.260 Sum_probs=148.0
Q ss_pred HhccccChHHHHHHHHHHHHHHhhc----CCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCC--cceeeeccccccc
Q 005511 374 LHKRVIGQDEAVKAISRAIRRARVG----LKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE--EAMIRLDMSEFME 447 (693)
Q Consensus 374 l~~~v~g~~~~~~~l~~~~~~~~~~----~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~--~~~~~~~~~~~~~ 447 (693)
-|..+-|.+.++..+++.+...... .+..-.|..++||+||||||||.+|+++|...-..+ ..|+.-+.++..+
T Consensus 263 ~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~ls 342 (1080)
T KOG0732|consen 263 GFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLS 342 (1080)
T ss_pred CccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhc
Confidence 3667888888888888877544211 111112223599999999999999999999873222 2333333444433
Q ss_pred hhhhhhhcCCCCCCcCcCcc--chhhHHHHcCCCEEEEEccCcccC-----------HHHHHHHHHHhhcceeeCCCCCe
Q 005511 448 RHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKAH-----------PDVFNMMLQILEDGRLTDSKGRT 514 (693)
Q Consensus 448 ~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~l~-----------~~~~~~Ll~~le~~~~~~~~~~~ 514 (693)
+ |+|+.+. +.+|+.+++..++|+||||||-+. ..+...||.+|++-.
T Consensus 343 k------------wvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGld-------- 402 (1080)
T KOG0732|consen 343 K------------WVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLD-------- 402 (1080)
T ss_pred c------------ccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCC--------
Confidence 3 9999886 678999999999999999999663 358889999998621
Q ss_pred eecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHh--hccCcEEEcCCCCHHHHHH
Q 005511 515 VDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFL--NRLDEMIVFRQLTKLEVKE 592 (693)
Q Consensus 515 ~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~--~R~~~~v~f~~l~~~~~~~ 592 (693)
..+.+++|.+||.... ++|+|+ .|||..++|+.++.++..+
T Consensus 403 -sRgqVvvigATnRpda------------------------------------~dpaLRRPgrfdref~f~lp~~~ar~~ 445 (1080)
T KOG0732|consen 403 -SRGQVVVIGATNRPDA------------------------------------IDPALRRPGRFDREFYFPLPDVDARAK 445 (1080)
T ss_pred -CCCceEEEcccCCccc------------------------------------cchhhcCCcccceeEeeeCCchHHHHH
Confidence 2346789999997765 789995 8999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHHHHHHHH
Q 005511 593 IADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSM 648 (693)
Q Consensus 593 i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~~~l 648 (693)
|+...-. .-.-.+......+|++ -...||..+|+.....+...++
T Consensus 446 Il~Ihtr---------kw~~~i~~~l~~~la~--~t~gy~gaDlkaLCTeAal~~~ 490 (1080)
T KOG0732|consen 446 ILDIHTR---------KWEPPISRELLLWLAE--ETSGYGGADLKALCTEAALIAL 490 (1080)
T ss_pred HHHHhcc---------CCCCCCCHHHHHHHHH--hccccchHHHHHHHHHHhhhhh
Confidence 9854221 2223467788888887 3555666667777665555444
No 277
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.52 E-value=4.1e-14 Score=128.48 Aligned_cols=115 Identities=33% Similarity=0.505 Sum_probs=79.3
Q ss_pred EEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCCcCcCc--cchhhHHHHcCCCEEEEEc
Q 005511 408 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTE--GGQLTEAVRRRPYTVVLFD 485 (693)
Q Consensus 408 ~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~--~~~l~~~~~~~~~~vl~iD 485 (693)
+++|+||||||||++|+.+|+.+ +.++..+.++..... .+++|...-..+..+ .+.+..+++ .++++|||
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~---~~~~~~i~~~~~~~~---~dl~g~~~~~~~~~~~~~~~l~~a~~--~~~il~lD 72 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL---GRPVIRINCSSDTTE---EDLIGSYDPSNGQFEFKDGPLVRAMR--KGGILVLD 72 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH---TCEEEEEE-TTTSTH---HHHHCEEET-TTTTCEEE-CCCTTHH--EEEEEEES
T ss_pred CEEEECCCCCCHHHHHHHHHHHh---hcceEEEEecccccc---ccceeeeeeccccccccccccccccc--ceeEEEEC
Confidence 48999999999999999999998 888999988876543 345554211111111 133443444 46799999
Q ss_pred cCcccCHHHHHHHHHHhhcceeeCCCC-CeeecC-------CeEEEEecCCCh
Q 005511 486 EIEKAHPDVFNMMLQILEDGRLTDSKG-RTVDFK-------NTLLIMTSNVGS 530 (693)
Q Consensus 486 Eid~l~~~~~~~Ll~~le~~~~~~~~~-~~~~~~-------~~~iI~~tn~~~ 530 (693)
|++++++++++.|+.+++++.+....+ ...... ++++|+|+|...
T Consensus 73 Ein~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~ 125 (139)
T PF07728_consen 73 EINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD 125 (139)
T ss_dssp SCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST
T ss_pred CcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC
Confidence 999999999999999999998775443 333333 389999999665
No 278
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.1e-13 Score=142.52 Aligned_cols=183 Identities=21% Similarity=0.258 Sum_probs=113.7
Q ss_pred hccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCC-Cccee---------------
Q 005511 375 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGS-EEAMI--------------- 438 (693)
Q Consensus 375 ~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~-~~~~~--------------- 438 (693)
+.+|+||+.+++.+- -+..|. +++||+||||||||++|+.+...+.-- ...++
T Consensus 178 ~~DV~GQ~~AKrAle----iAAAGg-------HnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~~ 246 (490)
T COG0606 178 FKDVKGQEQAKRALE----IAAAGG-------HNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEG 246 (490)
T ss_pred hhhhcCcHHHHHHHH----HHHhcC-------CcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhccccccc
Confidence 568999999966554 343443 369999999999999999988765100 00000
Q ss_pred --eeccccccch---hhhhhhcCCCCCCcCcCccchhhHHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCC-C
Q 005511 439 --RLDMSEFMER---HTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSK-G 512 (693)
Q Consensus 439 --~~~~~~~~~~---~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~-~ 512 (693)
.....-|... .+...|+|. + + ....+.+..+++|||||||+-.....+++.|.+-||+|++.... +
T Consensus 247 ~~~~~~rPFr~PHHsaS~~aLvGG---G-~----~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~ 318 (490)
T COG0606 247 CPLKIHRPFRAPHHSASLAALVGG---G-G----VPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAG 318 (490)
T ss_pred CccceeCCccCCCccchHHHHhCC---C-C----CCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccCcEEEEEcC
Confidence 0111111111 122233332 1 1 11123344578899999999999999999999999999987755 3
Q ss_pred -CeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHH
Q 005511 513 -RTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLE 589 (693)
Q Consensus 513 -~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~ 589 (693)
....+.++.+|+++|++.. |+.........-... ..+...+.++..|++|||..+..+.++..+
T Consensus 319 ~~v~ypa~Fqlv~AmNpcpc---------G~~~~~~~~C~c~~~----~~~~Y~~klSgp~lDRiDl~vev~~~~~~e 383 (490)
T COG0606 319 SKVTYPARFQLVAAMNPCPC---------GNLGAPLRRCPCSPR----QIKRYLNKLSGPFLDRIDLMVEVPRLSAGE 383 (490)
T ss_pred CeeEEeeeeEEhhhcCCCCc---------cCCCCCCCCcCCCHH----HHHHHHHHhhHHHHhhhhheecccCCCHHH
Confidence 3444559999999998764 322111111000010 112233447889999999999998887444
No 279
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.52 E-value=8.5e-14 Score=128.64 Aligned_cols=177 Identities=17% Similarity=0.289 Sum_probs=121.1
Q ss_pred HHHHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCC--Ccceeeecccc
Q 005511 367 LLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGS--EEAMIRLDMSE 444 (693)
Q Consensus 367 ~~~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~--~~~~~~~~~~~ 444 (693)
..+++.....+++|.++.++++.-..+... .++++|.|||||||||.+.++|+.+.|. ...+..+|.++
T Consensus 18 VeKYrP~~l~dIVGNe~tv~rl~via~~gn---------mP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASd 88 (333)
T KOG0991|consen 18 VEKYRPSVLQDIVGNEDTVERLSVIAKEGN---------MPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASD 88 (333)
T ss_pred HHhhCchHHHHhhCCHHHHHHHHHHHHcCC---------CCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcc
Confidence 345566667889999999999877766442 2379999999999999999999999663 34455555544
Q ss_pred ccchhhhhhhcCCCCCCcCcCccchhhHHHHc------CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecC
Q 005511 445 FMERHTVSKLIGSPPGYVGYTEGGQLTEAVRR------RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFK 518 (693)
Q Consensus 445 ~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~------~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~ 518 (693)
-..-+.+ +..+..++++ ....|+++||+|++....|.+|.+.||= ..+
T Consensus 89 eRGIDvV---------------Rn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEi-----------yS~ 142 (333)
T KOG0991|consen 89 ERGIDVV---------------RNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEI-----------YSN 142 (333)
T ss_pred ccccHHH---------------HHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHH-----------Hcc
Confidence 3221111 1233333332 2246999999999999999999999985 345
Q ss_pred CeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHHH
Q 005511 519 NTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIML 598 (693)
Q Consensus 519 ~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l 598 (693)
.++|.+++|....+| .++-+|| .++.|..++..++..-+....
T Consensus 143 ttRFalaCN~s~KIi------------------------------------EPIQSRC-AiLRysklsd~qiL~Rl~~v~ 185 (333)
T KOG0991|consen 143 TTRFALACNQSEKII------------------------------------EPIQSRC-AILRYSKLSDQQILKRLLEVA 185 (333)
T ss_pred cchhhhhhcchhhhh------------------------------------hhHHhhh-HhhhhcccCHHHHHHHHHHHH
Confidence 678999999766533 5678888 888888888776544332222
Q ss_pred HHHHHHHhcCCCeEEeCHHHHHHHHH
Q 005511 599 KEVFDRLKTKDIELQVTERFRERVVE 624 (693)
Q Consensus 599 ~~~~~~~~~~~~~l~~~~~~~~~l~~ 624 (693)
+ +-.+..+++.++.+..
T Consensus 186 k---------~Ekv~yt~dgLeaiif 202 (333)
T KOG0991|consen 186 K---------AEKVNYTDDGLEAIIF 202 (333)
T ss_pred H---------HhCCCCCcchHHHhhh
Confidence 2 1123366666666653
No 280
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.51 E-value=3.3e-13 Score=141.19 Aligned_cols=175 Identities=22% Similarity=0.364 Sum_probs=121.4
Q ss_pred HHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCc--ceeeeccccccc
Q 005511 370 MEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE--AMIRLDMSEFME 447 (693)
Q Consensus 370 ~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~--~~~~~~~~~~~~ 447 (693)
++..-+++++|++.+++.+...+.... .++++|+||||||||++++++++.+++.+. .++.+++++...
T Consensus 11 yrP~~~~~~~g~~~~~~~l~~~i~~~~---------~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~ 81 (319)
T PRK00440 11 YRPRTLDEIVGQEEIVERLKSYVKEKN---------MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERG 81 (319)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHhCCC---------CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccc
Confidence 334455678899999999888875321 125899999999999999999999865432 334333332111
Q ss_pred hhhhhhhcCCCCCCcCcCccchhhHHHHc-----CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEE
Q 005511 448 RHTVSKLIGSPPGYVGYTEGGQLTEAVRR-----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLL 522 (693)
Q Consensus 448 ~~~~~~l~g~~~~~~g~~~~~~l~~~~~~-----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i 522 (693)
.... ...+.+..+. ++..+|+|||+|.++...++.|+..++.. ..++.+
T Consensus 82 ~~~~---------------~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~-----------~~~~~l 135 (319)
T PRK00440 82 IDVI---------------RNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMY-----------SQNTRF 135 (319)
T ss_pred hHHH---------------HHHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcC-----------CCCCeE
Confidence 0000 0112222221 23569999999999999999999999862 235577
Q ss_pred EEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHHHHHHH
Q 005511 523 IMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVF 602 (693)
Q Consensus 523 I~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l~~~~ 602 (693)
|+++|.... +.+++.+|+ ..+.|.+++.+++..++...+...
T Consensus 136 Il~~~~~~~------------------------------------l~~~l~sr~-~~~~~~~l~~~ei~~~l~~~~~~~- 177 (319)
T PRK00440 136 ILSCNYSSK------------------------------------IIDPIQSRC-AVFRFSPLKKEAVAERLRYIAENE- 177 (319)
T ss_pred EEEeCCccc------------------------------------cchhHHHHh-heeeeCCCCHHHHHHHHHHHHHHc-
Confidence 787764332 456788998 689999999999998888766532
Q ss_pred HHHhcCCCeEEeCHHHHHHHHHh
Q 005511 603 DRLKTKDIELQVTERFRERVVEE 625 (693)
Q Consensus 603 ~~~~~~~~~l~~~~~~~~~l~~~ 625 (693)
++ .++++++++|++.
T Consensus 178 ------~~--~i~~~al~~l~~~ 192 (319)
T PRK00440 178 ------GI--EITDDALEAIYYV 192 (319)
T ss_pred ------CC--CCCHHHHHHHHHH
Confidence 43 4899999999884
No 281
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.51 E-value=4.3e-13 Score=137.48 Aligned_cols=164 Identities=21% Similarity=0.310 Sum_probs=103.7
Q ss_pred hcCCCCCccCCHHHHHHHHHHHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCC-------CCc----------
Q 005511 37 EEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTI-------EGK---------- 99 (693)
Q Consensus 37 ~~~~~~~iiG~~~~~~~l~~~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~-------~~~---------- 99 (693)
.|..|..++|++..++.+...+-.....|+||+|+||||||++|+++++.++.....+.. .+.
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 82 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTT 82 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCc
Confidence 356789999999999988765543445899999999999999999999998531110000 000
Q ss_pred ------eEEEEec----cccccCCcccchHHHHHHH---HH--HHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhh
Q 005511 100 ------KVITLDM----GLLVAGTKYRGEFEERLKK---LM--EEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKP 164 (693)
Q Consensus 100 ------~~~~~~~----~~l~~~~~~~g~~~~~l~~---~~--~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~ 164 (693)
+++.+.. ..+.++.. ++..+.. .+ +.+......+||+||++.+.+ ..++.|..
T Consensus 83 ~~~~~~p~~~~p~~~t~~~l~G~~d----~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~--------~~q~~Lle 150 (334)
T PRK13407 83 MIERPTPVVDLPLGVTEDRVVGALD----IERALTRGEKAFEPGLLARANRGYLYIDEVNLLED--------HIVDLLLD 150 (334)
T ss_pred ccccCCccccCCCCCCcceeecchh----hhhhhhcCCeeecCCceEEcCCCeEEecChHhCCH--------HHHHHHHH
Confidence 0000000 00111000 0000000 00 111223446999999999843 47888888
Q ss_pred hhcCCC---------------cEEEEEechHHHHhhhhcCHHHhccCC-ccccCCCCH-HHHHHHHHHH
Q 005511 165 SLARGE---------------LQCIGATTLDEYRKHIEKDPALERRFQ-PVKVPEPSV-DETIQILKGL 216 (693)
Q Consensus 165 ~l~~~~---------------v~vI~~t~~~~~~~~~~l~~~l~~Rf~-~i~~~~p~~-~e~~~il~~~ 216 (693)
.++.+. +++|+++|+.+. .+.+++..||. .+.+++|+. +++.+|++..
T Consensus 151 ~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~----~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~ 215 (334)
T PRK13407 151 VAQSGENVVEREGLSIRHPARFVLVGSGNPEEG----ELRPQLLDRFGLSVEVRSPRDVETRVEVIRRR 215 (334)
T ss_pred HHHcCCeEEEECCeEEecCCCEEEEecCCcccC----CCCHHHHhhcceEEEcCCCCcHHHHHHHHHHh
Confidence 876443 677777776542 47899999998 788888877 8989998864
No 282
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.51 E-value=6.4e-13 Score=143.70 Aligned_cols=242 Identities=17% Similarity=0.188 Sum_probs=141.4
Q ss_pred hccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccch------
Q 005511 375 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMER------ 448 (693)
Q Consensus 375 ~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~------ 448 (693)
+.+++||..+++.+..++. + ..+++|.||||||||++|+.++..+..... -..++...+.+-
T Consensus 191 ~~dv~Gq~~~~~al~~aa~----~-------g~~vlliG~pGsGKTtlar~l~~llp~~~~-~~~le~~~i~s~~g~~~~ 258 (499)
T TIGR00368 191 LKDIKGQQHAKRALEIAAA----G-------GHNLLLFGPPGSGKTMLASRLQGILPPLTN-EEAIETARIWSLVGKLID 258 (499)
T ss_pred HHHhcCcHHHHhhhhhhcc----C-------CCEEEEEecCCCCHHHHHHHHhcccCCCCC-cEEEeccccccchhhhcc
Confidence 3568899888666544442 1 136999999999999999999987632111 111222222110
Q ss_pred ---------------hhhhhhcCCCCCCcCcCccchhhHHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCC--
Q 005511 449 ---------------HTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSK-- 511 (693)
Q Consensus 449 ---------------~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~-- 511 (693)
.+...++|. .. ..-.+.+..+.+|||||||++.+++.+++.|++.||++.++...
T Consensus 259 ~~~~~~~Pf~~p~~s~s~~~~~gg-------g~-~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g 330 (499)
T TIGR00368 259 RKQIKQRPFRSPHHSASKPALVGG-------GP-IPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRAS 330 (499)
T ss_pred ccccccCCccccccccchhhhhCC-------cc-ccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecC
Confidence 000011110 00 01124556788899999999999999999999999999865332
Q ss_pred CCeeecCCeEEEEecCCChhhhhhcccccccccC-cCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHH
Q 005511 512 GRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLD-YDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEV 590 (693)
Q Consensus 512 ~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~-~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~ 590 (693)
+......++.+|+++|... +|+-.. ...-.+.... .......++.+|++|||.++.+++++.+++
T Consensus 331 ~~~~~pa~frlIaa~Npcp---------cg~~~~~~~~c~c~~~~-----~~~y~~~is~pllDR~dl~~~~~~~~~~~l 396 (499)
T TIGR00368 331 AKIFYPARFQLVAAMNPCP---------CGHYGGKNTHCRCSPQQ-----ISRYWNKLSGPFLDRIDLSVEVPLLPPEKL 396 (499)
T ss_pred cceeccCCeEEEEecCCcc---------cCcCCCCcccccCCHHH-----HHHHhhhccHhHHhhCCEEEEEcCCCHHHH
Confidence 2333346999999999753 232111 1111111110 112233489999999999999999876654
Q ss_pred HH---------HHHHHH---HHHHHHHhcC-CCe-------------EEeCHHHHHHHHHhccCCCCCcchHHHHHHHHH
Q 005511 591 KE---------IADIML---KEVFDRLKTK-DIE-------------LQVTERFRERVVEEGYNPSYGARPLRRAIMRLL 644 (693)
Q Consensus 591 ~~---------i~~~~l---~~~~~~~~~~-~~~-------------l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i 644 (693)
.+ +-++.. ....++++.. ++. ..+++++.+.|....-..+.++|...+.+. +
T Consensus 397 ~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilr--v 474 (499)
T TIGR00368 397 LSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILK--V 474 (499)
T ss_pred hccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHH--H
Confidence 22 222222 1222233211 011 235667776666543334577888888887 7
Q ss_pred HHHHHHHH
Q 005511 645 EDSMAEKM 652 (693)
Q Consensus 645 ~~~l~~~~ 652 (693)
...++++-
T Consensus 475 ArTiAdL~ 482 (499)
T TIGR00368 475 ARTIADLK 482 (499)
T ss_pred HHHHHhhc
Confidence 66777653
No 283
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.51 E-value=2.1e-13 Score=141.51 Aligned_cols=166 Identities=21% Similarity=0.329 Sum_probs=111.3
Q ss_pred hccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCc----ceeee-ccccccc--
Q 005511 375 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE----AMIRL-DMSEFME-- 447 (693)
Q Consensus 375 ~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~----~~~~~-~~~~~~~-- 447 (693)
+..++||+.++..+..++...+. .+.+||+||+|+|||++|+.+|+.+.+... +.... .|.....
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~grl--------~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~ 93 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGKL--------HHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWR 93 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCCC--------CeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHH
Confidence 46789999999999998876532 135999999999999999999999966321 11100 1111000
Q ss_pred ---hhhhhhh--cCCC--------CCCcCcCccchhhHHHHc----CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCC
Q 005511 448 ---RHTVSKL--IGSP--------PGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDS 510 (693)
Q Consensus 448 ---~~~~~~l--~g~~--------~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~ 510 (693)
..+..++ +..+ ...++..+.+.+.+.+.. +.+.|++|||+|.+++..+|.||+.||+
T Consensus 94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEE------ 167 (351)
T PRK09112 94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEE------ 167 (351)
T ss_pred HHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhc------
Confidence 0000011 1100 001112222334444432 3457999999999999999999999998
Q ss_pred CCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHH
Q 005511 511 KGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEV 590 (693)
Q Consensus 511 ~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~ 590 (693)
+..+++||+.|+.... +.|.+++|| ..+.|+|++.+++
T Consensus 168 -----pp~~~~fiLit~~~~~------------------------------------llptIrSRc-~~i~l~pl~~~~~ 205 (351)
T PRK09112 168 -----PPARALFILISHSSGR------------------------------------LLPTIRSRC-QPISLKPLDDDEL 205 (351)
T ss_pred -----CCCCceEEEEECChhh------------------------------------ccHHHHhhc-cEEEecCCCHHHH
Confidence 3456677777764433 568999999 8999999999999
Q ss_pred HHHHHH
Q 005511 591 KEIADI 596 (693)
Q Consensus 591 ~~i~~~ 596 (693)
.+++..
T Consensus 206 ~~~L~~ 211 (351)
T PRK09112 206 KKALSH 211 (351)
T ss_pred HHHHHH
Confidence 999875
No 284
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.51 E-value=2.4e-13 Score=134.56 Aligned_cols=163 Identities=16% Similarity=0.205 Sum_probs=115.3
Q ss_pred EEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCCcCcCccchhhHHHHcCCCEEEEEccC
Q 005511 408 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEI 487 (693)
Q Consensus 408 ~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEi 487 (693)
+++|+||+|||||++|+++++.+...+.+++.++|.++.... ..+...++. .++|+|||+
T Consensus 40 ~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~------------------~~~~~~~~~--~~lLvIDdi 99 (226)
T TIGR03420 40 FLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD------------------PEVLEGLEQ--ADLVCLDDV 99 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH------------------HHHHhhccc--CCEEEEeCh
Confidence 699999999999999999999986666788888888765321 011122222 359999999
Q ss_pred cccCHHH--HHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHh
Q 005511 488 EKAHPDV--FNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELK 565 (693)
Q Consensus 488 d~l~~~~--~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~ 565 (693)
+.++... ++.|..+++... ..+..+|++++.....+
T Consensus 100 ~~l~~~~~~~~~L~~~l~~~~----------~~~~~iIits~~~~~~~-------------------------------- 137 (226)
T TIGR03420 100 EAIAGQPEWQEALFHLYNRVR----------EAGGRLLIAGRAAPAQL-------------------------------- 137 (226)
T ss_pred hhhcCChHHHHHHHHHHHHHH----------HcCCeEEEECCCChHHC--------------------------------
Confidence 9998744 888888876421 01235777777443211
Q ss_pred hcCchhHhhccC--cEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHHH
Q 005511 566 QYFRPEFLNRLD--EMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRL 643 (693)
Q Consensus 566 ~~~~~~l~~R~~--~~v~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~ 643 (693)
....+.|.+|+. ..+.++|++.+++..++...+.. .+ +.++++++++|... |+++ .|+|++++++.
T Consensus 138 ~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~-------~~--~~~~~~~l~~L~~~-~~gn--~r~L~~~l~~~ 205 (226)
T TIGR03420 138 PLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAAR-------RG--LQLPDEVADYLLRH-GSRD--MGSLMALLDAL 205 (226)
T ss_pred CcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHh-ccCC--HHHHHHHHHHH
Confidence 002378888884 57999999999999888655432 13 45999999999984 6666 89999999864
Q ss_pred H
Q 005511 644 L 644 (693)
Q Consensus 644 i 644 (693)
-
T Consensus 206 ~ 206 (226)
T TIGR03420 206 D 206 (226)
T ss_pred H
Confidence 4
No 285
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.3e-13 Score=140.92 Aligned_cols=157 Identities=18% Similarity=0.231 Sum_probs=113.3
Q ss_pred hcCCCCCccCCHHHHHHHHHH-------------HhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEE
Q 005511 37 EEGKLDPVVGRQPQIERVVQI-------------LGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVIT 103 (693)
Q Consensus 37 ~~~~~~~iiG~~~~~~~l~~~-------------l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 103 (693)
+|.+|+.++=..+.++++.+- .+.+.+++.|||||||||||+++.|+|..| +..++.
T Consensus 196 HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L----------~ydIyd 265 (457)
T KOG0743|consen 196 HPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYL----------NYDIYD 265 (457)
T ss_pred CCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhc----------CCceEE
Confidence 456788877776666665542 234778999999999999999999999999 778888
Q ss_pred EeccccccCCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCCh----------HhHHHHHhhhh----cC-
Q 005511 104 LDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGA----------IDAANILKPSL----AR- 168 (693)
Q Consensus 104 ~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~----------~~~~~~L~~~l----~~- 168 (693)
++.+..... . .++.++.... +..||+|+|||.-+........ .-.++-|+..+ ..
T Consensus 266 LeLt~v~~n------~--dLr~LL~~t~--~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSsc 335 (457)
T KOG0743|consen 266 LELTEVKLD------S--DLRHLLLATP--NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSC 335 (457)
T ss_pred eeeccccCc------H--HHHHHHHhCC--CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccC
Confidence 887655421 1 1677776644 4559999999987542221111 11222233333 22
Q ss_pred -CCcEEEEEechHHHHhhhhcCHHHhc--cCC-ccccCCCCHHHHHHHHHHHHH
Q 005511 169 -GELQCIGATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRE 218 (693)
Q Consensus 169 -~~v~vI~~t~~~~~~~~~~l~~~l~~--Rf~-~i~~~~p~~~e~~~il~~~~~ 218 (693)
++-++|+|||+.+ .+||+|.| |++ +|++...+.++...+...++.
T Consensus 336 g~ERIivFTTNh~E-----kLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~ 384 (457)
T KOG0743|consen 336 GDERIIVFTTNHKE-----KLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLG 384 (457)
T ss_pred CCceEEEEecCChh-----hcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcC
Confidence 3678999999998 89999999 998 999999999998887776553
No 286
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.49 E-value=1.6e-14 Score=123.47 Aligned_cols=106 Identities=30% Similarity=0.445 Sum_probs=65.6
Q ss_pred EEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCCcCcC-----ccchhhHHHHcCCCEEE
Q 005511 408 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYT-----EGGQLTEAVRRRPYTVV 482 (693)
Q Consensus 408 ~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~-----~~~~l~~~~~~~~~~vl 482 (693)
|+||.|+||+|||++|+++|+.+ +..|.++.+..- ...++++|.+- |...+ ..+.++ ..|+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~---~~~f~RIq~tpd---llPsDi~G~~v-~~~~~~~f~~~~GPif-------~~il 66 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSL---GLSFKRIQFTPD---LLPSDILGFPV-YDQETGEFEFRPGPIF-------TNIL 66 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHT---T--EEEEE--TT-----HHHHHEEEE-EETTTTEEEEEE-TT--------SSEE
T ss_pred CEeeECCCccHHHHHHHHHHHHc---CCceeEEEecCC---CCcccceeeee-eccCCCeeEeecChhh-------hcee
Confidence 59999999999999999999998 778888877532 23445555421 10000 012222 2599
Q ss_pred EEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCC-eEEEEecCC
Q 005511 483 LFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKN-TLLIMTSNV 528 (693)
Q Consensus 483 ~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~-~~iI~~tn~ 528 (693)
++||+++++|.+|++||++|++++++. .|.++..++ .++|+|.|.
T Consensus 67 l~DEiNrappktQsAlLeam~Er~Vt~-~g~~~~lp~pf~ViATqNp 112 (131)
T PF07726_consen 67 LADEINRAPPKTQSALLEAMEERQVTI-DGQTYPLPDPFFVIATQNP 112 (131)
T ss_dssp EEETGGGS-HHHHHHHHHHHHHSEEEE-TTEEEE--SS-EEEEEE-T
T ss_pred eecccccCCHHHHHHHHHHHHcCeEEe-CCEEEECCCcEEEEEecCc
Confidence 999999999999999999999999884 456666665 566667674
No 287
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.49 E-value=1.1e-12 Score=129.82 Aligned_cols=184 Identities=18% Similarity=0.202 Sum_probs=120.8
Q ss_pred hcCCCCCcc-C-CHHHHHHHHHHHh-cCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCC
Q 005511 37 EEGKLDPVV-G-RQPQIERVVQILG-RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGT 113 (693)
Q Consensus 37 ~~~~~~~ii-G-~~~~~~~l~~~l~-~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (693)
++.+||+++ | .+..+..+..+.. .....+++|+||+|||||++++++++.+.. .+..++++++..+..
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~-------~~~~~~~i~~~~~~~-- 83 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASY-------GGRNARYLDAASPLL-- 83 (227)
T ss_pred ChhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHh-------CCCcEEEEehHHhHH--
Confidence 456789987 3 3455566666654 244578999999999999999999998744 255677787655421
Q ss_pred cccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCCcEEEEEechHHHHhhhhcCHHHh
Q 005511 114 KYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYRKHIEKDPALE 193 (693)
Q Consensus 114 ~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~t~~~~~~~~~~l~~~l~ 193 (693)
.+.. .....+|+|||+|.+.+. ........+....+.+..++|.+++.++. ...+.+.+.
T Consensus 84 ------------~~~~--~~~~~~liiDdi~~l~~~----~~~~L~~~~~~~~~~~~~~vl~~~~~~~~--~~~l~~~L~ 143 (227)
T PRK08903 84 ------------AFDF--DPEAELYAVDDVERLDDA----QQIALFNLFNRVRAHGQGALLVAGPAAPL--ALPLREDLR 143 (227)
T ss_pred ------------HHhh--cccCCEEEEeChhhcCch----HHHHHHHHHHHHHHcCCcEEEEeCCCCHH--hCCCCHHHH
Confidence 0111 123448999999987432 11222333333334555445555554331 223568899
Q ss_pred ccC---CccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhhhhHHHH
Q 005511 194 RRF---QPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDE 259 (693)
Q Consensus 194 ~Rf---~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~ 259 (693)
+|| ..+.+++|+.+++..+++.... ..++.+++++++.+++...|.+ +.+..+++.
T Consensus 144 sr~~~~~~i~l~pl~~~~~~~~l~~~~~----~~~v~l~~~al~~L~~~~~gn~------~~l~~~l~~ 202 (227)
T PRK08903 144 TRLGWGLVYELKPLSDADKIAALKAAAA----ERGLQLADEVPDYLLTHFRRDM------PSLMALLDA 202 (227)
T ss_pred HHHhcCeEEEecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHhccCCH------HHHHHHHHH
Confidence 888 3889999999988888886655 3568999999999998665543 555555554
No 288
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.1e-13 Score=133.57 Aligned_cols=163 Identities=20% Similarity=0.323 Sum_probs=112.0
Q ss_pred hccccChHHHHHHHHHHHHHHh----hcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhh
Q 005511 375 HKRVIGQDEAVKAISRAIRRAR----VGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHT 450 (693)
Q Consensus 375 ~~~v~g~~~~~~~l~~~~~~~~----~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~ 450 (693)
++.+-|.-..+..+.+.+..+. ....-.-+|+..++||||||+|||.+|+++|..+ +.+|+.+-.+++.++
T Consensus 131 ~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~m---g~nfl~v~ss~lv~k-- 205 (388)
T KOG0651|consen 131 FENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATM---GVNFLKVVSSALVDK-- 205 (388)
T ss_pred HHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhc---CCceEEeeHhhhhhh--
Confidence 4455565556555555553321 1111111233469999999999999999999998 888888888877754
Q ss_pred hhhhcCCCCCCcCcCcc--chhhHHHHcCCCEEEEEccCccc-----------CHHHHHHHHHHhhcceeeCCCCCeeec
Q 005511 451 VSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFDEIEKA-----------HPDVFNMMLQILEDGRLTDSKGRTVDF 517 (693)
Q Consensus 451 ~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~l-----------~~~~~~~Ll~~le~~~~~~~~~~~~~~ 517 (693)
|.|+..+ ++.+..++...+||+|+||+|.. +..+|..|..+++.=.-.+ ..
T Consensus 206 ----------yiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd------~l 269 (388)
T KOG0651|consen 206 ----------YIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFD------TL 269 (388)
T ss_pred ----------hcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccch------hc
Confidence 8887754 55556666666899999999986 4568888888776311000 12
Q ss_pred CCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHh--hccCcEEEcCCCCHHHHHHHH
Q 005511 518 KNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFL--NRLDEMIVFRQLTKLEVKEIA 594 (693)
Q Consensus 518 ~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~--~R~~~~v~f~~l~~~~~~~i~ 594 (693)
..+-+|+|||..+. +.|+|+ +|+|..++.+-+.......|+
T Consensus 270 ~rVk~ImatNrpdt------------------------------------LdpaLlRpGRldrk~~iPlpne~~r~~I~ 312 (388)
T KOG0651|consen 270 HRVKTIMATNRPDT------------------------------------LDPALLRPGRLDRKVEIPLPNEQARLGIL 312 (388)
T ss_pred ccccEEEecCCccc------------------------------------cchhhcCCccccceeccCCcchhhceeeE
Confidence 46679999997765 788888 799888888866655544443
No 289
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.48 E-value=2.3e-13 Score=142.06 Aligned_cols=163 Identities=21% Similarity=0.381 Sum_probs=111.6
Q ss_pred hccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCc-c---ee----eec-cccc
Q 005511 375 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE-A---MI----RLD-MSEF 445 (693)
Q Consensus 375 ~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~-~---~~----~~~-~~~~ 445 (693)
+.+++||+.+++.+.+++...+.. +.+||+||+|+||+++|.++|+.+++... . +. .+. |...
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~rl~--------HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c 89 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGRLH--------HAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDH 89 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCCCC--------ceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCC
Confidence 457899999999999888765321 35999999999999999999999975431 0 00 000 1110
Q ss_pred cchhhhhhhc--CCCCC-----------------CcCcCccchhhHHHHc----CCCEEEEEccCcccCHHHHHHHHHHh
Q 005511 446 MERHTVSKLI--GSPPG-----------------YVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQIL 502 (693)
Q Consensus 446 ~~~~~~~~l~--g~~~~-----------------~~g~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~l 502 (693)
..-..+ |..++ .++..+.+.+.+.+.. ..+.|++|||+|.+++..+|.||+.+
T Consensus 90 ----~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~L 165 (365)
T PRK07471 90 ----PVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVL 165 (365)
T ss_pred ----hHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHH
Confidence 000000 11111 1111112333333322 34579999999999999999999999
Q ss_pred hcceeeCCCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEc
Q 005511 503 EDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVF 582 (693)
Q Consensus 503 e~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f 582 (693)
|+ +..+++||++|+.... +.|.+.+|| ..+.|
T Consensus 166 Ee-----------pp~~~~~IL~t~~~~~------------------------------------llpti~SRc-~~i~l 197 (365)
T PRK07471 166 EE-----------PPARSLFLLVSHAPAR------------------------------------LLPTIRSRC-RKLRL 197 (365)
T ss_pred hc-----------CCCCeEEEEEECCchh------------------------------------chHHhhccc-eEEEC
Confidence 98 3456778888875443 568899999 99999
Q ss_pred CCCCHHHHHHHHHHH
Q 005511 583 RQLTKLEVKEIADIM 597 (693)
Q Consensus 583 ~~l~~~~~~~i~~~~ 597 (693)
.|++.+++.+++...
T Consensus 198 ~~l~~~~i~~~L~~~ 212 (365)
T PRK07471 198 RPLAPEDVIDALAAA 212 (365)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999998764
No 290
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=7.9e-14 Score=143.06 Aligned_cols=195 Identities=21% Similarity=0.326 Sum_probs=137.8
Q ss_pred EEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCCcCcCcc--chhhHHHHc--------C
Q 005511 408 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG--GQLTEAVRR--------R 477 (693)
Q Consensus 408 ~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~--------~ 477 (693)
++|||||||||||.+||-|.++++.+... .+|.++++++ |||++|. +.||.-++. +
T Consensus 258 GiLLyGPPGTGKTLiARqIGkMLNArePK--IVNGPeIL~K------------YVGeSE~NvR~LFaDAEeE~r~~g~~S 323 (744)
T KOG0741|consen 258 GILLYGPPGTGKTLIARQIGKMLNAREPK--IVNGPEILNK------------YVGESEENVRKLFADAEEEQRRLGANS 323 (744)
T ss_pred eEEEECCCCCChhHHHHHHHHHhcCCCCc--ccCcHHHHHH------------hhcccHHHHHHHHHhHHHHHHhhCccC
Confidence 59999999999999999999999654433 3688888876 9999986 566654432 2
Q ss_pred CCEEEEEccCccc-------------CHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhccccccccc
Q 005511 478 PYTVVLFDEIEKA-------------HPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDL 544 (693)
Q Consensus 478 ~~~vl~iDEid~l-------------~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~ 544 (693)
.-.|++|||+|.+ +..++|+||.-|++=. ..+|+++|.-||..+-
T Consensus 324 gLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVe---------qLNNILVIGMTNR~Dl------------- 381 (744)
T KOG0741|consen 324 GLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVE---------QLNNILVIGMTNRKDL------------- 381 (744)
T ss_pred CceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHH---------hhhcEEEEeccCchhh-------------
Confidence 2369999999987 4569999999998622 4568999999985442
Q ss_pred CcCcccchHHHHHHHHHHHHhhcCchhHh--hccCcEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCHHH-HHH
Q 005511 545 DYDEKDSSYNRIKSLVTEELKQYFRPEFL--NRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERF-RER 621 (693)
Q Consensus 545 ~~~~~~~~~~~l~~~~~~~l~~~~~~~l~--~R~~~~v~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~-~~~ 621 (693)
++.+|+ +|+-..+....|++.-..+|++.+-++.... +. +++++ ++.
T Consensus 382 -----------------------IDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~----~~---l~~dVdl~e 431 (744)
T KOG0741|consen 382 -----------------------IDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMREN----NK---LSADVDLKE 431 (744)
T ss_pred -----------------------HHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhc----CC---CCCCcCHHH
Confidence 566777 7996678888999999899987665544322 11 22222 345
Q ss_pred HHHhccCCCCCcchHHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEcCCCcEEE
Q 005511 622 VVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVTV 675 (693)
Q Consensus 622 l~~~~~~~~~g~r~l~~~i~~~i~~~l~~~~l~~~~~~~~~~~v~~~~~~~~~~ 675 (693)
|+. ..+||...+|.-.+..+..-++-+ .++.+.+..++.++..++.+
T Consensus 432 lA~--lTKNfSGAEleglVksA~S~A~nR-----~vk~~~~~~~~~~~~e~lkV 478 (744)
T KOG0741|consen 432 LAA--LTKNFSGAELEGLVKSAQSFAMNR-----HVKAGGKVEVDPVAIENLKV 478 (744)
T ss_pred HHH--HhcCCchhHHHHHHHHHHHHHHHh-----hhccCcceecCchhhhheee
Confidence 555 567777778888777666655544 34555556665555555554
No 291
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.48 E-value=9.1e-13 Score=130.31 Aligned_cols=159 Identities=15% Similarity=0.180 Sum_probs=114.7
Q ss_pred EEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCCcCcCccchhhHHHHcCCCEEEEEccC
Q 005511 408 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEI 487 (693)
Q Consensus 408 ~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEi 487 (693)
+++|+||+|||||++|+++++.+...+.+++.+++.+..... .. .....+|+|||+
T Consensus 44 ~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~~----------------------~~--~~~~~~liiDdi 99 (227)
T PRK08903 44 FFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLAF----------------------DF--DPEAELYAVDDV 99 (227)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHHH----------------------hh--cccCCEEEEeCh
Confidence 699999999999999999999986677788888887653210 00 122468999999
Q ss_pred cccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhc
Q 005511 488 EKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQY 567 (693)
Q Consensus 488 d~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~ 567 (693)
+.+++..+..|+.+++... .....++|++++..+.. ..
T Consensus 100 ~~l~~~~~~~L~~~~~~~~---------~~~~~~vl~~~~~~~~~---------------------------------~~ 137 (227)
T PRK08903 100 ERLDDAQQIALFNLFNRVR---------AHGQGALLVAGPAAPLA---------------------------------LP 137 (227)
T ss_pred hhcCchHHHHHHHHHHHHH---------HcCCcEEEEeCCCCHHh---------------------------------CC
Confidence 9999999999999886521 01123466666533210 01
Q ss_pred CchhHhhcc--CcEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHHHH
Q 005511 568 FRPEFLNRL--DEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLL 644 (693)
Q Consensus 568 ~~~~l~~R~--~~~v~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i 644 (693)
+.++|.+|| ...+.++||+.++...++...... .+ +.++++++++|.+ .|+++ .|+|.+.++.+-
T Consensus 138 l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~-------~~--v~l~~~al~~L~~-~~~gn--~~~l~~~l~~l~ 204 (227)
T PRK08903 138 LREDLRTRLGWGLVYELKPLSDADKIAALKAAAAE-------RG--LQLADEVPDYLLT-HFRRD--MPSLMALLDALD 204 (227)
T ss_pred CCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHH-hccCC--HHHHHHHHHHHH
Confidence 568899998 358999999998877766543322 24 5599999999998 47776 889999988643
No 292
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.48 E-value=5.5e-13 Score=154.89 Aligned_cols=214 Identities=18% Similarity=0.208 Sum_probs=152.0
Q ss_pred CCCcccccccccCCCCCCCCCccHHHHHhhhhhhhhcCCCCCccCCHHHHHHHHHHHhc--------CCC-CCeEEECCC
Q 005511 2 VGESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGR--------RTK-NNPCLIGEP 72 (693)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~--------~~~-~~vLl~Gp~ 72 (693)
|.+++++|+.+|......+....|......|.+. ++||+..++.+...+.. ..| ..+||+||+
T Consensus 477 i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~--------v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~ 548 (821)
T CHL00095 477 IAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKR--------IIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPT 548 (821)
T ss_pred HHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCc--------CcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCC
Confidence 3466788899998888888777777776666655 99999999999887752 112 347899999
Q ss_pred CChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccC----------CcccchHHHHHHHHHHHHHhCCCeEEEEec
Q 005511 73 GVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAG----------TKYRGEFEERLKKLMEEIKQSDEIILFIDE 142 (693)
Q Consensus 73 GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~g~~~~~l~~~~~~~~~~~~~vL~iDE 142 (693)
|||||++|+++|+.+... ...++.++++.+... ..|.|-.+ ...+...++.++.+|++|||
T Consensus 549 GvGKt~lA~~LA~~l~~~-------~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDe 619 (821)
T CHL00095 549 GVGKTELTKALASYFFGS-------EDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDE 619 (821)
T ss_pred CCcHHHHHHHHHHHhcCC-------ccceEEEEchhccccccHHHhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECC
Confidence 999999999999998542 346778877655321 11222111 12344555667778999999
Q ss_pred cchhhhCCCCCChHhHHHHHhhhhcCC-------------CcEEEEEechHHH-----------------------H---
Q 005511 143 VHTLIGAGAAEGAIDAANILKPSLARG-------------ELQCIGATTLDEY-----------------------R--- 183 (693)
Q Consensus 143 id~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~vI~~t~~~~~-----------------------~--- 183 (693)
+|.+. .++++.|+++++.| +.++|+|||...- .
T Consensus 620 ieka~--------~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~ 691 (821)
T CHL00095 620 IEKAH--------PDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLS 691 (821)
T ss_pred hhhCC--------HHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHH
Confidence 99984 44899999999864 3567888774210 0
Q ss_pred h------hhhcCHHHhccCC-ccccCCCCHHHHHHHHHHHHHhHh---hhc--CcccChHHHHHHHHhh
Q 005511 184 K------HIEKDPALERRFQ-PVKVPEPSVDETIQILKGLRERYE---IHH--KLRYTDEALVSAAQLS 240 (693)
Q Consensus 184 ~------~~~l~~~l~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~---~~~--~~~~~~~~l~~l~~~~ 240 (693)
. .-...|.|++|++ +|.|.+++.++..+|++..+.++. ... .+.+++++.+.++...
T Consensus 692 ~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~ 760 (821)
T CHL00095 692 NLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEG 760 (821)
T ss_pred HHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhc
Confidence 0 0014578999996 899999999999999998776431 122 3578899999988863
No 293
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.47 E-value=2.4e-12 Score=134.52 Aligned_cols=233 Identities=19% Similarity=0.301 Sum_probs=139.5
Q ss_pred hccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhh
Q 005511 375 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 454 (693)
Q Consensus 375 ~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l 454 (693)
.+.+++.+..++.+...+... .+++|+||||||||++|+.+|..+.+ ...+..+++.++....+..++
T Consensus 174 l~d~~i~e~~le~l~~~L~~~-----------~~iil~GppGtGKT~lA~~la~~l~~-~~~~~~v~~VtFHpsySYeDF 241 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIK-----------KNIILQGPPGVGKTFVARRLAYLLTG-EKAPQRVNMVQFHQSYSYEDF 241 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcC-----------CCEEEECCCCCCHHHHHHHHHHHhcC-CcccceeeEEeecccccHHHH
Confidence 345777788878777776643 26999999999999999999999854 234555666666666666677
Q ss_pred c-CCCCCCcCcCcc-chhhHH---HHcC--CCEEEEEccCcccCHH-HHHHHHHHhhcce------eeC--CC---CCee
Q 005511 455 I-GSPPGYVGYTEG-GQLTEA---VRRR--PYTVVLFDEIEKAHPD-VFNMMLQILEDGR------LTD--SK---GRTV 515 (693)
Q Consensus 455 ~-g~~~~~~g~~~~-~~l~~~---~~~~--~~~vl~iDEid~l~~~-~~~~Ll~~le~~~------~~~--~~---~~~~ 515 (693)
+ |..++++|.... +.+.++ +... .+.||||||+++.+.+ +...++++||... +.. .. ..-.
T Consensus 242 I~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~ 321 (459)
T PRK11331 242 IQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFY 321 (459)
T ss_pred hcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeecccccccccc
Confidence 6 444555665433 233222 2222 3689999999999865 6889999998632 111 11 1223
Q ss_pred ecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCC-CCHHHHHHH-
Q 005511 516 DFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQ-LTKLEVKEI- 593 (693)
Q Consensus 516 ~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~-l~~~~~~~i- 593 (693)
.+.|+.||+|+|.....+. .++.+|++|| ..|.+.| ++...+...
T Consensus 322 iP~Nl~IIgTMNt~Drs~~--------------------------------~lD~AlrRRF-~fi~i~p~~~~~~~~~~l 368 (459)
T PRK11331 322 VPENVYIIGLMNTADRSLA--------------------------------VVDYALRRRF-SFIDIEPGFDTPQFRNFL 368 (459)
T ss_pred CCCCeEEEEecCccccchh--------------------------------hccHHHHhhh-heEEecCCCChHHHHHHH
Confidence 4569999999996553211 1789999999 6666665 444332222
Q ss_pred ------------HHHHHHHHHHHHhc----CCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHHHHHHHHHHHHHh
Q 005511 594 ------------ADIMLKEVFDRLKT----KDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLA 654 (693)
Q Consensus 594 ------------~~~~l~~~~~~~~~----~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~~~l~~~~l~ 654 (693)
+...+..+++++.. .|....+....+-...+.+. ..-...|..+++..|...|-+++..
T Consensus 369 ~~~~~~~~~~~~l~~~l~~LN~~I~~~~~~lg~~~~IGhsyf~~~~~~~~--~~~~~~l~~i~~~~I~PlL~EY~~d 443 (459)
T PRK11331 369 LNKKAEPSFVESLCQKMNELNQEISKEATILGKGFRIGHSYFCCGLEDGT--SPDTQWLKEIVMTDIAPLLEEYFFD 443 (459)
T ss_pred HhcccCchhHHHHHHHHHHHHHHHHhhhhccCCCeEEeeeeecccccccc--chhHHHHHHHHHhhhhhhHHHHcCC
Confidence 22334455555532 13333333322110000000 0012346777777777777776664
No 294
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.47 E-value=6.5e-13 Score=153.89 Aligned_cols=213 Identities=20% Similarity=0.220 Sum_probs=148.7
Q ss_pred CCCcccccccccCCCCCCCCCccHHHHHhhhhhhhhcCCCCCccCCHHHHHHHHHHHhcC--------CC-CCeEEECCC
Q 005511 2 VGESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRR--------TK-NNPCLIGEP 72 (693)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~--------~~-~~vLl~Gp~ 72 (693)
|++++++|+.+|.+....+....|......+.+. ++|++..++.+...+... .| ..+||+||+
T Consensus 536 i~~vv~~~tgip~~~~~~~~~~~l~~l~~~l~~~--------viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~ 607 (857)
T PRK10865 536 IAEVLARWTGIPVSRMLESEREKLLRMEQELHHR--------VIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPT 607 (857)
T ss_pred HHHHHHHHHCCCchhhhhhHHHHHHHHHHHhCCe--------EeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCC
Confidence 3467789999999988888877777666555544 899999999988876531 12 358999999
Q ss_pred CChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccC----------CcccchHHHHHHHHHHHHHhCCCeEEEEec
Q 005511 73 GVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAG----------TKYRGEFEERLKKLMEEIKQSDEIILFIDE 142 (693)
Q Consensus 73 GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~g~~~~~l~~~~~~~~~~~~~vL~iDE 142 (693)
|||||++|+++++.+.. .+..++.++++.+... ..+.|..+ -..+...++..+..+|+|||
T Consensus 608 G~GKT~lA~aLa~~l~~-------~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~--~g~l~~~v~~~p~~vLllDE 678 (857)
T PRK10865 608 GVGKTELCKALANFMFD-------SDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEE--GGYLTEAVRRRPYSVILLDE 678 (857)
T ss_pred CCCHHHHHHHHHHHhhc-------CCCcEEEEEhHHhhhhhhHHHHhCCCCcccccch--hHHHHHHHHhCCCCeEEEee
Confidence 99999999999998853 2446788887665321 11112111 11123334455567999999
Q ss_pred cchhhhCCCCCChHhHHHHHhhhhcCCC-------------cEEEEEechH--HH------------Hh------hhhcC
Q 005511 143 VHTLIGAGAAEGAIDAANILKPSLARGE-------------LQCIGATTLD--EY------------RK------HIEKD 189 (693)
Q Consensus 143 id~l~~~~~~~~~~~~~~~L~~~l~~~~-------------v~vI~~t~~~--~~------------~~------~~~l~ 189 (693)
++.+. .++++.|.++++.+. .++|++||.. .+ .. .-.+.
T Consensus 679 ieka~--------~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 750 (857)
T PRK10865 679 VEKAH--------PDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFR 750 (857)
T ss_pred hhhCC--------HHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHccccc
Confidence 99884 447888888887542 3478888752 10 00 01246
Q ss_pred HHHhccCC-ccccCCCCHHHHHHHHHHHHHhHhh-----hcCcccChHHHHHHHHh
Q 005511 190 PALERRFQ-PVKVPEPSVDETIQILKGLRERYEI-----HHKLRYTDEALVSAAQL 239 (693)
Q Consensus 190 ~~l~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~-----~~~~~~~~~~l~~l~~~ 239 (693)
|+|.+|++ .+.|.+++.++..+|++..+.+... ...+.+++++++.++..
T Consensus 751 PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~ 806 (857)
T PRK10865 751 PEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSEN 806 (857)
T ss_pred HHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHc
Confidence 89999996 8899999999999999987765421 23456899999988874
No 295
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.47 E-value=1.4e-12 Score=124.59 Aligned_cols=110 Identities=26% Similarity=0.333 Sum_probs=85.4
Q ss_pred CEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhh---cccccccccCcCcccchHHH
Q 005511 479 YTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEK---GGRRIGFDLDYDEKDSSYNR 555 (693)
Q Consensus 479 ~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~---~~~~~~f~~~~~~~~~~~~~ 555 (693)
+|||||||++.++-+....|.+.+|... -.++|++||.+-..+.. ....+|
T Consensus 297 PGVLFIDEVhMLDiEcFTyL~kalES~i------------aPivifAsNrG~~~irGt~d~~sPhG-------------- 350 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDIECFTYLHKALESPI------------APIVIFASNRGMCTIRGTEDILSPHG-------------- 350 (456)
T ss_pred CcceEeeehhhhhhHHHHHHHHHhcCCC------------CceEEEecCCcceeecCCcCCCCCCC--------------
Confidence 6799999999999999999999999743 23799999987655432 122222
Q ss_pred HHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcch
Q 005511 556 IKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARP 635 (693)
Q Consensus 556 l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~ 635 (693)
++++|++|+ .+|...+++.+++++|+....+. -.+.+++++++.|...+. -+.
T Consensus 351 ------------ip~dllDRl-~Iirt~~y~~~e~r~Ii~~Ra~~---------E~l~~~e~a~~~l~~~gt-----~ts 403 (456)
T KOG1942|consen 351 ------------IPPDLLDRL-LIIRTLPYDEEEIRQIIKIRAQV---------EGLQVEEEALDLLAEIGT-----STS 403 (456)
T ss_pred ------------CCHHHhhhe-eEEeeccCCHHHHHHHHHHHHhh---------hcceecHHHHHHHHhhcc-----chh
Confidence 789999999 99999999999999999765542 235699999999998533 344
Q ss_pred HHHHHH
Q 005511 636 LRRAIM 641 (693)
Q Consensus 636 l~~~i~ 641 (693)
|+-+++
T Consensus 404 LRy~vq 409 (456)
T KOG1942|consen 404 LRYAVQ 409 (456)
T ss_pred HHHHHH
Confidence 666666
No 296
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.47 E-value=3.1e-12 Score=126.28 Aligned_cols=223 Identities=21% Similarity=0.272 Sum_probs=152.1
Q ss_pred hhhhcCCCCCccCCHHHH---HHHHHHHhc---CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEecc
Q 005511 34 KLAEEGKLDPVVGRQPQI---ERVVQILGR---RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMG 107 (693)
Q Consensus 34 ~~~~~~~~~~iiG~~~~~---~~l~~~l~~---~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 107 (693)
++.+.-.=+..||..... +.|.+++.. ...+|+||+|++|.|||++++.+++.......++ ....+|+.+.+.
T Consensus 26 eRI~~i~~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~-~~~~PVv~vq~P 104 (302)
T PF05621_consen 26 ERIAYIRADRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDED-AERIPVVYVQMP 104 (302)
T ss_pred HHHHHHhcCCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCC-CccccEEEEecC
Confidence 344444556789986544 445555543 4457999999999999999999998765433222 234578887752
Q ss_pred --------------ccccCCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCCcEE
Q 005511 108 --------------LLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQC 173 (693)
Q Consensus 108 --------------~l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~v 173 (693)
.+..+.+........-..+...++..+..+|+|||+|.++. +.......+.++|+.+.+.-++.+
T Consensus 105 ~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLa-Gs~~~qr~~Ln~LK~L~NeL~ipi 183 (302)
T PF05621_consen 105 PEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLA-GSYRKQREFLNALKFLGNELQIPI 183 (302)
T ss_pred CCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhc-ccHHHHHHHHHHHHHHhhccCCCe
Confidence 11222222222333333444555667788999999999873 344456778999999988889999
Q ss_pred EEEechHHHHhhhhcCHHHhccCCccccCCCCHH-HHHHHHHHHHHhHhhhcCcccC-hHHHHHHHHhhhhhhcccCCch
Q 005511 174 IGATTLDEYRKHIEKDPALERRFQPVKVPEPSVD-ETIQILKGLRERYEIHHKLRYT-DEALVSAAQLSYQYISDRFLPD 251 (693)
Q Consensus 174 I~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~-e~~~il~~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~ 251 (693)
|++++...+. .+..|+.+.+||..+.+|.+..+ +...++..+-..++......+. ++....+...+.|.+ +
T Consensus 184 V~vGt~~A~~-al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i------G 256 (302)
T PF05621_consen 184 VGVGTREAYR-ALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI------G 256 (302)
T ss_pred EEeccHHHHH-HhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch------H
Confidence 9999887764 45689999999999999999875 5566666666555544444444 455678888898887 5
Q ss_pred hhhhHHHHHhhHHH
Q 005511 252 KAIDLIDEAGSRVR 265 (693)
Q Consensus 252 ~~~~ll~~a~~~~~ 265 (693)
....++..|+..+.
T Consensus 257 ~l~~ll~~aA~~AI 270 (302)
T PF05621_consen 257 ELSRLLNAAAIAAI 270 (302)
T ss_pred HHHHHHHHHHHHHH
Confidence 66777777765543
No 297
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=4.5e-13 Score=129.91 Aligned_cols=138 Identities=25% Similarity=0.381 Sum_probs=103.0
Q ss_pred EEEEeccCCCcHHHHHHHHHHHhc------CCCcceeeeccccccchhhhhhhcCCCCCCcCcCcc--chhh----HHHH
Q 005511 408 SFIFSGPTGVGKSELAKALAAYYF------GSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG--GQLT----EAVR 475 (693)
Q Consensus 408 ~iLl~Gp~GtGKt~lA~~la~~l~------~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~--~~l~----~~~~ 475 (693)
-+|++||||||||++.+++|+.+. -....++.+++..+.++ |.+++-+ ..+| +.+.
T Consensus 179 liLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSK------------WFsESgKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 179 LILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSK------------WFSESGKLVAKMFQKIQELVE 246 (423)
T ss_pred EEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHH------------HHhhhhhHHHHHHHHHHHHHh
Confidence 489999999999999999999981 12345677777666544 4444432 2233 2333
Q ss_pred cCCCE--EEEEccCcccC---------------HHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhccc
Q 005511 476 RRPYT--VVLFDEIEKAH---------------PDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGR 538 (693)
Q Consensus 476 ~~~~~--vl~iDEid~l~---------------~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~ 538 (693)
. +++ .++|||++++. -.++|+||+.|+.=+ .++|+++.+|+|....
T Consensus 247 d-~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK---------~~~NvliL~TSNl~~s------- 309 (423)
T KOG0744|consen 247 D-RGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLK---------RYPNVLILATSNLTDS------- 309 (423)
T ss_pred C-CCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhc---------cCCCEEEEeccchHHH-------
Confidence 2 333 46799999982 248999999998732 3568889899886554
Q ss_pred ccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHHHHHHHH
Q 005511 539 RIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFD 603 (693)
Q Consensus 539 ~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l~~~~~ 603 (693)
++.+|++|-|...+..||+.+.+.+|++..+.++..
T Consensus 310 -----------------------------iD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~~ 345 (423)
T KOG0744|consen 310 -----------------------------IDVAFVDRADIVFYVGPPTAEAIYEILKSCIEELIS 345 (423)
T ss_pred -----------------------------HHHHhhhHhhheeecCCccHHHHHHHHHHHHHHHHh
Confidence 788999999999999999999999999999887654
No 298
>PRK06893 DNA replication initiation factor; Validated
Probab=99.46 E-value=1.3e-12 Score=128.69 Aligned_cols=163 Identities=16% Similarity=0.232 Sum_probs=108.0
Q ss_pred EEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCCcCcCccchhhHHHHcCCCEEEEEccC
Q 005511 408 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEI 487 (693)
Q Consensus 408 ~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEi 487 (693)
.++|+||||||||++++++++.+...+.....+.+...... . ..+.+.++ ...+|+|||+
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~--------------~----~~~~~~~~--~~dlLilDDi 100 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYF--------------S----PAVLENLE--QQDLVCLDDL 100 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhh--------------h----HHHHhhcc--cCCEEEEeCh
Confidence 58999999999999999999987544444444444321100 0 11122222 2359999999
Q ss_pred cccC--HHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHh
Q 005511 488 EKAH--PDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELK 565 (693)
Q Consensus 488 d~l~--~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~ 565 (693)
+.+. +..+..|+.+++... .....++|+|+|..+..+..
T Consensus 101 ~~~~~~~~~~~~l~~l~n~~~---------~~~~~illits~~~p~~l~~------------------------------ 141 (229)
T PRK06893 101 QAVIGNEEWELAIFDLFNRIK---------EQGKTLLLISADCSPHALSI------------------------------ 141 (229)
T ss_pred hhhcCChHHHHHHHHHHHHHH---------HcCCcEEEEeCCCChHHccc------------------------------
Confidence 9974 444556777665421 11234567777765543210
Q ss_pred hcCchhHhhccC--cEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHHH
Q 005511 566 QYFRPEFLNRLD--EMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRL 643 (693)
Q Consensus 566 ~~~~~~l~~R~~--~~v~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~ 643 (693)
..|+|.+|+. .++.+.+|+.+++.+|+++..... + +.+++++.++|++. ++.+ .|.+...++++
T Consensus 142 --~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~-------~--l~l~~~v~~~L~~~-~~~d--~r~l~~~l~~l 207 (229)
T PRK06893 142 --KLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQR-------G--IELSDEVANFLLKR-LDRD--MHTLFDALDLL 207 (229)
T ss_pred --cchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHc-------C--CCCCHHHHHHHHHh-ccCC--HHHHHHHHHHH
Confidence 3488999883 478999999999999997766421 3 56999999999985 4444 77777777754
No 299
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.46 E-value=2.6e-13 Score=125.68 Aligned_cols=151 Identities=26% Similarity=0.392 Sum_probs=92.1
Q ss_pred ChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCccee-eeccccc--cchhhhhh--h
Q 005511 380 GQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMI-RLDMSEF--MERHTVSK--L 454 (693)
Q Consensus 380 g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~-~~~~~~~--~~~~~~~~--l 454 (693)
||+.+++.|...+...+. .+.+||+||+|+||+++|+.+|+.+++....-. ...|... .......+ .
T Consensus 1 gq~~~~~~L~~~~~~~~l--------~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~ 72 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRL--------PHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFII 72 (162)
T ss_dssp S-HHHHHHHHHHHHCTC----------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEE
T ss_pred CcHHHHHHHHHHHHcCCc--------ceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEE
Confidence 788888888888865432 135899999999999999999999976443211 0011100 00000000 0
Q ss_pred cCCCCC--CcCcCccchhhHHHHc----CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCC
Q 005511 455 IGSPPG--YVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNV 528 (693)
Q Consensus 455 ~g~~~~--~~g~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~ 528 (693)
+..... ..+.++.+.+...+.. +...|++|||+|+++.+.+|+||+.||+ +..+++||++|+.
T Consensus 73 ~~~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEe-----------pp~~~~fiL~t~~ 141 (162)
T PF13177_consen 73 IKPDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEE-----------PPENTYFILITNN 141 (162)
T ss_dssp EETTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHS-----------TTTTEEEEEEES-
T ss_pred EecccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcC-----------CCCCEEEEEEECC
Confidence 111000 1222222333333222 3467999999999999999999999999 5678999999986
Q ss_pred ChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCC
Q 005511 529 GSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLT 586 (693)
Q Consensus 529 ~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~ 586 (693)
... +.|.+++|| ..+.|+|++
T Consensus 142 ~~~------------------------------------il~TI~SRc-~~i~~~~ls 162 (162)
T PF13177_consen 142 PSK------------------------------------ILPTIRSRC-QVIRFRPLS 162 (162)
T ss_dssp GGG------------------------------------S-HHHHTTS-EEEEE----
T ss_pred hHH------------------------------------ChHHHHhhc-eEEecCCCC
Confidence 654 779999999 999999875
No 300
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.46 E-value=2.6e-12 Score=134.81 Aligned_cols=186 Identities=23% Similarity=0.338 Sum_probs=124.3
Q ss_pred ccCCHHHHHHHHHHHhc-----------C-------CCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEe
Q 005511 44 VVGRQPQIERVVQILGR-----------R-------TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLD 105 (693)
Q Consensus 44 iiG~~~~~~~l~~~l~~-----------~-------~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 105 (693)
++||++.++.+...+.+ . ...++||+||||||||++|+++|+.+ +.++..++
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l----------~~pf~~~d 148 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL----------NVPFAIAD 148 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc----------CCCeEEec
Confidence 79999999988765521 1 13689999999999999999999887 56677777
Q ss_pred ccccccCCcccch-HHHHHHHHHHH----HHhCCCeEEEEeccchhhhCCCCC------ChHhHHHHHhhhhcC------
Q 005511 106 MGLLVAGTKYRGE-FEERLKKLMEE----IKQSDEIILFIDEVHTLIGAGAAE------GAIDAANILKPSLAR------ 168 (693)
Q Consensus 106 ~~~l~~~~~~~g~-~~~~l~~~~~~----~~~~~~~vL~iDEid~l~~~~~~~------~~~~~~~~L~~~l~~------ 168 (693)
+..+.. ..|.|. .+..+..++.. +....++||||||+|.+.+..... .+..+++.|+++++.
T Consensus 149 a~~L~~-~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~ 227 (413)
T TIGR00382 149 ATTLTE-AGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVP 227 (413)
T ss_pred hhhccc-cccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecc
Confidence 766542 235554 23344444332 234567799999999997642211 123578888888851
Q ss_pred ---------CCcEEEEEechH-------------------------------------HH------Hh--hhhcCHHHhc
Q 005511 169 ---------GELQCIGATTLD-------------------------------------EY------RK--HIEKDPALER 194 (693)
Q Consensus 169 ---------~~v~vI~~t~~~-------------------------------------~~------~~--~~~l~~~l~~ 194 (693)
...++|.|+|-. +. .. .+.+.|.|..
T Consensus 228 ~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg 307 (413)
T TIGR00382 228 PQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG 307 (413)
T ss_pred cCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC
Confidence 113455555430 00 00 1125689999
Q ss_pred cCC-ccccCCCCHHHHHHHHHH----HHHhHhh-----hcCcccChHHHHHHHHhh
Q 005511 195 RFQ-PVKVPEPSVDETIQILKG----LRERYEI-----HHKLRYTDEALVSAAQLS 240 (693)
Q Consensus 195 Rf~-~i~~~~p~~~e~~~il~~----~~~~~~~-----~~~~~~~~~~l~~l~~~~ 240 (693)
|++ .+.|.+++.+++.+|+.. +.+++.. .-.+.+++++++.+++.+
T Consensus 308 Rld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~ 363 (413)
T TIGR00382 308 RLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKA 363 (413)
T ss_pred CCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhC
Confidence 998 779999999999999986 3343321 234568899999999874
No 301
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.46 E-value=6.9e-13 Score=137.50 Aligned_cols=158 Identities=22% Similarity=0.318 Sum_probs=109.6
Q ss_pred hccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhh
Q 005511 375 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL 454 (693)
Q Consensus 375 ~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l 454 (693)
+.+++||+.+++.+...+...+. .+.+||+||+|+|||++|+.+|+.+.+....-...|+..+.
T Consensus 3 ~~~i~g~~~~~~~l~~~~~~~~~--------~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~-------- 66 (313)
T PRK05564 3 FHTIIGHENIKNRIKNSIIKNRF--------SHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFK-------- 66 (313)
T ss_pred hhhccCcHHHHHHHHHHHHcCCC--------CceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEec--------
Confidence 46789999999999888864321 23579999999999999999999985532110011111110
Q ss_pred cCCCCCCcCcCccchhhHHHHc----CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCCh
Q 005511 455 IGSPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGS 530 (693)
Q Consensus 455 ~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~ 530 (693)
.......+..+.+.+.+.+.. +...|++||++|+++...+|.||+.||+ +..+++||++|+...
T Consensus 67 -~~~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEe-----------pp~~t~~il~~~~~~ 134 (313)
T PRK05564 67 -PINKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEE-----------PPKGVFIILLCENLE 134 (313)
T ss_pred -cccCCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcC-----------CCCCeEEEEEeCChH
Confidence 000011121222233332222 3457999999999999999999999998 456788888876433
Q ss_pred hhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHH
Q 005511 531 SVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIM 597 (693)
Q Consensus 531 ~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~ 597 (693)
. +.|.+.+|| +++.|.+++.+++...+...
T Consensus 135 ~------------------------------------ll~TI~SRc-~~~~~~~~~~~~~~~~l~~~ 164 (313)
T PRK05564 135 Q------------------------------------ILDTIKSRC-QIYKLNRLSKEEIEKFISYK 164 (313)
T ss_pred h------------------------------------CcHHHHhhc-eeeeCCCcCHHHHHHHHHHH
Confidence 2 678999999 89999999999998887654
No 302
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=3.2e-13 Score=130.86 Aligned_cols=171 Identities=23% Similarity=0.330 Sum_probs=117.2
Q ss_pred CCccCCHHHHHHHHHHHhc--------------CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEecc
Q 005511 42 DPVVGRQPQIERVVQILGR--------------RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMG 107 (693)
Q Consensus 42 ~~iiG~~~~~~~l~~~l~~--------------~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 107 (693)
+.++.-.+.+++|...... ..-+-+||+||||||||+|++++|+.+.-... +......++++++.
