Query 005511
Match_columns 693
No_of_seqs 319 out of 3658
Neff 9.3
Searched_HMMs 29240
Date Tue Mar 26 18:25:49 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005511.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2018-2022//hhsearch_pdb/005511hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qvr_A CLPB protein; coiled co 1.0 1 1 592.6 65.7 648 17-676 145-847 (854)
2 3pxi_A Negative regulator of g 1.0 1 1 582.0 51.9 600 17-678 155-754 (758)
3 1r6b_X CLPA protein; AAA+, N-t 1.0 1 1 573.7 56.7 582 20-678 164-747 (758)
4 3cf2_A TER ATPase, transitiona 1.0 1 1 369.7 24.2 452 39-653 201-704 (806)
5 1ypw_A Transitional endoplasmi 1.0 1 1 304.8 11.2 421 35-599 197-662 (806)
6 3pxg_A Negative regulator of g 1.0 1 1 289.3 23.5 313 18-353 156-468 (468)
7 4fcw_A Chaperone protein CLPB; 1.0 1 1 269.0 34.6 305 362-677 3-307 (311)
8 3hws_A ATP-dependent CLP prote 1.0 1 1 223.8 14.5 285 367-669 6-341 (363)
9 4b4t_J 26S protease regulatory 1.0 1 1 215.0 24.2 200 39-265 145-370 (405)
10 1g41_A Heat shock protein HSLU 1.0 1 1 212.3 21.3 365 43-668 16-424 (444)
No 1
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=1.00 E-value=1 Score=592.57 Aligned_cols=648 Identities=60% Similarity=0.946 Sum_probs=561.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99999741888874366543209998766888999999999703999980788899971999999999997559999988
Q 005511 17 SSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTI 96 (693)
Q Consensus 17 ~~~~~~~~l~~~~~~l~~~~~~~~~~~ivG~~~~~~~l~~~l~~~~~~~ilL~GppGtGKT~la~~la~~l~~~~~~~~~ 96 (693)
.+....+.|++|+.+|+++++|.++++++|++..++.+.+.+.....++++|+||||||||++++++++.+.++.+|..+
T Consensus 145 ~~~~~~~~l~~~~~~l~~~~r~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l 224 (854)
T 1qvr_A 145 HAESTYNALEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGL 224 (854)
T ss_dssp CCCCCCSHHHHHEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTS
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHH
T ss_conf 44433045999978678777519975567869999999999835899822898599989999999999997607984331
Q ss_pred CCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 9966999865210139744661899999999999708-984999916003310899988476999883311079817999
Q 005511 97 EGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQS-DEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIG 175 (693)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~i~iI~ 175 (693)
.+.++++++++.+..+..+.|+++..++.++..+... .++||||||+|.+.+.+...+..+..+.|+++++.+.+.+|+
T Consensus 225 ~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~ 304 (854)
T 1qvr_A 225 KGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIG 304 (854)
T ss_dssp TTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTTCCCEEE
T ss_pred CCCEEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 59869996057753367643289999999999999669985999966787723678653199999999998279849999
Q ss_pred EECHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 74358898542039888546783115899999999999999996722037666858999999864441004677034666
Q 005511 176 ATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAID 255 (693)
Q Consensus 176 ~t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~a~~ 255 (693)
+||.+++.. +.+++++.+||+.+.|++|+.+++..|++.++.++...+++.++++++..++.++.+|+.++++|.++++
T Consensus 305 at~~~~~~~-~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~ 383 (854)
T 1qvr_A 305 ATTLDEYRE-IEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAID 383 (854)
T ss_dssp EECHHHHHH-HTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHH
T ss_pred ECCCHHHHH-HCCCHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 568267765-0368889827715771897999999999864666654268888889999999987522244558499999
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q ss_conf 9998756888841179378999999999999988797307436---88766688999999999998865466237-----
Q 005511 256 LIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDF---EKAGELRDREMDLKAQISALVDKGKEMSK----- 327 (693)
Q Consensus 256 ~l~~a~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~---~~~~~i~~~~~~l~~~~~~~~~~~~~~~~----- 327 (693)
+++.|++.++++....|..++.++..+..+..+.....+..+. +....+...+..+...+..+...|.....
T Consensus 384 lldea~a~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (854)
T 1qvr_A 384 LIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKL 463 (854)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999876136796569999999999999999998440323499999999999999999999999999999999999
Q ss_pred ------------------------------------------H----HHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC
Q ss_conf ------------------------------------------6----431299999659767999999873899667782
Q 005511 328 ------------------------------------------A----ETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVST 361 (693)
Q Consensus 328 ------------------------------------------~----~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~ 361 (693)
. ..........++.+++..+++.++++|...+..
T Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~v~~~~~ip~~~~~~ 543 (854)
T 1qvr_A 464 REAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFVRLEVTEEDIAEIVSRWTGIPVSKLLE 543 (854)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHHHHHHHSSSCSSCCSEECHHHHHHHHHTTSSCHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHCH
T ss_conf 99999999876558887752267778887652468899999998753112444557769999999999885988475367
Q ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 03578999999985252693899999999999975027899998438999515889279999999999639975405533
Q 005511 362 DESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLD 441 (693)
Q Consensus 362 ~~~~~~~~~~~~l~~~i~Gq~~~i~~l~~~i~~~~~~~~~~~~~~~~ill~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~ 441 (693)
.+...+..+.+.++..++||+.++..+...+...+.+...|.+|.+++||+||||||||++|+.+++.+++.+.+|+.++
T Consensus 544 ~~~~~l~~l~~~l~~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~ 623 (854)
T 1qvr_A 544 GEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID 623 (854)
T ss_dssp CHHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEEC
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 79999987998874116783889999999999996266778888507998799998799999999998448888579972
Q ss_pred CCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCEEECCCCCEEECCCEE
Q ss_conf 54322100011002899987676751226699980999899984674229889999999740564637999833169769
Q 005511 442 MSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTL 521 (693)
Q Consensus 442 ~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~g~~~~~~~~~~~~~~~i 521 (693)
|+++...+..+.++|.+++|+|+..++.+.+.++..+++||||||++++++.+++.|+++|++|.+++..++++++.+++
T Consensus 624 ~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~i 703 (854)
T 1qvr_A 624 MTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTV 703 (854)
T ss_dssp TTTCCSSGGGGGC--------------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEE
T ss_pred CHHCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEECCCCCEECCCCEE
T ss_conf 12103234788872899988673656559999983899089992510069999999999861580477998774257769
Q ss_pred EEEECCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 99953888256640665445556767431118999988999986017636860359478747899999999999999999
Q 005511 522 LIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEV 601 (693)
Q Consensus 522 ~I~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~r~~~~i~f~~l~~~~~~~i~~~~l~~~ 601 (693)
+|+|||.+...+.... ++ ...+..+...+.+.....|+|+|++||+.++.|.|++.+++..|+...+..+
T Consensus 704 iI~tsn~~~~~~~~~~---~~-------~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~ 773 (854)
T 1qvr_A 704 IILTSNLGSPLILEGL---QK-------GWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYL 773 (854)
T ss_dssp EEEECCTTHHHHHHHH---HT-------TCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHC---CC-------CCCHHHHHHHHHHHHHHHCCHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 9995686768786521---35-------6406999999999998608999997458377489979999999999999999
Q ss_pred HHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEE
Q ss_conf 999830998598398899999980449889960379999999899999998702027999899997399848998
Q 005511 602 FDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVTVL 676 (693)
Q Consensus 602 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 676 (693)
..++...++.+.++++++++|+.++|++.+|+|+|++.|++.+..++++.++.+.+.+|+++.|+++++ .+.+.
T Consensus 774 ~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~ 847 (854)
T 1qvr_A 774 RARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKEGDRVQVDVGPA-GLVFA 847 (854)
T ss_dssp HHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHHHHHTSSCSSCEEEEECCTT-SCEEE
T ss_pred HHHHHHCCCEEEECHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC-EEEEE
T ss_conf 999985796598889999999980989788817899999999999999999828678999899998799-89999
No 2
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=1.00 E-value=1 Score=581.96 Aligned_cols=600 Identities=61% Similarity=0.971 Sum_probs=540.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99999741888874366543209998766888999999999703999980788899971999999999997559999988
Q 005511 17 SSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTI 96 (693)
Q Consensus 17 ~~~~~~~~l~~~~~~l~~~~~~~~~~~ivG~~~~~~~l~~~l~~~~~~~ilL~GppGtGKT~la~~la~~l~~~~~~~~~ 96 (693)
.+.+..+.|+.|+.+|+++++++.+++++|++.+++.+...+.....+|+||+||||||||++|+++|+.+.++.+|..+
T Consensus 155 ~~~~~~~~l~~~~~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l 234 (758)
T 3pxi_A 155 NSNANTPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEIL 234 (758)
T ss_dssp CCSTHHHHHHSSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHH
T ss_conf 65102668999999999988618988764866999999999847788975898999989999999999997527897232
Q ss_pred CCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 99669998652101397446618999999999997089849999160033108999884769998833110798179997
Q 005511 97 EGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGA 176 (693)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~i~iI~~ 176 (693)
.+..++.+++ +..+.|+++..++.++..+....++||||| +..+.++.|++.++.+.+.+|++
T Consensus 235 ~~~~~~~~~~-----g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD------------~~~~~~~~L~~~l~~~~v~~I~a 297 (758)
T 3pxi_A 235 RDKRVMTLDM-----GTKYRGEFEDRLKKVMDEIRQAGNIILFID------------AAIDASNILKPSLARGELQCIGA 297 (758)
T ss_dssp SSCCEECC---------------CTTHHHHHHHHHTCCCCEEEEC------------C--------CCCTTSSSCEEEEE
T ss_pred CCCEEEEECC-----CCCCCCHHHHHHHHHHHHHHHCCCEEEEEC------------CCHHHHHHHHHHHHCCCEEEEEC
T ss_conf 4886999516-----644354589999999999985599799986------------86659998899986598799967
Q ss_pred ECHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 43588985420398885467831158999999999999999967220376668589999998644410046770346669
Q 005511 177 TTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDL 256 (693)
Q Consensus 177 t~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~a~~~ 256 (693)
||..++...+.+++++.+||..+.|+.|+.+++..|++.+..++...+++.++++++..++.++.+|+.++++|+.++++
T Consensus 298 t~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~l 377 (758)
T 3pxi_A 298 TTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDL 377 (758)
T ss_dssp CCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHH
T ss_pred CCHHHHHHHHHCCHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHH
T ss_conf 88388888762459999628478838999999999999999999986299878799999999754005667697179999
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99875688884117937899999999999998879730743688766688999999999998865466237643129999
Q 005511 257 IDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVG 336 (693)
Q Consensus 257 l~~a~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (693)
++.|++.+.++....|..++.++..+..+..+.....+..+|+.+..+......+...+......|..... ...
T Consensus 378 l~~a~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~------~~~ 451 (758)
T 3pxi_A 378 IDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQG------QEN 451 (758)
T ss_dssp HHHHHHHHHHHTTC--CCTHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHSGGGHHHH------CC-
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCC
T ss_conf 99998999862247995046689999999999999884747999999999999999999999999987541------367
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCC
Q ss_conf 96597679999998738996677820357899999998525269389999999999997502789999843899951588
Q 005511 337 PVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTG 416 (693)
Q Consensus 337 ~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~Gq~~~i~~l~~~i~~~~~~~~~~~~~~~~ill~Gp~G 416 (693)
..++.+++..+++.++++|+..+...+...+..+...+...++||+.+++.+...+...+.+...|.+|.+++||+||||
T Consensus 452 ~~v~~~~i~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~G 531 (758)
T 3pxi_A 452 SEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTG 531 (758)
T ss_dssp --CCTHHHHHHHHTTC-------CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTT
T ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCC
T ss_conf 61179999999998858985876177999999999998386817399999999999999704678899834999988999
Q ss_pred CCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCHHHHH
Q ss_conf 92799999999996399754055335432210001100289998767675122669998099989998467422988999
Q 005511 417 VGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFN 496 (693)
Q Consensus 417 tGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~ 496 (693)
||||++|+++|+.+++.+.+|+.++|+++......+ ++.+++.++..+++||||||+|++++.+++
T Consensus 532 tGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~--------------~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~ 597 (758)
T 3pxi_A 532 VGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS--------------GGQLTEKVRRKPYSVVLLDAIEKAHPDVFN 597 (758)
T ss_dssp SSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-----------------CHHHHHHCSSSEEEEECGGGSCHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCCEEEEECHHCCCCCCCC--------------CCHHHHHHHHCCCEEEEEECCCCCCHHHHH
T ss_conf 879999999999855997666997120026643445--------------641459999499839999571005999999
Q ss_pred HHHHHHHCCEEECCCCCEEECCCEEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCC
Q ss_conf 99997405646379998331697699995388825664066544555676743111899998899998601763686035
Q 005511 497 MMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRL 576 (693)
Q Consensus 497 ~Ll~~le~g~~~~~~~~~~~~~~~i~I~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~r~ 576 (693)
.|+++|++|.+++..|+.+++.++++|+|||.+... .......+.+.|+|+|++||
T Consensus 598 ~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~------------------------~~~~~~~~~~~f~p~l~~Rl 653 (758)
T 3pxi_A 598 ILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASE------------------------KDKVMGELKRAFRPEFINRI 653 (758)
T ss_dssp HHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTC------------------------CHHHHHHHHHHSCHHHHTTS
T ss_pred HHHHHHCCCEEECCCCCEECCCCEEEEEECCCCHHH------------------------HHHHHHHHHHHCCHHHHHHC
T ss_conf 999985467687589978436776999937887133------------------------79999999962899999447
Q ss_pred CCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 94787478999999999999999999998309985983988999999804498899603799999998999999987020
Q 005511 577 DEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLARE 656 (693)
Q Consensus 577 ~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~~~l~~~~~~~~ 656 (693)
+.++.|+||+.+++..|+...+..+..++...+..+.++++++++|++.+|+|.+|+|+|++.|++.+..++++.++.+.
T Consensus 654 ~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~~l~~~~l~~~ 733 (758)
T 3pxi_A 654 DEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRGN 733 (758)
T ss_dssp SEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTHHHHHHHHHTTC
T ss_pred CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 85996599799999999999999999999967995997999999999828997789707999999999999999998087
Q ss_pred CCCCCEEEEEECCCCCEEEEEC
Q ss_conf 2799989999739984899838
Q 005511 657 IKEGDSVIVDVDSDGNVTVLNG 678 (693)
Q Consensus 657 ~~~~~~~~i~~~~~~~~~~~~~ 678 (693)
+.+|+++.|+++++ .+.+...