T Consensus 142 EsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~-~~y~~~~liEinsh 220 (423)
T KOG0744|consen 142 ESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTN-DRYYKGQLIEINSH 220 (423)
T ss_pred HHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeec-CccccceEEEEehh
Confidence 3456666777776664321 11245689999999999999999999853211 11235678899988
Q ss_pred ccccCCcccchHHHHHHHHHHHHH---hCCC--eEEEEeccchhhhCCC----C---CChHhHHHHHhhhhc----CCCc
Q 005511 108 LLVAGTKYRGEFEERLKKLMEEIK---QSDE--IILFIDEVHTLIGAGA----A---EGAIDAANILKPSLA----RGEL 171 (693)
Q Consensus 108 ~l~~~~~~~g~~~~~l~~~~~~~~---~~~~--~vL~iDEid~l~~~~~----~---~~~~~~~~~L~~~l~----~~~v 171 (693)
.+. ++|-++.-+.+..+|+.+. ...+ ..++|||++.+...+. . ..+..+.|+++.-++ ...+
T Consensus 221 sLF--SKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nv 298 (423)
T KOG0744|consen 221 SLF--SKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNV 298 (423)
T ss_pred HHH--HHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCE
Confidence 887 5666666666666666553 2333 3456999999975431 1 223345566655544 4556
Q ss_pred EEEEEechHHHHhhhhcCHHHhccCC-ccccCCCCHHHHHHHHHHHHHhH
Q 005511 172 QCIGATTLDEYRKHIEKDPALERRFQ-PVKVPEPSVDETIQILKGLRERY 220 (693)
Q Consensus 172 ~vI~~t~~~~~~~~~~l~~~l~~Rf~-~i~~~~p~~~e~~~il~~~~~~~ 220 (693)
.+++++|-.+ .+|.++..|-+ +..+.+|+...+++|++..++.+
T Consensus 299 liL~TSNl~~-----siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL 343 (423)
T KOG0744|consen 299 LILATSNLTD-----SIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEEL 343 (423)
T ss_pred EEEeccchHH-----HHHHHhhhHhhheeecCCccHHHHHHHHHHHHHHH
Confidence 6666666665 78999999999 88999999999999999877653
No 303
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.46 E-value=1.3e-12 Score=135.48 Aligned_cols=174 Identities=16% Similarity=0.200 Sum_probs=123.4
Q ss_pred CCCCccCCHHHHHHHHHHHhcCCCCCe-EEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCcccch
Q 005511 40 KLDPVVGRQPQIERVVQILGRRTKNNP-CLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGE 118 (693)
Q Consensus 40 ~~~~iiG~~~~~~~l~~~l~~~~~~~v-Ll~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 118 (693)
+|++++|++.+++.+...+.....+|+ ||+||+|+|||++|+.+++.+.+...... ...+..+... .+. ..
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~--h~D~~~~~~~---~~~---~i 73 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQRE--YVDIIEFKPI---NKK---SI 73 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCC--CCCeEEeccc---cCC---CC
Confidence 588999999999999999988777766 79999999999999999999866432211 1223333221 111 11
Q ss_pred HHHHHHHHHHHHH----hCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCC--CcEEEEEechHHHHhhhhcCHHH
Q 005511 119 FEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG--ELQCIGATTLDEYRKHIEKDPAL 192 (693)
Q Consensus 119 ~~~~l~~~~~~~~----~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~--~v~vI~~t~~~~~~~~~~l~~~l 192 (693)
..+.++.+...+. .++..|++||++|.+. .+..+.|++.++.. .+.+|.+|+.++ .+.+++
T Consensus 74 ~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~--------~~a~naLLK~LEepp~~t~~il~~~~~~-----~ll~TI 140 (313)
T PRK05564 74 GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT--------EQAQNAFLKTIEEPPKGVFIILLCENLE-----QILDTI 140 (313)
T ss_pred CHHHHHHHHHHHhcCcccCCceEEEEechhhcC--------HHHHHHHHHHhcCCCCCeEEEEEeCChH-----hCcHHH
Confidence 1233555555442 3456799999999994 34788999999853 456666666655 688999
Q ss_pred hccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhh
Q 005511 193 ERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQ 242 (693)
Q Consensus 193 ~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 242 (693)
+||+..+.|++|+.++....++.... .++++.+..++..+.|
T Consensus 141 ~SRc~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~~~~l~~~~~g 182 (313)
T PRK05564 141 KSRCQIYKLNRLSKEEIEKFISYKYN--------DIKEEEKKSAIAFSDG 182 (313)
T ss_pred HhhceeeeCCCcCHHHHHHHHHHHhc--------CCCHHHHHHHHHHcCC
Confidence 99999999999999998777763321 3566667777766655
No 304
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.45 E-value=4.9e-13 Score=138.81 Aligned_cols=166 Identities=19% Similarity=0.250 Sum_probs=109.7
Q ss_pred hccccC-hHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCC----cceeeeccccccchh
Q 005511 375 HKRVIG-QDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE----EAMIRLDMSEFMERH 449 (693)
Q Consensus 375 ~~~v~g-~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~----~~~~~~~~~~~~~~~ 449 (693)
+..++| |+.+++.+...+...+ ..+.+||+||+|+||+++|+.+|+.+++.+ .++..+.........
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~~~~--------l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~ 75 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIAKNR--------LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSG 75 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCC--------CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcC
Confidence 455677 8889999988886543 224579999999999999999999986542 111111100000000
Q ss_pred hhhhh--cCCCCCCcCcCccchhhHHHH----cCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEE
Q 005511 450 TVSKL--IGSPPGYVGYTEGGQLTEAVR----RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLI 523 (693)
Q Consensus 450 ~~~~l--~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI 523 (693)
...++ +......++..+.+.+.+.+. .+...|++|||+|+++...+|.||+.||+ +..+++||
T Consensus 76 ~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEE-----------Pp~~~~~I 144 (329)
T PRK08058 76 NHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEE-----------PSGGTTAI 144 (329)
T ss_pred CCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcC-----------CCCCceEE
Confidence 00011 000000112122233333333 23457999999999999999999999998 56688899
Q ss_pred EecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHH
Q 005511 524 MTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADI 596 (693)
Q Consensus 524 ~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~ 596 (693)
++|+.... +.|++++|| ..+.|.+++.+++.+++..
T Consensus 145 l~t~~~~~------------------------------------ll~TIrSRc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 145 LLTENKHQ------------------------------------ILPTILSRC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred EEeCChHh------------------------------------CcHHHHhhc-eeeeCCCCCHHHHHHHHHH
Confidence 88874443 778999999 9999999999998877743
No 305
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.45 E-value=5.5e-12 Score=130.58 Aligned_cols=202 Identities=16% Similarity=0.233 Sum_probs=129.9
Q ss_pred CCCCc-cCCHHHHHH-HH-HHHhcC--CCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCc
Q 005511 40 KLDPV-VGRQPQIER-VV-QILGRR--TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTK 114 (693)
Q Consensus 40 ~~~~i-iG~~~~~~~-l~-~~l~~~--~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (693)
+|+++ +|..+.... +. .+...+ ..+.++||||+|.|||+|++++++...... .+..++++....+.. .
T Consensus 85 tFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~-----~~a~v~y~~se~f~~--~ 157 (408)
T COG0593 85 TFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANG-----PNARVVYLTSEDFTN--D 157 (408)
T ss_pred chhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhC-----CCceEEeccHHHHHH--H
Confidence 67876 444433332 22 233322 367899999999999999999999986643 256778777655431 0
Q ss_pred ccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCCcEEEEEechHHHHhhhhcCHHHhc
Q 005511 115 YRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYRKHIEKDPALER 194 (693)
Q Consensus 115 ~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~t~~~~~~~~~~l~~~l~~ 194 (693)
........-..-|..-.+.. +|+|||++.+. +......+....++.+.+.+. .+|.++..++.. .-.+.+.|.|
T Consensus 158 ~v~a~~~~~~~~Fk~~y~~d--lllIDDiq~l~--gk~~~qeefFh~FN~l~~~~k-qIvltsdr~P~~-l~~~~~rL~S 231 (408)
T COG0593 158 FVKALRDNEMEKFKEKYSLD--LLLIDDIQFLA--GKERTQEEFFHTFNALLENGK-QIVLTSDRPPKE-LNGLEDRLRS 231 (408)
T ss_pred HHHHHHhhhHHHHHHhhccC--eeeechHhHhc--CChhHHHHHHHHHHHHHhcCC-EEEEEcCCCchh-hccccHHHHH
Confidence 00000000001111111233 89999999884 334446678888899888887 555555443321 1136799999
Q ss_pred cCC---ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhhhhHHHHHhhHH
Q 005511 195 RFQ---PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRV 264 (693)
Q Consensus 195 Rf~---~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~a~~~~ 264 (693)
||. .+.+.+|+.+.|..||+...+ ..++.++++++..++....+.+ +.....+......+
T Consensus 232 R~~~Gl~~~I~~Pd~e~r~aiL~kka~----~~~~~i~~ev~~~la~~~~~nv------ReLegaL~~l~~~a 294 (408)
T COG0593 232 RLEWGLVVEIEPPDDETRLAILRKKAE----DRGIEIPDEVLEFLAKRLDRNV------RELEGALNRLDAFA 294 (408)
T ss_pred HHhceeEEeeCCCCHHHHHHHHHHHHH----hcCCCCCHHHHHHHHHHhhccH------HHHHHHHHHHHHHH
Confidence 995 789999999999999998665 4789999999999988765554 44444444444333
No 306
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.45 E-value=8.9e-13 Score=134.45 Aligned_cols=162 Identities=14% Similarity=0.247 Sum_probs=111.1
Q ss_pred cChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCC----cceeeeccccccchhhhhhh
Q 005511 379 IGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE----EAMIRLDMSEFMERHTVSKL 454 (693)
Q Consensus 379 ~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~----~~~~~~~~~~~~~~~~~~~l 454 (693)
.++....+.+.+.+...+. .+.+||+||+|+||+++|+.+|+.+.+.+ .++-.++...........++
T Consensus 5 PW~~~~~~~l~~~~~~~rl--------~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~ 76 (325)
T PRK06871 5 PWLQPTYQQITQAFQQGLG--------HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDF 76 (325)
T ss_pred cchHHHHHHHHHHHHcCCc--------ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 4667777777777765432 24689999999999999999999996533 22221110001111111111
Q ss_pred --cCC-CCCCcCcCccchhhHHHHc----CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecC
Q 005511 455 --IGS-PPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 527 (693)
Q Consensus 455 --~g~-~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn 527 (693)
+.+ ....++.++.+.+.+.+.. +...|++||++|+++...+|+||+.||+ +..+++||++|+
T Consensus 77 ~~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEE-----------Pp~~~~fiL~t~ 145 (325)
T PRK06871 77 HILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEE-----------PRPNTYFLLQAD 145 (325)
T ss_pred EEEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcC-----------CCCCeEEEEEEC
Confidence 111 0112343333555444443 3357999999999999999999999999 677899999987
Q ss_pred CChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHH
Q 005511 528 VGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADI 596 (693)
Q Consensus 528 ~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~ 596 (693)
.... +.|.+++|| +.+.|.|++.+++.+.+..
T Consensus 146 ~~~~------------------------------------llpTI~SRC-~~~~~~~~~~~~~~~~L~~ 177 (325)
T PRK06871 146 LSAA------------------------------------LLPTIYSRC-QTWLIHPPEEQQALDWLQA 177 (325)
T ss_pred ChHh------------------------------------CchHHHhhc-eEEeCCCCCHHHHHHHHHH
Confidence 6554 779999999 9999999999998877755
No 307
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.44 E-value=2.6e-12 Score=126.96 Aligned_cols=159 Identities=18% Similarity=0.229 Sum_probs=106.0
Q ss_pred EEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCCcCcCccchhhHHHHcCCCEEEEEccC
Q 005511 408 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEI 487 (693)
Q Consensus 408 ~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEi 487 (693)
+++|+||+|||||++++++++.+...+.....+.+..... + ...+.+.+... .+|+|||+
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~-------------~-----~~~~~~~~~~~--dlliiDdi 106 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW-------------F-----VPEVLEGMEQL--SLVCIDNI 106 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh-------------h-----hHHHHHHhhhC--CEEEEeCh
Confidence 6999999999999999999998754444444444433211 0 01122223322 48999999
Q ss_pred cccC--HHHH----HHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHH
Q 005511 488 EKAH--PDVF----NMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVT 561 (693)
Q Consensus 488 d~l~--~~~~----~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~ 561 (693)
+.+. +..+ +.+...+++| +..+|+||+.++..+.
T Consensus 107 ~~~~~~~~~~~~lf~l~n~~~e~g-------------~~~li~ts~~~p~~l~--------------------------- 146 (235)
T PRK08084 107 ECIAGDELWEMAIFDLYNRILESG-------------RTRLLITGDRPPRQLN--------------------------- 146 (235)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHcC-------------CCeEEEeCCCChHHcC---------------------------
Confidence 9985 3333 3444444443 2347777775554221
Q ss_pred HHHhhcCchhHhhccC--cEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHH
Q 005511 562 EELKQYFRPEFLNRLD--EMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRA 639 (693)
Q Consensus 562 ~~l~~~~~~~l~~R~~--~~v~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~ 639 (693)
.+.|+|.+|+. .++.+.|++.+++.+++++.... ++ +.++++++++|++. ++.+ +|.+...
T Consensus 147 -----~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~-------~~--~~l~~~v~~~L~~~-~~~d--~r~l~~~ 209 (235)
T PRK08084 147 -----LGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARL-------RG--FELPEDVGRFLLKR-LDRE--MRTLFMT 209 (235)
T ss_pred -----cccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHh-hcCC--HHHHHHH
Confidence 14699999995 58999999999999998654432 13 56999999999985 5444 7778888
Q ss_pred HHHH
Q 005511 640 IMRL 643 (693)
Q Consensus 640 i~~~ 643 (693)
++.+
T Consensus 210 l~~l 213 (235)
T PRK08084 210 LDQL 213 (235)
T ss_pred HHHH
Confidence 8764
No 308
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.44 E-value=6.6e-12 Score=123.58 Aligned_cols=117 Identities=22% Similarity=0.202 Sum_probs=91.1
Q ss_pred CeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCC-CcEEEEEechHH-------HHhhhhcCHHHhccCCccccCCCCH
Q 005511 135 EIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG-ELQCIGATTLDE-------YRKHIEKDPALERRFQPVKVPEPSV 206 (693)
Q Consensus 135 ~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~-~v~vI~~t~~~~-------~~~~~~l~~~l~~Rf~~i~~~~p~~ 206 (693)
|.||||||+|.| +.+...+|++.+++. ..++|.+||+-- +..-..++..|+.|+-.|.-.+++.
T Consensus 292 pGVLFIDEvHmL--------DIE~FsFlnrAlEse~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~ 363 (450)
T COG1224 292 PGVLFIDEVHML--------DIECFSFLNRALESELAPIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSR 363 (450)
T ss_pred cceEEEechhhh--------hHHHHHHHHHHhhcccCcEEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEecCCCCH
Confidence 789999999999 566889999999854 356777777421 1112257889999999999999999
Q ss_pred HHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhhhhHHHHHhhHHHHhh
Q 005511 207 DETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRH 268 (693)
Q Consensus 207 ~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~a~~~~~~~~ 268 (693)
++..+|++..+. ..++.+++++++.++.+.... .-+.++.+|.-|...+..+.
T Consensus 364 ~EireIi~iRa~----ee~i~l~~~Ale~L~~ig~et-----SLRYa~qLL~pa~iiA~~rg 416 (450)
T COG1224 364 EEIREIIRIRAK----EEDIELSDDALEYLTDIGEET-----SLRYAVQLLTPASIIAKRRG 416 (450)
T ss_pred HHHHHHHHHhhh----hhccccCHHHHHHHHhhchhh-----hHHHHHHhccHHHHHHHHhC
Confidence 999999998776 478899999999999875443 33778888887777766554
No 309
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.44 E-value=2.9e-12 Score=128.55 Aligned_cols=109 Identities=27% Similarity=0.224 Sum_probs=74.1
Q ss_pred CeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCC-CcEEEEEechHH-------HHhhhhcCHHHhccCCccccCCCCH
Q 005511 135 EIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG-ELQCIGATTLDE-------YRKHIEKDPALERRFQPVKVPEPSV 206 (693)
Q Consensus 135 ~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~-~v~vI~~t~~~~-------~~~~~~l~~~l~~Rf~~i~~~~p~~ 206 (693)
|+||||||+|.| +.+....|.+.+|.. ..++|.+||+.- +.....++..|+.|+-.|...+++.
T Consensus 279 pGVLFIDEvHmL--------DiEcFsfLnralEs~~sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t~py~~ 350 (398)
T PF06068_consen 279 PGVLFIDEVHML--------DIECFSFLNRALESELSPIIILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSE 350 (398)
T ss_dssp E-EEEEESGGGS--------BHHHHHHHHHHHTSTT--EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE----H
T ss_pred cceEEecchhhc--------cHHHHHHHHHHhcCCCCcEEEEecCceeeeccCccCcCCCCCCcchHhhcEEEECCCCCH
Confidence 789999999999 566899999999864 467788888421 1112256789999999999999999
Q ss_pred HHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhhhhHHHHH
Q 005511 207 DETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEA 260 (693)
Q Consensus 207 ~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~a 260 (693)
++..+|++..++ ..++.+++++++.+..++.... -+.|+.++..|
T Consensus 351 ~ei~~Il~iR~~----~E~v~i~~~al~~L~~ig~~~S-----LRYAiqLi~~a 395 (398)
T PF06068_consen 351 EEIKQILKIRAK----EEDVEISEDALDLLTKIGVETS-----LRYAIQLITPA 395 (398)
T ss_dssp HHHHHHHHHHHH----HCT--B-HHHHHHHHHHHHHS------HHHHHHCHHHH
T ss_pred HHHHHHHHhhhh----hhcCcCCHHHHHHHHHHhhhcc-----HHHHHHhhhhh
Confidence 999999998887 4889999999999988765542 25566665543
No 310
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.43 E-value=3.6e-12 Score=131.06 Aligned_cols=164 Identities=20% Similarity=0.271 Sum_probs=101.1
Q ss_pred CCCccCCHHHHHHHHHHHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCC----CCCC-CCCceE-EEEecc-------
Q 005511 41 LDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGD----VPDT-IEGKKV-ITLDMG------- 107 (693)
Q Consensus 41 ~~~iiG~~~~~~~l~~~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~----~~~~-~~~~~~-~~~~~~------- 107 (693)
|..++||++.+..|.-.+-.+...+++|.|+||+||||++++++..+.... .|.. ....+. +..+|.
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 82 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQE 82 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhccc
Confidence 778999999999987776666778999999999999999999998874210 0000 000000 000000
Q ss_pred ------------ccccC---CcccchH--HHHHHH---HH--HHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhh
Q 005511 108 ------------LLVAG---TKYRGEF--EERLKK---LM--EEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPS 165 (693)
Q Consensus 108 ------------~l~~~---~~~~g~~--~~~l~~---~~--~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~ 165 (693)
++-.+ ....|.. ...+.. .+ +.+.+..+.+||+||++.+.+ ..++.|...
T Consensus 83 ~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~--------~~Q~~Ll~~ 154 (337)
T TIGR02030 83 PLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLED--------HLVDVLLDV 154 (337)
T ss_pred ccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCH--------HHHHHHHHH
Confidence 00000 0111111 111100 00 111234456999999999843 377778777
Q ss_pred hcCCC---------------cEEEEEechHHHHhhhhcCHHHhccCC-ccccCCCCH-HHHHHHHHHH
Q 005511 166 LARGE---------------LQCIGATTLDEYRKHIEKDPALERRFQ-PVKVPEPSV-DETIQILKGL 216 (693)
Q Consensus 166 l~~~~---------------v~vI~~t~~~~~~~~~~l~~~l~~Rf~-~i~~~~p~~-~e~~~il~~~ 216 (693)
++.+. +++|+++|+.+. .+.+++..||. .+.++.|+. +++.+|++..
T Consensus 155 l~~g~~~v~r~G~~~~~~~r~iviat~np~eg----~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~ 218 (337)
T TIGR02030 155 AASGWNVVEREGISIRHPARFVLVGSGNPEEG----ELRPQLLDRFGLHAEIRTVRDVELRVEIVERR 218 (337)
T ss_pred HHhCCeEEEECCEEEEcCCCEEEEeccccccC----CCCHHHHhhcceEEECCCCCCHHHHHHHHHhh
Confidence 75442 566777765532 47999999998 788988876 8888888763
No 311
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.43 E-value=2.9e-12 Score=122.63 Aligned_cols=155 Identities=21% Similarity=0.275 Sum_probs=101.2
Q ss_pred eEEEEeccCCCcHHHHHHHHHHHhcCC----Ccceeee-ccccccchhhhhh--hcCCCCCCcCcCccchhhHHHHc---
Q 005511 407 ASFIFSGPTGVGKSELAKALAAYYFGS----EEAMIRL-DMSEFMERHTVSK--LIGSPPGYVGYTEGGQLTEAVRR--- 476 (693)
Q Consensus 407 ~~iLl~Gp~GtGKt~lA~~la~~l~~~----~~~~~~~-~~~~~~~~~~~~~--l~g~~~~~~g~~~~~~l~~~~~~--- 476 (693)
+.+||+||+|+|||++|+.+++.+.+. +.++... +|..+... ...+ .+....+..+....+.+.+.+..
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~-~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 93 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAG-NHPDLHRLEPEGQSIKVDQVRELVEFLSRTPQ 93 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC-CCCcEEEeccccCcCCHHHHHHHHHHHccCcc
Confidence 469999999999999999999998653 1111100 00000000 0000 00010111222222333444443
Q ss_pred -CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHH
Q 005511 477 -RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNR 555 (693)
Q Consensus 477 -~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~ 555 (693)
+...|++|||+|++++..++.|+..||+ +..+++||+++|....
T Consensus 94 ~~~~kviiide~~~l~~~~~~~Ll~~le~-----------~~~~~~~il~~~~~~~------------------------ 138 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAAANALLKTLEE-----------PPPNTLFILITPSPEK------------------------ 138 (188)
T ss_pred cCCeEEEEEechhhhCHHHHHHHHHHhcC-----------CCCCeEEEEEECChHh------------------------
Confidence 3457999999999999999999999988 3456778888763322
Q ss_pred HHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHh
Q 005511 556 IKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEE 625 (693)
Q Consensus 556 l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~ 625 (693)
+.+++.+|+ ..+.|.|++.+++.+++... | +++++.++++..
T Consensus 139 ------------l~~~i~sr~-~~~~~~~~~~~~~~~~l~~~-----------g----i~~~~~~~i~~~ 180 (188)
T TIGR00678 139 ------------LLPTIRSRC-QVLPFPPLSEEALLQWLIRQ-----------G----ISEEAAELLLAL 180 (188)
T ss_pred ------------ChHHHHhhc-EEeeCCCCCHHHHHHHHHHc-----------C----CCHHHHHHHHHH
Confidence 678999999 79999999999998888553 2 678888888874
No 312
>PRK09087 hypothetical protein; Validated
Probab=99.43 E-value=1e-11 Score=121.39 Aligned_cols=164 Identities=12% Similarity=0.068 Sum_probs=112.2
Q ss_pred CCCCccC-C-H-HHHHHHHHHHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCccc
Q 005511 40 KLDPVVG-R-Q-PQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYR 116 (693)
Q Consensus 40 ~~~~iiG-~-~-~~~~~l~~~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 116 (693)
+|++++. . + ..+..+.++. ....+.++|+||+|+|||||++++++.. +.. +++...+.
T Consensus 19 ~~~~Fi~~~~N~~a~~~l~~~~-~~~~~~l~l~G~~GsGKThLl~~~~~~~----------~~~--~i~~~~~~------ 79 (226)
T PRK09087 19 GRDDLLVTESNRAAVSLVDHWP-NWPSPVVVLAGPVGSGKTHLASIWREKS----------DAL--LIHPNEIG------ 79 (226)
T ss_pred ChhceeecCchHHHHHHHHhcc-cCCCCeEEEECCCCCCHHHHHHHHHHhc----------CCE--EecHHHcc------
Confidence 6888874 3 3 3334333333 2233448999999999999999998764 322 34332211
Q ss_pred chHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCCcEEEEEechHHHHhhhhc-CHHHhcc
Q 005511 117 GEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYRKHIEK-DPALERR 195 (693)
Q Consensus 117 g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~t~~~~~~~~~~l-~~~l~~R 195 (693)
...+..+.. .+|+|||++.+.. ........++...+.+..++++++.++.. +.. .+.+++|
T Consensus 80 -------~~~~~~~~~---~~l~iDDi~~~~~-----~~~~lf~l~n~~~~~g~~ilits~~~p~~---~~~~~~dL~SR 141 (226)
T PRK09087 80 -------SDAANAAAE---GPVLIEDIDAGGF-----DETGLFHLINSVRQAGTSLLMTSRLWPSS---WNVKLPDLKSR 141 (226)
T ss_pred -------hHHHHhhhc---CeEEEECCCCCCC-----CHHHHHHHHHHHHhCCCeEEEECCCChHH---hccccccHHHH
Confidence 112222222 2799999997621 13456777777777777666666655542 233 7899999
Q ss_pred C---CccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhh
Q 005511 196 F---QPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYI 244 (693)
Q Consensus 196 f---~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 244 (693)
| ..+++++|+.+++.++++..++. .++.+++++++.+++.+.+.+
T Consensus 142 l~~gl~~~l~~pd~e~~~~iL~~~~~~----~~~~l~~ev~~~La~~~~r~~ 189 (226)
T PRK09087 142 LKAATVVEIGEPDDALLSQVIFKLFAD----RQLYVDPHVVYYLVSRMERSL 189 (226)
T ss_pred HhCCceeecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhhhhH
Confidence 9 48999999999999999988875 578899999999999887654
No 313
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.43 E-value=2.1e-12 Score=143.78 Aligned_cols=116 Identities=19% Similarity=0.237 Sum_probs=80.7
Q ss_pred HHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCC----------eeecCCeEEEEecCCChhhhhhcccccc
Q 005511 472 EAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGR----------TVDFKNTLLIMTSNVGSSVIEKGGRRIG 541 (693)
Q Consensus 472 ~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~----------~~~~~~~~iI~~tn~~~~~i~~~~~~~~ 541 (693)
+.+.++.+|+|||||++.+++..|..|++.|+++++...++. .....++++|+++|...
T Consensus 211 G~L~~AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~----------- 279 (608)
T TIGR00764 211 GAIHRAHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDD----------- 279 (608)
T ss_pred CceEECCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHH-----------
Confidence 455678889999999999999999999999999987764431 11133889999998321
Q ss_pred cccCcCcccchHHHHHHHHHHHHhhcCchhHhhccC---cEEEcCC---CCHHHHHHHHHHHHHHHHHHHhcCCCeEEeC
Q 005511 542 FDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLD---EMIVFRQ---LTKLEVKEIADIMLKEVFDRLKTKDIELQVT 615 (693)
Q Consensus 542 f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~---~~v~f~~---l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~ 615 (693)
...++|+|++||+ ..+.|++ .+.+...++++...++. ...|...+++
T Consensus 280 -----------------------l~~l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~----~r~G~l~~~s 332 (608)
T TIGR00764 280 -----------------------LEGMHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEV----KKDGRIPHFT 332 (608)
T ss_pred -----------------------HhhcCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHH----HHhCCCCcCC
Confidence 0118899999998 5566654 36666666544333222 2223334799
Q ss_pred HHHHHHHHHh
Q 005511 616 ERFRERVVEE 625 (693)
Q Consensus 616 ~~~~~~l~~~ 625 (693)
++++..|.++
T Consensus 333 ~~Av~~Li~~ 342 (608)
T TIGR00764 333 RDAVEEIVRE 342 (608)
T ss_pred HHHHHHHHHH
Confidence 9999888864
No 314
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.42 E-value=1.6e-12 Score=144.58 Aligned_cols=205 Identities=18% Similarity=0.181 Sum_probs=131.5
Q ss_pred ceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCC----cCcCccchhhHHHHcCCCEE
Q 005511 406 IASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGY----VGYTEGGQLTEAVRRRPYTV 481 (693)
Q Consensus 406 ~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~----~g~~~~~~l~~~~~~~~~~v 481 (693)
.+++||.|+||||||++|++++..+.. ..+|+.+.++. ....|+|...-+ .|... .-.+.+.++.+++
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~-~~pfv~i~~~~-----t~d~L~G~idl~~~~~~g~~~--~~~G~L~~A~~Gv 87 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPP-IMPFVELPLGV-----TEDRLIGGIDVEESLAGGQRV--TQPGLLDEAPRGV 87 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCc-CCCeEecCccc-----chhhcccchhhhhhhhcCccc--CCCCCeeeCCCCc
Confidence 568999999999999999999998733 34688877531 123455542100 01000 0012334567899
Q ss_pred EEEccCcccCHHHHHHHHHHhhcceeeCCC-CCeee-cCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHH
Q 005511 482 VLFDEIEKAHPDVFNMMLQILEDGRLTDSK-GRTVD-FKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSL 559 (693)
Q Consensus 482 l~iDEid~l~~~~~~~Ll~~le~~~~~~~~-~~~~~-~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~ 559 (693)
||+||++++++.+|+.|+..|++|.++... |.... ..++++|+|+|....
T Consensus 88 L~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~---------------------------- 139 (589)
T TIGR02031 88 LYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEG---------------------------- 139 (589)
T ss_pred EeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccc----------------------------
Confidence 999999999999999999999999865432 33333 347889988885420
Q ss_pred HHHHHhhcCchhHhhccCcEEEcCCC-CHHHHHHHHHHHHHHHH--------------HHHhcCCCeEEeCHHHHHHHHH
Q 005511 560 VTEELKQYFRPEFLNRLDEMIVFRQL-TKLEVKEIADIMLKEVF--------------DRLKTKDIELQVTERFRERVVE 624 (693)
Q Consensus 560 ~~~~l~~~~~~~l~~R~~~~v~f~~l-~~~~~~~i~~~~l~~~~--------------~~~~~~~~~l~~~~~~~~~l~~ 624 (693)
.+.|+++|++||+.++....+ +.++..+|+++.+..+. ...+..-..+.++++++++|++
T Consensus 140 -----~g~L~~~LldRf~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~ 214 (589)
T TIGR02031 140 -----GGGLPDHLLDRLALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVL 214 (589)
T ss_pred -----cCCCCHHHHHhccCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHH
Confidence 012889999999887777654 55666778776653221 1112223346789999999988
Q ss_pred hccCCCCCcchHHHHHHHHHHHHHHHHHHh
Q 005511 625 EGYNPSYGARPLRRAIMRLLEDSMAEKMLA 654 (693)
Q Consensus 625 ~~~~~~~g~r~l~~~i~~~i~~~l~~~~l~ 654 (693)
.... +|+..++..+. ++..+-+.+.+.
T Consensus 215 ~~~~--~gv~s~Ra~i~-~~r~ArA~Aal~ 241 (589)
T TIGR02031 215 TAAS--LGISGHRADLF-AVRAAKAHAALH 241 (589)
T ss_pred HHHH--cCCCCccHHHH-HHHHHHHHHHHh
Confidence 6443 34444555444 444444444443
No 315
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.42 E-value=2.8e-12 Score=149.44 Aligned_cols=212 Identities=21% Similarity=0.238 Sum_probs=147.4
Q ss_pred CCcccccccccCCCCCCCCCccHHHHHhhhhhhhhcCCCCCccCCHHHHHHHHHHHhcC---------CCCCeEEECCCC
Q 005511 3 GESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRR---------TKNNPCLIGEPG 73 (693)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~---------~~~~vLl~Gp~G 73 (693)
.+++++|+.+|......+....|......|.+ .++||+..++.+...+... +...+||+||+|
T Consensus 534 ~~v~~~~tgip~~~~~~~e~~~l~~l~~~l~~--------~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G 605 (852)
T TIGR03346 534 AEVVSRWTGIPVSKMLEGEREKLLHMEEVLHE--------RVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTG 605 (852)
T ss_pred HHHHHHhcCCCcccccHHHHHHHHHHHHHhhc--------ccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCC
Confidence 34566777788777777766666666555544 4999999999988887642 124588999999
Q ss_pred ChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCC----------cccchHHHHHHHHHHHHHhCCCeEEEEecc
Q 005511 74 VGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGT----------KYRGEFEERLKKLMEEIKQSDEIILFIDEV 143 (693)
Q Consensus 74 tGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~----------~~~g~~~~~l~~~~~~~~~~~~~vL~iDEi 143 (693)
||||++|+++++.+.. .+.+++.++++.+.... .+.|-.+ -..+...++..+.+||++||+
T Consensus 606 vGKt~lA~~La~~l~~-------~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~--~g~l~~~v~~~p~~vlllDei 676 (852)
T TIGR03346 606 VGKTELAKALAEFLFD-------DEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEE--GGQLTEAVRRKPYSVVLFDEV 676 (852)
T ss_pred CCHHHHHHHHHHHhcC-------CCCcEEEEechhhcccchHHHhcCCCCCccCccc--ccHHHHHHHcCCCcEEEEecc
Confidence 9999999999998854 24578888876653211 1111111 122334455666789999999
Q ss_pred chhhhCCCCCChHhHHHHHhhhhcCCC-------------cEEEEEechHHH--Hh------------------hhhcCH
Q 005511 144 HTLIGAGAAEGAIDAANILKPSLARGE-------------LQCIGATTLDEY--RK------------------HIEKDP 190 (693)
Q Consensus 144 d~l~~~~~~~~~~~~~~~L~~~l~~~~-------------v~vI~~t~~~~~--~~------------------~~~l~~ 190 (693)
+.+. .++++.|.++++.+. .+||+|||...- .. .-...|
T Consensus 677 eka~--------~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~p 748 (852)
T TIGR03346 677 EKAH--------PDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRP 748 (852)
T ss_pred ccCC--------HHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCH
Confidence 9984 448899999886542 458888886211 00 001468
Q ss_pred HHhccCC-ccccCCCCHHHHHHHHHHHHHhHh---hhc--CcccChHHHHHHHHh
Q 005511 191 ALERRFQ-PVKVPEPSVDETIQILKGLRERYE---IHH--KLRYTDEALVSAAQL 239 (693)
Q Consensus 191 ~l~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~---~~~--~~~~~~~~l~~l~~~ 239 (693)
.|..|++ .+.|.+++.++..+|+...+..+. ... .+.+++++++.+++.
T Consensus 749 el~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~ 803 (852)
T TIGR03346 749 EFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEA 803 (852)
T ss_pred HHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHh
Confidence 8889997 889999999999999997765432 122 367899999988875
No 316
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.42 E-value=1.9e-12 Score=143.18 Aligned_cols=119 Identities=13% Similarity=0.205 Sum_probs=81.1
Q ss_pred HHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCC----------eeecCCeEEEEecCCChhhhhhcccccc
Q 005511 472 EAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGR----------TVDFKNTLLIMTSNVGSSVIEKGGRRIG 541 (693)
Q Consensus 472 ~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~----------~~~~~~~~iI~~tn~~~~~i~~~~~~~~ 541 (693)
+.+.++.+|+|||||++.+++..|..|++.|+++++...++. .....++.+|+++|....
T Consensus 220 G~L~kAnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll---------- 289 (637)
T PRK13765 220 GAIHKAHKGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDAL---------- 289 (637)
T ss_pred CceeECCCcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHH----------
Confidence 455678899999999999999999999999999987653321 112238899999985311
Q ss_pred cccCcCcccchHHHHHHHHHHHHhhcCchhHhhccC---cEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCHHH
Q 005511 542 FDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLD---EMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERF 618 (693)
Q Consensus 542 f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~---~~v~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~ 618 (693)
..++|+|.+||. ..+.|.+-.. +..+....++..+.+.....|...++++++
T Consensus 290 ------------------------~~~dpdL~~rfk~~~v~v~f~~~~~-d~~e~~~~~~~~iaqe~~~~G~l~~f~~eA 344 (637)
T PRK13765 290 ------------------------ENMHPALRSRIKGYGYEVYMRDTME-DTPENRRKLVRFVAQEVKRDGKIPHFDRDA 344 (637)
T ss_pred ------------------------HhhhHHHHHHhccCeEEEEcccccC-CCHHHHHHHHHHHHHHhhhccCCCCCCHHH
Confidence 115799999985 3466664322 334444455554444444433344799999
Q ss_pred HHHHHHh
Q 005511 619 RERVVEE 625 (693)
Q Consensus 619 ~~~l~~~ 625 (693)
+..|.++
T Consensus 345 Va~LI~~ 351 (637)
T PRK13765 345 VEEIIRE 351 (637)
T ss_pred HHHHHHH
Confidence 9988876
No 317
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.42 E-value=1.3e-12 Score=133.15 Aligned_cols=163 Identities=18% Similarity=0.197 Sum_probs=109.0
Q ss_pred ccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCc-ceeeeccccccchhhhhhh--
Q 005511 378 VIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE-AMIRLDMSEFMERHTVSKL-- 454 (693)
Q Consensus 378 v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~-~~~~~~~~~~~~~~~~~~l-- 454 (693)
..++..+.+.+...+...+. .+.+||+||+|+||+++|.++|+.+.+.+. +.-...+.......+.-++
T Consensus 6 yPW~~~~~~~l~~~~~~~rl--------~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~ 77 (319)
T PRK08769 6 SPWQQRAYDQTVAALDAGRL--------GHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQL 77 (319)
T ss_pred cccHHHHHHHHHHHHHcCCc--------ceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEE
Confidence 45777888888877765432 235999999999999999999999966431 1111111111111111111
Q ss_pred cCCCCCC--------cCcCccchhhHHHHc----CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEE
Q 005511 455 IGSPPGY--------VGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLL 522 (693)
Q Consensus 455 ~g~~~~~--------~g~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i 522 (693)
+...+.. ++.+..+.+.+.+.. +...|++||++|+++...+|+||+.||+ +..+++|
T Consensus 78 i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE-----------Pp~~~~f 146 (319)
T PRK08769 78 VSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEE-----------PSPGRYL 146 (319)
T ss_pred EecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhC-----------CCCCCeE
Confidence 1000111 112222333333333 2357999999999999999999999999 5678889
Q ss_pred EEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHH
Q 005511 523 IMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADI 596 (693)
Q Consensus 523 I~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~ 596 (693)
|++|+.... +.|.+++|| ..+.|.+++.++..+.+..
T Consensus 147 iL~~~~~~~------------------------------------lLpTIrSRC-q~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 147 WLISAQPAR------------------------------------LPATIRSRC-QRLEFKLPPAHEALAWLLA 183 (319)
T ss_pred EEEECChhh------------------------------------CchHHHhhh-eEeeCCCcCHHHHHHHHHH
Confidence 999886554 679999999 9999999999998877753
No 318
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.42 E-value=6e-12 Score=128.94 Aligned_cols=193 Identities=18% Similarity=0.200 Sum_probs=130.1
Q ss_pred CCCCccCCHHHHHHHHHHHhcCC-CCCeEEECCCCChHHHHHHHHHHHHhcCCCC--------CCCCCceEEEEeccccc
Q 005511 40 KLDPVVGRQPQIERVVQILGRRT-KNNPCLIGEPGVGKTAIAEGLAQRIASGDVP--------DTIEGKKVITLDMGLLV 110 (693)
Q Consensus 40 ~~~~iiG~~~~~~~l~~~l~~~~-~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~--------~~~~~~~~~~~~~~~l~ 110 (693)
.|++++|++.+++.+...+.... ++..||+||+|+||+++|.++|+.+.+.... .......++.+.+....
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~ 81 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence 47899999999999999998766 4677899999999999999999998764311 01122334444432111
Q ss_pred cCCcc---------------cchHHHHHHHHHHHHH----hCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC-CC
Q 005511 111 AGTKY---------------RGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR-GE 170 (693)
Q Consensus 111 ~~~~~---------------~g~~~~~l~~~~~~~~----~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~-~~ 170 (693)
.+... ..-..+.++.+...+. .+...|++||++|.|.. ...+.|++.+|. ..
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~--------~aaNaLLK~LEEPp~ 153 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE--------AAANALLKTLEEPGN 153 (314)
T ss_pred cccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH--------HHHHHHHHHHhCCCC
Confidence 11100 0011234555555553 24567999999999953 478889988873 34
Q ss_pred cEEEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCc
Q 005511 171 LQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLP 250 (693)
Q Consensus 171 v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 250 (693)
..+|.+|+.++ .+-|+++||+..+.|++++.++..++|+..... .. .+.....++.++.|. |
T Consensus 154 ~~fILi~~~~~-----~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~----~~---~~~~~~~l~~~a~Gs------~ 215 (314)
T PRK07399 154 GTLILIAPSPE-----SLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDE----EI---LNINFPELLALAQGS------P 215 (314)
T ss_pred CeEEEEECChH-----hCcHHHHhhceEEecCCCCHHHHHHHHHHhhcc----cc---chhHHHHHHHHcCCC------H
Confidence 56777777776 689999999999999999999999988854321 11 111234566666554 4
Q ss_pred hhhhhHHH
Q 005511 251 DKAIDLID 258 (693)
Q Consensus 251 ~~~~~ll~ 258 (693)
+.++.++.
T Consensus 216 ~~al~~l~ 223 (314)
T PRK07399 216 GAAIANIE 223 (314)
T ss_pred HHHHHHHH
Confidence 66666554
No 319
>PRK06620 hypothetical protein; Validated
Probab=99.41 E-value=3.6e-12 Score=123.54 Aligned_cols=169 Identities=8% Similarity=0.065 Sum_probs=114.4
Q ss_pred CCCCc-cCC--HHHHHHHHHHHhcCC--C--CCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccC
Q 005511 40 KLDPV-VGR--QPQIERVVQILGRRT--K--NNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAG 112 (693)
Q Consensus 40 ~~~~i-iG~--~~~~~~l~~~l~~~~--~--~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (693)
+|+++ +|. +.....+.++..... + ++++||||||||||+|++++++.. +. +.+.....
T Consensus 14 tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~----------~~--~~~~~~~~--- 78 (214)
T PRK06620 14 HPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLS----------NA--YIIKDIFF--- 78 (214)
T ss_pred CchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhcc----------CC--EEcchhhh---
Confidence 57776 444 234444555543221 2 568999999999999999988765 22 11110000
Q ss_pred CcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCCcEEEEEechHHHHhhhhcCHHH
Q 005511 113 TKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYRKHIEKDPAL 192 (693)
Q Consensus 113 ~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~t~~~~~~~~~~l~~~l 192 (693)
.... .... .+|+|||+|.+. .......++.+.+.+..++++++.++.. +.+ +++
T Consensus 79 ----------~~~~---~~~~--d~lliDdi~~~~-------~~~lf~l~N~~~e~g~~ilits~~~p~~---l~l-~~L 132 (214)
T PRK06620 79 ----------NEEI---LEKY--NAFIIEDIENWQ-------EPALLHIFNIINEKQKYLLLTSSDKSRN---FTL-PDL 132 (214)
T ss_pred ----------chhH---HhcC--CEEEEeccccch-------HHHHHHHHHHHHhcCCEEEEEcCCCccc---cch-HHH
Confidence 0011 1122 389999999551 2346677777778888777777766652 356 899
Q ss_pred hccCC---ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhhhhHHHH
Q 005511 193 ERRFQ---PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDE 259 (693)
Q Consensus 193 ~~Rf~---~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~ 259 (693)
++|+. ++.+++|+.+++..+++..... .++.+++++++.++....+.+ +.+..+++.
T Consensus 133 ~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~----~~l~l~~ev~~~L~~~~~~d~------r~l~~~l~~ 192 (214)
T PRK06620 133 SSRIKSVLSILLNSPDDELIKILIFKHFSI----SSVTISRQIIDFLLVNLPREY------SKIIEILEN 192 (214)
T ss_pred HHHHhCCceEeeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHccCCH------HHHHHHHHH
Confidence 99997 7999999999999999877663 568899999999999887764 455555554
No 320
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.41 E-value=5.5e-13 Score=120.54 Aligned_cols=137 Identities=23% Similarity=0.399 Sum_probs=97.8
Q ss_pred cChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCC
Q 005511 379 IGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSP 458 (693)
Q Consensus 379 ~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 458 (693)
+|.+.+++.+.+.+...... . .+++|+|++||||+++|++|+........+|+.++|....
T Consensus 1 vG~S~~~~~l~~~l~~~a~~-~------~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~------------ 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKS-S------SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP------------ 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCS-S------S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC------------
T ss_pred CCCCHHHHHHHHHHHHHhCC-C------CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc------------
Confidence 57888899999998877522 1 2499999999999999999999876666788888876532
Q ss_pred CCCcCcCccchhhHHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhccc
Q 005511 459 PGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGR 538 (693)
Q Consensus 459 ~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~ 538 (693)
.+.+.++.+++|||+|+|.+++..|..|+..++... ..++++|+++......+..
T Consensus 62 ------------~~~l~~a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~----------~~~~RlI~ss~~~l~~l~~--- 116 (138)
T PF14532_consen 62 ------------AELLEQAKGGTLYLKNIDRLSPEAQRRLLDLLKRQE----------RSNVRLIASSSQDLEELVE--- 116 (138)
T ss_dssp ------------HHHHHHCTTSEEEEECGCCS-HHHHHHHHHHHHHCT----------TTTSEEEEEECC-CCCHHH---
T ss_pred ------------HHHHHHcCCCEEEECChHHCCHHHHHHHHHHHHhcC----------CCCeEEEEEeCCCHHHHhh---
Confidence 234455678999999999999999999999998631 3467899998754432111
Q ss_pred ccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcE-EEcCCC
Q 005511 539 RIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEM-IVFRQL 585 (693)
Q Consensus 539 ~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~-v~f~~l 585 (693)
...|.++|+.|++.. +.+|||
T Consensus 117 --------------------------~~~~~~~L~~~l~~~~i~lPpL 138 (138)
T PF14532_consen 117 --------------------------EGRFSPDLYYRLSQLEIHLPPL 138 (138)
T ss_dssp --------------------------HSTHHHHHHHHCSTCEEEE---
T ss_pred --------------------------ccchhHHHHHHhCCCEEeCCCC
Confidence 122789999999764 777765
No 321
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.41 E-value=1.3e-11 Score=117.97 Aligned_cols=168 Identities=23% Similarity=0.347 Sum_probs=120.7
Q ss_pred hcCCCCCccCCHHHHHHHHH----HHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccC
Q 005511 37 EEGKLDPVVGRQPQIERVVQ----ILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAG 112 (693)
Q Consensus 37 ~~~~~~~iiG~~~~~~~l~~----~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (693)
.+-.+++++|.+.+++.|.+ .+...+.+|+||+|++|||||++++++...... .|.+++.+....+..
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~-------~GLRlIev~k~~L~~- 93 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYAD-------QGLRLIEVSKEDLGD- 93 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhh-------cCceEEEECHHHhcc-
Confidence 44578899999999988665 566688899999999999999999999998865 377888887666542
Q ss_pred CcccchHHHHHHHHHHHHHh-CCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhc------CCCcEEEEEechHHHHhh
Q 005511 113 TKYRGEFEERLKKLMEEIKQ-SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA------RGELQCIGATTLDEYRKH 185 (693)
Q Consensus 113 ~~~~g~~~~~l~~~~~~~~~-~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~------~~~v~vI~~t~~~~~~~~ 185 (693)
+..++..++. ..+-|||+||+. +... ......|+.+|+ ...+.+.+|+|+-..-+.
T Consensus 94 ----------l~~l~~~l~~~~~kFIlf~DDLs--Fe~~-----d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E 156 (249)
T PF05673_consen 94 ----------LPELLDLLRDRPYKFILFCDDLS--FEEG-----DTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPE 156 (249)
T ss_pred ----------HHHHHHHHhcCCCCEEEEecCCC--CCCC-----cHHHHHHHHHhcCccccCCCcEEEEEecchhhccch
Confidence 5566666653 357899999865 3221 223456666665 345888888886432111
Q ss_pred h-h---------cC--------HHHhccCC-ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHH
Q 005511 186 I-E---------KD--------PALERRFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEAL 233 (693)
Q Consensus 186 ~-~---------l~--------~~l~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l 233 (693)
. . +. -+|..||. .|.|.+|+.++=.+|++.++.+ .++.++++.+
T Consensus 157 ~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~----~g~~~~~e~l 219 (249)
T PF05673_consen 157 SFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAER----YGLELDEEEL 219 (249)
T ss_pred hhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHH
Confidence 0 0 10 13455998 9999999999999999999875 5677775443
No 322
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.41 E-value=2.2e-12 Score=131.24 Aligned_cols=161 Identities=11% Similarity=0.124 Sum_probs=110.9
Q ss_pred ccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccc-----hhhhh
Q 005511 378 VIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFME-----RHTVS 452 (693)
Q Consensus 378 v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~-----~~~~~ 452 (693)
..++....+.+.+.+...+. .+.+||+||.|+||+++|+.+|+.+.+.+..- ..|+...+ .....
T Consensus 5 yPWl~~~~~~l~~~~~~~rl--------~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~--~~Cg~C~sC~~~~~g~HP 74 (319)
T PRK06090 5 YPWLVPVWQNWKAGLDAGRI--------PGALLLQSDEGLGVESLVELFSRALLCQNYQS--EACGFCHSCELMQSGNHP 74 (319)
T ss_pred cccHHHHHHHHHHHHHcCCc--------ceeEeeECCCCCCHHHHHHHHHHHHcCCCCCC--CCCCCCHHHHHHHcCCCC
Confidence 35677777788777765432 24699999999999999999999996644211 11222111 11111
Q ss_pred hh--cCCC--CCCcCcCccchhhHHHHc----CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEE
Q 005511 453 KL--IGSP--PGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIM 524 (693)
Q Consensus 453 ~l--~g~~--~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~ 524 (693)
++ +.+. ...++.++.+.+.+.+.. +...|++||++|+++....|+||+.||+ +..+++||+
T Consensus 75 D~~~i~p~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE-----------Pp~~t~fiL 143 (319)
T PRK06090 75 DLHVIKPEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEE-----------PAPNCLFLL 143 (319)
T ss_pred CEEEEecCcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcC-----------CCCCeEEEE
Confidence 11 1110 012233333444444433 3357999999999999999999999999 677899999
Q ss_pred ecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHH
Q 005511 525 TSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADI 596 (693)
Q Consensus 525 ~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~ 596 (693)
.|+.... +.|.+++|| +.+.|++++.+++.+.+..
T Consensus 144 ~t~~~~~------------------------------------lLpTI~SRC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 144 VTHNQKR------------------------------------LLPTIVSRC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred EECChhh------------------------------------ChHHHHhcc-eeEeCCCCCHHHHHHHHHH
Confidence 9886554 679999999 8999999999998887754
No 323
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.40 E-value=9e-12 Score=139.82 Aligned_cols=198 Identities=15% Similarity=0.154 Sum_probs=124.0
Q ss_pred HHHHHHHHhccccChHHHHHHHHHHHHHHhhc----CC--------CCCCCceEEEEeccCCCcHHHHHHHHHHHhcCC-
Q 005511 367 LLKMEETLHKRVIGQDEAVKAISRAIRRARVG----LK--------NPNRPIASFIFSGPTGVGKSELAKALAAYYFGS- 433 (693)
Q Consensus 367 ~~~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~----~~--------~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~- 433 (693)
...+...+...|+|++.+++.|.-++-....- .. ..-+...|+||+|+||||||.+|+.+++...+.
T Consensus 441 ~~~L~~SiaP~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ 520 (915)
T PTZ00111 441 YRILLDSFAPSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSI 520 (915)
T ss_pred HHHHHHHhCCeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccc
Confidence 44566777889999999887775555322100 00 112344589999999999999999999976322
Q ss_pred ---CcceeeeccccccchhhhhhhcCCCCCCcCcCccchhhHHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCC
Q 005511 434 ---EEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDS 510 (693)
Q Consensus 434 ---~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~ 510 (693)
+.++..+++...... ... ..|.. ..-.+++..+.+|+++|||++++++..|..|+.+|+.+.++..
T Consensus 521 ytsG~~~s~vgLTa~~~~------~d~---~tG~~--~le~GaLvlAdgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~ 589 (915)
T PTZ00111 521 YTSGKSSSSVGLTASIKF------NES---DNGRA--MIQPGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIA 589 (915)
T ss_pred cCCCCCCccccccchhhh------ccc---ccCcc--cccCCcEEEcCCCeEEecchhhCCHHHHHHHHHHHhCCEEEEe
Confidence 245555555543210 000 01110 0001234557789999999999999999999999999987654
Q ss_pred C-CCeee-cCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcE-EEcCCCCH
Q 005511 511 K-GRTVD-FKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEM-IVFRQLTK 587 (693)
Q Consensus 511 ~-~~~~~-~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~-v~f~~l~~ 587 (693)
. |.... ..++.+|+++|+.... |+....-.+. -.|+++|++|||-+ +..+.++.
T Consensus 590 KaGi~~tL~ar~rVIAAaNP~~gr---------yd~~~s~~en--------------i~Lp~~LLSRFDLIf~l~D~~d~ 646 (915)
T PTZ00111 590 KAGIVATLKAETAILASCNPINSR---------YNKNKAVIEN--------------INISPSLFTRFDLIYLVLDHIDQ 646 (915)
T ss_pred cCCcceecCCCeEEEEEcCCcccc---------cCcccCcccc--------------cCCChHHhhhhcEEEEecCCCCh
Confidence 3 33333 3589999999974321 1111000000 01789999999987 55566676
Q ss_pred HHHHHHHHHHH
Q 005511 588 LEVKEIADIML 598 (693)
Q Consensus 588 ~~~~~i~~~~l 598 (693)
+.=..|+++.+
T Consensus 647 ~~D~~lA~hI~ 657 (915)
T PTZ00111 647 DTDQLISLSIA 657 (915)
T ss_pred HHHHHHHHHHH
Confidence 65555655544
No 324
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.40 E-value=4e-12 Score=120.86 Aligned_cols=195 Identities=21% Similarity=0.332 Sum_probs=137.0
Q ss_pred hccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhh---
Q 005511 375 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTV--- 451 (693)
Q Consensus 375 ~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~--- 451 (693)
...+.+..+....++..... .-.+|++||||+|+||.|.+.++-+.+||.+..-..++..++..+..-
T Consensus 12 l~~l~~~~e~~~~Lksl~~~---------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklE 82 (351)
T KOG2035|consen 12 LDELIYHEELANLLKSLSST---------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLE 82 (351)
T ss_pred hhhcccHHHHHHHHHHhccc---------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEE
Confidence 34455655554444433321 112379999999999999999999999998887777777776544211
Q ss_pred ----hhh--cCCCCCCcCcCcc---chh-hHHHHc--------CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCC
Q 005511 452 ----SKL--IGSPPGYVGYTEG---GQL-TEAVRR--------RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGR 513 (693)
Q Consensus 452 ----~~l--~g~~~~~~g~~~~---~~l-~~~~~~--------~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~ 513 (693)
+.. +--.++-.|..++ ..+ .+.++. .+..|++|.|+|++..++|.+|.+.||.
T Consensus 83 istvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEk--------- 153 (351)
T KOG2035|consen 83 ISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEK--------- 153 (351)
T ss_pred EEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHH---------
Confidence 000 0000112333332 222 222221 2357999999999999999999999998
Q ss_pred eeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHH
Q 005511 514 TVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEI 593 (693)
Q Consensus 514 ~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i 593 (693)
..+++++|+.+|.-+. +-+++.+|| ..|..+.++.+|+..+
T Consensus 154 --Ys~~~RlIl~cns~Sr------------------------------------iIepIrSRC-l~iRvpaps~eeI~~v 194 (351)
T KOG2035|consen 154 --YSSNCRLILVCNSTSR------------------------------------IIEPIRSRC-LFIRVPAPSDEEITSV 194 (351)
T ss_pred --HhcCceEEEEecCccc------------------------------------chhHHhhhe-eEEeCCCCCHHHHHHH
Confidence 3568899999997776 447899999 9999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHH
Q 005511 594 ADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIM 641 (693)
Q Consensus 594 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~ 641 (693)
+...+++. + +.++++++..++++ ..|.|++++-
T Consensus 195 l~~v~~kE-------~--l~lp~~~l~rIa~k------S~~nLRrAll 227 (351)
T KOG2035|consen 195 LSKVLKKE-------G--LQLPKELLKRIAEK------SNRNLRRALL 227 (351)
T ss_pred HHHHHHHh-------c--ccCcHHHHHHHHHH------hcccHHHHHH
Confidence 98887642 2 45778999999883 3566888876
No 325
>PRK08727 hypothetical protein; Validated
Probab=99.39 E-value=9.2e-12 Score=122.93 Aligned_cols=163 Identities=20% Similarity=0.185 Sum_probs=108.3
Q ss_pred EEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCCcCcCccchhhHHHHcCCCEEEEEccC
Q 005511 408 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEI 487 (693)
Q Consensus 408 ~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEi 487 (693)
+++|+||+|||||.++++++..+...+.....+.+.++... .....+.+... .+|+|||+
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~------------------~~~~~~~l~~~--dlLiIDDi 102 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGR------------------LRDALEALEGR--SLVALDGL 102 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhh------------------HHHHHHHHhcC--CEEEEeCc
Confidence 59999999999999999999987655555555555433211 01122233323 49999999
Q ss_pred cccC--HHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHh
Q 005511 488 EKAH--PDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELK 565 (693)
Q Consensus 488 d~l~--~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~ 565 (693)
+.+. +..+..++.++.... ..+..+|+|+|..+..+..
T Consensus 103 ~~l~~~~~~~~~lf~l~n~~~----------~~~~~vI~ts~~~p~~l~~------------------------------ 142 (233)
T PRK08727 103 ESIAGQREDEVALFDFHNRAR----------AAGITLLYTARQMPDGLAL------------------------------ 142 (233)
T ss_pred ccccCChHHHHHHHHHHHHHH----------HcCCeEEEECCCChhhhhh------------------------------
Confidence 9985 445566777665421 1123488888865543211
Q ss_pred hcCchhHhhcc--CcEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHHH
Q 005511 566 QYFRPEFLNRL--DEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRL 643 (693)
Q Consensus 566 ~~~~~~l~~R~--~~~v~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~ 643 (693)
+.|+|.+|| ...+.|++|+.+++.+|+++.... ++ +.++++++++|++. ..+. .|.+.+.++.+
T Consensus 143 --~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~-------~~--l~l~~e~~~~La~~-~~rd--~r~~l~~L~~l 208 (233)
T PRK08727 143 --VLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQR-------RG--LALDEAAIDWLLTH-GERE--LAGLVALLDRL 208 (233)
T ss_pred --hhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHh-CCCC--HHHHHHHHHHH
Confidence 568999996 368999999999999999875543 13 56999999999985 3322 44444445543
Q ss_pred H
Q 005511 644 L 644 (693)
Q Consensus 644 i 644 (693)
.
T Consensus 209 ~ 209 (233)
T PRK08727 209 D 209 (233)
T ss_pred H
Confidence 3
No 326
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.39 E-value=1.1e-11 Score=136.19 Aligned_cols=195 Identities=16% Similarity=0.162 Sum_probs=119.9
Q ss_pred HHHHHHHHhccccChHHHHHHHHHHHHHHhhcCCCC-------CCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceee
Q 005511 367 LLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNP-------NRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIR 439 (693)
Q Consensus 367 ~~~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~-------~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~ 439 (693)
...+...+...++|++.++..+.-++. |...+ -+...|+||+|+||||||++|+++++.+.+ ..|..
T Consensus 194 ~~~l~~si~p~i~G~~~~k~~l~l~l~----gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r--~~~~~ 267 (509)
T smart00350 194 YERLSRSLAPSIYGHEDIKKAILLLLF----GGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPR--AVYTT 267 (509)
T ss_pred HHHHHHhhCccccCcHHHHHHHHHHHh----CCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCc--ceEcC
Confidence 345667778899999987666544442 22111 122337999999999999999999998632 12322
Q ss_pred e---ccccccchhhhhhhcCCCCCCcCcCccchhhHHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCC-CCee
Q 005511 440 L---DMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSK-GRTV 515 (693)
Q Consensus 440 ~---~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~-~~~~ 515 (693)
. ++..+... .+..+ ..|.. ..-.+.+..+.+|+++|||++++++..|..|+..|+.+.++... |...
T Consensus 268 ~~~~~~~~l~~~-----~~~~~--~~g~~--~~~~G~l~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~ 338 (509)
T smart00350 268 GKGSSAVGLTAA-----VTRDP--ETREF--TLEGGALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITT 338 (509)
T ss_pred CCCCCcCCcccc-----ceEcc--CcceE--EecCccEEecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEE
Confidence 1 11111100 00000 11110 00012334567899999999999999999999999999876533 4333
Q ss_pred e-cCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEc-CCCCHHHHHHH
Q 005511 516 D-FKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVF-RQLTKLEVKEI 593 (693)
Q Consensus 516 ~-~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f-~~l~~~~~~~i 593 (693)
. ..++.+|+|+|+.... |+....-.+.+ .+++++++|||-++.+ ++++.+.-.+|
T Consensus 339 ~l~~~~~viAa~NP~~g~---------y~~~~~~~~n~--------------~l~~~lLsRFdLi~~~~d~~~~~~d~~i 395 (509)
T smart00350 339 TLNARCSVLAAANPIGGR---------YDPKLTPEENI--------------DLPAPILSRFDLLFVVLDEVDEERDREL 395 (509)
T ss_pred EecCCcEEEEEeCCCCcc---------cCCCcChhhcc--------------CCChHHhCceeeEEEecCCCChHHHHHH
Confidence 3 3488999999964321 11100000000 1899999999987544 67788887888
Q ss_pred HHHHHH
Q 005511 594 ADIMLK 599 (693)
Q Consensus 594 ~~~~l~ 599 (693)
+++.+.
T Consensus 396 ~~~i~~ 401 (509)
T smart00350 396 AKHVVD 401 (509)
T ss_pred HHHHHH
Confidence 877654
No 327
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.39 E-value=1.7e-12 Score=133.65 Aligned_cols=143 Identities=20% Similarity=0.235 Sum_probs=97.6
Q ss_pred eEEEEeccCCCcHHHHHHHHHHHhcCCC----cceeeeccccccchhhhhhh--cCCC--CCCcCcCccchhhHHHHc--
Q 005511 407 ASFIFSGPTGVGKSELAKALAAYYFGSE----EAMIRLDMSEFMERHTVSKL--IGSP--PGYVGYTEGGQLTEAVRR-- 476 (693)
Q Consensus 407 ~~iLl~Gp~GtGKt~lA~~la~~l~~~~----~~~~~~~~~~~~~~~~~~~l--~g~~--~~~~g~~~~~~l~~~~~~-- 476 (693)
+.+||+||+|+||+++|+.+|+.+.+.+ .++-.+.........+..++ +-+. ...++.++.+.+.+.+..
T Consensus 23 ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~~ 102 (328)
T PRK05707 23 HAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQTA 102 (328)
T ss_pred eeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhcc
Confidence 4699999999999999999999996532 12211110000000000011 0000 012333333455554443
Q ss_pred --CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHH
Q 005511 477 --RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYN 554 (693)
Q Consensus 477 --~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~ 554 (693)
+...|++||++|+++...+|.||+.||+ +..+++||++|+....
T Consensus 103 ~~~~~kv~iI~~a~~m~~~aaNaLLK~LEE-----------Pp~~~~fiL~t~~~~~----------------------- 148 (328)
T PRK05707 103 QLGGRKVVLIEPAEAMNRNAANALLKSLEE-----------PSGDTVLLLISHQPSR----------------------- 148 (328)
T ss_pred ccCCCeEEEECChhhCCHHHHHHHHHHHhC-----------CCCCeEEEEEECChhh-----------------------
Confidence 3467999999999999999999999999 4568899999886554
Q ss_pred HHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHH
Q 005511 555 RIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIM 597 (693)
Q Consensus 555 ~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~ 597 (693)
+.|.+++|| +.+.|.|++.+++.+.+...
T Consensus 149 -------------ll~TI~SRc-~~~~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 149 -------------LLPTIKSRC-QQQACPLPSNEESLQWLQQA 177 (328)
T ss_pred -------------CcHHHHhhc-eeeeCCCcCHHHHHHHHHHh
Confidence 779999999 88999999999988777653
No 328
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.38 E-value=2.4e-12 Score=129.71 Aligned_cols=154 Identities=12% Similarity=0.103 Sum_probs=108.8
Q ss_pred CccCCHHHHHHHHHHHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCcccchHHH-
Q 005511 43 PVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEE- 121 (693)
Q Consensus 43 ~iiG~~~~~~~l~~~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~- 121 (693)
+.+=..+..+.+...+.. .++++|.||||||||++++.+|+.+ +.+++.+++..........|....
T Consensus 46 ~y~f~~~~~~~vl~~l~~--~~~ilL~G~pGtGKTtla~~lA~~l----------~~~~~rV~~~~~l~~~DliG~~~~~ 113 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAY--DRRVMVQGYHGTGKSTHIEQIAARL----------NWPCVRVNLDSHVSRIDLVGKDAIV 113 (327)
T ss_pred CccCCHHHHHHHHHHHhc--CCcEEEEeCCCChHHHHHHHHHHHH----------CCCeEEEEecCCCChhhcCCCceee
Confidence 344445666666666643 5789999999999999999999999 777888877554433222232110
Q ss_pred ---------HHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC----------------CCcEEEEE
Q 005511 122 ---------RLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR----------------GELQCIGA 176 (693)
Q Consensus 122 ---------~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~----------------~~v~vI~~ 176 (693)
.....+..+. ..+++|++||+|...+. +++.|..+|+. ..+.+|+|
T Consensus 114 l~~g~~~~~f~~GpL~~A~-~~g~illlDEin~a~p~--------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT 184 (327)
T TIGR01650 114 LKDGKQITEFRDGILPWAL-QHNVALCFDEYDAGRPD--------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFAT 184 (327)
T ss_pred ccCCcceeEEecCcchhHH-hCCeEEEechhhccCHH--------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEe
Confidence 0111222232 24568999999988443 66776666652 23789999
Q ss_pred echHH-------HHhhhhcCHHHhccCC-ccccCCCCHHHHHHHHHHHH
Q 005511 177 TTLDE-------YRKHIEKDPALERRFQ-PVKVPEPSVDETIQILKGLR 217 (693)
Q Consensus 177 t~~~~-------~~~~~~l~~~l~~Rf~-~i~~~~p~~~e~~~il~~~~ 217 (693)
+|+.+ |.+...++.+++.||. .+.++.|+.++-.+|+....
T Consensus 185 ~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 185 ANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred eCCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhc
Confidence 99876 6677788999999998 67899999999999988654
No 329
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.38 E-value=2.4e-12 Score=137.46 Aligned_cols=191 Identities=19% Similarity=0.239 Sum_probs=138.3
Q ss_pred hhhhhhhcCCCCCccCCHHHHHHHHHHHhc----------------------------------CCCCCeEEECCCCChH
Q 005511 31 NLTKLAEEGKLDPVVGRQPQIERVVQILGR----------------------------------RTKNNPCLIGEPGVGK 76 (693)
Q Consensus 31 ~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~----------------------------------~~~~~vLl~Gp~GtGK 76 (693)
=|.++|+|+.|-++.|-+..-+.+..||+. ++..-+||+||||-||
T Consensus 260 LWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGK 339 (877)
T KOG1969|consen 260 LWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGK 339 (877)
T ss_pred eeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCCh
Confidence 589999999999999999998888877642 2223568999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCcccchHHHHHHHHHHHH--H--hCCCeEEEEeccchhhhCCCC
Q 005511 77 TAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEI--K--QSDEIILFIDEVHTLIGAGAA 152 (693)
Q Consensus 77 T~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~--~--~~~~~vL~iDEid~l~~~~~~ 152 (693)
||||+.+|++. |+.++++++++-..+ ......+..++..- . ..+|.+|+|||||--.
T Consensus 340 TTLAHViAkqa----------GYsVvEINASDeRt~----~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~----- 400 (877)
T KOG1969|consen 340 TTLAHVIAKQA----------GYSVVEINASDERTA----PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP----- 400 (877)
T ss_pred hHHHHHHHHhc----------CceEEEecccccccH----HHHHHHHHHHHhhccccccCCCcceEEEecccCCc-----
Confidence 99999999998 999999998775432 12223333322211 1 2468899999999542
Q ss_pred CChHhHHHHHhhhhcC-----------------------CCcEEEEEechHHHHhhhhcCHHHhc--cCC-ccccCCCCH
Q 005511 153 EGAIDAANILKPSLAR-----------------------GELQCIGATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSV 206 (693)
Q Consensus 153 ~~~~~~~~~L~~~l~~-----------------------~~v~vI~~t~~~~~~~~~~l~~~l~~--Rf~-~i~~~~p~~ 206 (693)
..+.++++.++.. -.-.||++||.. --|+|+- -|- .+.|++|+.
T Consensus 401 ---~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL-------YaPaLR~Lr~~A~ii~f~~p~~ 470 (877)
T KOG1969|consen 401 ---RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL-------YAPALRPLRPFAEIIAFVPPSQ 470 (877)
T ss_pred ---HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc-------cchhhhhcccceEEEEecCCCh
Confidence 3356666666541 013688999863 3566655 343 789999999
Q ss_pred HHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhhhhHHHHH
Q 005511 207 DETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEA 260 (693)
Q Consensus 207 ~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~a 260 (693)
.-+.+-|+.++.+ .++..+..++..++.++++.+ +.+++-|.--
T Consensus 471 s~Lv~RL~~IC~r----E~mr~d~~aL~~L~el~~~DI------RsCINtLQfL 514 (877)
T KOG1969|consen 471 SRLVERLNEICHR----ENMRADSKALNALCELTQNDI------RSCINTLQFL 514 (877)
T ss_pred hHHHHHHHHHHhh----hcCCCCHHHHHHHHHHhcchH------HHHHHHHHHH
Confidence 9888888877764 788999999999999998876 5566655433
No 330
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.38 E-value=6.9e-12 Score=130.24 Aligned_cols=155 Identities=19% Similarity=0.190 Sum_probs=112.3
Q ss_pred CCCCccC-CHHHHHHHHHHHhcCCCCCe-EEECCCCChHHHHHHHHHHHHhcCCCCCC--------------CCCceEEE
Q 005511 40 KLDPVVG-RQPQIERVVQILGRRTKNNP-CLIGEPGVGKTAIAEGLAQRIASGDVPDT--------------IEGKKVIT 103 (693)
Q Consensus 40 ~~~~iiG-~~~~~~~l~~~l~~~~~~~v-Ll~Gp~GtGKT~la~~la~~l~~~~~~~~--------------~~~~~~~~ 103 (693)
.+++++| |+.+++.+...+.....+|. ||+||+|+||+++|+.+++.+.+...... .....+..
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~ 82 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHL 82 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEE
Confidence 3677888 89999999999988777776 89999999999999999999876321100 00112333
Q ss_pred EeccccccCCcccchHHHHHHHHHHHHH----hCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC--CCcEEEEEe
Q 005511 104 LDMGLLVAGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--GELQCIGAT 177 (693)
Q Consensus 104 ~~~~~l~~~~~~~g~~~~~l~~~~~~~~----~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~~t 177 (693)
+.... . ....+.++.+...+. .+...|++|||+|.+. .+..+.|++.+|. ..+.+|++|
T Consensus 83 i~~~~----~---~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~--------~~a~NaLLK~LEEPp~~~~~Il~t 147 (329)
T PRK08058 83 VAPDG----Q---SIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT--------ASAANSLLKFLEEPSGGTTAILLT 147 (329)
T ss_pred ecccc----c---cCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC--------HHHHHHHHHHhcCCCCCceEEEEe
Confidence 32210 1 011234555555443 2345699999999994 4478999999985 567788888
Q ss_pred chHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHH
Q 005511 178 TLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILK 214 (693)
Q Consensus 178 ~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~ 214 (693)
+.+. .+.++++||+..++|++|+.++..++++
T Consensus 148 ~~~~-----~ll~TIrSRc~~i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 148 ENKH-----QILPTILSRCQVVEFRPLPPESLIQRLQ 179 (329)
T ss_pred CChH-----hCcHHHHhhceeeeCCCCCHHHHHHHHH
Confidence 7665 6889999999999999999999877765
No 331
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.37 E-value=9.6e-12 Score=136.65 Aligned_cols=209 Identities=14% Similarity=0.167 Sum_probs=135.9
Q ss_pred hccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcC-------CCcceeeeccccccc
Q 005511 375 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFG-------SEEAMIRLDMSEFME 447 (693)
Q Consensus 375 ~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~-------~~~~~~~~~~~~~~~ 447 (693)
-+.+.|++..++.|...+.....+. .|...++++|+||||||++++.+.+.+-. ....++.+||..+..
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgs----gpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lst 829 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQS----GSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVH 829 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcC----CCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCC
Confidence 3578999999999999998775442 12233569999999999999999887621 124568899976654
Q ss_pred hhhh-----hhhcCCCCCCcCcCcc---chhhHHHHcC--CCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeec
Q 005511 448 RHTV-----SKLIGSPPGYVGYTEG---GQLTEAVRRR--PYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDF 517 (693)
Q Consensus 448 ~~~~-----~~l~g~~~~~~g~~~~---~~l~~~~~~~--~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~ 517 (693)
...+ ..|.+..+ ..|.... ..++..+... ...||+|||||.+....+..|+.+++.... ..
T Consensus 830 p~sIYqvI~qqL~g~~P-~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~--------s~ 900 (1164)
T PTZ00112 830 PNAAYQVLYKQLFNKKP-PNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTK--------IN 900 (1164)
T ss_pred HHHHHHHHHHHHcCCCC-CccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhc--------cC
Confidence 4322 22334322 1222111 2233333221 235899999999987778888888874221 12
Q ss_pred CCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCc-EEEcCCCCHHHHHHHHHH
Q 005511 518 KNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDE-MIVFRQLTKLEVKEIADI 596 (693)
Q Consensus 518 ~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~-~v~f~~l~~~~~~~i~~~ 596 (693)
..+.+|+.+|.-. +...+.|.+.+||.. .+.|+||+.+++.+|+..
T Consensus 901 SKLiLIGISNdlD---------------------------------LperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~ 947 (1164)
T PTZ00112 901 SKLVLIAISNTMD---------------------------------LPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKE 947 (1164)
T ss_pred CeEEEEEecCchh---------------------------------cchhhhhhhhhccccccccCCCCCHHHHHHHHHH
Confidence 3567888888321 011156788888843 489999999999999988
Q ss_pred HHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHH
Q 005511 597 MLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIM 641 (693)
Q Consensus 597 ~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~ 641 (693)
.+... ...++++|++++++....-. .+.|++|.
T Consensus 948 RAe~A---------~gVLdDdAIELIArkVAq~S---GDARKALD 980 (1164)
T PTZ00112 948 RLENC---------KEIIDHTAIQLCARKVANVS---GDIRKALQ 980 (1164)
T ss_pred HHHhC---------CCCCCHHHHHHHHHhhhhcC---CHHHHHHH
Confidence 87642 12489999999988533221 24556655
No 332
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=3.4e-12 Score=130.70 Aligned_cols=128 Identities=23% Similarity=0.373 Sum_probs=98.8
Q ss_pred EEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCCcCcCccchhhHHHHc-CCCEEEEEcc
Q 005511 408 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRR-RPYTVVLFDE 486 (693)
Q Consensus 408 ~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~-~~~~vl~iDE 486 (693)
+.|||||||||||++..|||+++ +..++-++++++..... |...+.. .+.+||+|++
T Consensus 237 GYLLYGPPGTGKSS~IaAmAn~L---~ydIydLeLt~v~~n~d-------------------Lr~LL~~t~~kSIivIED 294 (457)
T KOG0743|consen 237 GYLLYGPPGTGKSSFIAAMANYL---NYDIYDLELTEVKLDSD-------------------LRHLLLATPNKSILLIED 294 (457)
T ss_pred cceeeCCCCCCHHHHHHHHHhhc---CCceEEeeeccccCcHH-------------------HHHHHHhCCCCcEEEEee
Confidence 59999999999999999999999 78888888887765432 4444443 3468999999
Q ss_pred CcccC------------------HHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCc
Q 005511 487 IEKAH------------------PDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDE 548 (693)
Q Consensus 487 id~l~------------------~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~ 548 (693)
||..- .-.+..||..+++=- . ..| ..-++|+|||....
T Consensus 295 IDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlw-S-scg-----~ERIivFTTNh~Ek----------------- 350 (457)
T KOG0743|consen 295 IDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLW-S-SCG-----DERIIVFTTNHKEK----------------- 350 (457)
T ss_pred cccccccccccccccccccCCcceeehHHhhhhhcccc-c-cCC-----CceEEEEecCChhh-----------------
Confidence 99861 125677888887511 1 011 24479999996554
Q ss_pred ccchHHHHHHHHHHHHhhcCchhHhh--ccCcEEEcCCCCHHHHHHHHHHHHHH
Q 005511 549 KDSSYNRIKSLVTEELKQYFRPEFLN--RLDEMIVFRQLTKLEVKEIADIMLKE 600 (693)
Q Consensus 549 ~~~~~~~l~~~~~~~l~~~~~~~l~~--R~~~~v~f~~l~~~~~~~i~~~~l~~ 600 (693)
++|+|++ |+|..|.+..-+.+.+..++.++|..
T Consensus 351 -------------------LDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~ 385 (457)
T KOG0743|consen 351 -------------------LDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGI 385 (457)
T ss_pred -------------------cCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCC
Confidence 9999996 99999999999999999999888753
No 333
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.37 E-value=3.4e-12 Score=131.82 Aligned_cols=162 Identities=12% Similarity=0.121 Sum_probs=110.2
Q ss_pred cChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCC----cceeeeccccccchhhhhhh
Q 005511 379 IGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE----EAMIRLDMSEFMERHTVSKL 454 (693)
Q Consensus 379 ~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~----~~~~~~~~~~~~~~~~~~~l 454 (693)
.++..+.+++.+.+...+. .+.+||+||+|+||+++|+++|+.+.+.+ .++..+.........+.-++
T Consensus 5 PWl~~~~~~l~~~~~~~rl--------~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~ 76 (334)
T PRK07993 5 PWLRPDYEQLVGSYQAGRG--------HHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDY 76 (334)
T ss_pred CCChHHHHHHHHHHHcCCc--------ceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCE
Confidence 4667777777777765432 24689999999999999999999996532 12221110001100000011
Q ss_pred --cCCCC--CCcCcCccchhhHHHHc----CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEec
Q 005511 455 --IGSPP--GYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTS 526 (693)
Q Consensus 455 --~g~~~--~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~t 526 (693)
+-+.. ..++.++.+.+.+.+.. +...|++||++|+++....|+||+.||+ +..+++||+.|
T Consensus 77 ~~i~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE-----------Pp~~t~fiL~t 145 (334)
T PRK07993 77 YTLTPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEE-----------PPENTWFFLAC 145 (334)
T ss_pred EEEecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcC-----------CCCCeEEEEEE
Confidence 10100 12333333555554443 3457999999999999999999999999 67789999998
Q ss_pred CCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHH
Q 005511 527 NVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADI 596 (693)
Q Consensus 527 n~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~ 596 (693)
+.... +.|.+++|| +.+.|++++.+++.+.+..
T Consensus 146 ~~~~~------------------------------------lLpTIrSRC-q~~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 146 REPAR------------------------------------LLATLRSRC-RLHYLAPPPEQYALTWLSR 178 (334)
T ss_pred CChhh------------------------------------ChHHHHhcc-ccccCCCCCHHHHHHHHHH
Confidence 86554 779999999 7899999999998877743
No 334
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.36 E-value=1.2e-11 Score=118.31 Aligned_cols=162 Identities=20% Similarity=0.177 Sum_probs=109.3
Q ss_pred HHHHHHhcCCC-CCeEEECCCCChHHHHHHHHHHHHhcCCCCCC--------------CCCceEEEEeccccccCCcccc
Q 005511 53 RVVQILGRRTK-NNPCLIGEPGVGKTAIAEGLAQRIASGDVPDT--------------IEGKKVITLDMGLLVAGTKYRG 117 (693)
Q Consensus 53 ~l~~~l~~~~~-~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~--------------~~~~~~~~~~~~~l~~~~~~~g 117 (693)
.+.+.+..... +.+||+||+|+|||++++.+++.+.+...... .....+..+.... ..
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~----~~--- 75 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG----QS--- 75 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc----Cc---
Confidence 35556655555 45889999999999999999999865311000 0011122222111 00
Q ss_pred hHHHHHHHHHHHHHh----CCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCC--CcEEEEEechHHHHhhhhcCHH
Q 005511 118 EFEERLKKLMEEIKQ----SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG--ELQCIGATTLDEYRKHIEKDPA 191 (693)
Q Consensus 118 ~~~~~l~~~~~~~~~----~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~--~v~vI~~t~~~~~~~~~~l~~~ 191 (693)
...+.++.++..+.. +...|++|||+|.+.. +.++.|+..++.. ...+|++++... .+.++
T Consensus 76 ~~~~~i~~i~~~~~~~~~~~~~kviiide~~~l~~--------~~~~~Ll~~le~~~~~~~~il~~~~~~-----~l~~~ 142 (188)
T TIGR00678 76 IKVDQVRELVEFLSRTPQESGRRVVIIEDAERMNE--------AAANALLKTLEEPPPNTLFILITPSPE-----KLLPT 142 (188)
T ss_pred CCHHHHHHHHHHHccCcccCCeEEEEEechhhhCH--------HHHHHHHHHhcCCCCCeEEEEEECChH-----hChHH
Confidence 112345555555543 4567999999999953 3677788888753 366777777553 68899
Q ss_pred HhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhh
Q 005511 192 LERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYI 244 (693)
Q Consensus 192 l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 244 (693)
+++|+..+.|++|+.++..++++.. + ++++++..++..+.|.+
T Consensus 143 i~sr~~~~~~~~~~~~~~~~~l~~~--------g--i~~~~~~~i~~~~~g~~ 185 (188)
T TIGR00678 143 IRSRCQVLPFPPLSEEALLQWLIRQ--------G--ISEEAAELLLALAGGSP 185 (188)
T ss_pred HHhhcEEeeCCCCCHHHHHHHHHHc--------C--CCHHHHHHHHHHcCCCc
Confidence 9999999999999999998888743 2 67888988888887653
No 335
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.36 E-value=2.4e-11 Score=129.53 Aligned_cols=197 Identities=17% Similarity=0.238 Sum_probs=122.5
Q ss_pred ccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCC------Ccceeeeccccccchh
Q 005511 376 KRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGS------EEAMIRLDMSEFMERH 449 (693)
Q Consensus 376 ~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~------~~~~~~~~~~~~~~~~ 449 (693)
+.++|++..++.|...+.....+... ++++++||||||||++++.+++.+... ...++.++|.......
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~-----~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~ 89 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRP-----SNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLY 89 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCC-----CcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHH
Confidence 46899999999999998875433222 359999999999999999999876311 1467888887665432
Q ss_pred hh-----hhhc--CCCCCCcCcCcc---chhhHHHHc-CCCEEEEEccCcccCH---HHHHHHHHHhhcceeeCCCCCee
Q 005511 450 TV-----SKLI--GSPPGYVGYTEG---GQLTEAVRR-RPYTVVLFDEIEKAHP---DVFNMMLQILEDGRLTDSKGRTV 515 (693)
Q Consensus 450 ~~-----~~l~--g~~~~~~g~~~~---~~l~~~~~~-~~~~vl~iDEid~l~~---~~~~~Ll~~le~~~~~~~~~~~~ 515 (693)
.. ..+. |......|.... ..+.+.+.. ..+.||+|||+|.+.. .++..|+.+.+... .
T Consensus 90 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~--------~ 161 (365)
T TIGR02928 90 QVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGD--------L 161 (365)
T ss_pred HHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccC--------C
Confidence 11 1222 221111221111 223344433 3457899999999942 33444444422211 1
Q ss_pred ecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccC-cEEEcCCCCHHHHHHHH
Q 005511 516 DFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLD-EMIVFRQLTKLEVKEIA 594 (693)
Q Consensus 516 ~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~-~~v~f~~l~~~~~~~i~ 594 (693)
...++.+|+++|.... ...+.+.+.+||. ..+.|+|++.+++.+|+
T Consensus 162 ~~~~v~lI~i~n~~~~---------------------------------~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il 208 (365)
T TIGR02928 162 DNAKVGVIGISNDLKF---------------------------------RENLDPRVKSSLCEEEIIFPPYDAEELRDIL 208 (365)
T ss_pred CCCeEEEEEEECCcch---------------------------------HhhcCHHHhccCCcceeeeCCCCHHHHHHHH
Confidence 2246778888874321 0116677788884 57999999999999999
Q ss_pred HHHHHHHHHHHhcCCCeEEeCHHHHHHHHHh
Q 005511 595 DIMLKEVFDRLKTKDIELQVTERFRERVVEE 625 (693)
Q Consensus 595 ~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~ 625 (693)
...+... + ....+++++++++...
T Consensus 209 ~~r~~~~---~----~~~~~~~~~l~~i~~~ 232 (365)
T TIGR02928 209 ENRAEKA---F----YDGVLDDGVIPLCAAL 232 (365)
T ss_pred HHHHHhh---c----cCCCCChhHHHHHHHH
Confidence 8877521 1 1123778888877654
No 336
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=4.2e-11 Score=116.26 Aligned_cols=187 Identities=24% Similarity=0.318 Sum_probs=125.2
Q ss_pred ccCCHHHHHHHHHHHh--------c-------CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccc
Q 005511 44 VVGRQPQIERVVQILG--------R-------RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGL 108 (693)
Q Consensus 44 iiG~~~~~~~l~~~l~--------~-------~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 108 (693)
+|||+..++-|.-++. . -..+|+||.||+|||||.||+.+|+.+ +.++--.++..
T Consensus 63 VIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~L----------nVPFaiADATt 132 (408)
T COG1219 63 VIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKIL----------NVPFAIADATT 132 (408)
T ss_pred eecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHh----------CCCeeeccccc
Confidence 7999988875322111 1 235799999999999999999999999 77777778777
Q ss_pred cccCCcccch-HHHHHHHHHHHH----HhCCCeEEEEeccchhhhCCCC-C-----ChHhHHHHHhhhhcC---------
Q 005511 109 LVAGTKYRGE-FEERLKKLMEEI----KQSDEIILFIDEVHTLIGAGAA-E-----GAIDAANILKPSLAR--------- 168 (693)
Q Consensus 109 l~~~~~~~g~-~~~~l~~~~~~~----~~~~~~vL~iDEid~l~~~~~~-~-----~~~~~~~~L~~~l~~--------- 168 (693)
+.. ..|+|+ .+.-+.+++..+ .+...+|+||||+|.+...... . .+..++.+|+++++.
T Consensus 133 LTE-AGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqG 211 (408)
T COG1219 133 LTE-AGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQG 211 (408)
T ss_pred hhh-ccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCC
Confidence 765 456674 455556666554 2445679999999999754321 1 234578888888862
Q ss_pred --------------CCcEEEEEec---------------------------------------hHHHHhhhhcCHHHhcc
Q 005511 169 --------------GELQCIGATT---------------------------------------LDEYRKHIEKDPALERR 195 (693)
Q Consensus 169 --------------~~v~vI~~t~---------------------------------------~~~~~~~~~l~~~l~~R 195 (693)
..+.+|..+. .++.--.+.+-|.|..|
T Consensus 212 GRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGR 291 (408)
T COG1219 212 GRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGR 291 (408)
T ss_pred CCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcc
Confidence 0122222111 01111124567888889
Q ss_pred CC-ccccCCCCHHHHHHHHHH----HHHhHhh---h--cCcccChHHHHHHHHhhh
Q 005511 196 FQ-PVKVPEPSVDETIQILKG----LRERYEI---H--HKLRYTDEALVSAAQLSY 241 (693)
Q Consensus 196 f~-~i~~~~p~~~e~~~il~~----~~~~~~~---~--~~~~~~~~~l~~l~~~~~ 241 (693)
++ ...+..++.+++.+||.. +.++|.. . -.+.++++++..+|+.+-
T Consensus 292 lPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~ 347 (408)
T COG1219 292 LPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAI 347 (408)
T ss_pred cceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHHH
Confidence 99 569999999999999984 3344332 2 234578999999988763
No 337
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.35 E-value=5.5e-12 Score=129.62 Aligned_cols=142 Identities=15% Similarity=0.166 Sum_probs=96.3
Q ss_pred eEEEEeccCCCcHHHHHHHHHHHhcCCC-----cceeeeccccccchhhhhhh--cCCC---------------------
Q 005511 407 ASFIFSGPTGVGKSELAKALAAYYFGSE-----EAMIRLDMSEFMERHTVSKL--IGSP--------------------- 458 (693)
Q Consensus 407 ~~iLl~Gp~GtGKt~lA~~la~~l~~~~-----~~~~~~~~~~~~~~~~~~~l--~g~~--------------------- 458 (693)
+.+||+||+|+||+++|+.+|+.+.+.. .++..+............++ +.+.
T Consensus 22 ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~~~~ 101 (342)
T PRK06964 22 HALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADADEG 101 (342)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchhhcc
Confidence 4699999999999999999999996533 12221111100100000010 1000
Q ss_pred -------CCCcCcCccchhhHHHHc----CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecC
Q 005511 459 -------PGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 527 (693)
Q Consensus 459 -------~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn 527 (693)
+..++.++.+.+.+.+.. +...|++||++|+++....|+||+.||+ +.++++||++|+
T Consensus 102 ~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE-----------Pp~~t~fiL~t~ 170 (342)
T PRK06964 102 GKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEE-----------PPPGTVFLLVSA 170 (342)
T ss_pred cccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcC-----------CCcCcEEEEEEC
Confidence 011222222334343332 3357999999999999999999999998 677889999987
Q ss_pred CChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHH
Q 005511 528 VGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADI 596 (693)
Q Consensus 528 ~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~ 596 (693)
.... +.|.+++|| +.+.|+|++.+++.+.+..
T Consensus 171 ~~~~------------------------------------LLpTI~SRc-q~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 171 RIDR------------------------------------LLPTILSRC-RQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred Chhh------------------------------------CcHHHHhcC-EEEEecCCCHHHHHHHHHH
Confidence 6554 789999999 9999999999999888754
No 338
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.35 E-value=3.4e-11 Score=122.72 Aligned_cols=209 Identities=20% Similarity=0.219 Sum_probs=130.3
Q ss_pred cccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcC----CCcceeeecc----ccccch
Q 005511 377 RVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFG----SEEAMIRLDM----SEFMER 448 (693)
Q Consensus 377 ~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~----~~~~~~~~~~----~~~~~~ 448 (693)
+++|++++++.+...++.+..+...+ ...++|+||||||||++|++|++.+.. ...+++.+.. +.+.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~---r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp~~e~ 128 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEER---KQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESPMHED 128 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCC---CcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCCCccC
Confidence 89999999999999998887654322 234899999999999999999999822 1235555544 211110
Q ss_pred ------------------------------hhhhhh----cCC-----------------------C--------CCCcC
Q 005511 449 ------------------------------HTVSKL----IGS-----------------------P--------PGYVG 463 (693)
Q Consensus 449 ------------------------------~~~~~l----~g~-----------------------~--------~~~~g 463 (693)
.....+ -|. | +..+|
T Consensus 129 Pl~l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~~qdi~~L~G 208 (361)
T smart00763 129 PLHLFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPKDENNQDISELTG 208 (361)
T ss_pred CcccCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCCCCCcccHHHHhc
Confidence 000000 010 0 00111
Q ss_pred -----------cCccch--hhHHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCCh
Q 005511 464 -----------YTEGGQ--LTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGS 530 (693)
Q Consensus 464 -----------~~~~~~--l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~ 530 (693)
.+.... ..+.+..+.+||+-|+|+.+++.++++.||.+++++.+...+......-+.+||++||...
T Consensus 209 ~vd~~k~~~~~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e 288 (361)
T smart00763 209 KVDIRKLEIYSESDPRAFSYDGALNRANRGILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESE 288 (361)
T ss_pred ccCHHHhcccCCCCCeEEeccCccccccCceEEEeehhcCCHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHH
Confidence 000000 0123445667999999999999999999999999999986543323344678999998432
Q ss_pred hhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCC-CCHHHHHHHHHHHHHHHHHHHhcCC
Q 005511 531 SVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQ-LTKLEVKEIADIMLKEVFDRLKTKD 609 (693)
Q Consensus 531 ~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~-l~~~~~~~i~~~~l~~~~~~~~~~~ 609 (693)
-. .-.......+|.+|| .++.++. ++.++=.+|.++.+..-. .
T Consensus 289 ~~-----------------------------~~~~~k~~eaf~dR~-~~i~vpY~l~~~~E~~Iy~k~~~~s~------~ 332 (361)
T smart00763 289 WQ-----------------------------RFKSNKKNEALLDRI-IKVKVPYCLRVSEEAQIYEKLLRNSD------L 332 (361)
T ss_pred Hh-----------------------------hhhccccchhhhhce-EEEeCCCcCCHHHHHHHHHHHhccCc------C
Confidence 10 000011358999999 5777775 466777788877665311 1
Q ss_pred CeEEeCHHHHHHHHH
Q 005511 610 IELQVTERFRERVVE 624 (693)
Q Consensus 610 ~~l~~~~~~~~~l~~ 624 (693)
...++.+-+++.++.
T Consensus 333 ~~~~~aP~~le~aa~ 347 (361)
T smart00763 333 TEAHIAPHTLEMAAL 347 (361)
T ss_pred cccccCchHHHHHHH
Confidence 235677777776665
No 339
>PRK05642 DNA replication initiation factor; Validated
Probab=99.34 E-value=3e-11 Score=119.27 Aligned_cols=165 Identities=18% Similarity=0.284 Sum_probs=113.1
Q ss_pred eEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCCcCcCccchhhHHHHcCCCEEEEEcc
Q 005511 407 ASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDE 486 (693)
Q Consensus 407 ~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDE 486 (693)
.+++|+||+|||||.+++++++.+...+..++.++..++... ...+.+.++.. .+|+||+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~------------------~~~~~~~~~~~--d~LiiDD 105 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR------------------GPELLDNLEQY--ELVCLDD 105 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh------------------hHHHHHhhhhC--CEEEEec
Confidence 358999999999999999999887544566666666655421 01233444444 3899999
Q ss_pred CcccC--HHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHH
Q 005511 487 IEKAH--PDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEEL 564 (693)
Q Consensus 487 id~l~--~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l 564 (693)
++.+. +..+..|+.+++.-. ..+..+|++++..+..+.
T Consensus 106 i~~~~~~~~~~~~Lf~l~n~~~----------~~g~~ilits~~~p~~l~------------------------------ 145 (234)
T PRK05642 106 LDVIAGKADWEEALFHLFNRLR----------DSGRRLLLAASKSPRELP------------------------------ 145 (234)
T ss_pred hhhhcCChHHHHHHHHHHHHHH----------hcCCEEEEeCCCCHHHcC------------------------------
Confidence 99874 455677777775411 113357777775543221
Q ss_pred hhcCchhHhhccC--cEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHH
Q 005511 565 KQYFRPEFLNRLD--EMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMR 642 (693)
Q Consensus 565 ~~~~~~~l~~R~~--~~v~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~ 642 (693)
.+.|+|.+||. .++.+.+++.+++..+++..... .+ +.++++++++|++. ++.+ +|.+...++.
T Consensus 146 --~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~-------~~--~~l~~ev~~~L~~~-~~~d--~r~l~~~l~~ 211 (234)
T PRK05642 146 --IKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASR-------RG--LHLTDEVGHFILTR-GTRS--MSALFDLLER 211 (234)
T ss_pred --ccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHh-cCCC--HHHHHHHHHH
Confidence 14689999994 56888999999999998754322 13 56999999999985 5444 7778777775
Q ss_pred HHH
Q 005511 643 LLE 645 (693)
Q Consensus 643 ~i~ 645 (693)
+..
T Consensus 212 l~~ 214 (234)
T PRK05642 212 LDQ 214 (234)
T ss_pred HHH
Confidence 543
No 340
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.34 E-value=5e-11 Score=128.45 Aligned_cols=195 Identities=18% Similarity=0.206 Sum_probs=124.7
Q ss_pred ccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCC--Ccceeeeccccccchhh---
Q 005511 376 KRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGS--EEAMIRLDMSEFMERHT--- 450 (693)
Q Consensus 376 ~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~--~~~~~~~~~~~~~~~~~--- 450 (693)
..++|.+..++.|...+.....+..+ .+++++||||||||++++.+++.+... +..++.++|........
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~-----~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRP-----LNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCC-----CeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHH
Confidence 56889999999998888765433222 259999999999999999999887332 36788888876543211
Q ss_pred --hhhhcCCCCCCcCcCcc---chhhHHHHc-CCCEEEEEccCcccC----HHHHHHHHHHhhcceeeCCCCCeeecCCe
Q 005511 451 --VSKLIGSPPGYVGYTEG---GQLTEAVRR-RPYTVVLFDEIEKAH----PDVFNMMLQILEDGRLTDSKGRTVDFKNT 520 (693)
Q Consensus 451 --~~~l~g~~~~~~g~~~~---~~l~~~~~~-~~~~vl~iDEid~l~----~~~~~~Ll~~le~~~~~~~~~~~~~~~~~ 520 (693)
...+.+......|.... ..+.+.+.. ..+.||+|||+|.+. .+.+..|+..++.. ...++
T Consensus 105 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~----------~~~~v 174 (394)
T PRK00411 105 EIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY----------PGARI 174 (394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc----------CCCeE
Confidence 12222311112222111 223333333 334789999999986 45666666666541 11256
Q ss_pred EEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccC-cEEEcCCCCHHHHHHHHHHHHH
Q 005511 521 LLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLD-EMIVFRQLTKLEVKEIADIMLK 599 (693)
Q Consensus 521 ~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~-~~v~f~~l~~~~~~~i~~~~l~ 599 (693)
.+|+++|.... ...+++.+.+|+. ..+.|+||+.+++.+|+...+.
T Consensus 175 ~vI~i~~~~~~---------------------------------~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~ 221 (394)
T PRK00411 175 GVIGISSDLTF---------------------------------LYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVE 221 (394)
T ss_pred EEEEEECCcch---------------------------------hhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHH
Confidence 68888774321 0115667777773 4689999999999999987764
Q ss_pred HHHHHHhcCCCeEEeCHHHHHHHHHh
Q 005511 600 EVFDRLKTKDIELQVTERFRERVVEE 625 (693)
Q Consensus 600 ~~~~~~~~~~~~l~~~~~~~~~l~~~ 625 (693)
.- +. .-.+++++++.+++.
T Consensus 222 ~~---~~----~~~~~~~~l~~i~~~ 240 (394)
T PRK00411 222 EG---FY----PGVVDDEVLDLIADL 240 (394)
T ss_pred hh---cc----cCCCCHhHHHHHHHH
Confidence 21 10 124788999888875
No 341
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.33 E-value=6.5e-11 Score=124.86 Aligned_cols=152 Identities=16% Similarity=0.137 Sum_probs=92.0
Q ss_pred CccCCHHHHHHHHHHHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCcccchH-HH
Q 005511 43 PVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEF-EE 121 (693)
Q Consensus 43 ~iiG~~~~~~~l~~~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~ 121 (693)
.++|++++++.+...+. ...|+||.||||||||++|+++++.+... + .+..+.+.-. ......|.. ..
T Consensus 21 ~i~gre~vI~lll~aal--ag~hVLL~GpPGTGKT~LAraLa~~~~~~-------~-~F~~~~~~ft-tp~DLfG~l~i~ 89 (498)
T PRK13531 21 GLYERSHAIRLCLLAAL--SGESVFLLGPPGIAKSLIARRLKFAFQNA-------R-AFEYLMTRFS-TPEEVFGPLSIQ 89 (498)
T ss_pred hccCcHHHHHHHHHHHc--cCCCEEEECCCChhHHHHHHHHHHHhccc-------C-cceeeeeeec-CcHHhcCcHHHh
Confidence 48999999999888876 46899999999999999999999987321 1 1222221100 000111110 00
Q ss_pred HH--HHHHHHHHhC---CCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCC------------cEEEEEechHHHHh
Q 005511 122 RL--KKLMEEIKQS---DEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGE------------LQCIGATTLDEYRK 184 (693)
Q Consensus 122 ~l--~~~~~~~~~~---~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~------------v~vI~~t~~~~~~~ 184 (693)
.. ...+.....+ ...+||+||++.+.+ ..++.|...++.+. .+++++||+.+-.+
T Consensus 90 ~~~~~g~f~r~~~G~L~~A~lLfLDEI~rasp--------~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g 161 (498)
T PRK13531 90 ALKDEGRYQRLTSGYLPEAEIVFLDEIWKAGP--------AILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEAD 161 (498)
T ss_pred hhhhcCchhhhcCCccccccEEeecccccCCH--------HHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccC
Confidence 00 0011111111 112899999998744 47888888885322 34566666432100
Q ss_pred hhhcCHHHhccCC-ccccCCCCH-HHHHHHHHH
Q 005511 185 HIEKDPALERRFQ-PVKVPEPSV-DETIQILKG 215 (693)
Q Consensus 185 ~~~l~~~l~~Rf~-~i~~~~p~~-~e~~~il~~ 215 (693)
...+++..||. .+.+|+|+. ++..+++..
T Consensus 162 --~~leAL~DRFliri~vp~l~~~~~e~~lL~~ 192 (498)
T PRK13531 162 --SSLEALYDRMLIRLWLDKVQDKANFRSMLTS 192 (498)
T ss_pred --CchHHhHhhEEEEEECCCCCchHHHHHHHHc
Confidence 13358999997 789999974 555777764
No 342
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.33 E-value=1e-11 Score=126.50 Aligned_cols=180 Identities=21% Similarity=0.209 Sum_probs=116.3
Q ss_pred HHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccc-----
Q 005511 373 TLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFME----- 447 (693)
Q Consensus 373 ~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~----- 447 (693)
.++..++||+..+..|........ .+++|+.|+.|||||+++|+||..|.. ...+. +|.--.+
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~P~---------iggvLI~G~kGtaKSt~~Rala~LLp~--~~~V~-gc~f~cdP~~P~ 81 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVDPQ---------IGGALIAGEKGTAKSTLARALADLLPE--IEVVI-GCPFNCDPDDPE 81 (423)
T ss_pred cchhhhcCchHHHHHHhhhhcccc---------cceeEEecCCCccHHHHHHHHHHhCCc--cceec-CCCCCCCCCChh
Confidence 457889999998776644432222 347999999999999999999999821 11111 2210000
Q ss_pred ------------------------------hhhhhhhcCCCCCCc--CcCccchhhHHHHcCCCEEEEEccCcccCHHHH
Q 005511 448 ------------------------------RHTVSKLIGSPPGYV--GYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVF 495 (693)
Q Consensus 448 ------------------------------~~~~~~l~g~~~~~~--g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~ 495 (693)
.....+++|+..-.. ......--.+.+.++++|||||||+..|+..++
T Consensus 82 ~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lv 161 (423)
T COG1239 82 EMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLV 161 (423)
T ss_pred hhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHH
Confidence 001111333211000 000000002345567789999999999999999
Q ss_pred HHHHHHhhcce-eeCCCCCeeecC-CeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHh
Q 005511 496 NMMLQILEDGR-LTDSKGRTVDFK-NTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFL 573 (693)
Q Consensus 496 ~~Ll~~le~~~-~~~~~~~~~~~~-~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~ 573 (693)
+.||..+++|. ..-..|..+.++ ++++|.|+|+... .+.|.|+
T Consensus 162 d~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeG-----------------------------------eLrpqLl 206 (423)
T COG1239 162 DALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEG-----------------------------------ELRPQLL 206 (423)
T ss_pred HHHHHHHHhCCceeeeCceeeccCccEEEEeecCcccc-----------------------------------ccchhhH
Confidence 99999999984 333457666665 9999999996532 1789999
Q ss_pred hccCcEEEcCCC-CHHHHHHHHHHHHH
Q 005511 574 NRLDEMIVFRQL-TKLEVKEIADIMLK 599 (693)
Q Consensus 574 ~R~~~~v~f~~l-~~~~~~~i~~~~l~ 599 (693)
+||...|...++ +.++..+|+++.+.
T Consensus 207 DRfg~~v~~~~~~~~~~rv~Ii~r~~~ 233 (423)
T COG1239 207 DRFGLEVDTHYPLDLEERVEIIRRRLA 233 (423)
T ss_pred hhhcceeeccCCCCHHHHHHHHHHHHH
Confidence 999888777755 67777777766544
No 343
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.32 E-value=1.1e-11 Score=129.92 Aligned_cols=146 Identities=29% Similarity=0.390 Sum_probs=98.4
Q ss_pred cccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCc---------------------
Q 005511 377 RVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE--------------------- 435 (693)
Q Consensus 377 ~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~--------------------- 435 (693)
.+++++.++..+........ .. .+.+||+||||+|||++|.++|+.+++...
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~---~~----~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG---RL----PHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHP 74 (325)
T ss_pred CcccchhHHHHHHHHHHhcC---CC----CceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCC
Confidence 45677777777766666432 11 113999999999999999999999975442
Q ss_pred ceeeeccccccchhhhhhhcCCCCCCcCcCccchhhHHHHc----CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCC
Q 005511 436 AMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSK 511 (693)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~ 511 (693)
.+..++.++..... +.....+.+...... ++..|++|||+|.++++.+|+|++.+|+
T Consensus 75 d~lel~~s~~~~~~------------i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEe------- 135 (325)
T COG0470 75 DFLELNPSDLRKID------------IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEE------- 135 (325)
T ss_pred ceEEecccccCCCc------------chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhcc-------
Confidence 23333322221100 011111222222211 3457999999999999999999999998
Q ss_pred CCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHH
Q 005511 512 GRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLE 589 (693)
Q Consensus 512 ~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~ 589 (693)
+..+++||++||.... +-|.+.+|| ..+.|.|++...
T Consensus 136 ----p~~~~~~il~~n~~~~------------------------------------il~tI~SRc-~~i~f~~~~~~~ 172 (325)
T COG0470 136 ----PPKNTRFILITNDPSK------------------------------------ILPTIRSRC-QRIRFKPPSRLE 172 (325)
T ss_pred ----CCCCeEEEEEcCChhh------------------------------------ccchhhhcc-eeeecCCchHHH
Confidence 5678899999995554 567999999 999999854443
No 344
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.32 E-value=2.6e-11 Score=130.48 Aligned_cols=179 Identities=15% Similarity=0.198 Sum_probs=110.4
Q ss_pred ccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccch-------
Q 005511 376 KRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMER------- 448 (693)
Q Consensus 376 ~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~------- 448 (693)
..++||..+++.+.-++. +..+++|.||||+|||++++.++..+..... -..++++.+.+-
T Consensus 191 ~~v~Gq~~~~~al~laa~-----------~G~~llliG~~GsGKTtLak~L~gllpp~~g-~e~le~~~i~s~~g~~~~~ 258 (506)
T PRK09862 191 SDVIGQEQGKRGLEITAA-----------GGHNLLLIGPPGTGKTMLASRINGLLPDLSN-EEALESAAILSLVNAESVQ 258 (506)
T ss_pred EEEECcHHHHhhhheecc-----------CCcEEEEECCCCCcHHHHHHHHhccCCCCCC-cEEEecchhhhhhcccccc
Confidence 467788877655432222 1236999999999999999999987632111 112333322210
Q ss_pred --------------hhhhhhcCCCCCCcCcCccchhhHHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCC-C-
Q 005511 449 --------------HTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSK-G- 512 (693)
Q Consensus 449 --------------~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~-~- 512 (693)
.+...++|. .. ..-.+.+..+.+|+||+||++.+++.+++.|++.||+|.++... |
T Consensus 259 ~~~~~rPfr~ph~~~s~~~l~GG-------g~-~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~ 330 (506)
T PRK09862 259 KQWRQRPFRSPHHSASLTAMVGG-------GA-IPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRA 330 (506)
T ss_pred CCcCCCCccCCCccchHHHHhCC-------Cc-eehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCc
Confidence 011112221 00 01125677788999999999999999999999999999986443 3
Q ss_pred CeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHH
Q 005511 513 RTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLE 589 (693)
Q Consensus 513 ~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~ 589 (693)
......++.+|+|+|... +|+-.... -.+... ........++.++++|||..+.+++++.++
T Consensus 331 ~~~~pa~f~lIAa~NP~p---------cG~~~~~~-c~c~~~-----~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~ 392 (506)
T PRK09862 331 KITYPARFQLVAAMNPSP---------TGHYQGNH-NRCTPE-----QTLRYLNRLSGPFLDRFDLSLEIPLPPPGI 392 (506)
T ss_pred ceeccCCEEEEEeecCcc---------ceecCCCC-CCcCHH-----HHHHHHhhCCHhHHhhccEEEEeCCCCHHH
Confidence 333456999999999753 12210000 000000 011233448999999999999999886543
No 345
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.31 E-value=1.4e-11 Score=132.49 Aligned_cols=174 Identities=16% Similarity=0.234 Sum_probs=117.2
Q ss_pred eEEEEeccCCCcHHHHHHHHHHHhcCC--CcceeeeccccccchhhhhhhcCCCCCCcCcCccchhhHHHHcCCCEEEEE
Q 005511 407 ASFIFSGPTGVGKSELAKALAAYYFGS--EEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLF 484 (693)
Q Consensus 407 ~~iLl~Gp~GtGKt~lA~~la~~l~~~--~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~i 484 (693)
.+++|+||+|+|||++++++++.+... +..++.+++.++.... ...+ . ......+.+.++. ..+|+|
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~-~~~~-~-------~~~~~~~~~~~~~--~dlLii 205 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDF-VNAL-R-------NNKMEEFKEKYRS--VDLLLI 205 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHH-HHHH-H-------cCCHHHHHHHHHh--CCEEEE
Confidence 359999999999999999999988543 4567777776654321 1001 0 0011223344443 359999
Q ss_pred ccCcccCH--HHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHH
Q 005511 485 DEIEKAHP--DVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTE 562 (693)
Q Consensus 485 DEid~l~~--~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~ 562 (693)
||++.+.. ..+..|+.+++.-. ..+..+|+++|..+..+..
T Consensus 206 DDi~~l~~~~~~~~~l~~~~n~~~----------~~~~~iiits~~~p~~l~~--------------------------- 248 (405)
T TIGR00362 206 DDIQFLAGKERTQEEFFHTFNALH----------ENGKQIVLTSDRPPKELPG--------------------------- 248 (405)
T ss_pred ehhhhhcCCHHHHHHHHHHHHHHH----------HCCCCEEEecCCCHHHHhh---------------------------
Confidence 99998854 35666777665311 0122467777755542211
Q ss_pred HHhhcCchhHhhccCc--EEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHH
Q 005511 563 ELKQYFRPEFLNRLDE--MIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAI 640 (693)
Q Consensus 563 ~l~~~~~~~l~~R~~~--~v~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i 640 (693)
+.+.+.+||.. .+.|.+|+.+++..|++..+... + +.++++++++|++. +..+ .|.|..++
T Consensus 249 -----l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~-------~--~~l~~e~l~~ia~~-~~~~--~r~l~~~l 311 (405)
T TIGR00362 249 -----LEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEE-------G--LELPDEVLEFIAKN-IRSN--VRELEGAL 311 (405)
T ss_pred -----hhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHc-------C--CCCCHHHHHHHHHh-cCCC--HHHHHHHH
Confidence 56789999954 79999999999999998776541 3 45899999999974 5555 88888888
Q ss_pred HHHHH
Q 005511 641 MRLLE 645 (693)
Q Consensus 641 ~~~i~ 645 (693)
.++..
T Consensus 312 ~~l~~ 316 (405)
T TIGR00362 312 NRLLA 316 (405)
T ss_pred HHHHH
Confidence 86654
No 346
>PRK04132 replication factor C small subunit; Provisional
Probab=99.31 E-value=2.4e-11 Score=137.47 Aligned_cols=162 Identities=16% Similarity=0.223 Sum_probs=127.4
Q ss_pred CeEEEC--CCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCcccchHHHHHHHHHHHHHhC------CCe
Q 005511 65 NPCLIG--EPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQS------DEI 136 (693)
Q Consensus 65 ~vLl~G--p~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~------~~~ 136 (693)
+-+..| |++.||||+|+++|+.+.... .+.+++++++++... ...++.++..+... +..
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~-----~~~~~lElNASd~rg--------id~IR~iIk~~a~~~~~~~~~~K 632 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGEN-----WRHNFLELNASDERG--------INVIREKVKEFARTKPIGGASFK 632 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhccc-----ccCeEEEEeCCCccc--------HHHHHHHHHHHHhcCCcCCCCCE
Confidence 456779 999999999999999984321 145789999876421 12345544443221 236
Q ss_pred EEEEeccchhhhCCCCCChHhHHHHHhhhhcC--CCcEEEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHH
Q 005511 137 ILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILK 214 (693)
Q Consensus 137 vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~ 214 (693)
|++|||+|.|. .++++.|++.++. +.+.+|++||.+. .+.++++|||..+.|++|+.++....++
T Consensus 633 VvIIDEaD~Lt--------~~AQnALLk~lEep~~~~~FILi~N~~~-----kIi~tIrSRC~~i~F~~ls~~~i~~~L~ 699 (846)
T PRK04132 633 IIFLDEADALT--------QDAQQALRRTMEMFSSNVRFILSCNYSS-----KIIEPIQSRCAIFRFRPLRDEDIAKRLR 699 (846)
T ss_pred EEEEECcccCC--------HHHHHHHHHHhhCCCCCeEEEEEeCChh-----hCchHHhhhceEEeCCCCCHHHHHHHHH
Confidence 99999999995 3489999999994 7789999999887 6889999999999999999999999998
Q ss_pred HHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhhhhHHHHHhh
Q 005511 215 GLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGS 262 (693)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~a~~ 262 (693)
.++++ .++.++++++..++..++|.+ +.++++|+.++.
T Consensus 700 ~I~~~----Egi~i~~e~L~~Ia~~s~GDl------R~AIn~Lq~~~~ 737 (846)
T PRK04132 700 YIAEN----EGLELTEEGLQAILYIAEGDM------RRAINILQAAAA 737 (846)
T ss_pred HHHHh----cCCCCCHHHHHHHHHHcCCCH------HHHHHHHHHHHH
Confidence 88764 567889999999999998864 788888887653
No 347
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.31 E-value=3.6e-11 Score=129.04 Aligned_cols=173 Identities=17% Similarity=0.280 Sum_probs=116.7
Q ss_pred eEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCCcCcCccchhhHHHHcCCCEEEEEcc
Q 005511 407 ASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDE 486 (693)
Q Consensus 407 ~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDE 486 (693)
.+++|+||+|+|||++++++++.+...+..++.+...++.... ...+ .. + ....+....+ ...+|+|||
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~-~~~l-~~-----~--~~~~f~~~~~--~~dvLiIDD 210 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHL-VSAI-RS-----G--EMQRFRQFYR--NVDALFIED 210 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHH-HHHH-hc-----c--hHHHHHHHcc--cCCEEEEcc
Confidence 4599999999999999999999886556677777765554221 0000 00 0 0011222222 335999999
Q ss_pred CcccCH--HHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHH
Q 005511 487 IEKAHP--DVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEEL 564 (693)
Q Consensus 487 id~l~~--~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l 564 (693)
++.+.. ..+..|+.++..-. ..+..+|+|||..+..+.
T Consensus 211 iq~l~~k~~~qeelf~l~N~l~----------~~~k~IIlts~~~p~~l~------------------------------ 250 (445)
T PRK12422 211 IEVFSGKGATQEEFFHTFNSLH----------TEGKLIVISSTCAPQDLK------------------------------ 250 (445)
T ss_pred hhhhcCChhhHHHHHHHHHHHH----------HCCCcEEEecCCCHHHHh------------------------------
Confidence 999854 46677776664310 012357778775543221
Q ss_pred hhcCchhHhhccC--cEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHH
Q 005511 565 KQYFRPEFLNRLD--EMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMR 642 (693)
Q Consensus 565 ~~~~~~~l~~R~~--~~v~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~ 642 (693)
.+.+.|.+||. ..+.+.+|+.+++..|+++.+... + +.++++++++|+.. +..+ +|.|..++..
T Consensus 251 --~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~-------~--~~l~~evl~~la~~-~~~d--ir~L~g~l~~ 316 (445)
T PRK12422 251 --AMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEAL-------S--IRIEETALDFLIEA-LSSN--VKSLLHALTL 316 (445)
T ss_pred --hhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHc-------C--CCCCHHHHHHHHHh-cCCC--HHHHHHHHHH
Confidence 16789999995 689999999999999998766541 3 56999999999984 5544 8999998887
Q ss_pred HH
Q 005511 643 LL 644 (693)
Q Consensus 643 ~i 644 (693)
+.
T Consensus 317 l~ 318 (445)
T PRK12422 317 LA 318 (445)
T ss_pred HH
Confidence 74
No 348
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.31 E-value=2.2e-11 Score=112.83 Aligned_cols=142 Identities=18% Similarity=0.218 Sum_probs=96.6
Q ss_pred CCHHHHHHHHHHHhcCCCCC-eEEECCCCChHHHHHHHHHHHHhcCCCCC-------------CCCCceEEEEecccccc
Q 005511 46 GRQPQIERVVQILGRRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDVPD-------------TIEGKKVITLDMGLLVA 111 (693)
Q Consensus 46 G~~~~~~~l~~~l~~~~~~~-vLl~Gp~GtGKT~la~~la~~l~~~~~~~-------------~~~~~~~~~~~~~~l~~ 111 (693)
||+++++.|...+.....+| +||+||+|+||+++|..+|+.+.+..... ......++.++......
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 89999999999999888777 58999999999999999999997643321 01234455554332210
Q ss_pred CCcccchHHHHHHHHHHHHH----hCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCC--CcEEEEEechHHHHhh
Q 005511 112 GTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG--ELQCIGATTLDEYRKH 185 (693)
Q Consensus 112 ~~~~~g~~~~~l~~~~~~~~----~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~--~v~vI~~t~~~~~~~~ 185 (693)
.-..+.++.+...+. .+...|++|||+|.|. .+++++|++.||.. .+.+|++|+.+.
T Consensus 81 -----~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~--------~~a~NaLLK~LEepp~~~~fiL~t~~~~---- 143 (162)
T PF13177_consen 81 -----SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT--------EEAQNALLKTLEEPPENTYFILITNNPS---- 143 (162)
T ss_dssp -----SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS---------HHHHHHHHHHHHSTTTTEEEEEEES-GG----
T ss_pred -----hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh--------HHHHHHHHHHhcCCCCCEEEEEEECChH----
Confidence 112344556555543 2346799999999994 45899999999854 688888888776
Q ss_pred hhcCHHHhccCCccccCCCC
Q 005511 186 IEKDPALERRFQPVKVPEPS 205 (693)
Q Consensus 186 ~~l~~~l~~Rf~~i~~~~p~ 205 (693)
.+-+.++||+..+.|++++
T Consensus 144 -~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 144 -KILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp -GS-HHHHTTSEEEEE----
T ss_pred -HChHHHHhhceEEecCCCC
Confidence 7899999999999888764
No 349
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.30 E-value=3.7e-11 Score=126.10 Aligned_cols=152 Identities=25% Similarity=0.286 Sum_probs=110.2
Q ss_pred CCccCCHHHHHHHHHHHh-cCCCCC-eEEECCCCChHHHHHHHHHHHHhcCCCCCCC--------------CCceEEEEe
Q 005511 42 DPVVGRQPQIERVVQILG-RRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDVPDTI--------------EGKKVITLD 105 (693)
Q Consensus 42 ~~iiG~~~~~~~l~~~l~-~~~~~~-vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~--------------~~~~~~~~~ 105 (693)
++++|.++.+.++..+.. ....+| +||+||||+|||++|.++|+.+.+....... ....++.++
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~ 80 (325)
T COG0470 1 DELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN 80 (325)
T ss_pred CCcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec
Confidence 357888888888888777 444677 9999999999999999999999764321111 234677777
Q ss_pred ccccccCCcccchHHHHHHHHHHHHHh----CCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC--CCcEEEEEech
Q 005511 106 MGLLVAGTKYRGEFEERLKKLMEEIKQ----SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--GELQCIGATTL 179 (693)
Q Consensus 106 ~~~l~~~~~~~g~~~~~l~~~~~~~~~----~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~~t~~ 179 (693)
.+..... ......++.+...... ++..|++|||+|.|.. ++.++++..++. ....+|.+||.
T Consensus 81 ~s~~~~~----~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~--------~A~nallk~lEep~~~~~~il~~n~ 148 (325)
T COG0470 81 PSDLRKI----DIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE--------DAANALLKTLEEPPKNTRFILITND 148 (325)
T ss_pred ccccCCC----cchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH--------HHHHHHHHHhccCCCCeEEEEEcCC
Confidence 6654321 1234555555555432 3467999999999954 588999999884 45788999996
Q ss_pred HHHHhhhhcCHHHhccCCccccCCCCHHHHH
Q 005511 180 DEYRKHIEKDPALERRFQPVKVPEPSVDETI 210 (693)
Q Consensus 180 ~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~ 210 (693)
+. .+-+.+++|+..+.|++|+.....
T Consensus 149 ~~-----~il~tI~SRc~~i~f~~~~~~~~i 174 (325)
T COG0470 149 PS-----KILPTIRSRCQRIRFKPPSRLEAI 174 (325)
T ss_pred hh-----hccchhhhcceeeecCCchHHHHH
Confidence 65 678899999999999985554443
No 350
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.30 E-value=2.1e-12 Score=121.04 Aligned_cols=130 Identities=22% Similarity=0.309 Sum_probs=73.3
Q ss_pred CCCCccCCHHHHHHHHHHHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEec----cccccCCcc
Q 005511 40 KLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM----GLLVAGTKY 115 (693)
Q Consensus 40 ~~~~iiG~~~~~~~l~~~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~----~~l~~~~~~ 115 (693)
+|.+++||+..++.+.-.... ..|+||+||||||||++|+.+...|..-...+.+.-..++.+.. ..+....++
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG--~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~~~~~~Pf 78 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAG--GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEGLIRQRPF 78 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHC--C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---EEEE---E
T ss_pred ChhhhcCcHHHHHHHHHHHcC--CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCceecCCCc
Confidence 488999999999998877664 58999999999999999999998775422111111111111100 000000000
Q ss_pred c----chHHHHHHHHH--------HHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCC-------------
Q 005511 116 R----GEFEERLKKLM--------EEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGE------------- 170 (693)
Q Consensus 116 ~----g~~~~~l~~~~--------~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~------------- 170 (693)
+ ..+ ...++ ..+......|||+||+..+. ..+.+.|++.++.+.
T Consensus 79 r~phhs~s---~~~liGgg~~~~PGeislAh~GVLflDE~~ef~--------~~vld~Lr~ple~g~v~i~R~~~~~~~P 147 (206)
T PF01078_consen 79 RAPHHSAS---EAALIGGGRPPRPGEISLAHRGVLFLDELNEFD--------RSVLDALRQPLEDGEVTISRAGGSVTYP 147 (206)
T ss_dssp EEE-TT-----HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS---------HHHHHHHHHHHHHSBEEEEETTEEEEEB
T ss_pred ccCCCCcC---HHHHhCCCcCCCcCHHHHhcCCEEEechhhhcC--------HHHHHHHHHHHHCCeEEEEECCceEEEe
Confidence 0 001 11122 12234456799999999884 458999999998654
Q ss_pred --cEEEEEechHHH
Q 005511 171 --LQCIGATTLDEY 182 (693)
Q Consensus 171 --v~vI~~t~~~~~ 182 (693)
+.+|+|+|+-+.
T Consensus 148 a~f~lv~a~NPcpC 161 (206)
T PF01078_consen 148 ARFLLVAAMNPCPC 161 (206)
T ss_dssp --EEEEEEE-S---
T ss_pred cccEEEEEeccccc
Confidence 688999987543
No 351
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.29 E-value=8.4e-11 Score=132.56 Aligned_cols=162 Identities=25% Similarity=0.342 Sum_probs=103.6
Q ss_pred CCCccCCHHHHHHHHHHHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCC---------CCCC----------------
Q 005511 41 LDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGD---------VPDT---------------- 95 (693)
Q Consensus 41 ~~~iiG~~~~~~~l~~~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~---------~~~~---------------- 95 (693)
|..|+||+..+..+...+-.+...++||.|++|||||++|+++++.+..-. .|+.
T Consensus 3 f~~ivGq~~~~~al~~~av~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~ 82 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSE 82 (633)
T ss_pred cchhcChHHHHHHHHHHhhCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccc
Confidence 778999999999887777766667899999999999999999998873100 0000
Q ss_pred CCCceEEEEeccccccCCcccch--HHHHHHH-----HHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC
Q 005511 96 IEGKKVITLDMGLLVAGTKYRGE--FEERLKK-----LMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR 168 (693)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~~~~g~--~~~~l~~-----~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~ 168 (693)
....+++.+.++.... ...|. ....+.. --..+......+|||||++.+.+ ..++.|...++.
T Consensus 83 ~~~~pfv~~p~~~t~~--~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~--------~~q~~Ll~~le~ 152 (633)
T TIGR02442 83 QRPVPFVNLPLGATED--RVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDD--------HLVDVLLDAAAM 152 (633)
T ss_pred cCCCCeeeCCCCCcHH--HcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCH--------HHHHHHHHHHhc
Confidence 0123344433321110 00010 0111100 00111233456999999999954 478888888875
Q ss_pred C---------------CcEEEEEechHHHHhhhhcCHHHhccCC-ccccCCCC-HHHHHHHHHHH
Q 005511 169 G---------------ELQCIGATTLDEYRKHIEKDPALERRFQ-PVKVPEPS-VDETIQILKGL 216 (693)
Q Consensus 169 ~---------------~v~vI~~t~~~~~~~~~~l~~~l~~Rf~-~i~~~~p~-~~e~~~il~~~ 216 (693)
+ .+.+|+++|+.+. .+.++|..||. .|.++.+. .+++.++++..
T Consensus 153 g~~~v~r~g~~~~~~~~~~lIat~np~eg----~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~ 213 (633)
T TIGR02442 153 GVNRVEREGLSVSHPARFVLIGTMNPEEG----DLRPQLLDRFGLCVDVAAPRDPEERVEIIRRR 213 (633)
T ss_pred CCEEEEECCceeeecCCeEEEEecCCCCC----CCCHHHHhhcceEEEccCCCchHHHHHHHHHH
Confidence 5 2788888886431 47899999998 77787775 46777777653
No 352
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.28 E-value=3.2e-11 Score=117.62 Aligned_cols=173 Identities=20% Similarity=0.295 Sum_probs=112.2
Q ss_pred EEEEeccCCCcHHHHHHHHHHHhcC--CCcceeeeccccccchhhhhhhcCCCCCCcCcCccchhhHHHHcCCCEEEEEc
Q 005511 408 SFIFSGPTGVGKSELAKALAAYYFG--SEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFD 485 (693)
Q Consensus 408 ~iLl~Gp~GtGKt~lA~~la~~l~~--~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iD 485 (693)
.++++||+|+|||.|.+++++.+.. .+..++.++..++....... + -......+.+.++... +|+||
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~-~--------~~~~~~~~~~~~~~~D--lL~iD 104 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADA-L--------RDGEIEEFKDRLRSAD--LLIID 104 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHH-H--------HTTSHHHHHHHHCTSS--EEEEE
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHH-H--------HcccchhhhhhhhcCC--EEEEe
Confidence 5899999999999999999988732 35667778777765431110 0 0011123444455444 99999
Q ss_pred cCcccCHH--HHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHH
Q 005511 486 EIEKAHPD--VFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEE 563 (693)
Q Consensus 486 Eid~l~~~--~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~ 563 (693)
+++.+... .+..|..+++.-. ..+..+|+|++..+..+.
T Consensus 105 Di~~l~~~~~~q~~lf~l~n~~~----------~~~k~li~ts~~~P~~l~----------------------------- 145 (219)
T PF00308_consen 105 DIQFLAGKQRTQEELFHLFNRLI----------ESGKQLILTSDRPPSELS----------------------------- 145 (219)
T ss_dssp TGGGGTTHHHHHHHHHHHHHHHH----------HTTSEEEEEESS-TTTTT-----------------------------
T ss_pred cchhhcCchHHHHHHHHHHHHHH----------hhCCeEEEEeCCCCcccc-----------------------------
Confidence 99999654 5788888776521 113357777765544221
Q ss_pred HhhcCchhHhhccCc--EEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHH
Q 005511 564 LKQYFRPEFLNRLDE--MIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIM 641 (693)
Q Consensus 564 l~~~~~~~l~~R~~~--~v~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~ 641 (693)
.+.|.|.+||.. ++.+.+|+.+++.+|+.+..... + +.+++++.++|++. ++.+ .|.|...+.
T Consensus 146 ---~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~-------~--~~l~~~v~~~l~~~-~~~~--~r~L~~~l~ 210 (219)
T PF00308_consen 146 ---GLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKER-------G--IELPEEVIEYLARR-FRRD--VRELEGALN 210 (219)
T ss_dssp ---TS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHT-------T----S-HHHHHHHHHH-TTSS--HHHHHHHHH
T ss_pred ---ccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHh-------C--CCCcHHHHHHHHHh-hcCC--HHHHHHHHH
Confidence 167899999944 68999999999999998776532 3 44999999999985 5555 888888888
Q ss_pred HHHH
Q 005511 642 RLLE 645 (693)
Q Consensus 642 ~~i~ 645 (693)
++..
T Consensus 211 ~l~~ 214 (219)
T PF00308_consen 211 RLDA 214 (219)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
No 353
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.27 E-value=1.1e-10 Score=120.39 Aligned_cols=162 Identities=20% Similarity=0.240 Sum_probs=108.5
Q ss_pred HHHhcCC-CCCeEEECCCCChHHHHHHHHHHHHhcCCCCC--------------CCCCceEEEEeccccccCCcccchHH
Q 005511 56 QILGRRT-KNNPCLIGEPGVGKTAIAEGLAQRIASGDVPD--------------TIEGKKVITLDMGLLVAGTKYRGEFE 120 (693)
Q Consensus 56 ~~l~~~~-~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~--------------~~~~~~~~~~~~~~l~~~~~~~g~~~ 120 (693)
+++.... ++.+||+||+|+|||++|+.+|+.+.+..... ...+..++.+....- . .....
T Consensus 14 ~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~---~--~~i~i 88 (328)
T PRK05707 14 QLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA---D--KTIKV 88 (328)
T ss_pred HHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC---C--CCCCH
Confidence 3333344 44578999999999999999999998742110 011223444432110 0 01123
Q ss_pred HHHHHHHHHHH----hCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC--CCcEEEEEechHHHHhhhhcCHHHhc
Q 005511 121 ERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--GELQCIGATTLDEYRKHIEKDPALER 194 (693)
Q Consensus 121 ~~l~~~~~~~~----~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~~t~~~~~~~~~~l~~~l~~ 194 (693)
+.++.+...+. .+...|++||++|.|.. ...|.|++.+|. +...+|.+|+.+. .+.|.++|
T Consensus 89 d~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~--------~aaNaLLK~LEEPp~~~~fiL~t~~~~-----~ll~TI~S 155 (328)
T PRK05707 89 DQVRELVSFVVQTAQLGGRKVVLIEPAEAMNR--------NAANALLKSLEEPSGDTVLLLISHQPS-----RLLPTIKS 155 (328)
T ss_pred HHHHHHHHHHhhccccCCCeEEEECChhhCCH--------HHHHHHHHHHhCCCCCeEEEEEECChh-----hCcHHHHh
Confidence 45566555553 34466899999999954 478999999986 5678888888877 68999999
Q ss_pred cCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhh
Q 005511 195 RFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQY 243 (693)
Q Consensus 195 Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 243 (693)
|+..+.|++|+.++..+.+..... ..+++....++.++.|.
T Consensus 156 Rc~~~~~~~~~~~~~~~~L~~~~~--------~~~~~~~~~~l~la~Gs 196 (328)
T PRK05707 156 RCQQQACPLPSNEESLQWLQQALP--------ESDERERIELLTLAGGS 196 (328)
T ss_pred hceeeeCCCcCHHHHHHHHHHhcc--------cCChHHHHHHHHHcCCC
Confidence 999999999999988887763321 22444555566666554
No 354
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.27 E-value=5.3e-11 Score=129.69 Aligned_cols=174 Identities=16% Similarity=0.242 Sum_probs=116.1
Q ss_pred eEEEEeccCCCcHHHHHHHHHHHhcCC--CcceeeeccccccchhhhhhhcCCCCCCcCcCccchhhHHHHcCCCEEEEE
Q 005511 407 ASFIFSGPTGVGKSELAKALAAYYFGS--EEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLF 484 (693)
Q Consensus 407 ~~iLl~Gp~GtGKt~lA~~la~~l~~~--~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~i 484 (693)
.+++|+||||||||++++++++.+... +..++.+++.++.... ...+ . ......+.+.++. ..+|+|
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~-~~~~-~-------~~~~~~~~~~~~~--~dlLii 217 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDF-VNAL-R-------NNTMEEFKEKYRS--VDVLLI 217 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH-HHHH-H-------cCcHHHHHHHHhc--CCEEEE
Confidence 359999999999999999999998543 4557777776664321 1101 0 0011233344443 359999
Q ss_pred ccCcccCH--HHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHH
Q 005511 485 DEIEKAHP--DVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTE 562 (693)
Q Consensus 485 DEid~l~~--~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~ 562 (693)
||++.+.. ..+..|+.+++.-. ..+..+|+++|..+..+..
T Consensus 218 DDi~~l~~~~~~~~~l~~~~n~l~----------~~~~~iiits~~~p~~l~~--------------------------- 260 (450)
T PRK00149 218 DDIQFLAGKERTQEEFFHTFNALH----------EAGKQIVLTSDRPPKELPG--------------------------- 260 (450)
T ss_pred ehhhhhcCCHHHHHHHHHHHHHHH----------HCCCcEEEECCCCHHHHHH---------------------------
Confidence 99998843 35666666664311 0112366777755432211
Q ss_pred HHhhcCchhHhhccC--cEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHH
Q 005511 563 ELKQYFRPEFLNRLD--EMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAI 640 (693)
Q Consensus 563 ~l~~~~~~~l~~R~~--~~v~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i 640 (693)
+.+.+.+||. .++.+.+|+.+++..|++..+... + +.++++++++|++. +..+ +|.|..++
T Consensus 261 -----l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~-------~--~~l~~e~l~~ia~~-~~~~--~R~l~~~l 323 (450)
T PRK00149 261 -----LEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEE-------G--IDLPDEVLEFIAKN-ITSN--VRELEGAL 323 (450)
T ss_pred -----HHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHc-------C--CCCCHHHHHHHHcC-cCCC--HHHHHHHH
Confidence 5688999995 479999999999999998877631 2 45999999999985 5444 88888888
Q ss_pred HHHHH
Q 005511 641 MRLLE 645 (693)
Q Consensus 641 ~~~i~ 645 (693)
.++..
T Consensus 324 ~~l~~ 328 (450)
T PRK00149 324 NRLIA 328 (450)
T ss_pred HHHHH
Confidence 76643
No 355
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.27 E-value=1.5e-10 Score=119.53 Aligned_cols=169 Identities=16% Similarity=0.153 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHhcCCCCC-eEEECCCCChHHHHHHHHHHHHhcCCCCC--------------CCCCceEEEEeccccccC
Q 005511 48 QPQIERVVQILGRRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDVPD--------------TIEGKKVITLDMGLLVAG 112 (693)
Q Consensus 48 ~~~~~~l~~~l~~~~~~~-vLl~Gp~GtGKT~la~~la~~l~~~~~~~--------------~~~~~~~~~~~~~~l~~~ 112 (693)
+..-+++.+.+...+.+| +||+||+|+||+++|.++|+.+.+..... ...+..+..+....-
T Consensus 8 ~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~--- 84 (334)
T PRK07993 8 RPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG--- 84 (334)
T ss_pred hHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc---
Confidence 345567778777755555 56899999999999999999997742111 112334444432110
Q ss_pred CcccchHHHHHHHHHHHHH----hCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC--CCcEEEEEechHHHHhhh
Q 005511 113 TKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--GELQCIGATTLDEYRKHI 186 (693)
Q Consensus 113 ~~~~g~~~~~l~~~~~~~~----~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~~t~~~~~~~~~ 186 (693)
. ..-..+.++.+...+. .+...|++||++|.|.. .+.|.|++.||. ....+|.+|+.++
T Consensus 85 ~--~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~--------~AaNaLLKtLEEPp~~t~fiL~t~~~~----- 149 (334)
T PRK07993 85 K--SSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTD--------AAANALLKTLEEPPENTWFFLACREPA----- 149 (334)
T ss_pred c--ccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCH--------HHHHHHHHHhcCCCCCeEEEEEECChh-----
Confidence 0 0122344555555543 34567999999999954 489999999984 4577888888776
Q ss_pred hcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhh
Q 005511 187 EKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQY 243 (693)
Q Consensus 187 ~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 243 (693)
.+.|.++||++.+.|++|+.++..+.|... ..++++....++.++.|.
T Consensus 150 ~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~---------~~~~~~~a~~~~~la~G~ 197 (334)
T PRK07993 150 RLLATLRSRCRLHYLAPPPEQYALTWLSRE---------VTMSQDALLAALRLSAGA 197 (334)
T ss_pred hChHHHHhccccccCCCCCHHHHHHHHHHc---------cCCCHHHHHHHHHHcCCC
Confidence 789999999999999999998887776521 234556566677777664
No 356
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.26 E-value=5.7e-11 Score=108.77 Aligned_cols=150 Identities=28% Similarity=0.387 Sum_probs=97.7
Q ss_pred ChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCC
Q 005511 380 GQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPP 459 (693)
Q Consensus 380 g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 459 (693)
|++..+..+...+... +..+++++||||||||++++.+++.+...+.+++.+++.+...........+..
T Consensus 2 ~~~~~~~~i~~~~~~~---------~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 2 GQEEAIEALREALELP---------PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred chHHHHHHHHHHHhCC---------CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 4556666665555431 113699999999999999999999986667788888887765432221111100
Q ss_pred CCcCcCccchhhHHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhcccc
Q 005511 460 GYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRR 539 (693)
Q Consensus 460 ~~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~ 539 (693)
.............+++|++||++.+++.....++..++...... ....++.+|+++|....
T Consensus 72 ------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~ii~~~~~~~~-------- 132 (151)
T cd00009 72 ------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR-----IDRENVRVIGATNRPLL-------- 132 (151)
T ss_pred ------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCcee-----ccCCCeEEEEecCcccc--------
Confidence 00111122333557899999999998888889999887743210 11346788888885431
Q ss_pred cccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCC
Q 005511 540 IGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQ 584 (693)
Q Consensus 540 ~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~ 584 (693)
..+.+.+.+||+..+.++|
T Consensus 133 --------------------------~~~~~~~~~r~~~~i~~~~ 151 (151)
T cd00009 133 --------------------------GDLDRALYDRLDIRIVIPL 151 (151)
T ss_pred --------------------------CCcChhHHhhhccEeecCC
Confidence 0167889999987777764
No 357
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=99.26 E-value=3.6e-10 Score=127.83 Aligned_cols=456 Identities=15% Similarity=0.108 Sum_probs=231.6
Q ss_pred CCCCCeEEECCCCChHHHHHHH-HHHHHhcCCCCCCCCCceEEEEeccccccCCcccchHHHHHHHHHHHH---Hh----
Q 005511 61 RTKNNPCLIGEPGVGKTAIAEG-LAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEI---KQ---- 132 (693)
Q Consensus 61 ~~~~~vLl~Gp~GtGKT~la~~-la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~---~~---- 132 (693)
.+.++++++||||+|||++..- +-.++ ..+++.++.+.-... +..+..+-+.. ..
T Consensus 1492 nt~R~~i~cGppGSgK~mlM~~sLrs~~----------~~ev~~~Nfs~~t~T-------~s~ls~Ler~t~yy~~tg~~ 1554 (3164)
T COG5245 1492 NTLRSYIYCGPPGSGKEMLMCPSLRSEL----------ITEVKYFNFSTCTMT-------PSKLSVLERETEYYPNTGVV 1554 (3164)
T ss_pred hccceEEEECCCCCccchhcchhhhhhh----------heeeeEEeeccccCC-------HHHHHHHHhhceeeccCCeE
Confidence 3568999999999999997533 22222 567778876543211 11122111111 11
Q ss_pred -------CCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCC--------------CcEEEEEechHHHHhhhhcCHH
Q 005511 133 -------SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG--------------ELQCIGATTLDEYRKHIEKDPA 191 (693)
Q Consensus 133 -------~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~--------------~v~vI~~t~~~~~~~~~~l~~~ 191 (693)
-...|||+|||+ +|.+...+...+.-.|++++++. ++.+++++|++...++......