T Consensus 734 ~~~~~~~~~~~~~~-~~~~~~~ 754 (758)
T 3pxi_A 734 IHKGQHIVLDVEDG-EFVVKTT 754 (758)
T ss_dssp SCSSSEEEEEESSS-SEEEEEC
T ss_pred CCCCCEEEEEEECC-EEEEEEE
T ss_conf 89999899998899-8999970
No 3
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=1.00 E-value=1 Score=573.74 Aligned_cols=582 Identities=46% Similarity=0.802 Sum_probs=521.4
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99741888874366543209998766888999999999703999980788899971999999999997559999988996
Q 005511 20 NKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGK 99 (693)
Q Consensus 20 ~~~~~l~~~~~~l~~~~~~~~~~~ivG~~~~~~~l~~~l~~~~~~~ilL~GppGtGKT~la~~la~~l~~~~~~~~~~~~ 99 (693)
+..+.|++|+.+|++++++..+++++|++.+++.+.+.+.....++++|+||||||||++++++++.+.+..+|..+.+.
T Consensus 164 ~~~~~l~~~~~~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~ 243 (758)
T 1r6b_X 164 GGEERLENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADC 243 (758)
T ss_dssp -----CCSSSCBHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTC
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHCCC
T ss_conf 43137999867579998549998766879999999999854678880798499998999999999999737998454388
Q ss_pred EEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHCCCCC-CHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 699986521013974466189999999999970898499991600331089998-8476999883311079817999743
Q 005511 100 KVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAE-GAIDAANILKPSLARGELQCIGATT 178 (693)
Q Consensus 100 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~iL~iDEid~l~~~~~~~-~~~~~~~~L~~~l~~~~i~iI~~t~ 178 (693)
.++.++++.+..+..+.|.++..++.++..+....+++|||||+|.+.+.+... +..+..+.|+++++.+.+.+|++|+
T Consensus 244 ~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~ 323 (758)
T 1r6b_X 244 TIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTT 323 (758)
T ss_dssp EEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEEC
T ss_pred EEEEECHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 79997578874365545269999999999999669849999566888516787766088999999998579869999847
Q ss_pred HHHHHHHHHCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 58898542039888546783115899999999999999996722037666858999999864441004677034666999
Q 005511 179 LDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLID 258 (693)
Q Consensus 179 ~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~a~~~l~ 258 (693)
.+++...+..++++.+||..+.|+.|+.+++.+|++.+...+...+++.++++++..++.++.+|+.++++|..++++++
T Consensus 324 ~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld 403 (758)
T 1r6b_X 324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVID 403 (758)
T ss_dssp HHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHH
T ss_pred CHHHHHHHHCCHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 46775555429898847668882798989999999999999987338987999999999986553215458507889999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 87568888411793789999999999999887973074368876668899999999999886546623764312999996
Q 005511 259 EAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPV 338 (693)
Q Consensus 259 ~a~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (693)
.|++...+.... .....
T Consensus 404 ~a~~~~~~~~~~---------------------------------------------------------------~~~~~ 420 (758)
T 1r6b_X 404 EAGARARLMPVS---------------------------------------------------------------KRKKT 420 (758)
T ss_dssp HHHHHHHHSSSC---------------------------------------------------------------CCCCS
T ss_pred HHHHHHHCCCCC---------------------------------------------------------------CCCCC
T ss_conf 999997426311---------------------------------------------------------------36885
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCC
Q ss_conf 59767999999873899667782035789999999852526938999999999999750278999984389995158892
Q 005511 339 VTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVG 418 (693)
Q Consensus 339 v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~Gq~~~i~~l~~~i~~~~~~~~~~~~~~~~ill~Gp~GtG 418 (693)
++.+++..+++.++++|+..+.+++...+..+.+.+...++||+.+++.+..++...+.++..+.+|.+++||+||||||
T Consensus 421 v~~~di~~~~~~~~~ip~~~~~~~~~~~l~~l~~~l~~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtG 500 (758)
T 1r6b_X 421 VNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVG 500 (758)
T ss_dssp CCHHHHHHHHHHHSCCCCCCSSSSHHHHHHHHHHHHTTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSS
T ss_pred CCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCC
T ss_conf 48999999998750899644556589999999999986506789999999999999964467788876589987899976
Q ss_pred HHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCHHHHHHH
Q ss_conf 79999999999639975405533543221000110028999876767512266999809998999846742298899999
Q 005511 419 KSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMM 498 (693)
Q Consensus 419 Kt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~L 498 (693)
||++|+.+|+.+ +.+|+.++|+++...++.+.++|.+++|+|+.+++.+.+.++.++++||||||+|++++.+++.|
T Consensus 501 KT~la~~la~~l---~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~L 577 (758)
T 1r6b_X 501 KTEVTVQLSKAL---GIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNIL 577 (758)
T ss_dssp HHHHHHHHHHHH---TCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHH---CCCEEEEECHHHCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHH
T ss_conf 999999999984---57779986145210445766438998776756552489999957994899908210398999999
Q ss_pred HHHHHCCEEECCCCCEEECCCEEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCC
Q ss_conf 99740564637999833169769999538882566406654455567674311189999889999860176368603594
Q 005511 499 LQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDE 578 (693)
Q Consensus 499 l~~le~g~~~~~~~~~~~~~~~i~I~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~r~~~ 578 (693)
+++|++|.+++..|+.+++.++++|+|||.+...+... .+||..... ...+.+++.+.|+|+|++||+.
T Consensus 578 l~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~--~~g~~~~~~---------~~~~~~~~~~~~~~~l~~R~~~ 646 (758)
T 1r6b_X 578 LQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERK--SIGLIHQDN---------STDAMEEIKKIFTPEFRNRLDN 646 (758)
T ss_dssp HHHHHHSEEEETTTEEEECTTEEEEEEECSSCC----------------------------CHHHHHHHSCHHHHTTCSE
T ss_pred HHHHCCCEEECCCCCEEECCCEEEEEECCCCHHHHHHC--CCCCCCCCH---------HHHHHHHHHHHCCHHHHHHCCC
T ss_conf 99864757982899777258738998247552444322--467654106---------7889999987559999963784
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 78747899999999999999999999830998598398899999980449889960379999999899999998702027
Q 005511 579 MIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIK 658 (693)
Q Consensus 579 ~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~~~l~~~~~~~~~~ 658 (693)
++.|+||+.+++..|+...+..+..++...++.+.++++++++|++.+|++++|+|+|++.+++.+..++++.++.+.+.
T Consensus 647 ~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~~~l~~~~~ 726 (758)
T 1r6b_X 647 IIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLV 726 (758)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHHHHHHSTTT
T ss_pred CEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 04647999999999999999999999997893899689999999980889678965899999999899999999718678
Q ss_pred CCCEEEEEECCC-CCEEEEEC
Q ss_conf 999899997399-84899838
Q 005511 659 EGDSVIVDVDSD-GNVTVLNG 678 (693)
Q Consensus 659 ~~~~~~i~~~~~-~~~~~~~~ 678 (693)
.|.++.|+++++ +.+.+...
T Consensus 727 ~~~~~~~~~~~~~~~~~~~~~ 747 (758)
T 1r6b_X 727 DGGQVTVALDKEKNELTYGFQ 747 (758)
T ss_dssp TCEEEEEEEEGGGTEEEEEEE
T ss_pred CCCEEEEEEECCCEEEEEEEC
T ss_conf 999899999689416999971
No 4
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=369.66 Aligned_cols=452 Identities=22% Similarity=0.293 Sum_probs=321.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHH-------------CCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEE
Q ss_conf 999876688899999999970-------------3999980788899971999999999997559999988996699986
Q 005511 39 GKLDPVVGRQPQIERVVQILG-------------RRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLD 105 (693)
Q Consensus 39 ~~~~~ivG~~~~~~~l~~~l~-------------~~~~~~ilL~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 105 (693)
-+++++.|.+++++.|.+.+. ..++.++|||||||||||++|+++|+++ +..++.++
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el----------g~~~~~v~ 270 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFFLIN 270 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT----------TCEEEEEE
T ss_pred CCHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH----------CCEEEEEE
T ss_conf 99035149999999999999987519898863589999758977989998899999999971----------98399997
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHCCCCCC---HHHHHHHHHHHHC----CCCCEEEEEEC
Q ss_conf 5210139744661899999999999708984999916003310899988---4769998833110----79817999743
Q 005511 106 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEG---AIDAANILKPSLA----RGELQCIGATT 178 (693)
Q Consensus 106 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~iL~iDEid~l~~~~~~~~---~~~~~~~L~~~l~----~~~i~iI~~t~ 178 (693)
++++. .++.|+.+..++.+|..++...|+||||||+|.+++.+.... .....+.|+..++ .+.+++|++||
T Consensus 271 ~~~l~--sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN 348 (806)
T 3cf2_A 271 GPEIM--SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATN 348 (806)
T ss_dssp HHHHH--SSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECS
T ss_pred HHHHH--CCCCHHHHHHHHHHHHHHHHCCCEEEEEEHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECC
T ss_conf 37954--3331678999999999999729929998510023344577887399999999999974666669879999669
Q ss_pred HHHHHHHHHCCHHHHC--CCC-CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 5889854203988854--678-3115899999999999999996722037666858999999864441004677034666
Q 005511 179 LDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAID 255 (693)
Q Consensus 179 ~~~~~~~~~l~~~l~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~a~~ 255 (693)
.++ .+|+++++ ||+ .|+++.|+.++|.+||+.+++.... -.+..+..++..+.+|.+ .+...
T Consensus 349 ~~d-----~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~-----~~dvdl~~lA~~T~Gfsg-----aDL~~ 413 (806)
T 3cf2_A 349 RPN-----SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-----ADDVDLEQVANETHGHVG-----ADLAA 413 (806)
T ss_dssp STT-----TSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEE-----CTTCCHHHHHHHCCSCCH-----HHHHH
T ss_pred CHH-----HCCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCC-----CCCCCHHHHHHHCCCCCH-----HHHHH
T ss_conf 803-----269888578636168866897989999999998568998-----864389999975689989-----99999
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99987568888411793789999999999999887973074368876668899999999999886546623764312999
Q 005511 256 LIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDV 335 (693)
Q Consensus 256 ~l~~a~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 335 (693)
++.+|+..+..+...... ..+.....+ . . .
T Consensus 414 Lv~eA~~~A~~r~~~~i~---------------------~~~~~~~~e---~-------------------~-------~ 443 (806)
T 3cf2_A 414 LCSEAALQAIRKKMDLID---------------------LEDETIDAE---V-------------------M-------N 443 (806)
T ss_dssp HHHHHHHHHHHHHHHHGG---------------------GTCCCCSHH---H-------------------H-------H
T ss_pred HHHHHHHHHHHHCCCCCC---------------------CCCCCCCHH---H-------------------H-------C
T ss_conf 999999999984145120---------------------001332045---5-------------------2-------2
Q ss_pred CCCCCHHHHHHHHHHHHC-------CCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH----CCCCCCC
Q ss_conf 996597679999998738-------99667782035789999999852526938999999999999750----2789999
Q 005511 336 GPVVTEVDIQHIVSAWTG-------IPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARV----GLKNPNR 404 (693)
Q Consensus 336 ~~~v~~~~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~i~Gq~~~i~~l~~~i~~~~~----~~~~~~~ 404 (693)
...++.+++..++..... .....+.| ..+.|.+++++.+.+.+..... .......
T Consensus 444 ~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w--------------~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~ 509 (806)
T 3cf2_A 444 SLAVTMDDFRWALSQSNPSALRETVVEVPQVTW--------------EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMT 509 (806)
T ss_dssp HCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCS--------------TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCC
T ss_pred CCEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCH--------------HHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCC
T ss_conf 556519999999972878311234445788788--------------881788999999999997566689999714888
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCC--CHHHHHHHCCCCEEE
Q ss_conf 843899951588927999999999963997540553354322100011002899987676751--226699980999899
Q 005511 405 PIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVV 482 (693)
Q Consensus 405 ~~~~ill~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl 482 (693)
|..++||+||||||||++|+++|..+ +.+|+.++.+++.. .|+|+++. +.++..+++..++||
T Consensus 510 ~~~gvLl~GPPGtGKT~lAkaiA~e~---~~~f~~v~~~~l~s------------~~vGese~~vr~lF~~Ar~~~P~Ii 574 (806)
T 3cf2_A 510 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLT------------MWFGESEANVREIFDKARQAAPCVL 574 (806)
T ss_dssp CCSCCEEESSTTSSHHHHHHHHHHTT---TCEEEECCHHHHHT------------TTCSSCHHHHHHHHHHHHTTCSEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHH---CCCEEEECCCHHHC------------CCCCHHHHHHHHHHHHHHHCCCCEE
T ss_conf 88607986687789639999999983---89668742411210------------3343689999999999997299635
Q ss_pred EECCCCCCCH--------------HHHHHHHHHHHCCEEECCCCCEEECCCEEEEEECCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf 9846742298--------------89999999740564637999833169769999538882566406654455567674
Q 005511 483 LFDEIEKAHP--------------DVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDE 548 (693)
Q Consensus 483 ~iDEid~l~~--------------~~~~~Ll~~le~g~~~~~~~~~~~~~~~i~I~tsn~~~~~i~~~~~~~~~~~~~~~ 548 (693)
||||+|.+.+ .+.+.||..|+.-. ...++++|++||.+..
T Consensus 575 fiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~---------~~~~V~vi~aTN~p~~----------------- 628 (806)
T 3cf2_A 575 FFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS---------TKKNVFIIGATNRPDI----------------- 628 (806)
T ss_dssp ECSCGGGCC--------------CHHHHHHHHHHHSSC---------SSSSEEEECC-CCSSS-----------------
T ss_pred ECHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCC---------CCCCEEEEEECCCCHH-----------------
T ss_conf 20425677631588888986699999999999974878---------7799899993798043-----------------
Q ss_pred CCCHHHHHHHHHHHHHHHCCCHHHHH--CCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHC
Q ss_conf 31118999988999986017636860--3594787478999999999999999999998309985983988999999804
Q 005511 549 KDSSYNRIKSLVTEELKQYFRPEFLN--RLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQVTERFRERVVEEG 626 (693)
Q Consensus 549 ~~~~~~~l~~~~~~~~~~~~~~~l~~--r~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 626 (693)
+++++++ ||+..+.|++++.++..+|++..+.. ..+.-+. -+..|++
T Consensus 629 -------------------lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~---------~~~~~~~-dl~~la~-- 677 (806)
T 3cf2_A 629 -------------------IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK---------SPVAKDV-DLEFLAK-- 677 (806)
T ss_dssp -------------------SCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSC---------C--CCC-----------
T ss_pred -------------------CCHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHCC---------CCCCCCC-CHHHHHH--
T ss_conf -------------------89847177855079997996999999999998567---------9998778-9999997--
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 498899603799999998999999987
Q 005511 627 YNPSYGARPLRRAIMRLLEDSMAEKML 653 (693)
Q Consensus 627 ~~~~~g~r~l~~~i~~~i~~~l~~~~~ 653 (693)
....+...+|...++.....++-+.+.