T Consensus 1555 ~l~PK~~vK~lVLFcDeIn--Lp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eR 1632 (3164)
T COG5245 1555 RLYPKPVVKDLVLFCDEIN--LPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYER 1632 (3164)
T ss_pred EEccCcchhheEEEeeccC--CccccccCCCceEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHH
Confidence 123599999999 56666666666666777777753 3789999999875555555555
Q ss_pred HhccCCccccCCCCHHHHHHHHHHHHHhHh-hhcCc-ccChHHHHHHHHhh----hhhhc-----ccCCchhhhhHHHHH
Q 005511 192 LERRFQPVKVPEPSVDETIQILKGLRERYE-IHHKL-RYTDEALVSAAQLS----YQYIS-----DRFLPDKAIDLIDEA 260 (693)
Q Consensus 192 l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~-~~~~~-~~~~~~l~~l~~~~----~~~~~-----~~~~~~~~~~ll~~a 260 (693)
+.++--.+.+..|....+.+|++.++.... ....+ .++.+...+.+++. ++|-. -.+.|++.-+.++..
T Consensus 1633 f~r~~v~vf~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr~i 1712 (3164)
T COG5245 1633 FIRKPVFVFCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRSLRAI 1712 (3164)
T ss_pred HhcCceEEEecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHHHHHH
Confidence 655555678889999999999998765421 11011 23333332222221 11110 123345555555443
Q ss_pred hhHHHHhhcCCcHH--HHHHHHHHHHHHHHHHHHhcCcchHHHhhhHHHHHHHHHHHHHHHhhhhhhhHhhh--hcCCC-
Q 005511 261 GSRVRLRHAQLPEE--ARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAET--EAGDV- 335 (693)
Q Consensus 261 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~- 335 (693)
-..+..+. ..+.. +.. =..++.+....++...+...+.+...+.-....-. ..+.+
T Consensus 1713 ~~yaeT~~-~t~~~slI~~------------------wy~ea~r~~~dRLV~qkE~st~~q~ly~~~~~~~~e~~~g~i~ 1773 (3164)
T COG5245 1713 FGYAETRI-DTPDVSLIID------------------WYCEAIREKIDRLVQQKESSTSRQDLYDFGLRAIREMIAGHIG 1773 (3164)
T ss_pred HhHHhcCC-CCCcHHHHHH------------------HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhhhhhcccc
Confidence 33222211 11110 000 01122233333333333332222222211111110 00000
Q ss_pred CCccCHhHHHHHHHHHhCCCccCCCcch-hHHHHHHHHH-----HhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEE
Q 005511 336 GPVVTEVDIQHIVSAWTGIPVEKVSTDE-SDRLLKMEET-----LHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASF 409 (693)
Q Consensus 336 ~~~v~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~i 409 (693)
...++..++- .....-+...+ ...+.+..+. +....+-.++++.++.+.-+.... ..+|.
T Consensus 1774 e~~I~fS~Il-------~~g~~~l~k~dl~~fvEe~~K~F~sshl~v~~V~~~~~l~HiLr~~R~l~~-------vggh~ 1839 (3164)
T COG5245 1774 EAEITFSMIL-------FFGMACLLKKDLAVFVEEVRKIFGSSHLDVEAVAYKDALLHILRSRRGLLV-------VGGHG 1839 (3164)
T ss_pred hhhhhHHHHH-------hccHHHHhhhhHHHHHHHHHHHhcccCCCCceeeeHHHHHHHHHHHHHHHH-------hccch
Confidence 1112222211 11111111111 1112222222 233456667776666554443321 12479
Q ss_pred EEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCCcCcCccchhhH-HHH---cCCCEEEEEc
Q 005511 410 IFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTE-AVR---RRPYTVVLFD 485 (693)
Q Consensus 410 Ll~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~-~~~---~~~~~vl~iD 485 (693)
++.|..|+||+-+.+.++++- +.+++.+. |+.....|.-+ ..++. .++ .....++|||
T Consensus 1840 ~l~g~~~~g~~~~~efvcwlN---~~~m~e~~--------------~hr~~~~~Df~-d~lk~~~~~~~~~~~r~Cl~I~ 1901 (3164)
T COG5245 1840 VLKGVLIRGACDAREFVCWLN---PRNMREIF--------------GHRDELTGDFR-DSLKVQDLRRNIHGGRECLFIF 1901 (3164)
T ss_pred hhhhhhhhhhHHHHHHHHHhC---ccchhhhh--------------cccccchhhHH-HHHHHHHHhccccCCceEEEEe
Confidence 999999999999999999653 33333222 22111122111 11111 111 2335689999
Q ss_pred cCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhccccccc-ccCcCcccchHHHHHHHHHHHH
Q 005511 486 EIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGF-DLDYDEKDSSYNRIKSLVTEEL 564 (693)
Q Consensus 486 Eid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f-~~~~~~~~~~~~~l~~~~~~~l 564 (693)
|-.-.-+..++.+..+|++.++. .++..|....+.+....-..+ ....++++..+..+-.-+.+++
T Consensus 1902 Esi~~es~fLe~~N~LL~n~~~~-------------~lf~gne~~~I~~nlr~~~es~~L~~dTe~tlt~vFl~~~~~Nl 1968 (3164)
T COG5245 1902 ESIPVESSFLEDFNPLLDNNRFL-------------CLFSGNERIRIPENLRFVFESTSLEKDTEATLTRVFLVYMEENL 1968 (3164)
T ss_pred cCCccchHHHHHhhhhhhccccc-------------hhccchhHHHHHHHHHhhhhccccccCCHHHHHHHHHHHHHhcC
Confidence 99889999999999999986654 444555444433322211111 1223444444544444455554
Q ss_pred hhc---------------CchhHhhccCcEEEcCCCCHHHHHHHHHHHHHH
Q 005511 565 KQY---------------FRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKE 600 (693)
Q Consensus 565 ~~~---------------~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l~~ 600 (693)
... ..|++.+|| .+-....++.+++.++++..+..
T Consensus 1969 ~vVFs~c~s~d~~~~a~i~spal~nrc-~id~~~~wdt~~msq~An~V~~~ 2018 (3164)
T COG5245 1969 PVVFSACCSQDTSVLAGIRSPALKNRC-FIDFKKLWDTEEMSQYANSVETL 2018 (3164)
T ss_pred CeEEEEecCCCchHhhccCCHHHhhhh-hhhhhhhccHHHHHHHHhhhhhe
Confidence 432 369999998 55577788999999999876653
No 358
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.26 E-value=5.4e-11 Score=124.23 Aligned_cols=152 Identities=26% Similarity=0.314 Sum_probs=107.3
Q ss_pred CccCCHHHHHHHHHHHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCcccchHHHH
Q 005511 43 PVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEER 122 (693)
Q Consensus 43 ~iiG~~~~~~~l~~~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 122 (693)
.++|+++++..+...+.. ..++||.||||||||++|+.+|+.+ +.+++.+.+..........|.....
T Consensus 25 ~~~g~~~~~~~~l~a~~~--~~~vll~G~PG~gKT~la~~lA~~l----------~~~~~~i~~t~~l~p~d~~G~~~~~ 92 (329)
T COG0714 25 VVVGDEEVIELALLALLA--GGHVLLEGPPGVGKTLLARALARAL----------GLPFVRIQCTPDLLPSDLLGTYAYA 92 (329)
T ss_pred eeeccHHHHHHHHHHHHc--CCCEEEECCCCccHHHHHHHHHHHh----------CCCeEEEecCCCCCHHHhcCchhHh
Confidence 489999888887776653 5899999999999999999999999 7788888887655444434433222
Q ss_pred HHHH-HH--HHHhC---CC--eEEEEeccchhhhCCCCCChHhHHHHHhhhhcC--------------CCcEEEEEechH
Q 005511 123 LKKL-ME--EIKQS---DE--IILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--------------GELQCIGATTLD 180 (693)
Q Consensus 123 l~~~-~~--~~~~~---~~--~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--------------~~v~vI~~t~~~ 180 (693)
.... .. ....+ .. +++++|||++..+ +++++|+..++. ..+.+|+++|+.
T Consensus 93 ~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p--------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~ 164 (329)
T COG0714 93 ALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPP--------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPG 164 (329)
T ss_pred hhhccCCeEEEecCCcccccceEEEEeccccCCH--------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCcc
Confidence 2100 00 00000 01 4999999998844 488888888863 346788888987
Q ss_pred HHHhhhhcCHHHhccCC-ccccCCC-CHHHHHHHHH
Q 005511 181 EYRKHIEKDPALERRFQ-PVKVPEP-SVDETIQILK 214 (693)
Q Consensus 181 ~~~~~~~l~~~l~~Rf~-~i~~~~p-~~~e~~~il~ 214 (693)
++.+...+++++++||. .+.++.| +.++...++.
T Consensus 165 e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~ 200 (329)
T COG0714 165 EYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILA 200 (329)
T ss_pred ccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHH
Confidence 77777788999999995 8889999 4444444443
No 359
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.25 E-value=3.2e-10 Score=115.72 Aligned_cols=171 Identities=15% Similarity=0.166 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHhcCCCCC-eEEECCCCChHHHHHHHHHHHHhcCCCCC-----------CCCCceEEEEe--ccccccCC
Q 005511 48 QPQIERVVQILGRRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDVPD-----------TIEGKKVITLD--MGLLVAGT 113 (693)
Q Consensus 48 ~~~~~~l~~~l~~~~~~~-vLl~Gp~GtGKT~la~~la~~l~~~~~~~-----------~~~~~~~~~~~--~~~l~~~~ 113 (693)
+...+++...+.....+| +||+||+|+||+++|.++|+.+.+..... ...+..+..+. ... .+.
T Consensus 10 ~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~--~~~ 87 (319)
T PRK08769 10 QRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNR--TGD 87 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCc--ccc
Confidence 456677888887766666 78999999999999999999998743211 11122344442 111 000
Q ss_pred c-ccchHHHHHHHHHHHHHh----CCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCC--CcEEEEEechHHHHhhh
Q 005511 114 K-YRGEFEERLKKLMEEIKQ----SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG--ELQCIGATTLDEYRKHI 186 (693)
Q Consensus 114 ~-~~g~~~~~l~~~~~~~~~----~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~--~v~vI~~t~~~~~~~~~ 186 (693)
+ ......+.++.+...+.. +...|++||++|.|.. ...|.|++.+|.. .+.+|.+|+.++
T Consensus 88 k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~--------~AaNaLLKtLEEPp~~~~fiL~~~~~~----- 154 (319)
T PRK08769 88 KLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINR--------AACNALLKTLEEPSPGRYLWLISAQPA----- 154 (319)
T ss_pred cccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCH--------HHHHHHHHHhhCCCCCCeEEEEECChh-----
Confidence 0 011234556666665532 3456999999999953 4789999999854 677888888776
Q ss_pred hcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhh
Q 005511 187 EKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQY 243 (693)
Q Consensus 187 ~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 243 (693)
.+.|.++|||..+.|+.|+.++..+.|.. . .+++.....++.++.|.
T Consensus 155 ~lLpTIrSRCq~i~~~~~~~~~~~~~L~~--------~--~~~~~~a~~~~~l~~G~ 201 (319)
T PRK08769 155 RLPATIRSRCQRLEFKLPPAHEALAWLLA--------Q--GVSERAAQEALDAARGH 201 (319)
T ss_pred hCchHHHhhheEeeCCCcCHHHHHHHHHH--------c--CCChHHHHHHHHHcCCC
Confidence 68899999999999999999888777752 1 23444445556666554
No 360
>PHA02244 ATPase-like protein
Probab=99.24 E-value=4.9e-11 Score=121.39 Aligned_cols=143 Identities=21% Similarity=0.222 Sum_probs=91.2
Q ss_pred ccCCHHHHHHHHHHHh--cCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEecc----ccccCCcccc
Q 005511 44 VVGRQPQIERVVQILG--RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMG----LLVAGTKYRG 117 (693)
Q Consensus 44 iiG~~~~~~~l~~~l~--~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g 117 (693)
.+|...........+. .....+++|+||||||||++|+++|+.+ +.+++.++.. .+.......+
T Consensus 98 ~ig~sp~~~~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~l----------g~pfv~In~l~d~~~L~G~i~~~g 167 (383)
T PHA02244 98 KIASNPTFHYETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEAL----------DLDFYFMNAIMDEFELKGFIDANG 167 (383)
T ss_pred ccCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEecChHHHhhcccccccc
Confidence 4666555543332221 1345789999999999999999999987 6677777631 1110001111
Q ss_pred hHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhc-------------CCCcEEEEEechHH--H
Q 005511 118 EFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA-------------RGELQCIGATTLDE--Y 182 (693)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~-------------~~~v~vI~~t~~~~--~ 182 (693)
. +.-..++..+. .+.+|||||++.+.++ ++..|..+++ +.++.+|+++|+.. |
T Consensus 168 ~--~~dgpLl~A~~--~GgvLiLDEId~a~p~--------vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~ 235 (383)
T PHA02244 168 K--FHETPFYEAFK--KGGLFFIDEIDASIPE--------ALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGA 235 (383)
T ss_pred c--ccchHHHHHhh--cCCEEEEeCcCcCCHH--------HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCc
Confidence 1 11123333333 3459999999988543 5666666664 35689999999842 1
Q ss_pred ----HhhhhcCHHHhccCCccccCCCCHHH
Q 005511 183 ----RKHIEKDPALERRFQPVKVPEPSVDE 208 (693)
Q Consensus 183 ----~~~~~l~~~l~~Rf~~i~~~~p~~~e 208 (693)
.+.-.+++++++||..|+|+.|+..|
T Consensus 236 ~~~y~G~k~L~~AllDRFv~I~~dyp~~~E 265 (383)
T PHA02244 236 DHIYVARNKIDGATLDRFAPIEFDYDEKIE 265 (383)
T ss_pred ccccCCCcccCHHHHhhcEEeeCCCCcHHH
Confidence 12236899999999999999998433
No 361
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.24 E-value=1.2e-10 Score=125.38 Aligned_cols=174 Identities=18% Similarity=0.297 Sum_probs=112.6
Q ss_pred EEEEeccCCCcHHHHHHHHHHHhcCC--CcceeeeccccccchhhhhhhcCCCCCCcCcCccchhhHHHHcCCCEEEEEc
Q 005511 408 SFIFSGPTGVGKSELAKALAAYYFGS--EEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFD 485 (693)
Q Consensus 408 ~iLl~Gp~GtGKt~lA~~la~~l~~~--~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iD 485 (693)
+++|+||||||||++++++++.+... +..++.+++.++..... ..+ . ......+....+ ....+|+||
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~-~~~-~-------~~~~~~f~~~~~-~~~dvLlID 201 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLV-DSM-K-------EGKLNEFREKYR-KKVDVLLID 201 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHH-HHH-h-------cccHHHHHHHHH-hcCCEEEEe
Confidence 59999999999999999999987432 34567777766543211 000 0 000112222222 234699999
Q ss_pred cCcccC--HHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHH
Q 005511 486 EIEKAH--PDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEE 563 (693)
Q Consensus 486 Eid~l~--~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~ 563 (693)
|++.+. ...+..|+..+..-. ..+..+|++++..+..+.
T Consensus 202 Di~~l~~~~~~q~elf~~~n~l~----------~~~k~iIitsd~~p~~l~----------------------------- 242 (440)
T PRK14088 202 DVQFLIGKTGVQTELFHTFNELH----------DSGKQIVICSDREPQKLS----------------------------- 242 (440)
T ss_pred chhhhcCcHHHHHHHHHHHHHHH----------HcCCeEEEECCCCHHHHH-----------------------------
Confidence 999874 335566666654311 012246777764443221
Q ss_pred HhhcCchhHhhccC--cEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHH
Q 005511 564 LKQYFRPEFLNRLD--EMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIM 641 (693)
Q Consensus 564 l~~~~~~~l~~R~~--~~v~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~ 641 (693)
.+.+.+.+||. .++.+.||+.+.+..|+++.+.. .+ +.++++++++|++. +..+ +|.|..++.
T Consensus 243 ---~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~-------~~--~~l~~ev~~~Ia~~-~~~~--~R~L~g~l~ 307 (440)
T PRK14088 243 ---EFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEI-------EH--GELPEEVLNFVAEN-VDDN--LRRLRGAII 307 (440)
T ss_pred ---HHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHh-------cC--CCCCHHHHHHHHhc-cccC--HHHHHHHHH
Confidence 15678889993 37899999999999999876543 13 45899999999985 4444 899999888
Q ss_pred HHHH
Q 005511 642 RLLE 645 (693)
Q Consensus 642 ~~i~ 645 (693)
++..
T Consensus 308 ~l~~ 311 (440)
T PRK14088 308 KLLV 311 (440)
T ss_pred HHHH
Confidence 7643
No 362
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.23 E-value=2.4e-10 Score=109.85 Aligned_cols=110 Identities=24% Similarity=0.341 Sum_probs=85.6
Q ss_pred CEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhh--cccccccccCcCcccchHHHH
Q 005511 479 YTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEK--GGRRIGFDLDYDEKDSSYNRI 556 (693)
Q Consensus 479 ~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~--~~~~~~f~~~~~~~~~~~~~l 556 (693)
+|||||||++.++-+....|.+.+|+-. -.++|++||.+-..+.. ....+|
T Consensus 289 pGVLFIDEvHMLDIEcFsFlNrAlE~d~------------~PiiimaTNrgit~iRGTn~~SphG--------------- 341 (454)
T KOG2680|consen 289 PGVLFIDEVHMLDIECFSFLNRALENDM------------APIIIMATNRGITRIRGTNYRSPHG--------------- 341 (454)
T ss_pred cceEEEeeehhhhhHHHHHHHHHhhhcc------------CcEEEEEcCCceEEeecCCCCCCCC---------------
Confidence 6899999999999999999999999833 23788999988765542 222233
Q ss_pred HHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchH
Q 005511 557 KSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPL 636 (693)
Q Consensus 557 ~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l 636 (693)
++-+|++|+ .+|...|++.+++.+|++..+.+ -.+.+++++++.|..-+. +..|
T Consensus 342 -----------iP~D~lDR~-lII~t~py~~~d~~~IL~iRc~E---------Edv~m~~~A~d~Lt~i~~-----~tsL 395 (454)
T KOG2680|consen 342 -----------IPIDLLDRM-LIISTQPYTEEDIKKILRIRCQE---------EDVEMNPDALDLLTKIGE-----ATSL 395 (454)
T ss_pred -----------CcHHHhhhh-heeecccCcHHHHHHHHHhhhhh---------hccccCHHHHHHHHHhhh-----hhhH
Confidence 778999999 99999999999999999776653 235689999999987433 3346
Q ss_pred HHHHH
Q 005511 637 RRAIM 641 (693)
Q Consensus 637 ~~~i~ 641 (693)
+-+++
T Consensus 396 RYai~ 400 (454)
T KOG2680|consen 396 RYAIH 400 (454)
T ss_pred HHHHH
Confidence 66666
No 363
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.5e-10 Score=113.27 Aligned_cols=106 Identities=24% Similarity=0.395 Sum_probs=74.2
Q ss_pred CeEEEEeccchhhhCCCCCC----hHhHHHHHhhhhcC------------CCcEEEEEechHHHHhhhhcCHHHhccCC-
Q 005511 135 EIILFIDEVHTLIGAGAAEG----AIDAANILKPSLAR------------GELQCIGATTLDEYRKHIEKDPALERRFQ- 197 (693)
Q Consensus 135 ~~vL~iDEid~l~~~~~~~~----~~~~~~~L~~~l~~------------~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~- 197 (693)
.+|+||||||.++..+...+ ...++.-|+++++. .++.+|+++...-.. --++-|.|..||+
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sK-PSDLiPELQGRfPI 329 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAK-PSDLIPELQGRFPI 329 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCC-hhhcChhhcCCCce
Confidence 45999999999987654222 23467778888763 447778876432111 1167899999999
Q ss_pred ccccCCCCHHHHHHHHHH----HHHhHhh-----hcCcccChHHHHHHHHhhh
Q 005511 198 PVKVPEPSVDETIQILKG----LRERYEI-----HHKLRYTDEALVSAAQLSY 241 (693)
Q Consensus 198 ~i~~~~p~~~e~~~il~~----~~~~~~~-----~~~~~~~~~~l~~l~~~~~ 241 (693)
.+++..++.++...||.. +.++|.. .-.+.+++++++.+|..+.
T Consensus 330 RVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~ 382 (444)
T COG1220 330 RVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAY 382 (444)
T ss_pred EEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHH
Confidence 999999999999999873 4444432 2234678888888888763
No 364
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.23 E-value=2.2e-10 Score=118.74 Aligned_cols=172 Identities=19% Similarity=0.227 Sum_probs=108.4
Q ss_pred ccCCHHHHHHHHHHHhc--CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCcccchHHH
Q 005511 44 VVGRQPQIERVVQILGR--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEE 121 (693)
Q Consensus 44 iiG~~~~~~~l~~~l~~--~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 121 (693)
++|....++++.+.+.. ....+|||+|++||||+++|+++...... .+.+++.++|..+... ..+
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r-------~~~pfv~vnc~~~~~~-----~l~- 67 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKR-------WQGPLVKLNCAALSEN-----LLD- 67 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCc-------cCCCeEEEeCCCCChH-----HHH-
Confidence 57888888887776554 45678999999999999999999876532 2568999999765311 011
Q ss_pred HHHHHHH---------------HHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCC-------------CcEE
Q 005511 122 RLKKLME---------------EIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG-------------ELQC 173 (693)
Q Consensus 122 ~l~~~~~---------------~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~v 173 (693)
..+|. ......+++|||||++.|. .+.+..|..+++.+ ++.+
T Consensus 68 --~~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~--------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~Ri 137 (329)
T TIGR02974 68 --SELFGHEAGAFTGAQKRHQGRFERADGGTLFLDELATAS--------LLVQEKLLRVIEYGEFERVGGSQTLQVDVRL 137 (329)
T ss_pred --HHHhccccccccCcccccCCchhhCCCCEEEeCChHhCC--------HHHHHHHHHHHHcCcEEecCCCceeccceEE
Confidence 11111 1223456799999999994 44777787777643 3688
Q ss_pred EEEechHHHH--hhhhcCHHHhccCCc--cccCCCC--HHHHHHHHHHHHHhHhhhc--C--cccChHHHHHHHH
Q 005511 174 IGATTLDEYR--KHIEKDPALERRFQP--VKVPEPS--VDETIQILKGLRERYEIHH--K--LRYTDEALVSAAQ 238 (693)
Q Consensus 174 I~~t~~~~~~--~~~~l~~~l~~Rf~~--i~~~~p~--~~e~~~il~~~~~~~~~~~--~--~~~~~~~l~~l~~ 238 (693)
|++|+..... ..-.+.+.|..||.. |.+|++. .++...+++.++.++.... . ..++++++..+..
T Consensus 138 I~at~~~l~~~~~~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~ 212 (329)
T TIGR02974 138 VCATNADLPALAAEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLE 212 (329)
T ss_pred EEechhhHHHHhhcCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHh
Confidence 9888764311 111245777888864 5555554 2345555555554433221 2 3566776665554
No 365
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.23 E-value=1.5e-10 Score=125.88 Aligned_cols=173 Identities=15% Similarity=0.232 Sum_probs=117.0
Q ss_pred EEEEeccCCCcHHHHHHHHHHHhcC--CCcceeeeccccccchhhhhhhcCCCCCCcCcCccchhhHHHHcCCCEEEEEc
Q 005511 408 SFIFSGPTGVGKSELAKALAAYYFG--SEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFD 485 (693)
Q Consensus 408 ~iLl~Gp~GtGKt~lA~~la~~l~~--~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iD 485 (693)
.++|+|++|+|||.|+.++++.+.. .+..++.+.+.++...... .+.. + ....+...++. ..+|+||
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~-al~~------~--~~~~f~~~y~~--~DLLlID 384 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFIN-SIRD------G--KGDSFRRRYRE--MDILLVD 384 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHH-HHHh------c--cHHHHHHHhhc--CCEEEEe
Confidence 4999999999999999999998743 3566777887776543111 0100 0 01123333333 3599999
Q ss_pred cCcccCH--HHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHH
Q 005511 486 EIEKAHP--DVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEE 563 (693)
Q Consensus 486 Eid~l~~--~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~ 563 (693)
|++.+.. ..+..|+.+++.-. ..+..+|+|||.....+.
T Consensus 385 DIq~l~gke~tqeeLF~l~N~l~----------e~gk~IIITSd~~P~eL~----------------------------- 425 (617)
T PRK14086 385 DIQFLEDKESTQEEFFHTFNTLH----------NANKQIVLSSDRPPKQLV----------------------------- 425 (617)
T ss_pred hhccccCCHHHHHHHHHHHHHHH----------hcCCCEEEecCCChHhhh-----------------------------
Confidence 9999843 34566666665411 112347778886654321
Q ss_pred HhhcCchhHhhccC--cEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHH
Q 005511 564 LKQYFRPEFLNRLD--EMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIM 641 (693)
Q Consensus 564 l~~~~~~~l~~R~~--~~v~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~ 641 (693)
.+.+.|.+||. .++.+.+++.+.+..|+++.... ++ +.++++++++|+.. +..+ .|.|..+|.
T Consensus 426 ---~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~-------r~--l~l~~eVi~yLa~r-~~rn--vR~LegaL~ 490 (617)
T PRK14086 426 ---TLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQ-------EQ--LNAPPEVLEFIASR-ISRN--IRELEGALI 490 (617)
T ss_pred ---hccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHh-------cC--CCCCHHHHHHHHHh-ccCC--HHHHHHHHH
Confidence 16789999994 36899999999999999876543 13 56899999999985 5555 888988888
Q ss_pred HHHH
Q 005511 642 RLLE 645 (693)
Q Consensus 642 ~~i~ 645 (693)
++..
T Consensus 491 rL~a 494 (617)
T PRK14086 491 RVTA 494 (617)
T ss_pred HHHH
Confidence 7653
No 366
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.22 E-value=5.6e-10 Score=106.92 Aligned_cols=181 Identities=21% Similarity=0.286 Sum_probs=119.0
Q ss_pred ccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhc
Q 005511 376 KRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLI 455 (693)
Q Consensus 376 ~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 455 (693)
+.++|-+..++.|.+.......|. |..++||+|+.|||||++++++...+...+..++.+.-.++..-
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~-----pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l------- 94 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGL-----PANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDL------- 94 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCC-----CCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccH-------
Confidence 457888888888888777665543 34589999999999999999999998777777777665554321
Q ss_pred CCCCCCcCcCccchhhHHHHcCC-CEEEEEccCcc-cCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhh
Q 005511 456 GSPPGYVGYTEGGQLTEAVRRRP-YTVVLFDEIEK-AHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVI 533 (693)
Q Consensus 456 g~~~~~~g~~~~~~l~~~~~~~~-~~vl~iDEid~-l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i 533 (693)
..+.+.++..+ .-|||+|++-- ........|..+||+|--. .+.|++|.+|||...-+-
T Consensus 95 ------------~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~-------~P~NvliyATSNRRHLv~ 155 (249)
T PF05673_consen 95 ------------PELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEA-------RPDNVLIYATSNRRHLVP 155 (249)
T ss_pred ------------HHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCcccc-------CCCcEEEEEecchhhccc
Confidence 33455555433 56999998542 2334567888888876433 467999999999543211
Q ss_pred hhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHHHHH
Q 005511 534 EKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKE 600 (693)
Q Consensus 534 ~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l~~ 600 (693)
+......+. ..+.... .+...+. -+|.+||.-.+.|.+++.++..+|++..+..
T Consensus 156 E~~~d~~~~-----~~~eih~------~d~~eEk--lSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~ 209 (249)
T PF05673_consen 156 ESFSDREDI-----QDDEIHP------SDTIEEK--LSLSDRFGLWLSFYPPDQEEYLAIVRHYAER 209 (249)
T ss_pred hhhhhccCC-----CccccCc------chHHHHH--HhHHHhCCcEEEecCCCHHHHHHHHHHHHHH
Confidence 100000000 0000000 1111111 3688999999999999999999999988864
No 367
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=4.5e-10 Score=113.46 Aligned_cols=189 Identities=23% Similarity=0.329 Sum_probs=125.6
Q ss_pred CCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCcccc-hHHHHHHHHHHHH----HhCCCeE
Q 005511 63 KNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRG-EFEERLKKLMEEI----KQSDEII 137 (693)
Q Consensus 63 ~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~~l~~~~~~~----~~~~~~v 137 (693)
.+||||.||+|+|||.||+.+|+.+ +.++...+|..+.. ..|+| +.+.-+..++..| .+++..|
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~l----------dVPfaIcDcTtLTQ-AGYVGeDVEsvi~KLl~~A~~nVekAQqGI 294 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVL----------DVPFAICDCTTLTQ-AGYVGEDVESVIQKLLQEAEYNVEKAQQGI 294 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHh----------CCCeEEecccchhh-cccccccHHHHHHHHHHHccCCHHHHhcCe
Confidence 3699999999999999999999999 88899999988875 45666 4556677777665 3456779
Q ss_pred EEEeccchhhhCCCC------CChHhHHHHHhhhhcC---------------CC--------cEEEEEechH--------
Q 005511 138 LFIDEVHTLIGAGAA------EGAIDAANILKPSLAR---------------GE--------LQCIGATTLD-------- 180 (693)
Q Consensus 138 L~iDEid~l~~~~~~------~~~~~~~~~L~~~l~~---------------~~--------v~vI~~t~~~-------- 180 (693)
+||||+|.+...... -++..++..|++++|. ++ +.+|+.+...
T Consensus 295 VflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~r 374 (564)
T KOG0745|consen 295 VFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISR 374 (564)
T ss_pred EEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHH
Confidence 999999999743211 1234577888888762 11 2333322100
Q ss_pred -----------------------------H------H--------HhhhhcCHHHhccCC-ccccCCCCHHHHHHHHHH-
Q 005511 181 -----------------------------E------Y--------RKHIEKDPALERRFQ-PVKVPEPSVDETIQILKG- 215 (693)
Q Consensus 181 -----------------------------~------~--------~~~~~l~~~l~~Rf~-~i~~~~p~~~e~~~il~~- 215 (693)
. + .-.+.+-|.|..||+ .+.|..++.+++.++|..
T Consensus 375 R~~d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEP 454 (564)
T KOG0745|consen 375 RLDDKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEP 454 (564)
T ss_pred hhcchhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhcc
Confidence 0 0 002345678888999 779999999999999974
Q ss_pred ---HHHhHhhh-----cCcccChHHHHHHHHhhhhhhcccCCchhhhhHHHHHhhHHH
Q 005511 216 ---LRERYEIH-----HKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVR 265 (693)
Q Consensus 216 ---~~~~~~~~-----~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~a~~~~~ 265 (693)
+..++... -.+.+++++++.+|+++-.- ..-.+....+++.+...+.
T Consensus 455 knaL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r---~TGARgLRsIlE~~Lleam 509 (564)
T KOG0745|consen 455 KNALGKQYKKLFGMDNVELHFTEKALEAIAQLALKR---KTGARGLRSILESLLLEAM 509 (564)
T ss_pred hhhHHHHHHHHhccCCeeEEecHHHHHHHHHHHHhh---ccchHHHHHHHHHHHhhhc
Confidence 33333322 23468899999999987332 1112444555555554443
No 368
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.22 E-value=9.4e-11 Score=107.31 Aligned_cols=144 Identities=27% Similarity=0.382 Sum_probs=93.1
Q ss_pred cCCHHHHHHHHHHHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCcccchHHHH-H
Q 005511 45 VGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEER-L 123 (693)
Q Consensus 45 iG~~~~~~~l~~~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~-l 123 (693)
+|++.++..+...+......+++++||||||||++++.+++.+.. .+.+++.+++................ .
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 73 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFR-------PGAPFLYLNASDLLEGLVVAELFGHFLV 73 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhc-------CCCCeEEEehhhhhhhhHHHHHhhhhhH
Confidence 478889999999988877889999999999999999999998852 25667888776544221110000000 0
Q ss_pred HHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhc----CCCcEEEEEechHHHHhhhhcCHHHhccCC-c
Q 005511 124 KKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA----RGELQCIGATTLDEYRKHIEKDPALERRFQ-P 198 (693)
Q Consensus 124 ~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~----~~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~-~ 198 (693)
...........+.+|++||++.+.+. ........+..... ..++.+|++++.... ..+++.+.+||. +
T Consensus 74 ~~~~~~~~~~~~~~lilDe~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~---~~~~~~~~~r~~~~ 146 (151)
T cd00009 74 RLLFELAEKAKPGVLFIDEIDSLSRG----AQNALLRVLETLNDLRIDRENVRVIGATNRPLL---GDLDRALYDRLDIR 146 (151)
T ss_pred hHHHHhhccCCCeEEEEeChhhhhHH----HHHHHHHHHHhcCceeccCCCeEEEEecCcccc---CCcChhHHhhhccE
Confidence 11122233456789999999987221 01123333343333 357888998887653 246788899995 6
Q ss_pred cccC
Q 005511 199 VKVP 202 (693)
Q Consensus 199 i~~~ 202 (693)
+.++
T Consensus 147 i~~~ 150 (151)
T cd00009 147 IVIP 150 (151)
T ss_pred eecC
Confidence 6665
No 369
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.20 E-value=7.3e-11 Score=121.47 Aligned_cols=142 Identities=15% Similarity=0.231 Sum_probs=92.3
Q ss_pred eEEEEeccCCCcHHHHHHHHHHHhcCCCc-----ceeeeccccccchhhhhhh--cCCC-----CC----CcCcCccchh
Q 005511 407 ASFIFSGPTGVGKSELAKALAAYYFGSEE-----AMIRLDMSEFMERHTVSKL--IGSP-----PG----YVGYTEGGQL 470 (693)
Q Consensus 407 ~~iLl~Gp~GtGKt~lA~~la~~l~~~~~-----~~~~~~~~~~~~~~~~~~l--~g~~-----~~----~~g~~~~~~l 470 (693)
+.+||+||+|+|||++|+.+|+.+.+... ++-.+............++ +.+. .| .++.+..+.+
T Consensus 22 hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR~l 101 (325)
T PRK08699 22 NAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVREI 101 (325)
T ss_pred eEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHHHH
Confidence 46999999999999999999999865321 2222111111111111111 1100 01 1233333555
Q ss_pred hHHHHc----CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhcccccccccCc
Q 005511 471 TEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDY 546 (693)
Q Consensus 471 ~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~ 546 (693)
.+.+.. +...|+++|+++.+++..+|.|++.||+. ..++.||++|+....
T Consensus 102 ~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep-----------~~~~~~Ilvth~~~~--------------- 155 (325)
T PRK08699 102 IDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEP-----------PPQVVFLLVSHAADK--------------- 155 (325)
T ss_pred HHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhC-----------cCCCEEEEEeCChHh---------------
Confidence 555543 33579999999999999999999999983 234567777764433
Q ss_pred CcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHH
Q 005511 547 DEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADI 596 (693)
Q Consensus 547 ~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~ 596 (693)
+.|.+.+|| ..+.|+|++.+++.+.+..
T Consensus 156 ---------------------ll~ti~SRc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 156 ---------------------VLPTIKSRC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred ---------------------ChHHHHHHh-hhhcCCCCCHHHHHHHHHh
Confidence 668899999 9999999999998877643
No 370
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.19 E-value=5.1e-10 Score=116.15 Aligned_cols=178 Identities=20% Similarity=0.199 Sum_probs=109.5
Q ss_pred CCCccCCHHHHHHHHHHHhc--CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCcccch
Q 005511 41 LDPVVGRQPQIERVVQILGR--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGE 118 (693)
Q Consensus 41 ~~~iiG~~~~~~~l~~~l~~--~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 118 (693)
+++++|.+..++++.+.+.. ....+|+|+|++||||+++|+++...... .+.+++.++|..+... .
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r-------~~~pfv~v~c~~~~~~-----~ 72 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSR-------WQGPFISLNCAALNEN-----L 72 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCc-------cCCCeEEEeCCCCCHH-----H
Confidence 67899999999988876654 45678999999999999999999865422 2568999999875311 0
Q ss_pred HHHHH------------HHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCC-------------CcEE
Q 005511 119 FEERL------------KKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG-------------ELQC 173 (693)
Q Consensus 119 ~~~~l------------~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~v 173 (693)
.+..+ ...........++.|||||++.|. ...+..|..+++.+ ++.+
T Consensus 73 ~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~--------~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~Ri 144 (326)
T PRK11608 73 LDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAP--------MLVQEKLLRVIEYGELERVGGSQPLQVNVRL 144 (326)
T ss_pred HHHHHccccccccCCcccccCCchhccCCCeEEeCChhhCC--------HHHHHHHHHHHhcCcEEeCCCCceeeccEEE
Confidence 01000 000111233456689999999994 34677777777543 3678
Q ss_pred EEEechHHH--HhhhhcCHHHhccCCccccCCCCHHHH----HHHHHHHHHhHhhhcC----cccChHHHHHHHH
Q 005511 174 IGATTLDEY--RKHIEKDPALERRFQPVKVPEPSVDET----IQILKGLRERYEIHHK----LRYTDEALVSAAQ 238 (693)
Q Consensus 174 I~~t~~~~~--~~~~~l~~~l~~Rf~~i~~~~p~~~e~----~~il~~~~~~~~~~~~----~~~~~~~l~~l~~ 238 (693)
|++|+..-. ...-.+.+.|..||..+.+..|+-.+| ..+++.++.++....+ ..++++++..+.+
T Consensus 145 I~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~ 219 (326)
T PRK11608 145 VCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLN 219 (326)
T ss_pred EEeCchhHHHHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHh
Confidence 888876431 111134677888987544455554444 4445554443322211 2355555554443
No 371
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.19 E-value=3.1e-10 Score=122.41 Aligned_cols=178 Identities=19% Similarity=0.270 Sum_probs=118.8
Q ss_pred eEEEEeccCCCcHHHHHHHHHHHhc--CCCcceeeeccccccchhhhhhhcCCCCCCcCcCccchhhHHHHcCCCEEEEE
Q 005511 407 ASFIFSGPTGVGKSELAKALAAYYF--GSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLF 484 (693)
Q Consensus 407 ~~iLl~Gp~GtGKt~lA~~la~~l~--~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~i 484 (693)
.+++|+|++|+|||.|++++++.+. ..+..++.+.+.++...... .+ +. +......+....+. ..+|+|
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~-~l-~~-----~~~~~~~~~~~~~~--~dvLiI 212 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVD-IL-QK-----THKEIEQFKNEICQ--NDVLII 212 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHH-HH-HH-----hhhHHHHHHHHhcc--CCEEEE
Confidence 3599999999999999999999763 23456677777665532110 00 00 00000112222232 349999
Q ss_pred ccCcccC--HHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHH
Q 005511 485 DEIEKAH--PDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTE 562 (693)
Q Consensus 485 DEid~l~--~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~ 562 (693)
||++.+. ...++.|..++..-. ..+..+|+|+|..+..+
T Consensus 213 DDiq~l~~k~~~~e~lf~l~N~~~----------~~~k~iIltsd~~P~~l----------------------------- 253 (450)
T PRK14087 213 DDVQFLSYKEKTNEIFFTIFNNFI----------ENDKQLFFSSDKSPELL----------------------------- 253 (450)
T ss_pred eccccccCCHHHHHHHHHHHHHHH----------HcCCcEEEECCCCHHHH-----------------------------
Confidence 9999886 567777777775421 11225788888665432
Q ss_pred HHhhcCchhHhhccC--cEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHH
Q 005511 563 ELKQYFRPEFLNRLD--EMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAI 640 (693)
Q Consensus 563 ~l~~~~~~~l~~R~~--~~v~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i 640 (693)
..+.+.|.+||. .++.+.+|+.+++.+|+++.++.. |..+.++++++++|+.. ..++ +|.|..++
T Consensus 254 ---~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~-------gl~~~l~~evl~~Ia~~-~~gd--~R~L~gaL 320 (450)
T PRK14087 254 ---NGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQ-------NIKQEVTEEAINFISNY-YSDD--VRKIKGSV 320 (450)
T ss_pred ---hhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhc-------CCCCCCCHHHHHHHHHc-cCCC--HHHHHHHH
Confidence 126789999994 479999999999999998877641 43346999999999985 4444 88888888
Q ss_pred HHHHH
Q 005511 641 MRLLE 645 (693)
Q Consensus 641 ~~~i~ 645 (693)
.++..
T Consensus 321 ~~l~~ 325 (450)
T PRK14087 321 SRLNF 325 (450)
T ss_pred HHHHH
Confidence 76653
No 372
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=99.19 E-value=1.7e-10 Score=115.52 Aligned_cols=157 Identities=15% Similarity=0.264 Sum_probs=102.0
Q ss_pred ChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCc----ceeeeccccccchhhhhhh-
Q 005511 380 GQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEE----AMIRLDMSEFMERHTVSKL- 454 (693)
Q Consensus 380 g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~----~~~~~~~~~~~~~~~~~~l- 454 (693)
.|..+++.+..++...+. .+.+||+|| +||+++|+.+|+.+.+.+. ++..++...........++
T Consensus 6 ~q~~~~~~L~~~~~~~rl--------~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~ 75 (290)
T PRK07276 6 KQPKVFQRFQTILEQDRL--------NHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVT 75 (290)
T ss_pred HHHHHHHHHHHHHHcCCc--------ceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCee
Confidence 366777778777776542 246999996 6899999999999865431 2211111011111111111
Q ss_pred -cCCCCCCcCcCccchhhHHHHc----CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCC
Q 005511 455 -IGSPPGYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVG 529 (693)
Q Consensus 455 -~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~ 529 (693)
+.+....++..+.+.+...+.. +.+.|++||++|+++....|+||+.||+ +..+++||++|+..
T Consensus 76 ~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEE-----------Pp~~t~~iL~t~~~ 144 (290)
T PRK07276 76 VIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEE-----------PQSEIYIFLLTNDE 144 (290)
T ss_pred eecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcC-----------CCCCeEEEEEECCh
Confidence 1110011222222444444433 3457999999999999999999999999 56788999988755
Q ss_pred hhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHH
Q 005511 530 SSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIAD 595 (693)
Q Consensus 530 ~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~ 595 (693)
.. +.|.+++|| ++++|++ +.+++.+++.
T Consensus 145 ~~------------------------------------lLpTI~SRc-q~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 145 NK------------------------------------VLPTIKSRT-QIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred hh------------------------------------CchHHHHcc-eeeeCCC-cHHHHHHHHH
Confidence 54 679999999 9999977 6777776664
No 373
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.19 E-value=3.7e-10 Score=125.94 Aligned_cols=179 Identities=22% Similarity=0.309 Sum_probs=118.9
Q ss_pred cCCCCCccCCHHHHHHHHHHHhc--CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCcc
Q 005511 38 EGKLDPVVGRQPQIERVVQILGR--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKY 115 (693)
Q Consensus 38 ~~~~~~iiG~~~~~~~l~~~l~~--~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 115 (693)
..+++.++|++..++++.+.+.. ....+|||+|++||||+++|+++.+.... .+.+++.++|..+...
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r-------~~~pfv~i~c~~~~~~--- 261 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPR-------AKRPFVKVNCAALSET--- 261 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCC-------CCCCeEEeecCCCCHH---
Confidence 35789999999999998887654 45678999999999999999999987632 2568999999766310
Q ss_pred cchHHHHHHHHHH---------------HHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCC-----------
Q 005511 116 RGEFEERLKKLME---------------EIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG----------- 169 (693)
Q Consensus 116 ~g~~~~~l~~~~~---------------~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~----------- 169 (693)
..+ ..+|+ ......+++|||||++.|. .+.+..|..+++.+
T Consensus 262 --~~~---~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~--------~~~Q~~Ll~~l~~~~~~~~~~~~~~ 328 (534)
T TIGR01817 262 --LLE---SELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEIS--------PAFQAKLLRVLQEGEFERVGGNRTL 328 (534)
T ss_pred --HHH---HHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCC--------HHHHHHHHHHHhcCcEEECCCCceE
Confidence 001 11111 1223446699999999994 34777788777643
Q ss_pred --CcEEEEEechHHHH--hhhhcCHHHhccCC--ccccCCCC--HHHHHHHHHHHHHhHhhhc--CcccChHHHHHHHHh
Q 005511 170 --ELQCIGATTLDEYR--KHIEKDPALERRFQ--PVKVPEPS--VDETIQILKGLRERYEIHH--KLRYTDEALVSAAQL 239 (693)
Q Consensus 170 --~v~vI~~t~~~~~~--~~~~l~~~l~~Rf~--~i~~~~p~--~~e~~~il~~~~~~~~~~~--~~~~~~~~l~~l~~~ 239 (693)
++.+|++|+..... ..-.+.+.|..|+. .|.+|++. .++...+++.++.++.... ...++++++..+...
T Consensus 329 ~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~ 408 (534)
T TIGR01817 329 KVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSC 408 (534)
T ss_pred eecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhC
Confidence 36888888764311 11124567777886 45566665 3556666666666543222 256777777766553
No 374
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.19 E-value=7.9e-10 Score=112.96 Aligned_cols=148 Identities=16% Similarity=0.217 Sum_probs=104.1
Q ss_pred HHHHHHHHHHhcCCCCC-eEEECCCCChHHHHHHHHHHHHhcCCCCC--------------CCCCceEEEEeccccccCC
Q 005511 49 PQIERVVQILGRRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDVPD--------------TIEGKKVITLDMGLLVAGT 113 (693)
Q Consensus 49 ~~~~~l~~~l~~~~~~~-vLl~Gp~GtGKT~la~~la~~l~~~~~~~--------------~~~~~~~~~~~~~~l~~~~ 113 (693)
..-+.+...+.....+| +||+||+|+||+++|+.+|+.+.+..... ...+..++.+... .+.
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~---~~~ 85 (325)
T PRK06871 9 PTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPI---DNK 85 (325)
T ss_pred HHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccc---cCC
Confidence 44566777777755554 56899999999999999999998743110 1122334444321 011
Q ss_pred cccchHHHHHHHHHHHHH----hCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC--CCcEEEEEechHHHHhhhh
Q 005511 114 KYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--GELQCIGATTLDEYRKHIE 187 (693)
Q Consensus 114 ~~~g~~~~~l~~~~~~~~----~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~~t~~~~~~~~~~ 187 (693)
....+.++.+...+. .+...|++||++|.|. ..+.|+|++.+|. ..+.+|.+|+.++ .
T Consensus 86 ---~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~--------~~AaNaLLKtLEEPp~~~~fiL~t~~~~-----~ 149 (325)
T PRK06871 86 ---DIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLT--------EAAANALLKTLEEPRPNTYFLLQADLSA-----A 149 (325)
T ss_pred ---CCCHHHHHHHHHHHhhccccCCceEEEEechhhhC--------HHHHHHHHHHhcCCCCCeEEEEEECChH-----h
Confidence 112344555555543 3445799999999995 4488999999984 4577777887776 6
Q ss_pred cCHHHhccCCccccCCCCHHHHHHHHHH
Q 005511 188 KDPALERRFQPVKVPEPSVDETIQILKG 215 (693)
Q Consensus 188 l~~~l~~Rf~~i~~~~p~~~e~~~il~~ 215 (693)
+.|.++||+..+.|++|+.++..+.|..
T Consensus 150 llpTI~SRC~~~~~~~~~~~~~~~~L~~ 177 (325)
T PRK06871 150 LLPTIYSRCQTWLIHPPEEQQALDWLQA 177 (325)
T ss_pred CchHHHhhceEEeCCCCCHHHHHHHHHH
Confidence 8999999999999999999998877764
No 375
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.19 E-value=5.1e-10 Score=123.22 Aligned_cols=201 Identities=15% Similarity=0.173 Sum_probs=120.5
Q ss_pred CCCCccCCHHHHHHHHHHHhcCC------------CCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEE---E
Q 005511 40 KLDPVVGRQPQIERVVQILGRRT------------KNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVIT---L 104 (693)
Q Consensus 40 ~~~~iiG~~~~~~~l~~~l~~~~------------~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~---~ 104 (693)
-...+.|++.++..+.-.+.... ..|+||+|+||||||++++++++..... .+.. .
T Consensus 201 i~p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~---------~~~~~~~~ 271 (509)
T smart00350 201 LAPSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRA---------VYTTGKGS 271 (509)
T ss_pred hCccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcc---------eEcCCCCC
Confidence 44578999998777666654321 1289999999999999999999876321 1110 0
Q ss_pred eccccccCC---cccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCC------------
Q 005511 105 DMGLLVAGT---KYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG------------ 169 (693)
Q Consensus 105 ~~~~l~~~~---~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~------------ 169 (693)
++..+.... ...|++ .++. +.+.....++++|||++.+.+. .+..|...|+.+
T Consensus 272 ~~~~l~~~~~~~~~~g~~--~~~~--G~l~~A~~Gil~iDEi~~l~~~--------~q~~L~e~me~~~i~i~k~G~~~~ 339 (509)
T smart00350 272 SAVGLTAAVTRDPETREF--TLEG--GALVLADNGVCCIDEFDKMDDS--------DRTAIHEAMEQQTISIAKAGITTT 339 (509)
T ss_pred CcCCccccceEccCcceE--EecC--ccEEecCCCEEEEechhhCCHH--------HHHHHHHHHhcCEEEEEeCCEEEE
Confidence 111111100 001110 0100 1122345569999999998543 677777777542
Q ss_pred ---CcEEEEEechHHH--------HhhhhcCHHHhccCC--ccccCCCCHHHHHHHHHHHHHhHhhh-------cCcccC
Q 005511 170 ---ELQCIGATTLDEY--------RKHIEKDPALERRFQ--PVKVPEPSVDETIQILKGLRERYEIH-------HKLRYT 229 (693)
Q Consensus 170 ---~v~vI~~t~~~~~--------~~~~~l~~~l~~Rf~--~i~~~~p~~~e~~~il~~~~~~~~~~-------~~~~~~ 229 (693)
.+.+|+++|+..- ..-+.+++++++||+ .+.++.|+.+...+|.++.+...... ....++
T Consensus 340 l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~ 419 (509)
T smart00350 340 LNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPIS 419 (509)
T ss_pred ecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCC
Confidence 3678999998641 112368999999997 56778999999999998876532111 012355
Q ss_pred hHHHHHHHHhhhhhhcccCCchhhhhHHHHHhh
Q 005511 230 DEALVSAAQLSYQYISDRFLPDKAIDLIDEAGS 262 (693)
Q Consensus 230 ~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~a~~ 262 (693)
.+.+......+..++... ++..+.+++.....
T Consensus 420 ~~~l~~yi~~ar~~~~P~-ls~~~~~~i~~~y~ 451 (509)
T smart00350 420 QEFLRKYIAYAREKIKPK-LSEEAAEKLVKAYV 451 (509)
T ss_pred HHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHH
Confidence 666666666665533212 34555555554443
No 376
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=5.1e-10 Score=116.80 Aligned_cols=196 Identities=18% Similarity=0.249 Sum_probs=125.7
Q ss_pred cccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCC--Ccceeeeccccccchhhhh-h
Q 005511 377 RVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGS--EEAMIRLDMSEFMERHTVS-K 453 (693)
Q Consensus 377 ~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~--~~~~~~~~~~~~~~~~~~~-~ 453 (693)
.+.+.+..++++...+.....+..+. +++++||||||||.+++.+.+.+... ...++.+||-.+.+...+. .
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~~p~-----n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~ 92 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGERPS-----NIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSK 92 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCCCCc-----cEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHH
Confidence 36677888888888877665543332 59999999999999999999998332 1227999999887654322 2
Q ss_pred hcC---C-C-CCCcCcCccchhhHHHHc-CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecC
Q 005511 454 LIG---S-P-PGYVGYTEGGQLTEAVRR-RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSN 527 (693)
Q Consensus 454 l~g---~-~-~~~~g~~~~~~l~~~~~~-~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn 527 (693)
++. . | .|+.....-..+.+.+.+ ...-||++||+|.+...-.+.|+.++.-..- ...++.+|+.+|
T Consensus 93 i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~--------~~~~v~vi~i~n 164 (366)
T COG1474 93 ILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGE--------NKVKVSIIAVSN 164 (366)
T ss_pred HHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccc--------cceeEEEEEEec
Confidence 221 1 1 122221111444555554 3346899999999966644555555543210 134567888877
Q ss_pred CChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCc-EEEcCCCCHHHHHHHHHHHHHHHHHHHh
Q 005511 528 VGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDE-MIVFRQLTKLEVKEIADIMLKEVFDRLK 606 (693)
Q Consensus 528 ~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~-~v~f~~l~~~~~~~i~~~~l~~~~~~~~ 606 (693)
.-. +...++|-+.+++.. .|.|+||+.+++.+|+....+....
T Consensus 165 ~~~---------------------------------~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~--- 208 (366)
T COG1474 165 DDK---------------------------------FLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFS--- 208 (366)
T ss_pred cHH---------------------------------HHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhcc---
Confidence 321 122267777777744 4899999999999999877764210
Q ss_pred cCCCeEEeCHHHHHHHHHh
Q 005511 607 TKDIELQVTERFRERVVEE 625 (693)
Q Consensus 607 ~~~~~l~~~~~~~~~l~~~ 625 (693)
.-.+++++++.++..
T Consensus 209 ----~~~~~~~vl~lia~~ 223 (366)
T COG1474 209 ----AGVIDDDVLKLIAAL 223 (366)
T ss_pred ----CCCcCccHHHHHHHH
Confidence 123778888877754
No 377
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=99.18 E-value=2e-10 Score=114.47 Aligned_cols=143 Identities=17% Similarity=0.233 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhh--cCCC-C-
Q 005511 384 AVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL--IGSP-P- 459 (693)
Q Consensus 384 ~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l--~g~~-~- 459 (693)
..+.+...+...+. .+.+||+||+|+||+.+|..+|+.+++.+.+- .|..+.. ....++ +.+. .
T Consensus 5 ~~~~L~~~i~~~rl--------~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~---~c~~~~~-~~HPD~~~i~p~~~~ 72 (290)
T PRK05917 5 AWEALIQRVRDQKV--------PSAIILHGQDLSNLSARAYELASLILKETSPE---AAYKISQ-KIHPDIHEFSPQGKG 72 (290)
T ss_pred HHHHHHHHHHcCCc--------CeeEeeECCCCCcHHHHHHHHHHHHhCCCCcc---HHHHHhc-CCCCCEEEEecCCCC
Confidence 44555556554432 24699999999999999999999997643221 1111100 000011 1100 0
Q ss_pred CCcCcCccchhhHHHHc----CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhh
Q 005511 460 GYVGYTEGGQLTEAVRR----RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEK 535 (693)
Q Consensus 460 ~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~ 535 (693)
..++..+.+.+...+.. ++..|++||++|+++.+.+|+||+.||+ ++.+++||+.|+....
T Consensus 73 ~~I~idqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEE-----------Pp~~~~fiL~~~~~~~---- 137 (290)
T PRK05917 73 RLHSIETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLED-----------PPQHGVIILTSAKPQR---- 137 (290)
T ss_pred CcCcHHHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhc-----------CCCCeEEEEEeCChhh----
Confidence 11233333444444443 3357999999999999999999999999 6778899998876554
Q ss_pred cccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCC
Q 005511 536 GGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLT 586 (693)
Q Consensus 536 ~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~ 586 (693)
+.|.+++|| ..+.|+++.
T Consensus 138 --------------------------------ll~TI~SRc-q~~~~~~~~ 155 (290)
T PRK05917 138 --------------------------------LPPTIRSRS-LSIHIPMEE 155 (290)
T ss_pred --------------------------------CcHHHHhcc-eEEEccchh
Confidence 678888888 888888763
No 378
>PRK06620 hypothetical protein; Validated
Probab=99.18 E-value=3.7e-10 Score=109.47 Aligned_cols=145 Identities=15% Similarity=0.251 Sum_probs=92.8
Q ss_pred eEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCCcCcCccchhhHHHHcCCCEEEEEcc
Q 005511 407 ASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDE 486 (693)
Q Consensus 407 ~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDE 486 (693)
.+++|+||||||||++++++++.. +..++ ...... .+..+ ...+|+|||
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~---~~~~~--~~~~~~------------------------~~~~~--~~d~lliDd 93 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS---NAYII--KDIFFN------------------------EEILE--KYNAFIIED 93 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc---CCEEc--chhhhc------------------------hhHHh--cCCEEEEec
Confidence 359999999999999999988764 22111 100000 01111 225899999
Q ss_pred CcccCHH-HHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHh
Q 005511 487 IEKAHPD-VFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELK 565 (693)
Q Consensus 487 id~l~~~-~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~ 565 (693)
++.+... ....+..+.++|. .++++++..+..+
T Consensus 94 i~~~~~~~lf~l~N~~~e~g~--------------~ilits~~~p~~l-------------------------------- 127 (214)
T PRK06620 94 IENWQEPALLHIFNIINEKQK--------------YLLLTSSDKSRNF-------------------------------- 127 (214)
T ss_pred cccchHHHHHHHHHHHHhcCC--------------EEEEEcCCCcccc--------------------------------
Confidence 9977533 3333333335542 3555554332211
Q ss_pred hcCchhHhhccCc--EEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHH
Q 005511 566 QYFRPEFLNRLDE--MIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMR 642 (693)
Q Consensus 566 ~~~~~~l~~R~~~--~v~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~ 642 (693)
. + |+|++|+.. ++.+.+++.+++..++.+.... ++ +.++++++++|++. .+.+ +|.+.+.++.
T Consensus 128 ~-l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~-------~~--l~l~~ev~~~L~~~-~~~d--~r~l~~~l~~ 192 (214)
T PRK06620 128 T-L-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSI-------SS--VTISRQIIDFLLVN-LPRE--YSKIIEILEN 192 (214)
T ss_pred c-h-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHH-ccCC--HHHHHHHHHH
Confidence 0 5 899999932 7999999999998888776653 13 45999999999985 4444 7777777775
No 379
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.18 E-value=9.5e-11 Score=122.83 Aligned_cols=158 Identities=21% Similarity=0.348 Sum_probs=107.1
Q ss_pred CCCCCccCCHHHHHHHHHHHhc--CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCC---
Q 005511 39 GKLDPVVGRQPQIERVVQILGR--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGT--- 113 (693)
Q Consensus 39 ~~~~~iiG~~~~~~~l~~~l~~--~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--- 113 (693)
.+|++|+|..+++.++.+...+ ....+||+.|++||||..+|+++.+.... .+.+++.+||+.+-...
T Consensus 242 y~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R-------~~~PFIaiNCaAiPe~LlES 314 (560)
T COG3829 242 YTFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPR-------ANGPFIAINCAAIPETLLES 314 (560)
T ss_pred cchhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCcc-------cCCCeEEEecccCCHHHHHH
Confidence 3799999999999998887665 66789999999999999999999876644 36789999997653210
Q ss_pred ----cccchHHHHHH----HHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCC-------------CcE
Q 005511 114 ----KYRGEFEERLK----KLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG-------------ELQ 172 (693)
Q Consensus 114 ----~~~g~~~~~l~----~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~ 172 (693)
...|.+....+ .+|+ ..+++-||+|||..| ....+..|+++|+.. +++
T Consensus 315 ELFGye~GAFTGA~~~GK~GlfE---~A~gGTLFLDEIgem--------pl~LQaKLLRVLQEkei~rvG~t~~~~vDVR 383 (560)
T COG3829 315 ELFGYEKGAFTGASKGGKPGLFE---LANGGTLFLDEIGEM--------PLPLQAKLLRVLQEKEIERVGGTKPIPVDVR 383 (560)
T ss_pred HHhCcCCccccccccCCCCccee---eccCCeEEehhhccC--------CHHHHHHHHHHHhhceEEecCCCCceeeEEE
Confidence 00111111111 1222 234558999999999 455888888888643 389
Q ss_pred EEEEechHHHHhhhhcCHHHhc----cCCccccCCCCHHHHHHHHHHH
Q 005511 173 CIGATTLDEYRKHIEKDPALER----RFQPVKVPEPSVDETIQILKGL 216 (693)
Q Consensus 173 vI~~t~~~~~~~~~~l~~~l~~----Rf~~i~~~~p~~~e~~~il~~~ 216 (693)
||+|||...-. .+ -+..|+. |+.++.+..|+..+|.+-+..+
T Consensus 384 IIAATN~nL~~-~i-~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L 429 (560)
T COG3829 384 IIAATNRNLEK-MI-AEGTFREDLYYRLNVIPITIPPLRERKEDIPLL 429 (560)
T ss_pred EEeccCcCHHH-HH-hcCcchhhheeeeceeeecCCCcccCcchHHHH
Confidence 99999985421 11 2333443 7777777777776665544433
No 380
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.17 E-value=2.6e-10 Score=120.05 Aligned_cols=159 Identities=18% Similarity=0.310 Sum_probs=107.7
Q ss_pred CCCCccCCHHHHHHHHHHHhc--CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCC----
Q 005511 40 KLDPVVGRQPQIERVVQILGR--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGT---- 113 (693)
Q Consensus 40 ~~~~iiG~~~~~~~l~~~l~~--~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~---- 113 (693)
...+++|+...++++.+.+.. ....+||++|++||||-.+|+++.+.-.. .+.+++.+||..+....
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R-------~~~PFVavNcaAip~~l~ESE 211 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPR-------AKGPFIAVNCAAIPENLLESE 211 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcc-------cCCCceeeecccCCHHHHHHH
Confidence 577899999999999888765 56689999999999999999999987644 35689999997654210
Q ss_pred ---cccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCC-------------CcEEEEEe
Q 005511 114 ---KYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG-------------ELQCIGAT 177 (693)
Q Consensus 114 ---~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~vI~~t 177 (693)
...|.+......-.......+++.||+|||..| ..+++.-|+++++.+ ++.||++|
T Consensus 212 LFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~m--------pl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT 283 (464)
T COG2204 212 LFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEM--------PLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAAT 283 (464)
T ss_pred hhcccccCcCCcccccCcceeEcCCceEEeeccccC--------CHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeec
Confidence 001111111111112333456779999999999 455888888888643 37899999
Q ss_pred chHHHHhhh---hcCHHHhccCCccccCCCCHHHHHHHHH
Q 005511 178 TLDEYRKHI---EKDPALERRFQPVKVPEPSVDETIQILK 214 (693)
Q Consensus 178 ~~~~~~~~~---~l~~~l~~Rf~~i~~~~p~~~e~~~il~ 214 (693)
|..-.. .. ..-+.|.-|+.++.+..|+..||.+-+-
T Consensus 284 ~~dL~~-~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp 322 (464)
T COG2204 284 NRDLEE-EVAAGRFREDLYYRLNVVPLRLPPLRERKEDIP 322 (464)
T ss_pred CcCHHH-HHHcCCcHHHHHhhhccceecCCcccccchhHH
Confidence 874321 11 1234555588877777777665555333
No 381
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.17 E-value=6.7e-10 Score=121.17 Aligned_cols=208 Identities=19% Similarity=0.279 Sum_probs=124.9
Q ss_pred CCCCccCCHHHHHHHHHHHh--cCCCCCeEEECCCCChHHHHHHHHHHHHhc-CCCCCCCCCceEEEEeccccccCCccc
Q 005511 40 KLDPVVGRQPQIERVVQILG--RRTKNNPCLIGEPGVGKTAIAEGLAQRIAS-GDVPDTIEGKKVITLDMGLLVAGTKYR 116 (693)
Q Consensus 40 ~~~~iiG~~~~~~~l~~~l~--~~~~~~vLl~Gp~GtGKT~la~~la~~l~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~ 116 (693)
+|++++|.+..++++.+.+. .....+|||+|++||||+++|+++.+.+.. ......-.+.+++.++|+.+...
T Consensus 217 ~f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~---- 292 (538)
T PRK15424 217 VLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAES---- 292 (538)
T ss_pred chhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChh----
Confidence 68899999999999888765 356689999999999999999999986211 11001113678999999876421
Q ss_pred chHHHHHHHHHH----------------HHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCC----------
Q 005511 117 GEFEERLKKLME----------------EIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGE---------- 170 (693)
Q Consensus 117 g~~~~~l~~~~~----------------~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~---------- 170 (693)
..+ ..+|. ......++.|||||++.|. ...+..|..+++.+.
T Consensus 293 -lle---seLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp--------~~~Q~kLl~~L~e~~~~r~G~~~~~ 360 (538)
T PRK15424 293 -LLE---AELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMP--------LPLQTRLLRVLEEKEVTRVGGHQPV 360 (538)
T ss_pred -hHH---HHhcCCccccccCccccccCCchhccCCCEEEEcChHhCC--------HHHHHHHHhhhhcCeEEecCCCcee
Confidence 011 11111 1123445689999999994 447888888886543
Q ss_pred ---cEEEEEechHHHH--hhhhcCHHHhccCCccccCCCCHHHHHH----HHHHHHHhHhhhcCcccChHHHHHHHHhhh
Q 005511 171 ---LQCIGATTLDEYR--KHIEKDPALERRFQPVKVPEPSVDETIQ----ILKGLRERYEIHHKLRYTDEALVSAAQLSY 241 (693)
Q Consensus 171 ---v~vI~~t~~~~~~--~~~~l~~~l~~Rf~~i~~~~p~~~e~~~----il~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 241 (693)
+.+|++|+..-.. ..-.+.+.+..|+..+.+..|+..+|.+ +++.+++++....+..+++++
T Consensus 361 ~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a--------- 431 (538)
T PRK15424 361 PVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAAL--------- 431 (538)
T ss_pred ccceEEEEecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHH---------
Confidence 4788888764311 0001344566677766666666665554 334444332111222333333
Q ss_pred hhhcccCCchhhhhHHHHHhhHHHHhhcCCcHHHHHHHHHHHHHH
Q 005511 242 QYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQIT 286 (693)
Q Consensus 242 ~~~~~~~~~~~~~~ll~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (693)
..++..+. ..+....+|.++++++..++++.
T Consensus 432 ------------~~~~~~a~--~~L~~y~WPGNvREL~nvier~~ 462 (538)
T PRK15424 432 ------------RQGLQQCE--TLLLHYDWPGNVRELRNLMERLA 462 (538)
T ss_pred ------------HHhhHHHH--HHHHhCCCCchHHHHHHHHHHHH
Confidence 22232221 23455678888877776665553
No 382
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.16 E-value=5.9e-10 Score=121.83 Aligned_cols=201 Identities=18% Similarity=0.267 Sum_probs=123.4
Q ss_pred CCCCCccCCHHHHHHHHHHHhc--CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCccc
Q 005511 39 GKLDPVVGRQPQIERVVQILGR--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYR 116 (693)
Q Consensus 39 ~~~~~iiG~~~~~~~l~~~l~~--~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 116 (693)
.+|++++|..+.++++.+.+.. ....+|||+|++||||+++|+++.+.... .+.+++.++|..+...
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r-------~~~pfv~inC~~l~e~---- 277 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGR-------RDFPFVAINCGAIAES---- 277 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCc-------CCCCEEEeccccCChh----
Confidence 4688999999999998887653 55689999999999999999999876532 3678999999776321
Q ss_pred chHHHHHHHHHH----------------HHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCC----------
Q 005511 117 GEFEERLKKLME----------------EIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGE---------- 170 (693)
Q Consensus 117 g~~~~~l~~~~~----------------~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~---------- 170 (693)
.++ ..+|. ......++.|||||++.|. .+.+..|..+++.+.
T Consensus 278 -lle---seLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp--------~~~Q~~Ll~~L~~~~~~r~g~~~~~ 345 (526)
T TIGR02329 278 -LLE---AELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMP--------LPLQTRLLRVLEEREVVRVGGTEPV 345 (526)
T ss_pred -HHH---HHhcCCcccccccccccccccchhhcCCceEEecChHhCC--------HHHHHHHHHHHhcCcEEecCCCcee
Confidence 001 11111 1122345689999999994 447888888876443
Q ss_pred ---cEEEEEechHHHHh--hhhcCHHHhccCCccccCCCCHHHH----HHHHHHHHHhHhhhcCcccChHHHHHHHHhhh
Q 005511 171 ---LQCIGATTLDEYRK--HIEKDPALERRFQPVKVPEPSVDET----IQILKGLRERYEIHHKLRYTDEALVSAAQLSY 241 (693)
Q Consensus 171 ---v~vI~~t~~~~~~~--~~~l~~~l~~Rf~~i~~~~p~~~e~----~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 241 (693)
+.+|++|+...... .-.+.+.|..|+..+.+..|+..+| ..++..++.++....++.++++++..+
T Consensus 346 ~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~----- 420 (526)
T TIGR02329 346 PVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVL----- 420 (526)
T ss_pred eecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHh-----
Confidence 47888887643210 0013445556776555555555444 444455555433223334454444332
Q ss_pred hhhcccCCchhhhhHHHHHhhHHHHhhcCCcHHHHHHHHHHHHH
Q 005511 242 QYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQI 285 (693)
Q Consensus 242 ~~~~~~~~~~~~~~ll~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (693)
..+ ...+....+|.++++++..++.+
T Consensus 421 ----------------~~~--~~~L~~y~WPGNvrEL~nvier~ 446 (526)
T TIGR02329 421 ----------------AGV--ADPLQRYPWPGNVRELRNLVERL 446 (526)
T ss_pred ----------------HHH--HHHHHhCCCCchHHHHHHHHHHH
Confidence 111 11234456777777666655554
No 383
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.16 E-value=1.2e-10 Score=120.33 Aligned_cols=182 Identities=21% Similarity=0.317 Sum_probs=116.7
Q ss_pred CCCCccCCHHHHHHHHHHHhc--CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCC----
Q 005511 40 KLDPVVGRQPQIERVVQILGR--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGT---- 113 (693)
Q Consensus 40 ~~~~iiG~~~~~~~l~~~l~~--~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~---- 113 (693)
.+..|||+...+.++.+.+.. +...+|||.|++||||-.+|+++.+.... .+.+++.+||+.+-.+.
T Consensus 221 ~~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R-------~~kPfV~~NCAAlPesLlESE 293 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPR-------RDKPFVKLNCAALPESLLESE 293 (550)
T ss_pred ccccceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhCcc-------cCCCceeeeccccchHHHHHH
Confidence 577899999999998886654 66789999999999999999999977644 36789999997764321
Q ss_pred ---cccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCC-------------cEEEEEe
Q 005511 114 ---KYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGE-------------LQCIGAT 177 (693)
Q Consensus 114 ---~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~-------------v~vI~~t 177 (693)
...|.+...+..-.+.-...+++-||+|||..|. .+++..|++.++.++ |.||++|
T Consensus 294 LFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelP--------L~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAAT 365 (550)
T COG3604 294 LFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELP--------LALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAAT 365 (550)
T ss_pred HhcccccccccchhccCcceeecCCCeEechhhccCC--------HHHHHHHHHHHhhcceeecCCCceeEEEEEEEecc
Confidence 0112222222221122223456689999999994 447888888886543 7899999
Q ss_pred chHHHHhhhhcCHHHhc----cCCccccCCCCHHHH----HHHHHHHHHhHhhhc---CcccChHHHHHHHH
Q 005511 178 TLDEYRKHIEKDPALER----RFQPVKVPEPSVDET----IQILKGLRERYEIHH---KLRYTDEALVSAAQ 238 (693)
Q Consensus 178 ~~~~~~~~~~l~~~l~~----Rf~~i~~~~p~~~e~----~~il~~~~~~~~~~~---~~~~~~~~l~~l~~ 238 (693)
|..-.. . -.+-.|+. |+.++.+..|+..|| .-+...+++++.... .+.+++++++.+..