T Consensus 678 ~t~g~SGadi~~l~~~A~~~a~r~~~~ 704 (806)
T 3cf2_A 678 MTNGFSGADLTEICQRACKLAIRESIE 704 (806)
T ss_dssp --------CHHHHHHHHHHHHHHHHHC
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 689999999999999999999999998
No 5
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=1.00 E-value=1 Score=304.76 Aligned_cols=421 Identities=23% Similarity=0.318 Sum_probs=283.6
Q ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHC-------------CCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEE
Q ss_conf 43209998766888999999999703-------------99998078889997199999999999755999998899669
Q 005511 35 LAEEGKLDPVVGRQPQIERVVQILGR-------------RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKV 101 (693)
Q Consensus 35 ~~~~~~~~~ivG~~~~~~~l~~~l~~-------------~~~~~ilL~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~ 101 (693)
...+-++++++|++.+++.+.+++.. .++.+++|+||||||||+++++++..+ +..+
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l----------~~~~ 266 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFF 266 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT----------TCEE
T ss_pred CCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHC----------CCCE
T ss_conf 357899888288099999999999987429899986388999738998939998799999999971----------9968
Q ss_pred EEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHCCCCCC---HHHHHHHHHHHHC----CCCCEEE
Q ss_conf 99865210139744661899999999999708984999916003310899988---4769998833110----7981799
Q 005511 102 ITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEG---AIDAANILKPSLA----RGELQCI 174 (693)
Q Consensus 102 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~iL~iDEid~l~~~~~~~~---~~~~~~~L~~~l~----~~~i~iI 174 (693)
+.+++..+. ..+.+.....+..+|..+....++++|+||+|.+.+.+.... .....+.|+..++ ...+.+|
T Consensus 267 i~v~~~~l~--~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI 344 (806)
T 1ypw_A 267 FLINGPEIM--SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVM 344 (806)
T ss_dssp EEEEHHHHS--SSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEE
T ss_pred EEEECHHHH--HHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 999755765--441015899999999999864995798300777511146663168899999999986541146617876
Q ss_pred EEECHHHHHHHHHCCHHHHC--CCC-CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 97435889854203988854--678-311589999999999999999672203766685899999986444100467703
Q 005511 175 GATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPD 251 (693)
Q Consensus 175 ~~t~~~~~~~~~~l~~~l~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 251 (693)
++||.+. .+++++++ ||. .+.++.|+.+++.+|++.++.++.. ..+..+..++..+.++.+ .
T Consensus 345 ~atn~~~-----~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l-----~~~~~l~~la~~t~g~~g-----~ 409 (806)
T 1ypw_A 345 AATNRPN-----SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-----ADDVDLEQVANETHGHVG-----A 409 (806)
T ss_dssp EECSCTT-----TSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCC-----CTTCCTHHHHHSCSSCCH-----H
T ss_pred CCCCCCH-----HCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC-----CCCCHHHHHHHHHCCCCH-----H
T ss_conf 0239810-----049998646554443556999999999999998733877-----622006777776147536-----8
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 46669998756888841179378999999999999988797307436887666889999999999988654662376431
Q 005511 252 KAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETE 331 (693)
Q Consensus 252 ~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~ 331 (693)
....++..+...+..+...... ...... . .. .
T Consensus 410 dl~~l~~ea~~~a~r~~~~~i~------------------------~~~~~~----------------~------~~--~ 441 (806)
T 1ypw_A 410 DLAALCSEAALQAIRKKMDLID------------------------LEDETI----------------D------AE--V 441 (806)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTS------------------------CHHHHC----------------C------HH--H
T ss_pred HHHHHHHHHHHHHHHHHCCCCC------------------------HHHHCC----------------C------HH--H
T ss_conf 9999999999998764201011------------------------554201----------------0------12--4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC----CCCCCCCCE
Q ss_conf 2999996597679999998738996677820357899999998525269389999999999997502----789999843
Q 005511 332 AGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVG----LKNPNRPIA 407 (693)
Q Consensus 332 ~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~Gq~~~i~~l~~~i~~~~~~----~~~~~~~~~ 407 (693)
.....++.+++...+........... ........+.++.|++.+++.+...+...... ......+..
T Consensus 442 --~~~~~v~~~d~~~al~~~~~s~~~~~-------~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~ 512 (806)
T 1ypw_A 442 --MNSLAVTMDDFRWALSQSNPSALRET-------VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSK 512 (806)
T ss_dssp --HTTCCCCTTHHHHHHHHSCCCCCCCC-------CCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCC
T ss_pred --HHHHHHHHHHHHCCCCCCCCHHHHHH-------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHCCCCCCC
T ss_conf --44555556653111123571444200-------025754211112443022221899997555363989754888775
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCC--CHHHHHHHCCCCEEEEEC
Q ss_conf 899951588927999999999963997540553354322100011002899987676751--226699980999899984
Q 005511 408 SFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEG--GQLTEAVRRRPYTVVLFD 485 (693)
Q Consensus 408 ~ill~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iD 485 (693)
++||+||||||||++|+++|..+ +.+++.++++++.. .|+|..+. ..++..++...++|+|||
T Consensus 513 ~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~------------~~~g~~~~~i~~~f~~a~~~~p~vl~iD 577 (806)
T 1ypw_A 513 GVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLT------------MWFGESEANVREIFDKARQAAPCVLFFD 577 (806)
T ss_dssp CCCCBCCTTSSHHHHHHHHHHHH---TCCCCCCCCSSSTT------------CCTTTSSHHHHHHHHHHHHHCSBCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECHHHHH------------HHCCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 36897799987899999999984---89879986167655------------3057547889999999870698599998
Q ss_pred CCCCCC--------------HHHHHHHHHHHHCCEEECCCCCEEECCCEEEEEECCCCHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 674229--------------889999999740564637999833169769999538882566406654455567674311
Q 005511 486 EIEKAH--------------PDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDS 551 (693)
Q Consensus 486 Eid~l~--------------~~~~~~Ll~~le~g~~~~~~~~~~~~~~~i~I~tsn~~~~~i~~~~~~~~~~~~~~~~~~ 551 (693)
|+|++. ..+++.|+..|+... ...++++|+|||....
T Consensus 578 Eid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~---------~~~~v~vI~tTN~~~~-------------------- 628 (806)
T 1ypw_A 578 ELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS---------TKKNVFIIGATNRPDI-------------------- 628 (806)
T ss_dssp SHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC---------------CCBCCCCCBSCGG--------------------
T ss_pred CHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCC---------CCCCEEEEEECCCCCC--------------------
T ss_conf 74454211268777764168999999999875456---------6687699984387122--------------------
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHH--CCCCEEECCCCCHHHHHHHHHHHHH
Q ss_conf 18999988999986017636860--3594787478999999999999999
Q 005511 552 SYNRIKSLVTEELKQYFRPEFLN--RLDEMIVFRQLTKLEVKEIADIMLK 599 (693)
Q Consensus 552 ~~~~l~~~~~~~~~~~~~~~l~~--r~~~~i~f~~l~~~~~~~i~~~~l~ 599 (693)
+++++++ ||+..+.|++++.++..+|++..+.
T Consensus 629 ----------------ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~ 662 (806)
T 1ypw_A 629 ----------------IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR 662 (806)
T ss_dssp ----------------GSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTS
T ss_pred ----------------CCHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHC
T ss_conf ----------------7987837655673055599799999999999864
No 6
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=1.00 E-value=1 Score=289.34 Aligned_cols=313 Identities=63% Similarity=0.976 Sum_probs=284.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99997418888743665432099987668889999999997039999807888999719999999999975599999889
Q 005511 18 SGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIE 97 (693)
Q Consensus 18 ~~~~~~~l~~~~~~l~~~~~~~~~~~ivG~~~~~~~l~~~l~~~~~~~ilL~GppGtGKT~la~~la~~l~~~~~~~~~~ 97 (693)
+.++.+.|..|+.+|+++++|+++++++|++.+++.+...+.....+|+||+||||||||++|+++++.+.++.+|..+.
T Consensus 156 ~~~~~~~l~~~~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~ 235 (468)
T 3pxg_A 156 SNANTPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILR 235 (468)
T ss_dssp CSTHHHHHHSSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTS
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHC
T ss_conf 76675579999998998986499887668499999999998256778737878999889999999999987179976654
Q ss_pred CCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 96699986521013974466189999999999970898499991600331089998847699988331107981799974
Q 005511 98 GKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLARGELQCIGAT 177 (693)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~i~iI~~t 177 (693)
+.+++.++++ ..+.|.++..++.++..+....++||||| +..+.++.|++.++.+.+.+|++|
T Consensus 236 ~~~~~~l~~~-----~~~~g~~e~~~~~~~~~~~~~~~~iLfiD------------~~~~a~~~L~~~L~~g~v~vI~at 298 (468)
T 3pxg_A 236 DKRVMTLDMG-----TKYRGEFEDRLKKVMDEIRQAGNIILFID------------AAIDASNILKPSLARGELQCIGAT 298 (468)
T ss_dssp SCCEECC---------------CTTHHHHHHHHHTCCCCEEEEC------------C--------CCCTTSSSCEEEEEC
T ss_pred CCEEEEEECC-----CCCCCHHHHHHHHHHHHHHHCCCEEEEEE------------CCHHHHHHHHHHHCCCCEEEEECC
T ss_conf 9848996177-----66562689999999999995699699981------------861599998776507987999618
Q ss_pred CHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 35889854203988854678311589999999999999999672203766685899999986444100467703466699
Q 005511 178 TLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLI 257 (693)
Q Consensus 178 ~~~~~~~~~~l~~~l~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~a~~~l 257 (693)
|..++...+.+++++.+||..+.|+.|+.+++..|++.++.++...+++.++++++..++.++.+|+.++++|+++++++
T Consensus 299 ~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll 378 (468)
T 3pxg_A 299 TLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLI 378 (468)
T ss_dssp CTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHH
T ss_pred CHHHHHHHHHCCHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 87999887624799997575465389899999999999999999854999799999999999887752676983799999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 98756888841179378999999999999988797307436887666889999999999988654662376431299999
Q 005511 258 DEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGP 337 (693)
Q Consensus 258 ~~a~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (693)
+.+++.++++....|.+++.++..+..+..+...++...||+.+..++.....++..+......|.+..... ..
T Consensus 379 ~~a~~~~~~~~~~~p~~i~~l~~~i~~l~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 452 (468)
T 3pxg_A 379 DEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQE------NS 452 (468)
T ss_dssp HHHHHHHHHHTTSCCSSTHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHSGGGHHHHHH------TT
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------CC
T ss_conf 999999974067991679999999999999999987186799999999999999999999999998614578------88
Q ss_pred CCCHHHHHHHHHHHHC
Q ss_conf 6597679999998738
Q 005511 338 VVTEVDIQHIVSAWTG 353 (693)
Q Consensus 338 ~v~~~~~~~~l~~~~~ 353 (693)
.++.+++..+++.|+|
T Consensus 453 ~~~~~~~~~~~~~~~~ 468 (468)
T 3pxg_A 453 EVTVDDIAMVVSSWTG 468 (468)
T ss_dssp CCCTHHHHHHHHTTC-
T ss_pred CCCHHHHHHHHHHHHC
T ss_conf 2089999999998739
No 7
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=1.00 E-value=1 Score=269.01 Aligned_cols=305 Identities=61% Similarity=1.008 Sum_probs=268.1
Q ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 03578999999985252693899999999999975027899998438999515889279999999999639975405533
Q 005511 362 DESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLD 441 (693)
Q Consensus 362 ~~~~~~~~~~~~l~~~i~Gq~~~i~~l~~~i~~~~~~~~~~~~~~~~ill~Gp~GtGKt~lA~~la~~l~~~~~~~~~~~ 441 (693)
.+.+.+..+.+.+.+.++||+.+++.+...+.....++..+.+|..+++|+||||||||++|+.++..+...+.+++.++
T Consensus 3 ~~~~~l~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~ 82 (311)
T 4fcw_A 3 GEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID 82 (311)
T ss_dssp HHHHHHHTHHHHHHTTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEE
T ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 47789999999996252898999999999999986577888998628999899995799999999999738876348960
Q ss_pred CCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCEEECCCCCEEECCCEE
Q ss_conf 54322100011002899987676751226699980999899984674229889999999740564637999833169769
Q 005511 442 MSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTL 521 (693)
Q Consensus 442 ~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~l~~~~~~~Ll~~le~g~~~~~~~~~~~~~~~i 521 (693)
|+.+........++|.+.++.|....+.+.+.+..++++|+||||+|++++.+++.|++.++++.+.+..+..+++.+++
T Consensus 83 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i 162 (311)
T 4fcw_A 83 MTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTV 162 (311)
T ss_dssp GGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEE
T ss_pred CCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCE
T ss_conf 65546632288726999865560455068999985998199995734339899999999984597976999778777758
Q ss_pred EEEECCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 99953888256640665445556767431118999988999986017636860359478747899999999999999999
Q 005511 522 LIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEV 601 (693)
Q Consensus 522 ~I~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~r~~~~i~f~~l~~~~~~~i~~~~l~~~ 601 (693)
+|+|||.+...+...... ...+..+...+...+...|+++|++||+.++.|.|++.+++..|++..+..+
T Consensus 163 iI~ttn~~~~~i~~~~~~----------~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~ 232 (311)
T 4fcw_A 163 IIMTSNLGSPLILEGLQK----------GWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYL 232 (311)
T ss_dssp EEEEESTTHHHHHTTTTS----------CCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHH
T ss_pred EEEECCCCHHHHHHHHCC----------CCCHHHHHHHHHHHHHHHCCHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 999246687999754314----------6648999999999998758998982478599807899999999999999999
Q ss_pred HHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEE
Q ss_conf 9998309985983988999999804498899603799999998999999987020279998999973998489983
Q 005511 602 FDRLKTKDIELQVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVTVLN 677 (693)
Q Consensus 602 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~l~~~i~~~i~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 677 (693)
...+...+..+.++++++++|.+.+|++..|+|+|++.+++.+..++++.++.+++++++++.|+++++ ++++..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~~~~~~~~~~i~i~~~~~-~~~~~~ 307 (311)
T 4fcw_A 233 RARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKEGDRVQVDVGPA-GLVFAV 307 (311)
T ss_dssp HHHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHHHHTSSCTTCEEEEEECSS-SEEEEC
T ss_pred HHHHHHCCCEEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC-EEEEEE
T ss_conf 999996896797199999999983778567853079999999999999999827899998899999789-489994
No 8
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=1.00 E-value=1 Score=223.82 Aligned_cols=285 Identities=24% Similarity=0.381 Sum_probs=198.4
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC----C--CCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 999999985252693899999999999975027----8--9999843899951588927999999999963997540553
Q 005511 367 LLKMEETLHKRVIGQDEAVKAISRAIRRARVGL----K--NPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRL 440 (693)
Q Consensus 367 ~~~~~~~l~~~i~Gq~~~i~~l~~~i~~~~~~~----~--~~~~~~~~ill~Gp~GtGKt~lA~~la~~l~~~~~~~~~~ 440 (693)
...+.+.+.+.++||+.+++.+..++....... . ....+..++||+||||||||++|+++|+.+ +.+|+.+
T Consensus 6 ~~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~---~~~~~~~ 82 (363)
T 3hws_A 6 PHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL---DVPFTMA 82 (363)
T ss_dssp HHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEE
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHC---CCCEEEE
T ss_conf 9999999874603889999999999999986520011123456799818998999988999999999982---9988981
Q ss_pred CCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHH-------CCCCEEEEECCCCCCCHH--------------HHHHHH
Q ss_conf 35432210001100289998767675122669998-------099989998467422988--------------999999
Q 005511 441 DMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVR-------RRPYTVVLFDEIEKAHPD--------------VFNMML 499 (693)
Q Consensus 441 ~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~-------~~~~~vl~iDEid~l~~~--------------~~~~Ll 499 (693)
+|+.+.. .+|.|....+.+...+. .+.++||||||+|++++. +++.|+
T Consensus 83 ~~~~l~~-----------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll 151 (363)
T 3hws_A 83 DATTLTE-----------AGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALL 151 (363)
T ss_dssp EHHHHTT-----------CHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHH
T ss_pred CHHHHCC-----------CCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 4677313-----------32246427789999999743568736996899968666350335653343213289999999
Q ss_pred HHHHCCEE---ECCCCC--------EEECCCEEEEEECCC-CHHHHHH----CCCCCCCCCCCCCCC--CHHHHH-HHHH
Q ss_conf 97405646---379998--------331697699995388-8256640----665445556767431--118999-9889
Q 005511 500 QILEDGRL---TDSKGR--------TVDFKNTLLIMTSNV-GSSVIEK----GGRRIGFDLDYDEKD--SSYNRI-KSLV 560 (693)
Q Consensus 500 ~~le~g~~---~~~~~~--------~~~~~~~i~I~tsn~-~~~~i~~----~~~~~~~~~~~~~~~--~~~~~l-~~~~ 560 (693)
++|+ |.. .+..++ .+...|.+||+++|. +...+.. ....+||........ .....+ ..+.