T Consensus 366 NRDL~~-~-V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~ 435 (550)
T COG3604 366 NRDLEE-M-VRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSS 435 (550)
T ss_pred chhHHH-H-HHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHc
Confidence 985321 1 12333333 666555555555444 334444444433222 44677777766654
No 384
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.15 E-value=9.3e-10 Score=103.06 Aligned_cols=167 Identities=25% Similarity=0.357 Sum_probs=119.8
Q ss_pred CCCCccCCHHHHHHHHH----HHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCcc
Q 005511 40 KLDPVVGRQPQIERVVQ----ILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKY 115 (693)
Q Consensus 40 ~~~~iiG~~~~~~~l~~----~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 115 (693)
.+.+++|.+.+.+.|.+ .+...+.+||||+|..|||||+|++++...... .+.++++++-.++..
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~-------~glrLVEV~k~dl~~---- 126 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYAD-------EGLRLVEVDKEDLAT---- 126 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHh-------cCCeEEEEcHHHHhh----
Confidence 56689999998887655 566678899999999999999999999999865 367789988766642
Q ss_pred cchHHHHHHHHHHHHHh-CCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC------CCcEEEEEechHHHHh-hh-
Q 005511 116 RGEFEERLKKLMEEIKQ-SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR------GELQCIGATTLDEYRK-HI- 186 (693)
Q Consensus 116 ~g~~~~~l~~~~~~~~~-~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~------~~v~vI~~t~~~~~~~-~~- 186 (693)
+-.+++.++. ..+.|||+||+- +.. +.+....|+..|+. ..|.+.+|+|+-..-+ .+
T Consensus 127 -------Lp~l~~~Lr~~~~kFIlFcDDLS--Fe~-----gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~ 192 (287)
T COG2607 127 -------LPDLVELLRARPEKFILFCDDLS--FEE-----GDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMK 192 (287)
T ss_pred -------HHHHHHHHhcCCceEEEEecCCC--CCC-----CchHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhh
Confidence 4556666654 347799999875 222 23356677777763 3578888887532211 00
Q ss_pred -------hcC--H------HHhccCC-ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHH
Q 005511 187 -------EKD--P------ALERRFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVS 235 (693)
Q Consensus 187 -------~l~--~------~l~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~ 235 (693)
.++ . ++..||. .+.|++++.++-.+|+..+.+. .++.++++.++.
T Consensus 193 dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~----~~l~~~~e~l~~ 253 (287)
T COG2607 193 DNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKH----FGLDISDEELHA 253 (287)
T ss_pred hCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHH----cCCCCCHHHHHH
Confidence 011 1 2334997 8999999999999999998874 667777765543
No 385
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.15 E-value=5.8e-12 Score=107.81 Aligned_cols=108 Identities=27% Similarity=0.333 Sum_probs=59.5
Q ss_pred CeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccc-cc-----cCCccc---chHHHHHHHHHHHHHhCCC
Q 005511 65 NPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGL-LV-----AGTKYR---GEFEERLKKLMEEIKQSDE 135 (693)
Q Consensus 65 ~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~-l~-----~~~~~~---g~~~~~l~~~~~~~~~~~~ 135 (693)
|+||.|+||+|||++|+++|+.+ +..+..+.+.. +. ...-+. +.++..-..++ .
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~----------~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~ 63 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSL----------GLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------T 63 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHT----------T--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------S
T ss_pred CEeeECCCccHHHHHHHHHHHHc----------CCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------h
Confidence 78999999999999999999998 55666665431 11 000000 00000000111 1
Q ss_pred eEEEEeccchhhhCCCCCChHhHHHHHhhhhcCC-------------CcEEEEEechHHHHhhhhcCHHHhccCC
Q 005511 136 IILFIDEVHTLIGAGAAEGAIDAANILKPSLARG-------------ELQCIGATTLDEYRKHIEKDPALERRFQ 197 (693)
Q Consensus 136 ~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~vI~~t~~~~~~~~~~l~~~l~~Rf~ 197 (693)
.|+++||+++..+. ++++|++.++.+ .+.||++.|+.+..+.+.++.+++.||-
T Consensus 64 ~ill~DEiNrappk--------tQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 64 NILLADEINRAPPK--------TQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp SEEEEETGGGS-HH--------HHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred ceeeecccccCCHH--------HHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 39999999998544 788898888643 3678999999988888899999999984
No 386
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.15 E-value=4.3e-09 Score=107.17 Aligned_cols=180 Identities=18% Similarity=0.205 Sum_probs=105.2
Q ss_pred CCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEE-ec----cc----cc--cCCcccch-HH---HHHHHH
Q 005511 62 TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITL-DM----GL----LV--AGTKYRGE-FE---ERLKKL 126 (693)
Q Consensus 62 ~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~-~~----~~----l~--~~~~~~g~-~~---~~l~~~ 126 (693)
....++|+||+|+||||+++.++..+.... ..+..+ +. .. +. -+.+..+. .. ..+...
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~-------~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~ 114 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQER-------VVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDF 114 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCCCC-------eEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Confidence 345688999999999999999998875321 111111 10 00 00 01111111 11 122222
Q ss_pred H-HHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhc----CC-CcEEEEEechHHHHhhhhc--CHHHhccCC-
Q 005511 127 M-EEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA----RG-ELQCIGATTLDEYRKHIEK--DPALERRFQ- 197 (693)
Q Consensus 127 ~-~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~----~~-~v~vI~~t~~~~~~~~~~l--~~~l~~Rf~- 197 (693)
+ .....+.+.+|+|||++.+... ..+.|..+.+ .. .+.+++++.+ .....+.. ...+.+|+.
T Consensus 115 l~~~~~~~~~~vliiDe~~~l~~~--------~~~~l~~l~~~~~~~~~~~~vvl~g~~-~~~~~l~~~~~~~l~~r~~~ 185 (269)
T TIGR03015 115 LIEQFAAGKRALLVVDEAQNLTPE--------LLEELRMLSNFQTDNAKLLQIFLVGQP-EFRETLQSPQLQQLRQRIIA 185 (269)
T ss_pred HHHHHhCCCCeEEEEECcccCCHH--------HHHHHHHHhCcccCCCCeEEEEEcCCH-HHHHHHcCchhHHHHhheee
Confidence 2 2233566789999999998432 3344433322 12 2345555544 33333321 235777875
Q ss_pred ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhhhhHHHHHhhH
Q 005511 198 PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSR 263 (693)
Q Consensus 198 ~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~a~~~ 263 (693)
.+.+++++.++...++...+..........+++++++.+++.+.|+ |+....++..+...
T Consensus 186 ~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~------p~~i~~l~~~~~~~ 245 (269)
T TIGR03015 186 SCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI------PRLINILCDRLLLS 245 (269)
T ss_pred eeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc------ccHHHHHHHHHHHH
Confidence 8899999999999999988765432334568999999999999887 35555555555443
No 387
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.14 E-value=5.5e-10 Score=114.94 Aligned_cols=152 Identities=18% Similarity=0.199 Sum_probs=103.8
Q ss_pred HHHHHHHHHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCC-CC--------------CCCCceEEEEeccccc----
Q 005511 50 QIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDV-PD--------------TIEGKKVITLDMGLLV---- 110 (693)
Q Consensus 50 ~~~~l~~~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~-~~--------------~~~~~~~~~~~~~~l~---- 110 (693)
..+++... ...-++.+||+||+|+||+++|+.+|+.+.+... +. ...+..+..+......
T Consensus 9 ~~~~l~~~-~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~ 87 (342)
T PRK06964 9 DWNRLQAL-RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAP 87 (342)
T ss_pred HHHHHHHh-cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccccccccc
Confidence 34455554 4455677789999999999999999999987431 10 1122334444332110
Q ss_pred -------------cCCc---c-cchHHHHHHHHHHHHH----hCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC-
Q 005511 111 -------------AGTK---Y-RGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR- 168 (693)
Q Consensus 111 -------------~~~~---~-~g~~~~~l~~~~~~~~----~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~- 168 (693)
.+.+ . ..-..+.++.+...+. .+...|++||++|.|.. .+.|.|++.+|.
T Consensus 88 ~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~--------~AaNaLLKtLEEP 159 (342)
T PRK06964 88 GAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV--------AAANALLKTLEEP 159 (342)
T ss_pred ccccccccchhhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH--------HHHHHHHHHhcCC
Confidence 0000 0 0122345666665553 23456999999999954 478999999984
Q ss_pred -CCcEEEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHH
Q 005511 169 -GELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKG 215 (693)
Q Consensus 169 -~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~ 215 (693)
..+++|++|+.++ .+.|.++||++.+.|++|+.++..+.|..
T Consensus 160 p~~t~fiL~t~~~~-----~LLpTI~SRcq~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 160 PPGTVFLLVSARID-----RLLPTILSRCRQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred CcCcEEEEEECChh-----hCcHHHHhcCEEEEecCCCHHHHHHHHHH
Confidence 4577888888877 78999999999999999999998888763
No 388
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.14 E-value=1.9e-09 Score=103.51 Aligned_cols=116 Identities=24% Similarity=0.191 Sum_probs=85.8
Q ss_pred CCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCC-CcEEEEEechHH--------HHhhhhcCHHHhccCCccccCCC
Q 005511 134 DEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG-ELQCIGATTLDE--------YRKHIEKDPALERRFQPVKVPEP 204 (693)
Q Consensus 134 ~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~-~v~vI~~t~~~~--------~~~~~~l~~~l~~Rf~~i~~~~p 204 (693)
-|.||||||+|.| +.+....|.+.+++. ..+||+++|+-- ...-..+++.++.|+-.|..-.+
T Consensus 296 vPGVLFIDEVhML--------DiEcFTyL~kalES~iaPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y 367 (456)
T KOG1942|consen 296 VPGVLFIDEVHML--------DIECFTYLHKALESPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPY 367 (456)
T ss_pred cCcceEeeehhhh--------hhHHHHHHHHHhcCCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccC
Confidence 3789999999998 456788888888854 456777777421 11122578899999998888889
Q ss_pred CHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhhhhHHHHHhhHHHH
Q 005511 205 SVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRL 266 (693)
Q Consensus 205 ~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~a~~~~~~ 266 (693)
+.++.++|++...+ ..++.+++++++.++.+.... .-+.++.++.-|.-.+..
T Consensus 368 ~~~e~r~Ii~~Ra~----~E~l~~~e~a~~~l~~~gt~t-----sLRy~vqLl~p~~~~ak~ 420 (456)
T KOG1942|consen 368 DEEEIRQIIKIRAQ----VEGLQVEEEALDLLAEIGTST-----SLRYAVQLLTPASILAKT 420 (456)
T ss_pred CHHHHHHHHHHHHh----hhcceecHHHHHHHHhhccch-----hHHHHHHhcCHHHHHHHH
Confidence 99999999997766 477899999999998865433 236677777665544443
No 389
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.13 E-value=1.4e-09 Score=121.45 Aligned_cols=123 Identities=15% Similarity=0.220 Sum_probs=79.1
Q ss_pred CCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCC-----------------------CcEEEEEechHHHHhhhhcC
Q 005511 133 SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG-----------------------ELQCIGATTLDEYRKHIEKD 189 (693)
Q Consensus 133 ~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~-----------------------~v~vI~~t~~~~~~~~~~l~ 189 (693)
.++++|||||++.|.+ ..+..|++.++.+ ++.+|+++|+.... .++
T Consensus 216 AngGtL~Ldei~~L~~--------~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~---~l~ 284 (608)
T TIGR00764 216 AHKGVLYIDEIKTMPL--------EVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLE---GMH 284 (608)
T ss_pred CCCCEEEEEChHhCCH--------HHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHh---hcC
Confidence 3457999999998843 3566676666422 46789999986432 689
Q ss_pred HHHhccCC---c-cccC---CCCHHHHHHHHHHHHHhHhhh-cCcccChHHHHHHHHhhhhhhcccCC----chhhhhHH
Q 005511 190 PALERRFQ---P-VKVP---EPSVDETIQILKGLRERYEIH-HKLRYTDEALVSAAQLSYQYISDRFL----PDKAIDLI 257 (693)
Q Consensus 190 ~~l~~Rf~---~-i~~~---~p~~~e~~~il~~~~~~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~----~~~~~~ll 257 (693)
+.|++||. . +.|+ +.+.+.+.++++.+....... .-..++++++..+.+.+.+..+.+.. .+...+++
T Consensus 285 ~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~ll 364 (608)
T TIGR00764 285 PALRSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLV 364 (608)
T ss_pred HHHHHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHH
Confidence 99999997 1 3332 234556655655444433222 22368899999998877766554433 56777788
Q ss_pred HHHhhHHHH
Q 005511 258 DEAGSRVRL 266 (693)
Q Consensus 258 ~~a~~~~~~ 266 (693)
+.|...+..
T Consensus 365 R~A~~iA~~ 373 (608)
T TIGR00764 365 RAAGDIAKS 373 (608)
T ss_pred HHHHHHHHh
Confidence 887554433
No 390
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.12 E-value=1.6e-09 Score=124.41 Aligned_cols=192 Identities=19% Similarity=0.315 Sum_probs=115.0
Q ss_pred hhhhhhhc--CCCCCccCCHHHHHHHHHHHhc--CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEec
Q 005511 31 NLTKLAEE--GKLDPVVGRQPQIERVVQILGR--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM 106 (693)
Q Consensus 31 ~l~~~~~~--~~~~~iiG~~~~~~~l~~~l~~--~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 106 (693)
.+++.... .+|++++|++..++.+.+.+.. ....+|||+|++|||||++|+++...... .+.+++.++|
T Consensus 363 ~lt~~L~~~n~~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r-------~~~~~v~i~c 435 (686)
T PRK15429 363 ALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGR-------NNRRMVKMNC 435 (686)
T ss_pred HHHHhhhhccccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCC-------CCCCeEEEec
Confidence 34444443 4788999999999988765553 45678999999999999999999876532 3678999998
Q ss_pred cccccCC---c----ccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCC----------
Q 005511 107 GLLVAGT---K----YRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG---------- 169 (693)
Q Consensus 107 ~~l~~~~---~----~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~---------- 169 (693)
..+.... . ..+.+...............+++|||||++.+. .+.+..|...++.+
T Consensus 436 ~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~--------~~~Q~~L~~~l~~~~~~~~g~~~~ 507 (686)
T PRK15429 436 AAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMP--------LELQPKLLRVLQEQEFERLGSNKI 507 (686)
T ss_pred ccCChhHhhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhCC--------HHHHHHHHHHHHhCCEEeCCCCCc
Confidence 7653210 0 000000000111122234455699999999984 44677777777532
Q ss_pred ---CcEEEEEechHHHH--hhhhcCHHHhccCCccccCCCCHHHHHH----HHHHHHHhHhhhcC--c-ccChHHHHHHH
Q 005511 170 ---ELQCIGATTLDEYR--KHIEKDPALERRFQPVKVPEPSVDETIQ----ILKGLRERYEIHHK--L-RYTDEALVSAA 237 (693)
Q Consensus 170 ---~v~vI~~t~~~~~~--~~~~l~~~l~~Rf~~i~~~~p~~~e~~~----il~~~~~~~~~~~~--~-~~~~~~l~~l~ 237 (693)
++.+|++|+..-.. ..-.+...+..|+..+.+..|+-.+|.+ +++.++.++....+ + .++++++..+.
T Consensus 508 ~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~ 587 (686)
T PRK15429 508 IQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLS 587 (686)
T ss_pred ccceEEEEEeCCCCHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHH
Confidence 36889988764311 1112445566677755556666555544 44444444322211 1 35556555443
No 391
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.12 E-value=5.1e-10 Score=117.25 Aligned_cols=150 Identities=22% Similarity=0.318 Sum_probs=93.1
Q ss_pred CCCccCCHHHHHHHHHHHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEec----cccccCCccc
Q 005511 41 LDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM----GLLVAGTKYR 116 (693)
Q Consensus 41 ~~~iiG~~~~~~~l~~~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~ 116 (693)
++++++.++.++.+...+.. ..+++|+||||||||++|+.+|..+.....+ ....++.+.. .++..+....
T Consensus 174 l~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l~~~~~~---~~v~~VtFHpsySYeDFI~G~rP~ 248 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLLTGEKAP---QRVNMVQFHQSYSYEDFIQGYRPN 248 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHhcCCccc---ceeeEEeecccccHHHHhcccCCC
Confidence 67788889999999888774 6899999999999999999999988432111 0112222221 1222222111
Q ss_pred ch-H---HHHHHHHHHHHHh--CCCeEEEEeccchhhhCCCCCChHhHHHHHhhhh------------------------
Q 005511 117 GE-F---EERLKKLMEEIKQ--SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSL------------------------ 166 (693)
Q Consensus 117 g~-~---~~~l~~~~~~~~~--~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l------------------------ 166 (693)
+. . ...+..++..|.. ..+.+|||||+++-..+. +..-+..++
T Consensus 249 ~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~k-------iFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~ 321 (459)
T PRK11331 249 GVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSK-------VFGEVMMLMEHDKRGENWSVPLTYSENDEERFY 321 (459)
T ss_pred CCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHH-------hhhhhhhhccccccccccceeeecccccccccc
Confidence 10 0 1123334455543 357899999999865321 011111111
Q ss_pred cCCCcEEEEEechHHHHhhhhcCHHHhccCCccccCC
Q 005511 167 ARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPE 203 (693)
Q Consensus 167 ~~~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~ 203 (693)
-...+.+|+|+|..+- ....+|.+++|||..|++.+
T Consensus 322 iP~Nl~IIgTMNt~Dr-s~~~lD~AlrRRF~fi~i~p 357 (459)
T PRK11331 322 VPENVYIIGLMNTADR-SLAVVDYALRRRFSFIDIEP 357 (459)
T ss_pred CCCCeEEEEecCcccc-chhhccHHHHhhhheEEecC
Confidence 1345889999998763 23348999999999887775
No 392
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.12 E-value=1.3e-09 Score=111.11 Aligned_cols=149 Identities=16% Similarity=0.150 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHhcCCCCC-eEEECCCCChHHHHHHHHHHHHhcCCCCC-------------CCCCceEEEEeccccccCC
Q 005511 48 QPQIERVVQILGRRTKNN-PCLIGEPGVGKTAIAEGLAQRIASGDVPD-------------TIEGKKVITLDMGLLVAGT 113 (693)
Q Consensus 48 ~~~~~~l~~~l~~~~~~~-vLl~Gp~GtGKT~la~~la~~l~~~~~~~-------------~~~~~~~~~~~~~~l~~~~ 113 (693)
.+..+++...+.....+| +||+||.|+||+++|+.+|+.+.+...+. ...+..++.+....- +
T Consensus 9 ~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~--~- 85 (319)
T PRK06090 9 VPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKE--G- 85 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcC--C-
Confidence 345566777776655554 67899999999999999999998743211 112234444443210 0
Q ss_pred cccchHHHHHHHHHHHHH----hCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC--CCcEEEEEechHHHHhhhh
Q 005511 114 KYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--GELQCIGATTLDEYRKHIE 187 (693)
Q Consensus 114 ~~~g~~~~~l~~~~~~~~----~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~~t~~~~~~~~~~ 187 (693)
+ ....+.++.+...+. .+...|++||++|.|.. .+.|.|++.+|. ..+.+|.+|+.++ .
T Consensus 86 ~--~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~--------~AaNaLLKtLEEPp~~t~fiL~t~~~~-----~ 150 (319)
T PRK06090 86 K--SITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNE--------SASNALLKTLEEPAPNCLFLLVTHNQK-----R 150 (319)
T ss_pred C--cCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCH--------HHHHHHHHHhcCCCCCeEEEEEECChh-----h
Confidence 0 112344555544442 23457999999999954 478999999984 4477888888776 6
Q ss_pred cCHHHhccCCccccCCCCHHHHHHHHH
Q 005511 188 KDPALERRFQPVKVPEPSVDETIQILK 214 (693)
Q Consensus 188 l~~~l~~Rf~~i~~~~p~~~e~~~il~ 214 (693)
+-|.++||+..+.|++|+.++..+.+.
T Consensus 151 lLpTI~SRCq~~~~~~~~~~~~~~~L~ 177 (319)
T PRK06090 151 LLPTIVSRCQQWVVTPPSTAQAMQWLK 177 (319)
T ss_pred ChHHHHhcceeEeCCCCCHHHHHHHHH
Confidence 899999999999999999998887775
No 393
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.11 E-value=8.2e-11 Score=109.54 Aligned_cols=109 Identities=24% Similarity=0.368 Sum_probs=71.5
Q ss_pred CCCCeEEECCCCChHHHHHHHHHHHHh-cCCCCCCCCCceEEEEeccccccCCcccchHHHHHHHHHHH----HHhCCCe
Q 005511 62 TKNNPCLIGEPGVGKTAIAEGLAQRIA-SGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEE----IKQSDEI 136 (693)
Q Consensus 62 ~~~~vLl~Gp~GtGKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~----~~~~~~~ 136 (693)
+..+++|+||+|||||.+|+++|+.+. . ...+++.++++.+..+.. ....+..++.. .......
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~-------~~~~~~~~d~s~~~~~~~----~~~~~~~l~~~~~~~v~~~~~g 70 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVG-------SERPLIRIDMSEYSEGDD----VESSVSKLLGSPPGYVGAEEGG 70 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-S-------SCCEEEEEEGGGHCSHHH----CSCHCHHHHHHTTCHHHHHHHT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccC-------CccchHHHhhhcccccch----HHhhhhhhhhcccceeeccchh
Confidence 456889999999999999999999994 2 245899999988875111 01111222221 1111223
Q ss_pred EEEEeccchhhhCCCCCC---hHhHHHHHhhhhcCC-------------CcEEEEEechHH
Q 005511 137 ILFIDEVHTLIGAGAAEG---AIDAANILKPSLARG-------------ELQCIGATTLDE 181 (693)
Q Consensus 137 vL~iDEid~l~~~~~~~~---~~~~~~~L~~~l~~~-------------~v~vI~~t~~~~ 181 (693)
|+|+||||+..+...... ...+++.|+++++.+ ++++|+|+|-..
T Consensus 71 VVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 71 VVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp EEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred hhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 999999999987422221 235788899888632 367888888543
No 394
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.11 E-value=2e-10 Score=112.06 Aligned_cols=157 Identities=20% Similarity=0.263 Sum_probs=106.7
Q ss_pred HHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCC-Ccc--eeeeccccccchh
Q 005511 373 TLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGS-EEA--MIRLDMSEFMERH 449 (693)
Q Consensus 373 ~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~-~~~--~~~~~~~~~~~~~ 449 (693)
.....++++++.+..+.+..... + ..|+|||||||||||+...+.|..+++. +.. +..++.++-.+.+
T Consensus 38 ~~l~dv~~~~ei~st~~~~~~~~-------~--lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rgid 108 (360)
T KOG0990|consen 38 PFLGIVIKQEPIWSTENRYSGMP-------G--LPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRGID 108 (360)
T ss_pred chhhhHhcCCchhhHHHHhccCC-------C--CCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccCCc
Confidence 34456778888877776652211 1 2279999999999999999999998762 111 2222222221110
Q ss_pred hhhhhcCCCCCCcCcCccchhhHHHH-------cCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEE
Q 005511 450 TVSKLIGSPPGYVGYTEGGQLTEAVR-------RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLL 522 (693)
Q Consensus 450 ~~~~l~g~~~~~~g~~~~~~l~~~~~-------~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i 522 (693)
. +- ..-.++...+ .+....+++||+|.+..+.||+|.+.++.. ..|++|
T Consensus 109 ~-----------vr--~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek~-----------t~n~rF 164 (360)
T KOG0990|consen 109 P-----------VR--QQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEKY-----------TANTRF 164 (360)
T ss_pred c-----------hH--HHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHHh-----------ccceEE
Confidence 0 00 0011222222 235679999999999999999999988773 357788
Q ss_pred EEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHHHH
Q 005511 523 IMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLK 599 (693)
Q Consensus 523 I~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l~ 599 (693)
.+-+|.... ..|++.+|| ..+.|.|++..+........++
T Consensus 165 ~ii~n~~~k------------------------------------i~pa~qsRc-trfrf~pl~~~~~~~r~shi~e 204 (360)
T KOG0990|consen 165 ATISNPPQK------------------------------------IHPAQQSRC-TRFRFAPLTMAQQTERQSHIRE 204 (360)
T ss_pred EEeccChhh------------------------------------cCchhhccc-ccCCCCCCChhhhhhHHHHHHh
Confidence 888886654 679999999 8899999999888888776654
No 395
>PF10431 ClpB_D2-small: C-terminal, D2-small domain, of ClpB protein ; InterPro: IPR019489 Most Clp ATPases form complexes with peptidase subunits and are involved in protein degradation, though some, such as ClpB, do not associate with peptidases and are involved in protein disaggregation []. This entry represents the C-terminal domain of Clp ATPases, often referred to as the D2-small domain, which forms a mixed alpha-beta structure. Compared with the adjacent AAA D1-small domain (IPR003959 from INTERPRO) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit, thereby providing enough binding energy to stabilise the functional assembly [].; PDB: 3HWS_A 3HTE_F 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 3PXI_A 1R6B_X ....
Probab=99.11 E-value=3.8e-10 Score=91.29 Aligned_cols=81 Identities=46% Similarity=0.779 Sum_probs=75.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHHHHHHHHHHHHHhcccCCCCEEE
Q 005511 585 LTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVI 664 (693)
Q Consensus 585 l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~~~l~~~~l~~~~~~~~~~~ 664 (693)
|+.+++.+|++..|.++.+++...|+.+.+++++.++|++.+|.+.+|||+|++.|++.+..++++.++.+.+.+|++|+
T Consensus 1 L~~~~l~~I~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~~la~~il~~~~~~g~~v~ 80 (81)
T PF10431_consen 1 LSEEDLEKIADLQLKKLNERLKEKGIELEFDDAVVDYLAEKGYDPEYGARPLRRIIEREIEPPLADAILSGKIKEGDTVR 80 (81)
T ss_dssp --HHHHHHHHHSHHHHHHHHHHHTTEEEEE-HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHHHHHHHSCSCTTCEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCeEEecHHHHHHHHHhCcccCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcCEee
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred E
Q 005511 665 V 665 (693)
Q Consensus 665 v 665 (693)
|
T Consensus 81 v 81 (81)
T PF10431_consen 81 V 81 (81)
T ss_dssp E
T ss_pred C
Confidence 6
No 396
>PRK09087 hypothetical protein; Validated
Probab=99.11 E-value=1.7e-09 Score=105.89 Aligned_cols=152 Identities=18% Similarity=0.235 Sum_probs=96.7
Q ss_pred EEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCCcCcCccchhhHHHHcCCCEEEEEccC
Q 005511 408 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEI 487 (693)
Q Consensus 408 ~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEi 487 (693)
.++|+||+|+|||++++++++.. + ...++...+.. .+...+. .++|+||++
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~---~--~~~i~~~~~~~---------------------~~~~~~~---~~~l~iDDi 96 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKS---D--ALLIHPNEIGS---------------------DAANAAA---EGPVLIEDI 96 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhc---C--CEEecHHHcch---------------------HHHHhhh---cCeEEEECC
Confidence 49999999999999999988763 2 22233222211 1111111 258999999
Q ss_pred cccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhc
Q 005511 488 EKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQY 567 (693)
Q Consensus 488 d~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~ 567 (693)
+.+.. .+..|..++..-. -.+..+|++++..+..+. .
T Consensus 97 ~~~~~-~~~~lf~l~n~~~----------~~g~~ilits~~~p~~~~--------------------------------~ 133 (226)
T PRK09087 97 DAGGF-DETGLFHLINSVR----------QAGTSLLMTSRLWPSSWN--------------------------------V 133 (226)
T ss_pred CCCCC-CHHHHHHHHHHHH----------hCCCeEEEECCCChHHhc--------------------------------c
Confidence 98742 2444555443210 012246677765443221 0
Q ss_pred CchhHhhccC--cEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHHH
Q 005511 568 FRPEFLNRLD--EMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRL 643 (693)
Q Consensus 568 ~~~~l~~R~~--~~v~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~ 643 (693)
+.|+|.+||. .++.+.+++.+++.+++++.++. .+ +.++++++++|++. +..+ .+.+...+.++
T Consensus 134 ~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~-------~~--~~l~~ev~~~La~~-~~r~--~~~l~~~l~~L 199 (226)
T PRK09087 134 KLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFAD-------RQ--LYVDPHVVYYLVSR-MERS--LFAAQTIVDRL 199 (226)
T ss_pred ccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHH-hhhh--HHHHHHHHHHH
Confidence 3589999995 57999999999999999887764 13 56999999999985 4433 55555555544
No 397
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.10 E-value=1.7e-10 Score=114.71 Aligned_cols=190 Identities=21% Similarity=0.325 Sum_probs=105.3
Q ss_pred ccCCHHHHHHHHHHHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEec-c--------c------
Q 005511 44 VVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM-G--------L------ 108 (693)
Q Consensus 44 iiG~~~~~~~l~~~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~-~--------~------ 108 (693)
++||+.+++.|.+.+.......++++||.|+|||++++.+.+.+.... ..++++.. . .
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~-------~~~~y~~~~~~~~~~~~~~~~~~~~ 73 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKG-------YKVVYIDFLEESNESSLRSFIEETS 73 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--E-------ECCCHHCCTTBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcC-------CcEEEEecccchhhhHHHHHHHHHH
Confidence 589999999999999887788999999999999999999999884311 01111111 0 0
Q ss_pred --------cc---cCC-------cccchHHHHHHHHHHHHHhC-CCeEEEEeccchhh-hCCC-CCChHhHHHHHhhhhc
Q 005511 109 --------LV---AGT-------KYRGEFEERLKKLMEEIKQS-DEIILFIDEVHTLI-GAGA-AEGAIDAANILKPSLA 167 (693)
Q Consensus 109 --------l~---~~~-------~~~g~~~~~l~~~~~~~~~~-~~~vL~iDEid~l~-~~~~-~~~~~~~~~~L~~~l~ 167 (693)
+. ... .........+..++..+.+. .+.||+|||++.+. .... ........+.+.....
T Consensus 74 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~ 153 (234)
T PF01637_consen 74 LADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS 153 (234)
T ss_dssp HHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc
Confidence 00 000 00122334455666666543 34899999999997 2111 1111223333334334
Q ss_pred CCCcEEEEEechHHHH-hhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhh
Q 005511 168 RGELQCIGATTLDEYR-KHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQY 243 (693)
Q Consensus 168 ~~~v~vI~~t~~~~~~-~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 243 (693)
...+.+|.+++...+. ....-...+..|+..+.+++.+.++..+++....... .++.++++.++.+..++.|+
T Consensus 154 ~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~gG~ 227 (234)
T PF01637_consen 154 QQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL---IKLPFSDEDIEEIYSLTGGN 227 (234)
T ss_dssp -TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-
T ss_pred cCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh---hcccCCHHHHHHHHHHhCCC
Confidence 5566666666654433 2233445566788789999999999999999876642 22245899999999999887
No 398
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.09 E-value=2.5e-09 Score=118.16 Aligned_cols=176 Identities=21% Similarity=0.295 Sum_probs=114.0
Q ss_pred CCCCccCCHHHHHHHHHHHhc--CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCcccc
Q 005511 40 KLDPVVGRQPQIERVVQILGR--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRG 117 (693)
Q Consensus 40 ~~~~iiG~~~~~~~l~~~l~~--~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 117 (693)
.++.++|+...++++.+.+.. ....+|||+|++||||+++|+++...... .+.+++.++|..+...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r-------~~~p~v~v~c~~~~~~----- 252 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPR-------ADKPLVYLNCAALPES----- 252 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCc-------CCCCeEEEEcccCChH-----
Confidence 577899999999988887654 55689999999999999999999987632 2568999999876321
Q ss_pred hHHHHHHHHHH---------------HHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCC-------------
Q 005511 118 EFEERLKKLME---------------EIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG------------- 169 (693)
Q Consensus 118 ~~~~~l~~~~~---------------~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~------------- 169 (693)
..+ ..+|. ......++.|||||++.|. .+.+..|...++.+
T Consensus 253 ~~e---~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~--------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 321 (509)
T PRK05022 253 LAE---SELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELP--------LALQAKLLRVLQYGEIQRVGSDRSLRV 321 (509)
T ss_pred HHH---HHhcCccccccCCCcccCCcchhhcCCCEEEecChhhCC--------HHHHHHHHHHHhcCCEeeCCCCcceec
Confidence 000 01111 1223456689999999994 34677777777643
Q ss_pred CcEEEEEechHHHH--hhhhcCHHHhccCCccccCCCCHHHH----HHHHHHHHHhHhhh---cCcccChHHHHHHHH
Q 005511 170 ELQCIGATTLDEYR--KHIEKDPALERRFQPVKVPEPSVDET----IQILKGLRERYEIH---HKLRYTDEALVSAAQ 238 (693)
Q Consensus 170 ~v~vI~~t~~~~~~--~~~~l~~~l~~Rf~~i~~~~p~~~e~----~~il~~~~~~~~~~---~~~~~~~~~l~~l~~ 238 (693)
++.+|++|+..-.. ..-.+.+.|..|+..+.+..|+..+| ..+++.+++++... ....++++++..+.+
T Consensus 322 ~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~ 399 (509)
T PRK05022 322 DVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLA 399 (509)
T ss_pred ceEEEEecCCCHHHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh
Confidence 36889998864321 11125667777887555555555444 44445555443322 234566666665544
No 399
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.08 E-value=3.8e-11 Score=108.92 Aligned_cols=111 Identities=27% Similarity=0.403 Sum_probs=69.8
Q ss_pred CeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCcccc-------hHHHHHHHHHHHHHhCCCeE
Q 005511 65 NPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRG-------EFEERLKKLMEEIKQSDEII 137 (693)
Q Consensus 65 ~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~~l~~~~~~~~~~~~~v 137 (693)
+|||+||||||||++++.+|+.+ +.+++.+.++.........| .....-..+...+. .+.+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~----------~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~--~~~i 68 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL----------GRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR--KGGI 68 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH----------TCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH--EEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHh----------hcceEEEEeccccccccceeeeeeccccccccccccccccc--ceeE
Confidence 58999999999999999999999 67787877654322111000 00000000111111 4679
Q ss_pred EEEeccchhhhCCCCCChHhHHHHHhhhhcC---------------C------CcEEEEEechHHHHhhhhcCHHHhccC
Q 005511 138 LFIDEVHTLIGAGAAEGAIDAANILKPSLAR---------------G------ELQCIGATTLDEYRKHIEKDPALERRF 196 (693)
Q Consensus 138 L~iDEid~l~~~~~~~~~~~~~~~L~~~l~~---------------~------~v~vI~~t~~~~~~~~~~l~~~l~~Rf 196 (693)
++|||++... .++++.|..+++. . .+.+|+++|+.. .....+++++++||
T Consensus 69 l~lDEin~a~--------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~-~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 69 LVLDEINRAP--------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD-KGRKELSPALLDRF 139 (139)
T ss_dssp EEESSCGG----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST---TTTTCHHHHTT-
T ss_pred EEECCcccCC--------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC-CCcCcCCHHHHhhC
Confidence 9999999873 3467777766642 1 279999999887 34446899999998
No 400
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.08 E-value=1.6e-09 Score=100.51 Aligned_cols=114 Identities=22% Similarity=0.352 Sum_probs=78.0
Q ss_pred ccCCHHHHHHHHHHHhc--CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCcccchHHH
Q 005511 44 VVGRQPQIERVVQILGR--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEE 121 (693)
Q Consensus 44 iiG~~~~~~~l~~~l~~--~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 121 (693)
|||.+..++++.+.+.. ..+.+|||+|++||||+.+|+++.+.... .+.+++.++|+.+... .
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r-------~~~pfi~vnc~~~~~~--------~ 65 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPR-------KNGPFISVNCAALPEE--------L 65 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTT-------TTS-EEEEETTTS-HH--------H
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhc-------ccCCeEEEehhhhhcc--------h
Confidence 68888899988887664 56689999999999999999999885432 3678999999765311 0
Q ss_pred HHHHHH---------------HHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCC-------------CcEE
Q 005511 122 RLKKLM---------------EEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG-------------ELQC 173 (693)
Q Consensus 122 ~l~~~~---------------~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~v 173 (693)
.-..+| ..+.+...+.|||||++.|. .+.+..|.++++.+ ++.+
T Consensus 66 ~e~~LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~--------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~Ri 137 (168)
T PF00158_consen 66 LESELFGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDLP--------PELQAKLLRVLEEGKFTRLGSDKPVPVDVRI 137 (168)
T ss_dssp HHHHHHEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS---------HHHHHHHHHHHHHSEEECCTSSSEEE--EEE
T ss_pred hhhhhhccccccccccccccCCceeeccceEEeecchhhhH--------HHHHHHHHHHHhhchhccccccccccccceE
Confidence 111122 22334556699999999994 44788888888632 4789
Q ss_pred EEEechH
Q 005511 174 IGATTLD 180 (693)
Q Consensus 174 I~~t~~~ 180 (693)
|++|+.+
T Consensus 138 I~st~~~ 144 (168)
T PF00158_consen 138 IASTSKD 144 (168)
T ss_dssp EEEESS-
T ss_pred EeecCcC
Confidence 9999864
No 401
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.06 E-value=7.8e-09 Score=116.57 Aligned_cols=164 Identities=15% Similarity=0.123 Sum_probs=102.6
Q ss_pred CCCCccCCHHHHHHHHHHHhcCC---------------------CCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCC
Q 005511 40 KLDPVVGRQPQIERVVQILGRRT---------------------KNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEG 98 (693)
Q Consensus 40 ~~~~iiG~~~~~~~l~~~l~~~~---------------------~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~ 98 (693)
-...|.|++.+++.+.-.+.... ..||||+|+||||||.+++++++....... ..|
T Consensus 448 iaP~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~y---tsG 524 (915)
T PTZ00111 448 FAPSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIY---TSG 524 (915)
T ss_pred hCCeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCcccc---CCC
Confidence 34578999999998766553321 128999999999999999999986532211 012
Q ss_pred ceEEEEecccccc-CCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCC--------
Q 005511 99 KKVITLDMGLLVA-GTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG-------- 169 (693)
Q Consensus 99 ~~~~~~~~~~l~~-~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------- 169 (693)
.....+.+..... .....|.+ .+. -+.+.....++++|||++.+.+ ..+..|..+|+.+
T Consensus 525 ~~~s~vgLTa~~~~~d~~tG~~--~le--~GaLvlAdgGtL~IDEidkms~--------~~Q~aLlEaMEqqtIsI~KaG 592 (915)
T PTZ00111 525 KSSSSVGLTASIKFNESDNGRA--MIQ--PGAVVLANGGVCCIDELDKCHN--------ESRLSLYEVMEQQTVTIAKAG 592 (915)
T ss_pred CCCccccccchhhhcccccCcc--ccc--CCcEEEcCCCeEEecchhhCCH--------HHHHHHHHHHhCCEEEEecCC
Confidence 2233333222110 00001111 000 0112234556999999999843 3677777777643
Q ss_pred -------CcEEEEEechHHHH--------hhhhcCHHHhccCC--ccccCCCCHHHHHHHHHHHHH
Q 005511 170 -------ELQCIGATTLDEYR--------KHIEKDPALERRFQ--PVKVPEPSVDETIQILKGLRE 218 (693)
Q Consensus 170 -------~v~vI~~t~~~~~~--------~~~~l~~~l~~Rf~--~i~~~~p~~~e~~~il~~~~~ 218 (693)
.+.||+++|+.... .-+.+++++++||+ .+.++.|+.+.=..|-+++++
T Consensus 593 i~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~ 658 (915)
T PTZ00111 593 IVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAK 658 (915)
T ss_pred cceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHHH
Confidence 36899999985321 34568999999998 568888888766677666554
No 402
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.06 E-value=3.3e-09 Score=118.29 Aligned_cols=187 Identities=18% Similarity=0.179 Sum_probs=114.6
Q ss_pred CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCcccchH--HHHHHH---HH--HHHHhC
Q 005511 61 RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEF--EERLKK---LM--EEIKQS 133 (693)
Q Consensus 61 ~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~~l~~---~~--~~~~~~ 133 (693)
+.-.+|||.|+||||||++++++++.+.. ..+++.+..+... ....|.. ...+.. .+ ..+.+.
T Consensus 14 p~~g~vLl~G~~GtgKs~lar~l~~~~~~--------~~pfv~i~~~~t~--d~L~G~idl~~~~~~g~~~~~~G~L~~A 83 (589)
T TIGR02031 14 PSLGGVAIRARAGTGKTALARALAEILPP--------IMPFVELPLGVTE--DRLIGGIDVEESLAGGQRVTQPGLLDEA 83 (589)
T ss_pred CCcceEEEEcCCCcHHHHHHHHHHHhCCc--------CCCeEecCcccch--hhcccchhhhhhhhcCcccCCCCCeeeC
Confidence 44679999999999999999999987732 1234444421110 0001110 000000 00 011224
Q ss_pred CCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCC---------------cEEEEEechHHHHhhhhcCHHHhccCC-
Q 005511 134 DEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGE---------------LQCIGATTLDEYRKHIEKDPALERRFQ- 197 (693)
Q Consensus 134 ~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~---------------v~vI~~t~~~~~~~~~~l~~~l~~Rf~- 197 (693)
+..+|||||++.+.+ ..++.|...|+.+. +.+|+++|+.+..+ .+.+++..||.
T Consensus 84 ~~GvL~lDEi~rl~~--------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g--~L~~~LldRf~l 153 (589)
T TIGR02031 84 PRGVLYVDMANLLDD--------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGG--GLPDHLLDRLAL 153 (589)
T ss_pred CCCcEeccchhhCCH--------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccC--CCCHHHHHhccC
Confidence 456999999999954 47888888886543 68888888764222 57899999997
Q ss_pred cccc-CCCCHHHHHHHHHHHHHhH-------------------hhhcCcccChHHHHHHHHhhhhhhcccCCchhhhhHH
Q 005511 198 PVKV-PEPSVDETIQILKGLRERY-------------------EIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLI 257 (693)
Q Consensus 198 ~i~~-~~p~~~e~~~il~~~~~~~-------------------~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll 257 (693)
.+.+ ..|+.++|.+|++.....+ .....+.++++.+..++.++..+- ...++..+.++
T Consensus 154 ~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~g--v~s~Ra~i~~~ 231 (589)
T TIGR02031 154 HVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLG--ISGHRADLFAV 231 (589)
T ss_pred eeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcC--CCCccHHHHHH
Confidence 4544 4556778888887654221 122345677777777777664331 11256677777
Q ss_pred HHHhhHHHHhhc
Q 005511 258 DEAGSRVRLRHA 269 (693)
Q Consensus 258 ~~a~~~~~~~~~ 269 (693)
+.|.+.+.++..
T Consensus 232 r~ArA~Aal~gr 243 (589)
T TIGR02031 232 RAAKAHAALHGR 243 (589)
T ss_pred HHHHHHHHHhCC
Confidence 777777666543
No 403
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.05 E-value=2.1e-09 Score=116.64 Aligned_cols=155 Identities=20% Similarity=0.235 Sum_probs=96.2
Q ss_pred CCCCCccCCHHHHHHHHHHHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEecc-cc--------
Q 005511 39 GKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMG-LL-------- 109 (693)
Q Consensus 39 ~~~~~iiG~~~~~~~l~~~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~-~l-------- 109 (693)
.+|++++|++..++.+...+. ...+++|+||||||||++++.++..+.... +...+....- .+
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~--~g~~vlliG~pGsGKTtlar~l~~llp~~~------~~~~le~~~i~s~~g~~~~~~ 260 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAA--GGHNLLLFGPPGSGKTMLASRLQGILPPLT------NEEAIETARIWSLVGKLIDRK 260 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhcc--CCCEEEEEecCCCCHHHHHHHHhcccCCCC------CcEEEeccccccchhhhcccc
Confidence 378899999999887776654 457899999999999999999997663211 1111111100 00
Q ss_pred -ccCCcccc----h-HHHHH----HHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCC----------
Q 005511 110 -VAGTKYRG----E-FEERL----KKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG---------- 169 (693)
Q Consensus 110 -~~~~~~~g----~-~~~~l----~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~---------- 169 (693)
....+++. . ....+ ...-..+....+.+|||||++.+. ...++.|++.|+.+
T Consensus 261 ~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~--------~~~~~~L~~~LE~~~v~i~r~g~~ 332 (499)
T TIGR00368 261 QIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFK--------RSVLDALREPIEDGSISISRASAK 332 (499)
T ss_pred ccccCCccccccccchhhhhCCccccchhhhhccCCCeEecCChhhCC--------HHHHHHHHHHHHcCcEEEEecCcc
Confidence 00000000 0 00000 000112334456799999999984 44788888888654
Q ss_pred -----CcEEEEEechHHHHh------------------hhhcCHHHhccCC-ccccCCCCHHHH
Q 005511 170 -----ELQCIGATTLDEYRK------------------HIEKDPALERRFQ-PVKVPEPSVDET 209 (693)
Q Consensus 170 -----~v~vI~~t~~~~~~~------------------~~~l~~~l~~Rf~-~i~~~~p~~~e~ 209 (693)
.+.+|+++|+-+... ...++..|++||+ .+.++.++.+++
T Consensus 333 ~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l 396 (499)
T TIGR00368 333 IFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKL 396 (499)
T ss_pred eeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHH
Confidence 368999998642100 1147889999999 889998876643
No 404
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.05 E-value=3e-09 Score=110.08 Aligned_cols=205 Identities=20% Similarity=0.260 Sum_probs=122.8
Q ss_pred CCCCccCCHHHHHHHHHHHhc--CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCcc--
Q 005511 40 KLDPVVGRQPQIERVVQILGR--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKY-- 115 (693)
Q Consensus 40 ~~~~iiG~~~~~~~l~~~l~~--~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 115 (693)
.++++||.+...+++++.+.. +...+||++|++||||+.+|+.+....... .+.+++.+||+.+......
T Consensus 76 ~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~------~~~PFI~~NCa~~~en~~~~e 149 (403)
T COG1221 76 ALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSARR------AEAPFIAFNCAAYSENLQEAE 149 (403)
T ss_pred hhhhhhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhhcc------cCCCEEEEEHHHhCcCHHHHH
Confidence 578899999999988887765 445799999999999999999999443221 2678999999877542110
Q ss_pred -----cchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCC-------------CcEEEEEe
Q 005511 116 -----RGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG-------------ELQCIGAT 177 (693)
Q Consensus 116 -----~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~vI~~t 177 (693)
.|.+......-.....+..++.||+||++.|-+. .+..|..+++.+ ++.+|+||
T Consensus 150 LFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~--------~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT 221 (403)
T COG1221 150 LFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPE--------GQEKLLRVLEEGEYRRVGGSQPRPVDVRLICAT 221 (403)
T ss_pred HhccccceeecccCCcCchheecCCCEEehhhhhhCCHh--------HHHHHHHHHHcCceEecCCCCCcCCCceeeecc
Confidence 0000000001111122345679999999999654 678888888753 37889998
Q ss_pred chHHHHhhhhcCHHHhccCC--ccccCCCCH--HHHHHHHHHHHHhHhhhcCcccCh---HHHHHHHHhhhhhhcccCCc
Q 005511 178 TLDEYRKHIEKDPALERRFQ--PVKVPEPSV--DETIQILKGLRERYEIHHKLRYTD---EALVSAAQLSYQYISDRFLP 250 (693)
Q Consensus 178 ~~~~~~~~~~l~~~l~~Rf~--~i~~~~p~~--~e~~~il~~~~~~~~~~~~~~~~~---~~l~~l~~~~~~~~~~~~~~ 250 (693)
+...-...+ .-..+.+|.. .|.+|++.. +++..+++.++..+....+..+.. +++..+... .+.+ +-
T Consensus 222 ~~~l~~~~~-~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y--~~pG---Ni 295 (403)
T COG1221 222 TEDLEEAVL-AGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAY--DWPG---NI 295 (403)
T ss_pred ccCHHHHHH-hhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC--CCCC---cH
Confidence 875432111 1025556454 566666554 355555566665554444443332 334333322 1111 22
Q ss_pred hhhhhHHHHHhhHH
Q 005511 251 DKAIDLIDEAGSRV 264 (693)
Q Consensus 251 ~~~~~ll~~a~~~~ 264 (693)
+...++++.++..+
T Consensus 296 rELkN~Ve~~~~~~ 309 (403)
T COG1221 296 RELKNLVERAVAQA 309 (403)
T ss_pred HHHHHHHHHHHHHh
Confidence 56666666666654
No 405
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.04 E-value=4.7e-09 Score=107.37 Aligned_cols=165 Identities=23% Similarity=0.285 Sum_probs=106.0
Q ss_pred CCCCccCCHHHHHHHHHHHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCC-CC----CCCce--------------
Q 005511 40 KLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVP-DT----IEGKK-------------- 100 (693)
Q Consensus 40 ~~~~iiG~~~~~~~l~~~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~-~~----~~~~~-------------- 100 (693)
.|.-++|++.....|....-.+.-.++|+-|+.|+||||++++++.-|....+- .+ ....+
T Consensus 15 pf~aivGqd~lk~aL~l~av~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~ 94 (423)
T COG1239 15 PFTAIVGQDPLKLALGLNAVDPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDEL 94 (423)
T ss_pred chhhhcCchHHHHHHhhhhcccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhcccc
Confidence 356689999998887666556777899999999999999999999988642210 00 00000
Q ss_pred -EEEEec--cccccCCcccchHHHHH------HHHH---------HHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHH
Q 005511 101 -VITLDM--GLLVAGTKYRGEFEERL------KKLM---------EEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANIL 162 (693)
Q Consensus 101 -~~~~~~--~~l~~~~~~~g~~~~~l------~~~~---------~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L 162 (693)
.+.... -.+. ....+.++.++ .+.+ ..+.+.+..||++||++.|. ...+++|
T Consensus 95 ~~~~~~~r~v~~v--~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~--------d~lvd~L 164 (423)
T COG1239 95 EWLPREKRKVPFV--ALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLD--------DHLVDAL 164 (423)
T ss_pred ccccccceeccee--cCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEecccccc--------HHHHHHH
Confidence 000000 0000 00122223311 1111 11123456799999999984 3478888
Q ss_pred hhhhcCC---------------CcEEEEEechHHHHhhhhcCHHHhccCC-ccccCCCC-HHHHHHHHHHHHH
Q 005511 163 KPSLARG---------------ELQCIGATTLDEYRKHIEKDPALERRFQ-PVKVPEPS-VDETIQILKGLRE 218 (693)
Q Consensus 163 ~~~l~~~---------------~v~vI~~t~~~~~~~~~~l~~~l~~Rf~-~i~~~~p~-~~e~~~il~~~~~ 218 (693)
+..++.| ++++|+++|+.+- .+-|.|+.||. .+.+..|+ .+++.+|+++...
T Consensus 165 Ld~aaeG~n~vereGisi~hpa~fvligTmNPEeG----eLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~ 233 (423)
T COG1239 165 LDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEG----ELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLA 233 (423)
T ss_pred HHHHHhCCceeeeCceeeccCccEEEEeecCcccc----ccchhhHhhhcceeeccCCCCHHHHHHHHHHHHH
Confidence 8888754 3789999999863 68999999997 77666665 5788888887654
No 406
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.04 E-value=2e-09 Score=122.91 Aligned_cols=177 Identities=18% Similarity=0.276 Sum_probs=113.7
Q ss_pred CCCCCccCCHHHHHHHHHHHhc--CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCccc
Q 005511 39 GKLDPVVGRQPQIERVVQILGR--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYR 116 (693)
Q Consensus 39 ~~~~~iiG~~~~~~~l~~~l~~--~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 116 (693)
.+|++++|.+..++++.+.+.. ....+|||+|++||||+++|+++.+.... .+.+++.++|..+...
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r-------~~~pfv~vnc~~~~~~---- 390 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESER-------AAGPYIAVNCQLYPDE---- 390 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCc-------cCCCeEEEECCCCChH----
Confidence 3699999999999887776654 45678999999999999999999876532 2568999999776310
Q ss_pred chHHHHHHHHHH------------HHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCC-------------Cc
Q 005511 117 GEFEERLKKLME------------EIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG-------------EL 171 (693)
Q Consensus 117 g~~~~~l~~~~~------------~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v 171 (693)
.. -..+|. ......++.|||||++.|. .+.+..|..+++.+ ++
T Consensus 391 -~~---~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~--------~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~ 458 (638)
T PRK11388 391 -AL---AEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLS--------PELQSALLQVLKTGVITRLDSRRLIPVDV 458 (638)
T ss_pred -HH---HHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCC--------HHHHHHHHHHHhcCcEEeCCCCceEEeeE
Confidence 00 112222 1223456799999999994 44788888887644 36
Q ss_pred EEEEEechHHHH--hhhhcCHHHhccCCccccCCCCHHHH----HHHHHHHHHhHhhh--cCcccChHHHHHHHH
Q 005511 172 QCIGATTLDEYR--KHIEKDPALERRFQPVKVPEPSVDET----IQILKGLRERYEIH--HKLRYTDEALVSAAQ 238 (693)
Q Consensus 172 ~vI~~t~~~~~~--~~~~l~~~l~~Rf~~i~~~~p~~~e~----~~il~~~~~~~~~~--~~~~~~~~~l~~l~~ 238 (693)
.+|++|+..... ..-.+.+.|.-|+..+.+..|+..+| ..+++.++.++... ..+.++++++..+.+
T Consensus 459 riI~~t~~~l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~ 533 (638)
T PRK11388 459 RVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVS 533 (638)
T ss_pred EEEEeccCCHHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHc
Confidence 788888864311 01123455666777555555555544 44455555443211 124567777666654
No 407
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.04 E-value=2.8e-09 Score=117.74 Aligned_cols=179 Identities=16% Similarity=0.218 Sum_probs=111.6
Q ss_pred hcCCCCCccCCHHHHHHHHHHHhc--CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCc
Q 005511 37 EEGKLDPVVGRQPQIERVVQILGR--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTK 114 (693)
Q Consensus 37 ~~~~~~~iiG~~~~~~~l~~~l~~--~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (693)
...+|++++|.+..++++.+.+.. ....+|+|+|++||||+++|+++...... .+.+++.++|+.+...
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r-------~~~pfv~inca~~~~~-- 269 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPR-------GKKPFLALNCASIPDD-- 269 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCC-------CCCCeEEeccccCCHH--
Confidence 345899999999988887776543 45678999999999999999997765422 2467899999775310
Q ss_pred ccchHHHHHHHHHH---------------HHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCC----------
Q 005511 115 YRGEFEERLKKLME---------------EIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG---------- 169 (693)
Q Consensus 115 ~~g~~~~~l~~~~~---------------~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~---------- 169 (693)
..+ ..+|. ......++.|||||++.|.+ ..+..|..+++.+
T Consensus 270 ---~~e---~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~--------~~Q~~Ll~~l~~~~~~~~g~~~~ 335 (520)
T PRK10820 270 ---VVE---SELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSP--------RMQAKLLRFLNDGTFRRVGEDHE 335 (520)
T ss_pred ---HHH---HHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCH--------HHHHHHHHHHhcCCcccCCCCcc
Confidence 000 01111 11234456899999999943 3677777777543
Q ss_pred ---CcEEEEEechHHH--HhhhhcCHHHhccCCccccCCCCHHH----HHHHHHHHHHhHhhhcC---cccChHHHHHHH
Q 005511 170 ---ELQCIGATTLDEY--RKHIEKDPALERRFQPVKVPEPSVDE----TIQILKGLRERYEIHHK---LRYTDEALVSAA 237 (693)
Q Consensus 170 ---~v~vI~~t~~~~~--~~~~~l~~~l~~Rf~~i~~~~p~~~e----~~~il~~~~~~~~~~~~---~~~~~~~l~~l~ 237 (693)
++.+|++|+.+.. ...-.+.+.|..|+..+.+..|+..+ ...+++.++.++....+ ..++++++..+.
T Consensus 336 ~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~ 415 (520)
T PRK10820 336 VHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLT 415 (520)
T ss_pred eeeeeEEEEecCCCHHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHh
Confidence 3578888765431 11112456788888744444444444 44445555554432222 356777666554
Q ss_pred H
Q 005511 238 Q 238 (693)
Q Consensus 238 ~ 238 (693)
.
T Consensus 416 ~ 416 (520)
T PRK10820 416 R 416 (520)
T ss_pred c
Confidence 3
No 408
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.04 E-value=3.8e-09 Score=116.89 Aligned_cols=224 Identities=15% Similarity=0.201 Sum_probs=117.0
Q ss_pred HHHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceee----eccc
Q 005511 368 LKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIR----LDMS 443 (693)
Q Consensus 368 ~~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~----~~~~ 443 (693)
.+++..-.++++|++..++.+...+.....+ ..+...++|+||||||||++++++|..+ +..+.. +++.
T Consensus 76 eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~----~~~~~illL~GP~GsGKTTl~~~la~~l---~~~~~Ew~npv~~~ 148 (637)
T TIGR00602 76 EKYKPETQHELAVHKKKIEEVETWLKAQVLE----NAPKRILLITGPSGCGKSTTIKILSKEL---GIQVQEWSNPTLPD 148 (637)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhcccc----cCCCcEEEEECCCCCCHHHHHHHHHHHh---hhHHHHHhhhhhhc
Confidence 3455556778999999999988887655332 2222358999999999999999999987 322222 1111
Q ss_pred cccchhhhhhhcCCC-CCCcCcCc-cchhhHHHH----------cCCCEEEEEccCcccC----HHHHHHHH-HHhhcce
Q 005511 444 EFMERHTVSKLIGSP-PGYVGYTE-GGQLTEAVR----------RRPYTVVLFDEIEKAH----PDVFNMML-QILEDGR 506 (693)
Q Consensus 444 ~~~~~~~~~~l~g~~-~~~~g~~~-~~~l~~~~~----------~~~~~vl~iDEid~l~----~~~~~~Ll-~~le~~~ 506 (693)
..........-++.. ..+....+ -..+...+. .....||||||++.+. ...++.|+ ...+.+.
T Consensus 149 ~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~ 228 (637)
T TIGR00602 149 FQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGR 228 (637)
T ss_pred ccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCCC
Confidence 110000000000000 00100000 011222221 1234699999996653 33333333 3444443
Q ss_pred eeCCCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhh--ccCcEEEcCC
Q 005511 507 LTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLN--RLDEMIVFRQ 584 (693)
Q Consensus 507 ~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~--R~~~~v~f~~ 584 (693)
+. +|+++|...... .......| .....+.+++++ |+ .+|.|+|
T Consensus 229 ~p------------LI~I~TE~~~~~--~~~~~~~f--------------------~~~~lL~~eLls~~rv-~~I~FnP 273 (637)
T TIGR00602 229 CP------------LVFIITESLEGD--NNQRRLLF--------------------PAETIMNKEILEEPRV-SNISFNP 273 (637)
T ss_pred ce------------EEEEecCCcccc--cccccccc--------------------chhcccCHhHhcccce-eEEEeCC
Confidence 22 333333211100 00000000 001114588987 55 5799999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCeEEe-CHHHHHHHHHhccCCCCCcchHHHHHHH
Q 005511 585 LTKLEVKEIADIMLKEVFDRLKTKDIELQV-TERFRERVVEEGYNPSYGARPLRRAIMR 642 (693)
Q Consensus 585 l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~-~~~~~~~l~~~~~~~~~g~r~l~~~i~~ 642 (693)
++...+.+.+.+.+....... +....+ ++++++.|+. ....++|.+|..
T Consensus 274 ia~t~l~K~L~rIl~~E~~~~---~~~~~~p~~~~l~~I~~------~s~GDiRsAIn~ 323 (637)
T TIGR00602 274 IAPTIMKKFLNRIVTIEAKKN---GEKIKVPKKTSVELLCQ------GCSGDIRSAINS 323 (637)
T ss_pred CCHHHHHHHHHHHHHhhhhcc---ccccccCCHHHHHHHHH------hCCChHHHHHHH
Confidence 999999999988887532211 222223 6788888876 224467788873
No 409
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=99.04 E-value=1.5e-09 Score=105.77 Aligned_cols=129 Identities=12% Similarity=0.069 Sum_probs=88.1
Q ss_pred ceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccc-----hhhhhhhc--CCCCCCcCcCccchhhHHHHc--
Q 005511 406 IASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFME-----RHTVSKLI--GSPPGYVGYTEGGQLTEAVRR-- 476 (693)
Q Consensus 406 ~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~-----~~~~~~l~--g~~~~~~g~~~~~~l~~~~~~-- 476 (693)
.+.+||+||+|+||..+|.++|+.+.+.+.. -.|+...+ .....++. .+....++.++.+.+.+.+..
T Consensus 7 ~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~---~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s 83 (261)
T PRK05818 7 THPLLLIERKGSFLKPFLYEYLTSIVCTKAN---GFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPS 83 (261)
T ss_pred CcceeeeCCCCCcHHHHHHHHHHHHcCCCCC---CCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCc
Confidence 3569999999999999999999998654321 01221111 11111111 111112333333444444332
Q ss_pred ---CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchH
Q 005511 477 ---RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSY 553 (693)
Q Consensus 477 ---~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~ 553 (693)
+...|++||++|+++....|+||+.+|+ +..+++||+.|+....
T Consensus 84 ~e~~~~KV~II~~ae~m~~~AaNaLLK~LEE-----------Pp~~t~fiLit~~~~~---------------------- 130 (261)
T PRK05818 84 VESNGKKIYIIYGIEKLNKQSANSLLKLIEE-----------PPKNTYGIFTTRNENN---------------------- 130 (261)
T ss_pred hhcCCCEEEEeccHhhhCHHHHHHHHHhhcC-----------CCCCeEEEEEECChHh----------------------
Confidence 2357999999999999999999999999 6779999999886554
Q ss_pred HHHHHHHHHHHhhcCchhHhhccCcEEEcCCC
Q 005511 554 NRIKSLVTEELKQYFRPEFLNRLDEMIVFRQL 585 (693)
Q Consensus 554 ~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l 585 (693)
+.|.+++|| +.+.|+++
T Consensus 131 --------------lLpTI~SRC-q~~~~~~~ 147 (261)
T PRK05818 131 --------------ILNTILSRC-VQYVVLSK 147 (261)
T ss_pred --------------CchHhhhhe-eeeecCCh
Confidence 679999999 78888887
No 410
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=7.5e-10 Score=114.66 Aligned_cols=159 Identities=23% Similarity=0.316 Sum_probs=96.0
Q ss_pred CCCCccCCHHHHHHHHHHHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccc-----cccCCc
Q 005511 40 KLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGL-----LVAGTK 114 (693)
Q Consensus 40 ~~~~iiG~~~~~~~l~~~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~-----l~~~~~ 114 (693)
+|.|++||+..++.+..... ...|+||+||||||||++|+.+...|.....++.+.-..+..++... +....+
T Consensus 177 D~~DV~GQ~~AKrAleiAAA--GgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~~~~~~~~rP 254 (490)
T COG0606 177 DFKDVKGQEQAKRALEIAAA--GGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCPLKIHRP 254 (490)
T ss_pred chhhhcCcHHHHHHHHHHHh--cCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccccccCccceeCC
Confidence 78899999999998877644 57999999999999999999888776543222211111111111100 000000
Q ss_pred cc--chHHHHHHHHH--------HHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCC--------------
Q 005511 115 YR--GEFEERLKKLM--------EEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGE-------------- 170 (693)
Q Consensus 115 ~~--g~~~~~l~~~~--------~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~-------------- 170 (693)
++ .... ....++ ..+.....+|||+||+-.+- ..+++.|++-||++.
T Consensus 255 Fr~PHHsa-S~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~--------~~iLe~LR~PLE~g~i~IsRa~~~v~ypa 325 (490)
T COG0606 255 FRAPHHSA-SLAALVGGGGVPRPGEISLAHNGVLFLDELPEFK--------RSILEALREPLENGKIIISRAGSKVTYPA 325 (490)
T ss_pred ccCCCccc-hHHHHhCCCCCCCCCceeeecCCEEEeeccchhh--------HHHHHHHhCccccCcEEEEEcCCeeEEee
Confidence 00 0000 011111 22223456799999999873 458999999998765
Q ss_pred -cEEEEEechHHH-----------------H-hhhhcCHHHhccCC-ccccCCCCHHHH
Q 005511 171 -LQCIGATTLDEY-----------------R-KHIEKDPALERRFQ-PVKVPEPSVDET 209 (693)
Q Consensus 171 -v~vI~~t~~~~~-----------------~-~~~~l~~~l~~Rf~-~i~~~~p~~~e~ 209 (693)
+++|++||+-.. . ..-.+...|++|++ .++++.++..++
T Consensus 326 ~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~e~ 384 (490)
T COG0606 326 RFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLSAGEL 384 (490)
T ss_pred eeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCCCHHHh
Confidence 566777763211 0 01136778888998 788888875443
No 411
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=99.01 E-value=2.4e-08 Score=107.36 Aligned_cols=227 Identities=14% Similarity=0.178 Sum_probs=144.5
Q ss_pred ccHHHHHhhhhhhhhcCCCCCccCCHHHHHHHHHHHhc-----CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCC
Q 005511 23 PTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGR-----RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIE 97 (693)
Q Consensus 23 ~~l~~~~~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~-----~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~ 97 (693)
..|.++-..|+-...| +.+-+|+.+..++...+.. .....+.+.|-||||||..++.+.+.|....-...+.
T Consensus 380 S~l~~ara~Lhls~vp---~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p 456 (767)
T KOG1514|consen 380 SELSKARARLHLSAVP---ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELP 456 (767)
T ss_pred hHHHHHHHHhHHhhcc---ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCC
Confidence 4566666666655544 4567889888887776553 2234678999999999999999999886322222223
Q ss_pred CceEEEEeccccccCC--------cccc---hH---HHHHHHHHHHH-HhCCCeEEEEeccchhhhCCCCCChHhHHHHH
Q 005511 98 GKKVITLDMGLLVAGT--------KYRG---EF---EERLKKLMEEI-KQSDEIILFIDEVHTLIGAGAAEGAIDAANIL 162 (693)
Q Consensus 98 ~~~~~~~~~~~l~~~~--------~~~g---~~---~~~l~~~~~~~-~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L 162 (693)
...++++++-.+.... ...| .+ ...+..-|... ....++|++|||+|.|+.. -+.+|
T Consensus 457 ~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr--------~QdVl 528 (767)
T KOG1514|consen 457 KFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTR--------SQDVL 528 (767)
T ss_pred CccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcc--------cHHHH
Confidence 5566777754333210 0001 01 11122222211 1345789999999999864 24444
Q ss_pred hhh-----hcCCCcEEEEEechHHHHhhhhcCHHHhccCC--ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHH
Q 005511 163 KPS-----LARGELQCIGATTLDEYRKHIEKDPALERRFQ--PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVS 235 (693)
Q Consensus 163 ~~~-----l~~~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~--~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~ 235 (693)
..+ +.+..++||+.+|..+....+ +.....+|+. .+.|.+++.+|+.+|+...+... ..+..++++.
T Consensus 529 Yn~fdWpt~~~sKLvvi~IaNTmdlPEr~-l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-----~~f~~~aiel 602 (767)
T KOG1514|consen 529 YNIFDWPTLKNSKLVVIAIANTMDLPERL-LMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-----DAFENKAIEL 602 (767)
T ss_pred HHHhcCCcCCCCceEEEEecccccCHHHH-hccchhhhccceeeecCCCCHHHHHHHHHHhhcch-----hhcchhHHHH
Confidence 443 346778899988876644333 4555666775 89999999999999999777643 3456677776
Q ss_pred HHHhhhhhhcccCCchhhhhHHHHHhhHHHHhhc
Q 005511 236 AAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHA 269 (693)
Q Consensus 236 l~~~~~~~~~~~~~~~~~~~ll~~a~~~~~~~~~ 269 (693)
+++..+.-.+ ..+.|.++|+.|...+..+..
T Consensus 603 varkVAavSG---DaRraldic~RA~Eia~~~~~ 633 (767)
T KOG1514|consen 603 VARKVAAVSG---DARRALDICRRAAEIAEERNV 633 (767)
T ss_pred HHHHHHhccc---cHHHHHHHHHHHHHHhhhhcc
Confidence 6664443333 347899999999887766655
No 412
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=99.00 E-value=5.4e-09 Score=113.67 Aligned_cols=214 Identities=18% Similarity=0.176 Sum_probs=128.3
Q ss_pred HhhhhhhhhcCCCCCccCCHHHHHHHHHHHhcC-----CCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEE
Q 005511 29 GTNLTKLAEEGKLDPVVGRQPQIERVVQILGRR-----TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVIT 103 (693)
Q Consensus 29 ~~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~-----~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 103 (693)
..+|.++|+|.+++++..+.+.++.+..++... ..+-+||+|||||||||+++.+|+++ +..+.+
T Consensus 6 ~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el----------g~~v~E 75 (519)
T PF03215_consen 6 SEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL----------GFEVQE 75 (519)
T ss_pred cCccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh----------CCeeEE
Confidence 468999999999999999999999998888752 12345789999999999999999998 444443
Q ss_pred Eecccc-c----cCCcccc------hHHH---HHHHH-HHHHH-----------hCCCeEEEEeccchhhhCCCCCChHh
Q 005511 104 LDMGLL-V----AGTKYRG------EFEE---RLKKL-MEEIK-----------QSDEIILFIDEVHTLIGAGAAEGAID 157 (693)
Q Consensus 104 ~~~~~l-~----~~~~~~g------~~~~---~l~~~-~~~~~-----------~~~~~vL~iDEid~l~~~~~~~~~~~ 157 (693)
...... . ....+.+ .+.. .+... +...+ ...+.||+|||+..++... ...