T Consensus 152 ~~le-g~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~ 230 (363)
T 3hws_A 152 KLIE-GTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVE 230 (363)
T ss_dssp HHHH-CC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCC
T ss_pred HHHC-CCEEECCCCCCCCCCCCCEEEEECCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCC
T ss_conf 9853-762522676665467776499987870078437707799999986312456786655454432010688988579
Q ss_pred HHHHHHC-CCHHHHHCCCCEEECCCCCHHHHHHHHHH----HHHHHHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCH
Q ss_conf 9998601-76368603594787478999999999999----999999998309985983988999999804498899603
Q 005511 561 TEELKQY-FRPEFLNRLDEMIVFRQLTKLEVKEIADI----MLKEVFDRLKTKDIELQVTERFRERVVEEGYNPSYGARP 635 (693)
Q Consensus 561 ~~~~~~~-~~~~l~~r~~~~i~f~~l~~~~~~~i~~~----~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~g~r~ 635 (693)
..++... |+|+|++||+.++.|.|++.+++.+|+.. .+..+...+...+..+.++++++++|++.+|+++.|+|+
T Consensus 231 ~~~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~ 310 (363)
T 3hws_A 231 PEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARG 310 (363)
T ss_dssp HHHHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTT
T ss_pred HHHHHHCCCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCCCCCHH
T ss_conf 99998719887886566715404899999999999989989999999999846964887899999999961687668247
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECC
Q ss_conf 7999999989999999870202799989999739
Q 005511 636 LRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDS 669 (693)
Q Consensus 636 l~~~i~~~i~~~l~~~~~~~~~~~~~~~~i~~~~ 669 (693)
|++.|++.+..++++..-. .+-..+.|+.+.
T Consensus 311 L~~~ie~~~~~~l~~~~~~---~~~~~~~I~~~~ 341 (363)
T 3hws_A 311 LRSIVEAALLDTMYDLPSM---EDVEKVVIDESV 341 (363)
T ss_dssp HHHHHHHHHHHHHHSTTTC---CCSEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHCCCC---CCCCEEEECHHH
T ss_conf 9999999989999745244---678515776999
No 9
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=215.01 Aligned_cols=200 Identities=25% Similarity=0.321 Sum_probs=162.8
Q ss_pred CCCCCCCCCHHHHHHHHHHH-------------HCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEE
Q ss_conf 99987668889999999997-------------03999980788899971999999999997559999988996699986
Q 005511 39 GKLDPVVGRQPQIERVVQIL-------------GRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLD 105 (693)
Q Consensus 39 ~~~~~ivG~~~~~~~l~~~l-------------~~~~~~~ilL~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 105 (693)
-+++++.|.+++++.+.+.+ +..+++++|||||||||||++|+++|+++ +.+++.++
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~----------~~~f~~v~ 214 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT----------DCKFIRVS 214 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH----------TCEEEEEE
T ss_pred CCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHH----------CCCCEEEE
T ss_conf 98888288899999999999998749999986799988825885899998789999999851----------88852888
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHCCCCCC---HHH---HHHHHHHHHC----CCCCEEEE
Q ss_conf 5210139744661899999999999708984999916003310899988---476---9998833110----79817999
Q 005511 106 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEG---AID---AANILKPSLA----RGELQCIG 175 (693)
Q Consensus 106 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~iL~iDEid~l~~~~~~~~---~~~---~~~~L~~~l~----~~~i~iI~ 175 (693)
++.+. .+|.|+.+..++.+|..++...|+||||||+|.+++.+.... ... ..+.|+..++ ...+++|+
T Consensus 215 ~s~l~--sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIa 292 (405)
T 4b4t_J 215 GAELV--QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIM 292 (405)
T ss_dssp GGGGS--CSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEE
T ss_pred HHHHH--CCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 68951--1335468999999999998709946765334111157788899976899999999999604338888757881
Q ss_pred EECHHHHHHHHHCCHHHHC--CCC-CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 7435889854203988854--678-3115899999999999999996722037666858999999864441004677034
Q 005511 176 ATTLDEYRKHIEKDPALER--RFQ-PVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDK 252 (693)
Q Consensus 176 ~t~~~~~~~~~~l~~~l~~--Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 252 (693)
+||.++ .+||++++ ||+ .|.|+.|+.++|.+||+.++++.... .+..+..++..+.||.+ ++
T Consensus 293 ATNrpd-----~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~-----~dvdl~~lA~~t~G~SG-----AD 357 (405)
T 4b4t_J 293 ATNRLD-----ILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT-----RGINLRKVAEKMNGCSG-----AD 357 (405)
T ss_dssp EESCSS-----SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC-----SSCCHHHHHHHCCSCCH-----HH
T ss_pred CCCCHH-----HCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCC-----CCCCHHHHHHHCCCCCH-----HH
T ss_conf 269814-----4899672877676699769969999999999985599999-----65799999987799999-----99
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 6669998756888
Q 005511 253 AIDLIDEAGSRVR 265 (693)
Q Consensus 253 a~~~l~~a~~~~~ 265 (693)
...++.+|+..+.
T Consensus 358 i~~l~~eA~~~Ai 370 (405)
T 4b4t_J 358 VKGVCTEAGMYAL 370 (405)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999999
No 10
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=1.00 E-value=1 Score=212.35 Aligned_cols=365 Identities=18% Similarity=0.259 Sum_probs=234.2
Q ss_pred CCCCCHHHHHHHHHHHHC--------------CCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCC
Q ss_conf 766888999999999703--------------999980788899971999999999997559999988996699986521
Q 005511 43 PVVGRQPQIERVVQILGR--------------RTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPDTIEGKKVITLDMGL 108 (693)
Q Consensus 43 ~ivG~~~~~~~l~~~l~~--------------~~~~~ilL~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 108 (693)
.++|++.+++.+..++.. .++.++||+||||||||++|+++|+.+ +.+++.++++.
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l----------~~~~~~v~~~~ 85 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA----------NAPFIKVEATK 85 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT----------TCCEEEEEGGG
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHC----------CCCCEEECCHH
T ss_conf 82798999999999999898510111000113577618997589987899999999981----------98714521144
Q ss_pred CCCCCCCCC-HHHHHHHHHHHHHHHCCCEEEEEECCCHHHHCCCCCCHHHHHHHHHHHHCC--CCCEEEEE-ECHHHHHH
Q ss_conf 013974466-189999999999970898499991600331089998847699988331107--98179997-43588985
Q 005511 109 LVAGTKYRG-EFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPSLAR--GELQCIGA-TTLDEYRK 184 (693)
Q Consensus 109 ~~~~~~~~g-~~~~~~~~~~~~~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~i~iI~~-t~~~~~~~ 184 (693)
+.. ..|.| ..+..++.++..+.. ++++||++.+...........+.+.|+..++. +.-.++++ ||.++
T Consensus 86 ~~~-~g~vG~d~e~~lr~lf~~a~~----~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~--- 157 (444)
T 1g41_A 86 FTE-VGYVGKEVDSIIRDLTDSAMK----LVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQ--- 157 (444)
T ss_dssp GC-----CCCCTHHHHHHHHHHHHH----HHHHHHHHSCC----------------------------------------
T ss_pred HCC-CCEEECCHHHHHHHHHHHHHH----CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH---
T ss_conf 203-661423477789999888875----422666544202420269999999998874245564440112324889---
Q ss_pred HHHCCHHHHC--CCC-CCCCCCCCHH-HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 4203988854--678-3115899999-99999999999672203766685899999986444100467703466699987
Q 005511 185 HIEKDPALER--RFQ-PVKVPEPSVD-ETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEA 260 (693)
Q Consensus 185 ~~~l~~~l~~--Rf~-~i~~~~p~~~-e~~~il~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~a~~~l~~a 260 (693)
.+++++++ ||+ .|+++.|+.. .+.+|+.. . ++. ++. ..
T Consensus 158 --~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~~--~------g~~----------~~~-~~----------------- 199 (444)
T 1g41_A 158 --AFRKKLREGQLDDKEIEIDVSAGVSMGVEIMAP--P------GME----------EMT-NQ----------------- 199 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --HHHHHHHCCCCCCEEEEECCCCCCCCHHHHHCC--C------CHH----------HHH-HH-----------------
T ss_conf --999999729876459997179875422355427--8------757----------788-88-----------------
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 56888841179378999999999999988797307436887666889999999999988654662376431299999659
Q 005511 261 GSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVT 340 (693)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 340 (693)
T Consensus 200 -------------------------------------------------------------------------------- 199 (444)
T 1g41_A 200 -------------------------------------------------------------------------------- 199 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHH
Q ss_conf 76799999987389966778203578999999985252693899999999999975027899998438999515889279
Q 005511 341 EVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKS 420 (693)
Q Consensus 341 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~Gq~~~i~~l~~~i~~~~~~~~~~~~~~~~ill~Gp~GtGKt 420 (693)
+...+ ..+.++. +-.-|-
T Consensus 200 ---~~~~~---------------------------~~~~~~~--------------------------------~~~~~~ 217 (444)
T 1g41_A 200 ---LQSLF---------------------------QNLGSDK--------------------------------TKKRKM 217 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---HHHHH---------------------------HHHCCCC--------------------------------CCCEEE
T ss_conf ---99999---------------------------8645787--------------------------------751142
Q ss_pred HHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC-CCEEEEECCCCCCCH-------
Q ss_conf 999999999639975405533543221000110028999876767512266999809-998999846742298-------
Q 005511 421 ELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRR-PYTVVLFDEIEKAHP------- 492 (693)
Q Consensus 421 ~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~-~~~vl~iDEid~l~~------- 492 (693)
++..+..- +.......+.+ . .....++++.+ +++|+++||+||+..
T Consensus 218 ~v~~a~~~--------l~~~e~~~l~~----------------~--~~~~~~ai~~ae~~~il~~DEidki~~~~~~~~~ 271 (444)
T 1g41_A 218 KIKDALKA--------LIDDEAAKLIN----------------P--EELKQKAIDAVEQNGIVFIDEIDKICKKGEYSGA 271 (444)
T ss_dssp ----------------CCGGGSCSSCC----------------H--HHHHHHHHHHHHHHCEEEEETGGGGSCCSSCSSS
T ss_pred EHHHHHHH--------HHHHHHHHCCC----------------H--HHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCCC
T ss_conf 39999999--------99999987348----------------8--9999999997325785358899998503477788
Q ss_pred -----HHHHHHHHHHHCCEEECCCCCEEECCCEEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf -----899999997405646379998331697699995388825664066544555676743111899998899998601
Q 005511 493 -----DVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQY 567 (693)
Q Consensus 493 -----~~~~~Ll~~le~g~~~~~~~~~~~~~~~i~I~tsn~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 567 (693)
.+|++||+++|........ ..+++++++||+++.+... ++. +
T Consensus 272 D~s~egvq~aLL~~le~~~~~~~~-~~~d~~~ilfI~~gaf~~~-------------------~~~------------d- 318 (444)
T 1g41_A 272 DVSREGVQRDLLPLVEGSTVSTKH-GMVKTDHILFIASGAFQVA-------------------RPS------------D- 318 (444)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEETT-EEEECTTCEEEEEECCSSC-------------------CGG------------G-
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCC-CEECCCCEEEEECCCCCCC-------------------CHH------------H-
T ss_conf 841789999999874155211352-0014774799922632448-------------------934------------4-
Q ss_pred CCHHHHHCCCCEEECCCCCHHHHHHHHH----HHHHHHHHHHHCCCCEEEECHHHHHHHHHHC-----CCCCCCCCHHHH
Q ss_conf 7636860359478747899999999999----9999999998309985983988999999804-----498899603799
Q 005511 568 FRPEFLNRLDEMIVFRQLTKLEVKEIAD----IMLKEVFDRLKTKDIELQVTERFRERVVEEG-----YNPSYGARPLRR 638 (693)
Q Consensus 568 ~~~~l~~r~~~~i~f~~l~~~~~~~i~~----~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~-----~~~~~g~r~l~~ 638 (693)
+.|+|++||+.++.|++|+.+++..|+. ..+.++...+...++.+.|+++++.++++.+ |..+.|+|.|++
T Consensus 319 lipel~~R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~ 398 (444)
T 1g41_A 319 LIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHT 398 (444)
T ss_dssp SCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHH
T ss_pred CCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCHHHHH
T ss_conf 06577544632541799999999999997887699999998514594589899999999999887414786478258999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEEEC
Q ss_conf 999998999999987020279998999973
Q 005511 639 AIMRLLEDSMAEKMLAREIKEGDSVIVDVD 668 (693)
Q Consensus 639 ~i~~~i~~~l~~~~~~~~~~~~~~~~i~~~ 668 (693)
.+.+.+...+++..- ..+.+++|+.+
T Consensus 399 ~ie~~~~~~~~~~~~----~~~~~~~i~~~ 424 (444)
T 1g41_A 399 VMERLMDKISFSASD----MNGQTVNIDAA 424 (444)
T ss_dssp HHHHHHHHHHHHGGG----CTTCEEEECHH
T ss_pred HHHHHHHHHHHHCCC----CCCCEEEEEHH
T ss_conf 999999999853422----58985997099
Done!