T Consensus 76 w~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~----~~~ 151 (519)
T PF03215_consen 76 WINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD----TSR 151 (519)
T ss_pred ecCCCCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchh----HHH
Confidence 321110 0 0000000 0001 11111 11111 1246799999999775432 245
Q ss_pred HHHHHhhhhcCCC---cEEEEE-ec-hH---HHH-----hhhhcCHHHhcc--CCccccCCCCHHHHHHHHHHHHHhHh-
Q 005511 158 AANILKPSLARGE---LQCIGA-TT-LD---EYR-----KHIEKDPALERR--FQPVKVPEPSVDETIQILKGLRERYE- 221 (693)
Q Consensus 158 ~~~~L~~~l~~~~---v~vI~~-t~-~~---~~~-----~~~~l~~~l~~R--f~~i~~~~p~~~e~~~il~~~~~~~~- 221 (693)
+.++|++.+..+. +++|.+ +. .. ... ..--+++.++.. +..|.|.+-+..-..+.|..++..-.
T Consensus 152 f~~~L~~~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~ 231 (519)
T PF03215_consen 152 FREALRQYLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEAR 231 (519)
T ss_pred HHHHHHHHHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhh
Confidence 6777777776543 333333 00 00 000 000246667664 45899999999988888888776421
Q ss_pred hhcC-cccC--hHHHHHHHHhhhhhhcccCCchhhhhHHHHHhh
Q 005511 222 IHHK-LRYT--DEALVSAAQLSYQYISDRFLPDKAIDLIDEAGS 262 (693)
Q Consensus 222 ~~~~-~~~~--~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~a~~ 262 (693)
...+ ...+ .+.++.++..+.|.+ +.|+..|+-.+.
T Consensus 232 ~~~~~~~~p~~~~~l~~I~~~s~GDI------RsAIn~LQf~~~ 269 (519)
T PF03215_consen 232 SSSGKNKVPDKQSVLDSIAESSNGDI------RSAINNLQFWCL 269 (519)
T ss_pred hhcCCccCCChHHHHHHHHHhcCchH------HHHHHHHHHHhc
Confidence 1111 1222 345888888887765 667776665554
No 413
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.98 E-value=1.6e-08 Score=94.99 Aligned_cols=178 Identities=23% Similarity=0.340 Sum_probs=119.7
Q ss_pred ccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhc
Q 005511 376 KRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLI 455 (693)
Q Consensus 376 ~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 455 (693)
..++|-+...+.+.+.-++...|. |-.++||+|.-|||||++.+++...+...+..++.++-.++..-
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~-----pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~L------- 127 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGL-----PANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLATL------- 127 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCC-----cccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhhH-------
Confidence 356788888888877776665443 33589999999999999999999998877888888876665421
Q ss_pred CCCCCCcCcCccchhhHHHHcCC-CEEEEEccCccc-CHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhh-
Q 005511 456 GSPPGYVGYTEGGQLTEAVRRRP-YTVVLFDEIEKA-HPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSV- 532 (693)
Q Consensus 456 g~~~~~~g~~~~~~l~~~~~~~~-~~vl~iDEid~l-~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~- 532 (693)
..+.+.++..+ +-|||+|+.--= .......|-.+||+|.-. .+.|++|-+|||...-+
T Consensus 128 ------------p~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~-------rP~NVl~YATSNRRHLl~ 188 (287)
T COG2607 128 ------------PDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEG-------RPANVLFYATSNRRHLLP 188 (287)
T ss_pred ------------HHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCccc-------CCCeEEEEEecCCccccc
Confidence 34556666655 458888975332 345667777888775422 46699999999964321
Q ss_pred --hhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHHHHHH
Q 005511 533 --IEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEV 601 (693)
Q Consensus 533 --i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l~~~ 601 (693)
+.++....| .... .+...+. -.|-+||.-.+.|.|.+.++..+|++.+.+.+
T Consensus 189 e~~~dn~~~~~---eih~------------~eaveEK--lSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~ 242 (287)
T COG2607 189 EDMKDNEGSTG---EIHP------------SEAVEEK--LSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHF 242 (287)
T ss_pred HhhhhCCCccc---ccCh------------hHHHHHh--hchhhhcceeecccCCCHHHHHHHHHHHHHHc
Confidence 111111000 0000 1111121 25779999999999999999999999888643
No 414
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.98 E-value=3.8e-08 Score=101.14 Aligned_cols=210 Identities=19% Similarity=0.230 Sum_probs=133.6
Q ss_pred CCCCccCCHHHHHHHHHHHh----cCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCC--
Q 005511 40 KLDPVVGRQPQIERVVQILG----RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGT-- 113 (693)
Q Consensus 40 ~~~~iiG~~~~~~~l~~~l~----~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-- 113 (693)
.-..++|++.++..+.+++. .....++.++|-||||||.+...+...+.... .....++++|..+....
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~-----~~~~~v~inc~sl~~~~ai 222 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSS-----KSPVTVYINCTSLTEASAI 222 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhc-----ccceeEEEeeccccchHHH
Confidence 45679999999999888765 46678899999999999999988877765421 23456778876543211
Q ss_pred ------------cccchHHHHHHHHHHHHHhC-CCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCCcEEEEEechH
Q 005511 114 ------------KYRGEFEERLKKLMEEIKQS-DEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLD 180 (693)
Q Consensus 114 ------------~~~g~~~~~l~~~~~~~~~~-~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~t~~~ 180 (693)
...+...+....+-....+. .+.++++||+|.|...+...- ..-..+..+-..++++|+.+|..
T Consensus 223 F~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vL---y~lFewp~lp~sr~iLiGiANsl 299 (529)
T KOG2227|consen 223 FKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVL---YTLFEWPKLPNSRIILIGIANSL 299 (529)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccccee---eeehhcccCCcceeeeeeehhhh
Confidence 00111112222222223333 377999999999974421100 00111233335678999999998
Q ss_pred HHHhhhhcCHHHhccC---C-ccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhhhhH
Q 005511 181 EYRKHIEKDPALERRF---Q-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDL 256 (693)
Q Consensus 181 ~~~~~~~l~~~l~~Rf---~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l 256 (693)
++.+.+ -+.|..|. + .+.|++|+.+|..+|++..+... ....+-+.+++.+|+...+-.++ -+++.++
T Consensus 300 DlTdR~--LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~---~t~~~~~~Aie~~ArKvaa~SGD---lRkaLdv 371 (529)
T KOG2227|consen 300 DLTDRF--LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEE---STSIFLNAAIELCARKVAAPSGD---LRKALDV 371 (529)
T ss_pred hHHHHH--hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcc---cccccchHHHHHHHHHhccCchh---HHHHHHH
Confidence 765443 45555544 2 78999999999999999877642 33344456777777765554433 3778888
Q ss_pred HHHHhhHHH
Q 005511 257 IDEAGSRVR 265 (693)
Q Consensus 257 l~~a~~~~~ 265 (693)
++.|...+.
T Consensus 372 ~R~aiEI~E 380 (529)
T KOG2227|consen 372 CRRAIEIAE 380 (529)
T ss_pred HHHHHHHHH
Confidence 887776553
No 415
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.97 E-value=8.1e-09 Score=113.69 Aligned_cols=255 Identities=19% Similarity=0.193 Sum_probs=147.0
Q ss_pred HHHHHHHhccccChHHHHHHHHHHHHHHhhcCCCC----CCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccc
Q 005511 368 LKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNP----NRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMS 443 (693)
Q Consensus 368 ~~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~----~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~ 443 (693)
..+.+.+.-.+.|.+.+++.|.-++--+- ....+ -++..|+||.|.||||||.+-+.+++.+.+ .-+.....+
T Consensus 278 ~~l~~SiaPsIyG~e~VKkAilLqLfgGv-~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr--~vytsgkgs 354 (682)
T COG1241 278 DILIKSIAPSIYGHEDVKKAILLQLFGGV-KKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPR--GVYTSGKGS 354 (682)
T ss_pred HHHHHHhcccccCcHHHHHHHHHHhcCCC-cccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCc--eEEEccccc
Confidence 34555677889999997776655553221 11111 133458999999999999999999998722 112222221
Q ss_pred cccchhhhhhhcCCCCCCcCcCccchhhHHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEE
Q 005511 444 EFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLI 523 (693)
Q Consensus 444 ~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI 523 (693)
.-.+-.. .....+ ..|+- ..-.+++--+.+||..|||+|+++..-.++|...||.++++...+. |+
T Consensus 355 s~~GLTA--av~rd~--~tge~--~LeaGALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAG--------I~ 420 (682)
T COG1241 355 SAAGLTA--AVVRDK--VTGEW--VLEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAG--------IT 420 (682)
T ss_pred cccCcee--EEEEcc--CCCeE--EEeCCEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcEeeecccc--------ee
Confidence 1110000 000000 01100 0001334457789999999999999999999999999988765421 33
Q ss_pred EecCCChhhhhhcccccc-cccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEc-CCCCHHHHHHHHHHHHHHH
Q 005511 524 MTSNVGSSVIEKGGRRIG-FDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVF-RQLTKLEVKEIADIMLKEV 601 (693)
Q Consensus 524 ~~tn~~~~~i~~~~~~~~-f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f-~~l~~~~~~~i~~~~l~~~ 601 (693)
.+-|....++...+...| |+.+....+.+ .|+++|++|||-++.. ..++++.-..++++.+...
T Consensus 421 atLnARcsvLAAaNP~~Gryd~~~~~~enI--------------~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h 486 (682)
T COG1241 421 ATLNARCSVLAAANPKFGRYDPKKTVAENI--------------NLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKH 486 (682)
T ss_pred eecchhhhhhhhhCCCCCcCCCCCCHHHhc--------------CCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHH
Confidence 333333333333333333 33222221111 1789999999997555 4566665566666665544
Q ss_pred H------------------------HHH---hcCCCeEEeCHHHHHHHHHhccC---C-----------CCCcchHHHHH
Q 005511 602 F------------------------DRL---KTKDIELQVTERFRERVVEEGYN---P-----------SYGARPLRRAI 640 (693)
Q Consensus 602 ~------------------------~~~---~~~~~~l~~~~~~~~~l~~~~~~---~-----------~~g~r~l~~~i 640 (693)
. +++ ....+...+++++.+.|.++ |. . ..-+|+|.+.|
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~-Yv~~Rk~~~~~~~~~~~piT~RqLEsii 565 (682)
T COG1241 487 RGEEPEETISLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDY-YVEMRKKSALVEEKRTIPITARQLESII 565 (682)
T ss_pred hccccccccccccccccccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHH-HHHhhhccccccccCcccccHHHHHHHH
Confidence 2 111 12235567999999888865 21 1 12378888888
Q ss_pred HHHHHHHHHHHHHhcc
Q 005511 641 MRLLEDSMAEKMLARE 656 (693)
Q Consensus 641 ~~~i~~~l~~~~l~~~ 656 (693)
+ +..+.|+.-|+..
T Consensus 566 R--LaeA~Ak~rLS~~ 579 (682)
T COG1241 566 R--LAEAHAKMRLSDV 579 (682)
T ss_pred H--HHHHHHhhhccCC
Confidence 7 6667777666553
No 416
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.96 E-value=1.6e-08 Score=103.28 Aligned_cols=97 Identities=25% Similarity=0.196 Sum_probs=64.7
Q ss_pred CeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCC-------------cEEEEEechHHHHhh--hhcCHHHhccCCcc
Q 005511 135 EIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGE-------------LQCIGATTLDEYRKH--IEKDPALERRFQPV 199 (693)
Q Consensus 135 ~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~-------------v~vI~~t~~~~~~~~--~~l~~~l~~Rf~~i 199 (693)
.+|+-++|+.+. ..+.+..|+.+++.+. .+||+++|+.+|..+ -....+|++||..+
T Consensus 237 rGi~~f~Ei~K~--------~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR~~~i 308 (361)
T smart00763 237 RGILEFVEMFKA--------DIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLDRIIKV 308 (361)
T ss_pred CceEEEeehhcC--------CHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhhceEEE
Confidence 457777777766 3446666666665322 468899999988655 24579999999999
Q ss_pred ccCCCCH-HHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhh
Q 005511 200 KVPEPSV-DETIQILKGLRERYEIHHKLRYTDEALVSAAQLS 240 (693)
Q Consensus 200 ~~~~p~~-~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~ 240 (693)
.+|.+.. ++-.+|++..+..-. .....+.+.+++.++..+
T Consensus 309 ~vpY~l~~~~E~~Iy~k~~~~s~-~~~~~~aP~~le~aa~~a 349 (361)
T smart00763 309 KVPYCLRVSEEAQIYEKLLRNSD-LTEAHIAPHTLEMAALFS 349 (361)
T ss_pred eCCCcCCHHHHHHHHHHHhccCc-CcccccCchHHHHHHHHH
Confidence 9998865 566788887665311 123456666666655543
No 417
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.96 E-value=4.5e-09 Score=115.90 Aligned_cols=175 Identities=14% Similarity=0.145 Sum_probs=114.6
Q ss_pred ceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCC----CcCcCccchhhHHHHcCCCEE
Q 005511 406 IASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPG----YVGYTEGGQLTEAVRRRPYTV 481 (693)
Q Consensus 406 ~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~----~~g~~~~~~l~~~~~~~~~~v 481 (693)
.+++++.|+.||||+++++.++..+.. ..||+.+..+ .+...|+|...= ..|.. ..-.+.+..+++||
T Consensus 25 ~gGv~i~g~~G~~ks~~~r~l~~llp~-~~p~r~~p~~-----~t~~~L~Gg~Dl~~~l~~g~~--~~~pGlla~Ah~Gv 96 (584)
T PRK13406 25 LGGVVLRARAGPVRDRWLAALRALLPA-GTPLRRLPPG-----IADDRLLGGLDLAATLRAGRP--VAQRGLLAEADGGV 96 (584)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhcCC-CCCcccCCCC-----CcHHHccCCchHHhHhhcCCc--CCCCCceeeccCCE
Confidence 347999999999999999999999832 3466655443 233456664200 00000 01124455678899
Q ss_pred EEEccCcccCHHHHHHHHHHhhcceeeCCC-CCeeecC-CeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHH
Q 005511 482 VLFDEIEKAHPDVFNMMLQILEDGRLTDSK-GRTVDFK-NTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSL 559 (693)
Q Consensus 482 l~iDEid~l~~~~~~~Ll~~le~~~~~~~~-~~~~~~~-~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~ 559 (693)
||+||++.+++.+++.|++.|++|.++... |.++.++ ++++|++-| +..
T Consensus 97 L~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~-~~~---------------------------- 147 (584)
T PRK13406 97 LVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDE-GAE---------------------------- 147 (584)
T ss_pred EEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCC-Chh----------------------------
Confidence 999999999999999999999999988754 6666665 666666522 111
Q ss_pred HHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHH--HHHHHHHHHHHhcCCCeEEeCHHHHHHHHHh
Q 005511 560 VTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIA--DIMLKEVFDRLKTKDIELQVTERFRERVVEE 625 (693)
Q Consensus 560 ~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~--~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~ 625 (693)
....+++++++||+..|.+.+++..+..+.. ...+....+++. .+.++++++++++..
T Consensus 148 ----~~~~L~~~lLDRf~l~v~v~~~~~~~~~~~~~~~~~I~~AR~rl~----~v~v~~~~l~~i~~~ 207 (584)
T PRK13406 148 ----EDERAPAALADRLAFHLDLDGLALRDAREIPIDADDIAAARARLP----AVGPPPEAIAALCAA 207 (584)
T ss_pred ----cccCCCHHhHhheEEEEEcCCCChHHhcccCCCHHHHHHHHHHHc----cCCCCHHHHHHHHHH
Confidence 0012889999999999999998876653211 111222222221 345788888877654
No 418
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.96 E-value=1.6e-08 Score=108.82 Aligned_cols=166 Identities=18% Similarity=0.313 Sum_probs=109.8
Q ss_pred eEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCCcCcCccchhhHHHH-------cCCC
Q 005511 407 ASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVR-------RRPY 479 (693)
Q Consensus 407 ~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~-------~~~~ 479 (693)
-.+||+||||.||||+|+.+|+.. ++..+.+|.++-.....+.. .+.+++. ...+
T Consensus 327 KilLL~GppGlGKTTLAHViAkqa---GYsVvEINASDeRt~~~v~~---------------kI~~avq~~s~l~adsrP 388 (877)
T KOG1969|consen 327 KILLLCGPPGLGKTTLAHVIAKQA---GYSVVEINASDERTAPMVKE---------------KIENAVQNHSVLDADSRP 388 (877)
T ss_pred ceEEeecCCCCChhHHHHHHHHhc---CceEEEecccccccHHHHHH---------------HHHHHHhhccccccCCCc
Confidence 358899999999999999999996 89999999987654433321 1222222 1346
Q ss_pred EEEEEccCcccCHHHHHHHHHHhhcce--eeCCCCC---------eeecCCeEEEEecCCChhhhhhcccccccccCcCc
Q 005511 480 TVVLFDEIEKAHPDVFNMMLQILEDGR--LTDSKGR---------TVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDE 548 (693)
Q Consensus 480 ~vl~iDEid~l~~~~~~~Ll~~le~~~--~~~~~~~---------~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~ 548 (693)
.+|++||||-.++.+++.|+.++..-. .+...+. .-...+. |||.+|.-
T Consensus 389 ~CLViDEIDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RP-IICICNdL------------------- 448 (877)
T KOG1969|consen 389 VCLVIDEIDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRP-IICICNDL------------------- 448 (877)
T ss_pred ceEEEecccCCcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCC-EEEEecCc-------------------
Confidence 789999999999999999999997311 1111110 0001122 56666621
Q ss_pred ccchHHHHHHHHHHHHhhcCchhHh--hccCcEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHhc
Q 005511 549 KDSSYNRIKSLVTEELKQYFRPEFL--NRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEG 626 (693)
Q Consensus 549 ~~~~~~~l~~~~~~~l~~~~~~~l~--~R~~~~v~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 626 (693)
+-|+|. +-+..++.|.|++..-+.+-++.... + .++ .++..++..|++.
T Consensus 449 -------------------YaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~----r---E~m--r~d~~aL~~L~el- 499 (877)
T KOG1969|consen 449 -------------------YAPALRPLRPFAEIIAFVPPSQSRLVERLNEICH----R---ENM--RADSKALNALCEL- 499 (877)
T ss_pred -------------------cchhhhhcccceEEEEecCCChhHHHHHHHHHHh----h---hcC--CCCHHHHHHHHHH-
Confidence 446665 55668999999998887744433322 2 133 4888999999984
Q ss_pred cCCCCCcchHHHHHHHHH
Q 005511 627 YNPSYGARPLRRAIMRLL 644 (693)
Q Consensus 627 ~~~~~g~r~l~~~i~~~i 644 (693)
-..++|.+|+.+-
T Consensus 500 -----~~~DIRsCINtLQ 512 (877)
T KOG1969|consen 500 -----TQNDIRSCINTLQ 512 (877)
T ss_pred -----hcchHHHHHHHHH
Confidence 2346788887543
No 419
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.96 E-value=3.4e-08 Score=95.33 Aligned_cols=116 Identities=24% Similarity=0.213 Sum_probs=84.5
Q ss_pred CeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCC-cEEEEEechH-------HHHhhhhcCHHHhccCCccccCCCCH
Q 005511 135 EIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGE-LQCIGATTLD-------EYRKHIEKDPALERRFQPVKVPEPSV 206 (693)
Q Consensus 135 ~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~-v~vI~~t~~~-------~~~~~~~l~~~l~~Rf~~i~~~~p~~ 206 (693)
|.||||||+|.| +.+..++|++.+++.- .++|.+||+. ++.....++-.|+.|...|.-.+++.
T Consensus 289 pGVLFIDEvHML--------DIEcFsFlNrAlE~d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t~py~~ 360 (454)
T KOG2680|consen 289 PGVLFIDEVHML--------DIECFSFLNRALENDMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIISTQPYTE 360 (454)
T ss_pred cceEEEeeehhh--------hhHHHHHHHHHhhhccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhhhhheeecccCcH
Confidence 789999999998 4567889999998542 3445555532 11112256778899999999999999
Q ss_pred HHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhhhhHHHHHhhHHHHh
Q 005511 207 DETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLR 267 (693)
Q Consensus 207 ~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~a~~~~~~~ 267 (693)
++..+||+..+. ..++.+++++++.+....... .-+.++.++..+...+..|
T Consensus 361 ~d~~~IL~iRc~----EEdv~m~~~A~d~Lt~i~~~t-----sLRYai~Lit~a~~~~~kr 412 (454)
T KOG2680|consen 361 EDIKKILRIRCQ----EEDVEMNPDALDLLTKIGEAT-----SLRYAIHLITAASLVCLKR 412 (454)
T ss_pred HHHHHHHHhhhh----hhccccCHHHHHHHHHhhhhh-----hHHHHHHHHHHHHHHHHHh
Confidence 999999998887 478899999999988765433 2366777776665544333
No 420
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.95 E-value=1.8e-08 Score=102.13 Aligned_cols=152 Identities=13% Similarity=0.167 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCC-CCC
Q 005511 383 EAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSP-PGY 461 (693)
Q Consensus 383 ~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~-~~~ 461 (693)
.+++.+.+.+...+. .+.+||+|+.|.||+++|+.+++.+++....- ++..... .... .+ .+ .+.
T Consensus 3 ~~~~~l~~~i~~~~l--------~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~--~~~~~~p--~n~~-~~-d~~g~~ 68 (299)
T PRK07132 3 NWIKFLDNSATQNKI--------SHSFLLKSNYNEDIDEKILYFLNKFNNLQITN--LNEQELP--ANII-LF-DIFDKD 68 (299)
T ss_pred hHHHHHHHHHHhCCC--------CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCC--CCCCCCC--cceE-Ee-ccCCCc
Confidence 345566666654332 24688999999999999999999985422100 0000000 0000 00 00 001
Q ss_pred cCcCccchhhHHHH-----cCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhc
Q 005511 462 VGYTEGGQLTEAVR-----RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKG 536 (693)
Q Consensus 462 ~g~~~~~~l~~~~~-----~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~ 536 (693)
++..+.+.+.+.+. .+.+.|++||++|+++...+|+||+.||+ ++.+++||+.|+....
T Consensus 69 i~vd~Ir~l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEE-----------Pp~~t~~il~~~~~~k----- 132 (299)
T PRK07132 69 LSKSEFLSAINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEE-----------PPKDTYFLLTTKNINK----- 132 (299)
T ss_pred CCHHHHHHHHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhC-----------CCCCeEEEEEeCChHh-----
Confidence 11111122222221 13567999999999999999999999999 5678889988763332
Q ss_pred ccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHH
Q 005511 537 GRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADI 596 (693)
Q Consensus 537 ~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~ 596 (693)
+-|.+.+|| +++.|.|++.+++.+.+..
T Consensus 133 -------------------------------ll~TI~SRc-~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 133 -------------------------------VLPTIVSRC-QVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred -------------------------------ChHHHHhCe-EEEECCCCCHHHHHHHHHH
Confidence 668999999 9999999999999877643
No 421
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=4.2e-09 Score=118.50 Aligned_cols=155 Identities=22% Similarity=0.289 Sum_probs=122.7
Q ss_pred CCCCcccccccccCCCCCCCCCccHHHHHhhhhhhhhcCCCCCccCCHHHHHHHHHHHhcC--------CCCCeEEECCC
Q 005511 1 MVGESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRR--------TKNNPCLIGEP 72 (693)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~~--------~~~~vLl~Gp~ 72 (693)
+|++++.+|..++.....+.+...|......|+++ ++||++.+..+.+++... +...++|.||.
T Consensus 529 ~i~~~~s~~tgip~~~~~~~e~~~l~~L~~~L~~~--------V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpd 600 (898)
T KOG1051|consen 529 DISEVVSRWTGIPVDRLAEAEAERLKKLEERLHER--------VIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPD 600 (898)
T ss_pred chhhhhhhhcCCchhhhhhhHHHHHHHHHHHHHhh--------ccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCC
Confidence 36788899999999999999999999999999988 999999999999987642 33457899999
Q ss_pred CChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccc-------cCCcccchHHHHHHHHHHHHHhCCCeEEEEeccch
Q 005511 73 GVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLV-------AGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHT 145 (693)
Q Consensus 73 GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~ 145 (693)
|+|||-+|+++|..+.. ....++.++++.+. +...|+|..+ ...+...+++.+.+|+++||||.
T Consensus 601 gvGKt~lAkaLA~~~Fg-------se~~~IriDmse~~evskligsp~gyvG~e~--gg~LteavrrrP~sVVLfdeIEk 671 (898)
T KOG1051|consen 601 GVGKTELAKALAEYVFG-------SEENFIRLDMSEFQEVSKLIGSPPGYVGKEE--GGQLTEAVKRRPYSVVLFEEIEK 671 (898)
T ss_pred chhHHHHHHHHHHHHcC-------CccceEEechhhhhhhhhccCCCcccccchh--HHHHHHHHhcCCceEEEEechhh
Confidence 99999999999999954 34568889988532 2233455333 34667778888999999999998
Q ss_pred hhhCCCCCChHhHHHHHhhhhcCCC-------------cEEEEEechH
Q 005511 146 LIGAGAAEGAIDAANILKPSLARGE-------------LQCIGATTLD 180 (693)
Q Consensus 146 l~~~~~~~~~~~~~~~L~~~l~~~~-------------v~vI~~t~~~ 180 (693)
- +.++++.|+++++.|+ .+||.|+|..
T Consensus 672 A--------h~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~~ 711 (898)
T KOG1051|consen 672 A--------HPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNVG 711 (898)
T ss_pred c--------CHHHHHHHHHHHhcCccccCCCcEeeccceEEEEecccc
Confidence 7 4458999999998654 6778877753
No 422
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.93 E-value=1.6e-08 Score=104.23 Aligned_cols=150 Identities=18% Similarity=0.215 Sum_probs=100.4
Q ss_pred HHHHHHHHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCC-----CC----------CCCCceEEEEecccc--ccCC
Q 005511 51 IERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDV-----PD----------TIEGKKVITLDMGLL--VAGT 113 (693)
Q Consensus 51 ~~~l~~~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~-----~~----------~~~~~~~~~~~~~~l--~~~~ 113 (693)
-+++... ..+-++.+||+||+|+|||++|+.+|+.+.+... |. ...+..++.++...- ..+.
T Consensus 10 w~~l~~~-~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~ 88 (325)
T PRK08699 10 WRQIAEH-WERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGR 88 (325)
T ss_pred HHHHHHh-cCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccc
Confidence 3444444 2344556889999999999999999999976321 10 112344565654210 0000
Q ss_pred cccchHHHHHHHHHHHHHh----CCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCC--CcEEEEEechHHHHhhhh
Q 005511 114 KYRGEFEERLKKLMEEIKQ----SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG--ELQCIGATTLDEYRKHIE 187 (693)
Q Consensus 114 ~~~g~~~~~l~~~~~~~~~----~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~--~v~vI~~t~~~~~~~~~~ 187 (693)
.......+.++.+...+.. +...|++||+++.|.+ ...+.|.+.++.. ...+|.+|+.+. .
T Consensus 89 ~~~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~--------~a~naLLk~LEep~~~~~~Ilvth~~~-----~ 155 (325)
T PRK08699 89 KLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNL--------QAANSLLKVLEEPPPQVVFLLVSHAAD-----K 155 (325)
T ss_pred cCCCcCHHHHHHHHHHHhhCcccCCceEEEEechhhCCH--------HHHHHHHHHHHhCcCCCEEEEEeCChH-----h
Confidence 0001234556666666643 4456999999999954 3778888888753 466777777776 6
Q ss_pred cCHHHhccCCccccCCCCHHHHHHHHH
Q 005511 188 KDPALERRFQPVKVPEPSVDETIQILK 214 (693)
Q Consensus 188 l~~~l~~Rf~~i~~~~p~~~e~~~il~ 214 (693)
+.+.+.+|+..+.|++|+.++..+.|.
T Consensus 156 ll~ti~SRc~~~~~~~~~~~~~~~~L~ 182 (325)
T PRK08699 156 VLPTIKSRCRKMVLPAPSHEEALAYLR 182 (325)
T ss_pred ChHHHHHHhhhhcCCCCCHHHHHHHHH
Confidence 889999999999999999998877775
No 423
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.93 E-value=4.5e-09 Score=105.67 Aligned_cols=147 Identities=20% Similarity=0.357 Sum_probs=91.6
Q ss_pred HHHHHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCcccchHHHHHHHHHHHH---
Q 005511 54 VVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEI--- 130 (693)
Q Consensus 54 l~~~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~--- 130 (693)
+.+.+- ....++||+||+|||||++++.+.+.+.. ...-+..++++... ....++.+++..
T Consensus 25 ll~~l~-~~~~pvLl~G~~GtGKT~li~~~l~~l~~-------~~~~~~~~~~s~~T--------ts~~~q~~ie~~l~k 88 (272)
T PF12775_consen 25 LLDLLL-SNGRPVLLVGPSGTGKTSLIQNFLSSLDS-------DKYLVITINFSAQT--------TSNQLQKIIESKLEK 88 (272)
T ss_dssp HHHHHH-HCTEEEEEESSTTSSHHHHHHHHHHCSTT-------CCEEEEEEES-TTH--------HHHHHHHCCCTTECE
T ss_pred HHHHHH-HcCCcEEEECCCCCchhHHHHhhhccCCc-------cccceeEeeccCCC--------CHHHHHHHHhhcEEc
Confidence 444333 24679999999999999999988765522 12223344443322 112222222111
Q ss_pred --------HhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCC--------------cEEEEEechHHHHhhhhc
Q 005511 131 --------KQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGE--------------LQCIGATTLDEYRKHIEK 188 (693)
Q Consensus 131 --------~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~--------------v~vI~~t~~~~~~~~~~l 188 (693)
..++.+|+||||++.- ..+..+.....+.|+++++.++ +.+|+++++.. +...+
T Consensus 89 ~~~~~~gP~~~k~lv~fiDDlN~p--~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~--Gr~~i 164 (272)
T PF12775_consen 89 RRGRVYGPPGGKKLVLFIDDLNMP--QPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTG--GRNPI 164 (272)
T ss_dssp CTTEEEEEESSSEEEEEEETTT-S-----TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTT--T--SH
T ss_pred CCCCCCCCCCCcEEEEEecccCCC--CCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCC--CCCCC
Confidence 1234579999999954 5555666777899999997432 67889988743 33457
Q ss_pred CHHHhccCCccccCCCCHHHHHHHHHHHHHhH
Q 005511 189 DPALERRFQPVKVPEPSVDETIQILKGLRERY 220 (693)
Q Consensus 189 ~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~ 220 (693)
++++.|.|..+.++.|+.+.+..|+..++..+
T Consensus 165 s~R~~r~f~i~~~~~p~~~sl~~If~~il~~~ 196 (272)
T PF12775_consen 165 SPRFLRHFNILNIPYPSDESLNTIFSSILQSH 196 (272)
T ss_dssp HHHHHTTEEEEE----TCCHHHHHHHHHHHHH
T ss_pred ChHHhhheEEEEecCCChHHHHHHHHHHHhhh
Confidence 89999999999999999999999999888754
No 424
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.91 E-value=1.9e-08 Score=108.60 Aligned_cols=159 Identities=19% Similarity=0.266 Sum_probs=96.2
Q ss_pred CCCCCccCCHHHHHHHHHHHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEecc-----ccccCC
Q 005511 39 GKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMG-----LLVAGT 113 (693)
Q Consensus 39 ~~~~~iiG~~~~~~~l~~~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~-----~l~~~~ 113 (693)
..|.+++|+...++.+.-. .....+++|+||||+|||++++.++..+........+....++.+... .+ ...
T Consensus 188 ~d~~~v~Gq~~~~~al~la--a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~-~~r 264 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEIT--AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQW-RQR 264 (506)
T ss_pred cCeEEEECcHHHHhhhhee--ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCc-CCC
Confidence 3688899999888776433 345688999999999999999999976643211111111111111100 00 000
Q ss_pred ccc----chHHH-HHH----HHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCC--------------
Q 005511 114 KYR----GEFEE-RLK----KLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGE-------------- 170 (693)
Q Consensus 114 ~~~----g~~~~-~l~----~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~-------------- 170 (693)
+++ ..+.. .+. .--..+......+||+||++.+. ...++.|++.|+.+.
T Consensus 265 Pfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~~--------~~~~~~L~~~LE~g~v~I~r~g~~~~~pa 336 (506)
T PRK09862 265 PFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFE--------RRTLDALREPIESGQIHLSRTRAKITYPA 336 (506)
T ss_pred CccCCCccchHHHHhCCCceehhhHhhhccCCEEecCCchhCC--------HHHHHHHHHHHHcCcEEEecCCcceeccC
Confidence 110 00000 000 01123445556799999999874 347888888886543
Q ss_pred -cEEEEEechHHHHhh----------------hhcCHHHhccCC-ccccCCCCHHH
Q 005511 171 -LQCIGATTLDEYRKH----------------IEKDPALERRFQ-PVKVPEPSVDE 208 (693)
Q Consensus 171 -v~vI~~t~~~~~~~~----------------~~l~~~l~~Rf~-~i~~~~p~~~e 208 (693)
+.+|+++|+.+...+ -.++.++++||+ .+.++.++.++
T Consensus 337 ~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~ 392 (506)
T PRK09862 337 RFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGI 392 (506)
T ss_pred CEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHHH
Confidence 689999998641100 136789999999 89999998763
No 425
>PRK08116 hypothetical protein; Validated
Probab=98.90 E-value=2.2e-08 Score=100.66 Aligned_cols=107 Identities=17% Similarity=0.284 Sum_probs=72.0
Q ss_pred EEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCCcCcCccchhhHHHHcCCCEEEEEccC
Q 005511 408 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEI 487 (693)
Q Consensus 408 ~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEi 487 (693)
+++|+|++|||||.||.++++.+...+.+++.++.+++...... -+.. . +......+.+.+... .+|+|||+
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~--~~~~---~-~~~~~~~~~~~l~~~--dlLviDDl 187 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKS--TYKS---S-GKEDENEIIRSLVNA--DLLILDDL 187 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH--HHhc---c-ccccHHHHHHHhcCC--CEEEEecc
Confidence 59999999999999999999998666778888887776543111 0110 0 000112334444444 49999999
Q ss_pred --cccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhh
Q 005511 488 --EKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSV 532 (693)
Q Consensus 488 --d~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~ 532 (693)
++.+...++.|..+++... ..+..+|+|||.....
T Consensus 188 g~e~~t~~~~~~l~~iin~r~----------~~~~~~IiTsN~~~~e 224 (268)
T PRK08116 188 GAERDTEWAREKVYNIIDSRY----------RKGLPTIVTTNLSLEE 224 (268)
T ss_pred cCCCCCHHHHHHHHHHHHHHH----------HCCCCEEEECCCCHHH
Confidence 6678888999999998631 1123588999977653
No 426
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.90 E-value=2.5e-08 Score=106.60 Aligned_cols=192 Identities=21% Similarity=0.262 Sum_probs=119.1
Q ss_pred HhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeecc----ccccc--
Q 005511 374 LHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDM----SEFME-- 447 (693)
Q Consensus 374 l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~----~~~~~-- 447 (693)
.|++++|++++++++...++.+..++..++ ..++|.||||+|||++|+.|++.+- ..+++.+.. +...+
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~gl~~~~---~IL~LvGPpG~GKSsLa~~la~~le--~~~~Y~~kg~~~~sP~~e~P 148 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQGLEEKK---QILYLLGPVGGGKSSLAERLKSLME--RVPIYVLKANGERSPVNESP 148 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHHhcCCCC---ceEEEecCCCCCchHHHHHHHHHHH--hCcceeecCCCCCCCCCCCC
Confidence 466899999999999999988777664422 3689999999999999999999872 223443322 10000
Q ss_pred -----hh----hhhhhcCC-----------------------------------C-------------------CCCcCc
Q 005511 448 -----RH----TVSKLIGS-----------------------------------P-------------------PGYVGY 464 (693)
Q Consensus 448 -----~~----~~~~l~g~-----------------------------------~-------------------~~~~g~ 464 (693)
.. .+...+|- . +..+|.
T Consensus 149 L~L~p~~~~~~~le~~~gi~~r~i~g~lsP~~r~rL~e~~Gd~~~~~V~r~~~S~~~riGIg~~eP~D~~nQD~s~L~G~ 228 (644)
T PRK15455 149 LGLFDPDEDGPILEEEYGIPRRYLGTIMSPWAVKRLHEFGGDISKFRVVKVYPSILRQIAIAKTEPGDENNQDISSLVGK 228 (644)
T ss_pred CCCCChhhhHHHHHHHhCCCccccCCCCCHHHHHHHHHhCCCchheEEEEEeeccccceEEEecCCCCCCCCChhHhccc
Confidence 00 00000010 0 001111
Q ss_pred Cccch-------------hhHHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChh
Q 005511 465 TEGGQ-------------LTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSS 531 (693)
Q Consensus 465 ~~~~~-------------l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~ 531 (693)
-..+. +.+.+..+.+|++=|=|+-|++..++..||.+.++|.+....+-..-.-+.+||+.||-..
T Consensus 229 vdi~kl~~ys~~dp~aysf~G~L~~aNrGl~EFvEm~K~~~~~L~~LLtatQE~~i~~~~~~~~i~~D~vIiaHsNE~E- 307 (644)
T PRK15455 229 VDIRKLEHYAQNDPDAYSYSGGLCRANQGLLEFVEMFKAPIKVLHPLLTATQEGNYNGTEGIGAIPFDGIILAHSNESE- 307 (644)
T ss_pred eeHHhhhccCCCCCccccCCchhhhccCCcEeeHHHhcCcHHHHHHhcCCCccCcccCCCCcceeccceeEEecCCHHH-
Confidence 00011 1123334555777777999999999999999999999876555444455888999998321
Q ss_pred hhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCC-CHHHHHHHHHHHHHH
Q 005511 532 VIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQL-TKLEVKEIADIMLKE 600 (693)
Q Consensus 532 ~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l-~~~~~~~i~~~~l~~ 600 (693)
+ ..=..+..+.+|++|+ .+|.+|.. ...+=.+|.++.+..
T Consensus 308 ---------------------~-------~~F~~nk~nEA~~DRi-~~V~VPY~lr~~eE~kIYeKll~~ 348 (644)
T PRK15455 308 ---------------------W-------QTFRNNKNNEAFLDRI-YIVKVPYCLRVSEEIKIYEKLLRN 348 (644)
T ss_pred ---------------------H-------HHHhcCccchhhhceE-EEEeCCccCChhHHHHHHHHHhcC
Confidence 0 0001122568999999 88888764 444445676666543
No 427
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.90 E-value=3.9e-09 Score=90.39 Aligned_cols=73 Identities=26% Similarity=0.490 Sum_probs=60.2
Q ss_pred HHHHHHHHHhccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCC--cceeee
Q 005511 366 RLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSE--EAMIRL 440 (693)
Q Consensus 366 ~~~~~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~--~~~~~~ 440 (693)
+...++..|...++||.-+.+.+.++++..... ..|++|+. +.|.||||||||.+++.||+.+|..+ .+++..
T Consensus 15 ~~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~-~~p~KpLV-lSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~ 89 (127)
T PF06309_consen 15 NITGLEKDLQRNLFGQHLAVEVVVNAIKGHLAN-PNPRKPLV-LSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQ 89 (127)
T ss_pred CHHHHHHHHHHHccCcHHHHHHHHHHHHHHHcC-CCCCCCEE-EEeecCCCCcHHHHHHHHHHHHHhcccCCCceee
Confidence 356788899999999999999999999877543 57788875 88999999999999999999987543 344433
No 428
>PRK12377 putative replication protein; Provisional
Probab=98.89 E-value=4.3e-09 Score=103.66 Aligned_cols=144 Identities=15% Similarity=0.210 Sum_probs=81.3
Q ss_pred hhcCCCCCccCC----HHHHHHHHHHHhc--CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEecccc
Q 005511 36 AEEGKLDPVVGR----QPQIERVVQILGR--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLL 109 (693)
Q Consensus 36 ~~~~~~~~iiG~----~~~~~~l~~~l~~--~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l 109 (693)
+...+|+.+... ...+..+...... ....+++|+||||||||+|+.++++.+.. .+..+++++...+
T Consensus 68 ~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~~~l~l~G~~GtGKThLa~AIa~~l~~-------~g~~v~~i~~~~l 140 (248)
T PRK12377 68 HRKCSFANYQVQNDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLA-------KGRSVIVVTVPDV 140 (248)
T ss_pred cccCCcCCcccCChhHHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHH-------cCCCeEEEEHHHH
Confidence 344578887632 2233333333221 23478999999999999999999999865 3566777877665
Q ss_pred ccCCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhc---CCCcEEEEEechH--HHHh
Q 005511 110 VAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA---RGELQCIGATTLD--EYRK 184 (693)
Q Consensus 110 ~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~---~~~v~vI~~t~~~--~~~~ 184 (693)
.......-........++..+...+ +|+|||++..... ......|..+++ .....+|.+||.. ++..
T Consensus 141 ~~~l~~~~~~~~~~~~~l~~l~~~d--LLiIDDlg~~~~s------~~~~~~l~~ii~~R~~~~~ptiitSNl~~~~l~~ 212 (248)
T PRK12377 141 MSRLHESYDNGQSGEKFLQELCKVD--LLVLDEIGIQRET------KNEQVVLNQIIDRRTASMRSVGMLTNLNHEAMST 212 (248)
T ss_pred HHHHHHHHhccchHHHHHHHhcCCC--EEEEcCCCCCCCC------HHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHH
Confidence 4311100000001223445554444 9999999765321 123445555554 2345677778853 3322
Q ss_pred hhhcCHHHhccC
Q 005511 185 HIEKDPALERRF 196 (693)
Q Consensus 185 ~~~l~~~l~~Rf 196 (693)
. +..++.+|+
T Consensus 213 ~--~~~ri~dRl 222 (248)
T PRK12377 213 L--LGERVMDRM 222 (248)
T ss_pred H--hhHHHHHHH
Confidence 1 345555555
No 429
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.88 E-value=1.3e-07 Score=96.30 Aligned_cols=171 Identities=13% Similarity=0.149 Sum_probs=96.6
Q ss_pred EEEEeccCCCcHHHHHHHHHHHhcCCCcceeeecc--ccccchh---hhhhhcCCCCCCcCcCcc---chhhH----HHH
Q 005511 408 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDM--SEFMERH---TVSKLIGSPPGYVGYTEG---GQLTE----AVR 475 (693)
Q Consensus 408 ~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~--~~~~~~~---~~~~l~g~~~~~~g~~~~---~~l~~----~~~ 475 (693)
.++|+||+|+|||++++.+++.+... .+....+ ....... .....+|.+. .+.... ..+.. ...
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~--~~~~~~~~~~~~~~~~~l~~i~~~lG~~~--~~~~~~~~~~~l~~~l~~~~~ 120 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQE--RVVAAKLVNTRVDAEDLLRMVAADFGLET--EGRDKAALLRELEDFLIEQFA 120 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCC--CeEEeeeeCCCCCHHHHHHHHHHHcCCCC--CCCCHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999987322 2221111 1111111 1112233221 111111 12222 223
Q ss_pred cCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHH
Q 005511 476 RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNR 555 (693)
Q Consensus 476 ~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~ 555 (693)
.....+|+|||++.+++..++.|..+.+- ... ....+.+|++......
T Consensus 121 ~~~~~vliiDe~~~l~~~~~~~l~~l~~~-~~~-------~~~~~~vvl~g~~~~~------------------------ 168 (269)
T TIGR03015 121 AGKRALLVVDEAQNLTPELLEELRMLSNF-QTD-------NAKLLQIFLVGQPEFR------------------------ 168 (269)
T ss_pred CCCCeEEEEECcccCCHHHHHHHHHHhCc-ccC-------CCCeEEEEEcCCHHHH------------------------
Confidence 45567999999999998887776554432 100 0112344555432110
Q ss_pred HHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHh
Q 005511 556 IKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEE 625 (693)
Q Consensus 556 l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~ 625 (693)
..+...-...+.+|+...+.+++++.+++.+++...+.... ......+++++++.|.+.
T Consensus 169 ------~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g-----~~~~~~~~~~~~~~i~~~ 227 (269)
T TIGR03015 169 ------ETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLERAG-----NRDAPVFSEGAFDAIHRF 227 (269)
T ss_pred ------HHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcC-----CCCCCCcCHHHHHHHHHH
Confidence 00000011357788878899999999999999887776431 011235899999999884
No 430
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.88 E-value=1.9e-08 Score=111.86 Aligned_cols=124 Identities=17% Similarity=0.231 Sum_probs=80.1
Q ss_pred CCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCC-----------------------CcEEEEEechHHHHhhhhcC
Q 005511 133 SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG-----------------------ELQCIGATTLDEYRKHIEKD 189 (693)
Q Consensus 133 ~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~-----------------------~v~vI~~t~~~~~~~~~~l~ 189 (693)
.++++|||||++.|.+ ..+..|++.|+.+ ++.+|+++++.... .++
T Consensus 225 AnGGtL~LDei~~L~~--------~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~---~~d 293 (637)
T PRK13765 225 AHKGVLFIDEINTLDL--------ESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALE---NMH 293 (637)
T ss_pred CCCcEEEEeChHhCCH--------HHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHH---hhh
Confidence 3457999999999843 3566677666422 35789999885432 469
Q ss_pred HHHhccCCc----cccCC---CCHHHHHHHHHHHHHhHhhh-cCcccChHHHHHHHHhhhhhhcccC----CchhhhhHH
Q 005511 190 PALERRFQP----VKVPE---PSVDETIQILKGLRERYEIH-HKLRYTDEALVSAAQLSYQYISDRF----LPDKAIDLI 257 (693)
Q Consensus 190 ~~l~~Rf~~----i~~~~---p~~~e~~~il~~~~~~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~----~~~~~~~ll 257 (693)
|.|.+||.. +.|+. -+.+.+..+++.+.+..... .-..++++++..+.+.+.+..+.+. ..+...+++
T Consensus 294 pdL~~rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~ 373 (637)
T PRK13765 294 PALRSRIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLV 373 (637)
T ss_pred HHHHHHhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHH
Confidence 999999852 44442 22445555555444433222 2336899999999998888776653 245677788
Q ss_pred HHHhhHHHHh
Q 005511 258 DEAGSRVRLR 267 (693)
Q Consensus 258 ~~a~~~~~~~ 267 (693)
+.|...++..
T Consensus 374 r~a~~~a~~~ 383 (637)
T PRK13765 374 RVAGDIARSE 383 (637)
T ss_pred HHHHHHHHhh
Confidence 8877665443
No 431
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.88 E-value=1.2e-08 Score=92.42 Aligned_cols=126 Identities=25% Similarity=0.291 Sum_probs=76.5
Q ss_pred CCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccC------------CcccchHHHHHHHHHHHH
Q 005511 63 KNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAG------------TKYRGEFEERLKKLMEEI 130 (693)
Q Consensus 63 ~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g~~~~~l~~~~~~~ 130 (693)
+.+++|+||||||||++++.+++.+... +..++.++++..... ..............+..+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP-------GGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALA 74 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC-------CCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHH
Confidence 4688999999999999999999988432 124777776543321 111223344555677777
Q ss_pred HhCCCeEEEEeccchhhhCCCCCChHhHHH------HHhhhhcCCCcEEEEEechHHHHhhhhcCHHHhccCC-ccccCC
Q 005511 131 KQSDEIILFIDEVHTLIGAGAAEGAIDAAN------ILKPSLARGELQCIGATTLDEYRKHIEKDPALERRFQ-PVKVPE 203 (693)
Q Consensus 131 ~~~~~~vL~iDEid~l~~~~~~~~~~~~~~------~L~~~l~~~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~-~i~~~~ 203 (693)
....+.+++|||++.+..... ..... ............+|+++|... ...+..+..|+. .+.++.
T Consensus 75 ~~~~~~viiiDei~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~ 146 (148)
T smart00382 75 RKLKPDVLILDEITSLLDAEQ----EALLLLLEELRLLLLLKSEKNLTVILTTNDEK----DLGPALLRRRFDRRIVLLL 146 (148)
T ss_pred HhcCCCEEEEECCcccCCHHH----HHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCc----cCchhhhhhccceEEEecC
Confidence 776678999999999864310 00000 112333456688899988511 123445555665 555443
No 432
>PRK12377 putative replication protein; Provisional
Probab=98.87 E-value=1e-08 Score=101.10 Aligned_cols=104 Identities=22% Similarity=0.382 Sum_probs=70.2
Q ss_pred EEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCCcCcCccchhhHHHHcCCCEEEEEccC
Q 005511 408 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEI 487 (693)
Q Consensus 408 ~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEi 487 (693)
+++|+||||||||.+|.+|++.+...+..++.+...++....... |........+...+... .+|+|||+
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~--------~~~~~~~~~~l~~l~~~--dLLiIDDl 172 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHES--------YDNGQSGEKFLQELCKV--DLLVLDEI 172 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHH--------HhccchHHHHHHHhcCC--CEEEEcCC
Confidence 699999999999999999999997666777777777665431111 11000112233444444 49999999
Q ss_pred --cccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChh
Q 005511 488 --EKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSS 531 (693)
Q Consensus 488 --d~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~ 531 (693)
+..++..++.|.++++...- ...=.|+|||....
T Consensus 173 g~~~~s~~~~~~l~~ii~~R~~----------~~~ptiitSNl~~~ 208 (248)
T PRK12377 173 GIQRETKNEQVVLNQIIDRRTA----------SMRSVGMLTNLNHE 208 (248)
T ss_pred CCCCCCHHHHHHHHHHHHHHHh----------cCCCEEEEcCCCHH
Confidence 56678888999999987321 11236888997764
No 433
>PRK08116 hypothetical protein; Validated
Probab=98.87 E-value=2e-08 Score=100.99 Aligned_cols=169 Identities=18% Similarity=0.220 Sum_probs=91.4
Q ss_pred hhhhhcCCCCCccCCHH---HHHHHHHHHhc-----CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEE
Q 005511 33 TKLAEEGKLDPVVGRQP---QIERVVQILGR-----RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITL 104 (693)
Q Consensus 33 ~~~~~~~~~~~iiG~~~---~~~~l~~~l~~-----~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 104 (693)
.+.++..+|+++..-+. .+..+...+.. ....+++|+|++|||||+|+.++++.+... +.+++++
T Consensus 76 ~~~~~~~tFdnf~~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~-------~~~v~~~ 148 (268)
T PRK08116 76 DEKFRNSTFENFLFDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEK-------GVPVIFV 148 (268)
T ss_pred CHHHHhcchhcccCChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEE
Confidence 34556668887753332 22233333221 123459999999999999999999998652 5678888
Q ss_pred eccccccCCc--ccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCCcEEEEEechHHH
Q 005511 105 DMGLLVAGTK--YRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEY 182 (693)
Q Consensus 105 ~~~~l~~~~~--~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~t~~~~~ 182 (693)
+...+..... +.+........++..+...+ +|+|||++..... ......+.+++.....+ ...+|.+||....
T Consensus 149 ~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~d--lLviDDlg~e~~t--~~~~~~l~~iin~r~~~-~~~~IiTsN~~~~ 223 (268)
T PRK08116 149 NFPQLLNRIKSTYKSSGKEDENEIIRSLVNAD--LLILDDLGAERDT--EWAREKVYNIIDSRYRK-GLPTIVTTNLSLE 223 (268)
T ss_pred EHHHHHHHHHHHHhccccccHHHHHHHhcCCC--EEEEecccCCCCC--HHHHHHHHHHHHHHHHC-CCCEEEECCCCHH
Confidence 8766542110 00000111223444444444 9999999653211 11111233333333333 3567777776432
Q ss_pred HhhhhcCHHHhccCC----ccccCCCCHHHHHHHHHH
Q 005511 183 RKHIEKDPALERRFQ----PVKVPEPSVDETIQILKG 215 (693)
Q Consensus 183 ~~~~~l~~~l~~Rf~----~i~~~~p~~~e~~~il~~ 215 (693)
.=.-.++.++.+|+. .|.++.++. |..+.+.
T Consensus 224 eL~~~~~~ri~sRl~e~~~~v~~~g~d~--R~~~~~e 258 (268)
T PRK08116 224 ELKNQYGKRIYDRILEMCTPVENEGKSY--RKEIAKE 258 (268)
T ss_pred HHHHHHhHHHHHHHHHcCEEEEeeCcCh--hHHHHHH
Confidence 101124788888862 466666664 4444443
No 434
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.84 E-value=7.1e-08 Score=96.38 Aligned_cols=157 Identities=15% Similarity=0.098 Sum_probs=103.7
Q ss_pred HHHHHHHHHhcCCCCCe-EEECCCCChHHHHHHHHHHHHhcCCCCC------CCCCceEEEEeccccccCCcccchHHHH
Q 005511 50 QIERVVQILGRRTKNNP-CLIGEPGVGKTAIAEGLAQRIASGDVPD------TIEGKKVITLDMGLLVAGTKYRGEFEER 122 (693)
Q Consensus 50 ~~~~l~~~l~~~~~~~v-Ll~Gp~GtGKT~la~~la~~l~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 122 (693)
.-++|...+.....+|. ||+||+|+||+++|..+|+.+.+...+. ...+..++.+....- .. .-..+.
T Consensus 5 ~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~---~~--~I~idq 79 (290)
T PRK05917 5 AWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGK---GR--LHSIET 79 (290)
T ss_pred HHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCC---CC--cCcHHH
Confidence 34567777777665555 6999999999999999999998743221 112233444432110 00 012344
Q ss_pred HHHHHHHHH----hCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC--CCcEEEEEechHHHHhhhhcCHHHhccC
Q 005511 123 LKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--GELQCIGATTLDEYRKHIEKDPALERRF 196 (693)
Q Consensus 123 l~~~~~~~~----~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~~t~~~~~~~~~~l~~~l~~Rf 196 (693)
++.+...+. .+...|++||++|.|. .++.|.|++.+|. ..+++|..|+.++ .+.|.++|||
T Consensus 80 iR~l~~~~~~~p~e~~~kv~ii~~ad~mt--------~~AaNaLLK~LEEPp~~~~fiL~~~~~~-----~ll~TI~SRc 146 (290)
T PRK05917 80 PRAIKKQIWIHPYESPYKIYIIHEADRMT--------LDAISAFLKVLEDPPQHGVIILTSAKPQ-----RLPPTIRSRS 146 (290)
T ss_pred HHHHHHHHhhCccCCCceEEEEechhhcC--------HHHHHHHHHHhhcCCCCeEEEEEeCChh-----hCcHHHHhcc
Confidence 555555553 2445699999999995 4489999999984 4577777777776 6899999999
Q ss_pred CccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhh
Q 005511 197 QPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQY 243 (693)
Q Consensus 197 ~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 243 (693)
+.+.|+++.. ..++++....++.++.|.
T Consensus 147 q~~~~~~~~~-------------------~~i~~~~~~~l~~~~~g~ 174 (290)
T PRK05917 147 LSIHIPMEEK-------------------TLVSKEDIAYLIGYAQGK 174 (290)
T ss_pred eEEEccchhc-------------------cCCCHHHHHHHHHHhCCC
Confidence 9999987511 134566666666666554
No 435
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.84 E-value=2.7e-08 Score=103.48 Aligned_cols=171 Identities=17% Similarity=0.268 Sum_probs=109.4
Q ss_pred ceEEEEeccCCCcHHHHHHHHHHHhcCCCc--ceeeeccccccchhhhhhhcCCCCCCcCcCccchhhHHHHcCCCEEEE
Q 005511 406 IASFIFSGPTGVGKSELAKALAAYYFGSEE--AMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVL 483 (693)
Q Consensus 406 ~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~--~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~ 483 (693)
...++|+||+|+|||.|++++++.....+. .++.+....+..+. +..+.. + ....+.... .-.+|+
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~-v~a~~~------~--~~~~Fk~~y---~~dlll 180 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDF-VKALRD------N--EMEKFKEKY---SLDLLL 180 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHH-HHHHHh------h--hHHHHHHhh---ccCeee
Confidence 345999999999999999999999844333 34444443333210 000000 0 001111111 224899
Q ss_pred EccCcccCH--HHHHHH----HHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHH
Q 005511 484 FDEIEKAHP--DVFNMM----LQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIK 557 (693)
Q Consensus 484 iDEid~l~~--~~~~~L----l~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~ 557 (693)
||+++.+.. ..+..| ..+.++|. .+|+|+...+..+..
T Consensus 181 IDDiq~l~gk~~~qeefFh~FN~l~~~~k--------------qIvltsdr~P~~l~~---------------------- 224 (408)
T COG0593 181 IDDIQFLAGKERTQEEFFHTFNALLENGK--------------QIVLTSDRPPKELNG---------------------- 224 (408)
T ss_pred echHhHhcCChhHHHHHHHHHHHHHhcCC--------------EEEEEcCCCchhhcc----------------------
Confidence 999999744 334444 44444432 588888765543321
Q ss_pred HHHHHHHhhcCchhHhhccCc--EEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcch
Q 005511 558 SLVTEELKQYFRPEFLNRLDE--MIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARP 635 (693)
Q Consensus 558 ~~~~~~l~~~~~~~l~~R~~~--~v~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~ 635 (693)
+.|.|.+||.- ++...||+.+.+..|+.+..+. .+ +.+++++..+++.. +..+ .|+
T Consensus 225 ----------~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~-------~~--~~i~~ev~~~la~~-~~~n--vRe 282 (408)
T COG0593 225 ----------LEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAED-------RG--IEIPDEVLEFLAKR-LDRN--VRE 282 (408)
T ss_pred ----------ccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHh-------cC--CCCCHHHHHHHHHH-hhcc--HHH
Confidence 56899999954 6888999999999999773322 23 45999999999985 5555 888
Q ss_pred HHHHHHHHHHH
Q 005511 636 LRRAIMRLLED 646 (693)
Q Consensus 636 l~~~i~~~i~~ 646 (693)
|..++.++...
T Consensus 283 LegaL~~l~~~ 293 (408)
T COG0593 283 LEGALNRLDAF 293 (408)
T ss_pred HHHHHHHHHHH
Confidence 88888766544
No 436
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.84 E-value=2.9e-08 Score=105.95 Aligned_cols=221 Identities=14% Similarity=0.200 Sum_probs=124.4
Q ss_pred HHHHHhccccChHHHHHHHHHHHHHHhhcCC-C--CCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeecccccc
Q 005511 370 MEETLHKRVIGQDEAVKAISRAIRRARVGLK-N--PNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFM 446 (693)
Q Consensus 370 ~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~-~--~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~ 446 (693)
+...+...|.|.+.+++.+.-++--....-. . .-+...++||+|.||||||.+.+.+++.+.+. -...-..+.-.
T Consensus 423 La~SiAPsIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg--~yTSGkGsSav 500 (804)
T KOG0478|consen 423 LARSIAPSIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRG--VYTSGKGSSAV 500 (804)
T ss_pred HHHhhchhhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcc--eeecCCccchh
Confidence 4455666788888887777655532211000 0 11233579999999999999999999987221 01110111000
Q ss_pred chhhhhhhcCCCCCCcCcC-ccchh---hHHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCC-CCeeecC-Ce
Q 005511 447 ERHTVSKLIGSPPGYVGYT-EGGQL---TEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSK-GRTVDFK-NT 520 (693)
Q Consensus 447 ~~~~~~~l~g~~~~~~g~~-~~~~l---~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~-~~~~~~~-~~ 520 (693)
.| ..|+..+ +.+++ .+++-.+.+||=.|||+||++....+.|+++||..+++... |--...+ ++
T Consensus 501 ------GL----TayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~ 570 (804)
T KOG0478|consen 501 ------GL----TAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARC 570 (804)
T ss_pred ------cc----eeeEEecCccceeeeecCcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeeccccc
Confidence 00 0022211 01111 13344467889999999999999999999999987776554 3211221 44
Q ss_pred EEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcE-EEcCCCCHHHHHHHHHHHHH
Q 005511 521 LLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEM-IVFRQLTKLEVKEIADIMLK 599 (693)
Q Consensus 521 ~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~-v~f~~l~~~~~~~i~~~~l~ 599 (693)
-+++++|+.... |..+..--+++ .++|.|++|||-+ +.+++.++..=+.+.++...
T Consensus 571 SVLAaANP~~sk---------ynp~k~i~eNI--------------~LpptLLSRFDLIylllD~~DE~~Dr~La~Hivs 627 (804)
T KOG0478|consen 571 SVLAAANPIRSK---------YNPNKSIIENI--------------NLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVA 627 (804)
T ss_pred eeeeeecccccc---------CCCCCchhhcc--------------CCChhhhhhhcEEEEEecCcchhHHHHHHHHHHH
Confidence 466666643221 11111000111 1789999999886 56667766633445544433
Q ss_pred HHHH-------------------HHhcCCCeEEeCHHHHHHHHHh
Q 005511 600 EVFD-------------------RLKTKDIELQVTERFRERVVEE 625 (693)
Q Consensus 600 ~~~~-------------------~~~~~~~~l~~~~~~~~~l~~~ 625 (693)
.+.+ .++...+...+.+++.+.+...
T Consensus 628 Ly~e~~~~~~~~~~d~~~lr~yi~yArk~i~p~l~~ea~~~l~~a 672 (804)
T KOG0478|consen 628 LYPETGEKQGSEAIDMNLLRDYIRYARKNIHPALSPEASQALIQA 672 (804)
T ss_pred hcccccccchhHHHhHHHHHHHHHHHhccCCccccHHHHHHHHHH
Confidence 2221 1223345567888888877765
No 437
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.84 E-value=1.2e-08 Score=100.25 Aligned_cols=147 Identities=16% Similarity=0.232 Sum_probs=84.5
Q ss_pred hhhhhcCCCCCccCC----HHHHHHHHHHHhc--CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEec
Q 005511 33 TKLAEEGKLDPVVGR----QPQIERVVQILGR--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM 106 (693)
Q Consensus 33 ~~~~~~~~~~~iiG~----~~~~~~l~~~l~~--~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 106 (693)
.+.++..+|+++.-. ...+..+...... ....+++|+|+||||||+|+.+++..+.. .+..+++++.
T Consensus 63 ~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~-------~g~~v~~it~ 135 (244)
T PRK07952 63 RPLHQNCSFENYRVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLL-------RGKSVLIITV 135 (244)
T ss_pred CccccCCccccccCCCchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHh-------cCCeEEEEEH
Confidence 445566788887532 3344555555433 22358999999999999999999999865 2667888887
Q ss_pred cccccCCccc-chHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhc---CCCcEEEEEechH--
Q 005511 107 GLLVAGTKYR-GEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA---RGELQCIGATTLD-- 180 (693)
Q Consensus 107 ~~l~~~~~~~-g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~---~~~v~vI~~t~~~-- 180 (693)
..+....... .........++..+.... +|+|||++.... ... ....|..+++ .....+|.+||..
T Consensus 136 ~~l~~~l~~~~~~~~~~~~~~l~~l~~~d--lLvIDDig~~~~---s~~---~~~~l~~Ii~~Ry~~~~~tiitSNl~~~ 207 (244)
T PRK07952 136 ADIMSAMKDTFSNSETSEEQLLNDLSNVD--LLVIDEIGVQTE---SRY---EKVIINQIVDRRSSSKRPTGMLTNSNME 207 (244)
T ss_pred HHHHHHHHHHHhhccccHHHHHHHhccCC--EEEEeCCCCCCC---CHH---HHHHHHHHHHHHHhCCCCEEEeCCCCHH
Confidence 6665211100 000111234445555444 999999987631 111 2234444443 2345677777753
Q ss_pred HHHhhhhcCHHHhccC
Q 005511 181 EYRKHIEKDPALERRF 196 (693)
Q Consensus 181 ~~~~~~~l~~~l~~Rf 196 (693)
++... +...+.+|+
T Consensus 208 ~l~~~--~g~ri~sRl 221 (244)
T PRK07952 208 EMTKL--LGERVMDRM 221 (244)
T ss_pred HHHHH--hChHHHHHH
Confidence 33222 355555555
No 438
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.83 E-value=1.7e-07 Score=99.52 Aligned_cols=252 Identities=17% Similarity=0.208 Sum_probs=143.1
Q ss_pred HHHHHHHHhccccChHHHHHHHHHHHHHH---hhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccc
Q 005511 367 LLKMEETLHKRVIGQDEAVKAISRAIRRA---RVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMS 443 (693)
Q Consensus 367 ~~~~~~~l~~~v~g~~~~~~~l~~~~~~~---~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~ 443 (693)
..++...++..|.|.+.++.-|.-.+--. ..+...+-++..|++++|.|||||+.+.++.+..+.+ ..+.. +
T Consensus 336 y~~lv~Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR---~vYts--G 410 (764)
T KOG0480|consen 336 YKNLVNSLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPR---SVYTS--G 410 (764)
T ss_pred HHHHHHhhCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCc---ceEec--C
Confidence 45567788899999999887776555211 1111233345568999999999999999999987632 12211 1
Q ss_pred cccchhhhhhhcCCCCCCcCcCccchh---hHHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCe
Q 005511 444 EFMERHTVSKLIGSPPGYVGYTEGGQL---TEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNT 520 (693)
Q Consensus 444 ~~~~~~~~~~l~g~~~~~~g~~~~~~l---~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~ 520 (693)
... +...|.-. -+-..+.+.+ .+++--+.+||=.|||+||++..-|.+|+..||..+++....
T Consensus 411 kaS---SaAGLTaa---VvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtISIaKA-------- 476 (764)
T KOG0480|consen 411 KAS---SAAGLTAA---VVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAKA-------- 476 (764)
T ss_pred ccc---ccccceEE---EEecCCCCceeeecCcEEEccCceEEechhcccChHhHHHHHHHHHhheehheec--------
Confidence 110 00001000 0001111111 122333668999999999999999999999999988776542
Q ss_pred EEEEecCCChhhhhhcccccc-cccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcE-EEcCCCCHHHHHHHHHHHH
Q 005511 521 LLIMTSNVGSSVIEKGGRRIG-FDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEM-IVFRQLTKLEVKEIADIML 598 (693)
Q Consensus 521 ~iI~~tn~~~~~i~~~~~~~~-f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~-v~f~~l~~~~~~~i~~~~l 598 (693)
=+++|-|....+|...+.--| |+....-.++ =.+++++++|||-+ |.++.+++..=..|..+.+
T Consensus 477 Gv~aTLnARtSIlAAANPv~GhYdR~ktl~eN--------------i~msApimSRFDL~FiLlD~~nE~~D~~ia~hIl 542 (764)
T KOG0480|consen 477 GVVATLNARTSILAAANPVGGHYDRKKTLREN--------------INMSAPIMSRFDLFFILLDDCNEVVDYAIARHIL 542 (764)
T ss_pred ceEEeecchhhhhhhcCCcCCccccccchhhh--------------cCCCchhhhhhcEEEEEecCCchHHHHHHHHHHH
Confidence 244444444444433322222 2111111111 01789999999986 5566677665555555554
Q ss_pred HHHH------------------HHHh-cCCCeEEeCHHHHHHHHHh-------c------cCCCCCcchHHHHHHHHHHH
Q 005511 599 KEVF------------------DRLK-TKDIELQVTERFRERVVEE-------G------YNPSYGARPLRRAIMRLLED 646 (693)
Q Consensus 599 ~~~~------------------~~~~-~~~~~l~~~~~~~~~l~~~-------~------~~~~~g~r~l~~~i~~~i~~ 646 (693)
.... +.++ .+.+...++.++.+.|.++ . -+|..-+|+|++.|. +..
T Consensus 543 d~h~~i~~~~~~~~~~~~e~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIR--LsE 620 (764)
T KOG0480|consen 543 DLHRGIDDATERVCVYTLEQVRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIR--LSE 620 (764)
T ss_pred HHhccccccccccccccHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHH--HHH
Confidence 3221 1110 1144556777777776654 0 023345888888877 666
Q ss_pred HHHHHHH
Q 005511 647 SMAEKML 653 (693)
Q Consensus 647 ~l~~~~l 653 (693)
++++.=+
T Consensus 621 A~Ar~~~ 627 (764)
T KOG0480|consen 621 ARARVEC 627 (764)
T ss_pred HHHhhhh
Confidence 6665444
No 439
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.82 E-value=1.2e-07 Score=99.32 Aligned_cols=202 Identities=17% Similarity=0.143 Sum_probs=116.5
Q ss_pred HhhhhhhhhcCCCCCccCCHHHHHHHHHHHh-----cCC-CC-CeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceE
Q 005511 29 GTNLTKLAEEGKLDPVVGRQPQIERVVQILG-----RRT-KN-NPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKV 101 (693)
Q Consensus 29 ~~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~-----~~~-~~-~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~ 101 (693)
...|.+++.|.+.+++--+...+..+..++. .+. +. -+||+||+||||||.++.+++++ |..+
T Consensus 69 ~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel----------g~~~ 138 (634)
T KOG1970|consen 69 FELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL----------GYQL 138 (634)
T ss_pred cchhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh----------Ccee
Confidence 4579999999999999999999999888887 322 33 45688999999999999999999 5555
Q ss_pred EEEec-------cccccCC-----cccc---hHHHHHHHH--HHHH------HhCCCeEEEEeccchhhhCCCCCChHhH
Q 005511 102 ITLDM-------GLLVAGT-----KYRG---EFEERLKKL--MEEI------KQSDEIILFIDEVHTLIGAGAAEGAIDA 158 (693)
Q Consensus 102 ~~~~~-------~~l~~~~-----~~~g---~~~~~l~~~--~~~~------~~~~~~vL~iDEid~l~~~~~~~~~~~~ 158 (693)
....- ..+...+ .+.. .++..+... ...+ ....+.+|+|||+...+... .....
T Consensus 139 ~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d---~~~~f 215 (634)
T KOG1970|consen 139 IEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD---DSETF 215 (634)
T ss_pred eeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh---hHHHH
Confidence 54431 1111101 1111 111111111 0111 12345689999999886542 22335
Q ss_pred HHHHhhhhcCCCcEEEEE-echH------HHHhhhhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhh-cCcccC-
Q 005511 159 ANILKPSLARGELQCIGA-TTLD------EYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIH-HKLRYT- 229 (693)
Q Consensus 159 ~~~L~~~l~~~~v~vI~~-t~~~------~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~-~~~~~~- 229 (693)
.+.|+.+...+...+|.+ |... .+. .+..+-...-|...|.|.+-...-..+.|..++...... .++.+.
T Consensus 216 ~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~r-lf~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~ 294 (634)
T KOG1970|consen 216 REVLRLYVSIGRCPLIFIITDSLSNGNNNQDR-LFPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPD 294 (634)
T ss_pred HHHHHHHHhcCCCcEEEEEeccccCCCcchhh-hchhhhhhccCcceEeecCCcHHHHHHHHHHHHHHhcccccCCcCch
Confidence 566665555555433333 3221 111 111111222266689999999988888888777642111 112222
Q ss_pred hHHHHHHHHhhhhhh
Q 005511 230 DEALVSAAQLSYQYI 244 (693)
Q Consensus 230 ~~~l~~l~~~~~~~~ 244 (693)
...++.++..+.|.+
T Consensus 295 ~~~v~~i~~~s~GDI 309 (634)
T KOG1970|consen 295 TAEVELICQGSGGDI 309 (634)
T ss_pred hHHHHHHHHhcCccH
Confidence 345666666666654
No 440
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.82 E-value=2.4e-08 Score=90.54 Aligned_cols=118 Identities=24% Similarity=0.240 Sum_probs=68.6
Q ss_pred EEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhh---hcC-CCCCCcCcCccchhhHHHHcCCCEEEE
Q 005511 408 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSK---LIG-SPPGYVGYTEGGQLTEAVRRRPYTVVL 483 (693)
Q Consensus 408 ~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~---l~g-~~~~~~g~~~~~~l~~~~~~~~~~vl~ 483 (693)
+++|+||||||||++++.++..+......++.+++........... ... ......+......+...++.....+||
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vii 83 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLI 83 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 6999999999999999999999854433578888776553322110 000 001111111123445555555568999
Q ss_pred EccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCC
Q 005511 484 FDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNV 528 (693)
Q Consensus 484 iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~ 528 (693)
+||++.+.............. ...........+..+|+++|.
T Consensus 84 iDei~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 84 LDEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred EECCcccCCHHHHHHHHhhhh---hHHHHHHHhcCCCEEEEEeCC
Confidence 999999987766654432100 000000012335678888884
No 441
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.79 E-value=6.4e-08 Score=106.12 Aligned_cols=176 Identities=20% Similarity=0.315 Sum_probs=111.5
Q ss_pred CCCCccCCHHHHHHHHHHHhc--CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCcccc
Q 005511 40 KLDPVVGRQPQIERVVQILGR--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRG 117 (693)
Q Consensus 40 ~~~~iiG~~~~~~~l~~~l~~--~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 117 (693)
.+..++|....++++...+.. ....+++++|++||||+++|+++...... .+.+++.++|..+...
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~-------~~~~~v~v~c~~~~~~----- 204 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDR-------KDKRFVAINCAAIPEN----- 204 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCc-------CCCCeEEEECCCCChH-----
Confidence 566799999888887776653 45678999999999999999999876532 2567899998765310
Q ss_pred hHHHHHHHHHH---------------HHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCC-------------
Q 005511 118 EFEERLKKLME---------------EIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG------------- 169 (693)
Q Consensus 118 ~~~~~l~~~~~---------------~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~------------- 169 (693)
..+ ..+|+ .+....+++|||||++.|. ...+..|...++.+
T Consensus 205 ~~~---~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~--------~~~q~~l~~~l~~~~~~~~~~~~~~~~ 273 (445)
T TIGR02915 205 LLE---SELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLP--------LNLQAKLLRFLQERVIERLGGREEIPV 273 (445)
T ss_pred HHH---HHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCC--------HHHHHHHHHHHhhCeEEeCCCCceeee
Confidence 000 11111 1223456799999999994 34677777777643
Q ss_pred CcEEEEEechHHHH--hhhhcCHHHhccCCccccCCCCHHHHHH----HHHHHHHhHhhhcC---cccChHHHHHHHH
Q 005511 170 ELQCIGATTLDEYR--KHIEKDPALERRFQPVKVPEPSVDETIQ----ILKGLRERYEIHHK---LRYTDEALVSAAQ 238 (693)
Q Consensus 170 ~v~vI~~t~~~~~~--~~~~l~~~l~~Rf~~i~~~~p~~~e~~~----il~~~~~~~~~~~~---~~~~~~~l~~l~~ 238 (693)
.+.+|++|+..... ..-.+.+.|..|+..+.+..|+..+|.+ +.+.+++++....+ ..++++++..+..
T Consensus 274 ~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 351 (445)
T TIGR02915 274 DVRIVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEA 351 (445)
T ss_pred ceEEEEecCCCHHHHHHcCCccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHh
Confidence 36788888764311 0112456677788755555555555544 45555554432222 3567777666654
No 442
>PRK08181 transposase; Validated
Probab=98.79 E-value=2.4e-08 Score=99.68 Aligned_cols=132 Identities=17% Similarity=0.223 Sum_probs=76.4
Q ss_pred CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCcccchHHHHHHHHHHHHHhCCCeEEEE
Q 005511 61 RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFI 140 (693)
Q Consensus 61 ~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~i 140 (693)
....|++|+||||||||+|+.++++.+.. .+..+++++...+..... ...........+..+.+.+ +|+|
T Consensus 104 ~~~~nlll~Gp~GtGKTHLa~Aia~~a~~-------~g~~v~f~~~~~L~~~l~-~a~~~~~~~~~l~~l~~~d--LLII 173 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSHLAAAIGLALIE-------NGWRVLFTRTTDLVQKLQ-VARRELQLESAIAKLDKFD--LLIL 173 (269)
T ss_pred hcCceEEEEecCCCcHHHHHHHHHHHHHH-------cCCceeeeeHHHHHHHHH-HHHhCCcHHHHHHHHhcCC--EEEE
Confidence 35678999999999999999999998854 366788887766543110 0000112233445544444 9999
Q ss_pred eccchhhhCCCCCChHhHHHHHhhhhcCCCcEEEEEech--HHHHhhhh---cCHHHhccC-C---ccccCCCCH
Q 005511 141 DEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTL--DEYRKHIE---KDPALERRF-Q---PVKVPEPSV 206 (693)
Q Consensus 141 DEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~t~~--~~~~~~~~---l~~~l~~Rf-~---~i~~~~p~~ 206 (693)
||++.+... ......+.+++..-.++ -.+|.+||. .+|...+. +..++.+|+ + .+.|.-.|.
T Consensus 174 DDlg~~~~~--~~~~~~Lf~lin~R~~~--~s~IiTSN~~~~~w~~~~~D~~~a~aildRL~h~~~~i~~~g~s~ 244 (269)
T PRK08181 174 DDLAYVTKD--QAETSVLFELISARYER--RSILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMNVESY 244 (269)
T ss_pred eccccccCC--HHHHHHHHHHHHHHHhC--CCEEEEcCCCHHHHHHhcCCccchhhHHHhhhcCceEEecCCccc
Confidence 999976432 12222344445444444 356666665 33433321 223555665 2 456665554
No 443
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.77 E-value=5.8e-09 Score=108.35 Aligned_cols=251 Identities=17% Similarity=0.181 Sum_probs=127.0
Q ss_pred HHHHHhccccChHHHHHHHHHHHHHHhhcCCCC----CCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccc
Q 005511 370 MEETLHKRVIGQDEAVKAISRAIRRARVGLKNP----NRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEF 445 (693)
Q Consensus 370 ~~~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~----~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~ 445 (693)
+.+.+.-.++|.+.++..+.-++-.... ...+ .+...|+||+|.||||||.+.+.+++... . -+.......
T Consensus 18 l~~s~aP~i~g~~~iK~aill~L~~~~~-~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~p---r-~v~~~g~~~ 92 (331)
T PF00493_consen 18 LANSIAPSIYGHEDIKKAILLQLFGGVE-KNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAP---R-SVYTSGKGS 92 (331)
T ss_dssp CHHHCSSTTTT-HHHHHHHCCCCTT--S-CCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-S---S-EEEEECCGS
T ss_pred HHHHhCCcCcCcHHHHHHHHHHHHhccc-cccccccccccccceeeccchhhhHHHHHHHHHhhCC---c-eEEECCCCc
Confidence 3445566788877765544333221110 0111 13345899999999999999998876641 1 122221111
Q ss_pred cchhhhhhhcCCCCCCcCcCccchhhHHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCC-CCeeec-CCeEEE
Q 005511 446 MERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSK-GRTVDF-KNTLLI 523 (693)
Q Consensus 446 ~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~-~~~~~~-~~~~iI 523 (693)
. ...|+..........+-..-.+++-.+.+||.+|||+|++.....+.|+.+||.+.++... |-.... .++-++
T Consensus 93 s----~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svl 168 (331)
T PF00493_consen 93 S----AAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVL 168 (331)
T ss_dssp T----CCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEE
T ss_pred c----cCCccceeccccccceeEEeCCchhcccCceeeecccccccchHHHHHHHHHHcCeeccchhhhcccccchhhhH
Confidence 1 0111111000000000000124566678899999999999999999999999999998876 433333 378899
Q ss_pred EecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEc-CCCCHHHHHHHHHHHHHHHH
Q 005511 524 MTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVF-RQLTKLEVKEIADIMLKEVF 602 (693)
Q Consensus 524 ~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f-~~l~~~~~~~i~~~~l~~~~ 602 (693)
+++|+...... ......+.. .+++.|++|||-++.+ ++++.+.=..+.+..++...
T Consensus 169 aa~NP~~g~~~---------~~~~~~~ni--------------~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~~ 225 (331)
T PF00493_consen 169 AAANPKFGRYD---------PNKSLSENI--------------NLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSHR 225 (331)
T ss_dssp EEE--TT--S----------TTS-CGCCT---------------S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT-
T ss_pred HHHhhhhhhcc---------hhhhhHHhc--------------ccchhhHhhcCEEEEeccccccccccccceEEEeccc
Confidence 99996543211 111000110 1789999999988665 56676655566665554332
Q ss_pred HHH-------------------------hcCCCeEEeCHHHHHHHHHhccC------------CCCCcchHHHHHHHHHH
Q 005511 603 DRL-------------------------KTKDIELQVTERFRERVVEEGYN------------PSYGARPLRRAIMRLLE 645 (693)
Q Consensus 603 ~~~-------------------------~~~~~~l~~~~~~~~~l~~~~~~------------~~~g~r~l~~~i~~~i~ 645 (693)
... ....+...+++++.++|.++ |- .....|.|...|. +.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~-Yv~lR~~~~~~~~~~~iT~R~LeSLIR--Ls 302 (331)
T PF00493_consen 226 NGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELIINY-YVELRKESKSNNKSIPITIRQLESLIR--LS 302 (331)
T ss_dssp --S--------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHH-HCCCCHCHHCHSS-B-SSCCCCCHHHH--HH
T ss_pred cccccccccccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHHHH-HHHhcccccccccccccchhhHHHHHH--HH
Confidence 110 01134567889998888765 21 1234666766666 55
Q ss_pred HHHHHHHHhc
Q 005511 646 DSMAEKMLAR 655 (693)
Q Consensus 646 ~~l~~~~l~~ 655 (693)
.+.|+.-++.
T Consensus 303 eA~AKl~lr~ 312 (331)
T PF00493_consen 303 EAHAKLRLRD 312 (331)
T ss_dssp HHHHHCTTSS
T ss_pred HHHHHHhccC
Confidence 5666655543
No 444
>PF13173 AAA_14: AAA domain
Probab=98.77 E-value=2.6e-08 Score=88.70 Aligned_cols=124 Identities=20% Similarity=0.248 Sum_probs=79.6
Q ss_pred CCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCcccchHHHHHHHHHHHHHhCCCeEEEEecc
Q 005511 64 NNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEV 143 (693)
Q Consensus 64 ~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEi 143 (693)
+.++|+||.||||||+++.+++.+. ...+++++++........ ....+...+......++.++||||+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~--------~~~~~~yi~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~iDEi 70 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL--------PPENILYINFDDPRDRRL----ADPDLLEYFLELIKPGKKYIFIDEI 70 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc--------ccccceeeccCCHHHHHH----hhhhhHHHHHHhhccCCcEEEEehh
Confidence 5678999999999999999998884 135677887765432110 0000222222222225679999999
Q ss_pred chhhhCCCCCChHhHHHHHhhhhcCC-CcEEEEEechHHHHhhhhcCHHHhccCCccccCCCCHHHH
Q 005511 144 HTLIGAGAAEGAIDAANILKPSLARG-ELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDET 209 (693)
Q Consensus 144 d~l~~~~~~~~~~~~~~~L~~~l~~~-~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~ 209 (693)
+.+- +....++.+.+.+ .+.+|.+++....... .....+..|...+++.+++..|-
T Consensus 71 q~~~---------~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~-~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 71 QYLP---------DWEDALKFLVDNGPNIKIILTGSSSSLLSK-DIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred hhhc---------cHHHHHHHHHHhccCceEEEEccchHHHhh-cccccCCCeEEEEEECCCCHHHh
Confidence 9872 2566677777665 5677777665543211 24556667888889999988763
No 445
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.76 E-value=2.4e-07 Score=90.41 Aligned_cols=133 Identities=22% Similarity=0.320 Sum_probs=83.4
Q ss_pred EEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCCcCcCccchhhHHHHcCCCEEEEEccC
Q 005511 408 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEI 487 (693)
Q Consensus 408 ~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEi 487 (693)
+-.+.||+|||||+..+.+|+.+ +..++.++|++..+...+.+ .+.+.+.. ++++.|||+
T Consensus 34 ~~~~~GpagtGKtetik~La~~l---G~~~~vfnc~~~~~~~~l~r---------------il~G~~~~--GaW~cfdef 93 (231)
T PF12774_consen 34 GGALSGPAGTGKTETIKDLARAL---GRFVVVFNCSEQMDYQSLSR---------------ILKGLAQS--GAWLCFDEF 93 (231)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCT---T--EEEEETTSSS-HHHHHH---------------HHHHHHHH--T-EEEEETC
T ss_pred CCCCcCCCCCCchhHHHHHHHHh---CCeEEEecccccccHHHHHH---------------HHHHHhhc--Cchhhhhhh
Confidence 36789999999999999999998 88999999998876544433 23344443 579999999
Q ss_pred cccCHHHHHHHHHHhhc-------c--eeeCCCCCeeecC-CeEEEEecCCChhhhhhcccccccccCcCcccchHHHHH
Q 005511 488 EKAHPDVFNMMLQILED-------G--RLTDSKGRTVDFK-NTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIK 557 (693)
Q Consensus 488 d~l~~~~~~~Ll~~le~-------~--~~~~~~~~~~~~~-~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~ 557 (693)
++++.+++..+.+.+.. + .+.. .|..+... ++-+++|.|.+-. |
T Consensus 94 nrl~~~vLS~i~~~i~~i~~al~~~~~~~~~-~g~~i~l~~~~~iFiT~np~y~---------g---------------- 147 (231)
T PF12774_consen 94 NRLSEEVLSVISQQIQSIQDALRAKQKSFTL-EGQEIKLNPNCGIFITMNPGYA---------G---------------- 147 (231)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHCTSSEEEE-TTCEEE--TT-EEEEEE-B-CC---------C----------------
T ss_pred hhhhHHHHHHHHHHHHHHHHhhccccccccc-CCCEEEEccceeEEEeeccccC---------C----------------
Confidence 99999887766555432 1 2222 24444443 5667778775421 0
Q ss_pred HHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHH
Q 005511 558 SLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIA 594 (693)
Q Consensus 558 ~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~ 594 (693)
...+++.|..-| +.|.+..||...+.++.
T Consensus 148 -------r~~LP~nLk~lF-Rpvam~~PD~~~I~ei~ 176 (231)
T PF12774_consen 148 -------RSELPENLKALF-RPVAMMVPDLSLIAEIL 176 (231)
T ss_dssp -------C--S-HHHCTTE-EEEE--S--HHHHHHHH
T ss_pred -------cccCCHhHHHHh-heeEEeCCCHHHHHHHH
Confidence 001677777777 88999999888877776
No 446
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.75 E-value=7.6e-09 Score=93.46 Aligned_cols=129 Identities=24% Similarity=0.401 Sum_probs=79.4
Q ss_pred cCCHHHHHHHHHHHhc--CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCcccchHHHH
Q 005511 45 VGRQPQIERVVQILGR--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEER 122 (693)
Q Consensus 45 iG~~~~~~~l~~~l~~--~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 122 (693)
||....++++.+.+.. ....+|+|+|++||||+++|+++.+..... ...++.+++....
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~-------~~~~~~~~~~~~~------------ 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRA-------NGPFIVIDCASLP------------ 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTC-------CS-CCCCCHHCTC------------
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCcc-------CCCeEEechhhCc------------
Confidence 5777777777776654 567889999999999999999998765321 2233444443321
Q ss_pred HHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhc---CCCcEEEEEechHHHH--hhhhcCHHHhccCC
Q 005511 123 LKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA---RGELQCIGATTLDEYR--KHIEKDPALERRFQ 197 (693)
Q Consensus 123 l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~---~~~v~vI~~t~~~~~~--~~~~l~~~l~~Rf~ 197 (693)
.+++.. ..+..|||+|+|.+.+ +.+..|...++ ...+.+|++++.+-.. ..-.+++.|..||.
T Consensus 62 -~~~l~~---a~~gtL~l~~i~~L~~--------~~Q~~L~~~l~~~~~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~ 129 (138)
T PF14532_consen 62 -AELLEQ---AKGGTLYLKNIDRLSP--------EAQRRLLDLLKRQERSNVRLIASSSQDLEELVEEGRFSPDLYYRLS 129 (138)
T ss_dssp -HHHHHH---CTTSEEEEECGCCS-H--------HHHHHHHHHHHHCTTTTSEEEEEECC-CCCHHHHSTHHHHHHHHCS
T ss_pred -HHHHHH---cCCCEEEECChHHCCH--------HHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHhhccchhHHHHHHhC
Confidence 223333 3556999999999943 36666666665 3568888888754311 11135677777887
Q ss_pred ccccCCC
Q 005511 198 PVKVPEP 204 (693)
Q Consensus 198 ~i~~~~p 204 (693)
.+.+..|
T Consensus 130 ~~~i~lP 136 (138)
T PF14532_consen 130 QLEIHLP 136 (138)
T ss_dssp TCEEEE-
T ss_pred CCEEeCC
Confidence 4433333
No 447
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.75 E-value=2.8e-07 Score=101.72 Aligned_cols=176 Identities=21% Similarity=0.290 Sum_probs=110.1
Q ss_pred CCCCccCCHHHHHHHHHHHhc--CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCcccc
Q 005511 40 KLDPVVGRQPQIERVVQILGR--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRG 117 (693)
Q Consensus 40 ~~~~iiG~~~~~~~l~~~l~~--~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 117 (693)
.+.+++|....++.+...+.. ....++++.|++|||||++|+++.+.... .+.+++.++|+.+...
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~-------~~~~~i~i~c~~~~~~----- 203 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPR-------AKAPFIALNMAAIPKD----- 203 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCC-------CCCCeEeeeCCCCCHH-----
Confidence 466899999888887766543 44678999999999999999999886532 3568999999766310
Q ss_pred hHHHHHHHHHH---------------HHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCC------------
Q 005511 118 EFEERLKKLME---------------EIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGE------------ 170 (693)
Q Consensus 118 ~~~~~l~~~~~---------------~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~------------ 170 (693)
..-..+|. ......++.|||||++.|.. +.+..|..+++.+.
T Consensus 204 ---~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~--------~~q~~L~~~l~~~~~~~~~~~~~~~~ 272 (469)
T PRK10923 204 ---LIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPL--------DVQTRLLRVLADGQFYRVGGYAPVKV 272 (469)
T ss_pred ---HHHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCH--------HHHHHHHHHHhcCcEEeCCCCCeEEe
Confidence 00111111 11233456899999999943 46777777776443
Q ss_pred -cEEEEEechHHHH--hhhhcCHHHhccCCccccCCCCHH----HHHHHHHHHHHhHhhhcC---cccChHHHHHHHH
Q 005511 171 -LQCIGATTLDEYR--KHIEKDPALERRFQPVKVPEPSVD----ETIQILKGLRERYEIHHK---LRYTDEALVSAAQ 238 (693)
Q Consensus 171 -v~vI~~t~~~~~~--~~~~l~~~l~~Rf~~i~~~~p~~~----e~~~il~~~~~~~~~~~~---~~~~~~~l~~l~~ 238 (693)
+.+|++|+..... ..-.+.+.|..||..+.+..|+.. +...+++.+++++....+ ..++++++..+.+
T Consensus 273 ~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 350 (469)
T PRK10923 273 DVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTR 350 (469)
T ss_pred eEEEEEeCCCCHHHHHHcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHh
Confidence 4788888754211 111245778888874444444443 455555555554432222 2356666655543
No 448
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.73 E-value=3.9e-07 Score=92.46 Aligned_cols=165 Identities=13% Similarity=0.045 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHhcCCCCCe-EEECCCCChHHHHHHHHHHHHhcCCC---CCCCCCceEEEEeccccccCCcccchHHHHH
Q 005511 48 QPQIERVVQILGRRTKNNP-CLIGEPGVGKTAIAEGLAQRIASGDV---PDTIEGKKVITLDMGLLVAGTKYRGEFEERL 123 (693)
Q Consensus 48 ~~~~~~l~~~l~~~~~~~v-Ll~Gp~GtGKT~la~~la~~l~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l 123 (693)
...++.+.+.+.....+|+ ||+|+.|.||+++++.+++.+.+... ........+..++... . ......+
T Consensus 2 ~~~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g----~---~i~vd~I 74 (299)
T PRK07132 2 NNWIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD----K---DLSKSEF 74 (299)
T ss_pred chHHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC----C---cCCHHHH
Confidence 4567788888887767776 59999999999999999999865321 1000011223332101 1 0112345
Q ss_pred HHHHHHHH-----hCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC--CCcEEEEEechHHHHhhhhcCHHHhccC
Q 005511 124 KKLMEEIK-----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--GELQCIGATTLDEYRKHIEKDPALERRF 196 (693)
Q Consensus 124 ~~~~~~~~-----~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~~t~~~~~~~~~~l~~~l~~Rf 196 (693)
+.+...+. .+...|++||+++.+. ..+.+.|++.++. ..+.+|.+|+.+. .+-+++++|+
T Consensus 75 r~l~~~~~~~~~~~~~~KvvII~~~e~m~--------~~a~NaLLK~LEEPp~~t~~il~~~~~~-----kll~TI~SRc 141 (299)
T PRK07132 75 LSAINKLYFSSFVQSQKKILIIKNIEKTS--------NSLLNALLKTIEEPPKDTYFLLTTKNIN-----KVLPTIVSRC 141 (299)
T ss_pred HHHHHHhccCCcccCCceEEEEecccccC--------HHHHHHHHHHhhCCCCCeEEEEEeCChH-----hChHHHHhCe
Confidence 55555542 1366799999999984 3478889999984 3466777776554 6788999999
Q ss_pred CccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhh
Q 005511 197 QPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQ 242 (693)
Q Consensus 197 ~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 242 (693)
..++|++++.++..+.+... .++++....++.++.+
T Consensus 142 ~~~~f~~l~~~~l~~~l~~~----------~~~~~~a~~~a~~~~~ 177 (299)
T PRK07132 142 QVFNVKEPDQQKILAKLLSK----------NKEKEYNWFYAYIFSN 177 (299)
T ss_pred EEEECCCCCHHHHHHHHHHc----------CCChhHHHHHHHHcCC
Confidence 99999999999887776521 2455555555555543
No 449
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.70 E-value=2.2e-07 Score=93.32 Aligned_cols=146 Identities=18% Similarity=0.200 Sum_probs=100.2
Q ss_pred CCHHHHHHHHHHHhcCCCCCe-EEECCCCChHHHHHHHHHHHHhcCCCCC--------------CCCCceEEEEeccccc
Q 005511 46 GRQPQIERVVQILGRRTKNNP-CLIGEPGVGKTAIAEGLAQRIASGDVPD--------------TIEGKKVITLDMGLLV 110 (693)
Q Consensus 46 G~~~~~~~l~~~l~~~~~~~v-Ll~Gp~GtGKT~la~~la~~l~~~~~~~--------------~~~~~~~~~~~~~~l~ 110 (693)
+++.+++.+...+......|. ||+|| +||+++|+.+|+.+.+..... ...+..++.+....
T Consensus 6 ~q~~~~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~-- 81 (290)
T PRK07276 6 KQPKVFQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQG-- 81 (290)
T ss_pred HHHHHHHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCC--
Confidence 456788888888887776655 78996 689999999999998743210 11223344443211
Q ss_pred cCCcccchHHHHHHHHHHHHH----hCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCC--CcEEEEEechHHHHh
Q 005511 111 AGTKYRGEFEERLKKLMEEIK----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG--ELQCIGATTLDEYRK 184 (693)
Q Consensus 111 ~~~~~~g~~~~~l~~~~~~~~----~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~--~v~vI~~t~~~~~~~ 184 (693)
..-..+.++.+...+. .+...|++||++|.|.. .+.|.|++.+|.. ..++|.+|+.++
T Consensus 82 -----~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~--------~AaNaLLKtLEEPp~~t~~iL~t~~~~--- 145 (290)
T PRK07276 82 -----QVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHV--------NAANSLLKVIEEPQSEIYIFLLTNDEN--- 145 (290)
T ss_pred -----CcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCH--------HHHHHHHHHhcCCCCCeEEEEEECChh---
Confidence 0112345666555553 24457999999999954 4789999999853 377788787776
Q ss_pred hhhcCHHHhccCCccccCCCCHHHHHHHHH
Q 005511 185 HIEKDPALERRFQPVKVPEPSVDETIQILK 214 (693)
Q Consensus 185 ~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~ 214 (693)
.+-|.++||+..+.|+. +.++..+++.
T Consensus 146 --~lLpTI~SRcq~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 146 --KVLPTIKSRTQIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred --hCchHHHHcceeeeCCC-cHHHHHHHHH
Confidence 68999999999999976 5666555554
No 450
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.69 E-value=9.1e-08 Score=96.24 Aligned_cols=199 Identities=15% Similarity=0.279 Sum_probs=114.4
Q ss_pred EEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCCcCcCccchhhHHHHcCCCEEEEEccC
Q 005511 408 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEI 487 (693)
Q Consensus 408 ~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEi 487 (693)
++||+||+|||||++++.+-+.+.....-...++++.......+..++-.. .-... +..... ......|+|||++
T Consensus 35 pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~---l~k~~-~~~~gP-~~~k~lv~fiDDl 109 (272)
T PF12775_consen 35 PVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESK---LEKRR-GRVYGP-PGGKKLVLFIDDL 109 (272)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTT---ECECT-TEEEEE-ESSSEEEEEEETT
T ss_pred cEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhc---EEcCC-CCCCCC-CCCcEEEEEeccc
Confidence 699999999999999988665543322234456777665554444443221 10000 000000 1123469999999
Q ss_pred cccCHH------HHHHHHHHhhcceeeCCCC-CeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHH
Q 005511 488 EKAHPD------VFNMMLQILEDGRLTDSKG-RTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLV 560 (693)
Q Consensus 488 d~l~~~------~~~~Ll~~le~~~~~~~~~-~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~ 560 (693)
+...++ ..+.|.++|+.|-+.+... .-....++.+|+++|++...
T Consensus 110 N~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr---------------------------- 161 (272)
T PF12775_consen 110 NMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGR---------------------------- 161 (272)
T ss_dssp T-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT-----------------------------
T ss_pred CCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCC----------------------------
Confidence 887443 6788889999877776543 34566799999998864320
Q ss_pred HHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHHHHHHHHHHhcC----CCeEEeCH---HHHHHHHHhc------c
Q 005511 561 TEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTK----DIELQVTE---RFRERVVEEG------Y 627 (693)
Q Consensus 561 ~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l~~~~~~~~~~----~~~l~~~~---~~~~~l~~~~------~ 627 (693)
..+++-|+++| .++.+++++.+.+..|....+....+...-. +..-.+-. ++.+.+...- .
T Consensus 162 -----~~is~R~~r~f-~i~~~~~p~~~sl~~If~~il~~~l~~~~f~~~v~~~~~~lv~ati~ly~~i~~~~~ptp~k~ 235 (272)
T PF12775_consen 162 -----NPISPRFLRHF-NILNIPYPSDESLNTIFSSILQSHLKNGGFPEDVQKLADKLVQATIELYQKIRQQFLPTPSKP 235 (272)
T ss_dssp ------SHHHHHHTTE-EEEE----TCCHHHHHHHHHHHHHTCHTTSSGGGCCCHHHHHHHHHHHHHHHHHHS-TTTTCT
T ss_pred -----CCCChHHhhhe-EEEEecCCChHHHHHHHHHHHhhhcccCCCChHHHHHHHHHHHHHHHHHHhhhcccCCCCccc
Confidence 01678889999 8999999999999999998887654321100 11001111 2222333220 1
Q ss_pred CCCCCcchHHHHHHHHHH
Q 005511 628 NPSYGARPLRRAIMRLLE 645 (693)
Q Consensus 628 ~~~~g~r~l~~~i~~~i~ 645 (693)
.-.++.|+|.++++.++.
T Consensus 236 HY~FnlRDlsrv~qGil~ 253 (272)
T PF12775_consen 236 HYTFNLRDLSRVFQGILL 253 (272)
T ss_dssp TTTSHHHHHHHHHHHHHH
T ss_pred eeeccHHHHHHHHHHHHh
Confidence 223678999998887654
No 451
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.69 E-value=5.1e-07 Score=108.28 Aligned_cols=135 Identities=21% Similarity=0.271 Sum_probs=92.0
Q ss_pred CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEecc------cccc--CCcccchHHHHHHHHHHHHHh
Q 005511 61 RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMG------LLVA--GTKYRGEFEERLKKLMEEIKQ 132 (693)
Q Consensus 61 ~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~------~l~~--~~~~~g~~~~~l~~~~~~~~~ 132 (693)
...-++||.||.|+|||.++..+|++. +.+++.++-. .+.. .....|.+.++-..++..+++
T Consensus 438 ~~~~pillqG~tssGKtsii~~la~~~----------g~~~vrinnhehtd~qeyig~y~~~~~g~l~freg~LV~Alr~ 507 (1856)
T KOG1808|consen 438 SGKFPILLQGPTSSGKTSIIKELARAT----------GKNIVRINNHEHTDLQEYIGTYVADDNGDLVFREGVLVQALRN 507 (1856)
T ss_pred cCCCCeEEecCcCcCchhHHHHHHHHh----------ccCceehhccccchHHHHHHhhhcCCCCCeeeehhHHHHHHHh
Confidence 344589999999999999999999998 5555555432 2221 123345566666667777776
Q ss_pred CCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCC----------------CcEEEEEechHH-HHhhhhcCHHHhcc
Q 005511 133 SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG----------------ELQCIGATTLDE-YRKHIEKDPALERR 195 (693)
Q Consensus 133 ~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~----------------~v~vI~~t~~~~-~~~~~~l~~~l~~R 195 (693)
+. ++|+||++... .+++++|+++++.. .+.+.++-|++. +.+...+..++++|
T Consensus 508 G~--~~vlD~lnla~--------~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y~grk~lsRa~~~r 577 (1856)
T KOG1808|consen 508 GD--WIVLDELNLAP--------HDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTYGGRKILSRALRNR 577 (1856)
T ss_pred CC--EEEeccccccc--------hHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCccccchhhhhhhccccc
Confidence 54 99999999763 44788888888642 233444444432 33444567788888
Q ss_pred CCccccCCCCHHHHHHHHHH
Q 005511 196 FQPVKVPEPSVDETIQILKG 215 (693)
Q Consensus 196 f~~i~~~~p~~~e~~~il~~ 215 (693)
|..++|.....++...|+..
T Consensus 578 f~e~~f~~~~e~e~~~i~~~ 597 (1856)
T KOG1808|consen 578 FIELHFDDIGEEELEEILEH 597 (1856)
T ss_pred chhhhhhhcCchhhhhhhcc
Confidence 88888888888887777763
No 452
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=98.69 E-value=2e-06 Score=105.38 Aligned_cols=141 Identities=19% Similarity=0.312 Sum_probs=95.2
Q ss_pred CCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCcccchHHHHHHHHHHHHH-------hCCCe
Q 005511 64 NNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK-------QSDEI 136 (693)
Q Consensus 64 ~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~-------~~~~~ 136 (693)
..++++||+|+|||.++........ ...++-++.+...++. .....+...+..-. .....
T Consensus 128 k~~~~~g~~g~gk~~~~~~~~~~~~---------~~~~~~~~fs~~ts~~----~~q~~~~~~~~k~~~~~~~~~~~~~~ 194 (1395)
T KOG3595|consen 128 KPVLLVGPTGTGKTVLVLSELRSLQ---------DREVYLLNFSSVTSSE----LLQEIIESKLDKRRSGNYGPPLGKKL 194 (1395)
T ss_pred CeEEEEcCCCCCeeeehHHHHHhcc---------cchheEEeeeeeccHH----HHHHHHHHHHHHhcccCCCCCCCcee
Confidence 8899999999999999888776652 2222224433332211 01111111111111 11235
Q ss_pred EEEEeccchhhhCCCCCChHhHHHHHhhhhcCC--------------CcEEEEEechHHHHhhhhcCHHHhccCCccccC
Q 005511 137 ILFIDEVHTLIGAGAAEGAIDAANILKPSLARG--------------ELQCIGATTLDEYRKHIEKDPALERRFQPVKVP 202 (693)
Q Consensus 137 vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~--------------~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~ 202 (693)
++|+||++. |..+..+......++++.++.+ .+.+++++++ +..++.++.+.+.+.|..+.++
T Consensus 195 ~~f~ddinm--p~~~~yg~q~~~~~lrq~~e~~g~~~~~~~~~~~i~~i~~~~a~~~-~~~gr~~i~~r~~r~f~~~~~~ 271 (1395)
T KOG3595|consen 195 VLFVDDINM--PALDKYGDQPPIELLRQMLEHGGFYDRKKSEWVEIENVQLVGAMNP-PGGGRNDITERFLRHFLIVSLN 271 (1395)
T ss_pred EEEEeccCC--chhhhcCCccHHHHHHHHHHhceeecccccceeEEeeeEEEeecCC-CCCccCcccHHHHHHeeeEeeC
Confidence 899999994 4555666777788888888632 2778999998 5556677899999999999999
Q ss_pred CCCHHHHHHHHHHHHHhH
Q 005511 203 EPSVDETIQILKGLRERY 220 (693)
Q Consensus 203 ~p~~~e~~~il~~~~~~~ 220 (693)
.|+.+...+|...+....
T Consensus 272 ~~~~~sl~~if~~~~~~~ 289 (1395)
T KOG3595|consen 272 YPSQESLTQIFNTILTGH 289 (1395)
T ss_pred CCChhhHHHHHHHHHhcc
Confidence 999999999999887653
No 453
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.66 E-value=1.6e-07 Score=84.00 Aligned_cols=109 Identities=20% Similarity=0.281 Sum_probs=69.8
Q ss_pred CCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEecccccc--------------CCcccchHHHHHHHHH
Q 005511 62 TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVA--------------GTKYRGEFEERLKKLM 127 (693)
Q Consensus 62 ~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~--------------~~~~~g~~~~~l~~~~ 127 (693)
....++++||||+|||++++.+++.+....... ...+++.+++..... ..............+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIK--NHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHC--CCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhcc--CCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHH
Confidence 456789999999999999999999885310000 045677777543221 0111123344445555
Q ss_pred HHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCCcEEEEEech
Q 005511 128 EEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTL 179 (693)
Q Consensus 128 ~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~t~~ 179 (693)
..+.+....+|+|||+|.+. .....+.|+.+.+...+.+|.++++
T Consensus 81 ~~l~~~~~~~lviDe~~~l~-------~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLF-------SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHH-------THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHHHhcCCeEEEEeChHhcC-------CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 55566666799999999985 1557888888888888999988876
No 454
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.66 E-value=3.1e-07 Score=94.57 Aligned_cols=216 Identities=18% Similarity=0.188 Sum_probs=128.9
Q ss_pred hccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCC--Ccceeeeccccccchhh-h
Q 005511 375 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGS--EEAMIRLDMSEFMERHT-V 451 (693)
Q Consensus 375 ~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~--~~~~~~~~~~~~~~~~~-~ 451 (693)
...+.|.+.-+..+..++..+.-... .+++.+.|-||||||.+...+-..+-.. ....+.++|..+..... +
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t-----~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF 223 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNT-----SGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIF 223 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhccc-----CcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHH
Confidence 35678888888888888876643322 2469999999999998887665544222 22347888887654322 1
Q ss_pred hhhcCCC-CCCcCcCcc----chhhHHHHcCC-CEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEe
Q 005511 452 SKLIGSP-PGYVGYTEG----GQLTEAVRRRP-YTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMT 525 (693)
Q Consensus 452 ~~l~g~~-~~~~g~~~~----~~l~~~~~~~~-~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~ 525 (693)
..+++.- .+.++...+ ..+........ .-|+++||+|.+...-+..|+.+++--.+ +.++.++|..
T Consensus 224 ~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~l--------p~sr~iLiGi 295 (529)
T KOG2227|consen 224 KKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKL--------PNSRIILIGI 295 (529)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccC--------Ccceeeeeee
Confidence 1222110 011111111 12222222222 46899999999988888888888876432 3456677777
Q ss_pred cCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhcc---CcEEEcCCCCHHHHHHHHHHHHHHHH
Q 005511 526 SNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRL---DEMIVFRQLTKLEVKEIADIMLKEVF 602 (693)
Q Consensus 526 tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~---~~~v~f~~l~~~~~~~i~~~~l~~~~ 602 (693)
+|.-+ +.+.|-|-|..|+ ...+.|+||+.+++.+|+...+....
T Consensus 296 ANslD---------------------------------lTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~ 342 (529)
T KOG2227|consen 296 ANSLD---------------------------------LTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEES 342 (529)
T ss_pred hhhhh---------------------------------HHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccc
Confidence 76321 2222445666544 34699999999999999988776522
Q ss_pred HHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHHHH
Q 005511 603 DRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLL 644 (693)
Q Consensus 603 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i 644 (693)
...+-+.+++.++.+.-......|.+-.+++..|
T Consensus 343 --------t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 343 --------TSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred --------ccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 2345557888888773333222444444444333
No 455
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.63 E-value=1e-07 Score=94.89 Aligned_cols=115 Identities=26% Similarity=0.364 Sum_probs=70.3
Q ss_pred HHHHHHHHHH-hcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCc---ccchHHHHHH
Q 005511 49 PQIERVVQIL-GRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTK---YRGEFEERLK 124 (693)
Q Consensus 49 ~~~~~l~~~l-~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~~l~ 124 (693)
.++.++.... .-..+.+++|+||||||||+||-++++.+.. .|.+++++...++....+ ..+..+..+
T Consensus 90 ~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~-------~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l- 161 (254)
T COG1484 90 KALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLK-------AGISVLFITAPDLLSKLKAAFDEGRLEEKL- 161 (254)
T ss_pred HHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHH-------cCCeEEEEEHHHHHHHHHHHHhcCchHHHH-
Confidence 4444444333 2247889999999999999999999999964 377889988776653211 012222222
Q ss_pred HHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCCcEEEEEech
Q 005511 125 KLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTL 179 (693)
Q Consensus 125 ~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~t~~ 179 (693)
...+.+.+ +|+|||+...... .........++.+..++... +.++|.
T Consensus 162 --~~~l~~~d--lLIiDDlG~~~~~--~~~~~~~~q~I~~r~~~~~~--~~tsN~ 208 (254)
T COG1484 162 --LRELKKVD--LLIIDDIGYEPFS--QEEADLLFQLISRRYESRSL--IITSNL 208 (254)
T ss_pred --HHHhhcCC--EEEEecccCccCC--HHHHHHHHHHHHHHHhhccc--eeecCC
Confidence 23344444 9999999876321 11223344455555555555 666664
No 456
>PRK06526 transposase; Provisional
Probab=98.62 E-value=5.7e-08 Score=96.58 Aligned_cols=128 Identities=24% Similarity=0.323 Sum_probs=69.6
Q ss_pred CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCcccchHHHHHHHHHHHHHhCCCeEEEE
Q 005511 61 RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFI 140 (693)
Q Consensus 61 ~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~i 140 (693)
..+.|++|+||||||||+++.+++..+.. .|.++.+..+..+...... ......+...+..+.. +.+|+|
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~-------~g~~v~f~t~~~l~~~l~~-~~~~~~~~~~l~~l~~--~dlLII 165 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQ-------AGHRVLFATAAQWVARLAA-AHHAGRLQAELVKLGR--YPLLIV 165 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHH-------CCCchhhhhHHHHHHHHHH-HHhcCcHHHHHHHhcc--CCEEEE
Confidence 45689999999999999999999998754 2556666655544321100 0000112222333332 349999
Q ss_pred eccchhhhCCCCCChHhHHHHHhhhh----cCCCcEEEEEechH--HHHhhhhcCH----HHhccC----CccccCCCCH
Q 005511 141 DEVHTLIGAGAAEGAIDAANILKPSL----ARGELQCIGATTLD--EYRKHIEKDP----ALERRF----QPVKVPEPSV 206 (693)
Q Consensus 141 DEid~l~~~~~~~~~~~~~~~L~~~l----~~~~v~vI~~t~~~--~~~~~~~l~~----~l~~Rf----~~i~~~~p~~ 206 (693)
||++.+... ....+.|..++ ++. .+|.+||.+ .|...+. ++ ++.+|+ ..|.|...+.
T Consensus 166 DD~g~~~~~------~~~~~~L~~li~~r~~~~--s~IitSn~~~~~w~~~~~-d~~~a~ai~dRl~~~~~~i~~~g~s~ 236 (254)
T PRK06526 166 DEVGYIPFE------PEAANLFFQLVSSRYERA--SLIVTSNKPFGRWGEVFG-DDVVAAAMIDRLVHHAEVISLKGDSY 236 (254)
T ss_pred cccccCCCC------HHHHHHHHHHHHHHHhcC--CEEEEcCCCHHHHHHHcC-ChHHHHHHHHHHhcCceEEeecCCCc
Confidence 999976321 12233333333 333 466666653 3333321 22 344555 2466666555
Q ss_pred H
Q 005511 207 D 207 (693)
Q Consensus 207 ~ 207 (693)
.
T Consensus 237 R 237 (254)
T PRK06526 237 R 237 (254)
T ss_pred c
Confidence 4
No 457
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.62 E-value=5e-07 Score=99.90 Aligned_cols=195 Identities=13% Similarity=0.096 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHhcC-CCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEec----cccccCCcccchHHHH
Q 005511 48 QPQIERVVQILGRR-TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDM----GLLVAGTKYRGEFEER 122 (693)
Q Consensus 48 ~~~~~~l~~~l~~~-~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~~ 122 (693)
+..+..|.-..-.+ .-.+|+|.|++|+|||+++++++..+.. ..+++.+.. ..+..+. +.+..
T Consensus 9 ~~~~~Al~l~av~p~~~gGv~i~g~~G~~ks~~~r~l~~llp~--------~~p~r~~p~~~t~~~L~Gg~----Dl~~~ 76 (584)
T PRK13406 9 ADAALAAALLAVDPAGLGGVVLRARAGPVRDRWLAALRALLPA--------GTPLRRLPPGIADDRLLGGL----DLAAT 76 (584)
T ss_pred HHHHHHHHHhCcCccccceEEEEcCCCcHHHHHHHHHHHhcCC--------CCCcccCCCCCcHHHccCCc----hHHhH
Confidence 34444433333333 4578999999999999999999988743 223333322 1222211 11111
Q ss_pred HHH---H--HHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCC---------------cEEEEEechHHH
Q 005511 123 LKK---L--MEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGE---------------LQCIGATTLDEY 182 (693)
Q Consensus 123 l~~---~--~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~---------------v~vI~~t~~~~~ 182 (693)
+.. . -..+....+.|||+||++.+.+ .+++.|++.++.+. +.+|++.+..++
T Consensus 77 l~~g~~~~~pGlla~Ah~GvL~lDe~n~~~~--------~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~ 148 (584)
T PRK13406 77 LRAGRPVAQRGLLAEADGGVLVLAMAERLEP--------GTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEE 148 (584)
T ss_pred hhcCCcCCCCCceeeccCCEEEecCcccCCH--------HHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhc
Confidence 111 0 0122234557999999999854 48999999998653 566776444333
Q ss_pred HhhhhcCHHHhccCC-ccccCCCCHHHHH-------HHHHHHHHhHhhhcCcccChHHHHHHHHhhhhhhcccCCchhhh
Q 005511 183 RKHIEKDPALERRFQ-PVKVPEPSVDETI-------QILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAI 254 (693)
Q Consensus 183 ~~~~~l~~~l~~Rf~-~i~~~~p~~~e~~-------~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 254 (693)
. ..+.++++.||. .+.++.++..+.. +|.... ++ ..++.++++.+..++.++..+- -..++..+
T Consensus 149 ~--~~L~~~lLDRf~l~v~v~~~~~~~~~~~~~~~~~I~~AR-~r---l~~v~v~~~~l~~i~~~~~~~g--v~S~Ra~i 220 (584)
T PRK13406 149 D--ERAPAALADRLAFHLDLDGLALRDAREIPIDADDIAAAR-AR---LPAVGPPPEAIAALCAAAAALG--IASLRAPL 220 (584)
T ss_pred c--cCCCHHhHhheEEEEEcCCCChHHhcccCCCHHHHHHHH-HH---HccCCCCHHHHHHHHHHHHHhC--CCCcCHHH
Confidence 2 358999999998 8999988876432 222211 22 2478889999998888776541 11457778
Q ss_pred hHHHHHhhHHHHhhcC
Q 005511 255 DLIDEAGSRVRLRHAQ 270 (693)
Q Consensus 255 ~ll~~a~~~~~~~~~~ 270 (693)
.+++.|...+.+....
T Consensus 221 ~llraARa~AaL~Gr~ 236 (584)
T PRK13406 221 LALRAARAAAALAGRT 236 (584)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 8888888887776543
No 458
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.62 E-value=2.6e-07 Score=101.87 Aligned_cols=184 Identities=22% Similarity=0.301 Sum_probs=112.3
Q ss_pred CCCccCCHHHHHHHHHHHhc--CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCC-----
Q 005511 41 LDPVVGRQPQIERVVQILGR--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGT----- 113 (693)
Q Consensus 41 ~~~iiG~~~~~~~l~~~l~~--~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~----- 113 (693)
...++|..+....+...+.. ....++++.|++||||+++|+++.+.... .+.+++.++|..+....
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~-------~~~~~~~~~c~~~~~~~~~~~l 205 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPR-------ANGPFIALNMAAIPKDLIESEL 205 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCC-------CCCCeEEEeCCCCCHHHHHHHh
Confidence 34688988877776665543 44568899999999999999999876532 25678999987653100
Q ss_pred --cccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCC-------------CcEEEEEec
Q 005511 114 --KYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG-------------ELQCIGATT 178 (693)
Q Consensus 114 --~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~vI~~t~ 178 (693)
...+.+...............++.|||||++.|.. +.+..|..+++.+ .+.+|++|+
T Consensus 206 fg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~--------~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~ 277 (463)
T TIGR01818 206 FGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPL--------DAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATH 277 (463)
T ss_pred cCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCH--------HHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCC
Confidence 00000000000001112234467899999999943 3677777777643 357888887
Q ss_pred hHHHH--hhhhcCHHHhccCC--ccccCCCC--HHHHHHHHHHHHHhHhhhcC---cccChHHHHHHHHh
Q 005511 179 LDEYR--KHIEKDPALERRFQ--PVKVPEPS--VDETIQILKGLRERYEIHHK---LRYTDEALVSAAQL 239 (693)
Q Consensus 179 ~~~~~--~~~~l~~~l~~Rf~--~i~~~~p~--~~e~~~il~~~~~~~~~~~~---~~~~~~~l~~l~~~ 239 (693)
..... ..-.+.+.+..|+. .|.+|++. .++...+++.++.++....+ ..++++++..+...
T Consensus 278 ~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 347 (463)
T TIGR01818 278 QNLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQL 347 (463)
T ss_pred CCHHHHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC
Confidence 54211 11123457777886 56666666 45666777766665543332 35778877776654
No 459
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.61 E-value=2.6e-08 Score=93.58 Aligned_cols=115 Identities=23% Similarity=0.297 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccC---CcccchHHHHHHH
Q 005511 49 PQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAG---TKYRGEFEERLKK 125 (693)
Q Consensus 49 ~~~~~l~~~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~~l~~ 125 (693)
..+.++...-......|++|+||||||||+||.++++.+.. .+.++.+++...+... ....+. ...
T Consensus 33 ~~~~~l~~~~~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~-------~g~~v~f~~~~~L~~~l~~~~~~~~----~~~ 101 (178)
T PF01695_consen 33 AQIAQLAALEFIENGENLILYGPPGTGKTHLAVAIANEAIR-------KGYSVLFITASDLLDELKQSRSDGS----YEE 101 (178)
T ss_dssp -HHHHHHHH-S-SC--EEEEEESTTSSHHHHHHHHHHHHHH-------TT--EEEEEHHHHHHHHHCCHCCTT----HCH
T ss_pred HHHHHHhcCCCcccCeEEEEEhhHhHHHHHHHHHHHHHhcc-------CCcceeEeecCceeccccccccccc----hhh
Confidence 44555544433456789999999999999999999998865 3777888887766432 111122 223
Q ss_pred HHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCCcEEEEEechH
Q 005511 126 LMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLD 180 (693)
Q Consensus 126 ~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~t~~~ 180 (693)
.+..+...+ +|+|||+...... ........+++..-.++ -..|.+||..
T Consensus 102 ~~~~l~~~d--lLilDDlG~~~~~--~~~~~~l~~ii~~R~~~--~~tIiTSN~~ 150 (178)
T PF01695_consen 102 LLKRLKRVD--LLILDDLGYEPLS--EWEAELLFEIIDERYER--KPTIITSNLS 150 (178)
T ss_dssp HHHHHHTSS--CEEEETCTSS-----HHHHHCTHHHHHHHHHT---EEEEEESS-
T ss_pred hcCcccccc--Eecccccceeeec--ccccccchhhhhHhhcc--cCeEeeCCCc
Confidence 445555555 9999999754211 11111123333333333 2567788864
No 460
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.61 E-value=4.4e-07 Score=99.92 Aligned_cols=176 Identities=15% Similarity=0.194 Sum_probs=106.5
Q ss_pred CCCCccCCHHHHHHHHHHHhc--CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCcccc
Q 005511 40 KLDPVVGRQPQIERVVQILGR--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRG 117 (693)
Q Consensus 40 ~~~~iiG~~~~~~~l~~~l~~--~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 117 (693)
.+..++|....+..+.+.+.. ....+++++|++||||+++|+++...... .+.+++.++|..+...
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~-------~~~~~~~i~c~~~~~~----- 208 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRR-------AKGPFIKVNCAALPES----- 208 (457)
T ss_pred cccceecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCCC-------CCCCeEEEECCCCCHH-----
Confidence 345688888777776665433 44578999999999999999999875432 2567899998765310
Q ss_pred hHHHHHHHHHH---------------HHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCC-------------
Q 005511 118 EFEERLKKLME---------------EIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG------------- 169 (693)
Q Consensus 118 ~~~~~l~~~~~---------------~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~------------- 169 (693)
.. -..+|. ......+++|||||++.|.+ ..+..|...++.+
T Consensus 209 ~~---~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~--------~~q~~L~~~l~~~~~~~~~~~~~~~~ 277 (457)
T PRK11361 209 LL---ESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPL--------VLQAKLLRILQEREFERIGGHQTIKV 277 (457)
T ss_pred HH---HHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhCCH--------HHHHHHHHHHhcCcEEeCCCCceeee
Confidence 00 011111 12234456999999999954 3677777777543
Q ss_pred CcEEEEEechHHHH--hhhhcCHHHhccCCccccCCCCHHHHHH----HHHHHHHhHhhhcC---cccChHHHHHHHH
Q 005511 170 ELQCIGATTLDEYR--KHIEKDPALERRFQPVKVPEPSVDETIQ----ILKGLRERYEIHHK---LRYTDEALVSAAQ 238 (693)
Q Consensus 170 ~v~vI~~t~~~~~~--~~~~l~~~l~~Rf~~i~~~~p~~~e~~~----il~~~~~~~~~~~~---~~~~~~~l~~l~~ 238 (693)
.+.+|++|+..... ..-.+.+.+..|+..+.+..|+..+|.+ +...++.++....+ ..++++++..+..
T Consensus 278 ~~rii~~t~~~l~~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 355 (457)
T PRK11361 278 DIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTA 355 (457)
T ss_pred ceEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHc
Confidence 26888888764211 0012455666677656666666555544 44444444322211 3456666555543
No 461
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.61 E-value=4.9e-07 Score=99.90 Aligned_cols=157 Identities=17% Similarity=0.208 Sum_probs=99.4
Q ss_pred CCCCccCCHHHHHHHHHHHhcCC------------CCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEecc
Q 005511 40 KLDPVVGRQPQIERVVQILGRRT------------KNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMG 107 (693)
Q Consensus 40 ~~~~iiG~~~~~~~l~~~l~~~~------------~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 107 (693)
-...+.|++.+++.+.-.|.... --|+||.|.||||||.|.+.+++.++.+ ++.+..
T Consensus 284 iaPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~-----------vytsgk 352 (682)
T COG1241 284 IAPSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRG-----------VYTSGK 352 (682)
T ss_pred hcccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCce-----------EEEccc
Confidence 35579999999988766654321 1489999999999999999999877432 122111
Q ss_pred -----ccccC---CcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCC---------
Q 005511 108 -----LLVAG---TKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGE--------- 170 (693)
Q Consensus 108 -----~l~~~---~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~--------- 170 (693)
.+.+. .+..| ++.+.. +.+...+++|.+|||+|.|... ...++...|+...
T Consensus 353 gss~~GLTAav~rd~~tg--e~~Lea--GALVlAD~Gv~cIDEfdKm~~~--------dr~aihEaMEQQtIsIaKAGI~ 420 (682)
T COG1241 353 GSSAAGLTAAVVRDKVTG--EWVLEA--GALVLADGGVCCIDEFDKMNEE--------DRVAIHEAMEQQTISIAKAGIT 420 (682)
T ss_pred cccccCceeEEEEccCCC--eEEEeC--CEEEEecCCEEEEEeccCCChH--------HHHHHHHHHHhcEeeeccccee
Confidence 11100 00011 111111 1222345779999999998433 4566666666432
Q ss_pred ------cEEEEEechHH--------HHhhhhcCHHHhccCC--ccccCCCCHHHHHHHHHHHHHh
Q 005511 171 ------LQCIGATTLDE--------YRKHIEKDPALERRFQ--PVKVPEPSVDETIQILKGLRER 219 (693)
Q Consensus 171 ------v~vI~~t~~~~--------~~~~~~l~~~l~~Rf~--~i~~~~p~~~e~~~il~~~~~~ 219 (693)
..|++|+|+.- ....+.++++|++||+ .+..+.|+.+.-..+.++++..
T Consensus 421 atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~ 485 (682)
T COG1241 421 ATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDK 485 (682)
T ss_pred eecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHH
Confidence 34677777653 1234578899999998 5677888887666777776654
No 462
>PF13173 AAA_14: AAA domain
Probab=98.61 E-value=1.8e-07 Score=83.26 Aligned_cols=121 Identities=23% Similarity=0.329 Sum_probs=79.8
Q ss_pred EEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCCcCcCccchhhHHHHc---CCCEEEEE
Q 005511 408 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRR---RPYTVVLF 484 (693)
Q Consensus 408 ~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~---~~~~vl~i 484 (693)
.++++||.|||||++++.+++.+. ...+++.+++.+........ .. +.+.+.+ ....+|||
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~~~~~~~--------------~~-~~~~~~~~~~~~~~~i~i 67 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPRDRRLAD--------------PD-LLEYFLELIKPGKKYIFI 67 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHHHHHHhh--------------hh-hHHHHHHhhccCCcEEEE
Confidence 489999999999999999998874 34677888887654321100 00 1111211 24679999
Q ss_pred ccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHH
Q 005511 485 DEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEEL 564 (693)
Q Consensus 485 DEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l 564 (693)
||++.++ +....+..+.+++ .+..+|+|+......
T Consensus 68 DEiq~~~-~~~~~lk~l~d~~------------~~~~ii~tgS~~~~l-------------------------------- 102 (128)
T PF13173_consen 68 DEIQYLP-DWEDALKFLVDNG------------PNIKIILTGSSSSLL-------------------------------- 102 (128)
T ss_pred ehhhhhc-cHHHHHHHHHHhc------------cCceEEEEccchHHH--------------------------------
Confidence 9999996 6777777777763 244577766532211
Q ss_pred hhcCchhHhhccCcEEEcCCCCHHHH
Q 005511 565 KQYFRPEFLNRLDEMIVFRQLTKLEV 590 (693)
Q Consensus 565 ~~~~~~~l~~R~~~~v~f~~l~~~~~ 590 (693)
.......|.+|. ..+.+.|++..|+
T Consensus 103 ~~~~~~~l~gr~-~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 103 SKDIAESLAGRV-IEIELYPLSFREF 127 (128)
T ss_pred hhcccccCCCeE-EEEEECCCCHHHh
Confidence 011446778888 6889999998874
No 463
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=98.61 E-value=6e-07 Score=85.53 Aligned_cols=135 Identities=17% Similarity=0.214 Sum_probs=94.8
Q ss_pred eEEEEeccCC-CcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCC------CCCcCcCccchhhHHHHc---
Q 005511 407 ASFIFSGPTG-VGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSP------PGYVGYTEGGQLTEAVRR--- 476 (693)
Q Consensus 407 ~~iLl~Gp~G-tGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~------~~~~g~~~~~~l~~~~~~--- 476 (693)
+.+||.|..+ +||..++..+++.+++.+ ++.....+-. ++.+. ...++..+.+.+.+.+..
T Consensus 16 hAYLfeG~n~~~~~~~~~~f~~~~l~~~~-----i~~~~HPD~~----~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~ 86 (263)
T PRK06581 16 NSWLIEAENIEQALKDLEKFIYIKLFKNS-----IPLENNPDYH----FIARETSATSNAKNISIEQIRKLQDFLSKTSA 86 (263)
T ss_pred heeeEeCCChhhHHHHHHHHHHHHHhccC-----cccCCCCCEE----EEeccccccccCCcccHHHHHHHHHHHhhCcc
Confidence 4699999998 999999999999985532 1221111100 11111 113344344555555543
Q ss_pred -CCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHH
Q 005511 477 -RPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNR 555 (693)
Q Consensus 477 -~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~ 555 (693)
+...|++|+++|+++....|+||+.+|+ +..+++||+.|+....
T Consensus 87 ~g~~KViII~~ae~mt~~AANALLKtLEE-----------PP~~t~fILit~~~~~------------------------ 131 (263)
T PRK06581 87 ISGYKVAIIYSAELMNLNAANSCLKILED-----------APKNSYIFLITSRAAS------------------------ 131 (263)
T ss_pred cCCcEEEEEechHHhCHHHHHHHHHhhcC-----------CCCCeEEEEEeCChhh------------------------
Confidence 3457999999999999999999999999 5678888887765443
Q ss_pred HHHHHHHHHhhcCchhHhhccCcEEEcCCCCHHHHHHHHHHHH
Q 005511 556 IKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIML 598 (693)
Q Consensus 556 l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~l 598 (693)
+.|.+++|| +.+.|..+......+.....+
T Consensus 132 ------------LLpTIrSRC-q~i~~~~p~~~~~~e~~~~~~ 161 (263)
T PRK06581 132 ------------IISTIRSRC-FKINVRSSILHAYNELYSQFI 161 (263)
T ss_pred ------------CchhHhhce-EEEeCCCCCHHHHHHHHHHhc
Confidence 778999999 999999988877666665443
No 464
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.59 E-value=8.5e-08 Score=98.00 Aligned_cols=128 Identities=17% Similarity=0.259 Sum_probs=73.3
Q ss_pred cCCCCCccCCH----HHHHHHHHHHhc----CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEecccc
Q 005511 38 EGKLDPVVGRQ----PQIERVVQILGR----RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLL 109 (693)
Q Consensus 38 ~~~~~~iiG~~----~~~~~l~~~l~~----~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l 109 (693)
..+|+++...+ ........++.. ....+++|+||+|||||+|+.++|+.+.. .|.++.++....+
T Consensus 123 ~atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~-------~g~~v~~~~~~~l 195 (306)
T PRK08939 123 QASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAK-------KGVSSTLLHFPEF 195 (306)
T ss_pred cCcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHH-------cCCCEEEEEHHHH
Confidence 45666665332 333333334332 24578999999999999999999999964 3666777776655
Q ss_pred ccCCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhc---CCCcEEEEEechH
Q 005511 110 VAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA---RGELQCIGATTLD 180 (693)
Q Consensus 110 ~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~---~~~v~vI~~t~~~ 180 (693)
...... ......+...+..+.+.+ +|+|||+.....+ .+. ...+|..+++ .....+|.+||-+
T Consensus 196 ~~~lk~-~~~~~~~~~~l~~l~~~d--lLiIDDiG~e~~s---~~~--~~~ll~~Il~~R~~~~~~ti~TSNl~ 261 (306)
T PRK08939 196 IRELKN-SISDGSVKEKIDAVKEAP--VLMLDDIGAEQMS---SWV--RDEVLGVILQYRMQEELPTFFTSNFD 261 (306)
T ss_pred HHHHHH-HHhcCcHHHHHHHhcCCC--EEEEecCCCcccc---HHH--HHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 321110 000011334455555555 9999999865321 111 1123333332 2456778888853
No 465
>PRK15115 response regulator GlrR; Provisional
Probab=98.59 E-value=5.8e-07 Score=98.55 Aligned_cols=174 Identities=20% Similarity=0.264 Sum_probs=106.9
Q ss_pred CccCCHHHHHHHHHHHhc--CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCcccchHH
Q 005511 43 PVVGRQPQIERVVQILGR--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFE 120 (693)
Q Consensus 43 ~iiG~~~~~~~l~~~l~~--~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 120 (693)
.++|....+.++.+.... ....+++++|++|||||++|+.+.+.... .+.+++.++|..+... ..
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r-------~~~~f~~i~c~~~~~~-----~~- 201 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPR-------ASKPFIAINCGALPEQ-----LL- 201 (444)
T ss_pred cccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhcCC-------CCCCeEEEeCCCCCHH-----HH-
Confidence 578888777776654332 44568999999999999999999886532 2567899998765310 00
Q ss_pred HHHHHHHH---------------HHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCC-------------CcE
Q 005511 121 ERLKKLME---------------EIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARG-------------ELQ 172 (693)
Q Consensus 121 ~~l~~~~~---------------~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~ 172 (693)
-..+|. ......++.|||||++.|.. +.+..|...++.+ .+.
T Consensus 202 --~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~--------~~q~~L~~~l~~~~~~~~g~~~~~~~~~r 271 (444)
T PRK15115 202 --ESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPA--------PLQVKLLRVLQERKVRPLGSNRDIDIDVR 271 (444)
T ss_pred --HHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccCCH--------HHHHHHHHHHhhCCEEeCCCCceeeeeEE
Confidence 111221 11233456899999999954 3677777777643 357
Q ss_pred EEEEechHHHH--hhhhcCHHHhccCCccccCCCCHHHHHH----HHHHHHHhHhhhcC---cccChHHHHHHHHh
Q 005511 173 CIGATTLDEYR--KHIEKDPALERRFQPVKVPEPSVDETIQ----ILKGLRERYEIHHK---LRYTDEALVSAAQL 239 (693)
Q Consensus 173 vI~~t~~~~~~--~~~~l~~~l~~Rf~~i~~~~p~~~e~~~----il~~~~~~~~~~~~---~~~~~~~l~~l~~~ 239 (693)
+|++|+..... ..-.+.+.+..|+..+.+..|+..+|.+ +++.++.++....+ ..++++++..+...
T Consensus 272 ii~~~~~~l~~~~~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 347 (444)
T PRK15115 272 IISATHRDLPKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTA 347 (444)
T ss_pred EEEeCCCCHHHHHHcCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC
Confidence 88888754211 0012345666677766666666665544 44455544322222 24677777776654
No 466
>PRK06921 hypothetical protein; Provisional
Probab=98.59 E-value=2.8e-07 Score=92.50 Aligned_cols=122 Identities=24% Similarity=0.357 Sum_probs=66.6
Q ss_pred CCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCcccchHHHHHHHHHHHHHhCCCeEEEEe
Q 005511 62 TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFID 141 (693)
Q Consensus 62 ~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iD 141 (693)
...+++|+||||+|||+|+.++++.+... .+..++++....+..... ... ......+..+...+ +|+||
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~------~g~~v~y~~~~~l~~~l~--~~~-~~~~~~~~~~~~~d--lLiID 184 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRK------KGVPVLYFPFVEGFGDLK--DDF-DLLEAKLNRMKKVE--VLFID 184 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhh------cCceEEEEEHHHHHHHHH--HHH-HHHHHHHHHhcCCC--EEEEe
Confidence 46789999999999999999999998541 156778887655432110 001 11223334444444 99999
Q ss_pred ccch-hhhCC-CCCCh-HhHHHHHhhhhcCCCcEEEEEechHHHHhhhhcCHHHhccC
Q 005511 142 EVHT-LIGAG-AAEGA-IDAANILKPSLARGELQCIGATTLDEYRKHIEKDPALERRF 196 (693)
Q Consensus 142 Eid~-l~~~~-~~~~~-~~~~~~L~~~l~~~~v~vI~~t~~~~~~~~~~l~~~l~~Rf 196 (693)
|++. +.+.. ..... ..+..++.....++. .+|.+||.+.- ....+++.+.+|+
T Consensus 185 Dl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k-~tIitsn~~~~-el~~~~~~l~sRi 240 (266)
T PRK06921 185 DLFKPVNGKPRATEWQIEQMYSVLNYRYLNHK-PILISSELTID-ELLDIDEALGSRI 240 (266)
T ss_pred ccccccCCCccCCHHHHHHHHHHHHHHHHCCC-CEEEECCCCHH-HHhhhhhHHHHHH
Confidence 9954 11111 11111 223444444444433 45667765331 1112355666553
No 467
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.58 E-value=2.7e-07 Score=95.01 Aligned_cols=128 Identities=22% Similarity=0.309 Sum_probs=77.0
Q ss_pred CCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCc---ccchHHHHHHHHHHHHHhCCCeEE
Q 005511 62 TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTK---YRGEFEERLKKLMEEIKQSDEIIL 138 (693)
Q Consensus 62 ~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~~l~~~~~~~~~~~~~vL 138 (693)
...+++|+||+|||||+|+.++|+.+.. .+..+++++...+..... +... ......+..+..++ +|
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~-------~g~~V~y~t~~~l~~~l~~~~~~~~--~~~~~~~~~l~~~D--LL 250 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLD-------RGKSVIYRTADELIEILREIRFNND--KELEEVYDLLINCD--LL 250 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHH-------CCCeEEEEEHHHHHHHHHHHHhccc--hhHHHHHHHhccCC--EE
Confidence 3489999999999999999999999865 367888888766543110 0000 01111245555555 99
Q ss_pred EEeccchhhhCCCCCChHhHHHHHhhhhcCCCcEEEEEech--HHHHhhhhcCHHHhccCC----ccccCCCC
Q 005511 139 FIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTL--DEYRKHIEKDPALERRFQ----PVKVPEPS 205 (693)
Q Consensus 139 ~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~t~~--~~~~~~~~l~~~l~~Rf~----~i~~~~p~ 205 (693)
+|||+...... ......+.+++......+ ..+|.+||. .++.. .+++++.+|+. .+.|.-.+
T Consensus 251 IIDDlG~e~~t--~~~~~~Lf~iin~R~~~~-k~tIiTSNl~~~el~~--~~~eri~SRL~~~~~~i~~~G~d 318 (329)
T PRK06835 251 IIDDLGTEKIT--EFSKSELFNLINKRLLRQ-KKMIISTNLSLEELLK--TYSERISSRLLGNFTLLKFYGED 318 (329)
T ss_pred EEeccCCCCCC--HHHHHHHHHHHHHHHHCC-CCEEEECCCCHHHHHH--HHhHHHHHHHHcCCEEEEecCcC
Confidence 99999876321 112233445555555444 356666664 33322 24678888873 35554433
No 468
>PRK08181 transposase; Validated
Probab=98.57 E-value=2e-07 Score=93.12 Aligned_cols=105 Identities=12% Similarity=0.224 Sum_probs=69.4
Q ss_pred EEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCCcCcCccchhhHHHHcCCCEEEEEccC
Q 005511 408 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEI 487 (693)
Q Consensus 408 ~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEi 487 (693)
+++|+||||||||.+|.++++.+...+..++.+.+.++....... +. ......+...+.+. .+|+|||+
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a--------~~-~~~~~~~l~~l~~~--dLLIIDDl 176 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVA--------RR-ELQLESAIAKLDKF--DLLILDDL 176 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHH--------Hh-CCcHHHHHHHHhcC--CEEEEecc
Confidence 699999999999999999999886667777777776665432111 00 00011223333333 49999999
Q ss_pred cccC--HHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhh
Q 005511 488 EKAH--PDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIE 534 (693)
Q Consensus 488 d~l~--~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~ 534 (693)
...+ +..++.|.++++... .+.-+|+|||.+...+.
T Consensus 177 g~~~~~~~~~~~Lf~lin~R~-----------~~~s~IiTSN~~~~~w~ 214 (269)
T PRK08181 177 AYVTKDQAETSVLFELISARY-----------ERRSILITANQPFGEWN 214 (269)
T ss_pred ccccCCHHHHHHHHHHHHHHH-----------hCCCEEEEcCCCHHHHH
Confidence 8774 455678888887521 12248899998776543
No 469
>PRK06526 transposase; Provisional
Probab=98.56 E-value=7.8e-08 Score=95.62 Aligned_cols=103 Identities=22% Similarity=0.414 Sum_probs=67.0
Q ss_pred EEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCCcCcCccchhhHHHHc-CCCEEEEEcc
Q 005511 408 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRR-RPYTVVLFDE 486 (693)
Q Consensus 408 ~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~-~~~~vl~iDE 486 (693)
+++|+||||||||.+|.+|+..+...+..+..+.++++........ .. +.+...+.. ....+|+|||
T Consensus 100 nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~-------~~-----~~~~~~l~~l~~~dlLIIDD 167 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAH-------HA-----GRLQAELVKLGRYPLLIVDE 167 (254)
T ss_pred eEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHH-------hc-----CcHHHHHHHhccCCEEEEcc
Confidence 6999999999999999999998865566666555555543321110 00 111122222 3346999999
Q ss_pred CcccC--HHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhh
Q 005511 487 IEKAH--PDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVI 533 (693)
Q Consensus 487 id~l~--~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i 533 (693)
++..+ +..++.|.++++.. +.+.-+|+|||.+...+
T Consensus 168 ~g~~~~~~~~~~~L~~li~~r-----------~~~~s~IitSn~~~~~w 205 (254)
T PRK06526 168 VGYIPFEPEAANLFFQLVSSR-----------YERASLIVTSNKPFGRW 205 (254)
T ss_pred cccCCCCHHHHHHHHHHHHHH-----------HhcCCEEEEcCCCHHHH
Confidence 99874 67778888888652 11224888999776544
No 470
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.56 E-value=4e-06 Score=90.11 Aligned_cols=163 Identities=16% Similarity=0.189 Sum_probs=98.9
Q ss_pred CCccCCHHHHHHHHHHHhcCC------------CCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEecccc
Q 005511 42 DPVVGRQPQIERVVQILGRRT------------KNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLL 109 (693)
Q Consensus 42 ~~iiG~~~~~~~l~~~l~~~~------------~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l 109 (693)
..|.|+|++++.++-.|.... --||||+|.||||||.+.+.+++.+..+.+. .+.|..-+-+
T Consensus 429 PsIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yT-SGkGsSavGL----- 502 (804)
T KOG0478|consen 429 PSIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYT-SGKGSSAVGL----- 502 (804)
T ss_pred hhhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceee-cCCccchhcc-----
Confidence 368899999988665544311 1489999999999999999999877543221 1111100000
Q ss_pred ccCCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC---------------CCcEEE
Q 005511 110 VAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR---------------GELQCI 174 (693)
Q Consensus 110 ~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~---------------~~v~vI 174 (693)
.......+++.+.+.+ -..+...+.++.+|||+|+|..+ ..+.|.+.|+. .+..|+
T Consensus 503 TayVtrd~dtkqlVLe-sGALVLSD~GiCCIDEFDKM~dS--------trSvLhEvMEQQTvSIAKAGII~sLNAR~SVL 573 (804)
T KOG0478|consen 503 TAYVTKDPDTRQLVLE-SGALVLSDNGICCIDEFDKMSDS--------TRSVLHEVMEQQTLSIAKAGIIASLNARCSVL 573 (804)
T ss_pred eeeEEecCccceeeee-cCcEEEcCCceEEchhhhhhhHH--------HHHHHHHHHHHhhhhHhhcceeeeccccceee
Confidence 0000000000000000 01122345668999999999544 56777777763 335689
Q ss_pred EEechHHH--------HhhhhcCHHHhccCC--ccccCCCCHHHHHHHHHHHHHh
Q 005511 175 GATTLDEY--------RKHIEKDPALERRFQ--PVKVPEPSVDETIQILKGLRER 219 (693)
Q Consensus 175 ~~t~~~~~--------~~~~~l~~~l~~Rf~--~i~~~~p~~~e~~~il~~~~~~ 219 (693)
+++|+... ..-+.++|.|+|||+ .+.++.|++..=+.+-.++..-
T Consensus 574 AaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~HivsL 628 (804)
T KOG0478|consen 574 AAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVAL 628 (804)
T ss_pred eeeccccccCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHHHh
Confidence 99985432 234568999999999 4588888887555666666554
No 471
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.55 E-value=1e-07 Score=89.65 Aligned_cols=105 Identities=21% Similarity=0.346 Sum_probs=70.6
Q ss_pred EEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCCcCcCccchhhHHHHcCCCEEEEEccC
Q 005511 408 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEI 487 (693)
Q Consensus 408 ~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEi 487 (693)
+++|+||||||||.+|.++++.+...+.+...++.+++...-... + .......+...+...+ +|+|||+
T Consensus 49 ~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~--------~-~~~~~~~~~~~l~~~d--lLilDDl 117 (178)
T PF01695_consen 49 NLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQS--------R-SDGSYEELLKRLKRVD--LLILDDL 117 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCC--------H-CCTTHCHHHHHHHTSS--CEEEETC
T ss_pred EEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccccc--------c-cccchhhhcCcccccc--Eeccccc
Confidence 699999999999999999999887778888888888776542211 1 1111234455566555 9999998
Q ss_pred ccc--CHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhh
Q 005511 488 EKA--HPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIE 534 (693)
Q Consensus 488 d~l--~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~ 534 (693)
... +....+.|.++++... .+--.|+|||.....+.
T Consensus 118 G~~~~~~~~~~~l~~ii~~R~-----------~~~~tIiTSN~~~~~l~ 155 (178)
T PF01695_consen 118 GYEPLSEWEAELLFEIIDERY-----------ERKPTIITSNLSPSELE 155 (178)
T ss_dssp TSS---HHHHHCTHHHHHHHH-----------HT-EEEEEESS-HHHHH
T ss_pred ceeeecccccccchhhhhHhh-----------cccCeEeeCCCchhhHh
Confidence 765 4567778888887631 12236779998776543
No 472
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.55 E-value=3.9e-07 Score=89.65 Aligned_cols=107 Identities=21% Similarity=0.275 Sum_probs=68.7
Q ss_pred EEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCCcCcCccchhhHHHHcCCCEEEEEccC
Q 005511 408 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEI 487 (693)
Q Consensus 408 ~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEi 487 (693)
+++|+|+||||||++|.+|+..+...+.+++.++.+++....... +.. .......+...+.. ..+|+|||+
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~--~~~-----~~~~~~~~l~~l~~--~dlLvIDDi 171 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDT--FSN-----SETSEEQLLNDLSN--VDLLVIDEI 171 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHH--Hhh-----ccccHHHHHHHhcc--CCEEEEeCC
Confidence 599999999999999999999987667778888777765331110 000 00111234444443 349999999
Q ss_pred cccCH--HHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhh
Q 005511 488 EKAHP--DVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVI 533 (693)
Q Consensus 488 d~l~~--~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i 533 (693)
..... .....|.++++... ..+--.|++||.....+
T Consensus 172 g~~~~s~~~~~~l~~Ii~~Ry----------~~~~~tiitSNl~~~~l 209 (244)
T PRK07952 172 GVQTESRYEKVIINQIVDRRS----------SSKRPTGMLTNSNMEEM 209 (244)
T ss_pred CCCCCCHHHHHHHHHHHHHHH----------hCCCCEEEeCCCCHHHH
Confidence 87643 34556777776521 11234888999776533
No 473
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.54 E-value=2.1e-07 Score=95.78 Aligned_cols=107 Identities=15% Similarity=0.260 Sum_probs=70.2
Q ss_pred eEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCCcCcCccchhhHHHHcCCCEEEEEcc
Q 005511 407 ASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDE 486 (693)
Q Consensus 407 ~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDE 486 (693)
.+++|+||||||||.||.++|+.+...+..++.+...++........+ ....+.....+.+..+. +|+||+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~-------~~~~~~~~~~~~l~~~D--LLIIDD 254 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRF-------NNDKELEEVYDLLINCD--LLIIDD 254 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHh-------ccchhHHHHHHHhccCC--EEEEec
Confidence 369999999999999999999999777777888777776543111000 00001111134444444 999999
Q ss_pred Ccc--cCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhh
Q 005511 487 IEK--AHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSV 532 (693)
Q Consensus 487 id~--l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~ 532 (693)
+.. .++..++.|..+++.... .+.-+|+|||.....
T Consensus 255 lG~e~~t~~~~~~Lf~iin~R~~----------~~k~tIiTSNl~~~e 292 (329)
T PRK06835 255 LGTEKITEFSKSELFNLINKRLL----------RQKKMIISTNLSLEE 292 (329)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHH----------CCCCEEEECCCCHHH
Confidence 954 467778888888876321 122488999977653
No 474
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.53 E-value=5.5e-07 Score=89.36 Aligned_cols=191 Identities=17% Similarity=0.330 Sum_probs=97.1
Q ss_pred ccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhh---
Q 005511 378 VIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKL--- 454 (693)
Q Consensus 378 v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l--- 454 (693)
++|.+..++.|.+.+.... ..+++++||.|+|||++.+.+.+.+...+...+.++............+
T Consensus 1 F~gR~~el~~l~~~l~~~~---------~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 71 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP---------SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEE 71 (234)
T ss_dssp S-S-HHHHHHHHHCHHH-----------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhc---------CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHH
Confidence 3677778888877776431 1269999999999999999999987333323333333222111111111
Q ss_pred ----------cCC-CCCCcC-----------cCccchhhHHHHcC-CCEEEEEccCcccC------HHHHHHHHHHhhcc
Q 005511 455 ----------IGS-PPGYVG-----------YTEGGQLTEAVRRR-PYTVVLFDEIEKAH------PDVFNMMLQILEDG 505 (693)
Q Consensus 455 ----------~g~-~~~~~g-----------~~~~~~l~~~~~~~-~~~vl~iDEid~l~------~~~~~~Ll~~le~~ 505 (693)
++. ..+..+ ...-..+.+.+.+. ...||+|||++.+. +.....|.+.++..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (234)
T PF01637_consen 72 TSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSL 151 (234)
T ss_dssp HHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhc
Confidence 110 000000 00113334444443 34899999999998 56777777777662
Q ss_pred eeeCCCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCC
Q 005511 506 RLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQL 585 (693)
Q Consensus 506 ~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l 585 (693)
. ...+..+|+++...+- ... +.. -.+++.+|+.. +.++|+
T Consensus 152 ~---------~~~~~~~v~~~S~~~~-~~~----------------------------~~~-~~~~~~~~~~~-~~l~~l 191 (234)
T PF01637_consen 152 L---------SQQNVSIVITGSSDSL-MEE----------------------------FLD-DKSPLFGRFSH-IELKPL 191 (234)
T ss_dssp ------------TTEEEEEEESSHHH-HHH----------------------------TT--TTSTTTT---E-EEE---
T ss_pred c---------ccCCceEEEECCchHH-HHH----------------------------hhc-ccCccccccce-EEEeeC
Confidence 1 1234445554432111 100 000 23567889955 999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHh
Q 005511 586 TKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEE 625 (693)
Q Consensus 586 ~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~ 625 (693)
+.++..+++....... ..+.++++.++.+...
T Consensus 192 ~~~e~~~~~~~~~~~~--------~~~~~~~~~~~~i~~~ 223 (234)
T PF01637_consen 192 SKEEAREFLKELFKEL--------IKLPFSDEDIEEIYSL 223 (234)
T ss_dssp -HHHHHHHHHHHHHCC--------------HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh--------hcccCCHHHHHHHHHH
Confidence 9999999987765432 1224578888777764
No 475
>PF05729 NACHT: NACHT domain
Probab=98.53 E-value=1.6e-06 Score=80.94 Aligned_cols=145 Identities=18% Similarity=0.272 Sum_probs=84.1
Q ss_pred CeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCcccchHHHH-----------HHH-HHHHHHh
Q 005511 65 NPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEER-----------LKK-LMEEIKQ 132 (693)
Q Consensus 65 ~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~-----------l~~-~~~~~~~ 132 (693)
-++++|+||+|||++++.++..+.....+... ..-++++.+......... ...... ... ....+..
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 79 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSK-FPYPFFFSLRDISDSNNS-RSLADLLFDQLPESIAPIEELLQELLEK 79 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCccccc-ceEEEEEeehhhhhcccc-chHHHHHHHhhccchhhhHHHHHHHHHc
Confidence 36899999999999999999998764332110 122334444333221110 011111 111 1122335
Q ss_pred CCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC---CCcEEEEEechHHHHhhhhcCHHHhccC---CccccCCCCH
Q 005511 133 SDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR---GELQCIGATTLDEYRKHIEKDPALERRF---QPVKVPEPSV 206 (693)
Q Consensus 133 ~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~---~~v~vI~~t~~~~~~~~~~l~~~l~~Rf---~~i~~~~p~~ 206 (693)
....+|+||.+|.+...............|..++.. .++.+|.++.+..+. .+.+++ ..+.+++.+.
T Consensus 80 ~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~-------~~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 80 NKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFP-------DLRRRLKQAQILELEPFSE 152 (166)
T ss_pred CCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHH-------HHHHhcCCCcEEEECCCCH
Confidence 667899999999986533221222344445555543 456777777665431 244433 3689999999
Q ss_pred HHHHHHHHHHHH
Q 005511 207 DETIQILKGLRE 218 (693)
Q Consensus 207 ~e~~~il~~~~~ 218 (693)
++..++++.+.+
T Consensus 153 ~~~~~~~~~~f~ 164 (166)
T PF05729_consen 153 EDIKQYLRKYFS 164 (166)
T ss_pred HHHHHHHHHHhh
Confidence 999999887654
No 476
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.52 E-value=6.8e-07 Score=89.30 Aligned_cols=184 Identities=18% Similarity=0.289 Sum_probs=107.4
Q ss_pred ccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCC
Q 005511 378 VIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGS 457 (693)
Q Consensus 378 v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~ 457 (693)
++--+++++.+.+..+.. +.|.+|+||.|.+|+||+++++..|... +..++.+.++.-.+....
T Consensus 10 lVlf~~ai~hi~ri~RvL-------~~~~Gh~LLvG~~GsGr~sl~rLaa~i~---~~~~~~i~~~~~y~~~~f------ 73 (268)
T PF12780_consen 10 LVLFDEAIEHIARISRVL-------SQPRGHALLVGVGGSGRQSLARLAAFIC---GYEVFQIEITKGYSIKDF------ 73 (268)
T ss_dssp ----HHHHHHHHHHHHHH-------CSTTEEEEEECTTTSCHHHHHHHHHHHT---TEEEE-TTTSTTTHHHHH------
T ss_pred eeeHHHHHHHHHHHHHHH-------cCCCCCeEEecCCCccHHHHHHHHHHHh---ccceEEEEeeCCcCHHHH------
Confidence 444567777777777655 3556899999999999999999877765 666776665433221111
Q ss_pred CCCCcCcCccchhhHHHH----cCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCe-eecCCeEEEEecCCChhh
Q 005511 458 PPGYVGYTEGGQLTEAVR----RRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRT-VDFKNTLLIMTSNVGSSV 532 (693)
Q Consensus 458 ~~~~~g~~~~~~l~~~~~----~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~-~~~~~~~iI~~tn~~~~~ 532 (693)
...+..++. +..+.+++|++-+-..+..++.+..+|.+|+++...... .+. ++ ..
T Consensus 74 ---------~~dLk~~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~----i~-------~~ 133 (268)
T PF12780_consen 74 ---------KEDLKKALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDN----II-------SS 133 (268)
T ss_dssp ---------HHHHHHHHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHH----HH-------HH
T ss_pred ---------HHHHHHHHHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHH----HH-------HH
Confidence 122323222 345689999999888889999999999999876533210 000 00 00
Q ss_pred hhhcccccccccCcCcccchHHHHHHHHHHHHhhc---------------CchhHhhccCcEEEcCCCCHHHHHHHHHHH
Q 005511 533 IEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQY---------------FRPEFLNRLDEMIVFRQLTKLEVKEIADIM 597 (693)
Q Consensus 533 i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~---------------~~~~l~~R~~~~v~f~~l~~~~~~~i~~~~ 597 (693)
+....+..|+ ..+.+..+.++...+++.++-. --|+|+++| .+.+|.+++.+.+..++..+
T Consensus 134 l~~~~~~~~~---~~~~~~~~~~F~~rvr~nLHivl~~sp~~~~~r~~~~~fPaL~~~c-tIdW~~~W~~eaL~~Va~~~ 209 (268)
T PF12780_consen 134 LREEAKAEGI---SDSRESLYEFFIERVRKNLHIVLCMSPVGPNFRDRCRSFPALVNCC-TIDWFDPWPEEALLSVANKF 209 (268)
T ss_dssp HHHHHHHCT-----SSHHHHHHHHHHHHCCCEEEEEEESTTTTCCCHHHHHHCCHHHHS-EEEEEES--HHHHHHHHHHH
T ss_pred hHHHHHHcCC---CCchHHHHHHHHHHHHhheeEEEEECCCCchHHHHHHhCcchhccc-EEEeCCcCCHHHHHHHHHHH
Confidence 0000111111 1122333444444444433211 138999998 99999999999999999988
Q ss_pred HHHH
Q 005511 598 LKEV 601 (693)
Q Consensus 598 l~~~ 601 (693)
|+..
T Consensus 210 l~~~ 213 (268)
T PF12780_consen 210 LSDI 213 (268)
T ss_dssp CCHH
T ss_pred HHhh
Confidence 8754
No 477
>PRK09183 transposase/IS protein; Provisional
Probab=98.50 E-value=2.9e-07 Score=92.13 Aligned_cols=119 Identities=23% Similarity=0.217 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCcccchHHHHHHHHHH
Q 005511 49 PQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLME 128 (693)
Q Consensus 49 ~~~~~l~~~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~ 128 (693)
..+..|...-......+++|+||||||||+|+.+++..+.. .|..+.+++...+..... .......+...+.
T Consensus 88 ~~i~~L~~~~~i~~~~~v~l~Gp~GtGKThLa~al~~~a~~-------~G~~v~~~~~~~l~~~l~-~a~~~~~~~~~~~ 159 (259)
T PRK09183 88 KQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIALGYEAVR-------AGIKVRFTTAADLLLQLS-TAQRQGRYKTTLQ 159 (259)
T ss_pred HHHHHHhcCCchhcCCeEEEEeCCCCCHHHHHHHHHHHHHH-------cCCeEEEEeHHHHHHHHH-HHHHCCcHHHHHH
Confidence 34555544323455689999999999999999999887643 366777777655432110 0000011223333
Q ss_pred HHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCCcEEEEEechH
Q 005511 129 EIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLD 180 (693)
Q Consensus 129 ~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~t~~~ 180 (693)
... ..+.+|+|||++.+... .........++....+++. +|.+||.+
T Consensus 160 ~~~-~~~dlLiiDdlg~~~~~--~~~~~~lf~li~~r~~~~s--~iiTsn~~ 206 (259)
T PRK09183 160 RGV-MAPRLLIIDEIGYLPFS--QEEANLFFQVIAKRYEKGS--MILTSNLP 206 (259)
T ss_pred HHh-cCCCEEEEcccccCCCC--hHHHHHHHHHHHHHHhcCc--EEEecCCC
Confidence 321 23459999999875322 1111123333433334443 56666653
No 478
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.50 E-value=6.1e-06 Score=90.07 Aligned_cols=72 Identities=19% Similarity=0.153 Sum_probs=47.3
Q ss_pred cCchhHhhccC-cEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEE-eCHHHHHHHHHhccCCCCCcchHHHHHHHHH
Q 005511 567 YFRPEFLNRLD-EMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQ-VTERFRERVVEEGYNPSYGARPLRRAIMRLL 644 (693)
Q Consensus 567 ~~~~~l~~R~~-~~v~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~-~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i 644 (693)
.|+++++.... .+|.|+|....-+.+.+.+.+........ +.... -..++++.|+.. ...+||.+|..+-
T Consensus 194 L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~~--~~~~~p~~~~~l~~I~~~------s~GDIRsAIn~LQ 265 (519)
T PF03215_consen 194 LFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSSS--GKNKVPDKQSVLDSIAES------SNGDIRSAINNLQ 265 (519)
T ss_pred ccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhhc--CCccCCChHHHHHHHHHh------cCchHHHHHHHHH
Confidence 37888886542 56999999999999998888776433221 22111 224568888762 2357999998554
Q ss_pred HH
Q 005511 645 ED 646 (693)
Q Consensus 645 ~~ 646 (693)
..
T Consensus 266 f~ 267 (519)
T PF03215_consen 266 FW 267 (519)
T ss_pred HH
Confidence 43
No 479
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.47 E-value=2e-06 Score=84.15 Aligned_cols=125 Identities=12% Similarity=0.000 Sum_probs=85.1
Q ss_pred CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCC------------CCCCceEEEEeccccccCCcccchHHHHHHHHHH
Q 005511 61 RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPD------------TIEGKKVITLDMGLLVAGTKYRGEFEERLKKLME 128 (693)
Q Consensus 61 ~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~------------~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~ 128 (693)
..+...||+||+|+||..+|.++|+.+.+..... ...+..+..+.... ..-..+.++.+..
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~-------~~I~id~ir~l~~ 77 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQK-------NPIKKEDALSIIN 77 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCc-------ccCCHHHHHHHHH
Confidence 4567789999999999999999999987642110 01122333332111 0112333444444
Q ss_pred HHH-----hCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcC--CCcEEEEEechHHHHhhhhcCHHHhccCCcccc
Q 005511 129 EIK-----QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--GELQCIGATTLDEYRKHIEKDPALERRFQPVKV 201 (693)
Q Consensus 129 ~~~-----~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~ 201 (693)
.+. .++..|++|+++|.|. ..+.|.|++.+|. ..+.+|.+|+.++ .+-|.++||++.+.|
T Consensus 78 ~l~~~s~e~~~~KV~II~~ae~m~--------~~AaNaLLK~LEEPp~~t~fiLit~~~~-----~lLpTI~SRCq~~~~ 144 (261)
T PRK05818 78 KLNRPSVESNGKKIYIIYGIEKLN--------KQSANSLLKLIEEPPKNTYGIFTTRNEN-----NILNTILSRCVQYVV 144 (261)
T ss_pred HHccCchhcCCCEEEEeccHhhhC--------HHHHHHHHHhhcCCCCCeEEEEEECChH-----hCchHhhhheeeeec
Confidence 432 2345799999999995 4488999999985 3577777887776 689999999998888
Q ss_pred CCCC
Q 005511 202 PEPS 205 (693)
Q Consensus 202 ~~p~ 205 (693)
+.+.
T Consensus 145 ~~~~ 148 (261)
T PRK05818 145 LSKE 148 (261)
T ss_pred CChh
Confidence 8873
No 480
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.45 E-value=7.5e-07 Score=88.68 Aligned_cols=105 Identities=18% Similarity=0.361 Sum_probs=71.5
Q ss_pred EEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCCcCcCccchhhHHHHcCCCEEEEEccC
Q 005511 408 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEI 487 (693)
Q Consensus 408 ~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEi 487 (693)
+++|+||||||||.+|-+|++.+...+.++..+..+++...-... +. + |. ....+...+.+.+ +|+|||+
T Consensus 107 nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~--~~----~-~~-~~~~l~~~l~~~d--lLIiDDl 176 (254)
T COG1484 107 NLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAA--FD----E-GR-LEEKLLRELKKVD--LLIIDDI 176 (254)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH--Hh----c-Cc-hHHHHHHHhhcCC--EEEEecc
Confidence 699999999999999999999998667888888888877542211 00 0 11 1133444455555 9999999
Q ss_pred ccc--CHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhh
Q 005511 488 EKA--HPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVI 533 (693)
Q Consensus 488 d~l--~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i 533 (693)
-.. +....+.+++++..... .... |+|||.....+
T Consensus 177 G~~~~~~~~~~~~~q~I~~r~~----------~~~~-~~tsN~~~~~~ 213 (254)
T COG1484 177 GYEPFSQEEADLLFQLISRRYE----------SRSL-IITSNLSFGEW 213 (254)
T ss_pred cCccCCHHHHHHHHHHHHHHHh----------hccc-eeecCCChHHH
Confidence 875 55567777777765221 1223 99999776544
No 481
>PHA00729 NTP-binding motif containing protein
Probab=98.44 E-value=8.4e-07 Score=85.16 Aligned_cols=126 Identities=12% Similarity=0.116 Sum_probs=72.3
Q ss_pred HHHHHHhcCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCC------CCCCCceEEEEeccccccCCcccchHHHHHHHH
Q 005511 53 RVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVP------DTIEGKKVITLDMGLLVAGTKYRGEFEERLKKL 126 (693)
Q Consensus 53 ~l~~~l~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~ 126 (693)
...+.+......+++|+|+|||||||+|.++++.+.....+ ....+..++.++...+. ..+...
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll----------~~L~~a 76 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDAL----------EKIQDA 76 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHH----------HHHHHH
Confidence 34444555566799999999999999999999987421100 00012233334332221 222222
Q ss_pred HHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCCcEEEEEechHHHHhhhhcCHHHhccCCccccCCCCH
Q 005511 127 MEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSV 206 (693)
Q Consensus 127 ~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~ 206 (693)
+... ....+|+|||+..-... ..... + . +...+.+.+++++|+..+.|..++.
T Consensus 77 ~~~~--~~~dlLIIDd~G~~~~~--~~wh~----------~---~----------~~~yf~L~~aLrSR~~l~il~~ls~ 129 (226)
T PHA00729 77 IDND--YRIPLIIFDDAGIWLSK--YVWYE----------D---Y----------MKTFYKIYALIRTRVSAVIFTTPSP 129 (226)
T ss_pred HhcC--CCCCEEEEeCCchhhcc--cchhh----------h---c----------cchHHHHHHHHHhhCcEEEEecCCH
Confidence 2111 11238999997654211 00000 0 0 0112357888999999999999999
Q ss_pred HHHHHHHHH
Q 005511 207 DETIQILKG 215 (693)
Q Consensus 207 ~e~~~il~~ 215 (693)
++....++.
T Consensus 130 edL~~~Lr~ 138 (226)
T PHA00729 130 EDLAFYLRE 138 (226)
T ss_pred HHHHHHHHh
Confidence 998888874
No 482
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.43 E-value=9.4e-07 Score=90.40 Aligned_cols=106 Identities=24% Similarity=0.279 Sum_probs=68.5
Q ss_pred EEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCCcCcCccchhhHHHHcCCCEEEEEccC
Q 005511 408 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEI 487 (693)
Q Consensus 408 ~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEi 487 (693)
+++|+||+|||||.+|.++|+.+...+.+...+.++++...... .++. .......+.+.+++ +|+|||+
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~--~~~~-------~~~~~~l~~l~~~d--lLiIDDi 226 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKN--SISD-------GSVKEKIDAVKEAP--VLMLDDI 226 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHH--HHhc-------CcHHHHHHHhcCCC--EEEEecC
Confidence 59999999999999999999999776777777777776543211 1111 01123344455554 9999999
Q ss_pred cc--cCHHHHHHHHHHh-hcceeeCCCCCeeecCCeEEEEecCCChhhhh
Q 005511 488 EK--AHPDVFNMMLQIL-EDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIE 534 (693)
Q Consensus 488 d~--l~~~~~~~Ll~~l-e~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~ 534 (693)
.. +++.+...++..+ +.. + ..+.-.|+|||.....+.
T Consensus 227 G~e~~s~~~~~~ll~~Il~~R-~---------~~~~~ti~TSNl~~~el~ 266 (306)
T PRK08939 227 GAEQMSSWVRDEVLGVILQYR-M---------QEELPTFFTSNFDFDELE 266 (306)
T ss_pred CCccccHHHHHHHHHHHHHHH-H---------HCCCeEEEECCCCHHHHH
Confidence 65 4555555565544 431 1 113358899998776553
No 483
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.42 E-value=3.6e-07 Score=81.75 Aligned_cols=97 Identities=22% Similarity=0.370 Sum_probs=63.2
Q ss_pred EEEEeccCCCcHHHHHHHHHHHhcCC-----Ccceeeeccccccchhhhh----hhcCCCCCCcCcCc---cchhhHHHH
Q 005511 408 SFIFSGPTGVGKSELAKALAAYYFGS-----EEAMIRLDMSEFMERHTVS----KLIGSPPGYVGYTE---GGQLTEAVR 475 (693)
Q Consensus 408 ~iLl~Gp~GtGKt~lA~~la~~l~~~-----~~~~~~~~~~~~~~~~~~~----~l~g~~~~~~g~~~---~~~l~~~~~ 475 (693)
.++++||||+|||++++.+++.+... ..+++.++++......... .-++.+... +.+. ...+.+.++
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS-RQTSDELRSLLIDALD 84 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-TS-HHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-cCCHHHHHHHHHHHHH
Confidence 58999999999999999999987321 4667777777655322211 122222111 1111 134555666
Q ss_pred cCCCEEEEEccCccc-CHHHHHHHHHHhhcc
Q 005511 476 RRPYTVVLFDEIEKA-HPDVFNMMLQILEDG 505 (693)
Q Consensus 476 ~~~~~vl~iDEid~l-~~~~~~~Ll~~le~~ 505 (693)
.....+|+|||+|.+ +...++.|..++++.
T Consensus 85 ~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~ 115 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLFSDEFLEFLRSLLNES 115 (131)
T ss_dssp HCTEEEEEEETTHHHHTHHHHHHHHHHTCSC
T ss_pred hcCCeEEEEeChHhcCCHHHHHHHHHHHhCC
Confidence 666579999999999 999999998888753
No 484
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.42 E-value=3.3e-05 Score=76.98 Aligned_cols=215 Identities=14% Similarity=0.161 Sum_probs=115.2
Q ss_pred HHHhccccChHHHHHHHHHHHHHHhhcCCCCCC-CceEEEEeccCCCcHHHHHHHHHHHhc---C---CCcceeeecccc
Q 005511 372 ETLHKRVIGQDEAVKAISRAIRRARVGLKNPNR-PIASFIFSGPTGVGKSELAKALAAYYF---G---SEEAMIRLDMSE 444 (693)
Q Consensus 372 ~~l~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~-~~~~iLl~Gp~GtGKt~lA~~la~~l~---~---~~~~~~~~~~~~ 444 (693)
..-....+|...+.+.+...-... ..|++ ..+++|++|++|.|||++++.+.+... . ...|++.+.++.
T Consensus 30 ~i~~~rWIgY~~A~~~L~~L~~Ll----~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~ 105 (302)
T PF05621_consen 30 YIRADRWIGYPRAKEALDRLEELL----EYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPP 105 (302)
T ss_pred HHhcCCeecCHHHHHHHHHHHHHH----hCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCC
Confidence 334567888888766554444322 22322 234699999999999999999998751 1 124667777665
Q ss_pred ccchhhhh----hhcCCCCCCcCcC--ccchhhHHHHcCCCEEEEEccCccc---CHHHHHHHHHHh----hcceeeCCC
Q 005511 445 FMERHTVS----KLIGSPPGYVGYT--EGGQLTEAVRRRPYTVVLFDEIEKA---HPDVFNMMLQIL----EDGRLTDSK 511 (693)
Q Consensus 445 ~~~~~~~~----~l~g~~~~~~g~~--~~~~l~~~~~~~~~~vl~iDEid~l---~~~~~~~Ll~~l----e~~~~~~~~ 511 (693)
-.+...+. .-+|.+....... ........++...-.+|+|||++.+ +..-|..++..+ .+-.++
T Consensus 106 ~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ip--- 182 (302)
T PF05621_consen 106 EPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIP--- 182 (302)
T ss_pred CCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCC---
Confidence 44332221 2234332111111 1134456777788889999999986 333344444444 332222
Q ss_pred CCeeecCCeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCCCHH-HH
Q 005511 512 GRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKL-EV 590 (693)
Q Consensus 512 ~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l~~~-~~ 590 (693)
+|+......-. .+ .-++.+.+|| ..+.++++..+ +.
T Consensus 183 ----------iV~vGt~~A~~------------------------------al--~~D~QLa~RF-~~~~Lp~W~~d~ef 219 (302)
T PF05621_consen 183 ----------IVGVGTREAYR------------------------------AL--RTDPQLASRF-EPFELPRWELDEEF 219 (302)
T ss_pred ----------eEEeccHHHHH------------------------------Hh--ccCHHHHhcc-CCccCCCCCCCcHH
Confidence 44443311110 00 0368999999 77888888543 44
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHHH
Q 005511 591 KEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRL 643 (693)
Q Consensus 591 ~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~ 643 (693)
..++ ..+...+-.+..+---+++..++|... ..+. ..++.+.+...
T Consensus 220 ~~LL----~s~e~~LPLr~~S~l~~~~la~~i~~~-s~G~--iG~l~~ll~~a 265 (302)
T PF05621_consen 220 RRLL----ASFERALPLRKPSNLASPELARRIHER-SEGL--IGELSRLLNAA 265 (302)
T ss_pred HHHH----HHHHHhCCCCCCCCCCCHHHHHHHHHH-cCCc--hHHHHHHHHHH
Confidence 4443 333333322222211345666777664 2233 33455555533
No 485
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.39 E-value=7.2e-06 Score=84.27 Aligned_cols=174 Identities=17% Similarity=0.173 Sum_probs=94.4
Q ss_pred CHHHHHHHHHHHhc--CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccc--------------
Q 005511 47 RQPQIERVVQILGR--RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLV-------------- 110 (693)
Q Consensus 47 ~~~~~~~l~~~l~~--~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~-------------- 110 (693)
|+..+++|.+.|.. ....-+.|+|++|+|||+||..+++....... -..+++++.+...
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~-----f~~v~wv~~~~~~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNR-----FDGVIWVSLSKNPSLEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCC-----CTEEEEEEEES-SCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccc-----ccccccccccccccccccccccccccc
Confidence 57889999998887 55667789999999999999999987431110 1234555543211
Q ss_pred cCCc---ccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhc--CCCcEEEEEechHHHHhh
Q 005511 111 AGTK---YRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA--RGELQCIGATTLDEYRKH 185 (693)
Q Consensus 111 ~~~~---~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~--~~~v~vI~~t~~~~~~~~ 185 (693)
.... ...........+ .......+++|++|+++... ....+...+. ..+..+|.||.....
T Consensus 76 ~~~~~~~~~~~~~~~~~~l-~~~L~~~~~LlVlDdv~~~~----------~~~~l~~~~~~~~~~~kilvTTR~~~v--- 141 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQL-RELLKDKRCLLVLDDVWDEE----------DLEELREPLPSFSSGSKILVTTRDRSV--- 141 (287)
T ss_dssp CC-STSSCCSSHHHHHHHH-HHHHCCTSEEEEEEEE-SHH----------HH-------HCHHSS-EEEEEESCGGG---
T ss_pred ccccccccccccccccccc-hhhhccccceeeeeeecccc----------ccccccccccccccccccccccccccc---
Confidence 0000 112233333333 33334558999999998763 1211222221 234567777765431
Q ss_pred hhcCHHHhccCCccccCCCCHHHHHHHHHHHHHhHhhhcCcccChHHHHHHHHhhhhh
Q 005511 186 IEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQY 243 (693)
Q Consensus 186 ~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 243 (693)
-.........++++.++.++-.+++........ .......++....+++.+.|.
T Consensus 142 ---~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~gl 195 (287)
T PF00931_consen 142 ---AGSLGGTDKVIELEPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGL 195 (287)
T ss_dssp ---GTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-
T ss_pred ---ccccccccccccccccccccccccccccccccc-ccccccccccccccccccccc
Confidence 111222244789999999999999987754321 011122345567777877665
No 486
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=98.39 E-value=4.2e-06 Score=84.83 Aligned_cols=208 Identities=20% Similarity=0.236 Sum_probs=124.7
Q ss_pred ccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccch-------
Q 005511 376 KRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMER------- 448 (693)
Q Consensus 376 ~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~------- 448 (693)
..++|.++.++++...++.+..++... +..++|.||+|+|||++++.|-+.+- ..+++.+..+...+.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~---krIl~L~GPvg~GKSsl~~~Lk~~le--~y~~Y~l~~~Pm~e~PL~L~P~ 135 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEER---KRILLLLGPVGGGKSSLAELLKRGLE--EYPIYTLKGCPMHEEPLHLFPK 135 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCcc---ceEEEEECCCCCCHHHHHHHHHHHhh--eEEEEEecCCccccChhhhCCH
Confidence 479999999999999999887765432 23588999999999999999999871 223333322211100
Q ss_pred --------------------hhhhhh----cC-----------------------CCCC--------CcCcCccchhh--
Q 005511 449 --------------------HTVSKL----IG-----------------------SPPG--------YVGYTEGGQLT-- 471 (693)
Q Consensus 449 --------------------~~~~~l----~g-----------------------~~~~--------~~g~~~~~~l~-- 471 (693)
.....| -| .|.. .+|.-..+.+.
T Consensus 136 ~~r~~~~~~~~~~i~g~l~p~~~~~L~~~y~Gd~~~~~V~r~~~S~~~r~GI~~f~P~D~~~qd~s~LtG~vd~~kl~~~ 215 (358)
T PF08298_consen 136 ELRREFEDELGIRIEGELCPWCRKRLLEEYGGDIEKFRVERLYFSERDRVGIGTFEPGDEKNQDISDLTGSVDIRKLAEY 215 (358)
T ss_pred hHHHHHHHHhCcccCCCcCHHHHHHHHHHhCCCccEEEEEEEccceecceeEEEECCCCCCCcchhhhhhHHHHHHHhhh
Confidence 000000 00 0000 11100001111
Q ss_pred -----------HHHHcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhccccc
Q 005511 472 -----------EAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRI 540 (693)
Q Consensus 472 -----------~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~ 540 (693)
+.+..+.+|++=|=|+-|.+.+.+..||.+.++|.+....+-....-+.+||+.||...- ..
T Consensus 216 s~~dp~af~~~G~l~~aNrGi~ef~E~~K~~~~~L~~LL~~tqEg~ik~~~~~~~i~~D~liiAhsNe~E~--~~----- 288 (358)
T PF08298_consen 216 SESDPRAFSYSGELNRANRGIMEFVEMLKAPIEFLHPLLTATQEGNIKVDEDFGMIPFDELIIAHSNEEEY--NK----- 288 (358)
T ss_pred ccCCCeeEeeccHHHHhhchhHHHHHHhcCcHHHHHHHhcchhcCceecCCcccccccceeEEecCCHHHH--HH-----
Confidence 122334456666667888899999999999999998864433333447889999983221 00
Q ss_pred ccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCcEEEcCCC-CHHHHHHHHHHHHHHHHHHHhcCCCeEEeCHHHH
Q 005511 541 GFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQL-TKLEVKEIADIMLKEVFDRLKTKDIELQVTERFR 619 (693)
Q Consensus 541 ~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~~v~f~~l-~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~ 619 (693)
| ....-.++|.+|+ .+|.++.. +..+=.+|.++.+.+.. -...++.|.++
T Consensus 289 -f---------------------~~~~~~eAf~DRi-~~I~VPY~L~~s~E~kIY~k~~~~s~------l~~~h~aP~~L 339 (358)
T PF08298_consen 289 -F---------------------KNNKNNEAFKDRI-EVIKVPYCLRVSEEVKIYEKLIGKSD------LRDAHIAPHTL 339 (358)
T ss_pred -H---------------------hccccchhhhhhe-EEEeccccCCHHHHHHHHHHHhhhcc------ccccccCchHH
Confidence 0 0011347999999 88888764 66666677777664310 11346778777
Q ss_pred HHHHH
Q 005511 620 ERVVE 624 (693)
Q Consensus 620 ~~l~~ 624 (693)
+.++.
T Consensus 340 ~~aA~ 344 (358)
T PF08298_consen 340 EMAAR 344 (358)
T ss_pred HHHHH
Confidence 76665
No 487
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.38 E-value=6.7e-07 Score=85.28 Aligned_cols=47 Identities=38% Similarity=0.608 Sum_probs=33.4
Q ss_pred CccCCHHHHHHHHHHH---hcCCCCCeEEECCCCChHHHHHHHHHHHHhc
Q 005511 43 PVVGRQPQIERVVQIL---GRRTKNNPCLIGEPGVGKTAIAEGLAQRIAS 89 (693)
Q Consensus 43 ~iiG~~~~~~~l~~~l---~~~~~~~vLl~Gp~GtGKT~la~~la~~l~~ 89 (693)
+++||+++++++...+ ....+++++++|++|+|||++++.+.+.+..
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~ 50 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAE 50 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4799999999999988 3345678999999999999999999988865
No 488
>PRK09183 transposase/IS protein; Provisional
Probab=98.36 E-value=6.1e-07 Score=89.84 Aligned_cols=103 Identities=19% Similarity=0.308 Sum_probs=64.5
Q ss_pred EEEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCCcCcCccchhhHHHH--cCCCEEEEEc
Q 005511 408 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVR--RRPYTVVLFD 485 (693)
Q Consensus 408 ~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~--~~~~~vl~iD 485 (693)
+++|+||||||||++|.+++......+..+..+++.++...-.... .. +.+...+. .....+++||
T Consensus 104 ~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~-----------~~-~~~~~~~~~~~~~~dlLiiD 171 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQ-----------RQ-GRYKTTLQRGVMAPRLLIID 171 (259)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHH-----------HC-CcHHHHHHHHhcCCCEEEEc
Confidence 5999999999999999999987655555666666555442211100 00 11111221 1234699999
Q ss_pred cCccc--CHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhh
Q 005511 486 EIEKA--HPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVI 533 (693)
Q Consensus 486 Eid~l--~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i 533 (693)
|+... +....+.|+++++... .+.-+|+|||.+...+
T Consensus 172 dlg~~~~~~~~~~~lf~li~~r~-----------~~~s~iiTsn~~~~~w 210 (259)
T PRK09183 172 EIGYLPFSQEEANLFFQVIAKRY-----------EKGSMILTSNLPFGQW 210 (259)
T ss_pred ccccCCCChHHHHHHHHHHHHHH-----------hcCcEEEecCCCHHHH
Confidence 99874 5566677888886521 1123788999877644
No 489
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.35 E-value=9.6e-07 Score=86.24 Aligned_cols=123 Identities=22% Similarity=0.323 Sum_probs=76.2
Q ss_pred CCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCcccchHHHHHHHHHHHHHhCCCeEEEEec
Q 005511 63 KNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDE 142 (693)
Q Consensus 63 ~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDE 142 (693)
..+..++||+|||||..++.+|+.+ |..++.++|+.... ...+.+++.-+.+. ++++++||
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~l----------G~~~~vfnc~~~~~--------~~~l~ril~G~~~~-GaW~cfde 92 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARAL----------GRFVVVFNCSEQMD--------YQSLSRILKGLAQS-GAWLCFDE 92 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCT----------T--EEEEETTSSS---------HHHHHHHHHHHHHH-T-EEEEET
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHh----------CCeEEEeccccccc--------HHHHHHHHHHHhhc-Cchhhhhh
Confidence 4566789999999999999999998 88899999977542 23356666555443 56999999
Q ss_pred cchhhhCCCCCChHhHHHHHhhh-------hcC---------------CCcEEEEEechHHHHhhhhcCHHHhccCCccc
Q 005511 143 VHTLIGAGAAEGAIDAANILKPS-------LAR---------------GELQCIGATTLDEYRKHIEKDPALERRFQPVK 200 (693)
Q Consensus 143 id~l~~~~~~~~~~~~~~~L~~~-------l~~---------------~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~~i~ 200 (693)
++++.. ++++.+-+. +.. ....+..++|+ .+...-.+++.++..|..+.
T Consensus 93 fnrl~~--------~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np-~y~gr~~LP~nLk~lFRpva 163 (231)
T PF12774_consen 93 FNRLSE--------EVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNP-GYAGRSELPENLKALFRPVA 163 (231)
T ss_dssp CCCSSH--------HHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B--CCCC--S-HHHCTTEEEEE
T ss_pred hhhhhH--------HHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeecc-ccCCcccCCHhHHHHhheeE
Confidence 999843 233333222 211 22445566664 45445568999999999999
Q ss_pred cCCCCHHHHHHHH
Q 005511 201 VPEPSVDETIQIL 213 (693)
Q Consensus 201 ~~~p~~~e~~~il 213 (693)
+-.|+.....+++
T Consensus 164 m~~PD~~~I~ei~ 176 (231)
T PF12774_consen 164 MMVPDLSLIAEIL 176 (231)
T ss_dssp --S--HHHHHHHH
T ss_pred EeCCCHHHHHHHH
Confidence 9999987665543
No 490
>PF05729 NACHT: NACHT domain
Probab=98.35 E-value=2.9e-06 Score=79.15 Aligned_cols=144 Identities=17% Similarity=0.251 Sum_probs=81.8
Q ss_pred EEEEeccCCCcHHHHHHHHHHHhcCCC------cceeeeccccccchh---hhhhhcCCCCCCcCcCccchhhHHHHcCC
Q 005511 408 SFIFSGPTGVGKSELAKALAAYYFGSE------EAMIRLDMSEFMERH---TVSKLIGSPPGYVGYTEGGQLTEAVRRRP 478 (693)
Q Consensus 408 ~iLl~Gp~GtGKt~lA~~la~~l~~~~------~~~~~~~~~~~~~~~---~~~~l~g~~~~~~g~~~~~~l~~~~~~~~ 478 (693)
.++++|+||+|||++++.++..+.... .-.+.+.+.+..... ...+++..............+........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 388999999999999999998873322 122344444443322 12222211100000000012334555677
Q ss_pred CEEEEEccCcccCHHH--------HHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhhhhcccccccccCcCccc
Q 005511 479 YTVVLFDEIEKAHPDV--------FNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKD 550 (693)
Q Consensus 479 ~~vl~iDEid~l~~~~--------~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~ 550 (693)
..+|+||-+|.+.... .+.|..++... ...++.+|+++.....
T Consensus 82 ~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~----------~~~~~~liit~r~~~~------------------- 132 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQA----------LPPGVKLIITSRPRAF------------------- 132 (166)
T ss_pred ceEEEEechHhcccchhhhHHHHHHHHHHHHhhhc----------cCCCCeEEEEEcCChH-------------------
Confidence 7899999999986632 23444555431 1335667777763321
Q ss_pred chHHHHHHHHHHHHhhcCchhHhhccC--cEEEcCCCCHHHHHHHHHHHHH
Q 005511 551 SSYNRIKSLVTEELKQYFRPEFLNRLD--EMIVFRQLTKLEVKEIADIMLK 599 (693)
Q Consensus 551 ~~~~~l~~~~~~~l~~~~~~~l~~R~~--~~v~f~~l~~~~~~~i~~~~l~ 599 (693)
+.+...+. ..+...+++.+++.++++++++
T Consensus 133 -------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 133 -------------------PDLRRRLKQAQILELEPFSEEDIKQYLRKYFS 164 (166)
T ss_pred -------------------HHHHHhcCCCcEEEECCCCHHHHHHHHHHHhh
Confidence 11222221 5688999999999999988765
No 491
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.35 E-value=1.3e-05 Score=85.03 Aligned_cols=147 Identities=18% Similarity=0.187 Sum_probs=80.5
Q ss_pred CccCCHHHHHHHHHHHhcCC------------CCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccc
Q 005511 43 PVVGRQPQIERVVQILGRRT------------KNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLV 110 (693)
Q Consensus 43 ~iiG~~~~~~~l~~~l~~~~------------~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~ 110 (693)
.+.|++.++..+.-.|...- -.|+||+|.||||||-+.+.+++..... +-..+.|..-+-+.+....
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RA-V~tTGqGASavGLTa~v~K 528 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRA-VFTTGQGASAVGLTAYVRK 528 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcce-eEeccCCccccceeEEEee
Confidence 58899999999887765421 2489999999999999999998765221 1111112111111111111
Q ss_pred cCCcccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHH---------HhhhhcCCCcEEEEEech--
Q 005511 111 AGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANI---------LKPSLARGELQCIGATTL-- 179 (693)
Q Consensus 111 ~~~~~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~---------L~~~l~~~~v~vI~~t~~-- 179 (693)
. .-.-+|.+.. +.+.....+|.+|||+|+|.......-. ++++. +...| .....+|+|+|+
T Consensus 529 d----PvtrEWTLEa--GALVLADkGvClIDEFDKMndqDRtSIH-EAMEQQSISISKAGIVtsL-qArctvIAAanPig 600 (854)
T KOG0477|consen 529 D----PVTREWTLEA--GALVLADKGVCLIDEFDKMNDQDRTSIH-EAMEQQSISISKAGIVTSL-QARCTVIAAANPIG 600 (854)
T ss_pred C----Cccceeeecc--CeEEEccCceEEeehhhhhcccccchHH-HHHHhcchhhhhhhHHHHH-HhhhhhheecCCCC
Confidence 1 1112222221 1222345568999999999643211110 01000 11111 234678999987
Q ss_pred ------HHHHhhhhcCHHHhccCCc
Q 005511 180 ------DEYRKHIEKDPALERRFQP 198 (693)
Q Consensus 180 ------~~~~~~~~l~~~l~~Rf~~ 198 (693)
..+..-..+...+++||+.
T Consensus 601 GRY~~s~tFaqNV~ltePIlSRFDi 625 (854)
T KOG0477|consen 601 GRYNPSLTFAQNVDLTEPILSRFDI 625 (854)
T ss_pred CccCCccchhhccccccchhhhcce
Confidence 3333334567789999983
No 492
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.35 E-value=1.7e-07 Score=97.42 Aligned_cols=155 Identities=19% Similarity=0.251 Sum_probs=83.0
Q ss_pred CCccCCHHHHHHHHHHHhcC------------CCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccc-
Q 005511 42 DPVVGRQPQIERVVQILGRR------------TKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGL- 108 (693)
Q Consensus 42 ~~iiG~~~~~~~l~~~l~~~------------~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~- 108 (693)
..+.|++.++..+.-.|-.. ..-|+||+|.||+|||.+.+.+++..+. -++++...
T Consensus 24 P~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr-----------~v~~~g~~~ 92 (331)
T PF00493_consen 24 PSIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPR-----------SVYTSGKGS 92 (331)
T ss_dssp STTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SS-----------EEEEECCGS
T ss_pred CcCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCc-----------eEEECCCCc
Confidence 36889999888755544321 1248999999999999999877654421 12222211
Q ss_pred ----cccC-Cc--ccchHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCC-----------
Q 005511 109 ----LVAG-TK--YRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGE----------- 170 (693)
Q Consensus 109 ----l~~~-~~--~~g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~----------- 170 (693)
+... .+ ..++ +.+.. +.+....++|++|||+|.+.. +....|...|+++.
T Consensus 93 s~~gLta~~~~d~~~~~--~~lea--Galvlad~GiccIDe~dk~~~--------~~~~~l~eaMEqq~isi~kagi~~~ 160 (331)
T PF00493_consen 93 SAAGLTASVSRDPVTGE--WVLEA--GALVLADGGICCIDEFDKMKE--------DDRDALHEAMEQQTISIAKAGIVTT 160 (331)
T ss_dssp TCCCCCEEECCCGGTSS--ECEEE---HHHHCTTSEEEECTTTT--C--------HHHHHHHHHHHCSCEEECTSSSEEE
T ss_pred ccCCccceeccccccce--eEEeC--CchhcccCceeeecccccccc--------hHHHHHHHHHHcCeeccchhhhccc
Confidence 1100 00 0111 11111 122234566999999999843 35677888887543
Q ss_pred ----cEEEEEechHHHH--------hhhhcCHHHhccCC-c-cccCCCCHHHHHHHHHHHHHh
Q 005511 171 ----LQCIGATTLDEYR--------KHIEKDPALERRFQ-P-VKVPEPSVDETIQILKGLRER 219 (693)
Q Consensus 171 ----v~vI~~t~~~~~~--------~~~~l~~~l~~Rf~-~-i~~~~p~~~e~~~il~~~~~~ 219 (693)
..|++++|+.... ..+.+++.+++||+ . +..+.++.+.-..+.+++++.
T Consensus 161 l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~ 223 (331)
T PF00493_consen 161 LNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDS 223 (331)
T ss_dssp EE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTT
T ss_pred ccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEec
Confidence 5688999876421 12357889999999 3 456777776666666666543
No 493
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.34 E-value=1.7e-05 Score=82.30 Aligned_cols=161 Identities=18% Similarity=0.257 Sum_probs=94.0
Q ss_pred hhhhcCCCCCccCCHHHHHHHHHHHhcCC------------CCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceE
Q 005511 34 KLAEEGKLDPVVGRQPQIERVVQILGRRT------------KNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKV 101 (693)
Q Consensus 34 ~~~~~~~~~~iiG~~~~~~~l~~~l~~~~------------~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~ 101 (693)
+++...--.+|.|++++++.|+-+|-... .-||+|.|.||+.||-|.+.+.+....+.
T Consensus 334 ekLa~SiAPEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgv---------- 403 (721)
T KOG0482|consen 334 EKLAASIAPEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGV---------- 403 (721)
T ss_pred HHHHHhhchhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccc----------
Confidence 33333344579999999999887764311 13889999999999999999997664321
Q ss_pred EEEeccccccCCcccchHHHHHHH-HHHH-------HHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhc------
Q 005511 102 ITLDMGLLVAGTKYRGEFEERLKK-LMEE-------IKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLA------ 167 (693)
Q Consensus 102 ~~~~~~~l~~~~~~~g~~~~~l~~-~~~~-------~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~------ 167 (693)
+... .|++.+|-+...++. +.++ +...+.+|.+|||+|+|...+ -.++...|+
T Consensus 404 YTTG-----rGSSGVGLTAAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~D--------RtAIHEVMEQQTISI 470 (721)
T KOG0482|consen 404 YTTG-----RGSSGVGLTAAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESD--------RTAIHEVMEQQTISI 470 (721)
T ss_pred eecC-----CCCCccccchhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhh--------hHHHHHHHHhhhhhh
Confidence 1111 011112211111111 0011 112345688999999996432 112222222
Q ss_pred ---------CCCcEEEEEechH--------HHHhhhhcCHHHhccCC--ccccCCCCHHHHHHHHHHHH
Q 005511 168 ---------RGELQCIGATTLD--------EYRKHIEKDPALERRFQ--PVKVPEPSVDETIQILKGLR 217 (693)
Q Consensus 168 ---------~~~v~vI~~t~~~--------~~~~~~~l~~~l~~Rf~--~i~~~~p~~~e~~~il~~~~ 217 (693)
+.+..|++++|+. ....-+.++.+|+|||+ .+..+.|+.+.-..+.+++.
T Consensus 471 aKAGI~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiT 539 (721)
T KOG0482|consen 471 AKAGINTTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHIT 539 (721)
T ss_pred hhhccccchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhH
Confidence 2335667777742 11234568999999998 56778888775555555543
No 494
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.34 E-value=1.1e-05 Score=71.51 Aligned_cols=143 Identities=19% Similarity=0.266 Sum_probs=79.3
Q ss_pred CCCCeEEECCCCChHHHHHHHHHHHHhcCCC-------CCCC-----CCceEEEEeccc---c---ccCC----cc---c
Q 005511 62 TKNNPCLIGEPGVGKTAIAEGLAQRIASGDV-------PDTI-----EGKKVITLDMGL---L---VAGT----KY---R 116 (693)
Q Consensus 62 ~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~-------~~~~-----~~~~~~~~~~~~---l---~~~~----~~---~ 116 (693)
..-.+.++|+||+||||++..++..+..... |+.- .|.+++.+.... + ..+. +| .
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v 83 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNV 83 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeH
Confidence 3456899999999999999999999876422 1100 122333332100 0 0011 11 1
Q ss_pred chHHHHHHHHHHHHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCCcEEEEEechHHHHhhhhcCH---HHh
Q 005511 117 GEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGATTLDEYRKHIEKDP---ALE 193 (693)
Q Consensus 117 g~~~~~l~~~~~~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~v~vI~~t~~~~~~~~~~l~~---~l~ 193 (693)
...+......++.|.++.. +++|||+..|--. +..+...+...+.++.. +|++-.... .+| .++
T Consensus 84 ~~le~i~~~al~rA~~~aD-vIIIDEIGpMElk-----s~~f~~~ve~vl~~~kp-liatlHrrs------r~P~v~~ik 150 (179)
T COG1618 84 EGLEEIAIPALRRALEEAD-VIIIDEIGPMELK-----SKKFREAVEEVLKSGKP-LIATLHRRS------RHPLVQRIK 150 (179)
T ss_pred HHHHHHhHHHHHHHhhcCC-EEEEecccchhhc-----cHHHHHHHHHHhcCCCc-EEEEEeccc------CChHHHHhh
Confidence 1233333344555545522 8999999988432 34566777777876664 666655432 243 344
Q ss_pred ccCCccccCCCCHHHHHHHHHHHHHh
Q 005511 194 RRFQPVKVPEPSVDETIQILKGLRER 219 (693)
Q Consensus 194 ~Rf~~i~~~~p~~~e~~~il~~~~~~ 219 (693)
+++..+.| .+++-|-.|+..++..
T Consensus 151 ~~~~v~v~--lt~~NR~~i~~~Il~~ 174 (179)
T COG1618 151 KLGGVYVF--LTPENRNRILNEILSV 174 (179)
T ss_pred hcCCEEEE--EccchhhHHHHHHHHH
Confidence 45554443 4555555666666553
No 495
>PRK06921 hypothetical protein; Provisional
Probab=98.34 E-value=7.9e-07 Score=89.26 Aligned_cols=103 Identities=17% Similarity=0.202 Sum_probs=63.4
Q ss_pred EEEEeccCCCcHHHHHHHHHHHhcCC-CcceeeeccccccchhhhhhhcCCCCCCcCcCccchhhHHHHcCCCEEEEEcc
Q 005511 408 SFIFSGPTGVGKSELAKALAAYYFGS-EEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDE 486 (693)
Q Consensus 408 ~iLl~Gp~GtGKt~lA~~la~~l~~~-~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDE 486 (693)
+++|+||||+|||.++.+|++.+... +..++.+...++.... ... + .........+..+ .+|+|||
T Consensus 119 ~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l--~~~------~---~~~~~~~~~~~~~--dlLiIDD 185 (266)
T PRK06921 119 SIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDL--KDD------F---DLLEAKLNRMKKV--EVLFIDD 185 (266)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHH--HHH------H---HHHHHHHHHhcCC--CEEEEec
Confidence 69999999999999999999998654 5566666654443211 000 0 0001122333333 4999999
Q ss_pred Ccc-------cCHHHHHHHHHHhhcceeeCCCCCeeecCCeEEEEecCCChhhh
Q 005511 487 IEK-------AHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVI 533 (693)
Q Consensus 487 id~-------l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~iI~~tn~~~~~i 533 (693)
++. ++...++.|..+++...- .+.-+|+|||.....+
T Consensus 186 l~~~~~g~e~~t~~~~~~lf~iin~R~~----------~~k~tIitsn~~~~el 229 (266)
T PRK06921 186 LFKPVNGKPRATEWQIEQMYSVLNYRYL----------NHKPILISSELTIDEL 229 (266)
T ss_pred cccccCCCccCCHHHHHHHHHHHHHHHH----------CCCCEEEECCCCHHHH
Confidence 944 455566777777765210 1123688999776544
No 496
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.30 E-value=1e-05 Score=88.66 Aligned_cols=174 Identities=20% Similarity=0.276 Sum_probs=105.0
Q ss_pred CccCCHHHHHHHHHHHh--cCCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCceEEEEeccccccCCcccchHH
Q 005511 43 PVVGRQPQIERVVQILG--RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGLLVAGTKYRGEFE 120 (693)
Q Consensus 43 ~iiG~~~~~~~l~~~l~--~~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 120 (693)
.++|....+..+...+. .....+++++|++||||+++++++...... .+.+++.++|+.+... ..+
T Consensus 140 ~lig~s~~~~~~~~~i~~~~~~~~~vli~ge~g~gk~~~a~~ih~~s~~-------~~~~~i~~~c~~~~~~-----~~~ 207 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSAR-------SEKPLVTLNCAALNES-----LLE 207 (441)
T ss_pred ceEecCHHHHHHHHHHhhccCCCCeEEEEecCCCCHHHHHHHHHHcCCC-------CCCCeeeeeCCCCCHH-----HHH
Confidence 47777777666554432 244578999999999999999999876532 2567999998765310 000
Q ss_pred HHHHHHHH---------------HHHhCCCeEEEEeccchhhhCCCCCChHhHHHHHhhhhcCCC-------------cE
Q 005511 121 ERLKKLME---------------EIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGE-------------LQ 172 (693)
Q Consensus 121 ~~l~~~~~---------------~~~~~~~~vL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~-------------v~ 172 (693)
..+|+ ......+++|||||++.|.+ ..+..|...++.+. +.
T Consensus 208 ---~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~--------~~q~~l~~~l~~~~~~~~~~~~~~~~~~r 276 (441)
T PRK10365 208 ---SELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP--------MMQVRLLRAIQEREVQRVGSNQTISVDVR 276 (441)
T ss_pred ---HHhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccCCH--------HHHHHHHHHHccCcEEeCCCCceeeeceE
Confidence 11111 12234567999999999954 36777777776543 56
Q ss_pred EEEEechHHHHhh--hhcCHHHhccCCccccCCCCHHHH----HHHHHHHHHhHhhhcC---cccChHHHHHHHHh
Q 005511 173 CIGATTLDEYRKH--IEKDPALERRFQPVKVPEPSVDET----IQILKGLRERYEIHHK---LRYTDEALVSAAQL 239 (693)
Q Consensus 173 vI~~t~~~~~~~~--~~l~~~l~~Rf~~i~~~~p~~~e~----~~il~~~~~~~~~~~~---~~~~~~~l~~l~~~ 239 (693)
+|++|+....... -.+.+.|..|+..+.+..|+..+| ..+.+.++.++....+ ..++++++..+...
T Consensus 277 ii~~t~~~~~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 352 (441)
T PRK10365 277 LIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHY 352 (441)
T ss_pred EEEeCCCCHHHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC
Confidence 8888776532110 124555666776555655655544 4445555544322211 24677776666553
No 497
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.30 E-value=7.3e-06 Score=81.20 Aligned_cols=176 Identities=22% Similarity=0.318 Sum_probs=106.6
Q ss_pred HHHHHhhhhhhhhcCCCCCccCCHHHHHHHHHHHhc----CCCCCeEEECCCCChHHHHHHHHHHHHhcCCCCCCCCCce
Q 005511 25 LEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGR----RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKK 100 (693)
Q Consensus 25 l~~~~~~l~~~~~~~~~~~iiG~~~~~~~l~~~l~~----~~~~~vLl~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~ 100 (693)
|...-+-+.++.-. .--.+.|..++-+.+.++++. ...+.+++.||.|+|||+++........+ .+..
T Consensus 8 l~siqr~l~~rl~~-~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~-------~~E~ 79 (408)
T KOG2228|consen 8 LSSIQRILRERLCG-PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQE-------NGEN 79 (408)
T ss_pred HHHHHHHHHHHhcC-CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHh-------cCCe
Confidence 34444444444322 344578887777777777654 66789999999999999988766555221 1333
Q ss_pred EEE--Eeccccc-----------------cCCcccchHHHHHHHHHHHHHhC-----CCeEEEEeccchhhhCCCCCChH
Q 005511 101 VIT--LDMGLLV-----------------AGTKYRGEFEERLKKLMEEIKQS-----DEIILFIDEVHTLIGAGAAEGAI 156 (693)
Q Consensus 101 ~~~--~~~~~l~-----------------~~~~~~g~~~~~l~~~~~~~~~~-----~~~vL~iDEid~l~~~~~~~~~~ 156 (693)
++. +++.... ...+..|.+.+.+..++..++.+ .+.|+++||+|.+.+..
T Consensus 80 ~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~------ 153 (408)
T KOG2228|consen 80 FLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS------ 153 (408)
T ss_pred EEEEEECccchhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch------
Confidence 333 3332111 11222344455555555555432 24567788999886531
Q ss_pred hHHHHHhhhhc-----CCCcEEEEEechHHHHhhhhcCHHHhccCC--cc-ccCCCCHHHHHHHHHHHH
Q 005511 157 DAANILKPSLA-----RGELQCIGATTLDEYRKHIEKDPALERRFQ--PV-KVPEPSVDETIQILKGLR 217 (693)
Q Consensus 157 ~~~~~L~~~l~-----~~~v~vI~~t~~~~~~~~~~l~~~l~~Rf~--~i-~~~~p~~~e~~~il~~~~ 217 (693)
-+..|..+.+ +..+.+|+.|+.-+..+. +...+.+||. +| .+|..+.++-..+++..+
T Consensus 154 -rQtllYnlfDisqs~r~Piciig~Ttrld~lE~--LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 154 -RQTLLYNLFDISQSARAPICIIGVTTRLDILEL--LEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred -hhHHHHHHHHHHhhcCCCeEEEEeeccccHHHH--HHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 2333444432 566889999988765433 5788999995 34 555556678777777665
No 498
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.28 E-value=1.5e-05 Score=86.38 Aligned_cols=217 Identities=17% Similarity=0.128 Sum_probs=129.8
Q ss_pred hccccChHHHHHHHHHHHHHHhhcCCCCCCCceEEEEeccCCCcHHHHHHHHHHHhc-------CCCcceeeeccccccc
Q 005511 375 HKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYF-------GSEEAMIRLDMSEFME 447 (693)
Q Consensus 375 ~~~v~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~iLl~Gp~GtGKt~lA~~la~~l~-------~~~~~~~~~~~~~~~~ 447 (693)
.+.+.+.+.....|-..++..... ......+.+.|-||||||.....+-+.|- .....++.+|.-.+.+
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~----~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~ 470 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISD----QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLAS 470 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCC----CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecC
Confidence 445666777777776666654321 11122588999999999999999888763 2346777888777765
Q ss_pred hhhhhhhcCCCCCCcCcCcc-----chhhHHH----HcCCCEEEEEccCcccCHHHHHHHHHHhhcceeeCCCCCeeecC
Q 005511 448 RHTVSKLIGSPPGYVGYTEG-----GQLTEAV----RRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFK 518 (693)
Q Consensus 448 ~~~~~~l~g~~~~~~g~~~~-----~~l~~~~----~~~~~~vl~iDEid~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~ 518 (693)
.......+-. .+.|+... ..|...+ .+...+||+|||.|.|-..-|..|..+++--.. ..+
T Consensus 471 ~~~~Y~~I~~--~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~--------~~s 540 (767)
T KOG1514|consen 471 PREIYEKIWE--ALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTL--------KNS 540 (767)
T ss_pred HHHHHHHHHH--hcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcC--------CCC
Confidence 5433221100 02222211 1111111 123468999999999988888888888876332 234
Q ss_pred CeEEEEecCCChhhhhhcccccccccCcCcccchHHHHHHHHHHHHhhcCchhHhhccCc-EEEcCCCCHHHHHHHHHHH
Q 005511 519 NTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDE-MIVFRQLTKLEVKEIADIM 597 (693)
Q Consensus 519 ~~~iI~~tn~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~R~~~-~v~f~~l~~~~~~~i~~~~ 597 (693)
+.++|+.+|--.- - + +.|.+-.-+|++. .+.|.||+.+++.+|+...
T Consensus 541 KLvvi~IaNTmdl---------------------P-------E----r~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~R 588 (767)
T KOG1514|consen 541 KLVVIAIANTMDL---------------------P-------E----RLLMNRVSSRLGLTRICFQPYTHEQLQEIISAR 588 (767)
T ss_pred ceEEEEecccccC---------------------H-------H----HHhccchhhhccceeeecCCCCHHHHHHHHHHh
Confidence 5667776662110 0 0 0033344466654 4999999999999999877
Q ss_pred HHHHHHHHhcCCCeEEeCHHHHHHHHHhccCCCCCcchHHHHHHHHHHHH
Q 005511 598 LKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDS 647 (693)
Q Consensus 598 l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~~~ 647 (693)
|... ..|..++.+..+++--.-...+|.-...+.++.+-+
T Consensus 589 L~~~----------~~f~~~aielvarkVAavSGDaRraldic~RA~Eia 628 (767)
T KOG1514|consen 589 LKGL----------DAFENKAIELVARKVAAVSGDARRALDICRRAAEIA 628 (767)
T ss_pred hcch----------hhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 7643 246778887777652211122665555555555443
No 499
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.28 E-value=1.8e-06 Score=74.00 Aligned_cols=98 Identities=26% Similarity=0.409 Sum_probs=57.2
Q ss_pred EEEeccCCCcHHHHHHHHHHHhcCCCcceeeeccccccchhhhhhhcCCCCCCcCcCccchhhHHHHcCCCEEEEEccCc
Q 005511 409 FIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIE 488 (693)
Q Consensus 409 iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid 488 (693)
|.|+||||+|||++|+.|++.+... +..-....+.......+. -.||.| ..++++||+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~---~~~~~~~~vy~~~~~~~~---w~gY~~---------------q~vvi~DD~~ 59 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH---IGEPTKDSVYTRNPGDKF---WDGYQG---------------QPVVIIDDFG 59 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH---hccCCCCcEEeCCCccch---hhccCC---------------CcEEEEeecC
Confidence 4789999999999999999887321 100000111100000000 012332 2489999999
Q ss_pred ccCHH----HHHHHHHHhhcceeeCCC----CCeeecCCeEEEEecC
Q 005511 489 KAHPD----VFNMMLQILEDGRLTDSK----GRTVDFKNTLLIMTSN 527 (693)
Q Consensus 489 ~l~~~----~~~~Ll~~le~~~~~~~~----~~~~~~~~~~iI~~tn 527 (693)
..... ....|+++++...+...- .....+.--+||+|||
T Consensus 60 ~~~~~~~~~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s~~vi~tsN 106 (107)
T PF00910_consen 60 QDNDGYNYSDESELIRLISSNPFQPNMADLEDKGTPFNSKLVIITSN 106 (107)
T ss_pred ccccccchHHHHHHHHHHhcCCcccccccHhhCCCccCCCEEEEcCC
Confidence 88754 788899999886655432 1112333457778887
No 500
>PRK06851 hypothetical protein; Provisional
Probab=98.25 E-value=4e-05 Score=79.58 Aligned_cols=39 Identities=18% Similarity=0.115 Sum_probs=33.9
Q ss_pred EEEEeccCCCcHHHHHHHHHHHhcCCCcceeeecccccc
Q 005511 408 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFM 446 (693)
Q Consensus 408 ~iLl~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~ 446 (693)
.++|.|+||||||++.+.++..+...+.......|+-..
T Consensus 216 ~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~dP 254 (367)
T PRK06851 216 RYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCGFDP 254 (367)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 499999999999999999999987778888888887443
Done!